Query 017844
Match_columns 365
No_of_seqs 391 out of 3382
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2035 Replication factor C, 100.0 1.9E-57 4.1E-62 383.7 32.7 323 1-326 1-324 (351)
2 PRK14958 DNA polymerase III su 100.0 8.6E-48 1.9E-52 368.7 25.2 334 2-358 5-355 (509)
3 PRK07003 DNA polymerase III su 100.0 3.4E-47 7.3E-52 366.5 26.5 336 2-360 5-359 (830)
4 COG2812 DnaX DNA polymerase II 100.0 2.4E-47 5.1E-52 358.4 20.9 336 3-359 6-360 (515)
5 PRK14964 DNA polymerase III su 100.0 1.3E-46 2.9E-51 355.0 26.1 335 1-360 1-355 (491)
6 PRK12323 DNA polymerase III su 100.0 7.2E-47 1.6E-51 360.2 24.1 340 2-359 5-363 (700)
7 KOG0989 Replication factor C, 100.0 3.1E-46 6.7E-51 320.9 25.4 291 1-323 24-323 (346)
8 PRK14951 DNA polymerase III su 100.0 3.4E-46 7.4E-51 361.1 27.5 342 2-359 5-364 (618)
9 PRK14956 DNA polymerase III su 100.0 6.9E-46 1.5E-50 346.0 27.1 340 2-360 7-370 (484)
10 PRK14960 DNA polymerase III su 100.0 4.2E-46 9.1E-51 355.8 26.0 335 2-359 4-358 (702)
11 PRK06645 DNA polymerase III su 100.0 9.6E-45 2.1E-49 345.2 27.5 339 1-358 9-370 (507)
12 PRK08691 DNA polymerase III su 100.0 4.1E-45 8.8E-50 352.2 24.3 335 2-359 5-358 (709)
13 PRK14952 DNA polymerase III su 100.0 2.4E-44 5.3E-49 347.3 28.5 337 1-360 1-364 (584)
14 PLN03025 replication factor C 100.0 1.4E-43 2.9E-48 325.0 30.9 292 1-327 1-295 (319)
15 PRK07994 DNA polymerase III su 100.0 1.7E-44 3.6E-49 349.9 26.0 332 2-357 5-357 (647)
16 PRK14961 DNA polymerase III su 100.0 1.3E-43 2.8E-48 329.8 26.8 336 2-358 5-359 (363)
17 PRK14969 DNA polymerase III su 100.0 5.8E-44 1.3E-48 344.5 25.0 336 2-358 5-357 (527)
18 PRK14949 DNA polymerase III su 100.0 1.3E-43 2.7E-48 348.0 25.8 335 2-359 5-357 (944)
19 PRK14957 DNA polymerase III su 100.0 1.6E-43 3.6E-48 338.5 25.7 335 2-359 5-358 (546)
20 PRK14965 DNA polymerase III su 100.0 4E-43 8.7E-48 342.5 26.0 334 3-359 6-361 (576)
21 KOG0991 Replication factor C, 100.0 2.9E-42 6.3E-47 284.9 24.6 288 2-324 16-306 (333)
22 PRK09111 DNA polymerase III su 100.0 2.6E-42 5.7E-47 335.0 27.1 339 2-358 13-373 (598)
23 PRK07764 DNA polymerase III su 100.0 4.9E-42 1.1E-46 342.9 26.5 336 1-359 3-365 (824)
24 PRK05563 DNA polymerase III su 100.0 1.3E-41 2.7E-46 330.5 27.5 333 3-358 6-359 (559)
25 PRK14959 DNA polymerase III su 100.0 2.8E-41 6E-46 324.6 25.1 337 2-361 5-364 (624)
26 PRK08451 DNA polymerase III su 100.0 5.6E-41 1.2E-45 319.4 25.8 278 2-303 3-287 (535)
27 PRK14971 DNA polymerase III su 100.0 7.9E-41 1.7E-45 327.0 27.0 336 2-359 6-362 (614)
28 PRK14963 DNA polymerase III su 100.0 3.8E-40 8.1E-45 315.3 29.5 279 4-303 5-287 (504)
29 PRK06647 DNA polymerase III su 100.0 9.2E-41 2E-45 323.0 25.2 338 2-360 5-359 (563)
30 PRK14953 DNA polymerase III su 100.0 1E-40 2.2E-45 318.3 25.0 334 2-360 5-355 (486)
31 PRK07133 DNA polymerase III su 100.0 6.6E-41 1.4E-45 326.3 24.0 333 2-359 7-355 (725)
32 PRK05896 DNA polymerase III su 100.0 8.4E-41 1.8E-45 319.7 24.0 282 2-303 5-291 (605)
33 PRK14954 DNA polymerase III su 100.0 2.1E-40 4.6E-45 322.0 27.0 344 3-360 6-374 (620)
34 PRK14948 DNA polymerase III su 100.0 1.3E-39 2.8E-44 318.4 27.8 339 2-361 5-364 (620)
35 PRK14955 DNA polymerase III su 100.0 9.7E-40 2.1E-44 307.2 25.3 343 2-359 5-373 (397)
36 PRK06305 DNA polymerase III su 100.0 1.4E-39 3E-44 308.8 24.1 334 2-358 6-348 (451)
37 PRK14962 DNA polymerase III su 100.0 9E-39 1.9E-43 303.5 27.5 283 2-306 3-292 (472)
38 PRK14950 DNA polymerase III su 100.0 6.3E-39 1.4E-43 314.6 27.2 336 3-361 6-363 (585)
39 TIGR02397 dnaX_nterm DNA polym 100.0 3E-38 6.5E-43 295.3 27.2 333 2-357 3-355 (355)
40 PRK14970 DNA polymerase III su 100.0 3.9E-37 8.5E-42 288.3 28.6 328 1-361 5-351 (367)
41 PRK12402 replication factor C 100.0 1.4E-36 3E-41 282.2 31.4 311 1-326 3-321 (337)
42 PRK00440 rfc replication facto 100.0 7.4E-36 1.6E-40 275.3 32.2 305 2-358 6-315 (319)
43 COG2256 MGS1 ATPase related to 100.0 4.1E-34 8.9E-39 255.1 23.4 321 1-364 12-365 (436)
44 PRK04195 replication factor C 100.0 8.5E-34 1.8E-38 273.6 25.5 278 1-323 2-294 (482)
45 PHA02544 44 clamp loader, smal 100.0 1.1E-31 2.5E-36 246.8 30.1 276 1-325 9-293 (316)
46 PRK13342 recombination factor 100.0 4E-32 8.6E-37 257.3 26.2 321 2-364 1-346 (413)
47 PRK13341 recombination factor 100.0 1.7E-31 3.7E-36 264.5 25.3 322 1-364 16-373 (725)
48 PRK04132 replication factor C 100.0 1.8E-30 3.8E-35 258.2 27.2 254 37-326 567-826 (846)
49 PRK05564 DNA polymerase III su 100.0 8.4E-30 1.8E-34 233.3 25.9 295 11-356 2-310 (313)
50 KOG0990 Replication factor C, 100.0 4.2E-30 9.1E-35 222.6 20.5 213 1-241 29-242 (360)
51 PRK07940 DNA polymerase III su 100.0 1.7E-29 3.6E-34 235.0 23.8 200 11-233 3-215 (394)
52 KOG2028 ATPase related to the 100.0 6.8E-31 1.5E-35 230.7 12.4 285 2-364 127-430 (554)
53 PRK09112 DNA polymerase III su 100.0 3E-29 6.4E-34 230.3 21.0 217 6-234 16-243 (351)
54 PRK08058 DNA polymerase III su 100.0 1.5E-28 3.3E-33 225.5 21.9 200 11-233 3-206 (329)
55 PRK07471 DNA polymerase III su 100.0 3.6E-28 7.9E-33 224.3 20.7 218 7-233 13-240 (365)
56 PF05496 RuvB_N: Holliday junc 100.0 1.6E-28 3.4E-33 206.1 16.4 193 2-239 13-229 (233)
57 PRK07399 DNA polymerase III su 100.0 9.2E-28 2E-32 217.7 20.7 202 11-235 2-225 (314)
58 PRK06871 DNA polymerase III su 100.0 2.3E-26 5.1E-31 207.8 28.3 195 18-233 7-205 (325)
59 PRK07993 DNA polymerase III su 100.0 1.5E-27 3.3E-32 217.8 19.7 195 18-233 7-206 (334)
60 PRK05707 DNA polymerase III su 99.9 1.1E-26 2.5E-31 211.6 18.7 189 25-233 12-205 (328)
61 KOG1969 DNA replication checkp 99.9 1.6E-25 3.4E-30 212.4 23.9 267 2-303 260-593 (877)
62 PRK06090 DNA polymerase III su 99.9 5.1E-26 1.1E-30 205.1 19.7 191 18-233 8-203 (319)
63 PRK08769 DNA polymerase III su 99.9 5.7E-26 1.2E-30 205.0 19.4 194 18-233 9-210 (319)
64 TIGR00678 holB DNA polymerase 99.9 2.6E-25 5.7E-30 188.9 17.9 183 23-228 2-188 (188)
65 PRK06964 DNA polymerase III su 99.9 6.3E-25 1.4E-29 199.9 18.9 191 18-233 6-227 (342)
66 PF13177 DNA_pol3_delta2: DNA 99.9 1.3E-25 2.9E-30 185.0 12.7 159 17-190 1-162 (162)
67 COG0470 HolB ATPase involved i 99.9 1.6E-24 3.5E-29 200.2 15.3 204 13-238 1-206 (325)
68 PRK00080 ruvB Holliday junctio 99.9 1E-23 2.2E-28 194.5 20.1 192 2-238 14-229 (328)
69 PRK07276 DNA polymerase III su 99.9 1.1E-23 2.3E-28 187.1 19.1 190 17-233 6-199 (290)
70 COG2255 RuvB Holliday junction 99.9 2E-23 4.3E-28 178.6 18.8 189 5-238 18-230 (332)
71 TIGR02902 spore_lonB ATP-depen 99.9 1.5E-23 3.3E-28 203.4 18.9 222 2-239 54-312 (531)
72 PRK05917 DNA polymerase III su 99.9 1.4E-22 3.1E-27 179.2 19.0 172 19-226 3-176 (290)
73 PRK08699 DNA polymerase III su 99.9 9.9E-22 2.2E-26 179.0 23.9 166 18-200 6-183 (325)
74 PRK05818 DNA polymerase III su 99.9 4.3E-22 9.3E-27 172.2 18.8 176 33-235 5-194 (261)
75 TIGR00602 rad24 checkpoint pro 99.9 3E-22 6.6E-27 195.1 19.5 222 2-239 73-331 (637)
76 TIGR00635 ruvB Holliday juncti 99.9 6.9E-22 1.5E-26 180.9 19.7 184 10-238 1-208 (305)
77 PRK12422 chromosomal replicati 99.9 3.6E-21 7.7E-26 182.5 23.2 277 11-325 109-414 (445)
78 PRK14087 dnaA chromosomal repl 99.9 5.8E-21 1.3E-25 181.7 22.8 284 9-325 111-419 (450)
79 COG0593 DnaA ATPase involved i 99.9 1.6E-20 3.5E-25 172.6 21.2 270 11-325 85-382 (408)
80 PRK07132 DNA polymerase III su 99.9 2.7E-20 5.9E-25 166.9 21.2 184 19-233 2-186 (299)
81 PRK08084 DNA replication initi 99.9 2.4E-20 5.1E-25 163.5 20.2 182 11-236 20-214 (235)
82 PRK00149 dnaA chromosomal repl 99.9 7.8E-21 1.7E-25 182.4 18.4 278 11-325 120-420 (450)
83 PRK14086 dnaA chromosomal repl 99.9 1.9E-20 4.1E-25 180.2 20.1 276 11-325 286-586 (617)
84 TIGR00362 DnaA chromosomal rep 99.9 9.5E-21 2.1E-25 179.7 17.7 275 11-322 108-405 (405)
85 TIGR02881 spore_V_K stage V sp 99.9 1.7E-20 3.6E-25 167.4 17.8 191 11-238 4-237 (261)
86 PRK14088 dnaA chromosomal repl 99.9 6.8E-20 1.5E-24 174.2 21.5 277 11-324 103-403 (440)
87 PF03215 Rad17: Rad17 cell cyc 99.8 6.8E-20 1.5E-24 175.7 20.2 222 2-237 8-269 (519)
88 PRK08727 hypothetical protein; 99.8 1.7E-19 3.6E-24 157.9 20.8 183 10-236 16-209 (233)
89 PRK06893 DNA replication initi 99.8 1.2E-19 2.6E-24 158.6 19.4 185 8-236 11-208 (229)
90 PRK08903 DnaA regulatory inact 99.8 3.1E-19 6.7E-24 156.3 19.2 183 8-238 13-206 (227)
91 KOG1970 Checkpoint RAD17-RFC c 99.8 3.5E-19 7.5E-24 165.0 19.1 219 2-238 71-322 (634)
92 COG1223 Predicted ATPase (AAA+ 99.8 7.7E-20 1.7E-24 154.5 13.0 183 8-228 116-323 (368)
93 TIGR02903 spore_lon_C ATP-depe 99.8 1.1E-18 2.3E-23 172.2 20.0 216 4-237 145-400 (615)
94 TIGR03420 DnaA_homol_Hda DnaA 99.8 1.5E-18 3.2E-23 152.0 18.5 185 9-237 11-207 (226)
95 CHL00181 cbbX CbbX; Provisiona 99.8 1.7E-18 3.7E-23 155.5 17.3 189 13-239 23-254 (287)
96 PRK06620 hypothetical protein; 99.8 3E-18 6.4E-23 147.6 17.8 168 11-237 14-195 (214)
97 PRK05642 DNA replication initi 99.8 6.3E-18 1.4E-22 148.0 20.1 184 10-237 16-214 (234)
98 PF00308 Bac_DnaA: Bacterial d 99.8 7.1E-18 1.5E-22 146.0 19.9 194 11-239 6-216 (219)
99 PTZ00112 origin recognition co 99.8 6.7E-18 1.4E-22 165.2 19.5 216 5-238 750-988 (1164)
100 PRK06581 DNA polymerase III su 99.8 3.2E-17 6.9E-22 138.8 19.8 182 22-234 2-190 (263)
101 TIGR02880 cbbX_cfxQ probable R 99.8 1.3E-17 2.9E-22 149.9 17.7 193 14-239 23-253 (284)
102 PRK09087 hypothetical protein; 99.8 1.1E-17 2.5E-22 145.2 16.0 172 11-237 19-201 (226)
103 TIGR02639 ClpA ATP-dependent C 99.8 2.1E-17 4.5E-22 167.2 20.3 204 2-238 171-404 (731)
104 COG1222 RPT1 ATP-dependent 26S 99.8 2.2E-17 4.8E-22 146.0 17.0 180 5-223 143-355 (406)
105 TIGR02928 orc1/cdc6 family rep 99.8 1.6E-16 3.4E-21 149.2 23.4 221 3-239 8-254 (365)
106 PRK00411 cdc6 cell division co 99.7 5.8E-16 1.3E-20 146.9 24.9 211 13-238 30-261 (394)
107 TIGR03345 VI_ClpV1 type VI sec 99.7 5.9E-17 1.3E-21 165.1 18.4 205 3-239 177-410 (852)
108 TIGR01241 FtsH_fam ATP-depende 99.7 5E-16 1.1E-20 150.9 18.0 193 5-235 47-271 (495)
109 PTZ00361 26 proteosome regulat 99.7 5.4E-16 1.2E-20 146.0 15.5 196 2-235 172-400 (438)
110 KOG0730 AAA+-type ATPase [Post 99.7 5.5E-16 1.2E-20 147.0 15.5 193 8-239 429-652 (693)
111 PF06068 TIP49: TIP49 C-termin 99.7 9.9E-16 2.2E-20 137.4 16.3 105 131-236 279-396 (398)
112 COG1224 TIP49 DNA helicase TIP 99.7 3.1E-15 6.8E-20 132.2 19.0 107 131-238 292-411 (450)
113 COG1474 CDC6 Cdc6-related prot 99.7 6.7E-15 1.5E-19 136.1 22.3 215 6-240 13-246 (366)
114 CHL00176 ftsH cell division pr 99.7 4.5E-15 9.7E-20 146.2 20.9 190 10-237 180-401 (638)
115 PTZ00454 26S protease regulato 99.7 5.5E-15 1.2E-19 138.3 19.2 193 8-238 140-365 (398)
116 TIGR00763 lon ATP-dependent pr 99.7 1.6E-15 3.5E-20 154.3 15.9 194 14-236 321-551 (775)
117 CHL00195 ycf46 Ycf46; Provisio 99.7 5E-15 1.1E-19 141.5 17.9 177 10-223 225-427 (489)
118 TIGR03345 VI_ClpV1 type VI sec 99.7 7.3E-15 1.6E-19 149.9 20.2 199 13-235 566-826 (852)
119 KOG0733 Nuclear AAA ATPase (VC 99.6 6.6E-15 1.4E-19 138.2 17.2 184 11-232 188-403 (802)
120 PRK03992 proteasome-activating 99.6 6.4E-15 1.4E-19 138.5 17.5 189 10-236 128-349 (389)
121 TIGR03689 pup_AAA proteasome A 99.6 9.3E-15 2E-19 139.5 18.4 185 4-212 173-387 (512)
122 TIGR03346 chaperone_ClpB ATP-d 99.6 4.1E-15 8.9E-20 152.7 16.8 205 3-239 163-396 (852)
123 KOG0734 AAA+-type ATPase conta 99.6 4.5E-15 9.7E-20 137.3 14.3 190 10-238 301-520 (752)
124 PRK11034 clpA ATP-dependent Cl 99.6 3E-14 6.5E-19 142.8 20.9 204 8-239 181-409 (758)
125 PRK08487 DNA polymerase III su 99.6 1.7E-13 3.7E-18 126.3 23.7 286 23-357 4-323 (328)
126 PRK10865 protein disaggregatio 99.6 7.9E-15 1.7E-19 150.0 16.2 205 3-239 168-401 (857)
127 TIGR01128 holA DNA polymerase 99.6 3.6E-14 7.8E-19 129.8 18.9 224 128-357 44-302 (302)
128 TIGR01242 26Sp45 26S proteasom 99.6 7.6E-15 1.7E-19 137.3 14.1 178 8-223 117-326 (364)
129 PRK07914 hypothetical protein; 99.6 1.1E-13 2.3E-18 127.3 21.4 226 127-358 61-315 (320)
130 TIGR01243 CDC48 AAA family ATP 99.6 2.1E-14 4.6E-19 145.8 18.4 177 10-224 450-656 (733)
131 PRK07452 DNA polymerase III su 99.6 1.4E-13 3.1E-18 127.1 21.5 280 35-357 2-322 (326)
132 PRK08485 DNA polymerase III su 99.6 5.6E-15 1.2E-19 121.9 10.4 119 109-236 41-172 (206)
133 KOG1942 DNA helicase, TBP-inte 99.6 8.3E-14 1.8E-18 120.2 17.9 106 131-237 297-416 (456)
134 CHL00095 clpC Clp protease ATP 99.6 4.9E-14 1.1E-18 144.4 19.6 184 13-220 509-759 (821)
135 PRK05907 hypothetical protein; 99.6 4.6E-13 1E-17 121.3 23.5 281 22-358 7-310 (311)
136 PRK05574 holA DNA polymerase I 99.6 3.3E-13 7.1E-18 125.5 23.3 225 128-359 74-339 (340)
137 PRK05629 hypothetical protein; 99.6 2.1E-13 4.6E-18 125.3 21.6 224 128-357 62-314 (318)
138 PRK10787 DNA-binding ATP-depen 99.6 4.1E-14 8.9E-19 142.9 18.2 204 1-235 301-551 (784)
139 CHL00095 clpC Clp protease ATP 99.6 2.9E-14 6.3E-19 146.1 16.7 202 5-239 171-401 (821)
140 TIGR03346 chaperone_ClpB ATP-d 99.6 1.1E-13 2.3E-18 142.3 20.6 200 13-236 565-822 (852)
141 KOG0738 AAA+-type ATPase [Post 99.6 1E-13 2.2E-18 123.9 17.7 172 10-223 209-415 (491)
142 KOG0733 Nuclear AAA ATPase (VC 99.6 8.3E-14 1.8E-18 130.9 17.3 174 10-220 508-711 (802)
143 TIGR03015 pepcterm_ATPase puta 99.6 1.5E-13 3.2E-18 123.6 18.5 205 17-238 27-245 (269)
144 PLN00020 ribulose bisphosphate 99.6 2.6E-14 5.6E-19 128.7 13.1 157 33-224 146-331 (413)
145 KOG2004 Mitochondrial ATP-depe 99.6 5.7E-14 1.2E-18 134.2 15.5 205 2-236 391-642 (906)
146 PRK06585 holA DNA polymerase I 99.6 8.5E-13 1.8E-17 122.8 23.2 282 33-358 19-336 (343)
147 PRK10865 protein disaggregatio 99.6 2.4E-13 5.2E-18 139.3 20.6 199 12-234 567-823 (857)
148 TIGR02030 BchI-ChlI magnesium 99.6 2.6E-13 5.5E-18 124.1 18.6 222 12-240 3-290 (337)
149 KOG0727 26S proteasome regulat 99.6 1.2E-13 2.7E-18 116.8 14.7 161 10-208 152-345 (408)
150 PRK13407 bchI magnesium chelat 99.6 2.4E-13 5.2E-18 124.0 17.8 228 8-239 3-286 (334)
151 COG0542 clpA ATP-binding subun 99.6 1.2E-13 2.5E-18 136.1 16.3 197 13-233 491-748 (786)
152 KOG0731 AAA+-type ATPase conta 99.5 2E-13 4.3E-18 133.5 17.6 217 9-263 307-556 (774)
153 TIGR02640 gas_vesic_GvpN gas v 99.5 1.2E-12 2.5E-17 116.8 21.1 104 132-240 107-241 (262)
154 COG0466 Lon ATP-dependent Lon 99.5 1.6E-13 3.5E-18 131.7 16.0 196 14-238 324-556 (782)
155 PRK11034 clpA ATP-dependent Cl 99.5 2.2E-13 4.7E-18 136.7 17.5 181 14-221 459-694 (758)
156 TIGR02639 ClpA ATP-dependent C 99.5 4E-13 8.8E-18 136.2 19.0 182 13-221 454-690 (731)
157 CHL00081 chlI Mg-protoporyphyr 99.5 1.2E-12 2.6E-17 119.6 18.0 229 6-239 9-302 (350)
158 KOG1968 Replication factor C, 99.5 1.6E-13 3.4E-18 137.9 12.9 202 1-238 308-538 (871)
159 TIGR01817 nifA Nif-specific re 99.5 1.3E-12 2.8E-17 128.4 19.2 209 6-239 189-428 (534)
160 PRK14700 recombination factor 99.5 7.7E-13 1.7E-17 116.3 14.2 205 160-364 8-242 (300)
161 PF05673 DUF815: Protein of un 99.5 5.5E-12 1.2E-16 108.1 19.0 189 6-236 20-246 (249)
162 KOG0652 26S proteasome regulat 99.5 1E-12 2.2E-17 111.8 14.3 175 10-222 168-374 (424)
163 KOG0739 AAA+-type ATPase [Post 99.5 2.1E-13 4.5E-18 118.0 10.3 176 11-223 131-333 (439)
164 PF00004 AAA: ATPase family as 99.5 7.3E-13 1.6E-17 105.5 11.7 115 37-187 1-131 (132)
165 TIGR01243 CDC48 AAA family ATP 99.5 2.2E-12 4.9E-17 131.2 17.9 180 9-227 174-383 (733)
166 KOG0728 26S proteasome regulat 99.5 2.4E-12 5.1E-17 108.9 14.7 183 3-223 137-351 (404)
167 KOG0737 AAA+-type ATPase [Post 99.5 1.8E-12 3.9E-17 115.8 14.4 186 10-233 89-305 (386)
168 COG0465 HflB ATP-dependent Zn 99.5 1.7E-12 3.6E-17 124.8 15.1 188 10-235 147-366 (596)
169 PRK10733 hflB ATP-dependent me 99.4 2.1E-12 4.6E-17 128.7 16.1 192 7-236 146-372 (644)
170 cd00009 AAA The AAA+ (ATPases 99.4 3.4E-12 7.3E-17 103.3 14.2 137 16-187 1-150 (151)
171 PRK05342 clpX ATP-dependent pr 99.4 4.2E-12 9.2E-17 119.3 16.7 176 15-221 73-357 (412)
172 COG0464 SpoVK ATPases of the A 99.4 3.9E-12 8.5E-17 124.1 16.6 177 10-223 239-445 (494)
173 KOG0742 AAA+-type ATPase [Post 99.4 1.2E-12 2.6E-17 117.9 11.8 157 12-205 354-531 (630)
174 TIGR02974 phageshock_pspF psp 99.4 1.1E-11 2.5E-16 113.8 18.4 200 15-239 1-233 (329)
175 PF01637 Arch_ATPase: Archaeal 99.4 2.8E-12 6.1E-17 112.4 13.6 199 15-229 1-232 (234)
176 KOG0743 AAA+-type ATPase [Post 99.4 9.5E-12 2.1E-16 114.2 16.6 151 8-203 196-384 (457)
177 KOG0740 AAA+-type ATPase [Post 99.4 3.3E-12 7.1E-17 118.0 13.3 178 5-223 145-354 (428)
178 KOG2680 DNA helicase TIP49, TB 99.4 1.9E-11 4E-16 106.1 16.9 108 130-238 288-408 (454)
179 TIGR02442 Cob-chelat-sub cobal 99.4 8.7E-12 1.9E-16 124.2 17.0 221 12-236 3-281 (633)
180 PRK11608 pspF phage shock prot 99.4 3.2E-11 7E-16 110.9 19.1 204 11-239 4-240 (326)
181 KOG0726 26S proteasome regulat 99.4 2.7E-12 5.8E-17 110.9 10.7 159 4-199 176-366 (440)
182 PRK13531 regulatory ATPase Rav 99.4 1.3E-10 2.8E-15 109.5 22.9 153 14-200 21-192 (498)
183 CHL00206 ycf2 Ycf2; Provisiona 99.4 8.2E-12 1.8E-16 131.3 16.0 108 130-237 1732-1855(2281)
184 KOG0729 26S proteasome regulat 99.4 4E-12 8.6E-17 108.5 10.8 184 1-223 165-381 (435)
185 PRK10820 DNA-binding transcrip 99.4 3E-11 6.5E-16 117.9 18.2 205 9-238 200-436 (520)
186 TIGR02329 propionate_PrpR prop 99.4 3.2E-11 7E-16 116.8 18.0 205 10-238 209-449 (526)
187 PRK05022 anaerobic nitric oxid 99.4 4.6E-11 1E-15 116.5 19.1 205 11-240 185-421 (509)
188 COG2204 AtoC Response regulato 99.4 4.2E-11 9E-16 112.4 17.3 206 10-240 138-375 (464)
189 KOG1514 Origin recognition com 99.3 6.3E-11 1.4E-15 113.7 18.2 187 36-240 424-629 (767)
190 KOG0744 AAA+-type ATPase [Post 99.3 2.6E-11 5.6E-16 106.3 14.1 141 37-204 180-342 (423)
191 PRK15424 propionate catabolism 99.3 6E-11 1.3E-15 114.9 18.2 204 11-238 217-464 (538)
192 TIGR00382 clpX endopeptidase C 99.3 4.1E-11 9E-16 112.0 16.5 190 15-235 79-380 (413)
193 KOG0736 Peroxisome assembly fa 99.3 2.1E-11 4.5E-16 117.8 14.3 180 6-224 665-878 (953)
194 COG1221 PspF Transcriptional r 99.3 3.5E-11 7.5E-16 111.0 15.1 206 10-240 75-310 (403)
195 PRK15429 formate hydrogenlyase 99.3 8.8E-11 1.9E-15 118.8 19.5 205 10-239 373-609 (686)
196 PRK11388 DNA-binding transcrip 99.3 5.9E-11 1.3E-15 119.3 17.8 199 10-239 322-554 (638)
197 PF01078 Mg_chelatase: Magnesi 99.3 9.7E-12 2.1E-16 104.4 9.5 132 11-156 1-132 (206)
198 COG0542 clpA ATP-binding subun 99.3 6.7E-11 1.4E-15 116.9 16.3 199 9-240 166-394 (786)
199 KOG2227 Pre-initiation complex 99.3 1.6E-11 3.4E-16 112.8 10.9 206 13-235 150-375 (529)
200 PRK11331 5-methylcytosine-spec 99.3 1.7E-10 3.7E-15 107.8 16.9 166 12-199 174-369 (459)
201 TIGR00390 hslU ATP-dependent p 99.3 9E-11 2E-15 108.4 14.5 109 130-238 247-403 (441)
202 KOG0735 AAA+-type ATPase [Post 99.3 2.2E-10 4.8E-15 109.9 17.3 188 11-236 665-885 (952)
203 TIGR01650 PD_CobS cobaltochela 99.3 6.4E-11 1.4E-15 106.7 13.0 187 7-221 39-252 (327)
204 COG4555 NatA ABC-type Na+ tran 99.3 1.5E-11 3.2E-16 101.1 7.9 151 21-185 17-207 (245)
205 COG3829 RocR Transcriptional r 99.3 1.6E-10 3.4E-15 108.6 15.7 205 9-237 241-477 (560)
206 COG1126 GlnQ ABC-type polar am 99.3 1E-11 2.3E-16 103.3 7.0 160 11-182 7-207 (240)
207 PRK05201 hslU ATP-dependent pr 99.2 2.6E-10 5.7E-15 105.4 16.1 109 130-238 249-405 (443)
208 COG1131 CcmA ABC-type multidru 99.2 7.4E-12 1.6E-16 113.2 5.1 158 11-182 9-208 (293)
209 COG1239 ChlI Mg-chelatase subu 99.2 4.1E-10 8.8E-15 103.0 15.3 208 12-226 16-253 (423)
210 KOG0651 26S proteasome regulat 99.2 8.8E-11 1.9E-15 102.5 10.3 176 11-223 130-339 (388)
211 PHA02244 ATPase-like protein 99.2 1.2E-09 2.5E-14 99.7 17.4 132 23-191 110-263 (383)
212 COG1466 HolA DNA polymerase II 99.2 7.8E-09 1.7E-13 95.6 23.2 171 128-302 72-253 (334)
213 TIGR02915 PEP_resp_reg putativ 99.2 1.2E-09 2.6E-14 105.5 18.5 205 11-240 137-373 (445)
214 COG2884 FtsE Predicted ATPase 99.2 6E-11 1.3E-15 96.6 7.4 160 19-188 15-214 (223)
215 COG3604 FhlA Transcriptional r 99.2 3E-10 6.5E-15 105.4 12.2 204 11-239 221-456 (550)
216 COG2607 Predicted ATPase (AAA+ 99.2 6.1E-09 1.3E-13 88.1 18.9 190 6-237 53-279 (287)
217 COG0714 MoxR-like ATPases [Gen 99.2 7.9E-10 1.7E-14 102.1 14.6 151 15-198 26-198 (329)
218 COG1121 ZnuC ABC-type Mn/Zn tr 99.1 7.4E-11 1.6E-15 102.2 6.3 157 20-181 18-209 (254)
219 PRK10923 glnG nitrogen regulat 99.1 2.6E-09 5.6E-14 103.8 17.8 204 11-239 136-371 (469)
220 PRK12377 putative replication 99.1 1.1E-09 2.4E-14 96.1 13.6 152 5-190 66-236 (248)
221 COG1124 DppF ABC-type dipeptid 99.1 8.6E-11 1.9E-15 99.8 6.3 151 21-184 22-215 (252)
222 TIGR00368 Mg chelatase-related 99.1 5.1E-10 1.1E-14 107.7 12.2 168 10-194 189-396 (499)
223 PRK13537 nodulation ABC transp 99.1 5.3E-11 1.1E-15 108.6 5.1 149 20-183 21-210 (306)
224 COG4152 ABC-type uncharacteriz 99.1 4.9E-11 1.1E-15 100.9 4.3 149 16-181 12-200 (300)
225 smart00763 AAA_PrkA PrkA AAA d 99.1 5.8E-09 1.2E-13 95.2 18.0 92 129-220 235-348 (361)
226 KOG0732 AAA+-type ATPase conta 99.1 2.3E-09 4.9E-14 108.4 16.3 191 10-232 262-481 (1080)
227 cd03213 ABCG_EPDR ABCG transpo 99.1 2E-10 4.3E-15 97.9 7.5 148 21-184 24-185 (194)
228 KOG0730 AAA+-type ATPase [Post 99.1 2.5E-09 5.4E-14 102.4 15.4 176 13-225 184-386 (693)
229 KOG0735 AAA+-type ATPase [Post 99.1 2.9E-09 6.3E-14 102.4 15.8 172 33-238 430-623 (952)
230 PF07724 AAA_2: AAA domain (Cd 99.1 2.5E-10 5.4E-15 94.7 7.7 104 36-171 5-131 (171)
231 smart00350 MCM minichromosome 99.1 3.9E-09 8.6E-14 102.9 16.8 158 14-203 204-401 (509)
232 PRK07952 DNA replication prote 99.1 6.4E-10 1.4E-14 97.3 10.1 153 5-190 64-235 (244)
233 PF00158 Sigma54_activat: Sigm 99.1 2.6E-09 5.6E-14 88.4 13.2 145 15-184 1-165 (168)
234 PF05621 TniB: Bacterial TniB 99.1 2.8E-09 6.2E-14 94.4 13.9 111 130-240 145-270 (302)
235 PRK08116 hypothetical protein; 99.1 8.8E-10 1.9E-14 98.3 10.7 154 6-191 78-251 (268)
236 cd03230 ABC_DR_subfamily_A Thi 99.1 5.8E-10 1.3E-14 93.3 9.0 138 28-184 22-168 (173)
237 TIGR00764 lon_rel lon-related 99.1 3.2E-09 6.9E-14 105.1 15.5 106 130-235 217-367 (608)
238 cd03269 ABC_putative_ATPase Th 99.1 6.4E-10 1.4E-14 96.1 9.0 54 129-183 145-200 (210)
239 TIGR01818 ntrC nitrogen regula 99.1 9.8E-09 2.1E-13 99.6 18.2 204 12-240 133-368 (463)
240 TIGR01188 drrA daunorubicin re 99.1 1.6E-10 3.5E-15 105.4 5.4 147 22-183 9-196 (302)
241 PRK13536 nodulation factor exp 99.1 1.1E-10 2.4E-15 107.8 4.3 149 21-184 56-245 (340)
242 PRK11361 acetoacetate metaboli 99.1 1.2E-08 2.7E-13 98.8 18.5 203 12-239 142-376 (457)
243 PF07728 AAA_5: AAA domain (dy 99.1 2.7E-10 5.8E-15 91.7 5.8 52 130-181 65-139 (139)
244 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.1 6.3E-10 1.4E-14 96.7 8.5 159 21-184 19-213 (218)
245 PRK15115 response regulator Gl 99.0 1.6E-08 3.4E-13 97.6 18.7 109 131-239 229-367 (444)
246 cd03215 ABC_Carb_Monos_II This 99.0 6.4E-10 1.4E-14 93.8 7.8 136 37-183 29-176 (182)
247 TIGR02031 BchD-ChlD magnesium 99.0 8E-09 1.7E-13 102.1 16.4 110 129-238 83-237 (589)
248 COG1125 OpuBA ABC-type proline 99.0 1.7E-10 3.7E-15 98.3 4.0 59 12-73 7-65 (309)
249 PRK08181 transposase; Validate 99.0 1.4E-09 3E-14 96.6 9.9 133 23-192 97-245 (269)
250 PRK13765 ATP-dependent proteas 99.0 4.8E-09 1E-13 103.5 14.4 53 7-61 25-77 (637)
251 cd03218 ABC_YhbG The ABC trans 99.0 4.8E-10 1.1E-14 98.4 6.7 159 21-183 15-205 (232)
252 COG3267 ExeA Type II secretory 99.0 6.7E-09 1.5E-13 88.9 13.0 199 18-233 36-247 (269)
253 COG3842 PotA ABC-type spermidi 99.0 2.3E-10 5E-15 104.1 4.5 169 13-185 12-211 (352)
254 PRK13543 cytochrome c biogenes 99.0 4.6E-10 1E-14 97.2 6.1 155 21-183 26-209 (214)
255 TIGR00960 3a0501s02 Type II (G 99.0 1.2E-09 2.6E-14 94.9 8.5 54 129-183 155-210 (216)
256 COG1117 PstB ABC-type phosphat 99.0 1.5E-09 3.3E-14 90.3 8.3 157 10-171 11-209 (253)
257 COG1120 FepC ABC-type cobalami 99.0 2.3E-10 4.9E-15 99.7 3.6 181 17-201 13-235 (258)
258 COG3839 MalK ABC-type sugar tr 99.0 2.9E-10 6.4E-15 102.9 4.2 159 21-184 18-207 (338)
259 cd03229 ABC_Class3 This class 99.0 5.8E-10 1.2E-14 93.7 5.7 139 28-182 22-172 (178)
260 PRK09862 putative ATP-dependen 99.0 2.8E-09 6.1E-14 102.2 10.9 168 10-194 188-393 (506)
261 cd03263 ABC_subfamily_A The AB 99.0 6.6E-10 1.4E-14 96.7 6.0 148 21-183 17-204 (220)
262 cd03259 ABC_Carb_Solutes_like 99.0 5.9E-10 1.3E-14 96.5 5.6 160 21-184 15-204 (213)
263 cd03258 ABC_MetN_methionine_tr 99.0 1.8E-09 3.9E-14 94.9 8.7 152 21-183 20-213 (233)
264 TIGR02673 FtsE cell division A 99.0 1.8E-09 3.8E-14 93.6 8.5 152 21-183 17-209 (214)
265 TIGR01288 nodI ATP-binding ABC 99.0 4.7E-10 1E-14 102.4 5.0 148 21-183 19-207 (303)
266 cd03233 ABC_PDR_domain1 The pl 99.0 2.6E-09 5.6E-14 91.7 9.2 148 22-183 23-192 (202)
267 cd03266 ABC_NatA_sodium_export 99.0 1.9E-09 4.2E-14 93.7 8.6 148 21-183 20-208 (218)
268 cd03268 ABC_BcrA_bacitracin_re 99.0 2.6E-09 5.5E-14 92.2 9.2 141 28-184 22-199 (208)
269 PF07726 AAA_3: ATPase family 99.0 1.6E-09 3.5E-14 83.6 6.8 51 132-182 64-130 (131)
270 cd03232 ABC_PDR_domain2 The pl 99.0 2.2E-09 4.7E-14 91.4 8.4 139 28-182 29-180 (192)
271 PF14532 Sigma54_activ_2: Sigm 99.0 4.8E-09 1E-13 84.2 9.9 125 16-188 1-137 (138)
272 cd03228 ABCC_MRP_Like The MRP 99.0 1.5E-09 3.3E-14 90.5 7.1 134 22-173 18-158 (171)
273 TIGR03522 GldA_ABC_ATP gliding 99.0 2.2E-09 4.8E-14 97.9 8.8 142 28-184 24-205 (301)
274 cd03246 ABCC_Protease_Secretio 99.0 3.7E-09 8E-14 88.4 9.2 136 28-183 24-167 (173)
275 cd03294 ABC_Pro_Gly_Bertaine T 99.0 7.8E-10 1.7E-14 99.2 5.5 54 129-183 177-233 (269)
276 cd03226 ABC_cobalt_CbiO_domain 99.0 6.3E-10 1.4E-14 95.8 4.5 158 21-183 15-198 (205)
277 cd03265 ABC_DrrA DrrA is the A 99.0 6.9E-10 1.5E-14 96.6 4.8 147 21-182 15-203 (220)
278 cd03293 ABC_NrtD_SsuB_transpor 98.9 2.5E-09 5.4E-14 93.1 8.3 157 22-184 20-205 (220)
279 PRK06526 transposase; Provisio 98.9 5E-09 1.1E-13 92.6 10.2 63 130-192 159-237 (254)
280 cd03216 ABC_Carb_Monos_I This 98.9 6.4E-09 1.4E-13 86.0 10.2 131 28-183 22-154 (163)
281 cd03261 ABC_Org_Solvent_Resist 98.9 3.1E-09 6.8E-14 93.5 8.8 55 129-184 153-210 (235)
282 cd03247 ABCC_cytochrome_bd The 98.9 2.9E-09 6.2E-14 89.5 8.2 135 28-183 24-168 (178)
283 KOG1051 Chaperone HSP104 and r 98.9 8.2E-09 1.8E-13 103.7 12.6 131 14-171 563-712 (898)
284 cd03292 ABC_FtsE_transporter F 98.9 2.8E-09 6E-14 92.4 8.3 54 129-183 153-208 (214)
285 PRK13539 cytochrome c biogenes 98.9 3.7E-09 8E-14 91.1 9.0 160 22-191 18-203 (207)
286 COG1219 ClpX ATP-dependent pro 98.9 3.2E-08 6.9E-13 87.1 14.7 192 15-237 63-365 (408)
287 TIGR03410 urea_trans_UrtE urea 98.9 1.3E-09 2.7E-14 95.7 6.1 157 21-183 15-204 (230)
288 cd03222 ABC_RNaseL_inhibitor T 98.9 7.8E-09 1.7E-13 86.3 10.2 119 30-183 23-144 (177)
289 PRK10908 cell division protein 98.9 3.6E-09 7.8E-14 92.2 8.5 55 129-184 154-210 (222)
290 cd03217 ABC_FeS_Assembly ABC-t 98.9 2.1E-09 4.6E-14 92.0 6.9 150 21-182 15-176 (200)
291 cd03224 ABC_TM1139_LivF_branch 98.9 3.9E-09 8.4E-14 92.0 8.7 158 22-183 16-204 (222)
292 TIGR03864 PQQ_ABC_ATP ABC tran 98.9 5.5E-09 1.2E-13 92.0 9.6 155 23-184 18-205 (236)
293 cd03264 ABC_drug_resistance_li 98.9 5.8E-09 1.3E-13 90.2 9.6 55 129-184 147-202 (211)
294 cd03301 ABC_MalK_N The N-termi 98.9 1.1E-09 2.3E-14 94.9 4.9 53 129-182 147-202 (213)
295 TIGR03740 galliderm_ABC gallid 98.9 6.8E-09 1.5E-13 90.6 9.6 52 129-181 141-194 (223)
296 TIGR02211 LolD_lipo_ex lipopro 98.9 5E-09 1.1E-13 91.3 8.7 44 129-172 158-204 (221)
297 COG1118 CysA ABC-type sulfate/ 98.9 2E-09 4.3E-14 94.4 6.0 158 21-183 17-210 (345)
298 PRK10584 putative ABC transpor 98.9 5.2E-09 1.1E-13 91.6 8.8 44 129-172 163-209 (228)
299 PRK11629 lolD lipoprotein tran 98.9 4.5E-09 9.8E-14 92.3 8.4 45 129-173 162-209 (233)
300 COG3283 TyrR Transcriptional r 98.9 5.4E-08 1.2E-12 86.9 14.9 199 10-238 201-431 (511)
301 COG1116 TauB ABC-type nitrate/ 98.9 1.3E-09 2.8E-14 93.4 4.6 150 17-172 14-193 (248)
302 smart00382 AAA ATPases associa 98.9 4.3E-08 9.3E-13 78.3 13.3 28 35-62 3-30 (148)
303 cd03262 ABC_HisP_GlnQ_permease 98.9 4.9E-09 1.1E-13 90.8 8.2 55 129-184 152-208 (213)
304 COG0410 LivF ABC-type branched 98.9 1.2E-09 2.5E-14 92.3 4.0 158 13-182 10-208 (237)
305 TIGR02314 ABC_MetN D-methionin 98.9 5.8E-09 1.3E-13 96.3 8.9 151 21-182 20-212 (343)
306 cd03223 ABCD_peroxisomal_ALDP 98.9 1.3E-08 2.8E-13 84.5 10.1 126 23-181 18-157 (166)
307 PF13173 AAA_14: AAA domain 98.9 1.4E-08 3E-13 80.5 9.8 119 37-194 5-127 (128)
308 PRK11153 metN DL-methionine tr 98.9 5.6E-09 1.2E-13 96.8 8.7 151 22-183 21-213 (343)
309 cd03225 ABC_cobalt_CbiO_domain 98.9 4.3E-09 9.3E-14 91.0 7.4 54 129-183 151-206 (211)
310 PRK11248 tauB taurine transpor 98.9 8.2E-09 1.8E-13 91.9 9.3 158 21-184 16-202 (255)
311 PF01695 IstB_IS21: IstB-like 98.9 2.7E-09 5.9E-14 89.2 5.9 102 35-171 48-151 (178)
312 TIGR01186 proV glycine betaine 98.9 1.6E-09 3.6E-14 100.5 5.0 149 24-182 11-201 (363)
313 TIGR02315 ABC_phnC phosphonate 98.9 2.9E-09 6.4E-14 94.1 6.3 50 20-72 16-65 (243)
314 TIGR03608 L_ocin_972_ABC putat 98.9 1.6E-09 3.4E-14 93.4 4.2 43 129-171 151-195 (206)
315 PRK13541 cytochrome c biogenes 98.9 1.5E-08 3.2E-13 86.5 10.1 129 37-173 29-186 (195)
316 cd03267 ABC_NatA_like Similar 98.9 3.5E-09 7.6E-14 93.2 6.3 54 129-183 170-226 (236)
317 cd03219 ABC_Mj1267_LivG_branch 98.9 6.8E-09 1.5E-13 91.4 8.2 54 129-183 160-215 (236)
318 PRK10365 transcriptional regul 98.9 1.7E-07 3.7E-12 90.4 18.5 109 130-238 233-371 (441)
319 COG1136 SalX ABC-type antimicr 98.9 1.1E-08 2.4E-13 87.5 8.9 142 21-171 20-204 (226)
320 cd03231 ABC_CcmA_heme_exporter 98.9 2.1E-09 4.6E-14 92.2 4.6 154 21-183 15-197 (201)
321 PF00931 NB-ARC: NB-ARC domain 98.9 5.4E-08 1.2E-12 88.2 14.1 195 19-234 2-205 (287)
322 cd03298 ABC_ThiQ_thiamine_tran 98.9 7.1E-09 1.5E-13 89.7 7.9 153 28-184 20-202 (211)
323 cd03234 ABCG_White The White s 98.9 6.1E-09 1.3E-13 91.1 7.3 56 129-184 160-217 (226)
324 COG1134 TagH ABC-type polysacc 98.9 6.2E-09 1.3E-13 88.7 7.0 137 37-182 56-218 (249)
325 PRK11124 artP arginine transpo 98.9 2.9E-09 6.2E-14 94.2 5.2 53 129-182 158-212 (242)
326 COG4133 CcmA ABC-type transpor 98.9 5.9E-09 1.3E-13 85.1 6.5 132 28-173 24-193 (209)
327 cd03237 ABC_RNaseL_inhibitor_d 98.8 1.8E-08 4E-13 89.0 10.1 142 37-184 28-189 (246)
328 PRK06921 hypothetical protein; 98.8 1.3E-08 2.8E-13 90.7 9.1 120 34-190 117-255 (266)
329 PRK11650 ugpC glycerol-3-phosp 98.8 9.8E-09 2.1E-13 95.5 8.6 158 22-183 20-207 (356)
330 PRK10895 lipopolysaccharide AB 98.8 1.2E-08 2.7E-13 90.0 8.8 156 21-182 18-208 (241)
331 KOG0741 AAA+-type ATPase [Post 98.8 1.2E-08 2.6E-13 95.2 8.9 156 37-221 259-436 (744)
332 TIGR00968 3a0106s01 sulfate AB 98.8 1.2E-08 2.5E-13 89.9 8.5 54 129-183 147-203 (237)
333 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 3E-08 6.5E-13 80.2 10.2 111 37-184 29-140 (144)
334 PRK09493 glnQ glutamine ABC tr 98.8 1.2E-08 2.6E-13 90.1 8.6 157 21-183 16-208 (240)
335 PRK11000 maltose/maltodextrin 98.8 9.7E-09 2.1E-13 96.1 8.4 158 22-183 19-206 (369)
336 TIGR01166 cbiO cobalt transpor 98.8 4.7E-09 1E-13 89.2 5.6 43 129-171 144-188 (190)
337 cd03296 ABC_CysA_sulfate_impor 98.8 1.3E-08 2.8E-13 89.8 8.6 159 21-183 17-209 (239)
338 KOG0745 Putative ATP-dependent 98.8 1.1E-07 2.3E-12 87.1 14.5 68 173-240 425-509 (564)
339 PRK11614 livF leucine/isoleuci 98.8 1.2E-08 2.5E-13 89.9 8.3 157 21-183 20-209 (237)
340 PRK11264 putative amino-acid A 98.8 3.6E-09 7.8E-14 94.0 5.1 55 129-184 161-217 (250)
341 PRK13538 cytochrome c biogenes 98.8 1.5E-08 3.2E-13 87.2 8.7 146 22-172 17-191 (204)
342 PRK13548 hmuV hemin importer A 98.8 4.3E-09 9.4E-14 93.9 5.5 55 129-184 157-214 (258)
343 PRK11432 fbpC ferric transport 98.8 1.2E-08 2.6E-13 94.6 8.4 145 22-182 22-208 (351)
344 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.8 3.9E-09 8.5E-14 92.1 4.9 143 37-184 51-215 (224)
345 COG0606 Predicted ATPase with 98.8 2.6E-08 5.7E-13 92.6 10.4 49 10-61 176-224 (490)
346 cd03235 ABC_Metallic_Cations A 98.8 5.4E-09 1.2E-13 90.5 5.7 159 21-184 14-205 (213)
347 cd03300 ABC_PotA_N PotA is an 98.8 6.1E-09 1.3E-13 91.4 6.0 54 129-183 147-203 (232)
348 TIGR01184 ntrCD nitrate transp 98.8 1.6E-08 3.4E-13 88.6 8.5 145 37-184 14-188 (230)
349 PRK10070 glycine betaine trans 98.8 1.4E-08 3.1E-13 95.4 8.6 53 129-182 181-236 (400)
350 PRK13540 cytochrome c biogenes 98.8 1.9E-08 4E-13 86.2 8.7 143 21-171 16-188 (200)
351 PRK06835 DNA replication prote 98.8 7.5E-08 1.6E-12 88.1 13.1 137 21-190 168-318 (329)
352 TIGR01277 thiQ thiamine ABC tr 98.8 1.9E-08 4E-13 87.1 8.8 146 37-184 27-202 (213)
353 cd03295 ABC_OpuCA_Osmoprotecti 98.8 1.8E-08 3.9E-13 89.1 8.8 54 129-183 152-208 (242)
354 TIGR01189 ccmA heme ABC export 98.8 2.5E-08 5.4E-13 85.3 9.4 45 129-173 144-190 (198)
355 TIGR03265 PhnT2 putative 2-ami 98.8 1.3E-08 2.8E-13 94.5 8.2 139 28-182 26-206 (353)
356 PRK13635 cbiO cobalt transport 98.8 1.1E-08 2.4E-13 92.2 7.5 159 21-184 22-213 (279)
357 cd03257 ABC_NikE_OppD_transpor 98.8 1.8E-08 3.9E-13 88.2 8.6 50 21-73 20-69 (228)
358 COG4618 ArpD ABC-type protease 98.8 6.2E-09 1.3E-13 97.0 5.8 139 19-171 349-533 (580)
359 cd03256 ABC_PhnC_transporter A 98.8 1.8E-08 4E-13 89.0 8.6 54 129-183 161-217 (241)
360 cd03297 ABC_ModC_molybdenum_tr 98.8 1.9E-08 4.2E-13 87.1 8.6 54 129-183 148-204 (214)
361 PTZ00111 DNA replication licen 98.8 1.2E-07 2.7E-12 95.5 15.3 73 130-202 557-657 (915)
362 PRK10247 putative ABC transpor 98.8 7.5E-09 1.6E-13 90.4 6.0 159 21-184 22-210 (225)
363 PRK11831 putative ABC transpor 98.8 1.7E-08 3.8E-13 90.6 8.4 53 129-182 160-215 (269)
364 PRK10771 thiQ thiamine transpo 98.8 1.6E-08 3.5E-13 88.7 8.1 150 29-182 22-201 (232)
365 TIGR03258 PhnT 2-aminoethylpho 98.8 1.6E-08 3.4E-13 94.2 8.3 147 22-184 21-212 (362)
366 PRK13632 cbiO cobalt transport 98.8 1.8E-08 4E-13 90.5 8.5 158 21-183 24-214 (271)
367 COG1122 CbiO ABC-type cobalt t 98.8 3.5E-08 7.6E-13 85.8 9.8 155 21-185 19-213 (235)
368 cd03260 ABC_PstB_phosphate_tra 98.8 2.7E-08 5.9E-13 87.0 9.1 53 129-182 158-211 (227)
369 PRK13638 cbiO cobalt transport 98.8 9.9E-09 2.2E-13 92.2 6.3 158 21-184 16-209 (271)
370 TIGR02142 modC_ABC molybdenum 98.8 2.1E-08 4.6E-13 93.4 8.7 138 37-182 26-203 (354)
371 PRK13644 cbiO cobalt transport 98.8 2E-08 4.3E-13 90.4 8.2 159 21-184 17-208 (274)
372 PRK09536 btuD corrinoid ABC tr 98.8 1.5E-08 3.3E-13 95.3 7.6 159 21-183 18-211 (402)
373 PRK09452 potA putrescine/sperm 98.8 2E-08 4.3E-13 93.9 8.3 154 24-182 32-216 (375)
374 PRK11247 ssuB aliphatic sulfon 98.8 5.5E-09 1.2E-13 92.9 4.3 155 20-183 26-206 (257)
375 COG1119 ModF ABC-type molybden 98.8 2.9E-08 6.3E-13 84.6 8.4 53 129-181 188-244 (257)
376 PRK11144 modC molybdate transp 98.8 1.7E-08 3.7E-13 93.9 7.7 139 37-183 27-201 (352)
377 COG2274 SunT ABC-type bacterio 98.8 6.7E-09 1.5E-13 103.8 5.0 139 20-172 487-670 (709)
378 cd03251 ABCC_MsbA MsbA is an e 98.8 2E-08 4.4E-13 88.3 7.5 54 129-184 155-209 (234)
379 TIGR03411 urea_trans_UrtD urea 98.8 2.3E-08 5.1E-13 88.3 7.9 55 129-184 160-215 (242)
380 PRK10619 histidine/lysine/argi 98.8 2.4E-08 5.1E-13 89.1 8.0 55 129-184 169-225 (257)
381 COG4619 ABC-type uncharacteriz 98.8 3.3E-08 7.2E-13 79.2 7.8 46 25-73 22-67 (223)
382 PRK14247 phosphate ABC transpo 98.8 1.4E-08 3E-13 90.3 6.3 55 129-184 163-218 (250)
383 TIGR03005 ectoine_ehuA ectoine 98.8 2.9E-08 6.2E-13 88.3 8.2 55 129-184 163-220 (252)
384 PRK13647 cbiO cobalt transport 98.8 2.7E-08 5.8E-13 89.5 8.1 158 21-182 20-209 (274)
385 COG1137 YhbG ABC-type (unclass 98.7 1.2E-09 2.5E-14 90.0 -0.9 161 13-185 11-213 (243)
386 PRK15112 antimicrobial peptide 98.7 1.6E-08 3.4E-13 90.7 6.3 158 21-184 28-223 (267)
387 PRK13650 cbiO cobalt transport 98.7 2.4E-08 5.1E-13 90.1 7.4 159 21-184 22-213 (279)
388 TIGR02324 CP_lyasePhnL phospho 98.7 3.4E-08 7.4E-13 86.2 8.2 51 129-180 166-218 (224)
389 PRK14250 phosphate ABC transpo 98.7 3.1E-08 6.7E-13 87.5 8.0 157 21-184 18-205 (241)
390 TIGR02982 heterocyst_DevA ABC 98.7 3.9E-08 8.4E-13 85.6 8.5 54 129-184 158-214 (220)
391 PRK11607 potG putrescine trans 98.7 3.1E-08 6.6E-13 92.8 8.3 151 28-183 41-222 (377)
392 PRK10851 sulfate/thiosulfate t 98.7 3.7E-08 8E-13 91.5 8.8 152 28-183 24-209 (353)
393 PRK13648 cbiO cobalt transport 98.7 2.5E-08 5.4E-13 89.6 7.4 155 22-183 25-214 (269)
394 PRK11300 livG leucine/isoleuci 98.7 4.6E-08 1E-12 87.2 9.0 55 129-184 170-227 (255)
395 PRK04132 replication factor C 98.7 5.6E-09 1.2E-13 105.4 3.4 49 2-50 8-56 (846)
396 COG4608 AppF ABC-type oligopep 98.7 7.9E-08 1.7E-12 83.6 9.8 140 21-189 28-188 (268)
397 TIGR03873 F420-0_ABC_ATP propo 98.7 3.4E-08 7.3E-13 88.1 7.7 160 21-184 16-210 (256)
398 PRK11231 fecE iron-dicitrate t 98.7 2.6E-08 5.7E-13 88.7 6.9 55 129-184 155-211 (255)
399 PRK13649 cbiO cobalt transport 98.7 3.7E-08 8E-13 89.0 8.0 54 129-183 162-217 (280)
400 cd03214 ABC_Iron-Siderophores_ 98.7 9.8E-08 2.1E-12 80.3 10.1 143 28-184 21-171 (180)
401 COG1618 Predicted nucleotide k 98.7 8.6E-08 1.9E-12 76.3 8.9 68 131-203 101-173 (179)
402 TIGR03415 ABC_choXWV_ATP choli 98.7 4.8E-08 1E-12 91.2 8.9 53 129-182 181-236 (382)
403 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.7 3.6E-08 7.8E-13 86.9 7.7 52 129-182 156-208 (238)
404 PRK10762 D-ribose transporter 98.7 8.2E-09 1.8E-13 101.0 3.9 158 21-182 19-212 (501)
405 PRK13406 bchD magnesium chelat 98.7 6.4E-07 1.4E-11 88.0 17.0 193 18-238 8-229 (584)
406 cd03369 ABCC_NFT1 Domain 2 of 98.7 3E-08 6.5E-13 85.4 6.9 153 21-184 23-196 (207)
407 TIGR02769 nickel_nikE nickel i 98.7 1.5E-08 3.2E-13 90.9 5.2 50 21-73 26-75 (265)
408 PRK13546 teichoic acids export 98.7 5.7E-08 1.2E-12 86.7 8.9 54 129-183 160-215 (264)
409 TIGR02770 nickel_nikD nickel i 98.7 4.2E-08 9.1E-13 86.0 7.9 54 129-183 142-198 (230)
410 PRK13652 cbiO cobalt transport 98.7 4.6E-08 9.9E-13 88.2 8.4 159 21-183 19-210 (277)
411 cd03254 ABCC_Glucan_exporter_l 98.7 3.2E-08 7E-13 86.6 7.2 54 129-184 156-210 (229)
412 TIGR00972 3a0107s01c2 phosphat 98.7 1.8E-08 4E-13 89.3 5.7 54 129-183 161-215 (247)
413 PRK08939 primosomal protein Dn 98.7 4.7E-08 1E-12 88.8 8.3 54 7-60 121-182 (306)
414 cd03299 ABC_ModC_like Archeal 98.7 4.8E-08 1E-12 85.9 8.2 54 129-183 146-202 (235)
415 cd00267 ABC_ATPase ABC (ATP-bi 98.7 7.9E-08 1.7E-12 79.0 8.9 111 37-172 28-142 (157)
416 PRK13641 cbiO cobalt transport 98.7 4.3E-08 9.3E-13 88.8 7.9 160 21-184 22-218 (287)
417 PF06144 DNA_pol3_delta: DNA p 98.7 1.2E-07 2.6E-12 79.1 10.0 111 127-237 54-172 (172)
418 cd03253 ABCC_ATM1_transporter 98.7 3.9E-08 8.5E-13 86.5 7.4 54 129-184 154-208 (236)
419 PRK13643 cbiO cobalt transport 98.7 4.4E-08 9.5E-13 88.8 7.9 156 21-182 21-215 (288)
420 TIGR03771 anch_rpt_ABC anchore 98.7 1E-07 2.2E-12 83.1 9.8 52 129-181 130-183 (223)
421 TIGR01978 sufC FeS assembly AT 98.7 4.1E-08 8.9E-13 86.8 7.5 53 129-182 161-216 (243)
422 cd03252 ABCC_Hemolysin The ABC 98.7 4.6E-08 1E-12 86.1 7.6 52 129-182 155-207 (237)
423 PRK13639 cbiO cobalt transport 98.7 5.9E-08 1.3E-12 87.4 8.4 151 21-183 17-209 (275)
424 PRK09183 transposase/IS protei 98.7 1.3E-07 2.8E-12 84.1 10.4 61 130-190 164-241 (259)
425 PRK15439 autoinducer 2 ABC tra 98.7 7.4E-09 1.6E-13 101.5 2.7 155 21-182 26-211 (510)
426 KOG2170 ATPase of the AAA+ sup 98.7 4.8E-07 1E-11 79.2 13.5 177 15-220 84-318 (344)
427 PLN03210 Resistant to P. syrin 98.7 5.8E-07 1.3E-11 96.3 17.2 197 9-225 180-389 (1153)
428 PRK10253 iron-enterobactin tra 98.7 2E-08 4.3E-13 90.0 5.0 159 21-183 22-216 (265)
429 PHA00729 NTP-binding motif con 98.7 2.1E-07 4.6E-12 79.8 11.0 29 172-200 110-138 (226)
430 cd03245 ABCC_bacteriocin_expor 98.7 5.6E-08 1.2E-12 84.6 7.7 54 129-184 157-211 (220)
431 PRK09544 znuC high-affinity zi 98.7 8.9E-08 1.9E-12 85.0 9.1 147 28-183 26-193 (251)
432 cd03248 ABCC_TAP TAP, the Tran 98.7 3.8E-08 8.3E-13 86.0 6.6 45 129-173 167-212 (226)
433 PRK15056 manganese/iron transp 98.7 1E-07 2.2E-12 85.7 9.5 52 129-181 159-212 (272)
434 PRK13636 cbiO cobalt transport 98.7 5.2E-08 1.1E-12 88.1 7.6 150 21-183 21-214 (283)
435 PRK10744 pstB phosphate transp 98.7 2.9E-08 6.3E-13 88.7 5.9 54 129-183 173-227 (260)
436 PRK14262 phosphate ABC transpo 98.7 1.1E-07 2.3E-12 84.6 9.4 54 129-183 163-217 (250)
437 TIGR01187 potA spermidine/putr 98.7 5.3E-08 1.1E-12 89.7 7.7 54 129-183 117-173 (325)
438 PRK14267 phosphate ABC transpo 98.7 2.4E-08 5.2E-13 88.9 5.3 54 129-183 166-220 (253)
439 cd03244 ABCC_MRP_domain2 Domai 98.7 4E-08 8.7E-13 85.6 6.3 45 129-173 156-201 (221)
440 PRK13634 cbiO cobalt transport 98.7 6.6E-08 1.4E-12 87.7 7.9 160 21-184 22-219 (290)
441 PRK13549 xylose transporter AT 98.7 1.2E-08 2.6E-13 100.0 3.2 159 20-182 19-214 (506)
442 PF03266 NTPase_1: NTPase; In 98.7 3E-08 6.5E-13 82.0 5.1 62 130-194 95-163 (168)
443 PRK13642 cbiO cobalt transport 98.7 6.4E-08 1.4E-12 87.3 7.6 156 21-182 22-211 (277)
444 PRK13640 cbiO cobalt transport 98.7 6.2E-08 1.3E-12 87.6 7.5 54 129-184 160-216 (282)
445 PF05729 NACHT: NACHT domain 98.7 3E-07 6.4E-12 76.0 11.1 74 130-203 81-164 (166)
446 PRK14273 phosphate ABC transpo 98.7 4E-08 8.8E-13 87.5 6.2 55 129-184 167-222 (254)
447 PRK14242 phosphate transporter 98.7 5.6E-08 1.2E-12 86.5 7.1 55 129-184 166-221 (253)
448 PRK13645 cbiO cobalt transport 98.7 7.2E-08 1.6E-12 87.5 7.9 55 129-184 167-224 (289)
449 PRK14259 phosphate ABC transpo 98.7 9.8E-08 2.1E-12 85.7 8.6 56 129-185 171-227 (269)
450 PRK10575 iron-hydroxamate tran 98.6 9.8E-08 2.1E-12 85.5 8.5 55 129-184 164-221 (265)
451 TIGR02868 CydC thiol reductant 98.6 2.4E-08 5.3E-13 98.5 4.9 135 21-169 350-528 (529)
452 PRK13637 cbiO cobalt transport 98.6 1.1E-07 2.4E-12 86.1 8.8 160 21-184 22-218 (287)
453 PRK09700 D-allose transporter 98.6 2.5E-08 5.5E-13 97.8 4.9 159 20-182 19-216 (510)
454 PRK10419 nikE nickel transport 98.6 8.4E-08 1.8E-12 86.1 7.9 54 129-183 168-224 (268)
455 PRK13646 cbiO cobalt transport 98.6 1E-07 2.3E-12 86.3 8.6 159 21-183 22-218 (286)
456 PRK14239 phosphate transporter 98.6 4.6E-08 9.9E-13 87.0 6.1 54 129-183 165-219 (252)
457 COG1135 AbcC ABC-type metal io 98.6 1.9E-07 4.2E-12 82.2 9.7 158 21-183 21-214 (339)
458 PRK14237 phosphate transporter 98.6 1.3E-07 2.8E-12 84.8 8.9 54 129-183 180-234 (267)
459 PRK10536 hypothetical protein; 98.6 5.2E-07 1.1E-11 78.6 12.2 134 15-169 57-212 (262)
460 PRK14240 phosphate transporter 98.6 6.1E-08 1.3E-12 86.1 6.7 54 129-183 163-217 (250)
461 PRK04841 transcriptional regul 98.6 4.9E-06 1.1E-10 87.6 22.1 213 1-233 1-227 (903)
462 PRK14270 phosphate ABC transpo 98.6 1.6E-07 3.5E-12 83.4 9.3 54 129-183 164-218 (251)
463 PRK14274 phosphate ABC transpo 98.6 1.5E-07 3.2E-12 84.1 9.0 55 129-184 172-227 (259)
464 PRK10418 nikD nickel transport 98.6 1.5E-07 3.2E-12 83.8 9.0 54 129-183 157-213 (254)
465 PF13401 AAA_22: AAA domain; P 98.6 2.8E-08 6.1E-13 78.9 3.9 36 132-169 89-125 (131)
466 PRK14246 phosphate ABC transpo 98.6 5.1E-08 1.1E-12 86.9 5.9 55 129-184 170-225 (257)
467 PRK14253 phosphate ABC transpo 98.6 5.2E-08 1.1E-12 86.5 5.9 54 129-183 162-216 (249)
468 PRK13631 cbiO cobalt transport 98.6 1E-07 2.3E-12 87.4 8.1 50 21-73 41-90 (320)
469 PRK15079 oligopeptide ABC tran 98.6 8.9E-08 1.9E-12 88.3 7.6 152 22-184 37-235 (331)
470 PRK14256 phosphate ABC transpo 98.6 1.6E-07 3.6E-12 83.4 9.1 55 129-184 165-220 (252)
471 PRK13633 cobalt transporter AT 98.6 3.6E-08 7.8E-13 89.0 4.9 158 21-184 25-217 (280)
472 COG1127 Ttg2A ABC-type transpo 98.6 2.4E-08 5.2E-13 84.8 3.4 55 16-73 18-72 (263)
473 PRK14248 phosphate ABC transpo 98.6 6.8E-08 1.5E-12 86.7 6.6 54 129-183 181-235 (268)
474 PRK03695 vitamin B12-transport 98.6 1E-07 2.3E-12 84.4 7.6 54 130-184 151-206 (248)
475 COG1123 ATPase components of v 98.6 9.1E-08 2E-12 91.4 7.5 155 20-182 305-501 (539)
476 PRK11701 phnK phosphonate C-P 98.6 1.6E-07 3.5E-12 83.8 8.8 53 129-182 168-223 (258)
477 COG4586 ABC-type uncharacteriz 98.6 1.1E-07 2.3E-12 82.2 7.1 60 128-188 172-234 (325)
478 COG4161 ArtP ABC-type arginine 98.6 2.4E-07 5.2E-12 73.8 8.5 187 9-199 5-241 (242)
479 COG1484 DnaC DNA replication p 98.6 3.7E-07 7.9E-12 80.8 10.6 105 33-171 104-210 (254)
480 COG1220 HslU ATP-dependent pro 98.6 3.2E-07 7E-12 81.5 10.0 106 130-235 250-403 (444)
481 PRK09984 phosphonate/organopho 98.6 1.4E-07 3E-12 84.4 8.0 53 129-182 169-224 (262)
482 PRK14272 phosphate ABC transpo 98.6 6.1E-08 1.3E-12 86.2 5.7 55 129-184 165-220 (252)
483 cd03289 ABCC_CFTR2 The CFTR su 98.6 3.7E-08 8E-13 88.3 4.2 53 129-183 155-208 (275)
484 PRK10982 galactose/methyl gala 98.6 3E-08 6.4E-13 96.9 3.8 158 21-182 13-205 (491)
485 PRK13651 cobalt transporter AT 98.6 1.4E-07 3E-12 86.0 8.0 53 129-182 182-236 (305)
486 PRK14244 phosphate ABC transpo 98.6 2.7E-07 5.8E-12 82.0 9.5 54 129-183 166-220 (251)
487 PRK14251 phosphate ABC transpo 98.6 5.9E-08 1.3E-12 86.2 5.2 55 129-184 164-219 (251)
488 PRK11176 lipid transporter ATP 98.6 7.3E-08 1.6E-12 96.3 6.3 138 21-171 358-540 (582)
489 PRK11174 cysteine/glutathione 98.6 7.6E-08 1.6E-12 96.2 6.4 130 28-171 372-545 (588)
490 TIGR01257 rim_protein retinal- 98.6 1.4E-07 2.9E-12 103.7 8.7 134 37-183 1968-2142(2272)
491 PRK14238 phosphate transporter 98.6 3.1E-07 6.6E-12 82.6 9.7 54 129-183 184-238 (271)
492 PRK11308 dppF dipeptide transp 98.6 1.9E-07 4.2E-12 85.9 8.2 153 21-184 30-228 (327)
493 cd03288 ABCC_SUR2 The SUR doma 98.6 1.4E-07 3.1E-12 84.1 7.1 52 129-182 173-225 (257)
494 PRK14241 phosphate transporter 98.6 3E-07 6.5E-12 82.0 9.2 55 129-184 165-220 (258)
495 PRK15064 ABC transporter ATP-b 98.6 6.7E-08 1.5E-12 95.3 5.4 154 22-184 335-508 (530)
496 PRK14261 phosphate ABC transpo 98.6 3.2E-07 7E-12 81.6 9.1 54 129-183 166-220 (253)
497 PRK09473 oppD oligopeptide tra 98.6 1.8E-07 3.8E-12 86.3 7.7 54 129-183 178-234 (330)
498 PRK14269 phosphate ABC transpo 98.6 2.4E-07 5.2E-12 82.1 8.2 54 129-183 159-213 (246)
499 PRK15177 Vi polysaccharide exp 98.6 3E-07 6.5E-12 79.5 8.7 53 129-182 121-174 (213)
500 PRK14263 phosphate ABC transpo 98.6 2.9E-07 6.3E-12 82.2 8.8 56 129-185 166-222 (261)
No 1
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-57 Score=383.73 Aligned_cols=323 Identities=54% Similarity=0.910 Sum_probs=312.1
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
|+|++||||++++.++++++....++.....+.+||+++|||+|+||-|.+.++.+++++++.....+..+.| .+|.++
T Consensus 1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~-~tpS~k 79 (351)
T KOG2035|consen 1 MLWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF-TTPSKK 79 (351)
T ss_pred CcchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE-ecCCCc
Confidence 8999999999999999999999999999888999999999999999999999999999999999999999999 899999
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
..++ ...++++|++++|++.|.+++..++++++++++..++...++..++|++|.|+|.|+.++|.+|.++||.+..+
T Consensus 80 klEi--stvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 80 KLEI--STVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred eEEE--EEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 8999 99999999999999999999999999999999999988778889999999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~ 240 (365)
+++|++||..+++.++|+|||..++++.|+++++..++.+++.++|+.++.+.+..|++.++||+|+|+-+|+.++..+.
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCC-CCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017844 241 PFKDN-QAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAY 319 (365)
Q Consensus 241 ~~~~~-~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~ 319 (365)
..+.+ ..+..+||+..+.++++.|.+++++..+.++++.+|+|+.++++|..|+..+.++|+.+.+...+.++.+++++
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~~~d~~~k~~~~~~Aa~ 317 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLLKCDTQLKLEVIQHAAK 317 (351)
T ss_pred cccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 77766 57889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHH
Q 017844 320 YVSISFQ 326 (365)
Q Consensus 320 ~~~~~~~ 326 (365)
|+||++.
T Consensus 318 yEhRl~l 324 (351)
T KOG2035|consen 318 YEHRLRL 324 (351)
T ss_pred HHHHHhh
Confidence 9999764
No 2
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.6e-48 Score=368.66 Aligned_cols=334 Identities=19% Similarity=0.243 Sum_probs=273.0
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+++++.|++++..++.+| +||+||+|+||||+|+.+|+.++|..... ..||+.
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pCg~ 75 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS---------ANPCND 75 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------cccCCC
Confidence 59999999999999999999999999999999999 89999999999999999999998865321 467777
Q ss_pred ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+.+ +++.+.+. .....++++++.+.. .+ ..++++|+||||+|+|+.+++++|+++||++
T Consensus 76 C~~C--~~i~~g~~~d~~eidaas~--~~v~~iR~l~~~~~~-~p----~~~~~kV~iIDE~~~ls~~a~naLLk~LEep 146 (509)
T PRK14958 76 CENC--REIDEGRFPDLFEVDAASR--TKVEDTRELLDNIPY-AP----TKGRFKVYLIDEVHMLSGHSFNALLKTLEEP 146 (509)
T ss_pred CHHH--HHHhcCCCceEEEEccccc--CCHHHHHHHHHHHhh-cc----ccCCcEEEEEEChHhcCHHHHHHHHHHHhcc
Confidence 7666 55544444 44544322 222346666655443 22 3568899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.+++||++|+++.+++++|+|||..++|.+++.+++.+++.+++.++|+.++++++..|++.++||+|.|++++++++.
T Consensus 147 p~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia 226 (509)
T PRK14958 147 PSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIA 226 (509)
T ss_pred CCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------hC
Q 017844 238 QQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------RL 305 (365)
Q Consensus 238 ~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~---------~~ 305 (365)
++ +.++.++ .+.+...+..++++++++..+ +...+...+.+++..|.++..++.++...+.+ .+
T Consensus 227 ~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~~----d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~ 302 (509)
T PRK14958 227 YGNGKVLIADVKTMLGTIEPLLLFDILEALAAK----AGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEAL 302 (509)
T ss_pred cCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc
Confidence 64 3455443 334556678899999999874 34556667788889999999999998887776 12
Q ss_pred CHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844 306 DAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS 358 (365)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 358 (365)
.......+..++..++....+.+|++.+... ..++.+.+|+. +||+||||++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~ 355 (509)
T PRK14958 303 IENDSEQLRQLAKLLDREDVQLFYQIGLIGQ-RDLAYSPTPQTGFEMTLLRMLA 355 (509)
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhccCCChhHHHHHHHHHHHh
Confidence 2334567888888888888888888866554 46666666766 9999999996
No 3
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.4e-47 Score=366.50 Aligned_cols=336 Identities=17% Similarity=0.227 Sum_probs=266.4
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+++++.|++++..++++| +||+||+|+||||+++.+++.++|..... ..||+.
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~---------~~PCG~ 75 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT---------SQPCGV 75 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC---------CCCCcc
Confidence 48999999999999999999999999999999999 89999999999999999999998864211 346666
Q ss_pred ceecccccccccc---ceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSAN---HVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+. ++++...+. .....++++++... ..+ ..++++|+||||+|+|+..++|.|+++||++
T Consensus 76 C~sC--r~I~~G~h~DviEIDAas~--rgVDdIReLIe~a~-~~P----~~gr~KVIIIDEah~LT~~A~NALLKtLEEP 146 (830)
T PRK07003 76 CRAC--REIDEGRFVDYVEMDAASN--RGVDEMAALLERAV-YAP----VDARFKVYMIDEVHMLTNHAFNAMLKTLEEP 146 (830)
T ss_pred cHHH--HHHhcCCCceEEEeccccc--ccHHHHHHHHHHHH-hcc----ccCCceEEEEeChhhCCHHHHHHHHHHHHhc
Confidence 6555 4444333 344444322 12234666665543 223 2567899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.+++||++|++..+++++|+|||+.++|.+++.+++.++|++++.++|+.++++++..|++.++||+|+++++++++..
T Consensus 147 P~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia 226 (830)
T PRK07003 147 PPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIA 226 (830)
T ss_pred CCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred cC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h------
Q 017844 238 QQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R------ 304 (365)
Q Consensus 238 ~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~------ 304 (365)
++ +.++.+. .+.+......++++++.++.+ +..++...+.++...|.+...++.+|...+.+ .
T Consensus 227 ~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~~----d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~ 302 (830)
T PRK07003 227 YSANEVTETAVSGMLGALDQTYMVRLLDALAAG----DGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASV 302 (830)
T ss_pred hccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 54 3444332 222333345688999998874 45677777888888999999998888887776 1
Q ss_pred CC-HHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844 305 LD-AEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP 360 (365)
Q Consensus 305 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 360 (365)
.+ .....++..++..++....|.+|++.+.... -++...+++. +||+||||++-.
T Consensus 303 ~~~~~e~~~~~~~a~~~s~~~l~~~~qi~l~g~~-el~~ap~~~~~~Em~llr~l~~~ 359 (830)
T PRK07003 303 LDEWPEAADLRRFAELLSPEQVQLFYQIATVGRG-ELGLAPDEYAGFTMTLLRMLAFE 359 (830)
T ss_pred ccccchHHHHHHHHHhCCHHHHHHHHHHHHhHHH-HhhcCCCHHHHHHHHHHHHhcCC
Confidence 11 1235688888999999889999988555544 4445555555 999999998653
No 4
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-47 Score=358.35 Aligned_cols=336 Identities=22% Similarity=0.310 Sum_probs=269.4
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
..+||||++|++++||+.+.+.|++++..+++.| ++|+||.|+||||+||.+|+.++|..... ..||+.|
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~---------~ePC~~C 76 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPT---------AEPCGKC 76 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCC---------CCcchhh
Confidence 5789999999999999999999999999999999 99999999999999999999999876421 5788888
Q ss_pred eeccccccccccceecCCCCcCccc-hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
..| ..+..+.++++..-|..... -..+|++.+.. .+.| ..++++|+||||+|+|+.+++|+|||+|||||.+
T Consensus 77 ~~C--k~I~~g~~~DviEiDaASn~gVddiR~i~e~v-~y~P----~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~h 149 (515)
T COG2812 77 ISC--KEINEGSLIDVIEIDAASNTGVDDIREIIEKV-NYAP----SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSH 149 (515)
T ss_pred hhh--HhhhcCCcccchhhhhhhccChHHHHHHHHHh-ccCC----ccccceEEEEecHHhhhHHHHHHHhcccccCccC
Confidence 777 66666666655543332221 12466666554 3333 4789999999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~ 240 (365)
+.|||+|+++.+++++++|||+.+.|..++.+++...|..++.++++.++++++..|++.++|++|+++++|+++...+.
T Consensus 150 V~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~ 229 (515)
T COG2812 150 VKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE 229 (515)
T ss_pred eEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred -CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh------------C
Q 017844 241 -PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR------------L 305 (365)
Q Consensus 241 -~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~------------~ 305 (365)
.++.+. .+.+......+.+++..++.+ +..++...+.++++.|.++..++.++..++.+. +
T Consensus 230 ~~It~~~v~~~lG~~~~~~~~~~~~~i~~~----d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~ 305 (515)
T COG2812 230 GEITLESVRDMLGLTDIEKLLSLLEAILKG----DAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQL 305 (515)
T ss_pred CcccHHHHHHHhCCCCHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhc
Confidence 344433 334445567788889898874 456677778888899999999999999988651 1
Q ss_pred CHHHHH-HHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 306 DAEIKH-EVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 306 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
...... .+...+..++....+.++++ ++.....++.+.++++ ++|+++|++..
T Consensus 306 ~~~~~~~~~~~~a~~~~~~~l~~~~~~-~~~~~~e~~~s~~~~~~~E~~lirl~~~ 360 (515)
T COG2812 306 NTTEIEERTKELASQISVLNLQRLYQL-LLPGLKELKRSLSPRLGLEMTLIRLLEA 360 (515)
T ss_pred cchhhhHHHHHHHHhcCHHHHHHHHHH-HHHHHHHhhcCcchhHHHHHHHHHHHhh
Confidence 111112 35566666766656666665 3333444555555555 99999999865
No 5
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-46 Score=354.96 Aligned_cols=335 Identities=19% Similarity=0.263 Sum_probs=263.6
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
|.|++||||++|++++||+.+++.|++++..++.+| ++|+||+|+||||+|+.+|+.++|..... ..||+
T Consensus 1 ~~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~---------~~pCg 71 (491)
T PRK14964 1 MNLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPT---------SDPCG 71 (491)
T ss_pred CChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCC---------CCCcc
Confidence 889999999999999999999999999999999998 99999999999999999999998864321 35666
Q ss_pred cceeccccccc---cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844 80 RNIDLELTTLS---SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (365)
Q Consensus 80 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~ 156 (365)
.|..| ..+. +.+.+++.+.+.. ....++++++... ..++ .++++|+||||+|+|+.+++++|+++||+
T Consensus 72 ~C~~C--~~i~~~~~~Dv~eidaas~~--~vddIR~Iie~~~-~~P~----~~~~KVvIIDEah~Ls~~A~NaLLK~LEe 142 (491)
T PRK14964 72 TCHNC--ISIKNSNHPDVIEIDAASNT--SVDDIKVILENSC-YLPI----SSKFKVYIIDEVHMLSNSAFNALLKTLEE 142 (491)
T ss_pred ccHHH--HHHhccCCCCEEEEecccCC--CHHHHHHHHHHHH-hccc----cCCceEEEEeChHhCCHHHHHHHHHHHhC
Confidence 66555 4443 3445556554322 2335777766643 3443 56889999999999999999999999999
Q ss_pred hcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (365)
Q Consensus 157 ~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~ 236 (365)
+++++.||++|++..+++++++|||+.+.|.+++.+++.+++.+++.++|+.+++++++.|++.++||+|.+++.|++++
T Consensus 143 Pp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli 222 (491)
T PRK14964 143 PAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAA 222 (491)
T ss_pred CCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------
Q 017844 237 VQQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------- 303 (365)
Q Consensus 237 ~~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~---------- 303 (365)
.+++ .++.+. .+.+...+..+++++++++.+ +..++...+.+++..+ +|..+++.+..++..
T Consensus 223 ~y~~~~It~e~V~~llg~~~~~~If~L~~aI~~~----d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~ 297 (491)
T PRK14964 223 IYSNNKISEKSVRDLLGCVDKHILEDLVEAILLG----DAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEI 297 (491)
T ss_pred HhcCCCCCHHHHHHHHccCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccc
Confidence 7654 344333 222333456799999999985 4566777777887765 788888877765543
Q ss_pred --hCCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844 304 --RLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP 360 (365)
Q Consensus 304 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 360 (365)
.++++.+..+.+.+. ++....+.+++. +++.....+.+.+|+. +||.|||++..+
T Consensus 298 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~~e~~~~rl~~~~ 355 (491)
T PRK14964 298 DFLLGEDLITRIKSLKI-GSTIFLSRLWQM-LLKGIQEVKSSTCVKQAAEMMIIRLCYLS 355 (491)
T ss_pred cccCCHHHHHHHHHHhC-CCHHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence 123445566666655 665544444544 3444455667777777 999999998653
No 6
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.2e-47 Score=360.15 Aligned_cols=340 Identities=18% Similarity=0.242 Sum_probs=263.1
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+++++.|++++..++.+| +||+||+|+||||+++.+++.++|...... .+ ....||+.
T Consensus 5 vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~--~g--~~~~PCG~ 80 (700)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE--GG--ITAQPCGQ 80 (700)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--cc--CCCCCCcc
Confidence 48999999999999999999999999999999999 899999999999999999999998542110 00 01356777
Q ss_pred ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+.| +++.+.+. .....++++++.+... + ..++++|+||||+|+|+..++|.||++||++
T Consensus 81 C~sC--~~I~aG~hpDviEIdAas~--~gVDdIReLie~~~~~-P----~~gr~KViIIDEah~Ls~~AaNALLKTLEEP 151 (700)
T PRK12323 81 CRAC--TEIDAGRFVDYIEMDAASN--RGVDEMAQLLDKAVYA-P----TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151 (700)
T ss_pred cHHH--HHHHcCCCCcceEeccccc--CCHHHHHHHHHHHHhc-h----hcCCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence 6665 44444444 44444321 2223466766655432 2 2567899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.||++|+++.+++++|+|||+.+.|.+++.+++.++|++++.++|+.+++++++.|++.++|++|+++++++++..
T Consensus 152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIA 231 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----hC-----
Q 017844 238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----RL----- 305 (365)
Q Consensus 238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~~----- 305 (365)
++. .++.+. .+.+......++++++.+..+ +.......+.++...|.++..++.++...+.+ +.
T Consensus 232 ~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~~----d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~ 307 (700)
T PRK12323 232 YSAGNVSEEAVRGMLGAIDQSYLVRLLDALAAE----DGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAV 307 (700)
T ss_pred hccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhc
Confidence 443 333222 122222345677888887753 34455555666778899988888888877665 11
Q ss_pred --CHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 306 --DAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 306 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
+.....++.+++..++....|.+|++ +++-.+.++.+.+++. +||+||||++-
T Consensus 308 ~~~~~~~~~~~~~a~~~s~~~l~~~~q~-~~~~~~el~~a~~~~~~~Em~llrll~~ 363 (700)
T PRK12323 308 QDDWPEADDIRRLAGRFDAQEVQLFYQI-ANLGRSELALAPDEYAGFTMTLLRMLAF 363 (700)
T ss_pred ccccchHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence 11136778889999998888888987 4444455566666666 99999999875
No 7
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-46 Score=320.92 Aligned_cols=291 Identities=29% Similarity=0.424 Sum_probs=235.3
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+.|++||||++|++++||+.+++.|+..+.++..||++||||||||||+.+++++++++|+... ||+-
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~------------~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLF------------PCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCcccc------------ccch
Confidence 4699999999999999999999999999999888899999999999999999999999885532 2211
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCC----CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~ 156 (365)
.+.++++..+.. .+++.++.++...... ......++|+|+||+|.|+.++|++|+++||.
T Consensus 92 --------------l~lnaSderGis--vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~ 155 (346)
T KOG0989|consen 92 --------------LELNASDERGIS--VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED 155 (346)
T ss_pred --------------hhhccccccccc--chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc
Confidence 122233222211 3445454444332211 11245679999999999999999999999999
Q ss_pred hcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (365)
Q Consensus 157 ~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~ 236 (365)
++.+++||++||..++++.++.|||+.++|+++..+.+...|+.|+.+||+.+++++++.|+..++||+|+|+..||+++
T Consensus 156 ~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 156 FSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLS 235 (346)
T ss_pred cccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh--CCHHHHH
Q 017844 237 VQQYPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR--LDAEIKH 311 (365)
Q Consensus 237 ~~~~~~~~~~---~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~--~~~~~~~ 311 (365)
..+..++... .+.+...+..+.++++.....++ .+....+.+++..|.+|..+++|++..+... .++..+.
T Consensus 236 ~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~----~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~ 311 (346)
T KOG0989|consen 236 LLGKRITTSLVNEELAGVVPDEKLLDLLELALSADT----PNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKA 311 (346)
T ss_pred ccCcccchHHHHHHHhccCCHHHHHHHHHHHHccCh----HHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHH
Confidence 9777666322 34445566777888888777544 4555566788899999999999999999884 3456677
Q ss_pred HHHHHHHHhhhh
Q 017844 312 EVCHWAAYYVSI 323 (365)
Q Consensus 312 ~~~~~~~~~~~~ 323 (365)
.+...+..-+.+
T Consensus 312 ~~~~kl~~~~~~ 323 (346)
T KOG0989|consen 312 QISLKLFTRDKR 323 (346)
T ss_pred HHHHHHHhccch
Confidence 777776665554
No 8
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.4e-46 Score=361.15 Aligned_cols=342 Identities=20% Similarity=0.260 Sum_probs=273.0
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+++++.|++++..++.+| +||+||+|+||||+++.+++.++|...... .+. ...||+.
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~--~~~--~~~pCg~ 80 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ--GGI--TATPCGV 80 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--cCC--CCCCCCc
Confidence 49999999999999999999999999999999999 899999999999999999999998643211 010 0367888
Q ss_pred ceeccccccccccceecCCCCcC-ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844 81 NIDLELTTLSSANHVELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~ 159 (365)
|..| ..+..+.|.++..-+.. ......++++++.+. ..+. .++++|+||||+|+|+..++|.|+++||+++.
T Consensus 81 C~~C--~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~-~~p~----~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~ 153 (618)
T PRK14951 81 CQAC--RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAV-YKPV----QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPE 153 (618)
T ss_pred cHHH--HHHHcCCCCceeecCcccccCHHHHHHHHHHHH-hCcc----cCCceEEEEEChhhCCHHHHHHHHHhcccCCC
Confidence 8777 66666665554433222 122235677776543 3332 56789999999999999999999999999999
Q ss_pred ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
++.||++|+++.+++++++|||..++|.+++.+++.++|++++.++|+.++++++..|++.++||+|.+++++++++.++
T Consensus 154 ~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~ 233 (618)
T PRK14951 154 YLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFG 233 (618)
T ss_pred CeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876654
Q ss_pred C-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH------------h
Q 017844 240 Y-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------R 304 (365)
Q Consensus 240 ~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~------------~ 304 (365)
. .++.+. .+.+...++.++++++++..+ +...+...+.++...|.++..++..+...+.+ .
T Consensus 234 ~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~----d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 309 (618)
T PRK14951 234 SGQLQEAAVRQMLGSVDRSHVFRLIDALAQG----DGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAA 309 (618)
T ss_pred CCCcCHHHHHHHHcCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 3 333222 233344567889999999874 44566677788888999999999999888765 1
Q ss_pred CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 305 LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
.+.....++..++..++....|.+|++.+.... -++...+++. +||+||||+.-
T Consensus 310 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~em~l~r~~~~ 364 (618)
T PRK14951 310 ATDPEAAEVARLAALMPADETQLLYSICLHGRA-ELGLAPDEYAALTMVLLRLLAF 364 (618)
T ss_pred cChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HhccCCCHHHHHHHHHHHHhhC
Confidence 233456778889988888888999988555544 3444445555 99999999854
No 9
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.9e-46 Score=346.03 Aligned_cols=340 Identities=17% Similarity=0.157 Sum_probs=261.6
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+|++||||++|++++||+++++.|+.++..++.+| ++|+||+|+||||+|+.+|+.++|..... ..||+.
T Consensus 7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---------~~pCg~ 77 (484)
T PRK14956 7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---------NEPCNE 77 (484)
T ss_pred hhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---------ccccCC
Confidence 69999999999999999999999999999999998 99999999999999999999998864321 234444
Q ss_pred ceecc-ccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844 81 NIDLE-LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~ 159 (365)
|..|. +....+.+++++.+.... ....++++.+.+.. .+ ..++++|+||||+|+|+.+++++|+++||+++.
T Consensus 78 C~sC~~i~~g~~~dviEIdaas~~--gVd~IReL~e~l~~-~p----~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~ 150 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAASNR--GIENIRELRDNVKF-AP----MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPA 150 (484)
T ss_pred CcHHHHHHccCCccceeechhhcc--cHHHHHHHHHHHHh-hh----hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 43330 022233345555543221 12245666555432 22 245789999999999999999999999999999
Q ss_pred ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
++.||++|+++.+++++|+|||+.+.|.+++.+++.++|++++.++|+.++++++..|++.++||+|+|+++|+++....
T Consensus 151 ~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~ 230 (484)
T PRK14956 151 HIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT 230 (484)
T ss_pred ceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865443
Q ss_pred -CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 017844 240 -YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------- 303 (365)
Q Consensus 240 -~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~------------- 303 (365)
+.++.+. .+.+.+..+.+.++++++...+. ...+...+..++..|.+|..++..+.+++.+
T Consensus 231 ~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~---~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~ 307 (484)
T PRK14956 231 DSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDN---HSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRES 307 (484)
T ss_pred CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhh
Confidence 3344333 22233455667788888876532 3456666778889999999999988887765
Q ss_pred -hCCHHHHHHHHHHHHHhhhhhHHHHhhh--c-ccCC-CCCccccccccc-cccchhcccCCC
Q 017844 304 -RLDAEIKHEVCHWAAYYVSISFQILFIV--P-LVDF-PSPLECSAQAAY-IQPPLIRANSDP 360 (365)
Q Consensus 304 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 360 (365)
.+.++...++...+..++.........+ . ...+ +...+.+.+|+. +|+.++|++.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~~~ 370 (484)
T PRK14956 308 VNFPKEDLQKMKSDFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVEEL 370 (484)
T ss_pred ccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhccc
Confidence 2346677888888888876633322111 0 1111 346788888888 999999998753
No 10
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.2e-46 Score=355.76 Aligned_cols=335 Identities=17% Similarity=0.267 Sum_probs=265.4
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+.+++.|+.++.+++.+| ++|+||+|+||||+|+++|+.++|..... ..||+.
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~---------~~pCg~ 74 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVT---------STPCEV 74 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC---------CCCCcc
Confidence 58999999999999999999999999999999999 89999999999999999999998864211 457777
Q ss_pred ceeccccccccccce---ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANHV---ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+.++ ++.+.+.. ....+++++..... .+ ..++++|+||||+|+|+..++++|+++||++
T Consensus 75 C~sC--~~I~~g~hpDviEIDAAs~~--~VddIReli~~~~y-~P----~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP 145 (702)
T PRK14960 75 CATC--KAVNEGRFIDLIEIDAASRT--KVEDTRELLDNVPY-AP----TQGRFKVYLIDEVHMLSTHSFNALLKTLEEP 145 (702)
T ss_pred CHHH--HHHhcCCCCceEEecccccC--CHHHHHHHHHHHhh-hh----hcCCcEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 7666 555555444 44443221 22346666655432 22 2467899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.||++|+++.+++++++|||..++|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.|++++++++.
T Consensus 146 P~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIa 225 (702)
T PRK14960 146 PEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIA 225 (702)
T ss_pred CCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred cC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h------
Q 017844 238 QQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R------ 304 (365)
Q Consensus 238 ~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~------ 304 (365)
++ +.++.+. .+.+...+..++++++++.+++ ...+...+.++...|.++..++..+...+.+ .
T Consensus 226 yg~g~IT~edV~~lLG~~d~e~IfdLldAI~k~d----~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~ 301 (702)
T PRK14960 226 YGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQ----REKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELG 301 (702)
T ss_pred hcCCCcCHHHHHHHhccCCHHHHHHHHHHHHhcC----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 54 3344333 2233344567999999999853 4556666777888899999888877766554 1
Q ss_pred --CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 305 --LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
.+......+..++..++....+.++++ ++.-...++.+.+|++ +||+||||+.-
T Consensus 302 ~~~~~~~~~~~~~la~~~s~~~l~~~~qi-~l~~~~~l~~s~~~r~~lEm~llrl~~~ 358 (702)
T PRK14960 302 LKYSEEINAKILQLSKLISAQDLQLYYQI-ACKGRSDLQLAVTQEQGFEMCVLRLLAF 358 (702)
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhccCCChhHHHHHHHHHHHhC
Confidence 223456677788888887777777776 4444455666666666 99999999864
No 11
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.6e-45 Score=345.16 Aligned_cols=339 Identities=17% Similarity=0.207 Sum_probs=265.5
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
.+|++||||++|++++||+.+++.|+.++..++.+| ++|+||+|+||||+|+++|+.++|.....- +.. ..||+
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~---~~~--~~~C~ 83 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITE---NTT--IKTCE 83 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccc---CcC--cCCCC
Confidence 379999999999999999999999999999999987 999999999999999999999988642110 000 34566
Q ss_pred cceecccccccc---ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844 80 RNIDLELTTLSS---ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (365)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~ 156 (365)
.|..| ..+.. .+.+++.+.+. .....+++++.... ..++ .++++|+||||+|+|+..++++|+++||+
T Consensus 84 ~C~~C--~~i~~~~h~Dv~eidaas~--~~vd~Ir~iie~a~-~~P~----~~~~KVvIIDEa~~Ls~~a~naLLk~LEe 154 (507)
T PRK06645 84 QCTNC--ISFNNHNHPDIIEIDAASK--TSVDDIRRIIESAE-YKPL----QGKHKIFIIDEVHMLSKGAFNALLKTLEE 154 (507)
T ss_pred CChHH--HHHhcCCCCcEEEeeccCC--CCHHHHHHHHHHHH-hccc----cCCcEEEEEEChhhcCHHHHHHHHHHHhh
Confidence 55554 33333 34444544322 22335677665543 3343 56789999999999999999999999999
Q ss_pred hcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (365)
Q Consensus 157 ~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~ 236 (365)
++.++.||++|+...+++++++|||+.++|.+++.+++.++++++++++|+.+++++++.|++.++||+|.|++.|++++
T Consensus 155 pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai 234 (507)
T PRK06645 155 PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAA 234 (507)
T ss_pred cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hcCC----CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------
Q 017844 237 VQQY----PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------- 303 (365)
Q Consensus 237 ~~~~----~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~------- 303 (365)
.++. .++.+. .+.+...++.++++++++..+ +...+...+.+++..|.+|..++..+.+++..
T Consensus 235 ~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~~----d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~ 310 (507)
T PRK06645 235 SMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIHR----ETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKML 310 (507)
T ss_pred HhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6543 344433 334556678999999999984 55777888899999999999998877765543
Q ss_pred -----hCCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844 304 -----RLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS 358 (365)
Q Consensus 304 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 358 (365)
.+.+..+.++..++.+++.+..+.++++ ++.-....+.+.+|+. +||.|||++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~e~~l~r~~~ 370 (507)
T PRK06645 311 PNYSLPIYESFNDRTKSILDKISLPHLSILWQI-YNKGVGEIKISYNQLTETEMLVIKSIY 370 (507)
T ss_pred cccccccchhHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 1223445677777777776655555554 3333445666666665 9999999874
No 12
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4.1e-45 Score=352.24 Aligned_cols=335 Identities=19% Similarity=0.249 Sum_probs=268.6
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+++++.|+.++..++.+| +||+||+|+||||+|+.+++.++|..... ..||+.
T Consensus 5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---------~~pCg~ 75 (709)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---------GEPCGV 75 (709)
T ss_pred hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---------CCCCcc
Confidence 58999999999999999999999999999999999 89999999999999999999998865321 346666
Q ss_pred ceeccccccccccce---ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANHV---ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+.++ ++...+. .....+++++.... ..+. .++++|+||||+|+|+..+++.|+++||++
T Consensus 76 C~sC--r~i~~g~~~DvlEidaAs~--~gVd~IRelle~a~-~~P~----~gk~KVIIIDEad~Ls~~A~NALLKtLEEP 146 (709)
T PRK08691 76 CQSC--TQIDAGRYVDLLEIDAASN--TGIDNIREVLENAQ-YAPT----AGKYKVYIIDEVHMLSKSAFNAMLKTLEEP 146 (709)
T ss_pred cHHH--HHHhccCccceEEEecccc--CCHHHHHHHHHHHH-hhhh----hCCcEEEEEECccccCHHHHHHHHHHHHhC
Confidence 5554 444444443 3433221 12234666665432 2232 457899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.||++|++..+++++++|||..+.|.+++.+++.++|++++.++|+.++++++..|++.++||+|.++++|++++.
T Consensus 147 p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia 226 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIA 226 (709)
T ss_pred CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h------
Q 017844 238 QQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R------ 304 (365)
Q Consensus 238 ~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~------ 304 (365)
++ +.++.+. .+.+...+..++++++++..+ +...+...+.+++..|.++..++.++..++.+ +
T Consensus 227 ~g~g~It~e~V~~lLG~~d~~~If~LldAL~~~----d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~ 302 (709)
T PRK08691 227 LGSGKVAENDVRQMIGAVDKQYLYELLTGIINQ----DGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSAL 302 (709)
T ss_pred hcCCCcCHHHHHHHHcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhc
Confidence 54 2344332 223333467899999999984 45677778888999999999999999988776 1
Q ss_pred -CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 305 -LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 305 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
.+......+..++..++....+.+|++.+... .-++.+..++. +||+||||+.-
T Consensus 303 ~~~~~~~~~~~~~a~~~~~~~l~~~~q~~l~~~-~~l~~a~~~~~~~Em~llrl~~~ 358 (709)
T PRK08691 303 AHDDPDSDILHRLAQTISGEQIQLYYQIAVHGK-RDLSLAPDEYAGFMMTLLRMLAF 358 (709)
T ss_pred cccchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHhc
Confidence 12234677888888898888888888744444 45555666666 99999999864
No 13
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.4e-44 Score=347.26 Aligned_cols=337 Identities=14% Similarity=0.162 Sum_probs=265.7
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
|.|.+||||++|++++||+++++.|+.++..++.+| ++|+||+|+||||+|+++|+.++|..... ..||+
T Consensus 1 ~al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pCg 71 (584)
T PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---------ATPCG 71 (584)
T ss_pred CcHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---------CCccc
Confidence 557799999999999999999999999999999999 89999999999999999999998864211 34677
Q ss_pred cceeccccccc-----cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844 80 RNIDLELTTLS-----SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154 (365)
Q Consensus 80 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~l 154 (365)
.|..| ..+. +.+.+++...... ....++++...+. ..+. .++++|+||||+|+|+.+++|+|+++|
T Consensus 72 ~C~~C--~~i~~~~~~~~dvieidaas~~--gvd~iRel~~~~~-~~P~----~~~~KVvIIDEah~Lt~~A~NALLK~L 142 (584)
T PRK14952 72 VCESC--VALAPNGPGSIDVVELDAASHG--GVDDTRELRDRAF-YAPA----QSRYRIFIVDEAHMVTTAGFNALLKIV 142 (584)
T ss_pred ccHHH--HHhhcccCCCceEEEecccccc--CHHHHHHHHHHHH-hhhh----cCCceEEEEECCCcCCHHHHHHHHHHH
Confidence 66555 3332 2334445443221 2234566555443 3332 567899999999999999999999999
Q ss_pred hhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (365)
Q Consensus 155 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~ 234 (365)
|+++.++.||++|+++.+++++|+|||+.++|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.++++|++
T Consensus 143 EEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 143 EEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred hcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC--CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh------
Q 017844 235 CRVQQY--PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR------ 304 (365)
Q Consensus 235 ~~~~~~--~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~------ 304 (365)
++.+.. .++.+. .+.+...+..++++++++..+ +...+...+.+++..|.++..++..+..++.+-
T Consensus 223 l~~~~~~~~It~~~v~~llg~~~~~~i~~lv~al~~~----d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~ 298 (584)
T PRK14952 223 LLAGAADTHVTYQRALGLLGATDVALIDDAVDALAAD----DAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAV 298 (584)
T ss_pred HHhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 887642 344333 233444567888999988874 445666667788889999999999888887651
Q ss_pred ----------CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844 305 ----------LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP 360 (365)
Q Consensus 305 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 360 (365)
+.......+...+..|+.....-+++ .+.+-...++...+++. +|+.+++++.++
T Consensus 299 ~~~~~~~l~~~~~~~~~~l~~qa~~~s~~~L~~~i~-~l~~~~~~~~~~~~~rl~LE~llikl~~~~ 364 (584)
T PRK14952 299 PDAAARGVVDAPEDVLERMREQAARIGLATLTRYAE-VVQAGLGEMRGATAPRLLLEVVCARLLLPS 364 (584)
T ss_pred chhhhcccccCCHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHhccCCChHHHHHHHHHHHhccc
Confidence 12345567778888887663333343 34445567778888887 999999998753
No 14
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=325.01 Aligned_cols=292 Identities=25% Similarity=0.384 Sum_probs=241.6
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+||++||||++|++++||+++++.|+.++..++.||++|+||||+||||+|+++|++++++....
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~--------------- 65 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKE--------------- 65 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCcc---------------
Confidence 58999999999999999999999999999999999999999999999999999999987643210
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
.++++++++... ...+++.++.++..... . ..++++|++|||+|.|+..++++|++++|+++..
T Consensus 66 ------------~~~eln~sd~~~--~~~vr~~i~~~~~~~~~-~-~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~ 129 (319)
T PLN03025 66 ------------AVLELNASDDRG--IDVVRNKIKMFAQKKVT-L-PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNT 129 (319)
T ss_pred ------------ceeeeccccccc--HHHHHHHHHHHHhcccc-C-CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCC
Confidence 123444443322 22466777666554321 1 1246799999999999999999999999999888
Q ss_pred eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~ 240 (365)
++||++||...++.++++|||..++|++++.+++..+|..++.++|+.+++++++.+++.++||+|.+++.||.++....
T Consensus 130 t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~ 209 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFG 209 (319)
T ss_pred ceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997665433
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Q 017844 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWA 317 (365)
Q Consensus 241 ~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~~ 317 (365)
.++.+. .+........++++++++.. +++..++..+++++..|++|..|+..+...+.+ .+++..+.++...+
T Consensus 210 ~i~~~~v~~~~~~~~~~~i~~~i~~~~~----~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~~~~~~~~~~~~~~~ 285 (319)
T PLN03025 210 FVNQENVFKVCDQPHPLHVKNIVRNCLK----GKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNYDMPEFLKLEYLREI 285 (319)
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 344332 23344556788888888776 567889999999999999999999999776654 45788889999999
Q ss_pred HHhhhhhHHH
Q 017844 318 AYYVSISFQI 327 (365)
Q Consensus 318 ~~~~~~~~~~ 327 (365)
+.+++|+...
T Consensus 286 ~~~~~~~~~g 295 (319)
T PLN03025 286 GFAHMRICDG 295 (319)
T ss_pred HHHHHHHHCC
Confidence 9999987643
No 15
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.7e-44 Score=349.95 Aligned_cols=332 Identities=19% Similarity=0.251 Sum_probs=260.6
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+.+++.|+..+..++.+| ++|+||+|+||||+|+.+++.++|.... ...||+.
T Consensus 5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~---------~~~pCg~ 75 (647)
T PRK07994 5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI---------TATPCGE 75 (647)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC---------CCCCCCC
Confidence 58999999999999999999999999999999999 8999999999999999999999886321 1457777
Q ss_pred ceecccccccccccee---cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANHVE---LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+.|.+ +.+.+. .....++++++.+.. .+ ..++++|+||||+|+|+..++|+||++||++
T Consensus 76 C~~C--~~i~~g~~~D~ieidaas~--~~VddiR~li~~~~~-~p----~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP 146 (647)
T PRK07994 76 CDNC--REIEQGRFVDLIEIDAASR--TKVEDTRELLDNVQY-AP----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 (647)
T ss_pred CHHH--HHHHcCCCCCceeeccccc--CCHHHHHHHHHHHHh-hh----hcCCCEEEEEechHhCCHHHHHHHHHHHHcC
Confidence 7655 5555454443 433321 222346676665433 22 2567899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.+++||++|+++.+++++|+|||+.++|.+++.+++..+|++++.++|+.++++++..|++.++|++|+|+++++++..
T Consensus 147 p~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia 226 (647)
T PRK07994 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIA 226 (647)
T ss_pred CCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred cC-CCCCCCC--C-CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh---------
Q 017844 238 QQ-YPFKDNQ--A-IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR--------- 304 (365)
Q Consensus 238 ~~-~~~~~~~--~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~--------- 304 (365)
.+ +.++.+. . +...+ ...++++++++..+ +...+...+.++...|.+++.++.++...+.+-
T Consensus 227 ~~~~~it~~~v~~~lg~~d-~~~~~~ll~al~~~----d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~ 301 (647)
T PRK07994 227 SGNGQVTTDDVSAMLGTLD-DDQALSLLEALVEG----DGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAA 301 (647)
T ss_pred hcCCCcCHHHHHHHHccCC-HHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccch
Confidence 53 2333222 1 11222 34577888887763 345566667777888999999999888877651
Q ss_pred ---CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhccc
Q 017844 305 ---LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRAN 357 (365)
Q Consensus 305 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 357 (365)
...+....+..++.+++....+.+|++ ++.-...++....++. +||.||||+
T Consensus 302 ~~~~~~d~~~~l~~la~~~s~~~l~~~~q~-~~~~~~~L~~n~n~~l~lE~~llr~~ 357 (647)
T PRK07994 302 LDNDMADIELRLRELARTLPPEDVQLYYQT-LLIGRKDLPLAPDRRMGVEMTLLRML 357 (647)
T ss_pred hcccchhHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 112233478888888887767777775 5555555566666666 999999984
No 16
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-43 Score=329.82 Aligned_cols=336 Identities=19% Similarity=0.256 Sum_probs=261.0
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+|++||||++|++++||+++++.++.++..++.+| ++|+||+|+||||+|+.+++.+.|..... ..||+.
T Consensus 5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---------~~pc~~ 75 (363)
T PRK14961 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---------SNPCRK 75 (363)
T ss_pred HHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCC
Confidence 48999999999999999999999999999999999 89999999999999999999998754211 356666
Q ss_pred ceeccccccccccceecCCCCcCc-cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844 81 NIDLELTTLSSANHVELSPSDAGF-QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~ 159 (365)
|..| ..+..+.++++..-+... .....+++++..+. ..+ ..++++|+||||+|.++..++++|++++|+++.
T Consensus 76 c~~c--~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~-~~p----~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~ 148 (363)
T PRK14961 76 CIIC--KEIEKGLCLDLIEIDAASRTKVEEMREILDNIY-YSP----SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQ 148 (363)
T ss_pred CHHH--HHHhcCCCCceEEecccccCCHHHHHHHHHHHh-cCc----ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCC
Confidence 6555 444444443332111111 12223555554433 222 246779999999999999999999999999999
Q ss_pred ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
++.||++|++..++.++++|||..++|++++.+++.+++.++++++|+.+++++++.+++.++||+|.|++.+++++..+
T Consensus 149 ~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~ 228 (363)
T PRK14961 149 HIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLG 228 (363)
T ss_pred CeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876654
Q ss_pred C-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h--------
Q 017844 240 Y-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R-------- 304 (365)
Q Consensus 240 ~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~-------- 304 (365)
. .++.+. .+.....+..++++++++..+ +...+...+.+++..|.+|..++..+..++.+ +
T Consensus 229 ~~~It~~~v~~~l~~~~~~~i~~l~~ai~~~----~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~ 304 (363)
T PRK14961 229 KGNINIKNVTDMLGLLNEKQSFLLTDALLKK----DSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNT 304 (363)
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhc
Confidence 2 333332 233445677889999999874 34566666788888899999999988888775 1
Q ss_pred -CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844 305 -LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS 358 (365)
Q Consensus 305 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 358 (365)
..+.....+.+.+..++..-...+++. +......++....+++ +|+.|+|+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~~~~~e~~l~~~~~ 359 (363)
T PRK14961 305 IFIKNYKNQIQKIAQNNKKTNIQLCYQI-LLNGRKELKFAPDQKIGVEMTLLRAIN 359 (363)
T ss_pred ccchHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHccCCCchHHHHHHHHHHHh
Confidence 112256677778877776645544543 4455566777777777 9999999875
No 17
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.8e-44 Score=344.51 Aligned_cols=336 Identities=18% Similarity=0.257 Sum_probs=265.7
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+++++.|..++..++.+| ++|+||+|+||||+|+.+++.++|..... ..||+.
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pcg~ 75 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---------ATPCGV 75 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCC
Confidence 48999999999999999999999999999999999 89999999999999999999998864211 357777
Q ss_pred ceeccccccccccceecCCCCcC-ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844 81 NIDLELTTLSSANHVELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~ 159 (365)
|..| ..+..+.+.++..-+.. ......+++++.... ..+ ..++++|+||||+|+|+.+++|+|+++||+++.
T Consensus 76 C~~C--~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~-~~p----~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 76 CSAC--LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQ-YAP----TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred CHHH--HHHhcCCCCceeEeeccccCCHHHHHHHHHHHh-hCc----ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 7666 44444444443222211 122234666665543 333 356789999999999999999999999999999
Q ss_pred ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
++.||++|+++.+++++++|||+.++|.+++.+++.+++.+++.++|+.++++++..|++.++||+|++++++++++.++
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~ 228 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYG 228 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877664
Q ss_pred C-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h-------C
Q 017844 240 Y-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R-------L 305 (365)
Q Consensus 240 ~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~-------~ 305 (365)
. .++.+. .+.....++.++++++++..++ ...+...+.++...+.++..++..+...+.+ + .
T Consensus 229 ~~~I~~~~v~~~~~~~~~~~i~~ll~al~~~~----~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~ 304 (527)
T PRK14969 229 GGTVNESEVRAMLGAIDQDYLFALLEALLAQD----GAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIAD 304 (527)
T ss_pred CCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence 3 333222 1222223567889999988643 4556666777888899999999988887765 1 1
Q ss_pred CHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844 306 DAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS 358 (365)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 358 (365)
+......+.+++..++....+.+|++ ++.-..-++.+.+|++ +||+||||+.
T Consensus 305 ~~~~~~~~~~~a~~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~r~~~ 357 (527)
T PRK14969 305 DLPERDRLLDLAKRLSPEDIQLYYQI-ALHGRRDLGLAPDEYAGFTMTLLRMLA 357 (527)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHhc
Confidence 22346778888988988877777775 5555556666667777 9999999984
No 18
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-43 Score=347.96 Aligned_cols=335 Identities=20% Similarity=0.271 Sum_probs=255.9
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+|++||||++|++++||+++++.|++++..++++| ++|+||+|+||||+|+++++.++|.... ...||+.
T Consensus 5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~---------~~~pCg~ 75 (944)
T PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGV---------TATPCGV 75 (944)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCC---------CCCCCCC
Confidence 68999999999999999999999999999999999 7999999999999999999999886321 0345555
Q ss_pred ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+.+ +++.+.+. .....++++++.+.. .+ ..++++|+||||+|+|+.+++++|+++||++
T Consensus 76 C~sC--~~i~~g~~~DviEidAas~--~kVDdIReLie~v~~-~P----~~gk~KViIIDEAh~LT~eAqNALLKtLEEP 146 (944)
T PRK14949 76 CSSC--VEIAQGRFVDLIEVDAASR--TKVDDTRELLDNVQY-RP----SRGRFKVYLIDEVHMLSRSSFNALLKTLEEP 146 (944)
T ss_pred chHH--HHHhcCCCceEEEeccccc--cCHHHHHHHHHHHHh-hh----hcCCcEEEEEechHhcCHHHHHHHHHHHhcc
Confidence 5444 33333333 44443321 222346676666543 22 2467899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.+++||++|++..+++++|+|||+.++|.+++.+++.++|++++..+++.++++++..|++.++|++|+|+++++++..
T Consensus 147 P~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala 226 (944)
T PRK14949 147 PEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIA 226 (944)
T ss_pred CCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987664
Q ss_pred cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----hCCHH--
Q 017844 238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----RLDAE-- 308 (365)
Q Consensus 238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~~~~~-- 308 (365)
.+. .++... .+.+......+..+++.+.. .+...+...+..++..|.++..|++.|..++.+ +....
T Consensus 227 ~~~~~It~~~V~~llG~iD~~~V~~llksI~~----~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~ 302 (944)
T PRK14949 227 FGGGQVMLTQVQTMLGSIDEQHVIALLKALTD----ADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAA 302 (944)
T ss_pred hcCCcccHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchh
Confidence 432 222111 11111223446677777665 345666677778888999999999998888775 22111
Q ss_pred ----HHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 309 ----IKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 309 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
....+...+.+++..-.+.+++. ++...+.++....+++ +|+.||||++-
T Consensus 303 ~l~i~~e~i~~~a~~~s~~~L~~~ie~-l~~a~~~L~~n~n~rl~lE~~LLrl~~~ 357 (944)
T PRK14949 303 QQSLYSEQIRAFAEQLSPEQVQLYYQI-LLTGRKDLPHAPDPKSGLEMALLRAVAF 357 (944)
T ss_pred hccchHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHhhCCChHHHHHHHHHHHHHc
Confidence 12456667777776655555554 5555666777777776 99999999763
No 19
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.6e-43 Score=338.50 Aligned_cols=335 Identities=18% Similarity=0.238 Sum_probs=258.1
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+|++||||++|++++||+.+++.|..++..++.+| ++|+||+|+||||+|+.+|+.++|..... ..||+.
T Consensus 5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~---------~~pCg~ 75 (546)
T PRK14957 5 ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVT---------AEPCNK 75 (546)
T ss_pred hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcc
Confidence 59999999999999999999999999999999999 99999999999999999999998854321 345665
Q ss_pred ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+.+ +++..... .....++++++.+.. .+ ..++++|+||||+|+|+.++++.|+++||++
T Consensus 76 C~sC--~~i~~~~~~dlieidaas~--~gvd~ir~ii~~~~~-~p----~~g~~kViIIDEa~~ls~~a~naLLK~LEep 146 (546)
T PRK14957 76 CENC--VAINNNSFIDLIEIDAASR--TGVEETKEILDNIQY-MP----SQGRYKVYLIDEVHMLSKQSFNALLKTLEEP 146 (546)
T ss_pred cHHH--HHHhcCCCCceEEeecccc--cCHHHHHHHHHHHHh-hh----hcCCcEEEEEechhhccHHHHHHHHHHHhcC
Confidence 5554 33333333 33433211 112245666655543 22 2567899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.||++|++..+++++++|||..++|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.|+++|++++.
T Consensus 147 p~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~ 226 (546)
T PRK14957 147 PEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAIS 226 (546)
T ss_pred CCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----------
Q 017844 238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----------- 303 (365)
Q Consensus 238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----------- 303 (365)
+.. .++.+. .+.....++.++++++++.+++ ...+...+.++...+.+...++..+.+.+.+
T Consensus 227 ~~~~~It~~~V~~~l~~~~~~~v~~ll~Al~~~d----~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~ 302 (546)
T PRK14957 227 FCGGELKQAQIKQMLGIIDSEEVYSIINAIIDND----PKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLD 302 (546)
T ss_pred hccCCCCHHHHHHHHccCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 643 333221 1112234567899999988743 4445555667777889999998888754433
Q ss_pred hCCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 304 RLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
.+..+....+..++.+++....+.+++. ++.-..-++....++. +||+||||++-
T Consensus 303 ~~~~~~~~~i~~~a~~~s~~~l~~~~~~-~~~~~~~l~~~~~~~~~~em~l~r~~~~ 358 (546)
T PRK14957 303 AVNDIDVDIINNILAKISIEQAHFLYQL-TITAKKDIALAPNFETGVTMAILRLIAF 358 (546)
T ss_pred ccchhhHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 1223455778888888888877777775 4444444555555555 99999999864
No 20
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4e-43 Score=342.48 Aligned_cols=334 Identities=16% Similarity=0.240 Sum_probs=263.9
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
|++||||++|++++||+++++.|+.++..++.+| +||+||+|+||||+++++++.++|..... ..||+.|
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~---------~~~c~~c 76 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT---------AEPCNVC 76 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC---------CCCCCcc
Confidence 7899999999999999999999999999999999 89999999999999999999998864321 3466665
Q ss_pred eeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844 82 IDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (365)
Q Consensus 82 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~ 158 (365)
..| ..+..+ +++++...+. .....+++++..+. ..+ ..++++|+||||+|+|+.+++|+|+++||+++
T Consensus 77 ~~c--~~i~~g~~~d~~eid~~s~--~~v~~ir~l~~~~~-~~p----~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp 147 (576)
T PRK14965 77 PPC--VEITEGRSVDVFEIDGASN--TGVDDIRELRENVK-YLP----SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP 147 (576)
T ss_pred HHH--HHHhcCCCCCeeeeeccCc--cCHHHHHHHHHHHH-hcc----ccCCceEEEEEChhhCCHHHHHHHHHHHHcCC
Confidence 444 333333 3344433221 12224666655543 333 25688999999999999999999999999999
Q ss_pred CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844 159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~ 238 (365)
.++.||++|+++.+++++|+|||+.+.|.+++.+++..++..++.++|+.++++++..+++.++||+|.++++|+++..+
T Consensus 148 ~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay 227 (576)
T PRK14965 148 PHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAF 227 (576)
T ss_pred CCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh-----------
Q 017844 239 QY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR----------- 304 (365)
Q Consensus 239 ~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~----------- 304 (365)
.+ .++.++ .+.+...+..++++++++..+ +...+...+.+++..|.++..++..+..++.+-
T Consensus 228 ~g~~It~edV~~llG~~~~~~l~~ll~al~~~----d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~ 303 (576)
T PRK14965 228 CGDAVGDDDVAELLGVVDRRLLLDISAAVFGR----DTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGD 303 (576)
T ss_pred ccCCCCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 54 333332 222333455688999998874 456666777888889999999999888877651
Q ss_pred ---CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 305 ---LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 305 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
+.+.....+.+.+..|+....+.+++. +++....++.+..+++ +|+.|+||+..
T Consensus 304 ~l~~~~~~~~~~~~~A~~~s~~~L~~~l~~-l~~~~~~lk~~~~~~l~lE~lllkl~~~ 361 (576)
T PRK14965 304 LLDLSEAELAELRAQAAAADAADLQRHLTL-LLRAEGEMAHASFPRLVLEMALLKMATL 361 (576)
T ss_pred hccCCHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHhcCCCcHHHHHHHHHHHhhc
Confidence 223344667788888887755555554 6666656666667777 99999999874
No 21
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=2.9e-42 Score=284.90 Aligned_cols=288 Identities=26% Similarity=0.392 Sum_probs=241.0
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
+|++||||.-+.|++|+++.+..++...+.|..||++|.||||+||||.+.++|+++.++...
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~k----------------- 78 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYK----------------- 78 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhh-----------------
Confidence 699999999999999999999999999999999999999999999999999999999765421
Q ss_pred eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCce
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~ 161 (365)
...+++++++.+..+ .++..++.+++..-. . ..++.+|+|+||+|.|+..+|.+|.++||-++..+
T Consensus 79 ----------e~vLELNASdeRGID--vVRn~IK~FAQ~kv~-l-p~grhKIiILDEADSMT~gAQQAlRRtMEiyS~tt 144 (333)
T KOG0991|consen 79 ----------EAVLELNASDERGID--VVRNKIKMFAQKKVT-L-PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTT 144 (333)
T ss_pred ----------hHhhhccCccccccH--HHHHHHHHHHHhhcc-C-CCCceeEEEeeccchhhhHHHHHHHHHHHHHcccc
Confidence 112667777665544 688888988876532 1 23567999999999999999999999999999999
Q ss_pred eEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 017844 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241 (365)
Q Consensus 162 ~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~ 241 (365)
+|.++||...++.+++.|||..++|..+++.++.+.|..+++.|++.++++.++.|+..++||+|+|+|.||.....-+.
T Consensus 145 RFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~ 224 (333)
T KOG0991|consen 145 RFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGL 224 (333)
T ss_pred hhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766555
Q ss_pred CCCCCC--CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Q 017844 242 FKDNQA--IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAA 318 (365)
Q Consensus 242 ~~~~~~--~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~~~ 318 (365)
++.+.. +........+.+++..... .++.++.+.+.++...|.+|..|+..+++-..+ .+.+..+.++.+..+
T Consensus 225 Vn~enVfKv~d~PhP~~v~~ml~~~~~----~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~~~E~~rlE~ikeig 300 (333)
T KOG0991|consen 225 VNQENVFKVCDEPHPLLVKKMLQACLK----RNIDEALKILAELWKLGYSPEDIITTLFRVVKNMDVAESLRLEFIKEIG 300 (333)
T ss_pred cchhhhhhccCCCChHHHHHHHHHHHh----ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555542 2222233444555555444 678889999999999999999999999887765 234556777777777
Q ss_pred Hhhhhh
Q 017844 319 YYVSIS 324 (365)
Q Consensus 319 ~~~~~~ 324 (365)
.-+.|.
T Consensus 301 ~thmrI 306 (333)
T KOG0991|consen 301 LTHMRI 306 (333)
T ss_pred hHHhHH
Confidence 666553
No 22
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.6e-42 Score=335.01 Aligned_cols=339 Identities=19% Similarity=0.259 Sum_probs=263.4
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+.+++.|++++..++.+| ++|+||+|+||||+|+.+|+.++|....... + .. ..||+.
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~--~-~~-~~~cg~ 88 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDG--G-PT-IDLCGV 88 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccC--C-Cc-cccCcc
Confidence 58999999999999999999999999999999998 9999999999999999999999986532100 0 00 356676
Q ss_pred ceeccccccccccce---ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANHV---ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+.|. ++.+.+. .....++++++.+ ...++ .++++|+||||+|+|+..+++.|+++||++
T Consensus 89 c~~C--~~i~~g~h~Dv~e~~a~s~--~gvd~IReIie~~-~~~P~----~a~~KVvIIDEad~Ls~~a~naLLKtLEeP 159 (598)
T PRK09111 89 GEHC--QAIMEGRHVDVLEMDAASH--TGVDDIREIIESV-RYRPV----SARYKVYIIDEVHMLSTAAFNALLKTLEEP 159 (598)
T ss_pred cHHH--HHHhcCCCCceEEeccccc--CCHHHHHHHHHHH-Hhchh----cCCcEEEEEEChHhCCHHHHHHHHHHHHhC
Confidence 6666 555555544 4443321 2233577776654 33443 567899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.|||+|++..+++++++|||+.+.|.+++.+++..+|.+++.++|+.+++++++.|++.++||+|.+++.|++++.
T Consensus 160 p~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~ 239 (598)
T PRK09111 160 PPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIA 239 (598)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----------
Q 017844 238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----------- 303 (365)
Q Consensus 238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----------- 303 (365)
++. .++.+. .+.....+..++++++++..+ +..++...+.+++..|.+|..++.++.+++..
T Consensus 240 ~g~g~It~e~V~~llg~~~~~~if~L~~ai~~g----d~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a 315 (598)
T PRK09111 240 HGAGEVTAEAVRDMLGLADRARVIDLFEALMRG----DVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAA 315 (598)
T ss_pred hcCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchh
Confidence 642 333333 233344567889999998874 45666667778888999999999999977653
Q ss_pred ---hCCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844 304 ---RLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS 358 (365)
Q Consensus 304 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 358 (365)
.+.+.....+...+.+|+.....-+++. +++.....|+...+++ +|+.|||++.
T Consensus 316 ~~~~~~p~~~~kl~~~A~~~s~~~L~r~~q~-Ll~~~~~vK~~~n~~lalE~lLlrl~~ 373 (598)
T PRK09111 316 EDPSLSEAERTRGAEFAKKLSMRVLSRLWQM-LLKGIEEVQGAPRPLAAAEMVLIRLAY 373 (598)
T ss_pred hcccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence 1223345567777777875533333332 3444434445677777 9999999874
No 23
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4.9e-42 Score=342.92 Aligned_cols=336 Identities=16% Similarity=0.177 Sum_probs=257.9
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
|.|.+||||++|++++||+.+++.|+.++..++++| |||+||+|+||||+++.|++.|+|..... ..||+
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~---------~~pCg 73 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPT---------STPCG 73 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCC---------CCCCc
Confidence 458899999999999999999999999999999999 99999999999999999999999864211 34666
Q ss_pred cceecccccccc-----ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844 80 RNIDLELTTLSS-----ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154 (365)
Q Consensus 80 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~l 154 (365)
.|..| ..+.. .+++++...+. .....++++.+.+. ..+ ..++++|+||||+|+|+..++|.|+++|
T Consensus 74 ~C~sC--~~~~~g~~~~~dv~eidaas~--~~Vd~iR~l~~~~~-~~p----~~~~~KV~IIDEad~lt~~a~NaLLK~L 144 (824)
T PRK07764 74 ECDSC--VALAPGGPGSLDVTEIDAASH--GGVDDARELRERAF-FAP----AESRYKIFIIDEAHMVTPQGFNALLKIV 144 (824)
T ss_pred ccHHH--HHHHcCCCCCCcEEEeccccc--CCHHHHHHHHHHHH-hch----hcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 66555 33322 23344433221 12234566544432 233 2567899999999999999999999999
Q ss_pred hhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (365)
Q Consensus 155 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~ 234 (365)
|+++.+++|||+|++.++++++|+|||+.+.|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.++++|++
T Consensus 145 EEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 145 EEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred hCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC--CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----h-
Q 017844 235 CRVQQY--PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-----R- 304 (365)
Q Consensus 235 ~~~~~~--~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-----~- 304 (365)
++.+.. .++.+. .+........++++++++..++ ...+...+..++..|.++..++..+.++|.+ .
T Consensus 225 Lia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~~~D----~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~ 300 (824)
T PRK07764 225 LLAGAGPEGVTYERAVALLGVTDSALIDEAVDALAAGD----GAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAV 300 (824)
T ss_pred HHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 886632 333332 2334445677888999888643 4456666778888899999888888777654 1
Q ss_pred ----------CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 305 ----------LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 305 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
+..+....+...+..|+..-..-+++. +++....++....+++ +|+.++|++-.
T Consensus 301 ~~~~~~~l~~~p~d~~~~L~~qA~~~s~~~L~r~ie~-l~ea~~~lrgn~nprL~LElLllrLll~ 365 (824)
T PRK07764 301 PDAAERGLVDAPADQLDRMRAQAQRLGPAELTRAADV-VNDGLTEMRGATSPRLLLELLCARMLLP 365 (824)
T ss_pred CcchhhhhccCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHhhCCCcHHHHHHHHHHHHhh
Confidence 113445566677777765533333332 5555556666667776 89888888753
No 24
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.3e-41 Score=330.47 Aligned_cols=333 Identities=19% Similarity=0.276 Sum_probs=262.5
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
|.+||||++|++++||+++++.|++++..++.+| +||+||+|+|||++|+.+++.++|..... ..||+.|
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC~~C 76 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPCNEC 76 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCcc
Confidence 7799999999999999999999999999999999 99999999999999999999999876422 4566766
Q ss_pred eeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844 82 IDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (365)
Q Consensus 82 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~ 158 (365)
..| ..+..+ +.+++.+.+. .....+++++..+. ..+ ..++++|+||||+|+|+.+++++|++++|+++
T Consensus 77 ~~C--~~i~~g~~~dv~eidaas~--~~vd~ir~i~~~v~-~~p----~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp 147 (559)
T PRK05563 77 EIC--KAITNGSLMDVIEIDAASN--NGVDEIRDIRDKVK-YAP----SEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP 147 (559)
T ss_pred HHH--HHHhcCCCCCeEEeecccc--CCHHHHHHHHHHHh-hCc----ccCCeEEEEEECcccCCHHHHHHHHHHhcCCC
Confidence 555 444333 3444444321 12224666665543 333 35788999999999999999999999999999
Q ss_pred CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844 159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~ 238 (365)
.++.||++|+.+.+++++|+|||+.+.|.+++.+++..++..++.++|+.++++++..+++.++|++|.|++.|+++..+
T Consensus 148 ~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~ 227 (559)
T PRK05563 148 AHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISF 227 (559)
T ss_pred CCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----C------
Q 017844 239 QY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR----L------ 305 (365)
Q Consensus 239 ~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~----~------ 305 (365)
+. .++.++ .+.+......++++++++..+ +..++...+.+++..|.++..++.++..++.+- .
T Consensus 228 ~~~~It~~~V~~vlg~~~~~~i~~l~~al~~~----d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~ 303 (559)
T PRK05563 228 GDGKVTYEDALEVTGSVSQEALDDLVDAIVEG----DVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEI 303 (559)
T ss_pred ccCCCCHHHHHHHhCCCCHHHHHHHHHHHHcc----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 42 333322 233444567788999998875 345666777888889999999999888877652 1
Q ss_pred ---CHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844 306 ---DAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS 358 (365)
Q Consensus 306 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 358 (365)
+......+.+.+..|+......++.. +.+....+|.+.++++ +|+.|++++.
T Consensus 304 ~~~~~~~~~~~~~~a~~~s~~~L~~~i~~-L~~~~~~lk~~~~~~l~lE~lllkl~~ 359 (559)
T PRK05563 304 LDESTENDELFKELSEKLDIERLYRMIDI-LNDAQQQIKWTNQPRIYLEVALVKLCE 359 (559)
T ss_pred cccCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence 12334556666667765533333332 6666667777788887 9999999987
No 25
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.8e-41 Score=324.61 Aligned_cols=337 Identities=17% Similarity=0.247 Sum_probs=255.8
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+|++||||++|++++||+.+++.|+.++..++.+| +||+||+|+||||+|+.+|+.++|..... ..||+.
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg~ 75 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCNT 75 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCcc
Confidence 69999999999999999999999999999999877 99999999999999999999998854211 346666
Q ss_pred ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+.+ +++.+... .....++++.+.+.. .+. .++++|+||||+|.|+.++++.|+++||++
T Consensus 76 C~sC--~~i~~g~hpDv~eId~a~~--~~Id~iR~L~~~~~~-~p~----~g~~kVIIIDEad~Lt~~a~naLLk~LEEP 146 (624)
T PRK14959 76 CEQC--RKVTQGMHVDVVEIDGASN--RGIDDAKRLKEAIGY-APM----EGRYKVFIIDEAHMLTREAFNALLKTLEEP 146 (624)
T ss_pred cHHH--HHHhcCCCCceEEEecccc--cCHHHHHHHHHHHHh-hhh----cCCceEEEEEChHhCCHHHHHHHHHHhhcc
Confidence 6555 33333333 34433211 112245554444332 232 467799999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.||++|++..++.++|+|||+.++|++++.+++.++|+.++.++|+.+++++++.|++.++||+|+|+++|++++.
T Consensus 147 ~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 147 PARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred CCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----------
Q 017844 238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR---------- 304 (365)
Q Consensus 238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~---------- 304 (365)
.+. .++.+. .+........++++++++..+ +...+...+..++..+.++..++..+..++.+-
T Consensus 227 ~g~~~It~d~V~~~lg~~~~e~vfeLl~AL~~~----D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~ 302 (624)
T PRK14959 227 LGESRLTIDGARGVLGLAGQELFLRLMEALAAQ----DCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAA 302 (624)
T ss_pred hcCCCcCHHHHHHHhCCCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccc
Confidence 332 233222 122223345688888888653 445566667777788999998888777766541
Q ss_pred -----CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCCc
Q 017844 305 -----LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDPV 361 (365)
Q Consensus 305 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 361 (365)
+..+....+..++.+|+......+++. +++....+++..++++ +|+.||+++..+.
T Consensus 303 ~~~l~i~~~~~~~~~~~A~~~s~~~L~~~l~~-il~~~~~l~~n~n~rl~lE~lLL~l~~~~~ 364 (624)
T PRK14959 303 LASLDLPEDEARQWLGWAKRFEPAHIHACWQM-TLEGQRRVLTSLEPAMALELLLLNLAMLPR 364 (624)
T ss_pred hhhcccCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence 223344556677777775534443433 5555566778888888 9999999986553
No 26
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.6e-41 Score=319.41 Aligned_cols=278 Identities=21% Similarity=0.306 Sum_probs=222.8
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+.+++.|+.+++.++.+| ++|+||+|+||||+|+++++.+.|..... ..||+.
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~---------~~pC~~ 73 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPS---------STPCDT 73 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCC---------CCCCcc
Confidence 59999999999999999999999999999999999 89999999999999999999998865321 345666
Q ss_pred ceecccccccccccee---cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANHVE---LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| .....+.+.. +.+.+. .....+++.+..... .+ ..++++|+||||+|+|+.+++++|+++||++
T Consensus 74 C~~C--~~~~~~~h~dv~eldaas~--~gId~IRelie~~~~-~P----~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp 144 (535)
T PRK08451 74 CIQC--QSALENRHIDIIEMDAASN--RGIDDIRELIEQTKY-KP----SMARFKIFIIDEVHMLTKEAFNALLKTLEEP 144 (535)
T ss_pred cHHH--HHHhhcCCCeEEEeccccc--cCHHHHHHHHHHHhh-Cc----ccCCeEEEEEECcccCCHHHHHHHHHHHhhc
Confidence 5555 4333444433 333221 122346666654332 22 2467899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.+++||++|+++.+++++++|||..++|.+++.+++.+++..++.++|+.++++++..|++.++||+|++++.|++++.
T Consensus 145 p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~ 224 (535)
T PRK08451 145 PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAII 224 (535)
T ss_pred CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 017844 238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK 303 (365)
Q Consensus 238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~ 303 (365)
++. .++.+. .+.+......++++++++..++ ...+.+.+.++ .|.++..++..+..++..
T Consensus 225 ~~~~~It~~~V~~~lg~~~~~~I~~li~ai~~~d----~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~ 287 (535)
T PRK08451 225 YCKNAITESKVADMLGLLDPSKLEDFFQAILNQD----KEKLFELLKEL--EDYEAEMVLDEMMLFLKE 287 (535)
T ss_pred hcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHhcC----HHHHHHHHHHH--HCCCHHHHHHHHHHHHHH
Confidence 653 344433 2233344678899999888743 34555555555 468999999998888864
No 27
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.9e-41 Score=326.99 Aligned_cols=336 Identities=18% Similarity=0.232 Sum_probs=262.8
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||.+|++++||+++++.|..+++.++.+| +||+||+|+||||+|+.+++.++|..... . ..+|+.
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~---~-----~~~Cg~ 77 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTA---D-----GEACNE 77 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCC---C-----CCCCCc
Confidence 59999999999999999999999999999999999 99999999999999999999998865321 0 345666
Q ss_pred ceeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+... .+..+.+.+. .....+++.++.+.. .++ .++++|+||||+|.|+.+++++|+++||++
T Consensus 78 C~sC--~~~~~~~~~n~~~ld~~~~--~~vd~Ir~li~~~~~-~P~----~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 78 CESC--VAFNEQRSYNIHELDAASN--NSVDDIRNLIEQVRI-PPQ----IGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred chHH--HHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhh-Ccc----cCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 6555 333333 3334433321 222346666655433 332 567899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.||++|+...++.++|+|||..++|.+++.+++..++.+++.++|+.+++++++.|+..++||+|+|++.|+.++.
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~ 228 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVS 228 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----------
Q 017844 238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR---------- 304 (365)
Q Consensus 238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~---------- 304 (365)
+.+ .++.+. ........+.+|++++++..+ +..++...+.+++..|.+|..|+..+..++..-
T Consensus 229 y~~~~It~~~V~~~l~~~~~~~iF~L~dai~~~----~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ 304 (614)
T PRK14971 229 FTGGNITYKSVIENLNILDYDYYFRLTDALLAG----KVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQ 304 (614)
T ss_pred hccCCccHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 543 344322 111223346779999999874 456677778899999999999999988877651
Q ss_pred ---CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 305 ---LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 305 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
+.......+.+.+.+|+.....-.+. .+.+....+|++..++. +|+.|++++..
T Consensus 305 ll~v~~~~~~~~~~qa~~~s~~~L~~~l~-~l~e~d~~lK~~~n~~l~lE~lllkL~~~ 362 (614)
T PRK14971 305 LLEVGESIRQRYLEQAQKCPMSFLYRALK-LCNQCDLNYRASKNKRLLVELTLIQLAQL 362 (614)
T ss_pred cccCCHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 23445566777777887663333333 25555556666777777 99999998775
No 28
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.8e-40 Score=315.26 Aligned_cols=279 Identities=20% Similarity=0.243 Sum_probs=228.9
Q ss_pred ccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (365)
Q Consensus 4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~ 82 (365)
.+||||++|++++||+++++.|+.++..++.+| ++|+||+|+||||+|+++++.+.|.... ..+|+.|.
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~----------~~~cg~C~ 74 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGED----------PKPCGECE 74 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCC----------CCCCCcCh
Confidence 399999999999999999999999999999999 7999999999999999999999875432 12333333
Q ss_pred ecc-ccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCce
Q 017844 83 DLE-LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (365)
Q Consensus 83 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~ 161 (365)
.|. .....+.++.++.+.+. .....++++...+.. .++ .++++|+||||+|.++..+++.|++.+++++.++
T Consensus 75 sc~~i~~~~h~dv~el~~~~~--~~vd~iR~l~~~~~~-~p~----~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t 147 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASN--NSVEDVRDLREKVLL-APL----RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHV 147 (504)
T ss_pred hhHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhh-ccc----cCCCeEEEEECccccCHHHHHHHHHHHHhCCCCE
Confidence 330 02233444555555422 222346665444433 232 4678999999999999999999999999999899
Q ss_pred eEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 017844 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241 (365)
Q Consensus 162 ~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~ 241 (365)
.||++++++.++.++++|||..++|.+++.+++..++.+++.++|+.++++++..|++.++||+|++++.|++++.++..
T Consensus 148 ~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~ 227 (504)
T PRK14963 148 IFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTP 227 (504)
T ss_pred EEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877555
Q ss_pred CCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 017844 242 FKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK 303 (365)
Q Consensus 242 ~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~ 303 (365)
++.+. .+....+++.++++++++..+ +..++...+.+++..|.+|..|+..+.+++..
T Consensus 228 It~~~V~~~l~~~~~~~if~Li~al~~~----d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ 287 (504)
T PRK14963 228 VTRKQVEEALGLPPQERLRGIAAALAQG----DAAEALSGAAQLYRDGFAARTLVEGLLEAFRA 287 (504)
T ss_pred CCHHHHHHHHCCCcHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 66544 344556788999999999874 45677777888999999999999999998874
No 29
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.2e-41 Score=323.02 Aligned_cols=338 Identities=17% Similarity=0.196 Sum_probs=257.5
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+.+++.|+.+++.++.+| ++|+||+|+||||+|+++++.+.|..... ..||+.
T Consensus 5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---------~~pC~~ 75 (563)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---------PMPCGE 75 (563)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---------CCCCcc
Confidence 37899999999999999999999999999999999 99999999999999999999998864221 346666
Q ss_pred ceeccccccccccceecCCCCcCc-cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844 81 NIDLELTTLSSANHVELSPSDAGF-QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~ 159 (365)
|..| ..+....++++..-+... .....++++.+.+. ..+. .++++|+||||+|.|+.+++++|++++|+++.
T Consensus 76 C~~C--~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~-~~p~----~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~ 148 (563)
T PRK06647 76 CSSC--KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIM-FPPA----SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPP 148 (563)
T ss_pred chHH--HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHH-hchh----cCCCEEEEEEChhhcCHHHHHHHHHhhccCCC
Confidence 6555 433333333322111111 11223555444433 3332 56789999999999999999999999999999
Q ss_pred ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
++.||++|+++.++.++|+|||+.++|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.|+++|++++.+.
T Consensus 149 ~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~ 228 (563)
T PRK06647 149 YIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFS 228 (563)
T ss_pred CEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred C-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----C--CH---
Q 017844 240 Y-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR----L--DA--- 307 (365)
Q Consensus 240 ~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~----~--~~--- 307 (365)
. .++.+. .+.....+..++++++++..+ +..++...+..++..|.++..++..+.+++.+- . .+
T Consensus 229 ~~~It~e~V~~llg~~~~~~if~LidaI~~~----D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~ 304 (563)
T PRK06647 229 DSDITLEQIRSKMGLTGDEFLEKLASSILNE----DAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAF 304 (563)
T ss_pred CCCCCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhh
Confidence 3 333222 122333456788899988874 556777778888889999999999888877651 1 11
Q ss_pred --HHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844 308 --EIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP 360 (365)
Q Consensus 308 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 360 (365)
.....+.+.+..|+......++.. +.+....+|...++++ +|+.|++++...
T Consensus 305 l~~~~e~l~k~~~~~s~~~L~~~l~~-Llea~~~lK~n~~~~l~lE~llikl~~~~ 359 (563)
T PRK06647 305 IGIKAERLPEKLREFDLSQIERAISV-LLETYRDLQFSVNPRYELEINFSKILRLK 359 (563)
T ss_pred ccccHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 112334555556765533333332 5556666777888888 999999998643
No 30
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-40 Score=318.29 Aligned_cols=334 Identities=19% Similarity=0.203 Sum_probs=250.9
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+|++||||++|++++||+.+++.|+.++..++.+| ++|+||+|+||||+|+.+|+.++|..... ..||+.
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~---------~~pc~~ 75 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE---------GEPCGK 75 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC---------CCCCCc
Confidence 79999999999999999999999999999999999 89999999999999999999998753221 246666
Q ss_pred ceecccccccc---ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSS---ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+.. .+.+++.+.+. .....++++.+. ....|. .++++|+||||+|.|+.+++++|+++++++
T Consensus 76 c~nc--~~i~~g~~~d~~eidaas~--~gvd~ir~I~~~-~~~~P~----~~~~KVvIIDEad~Lt~~a~naLLk~LEep 146 (486)
T PRK14953 76 CENC--VEIDKGSFPDLIEIDAASN--RGIDDIRALRDA-VSYTPI----KGKYKVYIIDEAHMLTKEAFNALLKTLEEP 146 (486)
T ss_pred cHHH--HHHhcCCCCcEEEEeCccC--CCHHHHHHHHHH-HHhCcc----cCCeeEEEEEChhhcCHHHHHHHHHHHhcC
Confidence 5544 33333 33344433221 112235554443 334443 567899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.||++|++..+++++++|||+.+.|.+++.+++..++..++.++|+.+++++++.+++.++||+|.|++.|++++.
T Consensus 147 p~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~ 226 (486)
T PRK14953 147 PPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQAST 226 (486)
T ss_pred CCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----CC--HH
Q 017844 238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR----LD--AE 308 (365)
Q Consensus 238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~----~~--~~ 308 (365)
++. .++.+. .+.....+..++++++++..+ +...+...+.+++..|.++..++..+..++.+- .. ..
T Consensus 227 ~~~~~It~~~V~~~lg~~~~~~vf~Li~ai~~~----d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~ 302 (486)
T PRK14953 227 YGEGKVTIKVVEEFLGIVSQESVRKFLNLLLES----DVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPE 302 (486)
T ss_pred hcCCCcCHHHHHHHhCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChh
Confidence 643 233222 223344566789999999874 456677777888889999999999998877651 11 11
Q ss_pred H-H--HHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844 309 I-K--HEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP 360 (365)
Q Consensus 309 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 360 (365)
. . .+.... ..++..-...+.+ .+.+....++. .+|+. +|+.|||++..+
T Consensus 303 ~~~~~~~~~~~-~~~~~~~l~~~~~-~~~~~~~~l~~-~~~~~~~E~~ll~l~~~~ 355 (486)
T PRK14953 303 EVFQVEDFYRK-LEKPLEALLYLED-VINKAFSEART-RDPLRAYELAILKLLYVK 355 (486)
T ss_pred hhcchHHHHHH-hcCCHHHHHHHHH-HHHHHHHHHhc-cChhHHHHHHHHHHHhhC
Confidence 0 0 011111 2232221222222 24445566777 77777 999999998543
No 31
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.6e-41 Score=326.29 Aligned_cols=333 Identities=20% Similarity=0.275 Sum_probs=249.6
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+.+++.|+.++..++.+| +||+||+|+|||++|+.+|+.+.|...... ..||+.
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~--------~~pC~~ 78 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL--------LEPCQE 78 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC--------CCchhH
Confidence 69999999999999999999999999999999999 899999999999999999999988653210 345555
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
|..+ . ..+.+.+++.+. +......++++++.+.. .| ..++++|+||||+|.|+.+++++|+++||+|+.+
T Consensus 79 C~~~--~-~~~~Dvieidaa--sn~~vd~IReLie~~~~-~P----~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~ 148 (725)
T PRK07133 79 CIEN--V-NNSLDIIEMDAA--SNNGVDEIRELIENVKN-LP----TQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKH 148 (725)
T ss_pred HHHh--h-cCCCcEEEEecc--ccCCHHHHHHHHHHHHh-ch----hcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCc
Confidence 5433 1 122233333321 11222346777666543 33 2578899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~ 240 (365)
+.||++|+++.+++++|+|||+.++|.+++.+++.++|..++.++|+.++++++..+++.++|++|.|++++++++.++.
T Consensus 149 tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~ 228 (725)
T PRK07133 149 VIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGN 228 (725)
T ss_pred eEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876542
Q ss_pred -CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC----CH-H----
Q 017844 241 -PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL----DA-E---- 308 (365)
Q Consensus 241 -~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~----~~-~---- 308 (365)
.++.+. .+.+......++++++++..+ +...+...+.+++..|.+|..++..+...+.+-+ .+ .
T Consensus 229 ~~It~e~V~ellg~~~~e~If~Ll~aI~~k----d~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~ 304 (725)
T PRK07133 229 NKITLKNVEELFGLVSNENLINLLNLLYSK----DIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLE 304 (725)
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhc
Confidence 222221 122233445688888888774 4566667778888899999999888877765511 11 1
Q ss_pred --HHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 309 --IKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 309 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
...++... +++......+++ .+.+....++....+++ +|+.+|+++..
T Consensus 305 ~~d~~~l~~~--~~s~~~l~~~le-~i~~~~~~L~~n~n~~l~lE~lll~L~~~ 355 (725)
T PRK07133 305 YYSEEDLEKL--KIDDDFAYKFIE-ILFDLLKDLKISDNPNDTLEILIIKLLAL 355 (725)
T ss_pred cCCHHHHHHh--cCCHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 11222221 233221222222 35555667777788877 99999998754
No 32
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.4e-41 Score=319.71 Aligned_cols=282 Identities=20% Similarity=0.278 Sum_probs=227.1
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+.+++.|..++..++.+| ++|+||+|+||||+|+.+|+.+.|..+.. ..||+.
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~---------~~~Cg~ 75 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKD---------GDCCNS 75 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCcc
Confidence 59999999999999999999999999999999998 99999999999999999999998866432 345666
Q ss_pred ceecc-ccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844 81 NIDLE-LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~ 159 (365)
|..|. .....+++.+++.+.+. .....+++++..+.. .+. .++++|+||||+|.|+.+++++|+++||+++.
T Consensus 76 C~sCr~i~~~~h~DiieIdaas~--igVd~IReIi~~~~~-~P~----~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~ 148 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAASN--NGVDEIRNIIDNINY-LPT----TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPK 148 (605)
T ss_pred cHHHHHHHcCCCCceEEeccccc--cCHHHHHHHHHHHHh-chh----hCCcEEEEEechHhCCHHHHHHHHHHHHhCCC
Confidence 54440 02223344445543321 122346666655543 232 45679999999999999999999999999999
Q ss_pred ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
++.||++|+.+.+++++++|||+.++|.+++.+++..+|..++.++|+.++++++..+++.++||+|.|++.|+.++.+.
T Consensus 149 ~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~ 228 (605)
T PRK05896 149 HVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFK 228 (605)
T ss_pred cEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CC-CCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 017844 240 YP-FKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK 303 (365)
Q Consensus 240 ~~-~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~ 303 (365)
+. ++.+. .+.+......++++++++..+ +...+...+.+++..|.+|..+++.+...+.+
T Consensus 229 ~~~It~e~V~ellg~~~~~~Vf~Ll~AI~~k----d~~~al~~l~~Ll~~ge~~~~il~~L~~~~RD 291 (605)
T PRK05896 229 NSEIDIEDINKTFGLVDNNKKINLIELIQKN----DIEELRNLINELESKGINFEAFCRDLINLLID 291 (605)
T ss_pred CCCCCHHHHHHHhccCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 42 33221 111222335678888888763 45667777888889999999999999888766
No 33
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.1e-40 Score=321.99 Aligned_cols=344 Identities=17% Similarity=0.208 Sum_probs=263.6
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
.++||||++|++++||+.+++.|+.++..++.+| ++|+||+|+||||+|+.+|+.++|.....-....... ..||+.|
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~-~~~Cg~C 84 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV-TEPCGEC 84 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc-CCCCccC
Confidence 4789999999999999999999999999999999 9999999999999999999999986421100000011 3577777
Q ss_pred eeccccccccccceecCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 82 IDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
..| ..+..+.++++..-+. .......++++.+.+.. .++ .++++|+||||+|.|+.++++.|+++||+++.+
T Consensus 85 ~sC--~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~-~P~----~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~ 157 (620)
T PRK14954 85 ESC--RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRY-GPQ----KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPH 157 (620)
T ss_pred HHH--HHHhccCCCCeEEecccccCCHHHHHHHHHHHHh-hhh----cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCC
Confidence 666 4444444444322121 11112345665555443 232 567899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~- 239 (365)
+.||+++++..++.++|+|||+.++|.+++.+++..++.+++.++|+.+++++++.+++.++||+|.+++.+++++.+.
T Consensus 158 tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~ 237 (620)
T PRK14954 158 AIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSV 237 (620)
T ss_pred eEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred -----CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh-----C--
Q 017844 240 -----YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR-----L-- 305 (365)
Q Consensus 240 -----~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~-----~-- 305 (365)
..++.+. .+.....++.+|++++++..+ +..++...+.+++..|.+|..++..+.+++..- +
T Consensus 238 ~~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~----d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~ 313 (620)
T PRK14954 238 GSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAEN----DAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRS 313 (620)
T ss_pred ccccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 1233221 222334567889999999874 456677778888899999999999888877651 1
Q ss_pred ------CHHHHHHHHHHHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844 306 ------DAEIKHEVCHWAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP 360 (365)
Q Consensus 306 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 360 (365)
.+.....+.+.+.+|+.. +.+++- .+.+....+|+...+++ +|+.|++++..+
T Consensus 314 ~~l~~~~~~v~~~l~~qA~~fs~~~L~~~l~--~l~e~d~~LKtn~n~~l~lEllLlkl~~~~ 374 (620)
T PRK14954 314 TRLIERPESVKERYQQSAGGLTPAAVMQMTD--FLMKTQGELKFQFEYQFRFELALLRLIELV 374 (620)
T ss_pred cccccCCHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence 123356677888888866 444333 25555556677777777 999999987654
No 34
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-39 Score=318.41 Aligned_cols=339 Identities=20% Similarity=0.239 Sum_probs=260.3
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+|.+||||++|++++||+.+++.|+.++..++.+| +||+||+|+||||+|+++|+.++|...... . ..||+.
T Consensus 5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~------~-~~~Cg~ 77 (620)
T PRK14948 5 PLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP------T-PEPCGK 77 (620)
T ss_pred hHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC------C-CCCCcc
Confidence 69999999999999999999999999999998876 999999999999999999999988642110 0 246666
Q ss_pred ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+.+ +++.+.. ......+++++.... ..++ .++++|+||||+|.|+.+++++|+++||++
T Consensus 78 C~~C--~~i~~g~h~D~~ei~~~~--~~~vd~IReii~~a~-~~p~----~~~~KViIIDEad~Lt~~a~naLLK~LEeP 148 (620)
T PRK14948 78 CELC--RAIAAGNALDVIEIDAAS--NTGVDNIRELIERAQ-FAPV----QARWKVYVIDECHMLSTAAFNALLKTLEEP 148 (620)
T ss_pred cHHH--HHHhcCCCccEEEEeccc--cCCHHHHHHHHHHHh-hChh----cCCceEEEEECccccCHHHHHHHHHHHhcC
Confidence 5444 44444433 3443321 122235677765543 3332 567899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.||++|+++.++.++|+|||+.++|.+++.+++..++..++.++|+.++++++..+++.++||+|+|+++|+.++.
T Consensus 149 p~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL 228 (620)
T PRK14948 149 PPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSL 228 (620)
T ss_pred CcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----C------
Q 017844 238 QQYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR----L------ 305 (365)
Q Consensus 238 ~~~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~----~------ 305 (365)
+.+.++.+. .+.....+..++++++++..+ +...+...+.+++..|.++..++.++..++.+- .
T Consensus 229 ~~~~It~e~V~~lvg~~~e~~i~~Ll~ai~~~----d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~ 304 (620)
T PRK14948 229 LPGPITPEAVWDLLGAVPEQDLLNLLKALASN----DPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPD 304 (620)
T ss_pred ccCCCCHHHHHHHhcCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 765554333 122233456678888888864 344555666777888999999999888877651 1
Q ss_pred ----CHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCCc
Q 017844 306 ----DAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDPV 361 (365)
Q Consensus 306 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 361 (365)
.......+...+..|+..-..-+.. .+.+....+|++.+++. +|..|+++...+.
T Consensus 305 l~~i~~d~~~~l~~~A~~~s~~~L~~~i~-~L~eae~~LK~n~nprL~LE~lLl~l~~~~~ 364 (620)
T PRK14948 305 LVAVSQQTWDELCKLAKQINLERILQWQQ-HLKGSEYQLKNSTQPRLWLEVTLLGLLPSAF 364 (620)
T ss_pred hhhcCHHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHHHHhcCCCccHHHHHHHHHhhccCc
Confidence 1122334556666665442222222 35666677888889998 9999999987654
No 35
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.7e-40 Score=307.16 Aligned_cols=343 Identities=16% Similarity=0.206 Sum_probs=258.7
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccc-eeccccceecCCC
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKV-KVENKTWKIDAGS 79 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i-~~~~~~~~~~~~~ 79 (365)
..++||||++|++++||+.+++.|+.++.+++.+| ++|+||+|+||||+|+++|+.++|.....- ... ... ..||+
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~-~~~-~~~c~ 82 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL-QEV-TEPCG 82 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc-ccC-CCCCC
Confidence 36799999999999999999999999999999999 999999999999999999999998642110 000 001 35777
Q ss_pred cceeccccccccccceecCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844 80 RNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~ 158 (365)
.|..| ..+..+.+.++..-+. .......+++....+.. .+. .++++|+||||+|.|+.++++.|++++|+++
T Consensus 83 ~c~~c--~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~-~p~----~~~~kvvIIdea~~l~~~~~~~LLk~LEep~ 155 (397)
T PRK14955 83 ECESC--RDFDAGTSLNISEFDAASNNSVDDIRLLRENVRY-GPQ----KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP 155 (397)
T ss_pred CCHHH--HHHhcCCCCCeEeecccccCCHHHHHHHHHHHhh-chh----cCCeEEEEEeChhhCCHHHHHHHHHHHhcCC
Confidence 77665 4444443333221111 11112345555544432 232 5678999999999999999999999999999
Q ss_pred CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844 159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~ 238 (365)
..+.||+++++..++.++++|||..++|.+++.+++.+++..++.++|+.+++++++.+++.++||+|.+++.++++..+
T Consensus 156 ~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 156 PHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAF 235 (397)
T ss_pred CCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CC------CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----h-
Q 017844 239 QY------PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-----R- 304 (365)
Q Consensus 239 ~~------~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-----~- 304 (365)
.. .++.+. .+.....+..+|++++++..+ +..++...+.+++..+.+|..++..+..++.. .
T Consensus 236 ~~~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~----~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~ 311 (397)
T PRK14955 236 SVESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADG----DAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNL 311 (397)
T ss_pred ccccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 42 233221 223344567889999999874 45666677788888999999999988887765 1
Q ss_pred ------CCHH-HHHHHHHHHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 305 ------LDAE-IKHEVCHWAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 305 ------~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
..+. ....+.+.+.+|+.. +.++ +. .+.+....+|+...+++ +|+.+++++.-
T Consensus 312 ~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~-l~-~l~e~d~~lK~~~~~~l~lE~lll~l~~~ 373 (397)
T PRK14955 312 RSTRLVERPDAVRERYERDAAKFSPEVIMQM-TD-LLLQTQKELKFQFEYQFRFELALLKLIEI 373 (397)
T ss_pred cccccccCCHHHHHHHHHHHHhCCHHHHHHH-HH-HHHHHHHHHhcCCCccHHHHHHHHHHHhh
Confidence 1111 234667778888766 4444 33 25555556666677777 88888887653
No 36
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.4e-39 Score=308.77 Aligned_cols=334 Identities=19% Similarity=0.277 Sum_probs=248.9
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++||||++|++++||+.+++.|+.+++.++.+| ++|+||+|+||||+|+.+++.+.|..... +..||+.
T Consensus 6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~--------~~~~c~~ 77 (451)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTE--------DQEPCNQ 77 (451)
T ss_pred HHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCccc--------CCCCCcc
Confidence 48999999999999999999999999999999998 99999999999999999999998864321 0345555
Q ss_pred ceecccccccccc---ceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSAN---HVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+. ++++...+. .....++++.+.+... + ..++++|+||||+|.|+.++++.|+++||++
T Consensus 78 c~~C--~~i~~~~~~d~~~i~g~~~--~gid~ir~i~~~l~~~-~----~~~~~kvvIIdead~lt~~~~n~LLk~lEep 148 (451)
T PRK06305 78 CASC--KEISSGTSLDVLEIDGASH--RGIEDIRQINETVLFT-P----SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP 148 (451)
T ss_pred cHHH--HHHhcCCCCceEEeecccc--CCHHHHHHHHHHHHhh-h----hcCCCEEEEEecHHhhCHHHHHHHHHHhhcC
Confidence 5444 3333332 333332211 1112344444333221 1 2457799999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.||++|++..++.++++|||..++|.+++.+++.+++..++.++|+.+++++++.|+..++||+|.|++.++.++.
T Consensus 149 ~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 149 PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVG 228 (451)
T ss_pred CCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 017844 238 QQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVC 314 (365)
Q Consensus 238 ~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~ 314 (365)
+. ..++.+. .+.....++.++++++++.. ++..++...+.+++..|.+|..++..+.+++..-+.-+....+.
T Consensus 229 ~~~~~It~~~V~~l~~~~~~~~vf~L~~ai~~----~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~ 304 (451)
T PRK06305 229 LFPKSLDPDSVAKALGLLSQDSLYTLDEAITT----QNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLS 304 (451)
T ss_pred hccCCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 52 2233222 22334456788999988876 34667777788888899999999988888776633222233456
Q ss_pred HHHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844 315 HWAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS 358 (365)
Q Consensus 315 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 358 (365)
+.+..|+.. +.+++-. +.+....+|+...+.. +|..+++++.
T Consensus 305 ~~a~~~s~~~L~~ii~~--l~e~d~~lk~~~~~k~~lE~lll~l~~ 348 (451)
T PRK06305 305 SVATKYSSEQLLEIIDF--LGESAKHIQLTIFEKTFLETVIIHLIR 348 (451)
T ss_pred HHHHhCCHHHHHHHHHH--HHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 666677655 3333332 3444444444444443 7777777653
No 37
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9e-39 Score=303.46 Aligned_cols=283 Identities=20% Similarity=0.318 Sum_probs=227.2
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|.+||||++|++++||+++.+.|+..+..++.+| ++|+||||+||||+|+++|+.+.|..... ..||+.
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~---------~~pc~~ 73 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG---------VEPCNE 73 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---------CCCCcc
Confidence 38899999999999999999999999999999998 89999999999999999999998754321 345555
Q ss_pred ceeccccccc---cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLS---SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| .... ....+++.+.... ....++++.... ...+. .++++|+||||+|.|+.++++.|++.++++
T Consensus 74 c~~c--~~i~~g~~~dv~el~aa~~~--gid~iR~i~~~~-~~~p~----~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p 144 (472)
T PRK14962 74 CRAC--RSIDEGTFMDVIELDAASNR--GIDEIRKIRDAV-GYRPM----EGKYKVYIIDEVHMLTKEAFNALLKTLEEP 144 (472)
T ss_pred cHHH--HHHhcCCCCccEEEeCcccC--CHHHHHHHHHHH-hhChh----cCCeEEEEEEChHHhHHHHHHHHHHHHHhC
Confidence 5443 2222 2234455443221 122355544333 33332 457799999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.+|++|+++.++.++++|||..+.|.+++.+++..++++++..+|+.+++++++.|++.++||+|.+++.|+.++.
T Consensus 145 ~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 145 PSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred CCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCC
Q 017844 238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLD 306 (365)
Q Consensus 238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~ 306 (365)
++. .++.+. .+.....++.++++++++.. ++...+...+.+++..|.+|..+++++.......+.
T Consensus 225 ~~~~~It~e~V~~~l~~~~~~~i~~li~si~~----~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 225 FSEGKITLETVHEALGLIPIEVVRDYINAIFN----GDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred hcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 543 344333 12233445778889988877 456778888899999999999999999999887543
No 38
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.3e-39 Score=314.63 Aligned_cols=336 Identities=20% Similarity=0.238 Sum_probs=261.0
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
|.+||||++|++++||+++++.|+.++..++.+| ++|+||+|+||||+++.+++.++|...... ..||+.|
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--------~~~c~~c 77 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--------GRPCGTC 77 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--------CCCCccC
Confidence 7799999999999999999999999999999998 899999999999999999999987543110 2455555
Q ss_pred eeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844 82 IDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (365)
Q Consensus 82 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~ 158 (365)
..| ..+..+.+ +++.+.. ......++++++.+. ..+ ..++++|+||||+|.|+.++++.|+++||+++
T Consensus 78 ~~c--~~i~~~~~~d~~~i~~~~--~~~vd~ir~ii~~~~-~~p----~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp 148 (585)
T PRK14950 78 EMC--RAIAEGSAVDVIEMDAAS--HTSVDDAREIIERVQ-FRP----ALARYKVYIIDEVHMLSTAAFNALLKTLEEPP 148 (585)
T ss_pred HHH--HHHhcCCCCeEEEEeccc--cCCHHHHHHHHHHHh-hCc----ccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC
Confidence 444 33333333 3444321 122234566554433 233 24678999999999999999999999999999
Q ss_pred CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844 159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~ 238 (365)
.++.||+++++..++.++++|||..+.|.+++.+++..++..++.++|+.++++++..+++.++||+|.+++.|++++.+
T Consensus 149 ~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y 228 (585)
T PRK14950 149 PHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATT 228 (585)
T ss_pred CCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred CC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH------------
Q 017844 239 QY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------ 303 (365)
Q Consensus 239 ~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~------------ 303 (365)
.. .++.+. .+.....+..++++++++..+ +..++...+..++..|.++..++..+.+++..
T Consensus 229 ~~~~It~e~V~~ll~~s~~~~vf~Lidal~~~----d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~ 304 (585)
T PRK14950 229 YGGEISLSQVQSLLGISGDEEVKALAEALLAK----DLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSL 304 (585)
T ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 33 333322 223334567889999999874 45667777888889999999999988887654
Q ss_pred -hCCHHHHHHHHHHHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhcccCCCc
Q 017844 304 -RLDAEIKHEVCHWAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDPV 361 (365)
Q Consensus 304 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 361 (365)
.+.+.....+.+.+..|+.. +.+.+-. +.+....+|++..+.+ +|+.|++++-.++
T Consensus 305 l~i~p~~~~~~~~qa~~~s~~~L~~~l~~--l~~~D~~lK~~~~~~l~lE~~l~~~~~~~~ 363 (585)
T PRK14950 305 LDLTADEKAALQKVSQIANLEALTKWVKA--FSQLDFQLRTTSYGQLPLELAVIEALLVPV 363 (585)
T ss_pred ccCCHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHHhcCCCchHHHHHHHHHHhcCCc
Confidence 12334456667777778766 4444333 4455557777777777 9999999987764
No 39
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=3e-38 Score=295.34 Aligned_cols=333 Identities=21% Similarity=0.287 Sum_probs=254.6
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+|++||||++|++++||+.+++.+..++..++.+| ++|+||+|+|||++++.+++.+.|+.... ..||+.
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~---------~~~c~~ 73 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPD---------GEPCNE 73 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCC
Confidence 79999999999999999999999999999999998 99999999999999999999998764211 235555
Q ss_pred ceeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+ .++.+.+.+. .....+++++..+. ..+ ..++++|+||||++.++..+++.|++.++++
T Consensus 74 c~~c--~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~-~~p----~~~~~~vviidea~~l~~~~~~~Ll~~le~~ 144 (355)
T TIGR02397 74 CESC--KEINSGSSLDVIEIDAASN--NGVDDIREILDNVK-YAP----SSGKYKVYIIDEVHMLSKSAFNALLKTLEEP 144 (355)
T ss_pred CHHH--HHHhcCCCCCEEEeecccc--CCHHHHHHHHHHHh-cCc----ccCCceEEEEeChhhcCHHHHHHHHHHHhCC
Confidence 5444 223222 2333333211 12223556665543 333 2567799999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.+|++++++.++.++++|||..+.|++++.+++.+++..++.++|+.++++++..+++.++||+|.+++.+++++.
T Consensus 145 ~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~ 224 (355)
T TIGR02397 145 PEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLIS 224 (355)
T ss_pred ccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence 98999999999988899999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h------
Q 017844 238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R------ 304 (365)
Q Consensus 238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~------ 304 (365)
++. .++.+. .+.....+..++++++++..+ +..++...+.++...|.+|..++..+..++.. +
T Consensus 225 ~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~~~----~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~ 300 (355)
T TIGR02397 225 FGNGNITYEDVNELLGLVDDEKLIELLEAILNK----DTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNL 300 (355)
T ss_pred hcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 653 223222 122233456788999998863 45666677788888899999999988887765 1
Q ss_pred --CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhccc
Q 017844 305 --LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRAN 357 (365)
Q Consensus 305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 357 (365)
+.+.....+.+.+..|+..-...++. .+.+.....|+...+++ ++..++++|
T Consensus 301 ~~i~~~~~~~l~~~a~~~s~~~L~~~l~-~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 301 LAVLESEQEFLKELALKLSLEFLLRLLD-ILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred cccCHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 12223355566777777664444343 35666656666777777 888888875
No 40
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.9e-37 Score=288.30 Aligned_cols=328 Identities=20% Similarity=0.256 Sum_probs=248.5
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
|+|++||||++|++++||+.+.+.+..+++.++.+| ++|+||+|+|||++++++++.+.++.... .+..+
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~~~~~------ 75 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDD---PNEDF------ 75 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---CCCCC------
Confidence 679999999999999999999999999999999887 99999999999999999999887743210 00000
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~ 159 (365)
. ...+++... .......+++.++.+.. .+ ..++++|++|||++.++..+++.|++.+++++.
T Consensus 76 ---~--------~~~~~l~~~--~~~~~~~i~~l~~~~~~-~p----~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~ 137 (367)
T PRK14970 76 ---S--------FNIFELDAA--SNNSVDDIRNLIDQVRI-PP----QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPA 137 (367)
T ss_pred ---C--------cceEEeccc--cCCCHHHHHHHHHHHhh-cc----ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCC
Confidence 0 001222211 11112345555555432 22 245779999999999999999999999999988
Q ss_pred ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
++.+|++++...++.++++|||..++|.+++.+++..++..++.++|+.+++++++.++..++||+|.+++.++.++.+.
T Consensus 138 ~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~ 217 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFC 217 (367)
T ss_pred ceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred C-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h--------
Q 017844 240 Y-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R-------- 304 (365)
Q Consensus 240 ~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~-------- 304 (365)
. .++.+. .+.....+..++++++++..+ +..++...+.+++..|.+|..++..+.+++.. +
T Consensus 218 ~~~it~~~v~~~~~~~~~~~if~l~~ai~~~----~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l 293 (367)
T PRK14970 218 GKNITRQAVTENLNILDYDTYINVTDLILEN----KIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALL 293 (367)
T ss_pred CCCCCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccc
Confidence 3 233221 122233456789999999874 44556666777888899999999999887665 1
Q ss_pred -CCHHHHHHHHHHHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhcccCCCc
Q 017844 305 -LDAEIKHEVCHWAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDPV 361 (365)
Q Consensus 305 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 361 (365)
+.+.....+.+.+.+|+.. +.+.+- .+.+....+|++..+.. +|+.|+++++.-.
T Consensus 294 ~~~~~~~~~~~~~a~~~s~~~L~~~l~--~l~~~d~~lK~~~~~~l~lE~~l~~l~~~~~ 351 (367)
T PRK14970 294 EVGEQAKKRYEVQSQKVSQSFLLSGID--IANDCDLKYKLSKNQRLLVELALMQLASINF 351 (367)
T ss_pred cCCHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHHhcCCChhHHHHHHHHHHhhccc
Confidence 1234455667777778766 444333 25555555566556665 9999999887543
No 41
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=1.4e-36 Score=282.23 Aligned_cols=311 Identities=27% Similarity=0.425 Sum_probs=236.9
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC--ccceeccccceecCC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAG 78 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~i~~~~~~~~~~~~ 78 (365)
|+|++||||++|++++|++.+++.|..++..+..+|++|+||+|+||||+++++++++.+... ..+++++..+ .
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~-~--- 78 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF-F--- 78 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh-h---
Confidence 789999999999999999999999999999998889999999999999999999999876542 1233333221 0
Q ss_pred CcceeccccccccccceecCCCC--cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844 79 SRNIDLELTTLSSANHVELSPSD--AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~ 156 (365)
..... .....+.+....... .+......+++.++......+. .+.++++||||++.++.+.++.|++++++
T Consensus 79 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vlilDe~~~l~~~~~~~L~~~le~ 151 (337)
T PRK12402 79 DQGKK---YLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL----SADYKTILLDNAEALREDAQQALRRIMEQ 151 (337)
T ss_pred hcchh---hhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC----CCCCcEEEEeCcccCCHHHHHHHHHHHHh
Confidence 00000 000000000000000 0001112344445555544443 45568999999999999999999999999
Q ss_pred hcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (365)
Q Consensus 157 ~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~ 236 (365)
++..++||++++.+.++.+++++||..+.|.+++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++.++
T Consensus 152 ~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 152 YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA 231 (337)
T ss_pred ccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88888999999988889999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCCCC--C-CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHhCCHHHHHH
Q 017844 237 VQQYPFKDNQ--A-IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLKRLDAEIKHE 312 (365)
Q Consensus 237 ~~~~~~~~~~--~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~~~~~il~~l~~~l~~~~~~~~~~~ 312 (365)
.....++.+. . +.....+..++++++++..+ +..+++..+++++ .+|.++..|++.+......+++.+...+
T Consensus 232 ~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~----~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~l~~ 307 (337)
T PRK12402 232 LAAGEITMEAAYEALGDVGTDEVIESLLDAAEAG----DFTDARKTLDDLLIDEGLSGGEVLEELLRVARSRYRGDNLAR 307 (337)
T ss_pred HcCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCHHHHHH
Confidence 6555555444 1 22224578899999998774 5677888888887 7899999999998877766678888888
Q ss_pred HHHHHHHhhhhhHH
Q 017844 313 VCHWAAYYVSISFQ 326 (365)
Q Consensus 313 ~~~~~~~~~~~~~~ 326 (365)
+.+.++.+|.++..
T Consensus 308 ~~~~l~~~d~~lk~ 321 (337)
T PRK12402 308 LHRLAADADARLTD 321 (337)
T ss_pred HHHHHHHHHHHHHc
Confidence 88888877776543
No 42
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=7.4e-36 Score=275.25 Aligned_cols=305 Identities=31% Similarity=0.508 Sum_probs=241.4
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
+|++||||++|++++|++++++.++.+++.+..+|++|+||+|+||||+++.+++++.++....
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~---------------- 69 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRE---------------- 69 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc----------------
Confidence 6999999999999999999999999999998888999999999999999999999886543210
Q ss_pred eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCce
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~ 161 (365)
.++++.+++... ...+++.+..++...+. ....+++++|||++.++...++.|+++++.++.++
T Consensus 70 -----------~~i~~~~~~~~~--~~~~~~~i~~~~~~~~~---~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~ 133 (319)
T PRK00440 70 -----------NFLELNASDERG--IDVIRNKIKEFARTAPV---GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNT 133 (319)
T ss_pred -----------ceEEeccccccc--hHHHHHHHHHHHhcCCC---CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCC
Confidence 012222222111 11244555555554443 22457899999999999999999999999988889
Q ss_pred eEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 017844 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241 (365)
Q Consensus 162 ~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~ 241 (365)
.+|++++...++.+++++||.+++|++++.+++..+++.++.++|+.+++++++.+++.++||+|.+++.|+.++..+..
T Consensus 134 ~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~ 213 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKE 213 (319)
T ss_pred eEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887655
Q ss_pred CCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Q 017844 242 FKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWA 317 (365)
Q Consensus 242 ~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~~ 317 (365)
++.+. .+.....+..++++++++.. ++..+++..+++++ ..|.++..|+..+..++.. .++.+...++.+.+
T Consensus 214 it~~~v~~~~~~~~~~~i~~l~~~~~~----~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~ 289 (319)
T PRK00440 214 VTEEAVYKITGTARPEEIREMIELALN----GDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAI 289 (319)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 55543 23344566788999999886 45677888889988 4899999999998876543 45666666666666
Q ss_pred HHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844 318 AYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS 358 (365)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 358 (365)
+.+++++ |++..+.+ +|..++++++
T Consensus 290 ~~~d~~~----------------k~g~~~~~~le~~i~~~~~ 315 (319)
T PRK00440 290 GEADFRI----------------TEGANERIQLEALLAKLAL 315 (319)
T ss_pred HHHHHHH----------------HCCCCHHHHHHHHHHHHHH
Confidence 6666553 34445555 7777777654
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-34 Score=255.06 Aligned_cols=321 Identities=20% Similarity=0.221 Sum_probs=227.1
Q ss_pred CCcccccCCCCCCccccCHHHH---HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
||.+++.||+++++++||++.+ +-|+.+++.+..++++|||||||||||+|+.|++...+.
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~---------------- 75 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA---------------- 75 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc----------------
Confidence 5789999999999999999998 689999999999999999999999999999999965221
Q ss_pred CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
+..+++...+. ..++++++....... .++..|+||||+|++++..|+.||..+|+.
T Consensus 76 ----------------f~~~sAv~~gv---kdlr~i~e~a~~~~~-----~gr~tiLflDEIHRfnK~QQD~lLp~vE~G 131 (436)
T COG2256 76 ----------------FEALSAVTSGV---KDLREIIEEARKNRL-----LGRRTILFLDEIHRFNKAQQDALLPHVENG 131 (436)
T ss_pred ----------------eEEeccccccH---HHHHHHHHHHHHHHh-----cCCceEEEEehhhhcChhhhhhhhhhhcCC
Confidence 12233322232 246677766644433 356789999999999999999999999953
Q ss_pred cCceeEEEEecCCC--cccHHHhccceeEEecCCCHHHHHHHHHHHHHH--cCCC-----CCHHHHHHHHHHcCCCHHHH
Q 017844 158 SASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK--EGLQ-----LPSGFATRLAEKSNRSLRRA 228 (365)
Q Consensus 158 ~~~~~~Il~t~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~--~~~~-----i~~~~~~~i~~~~~g~lr~a 228 (365)
.+.+|.+|+... .+.++|+|||+++.|.+++.+++.+.+++.+.. .|+. +++++.+.++..++||.|.+
T Consensus 132 --~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 132 --TIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred --eEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 455666665544 588999999999999999999999999984443 3444 78999999999999999999
Q ss_pred HHHHHHHHhcCCCCC---CCC--------CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHH
Q 017844 229 ILSFETCRVQQYPFK---DNQ--------AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRL 297 (365)
Q Consensus 229 i~~l~~~~~~~~~~~---~~~--------~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l 297 (365)
+|.|+.+......-. .+. ........+...+++++..++-+..+...+.=++-.+++.|.+|..|.+.+
T Consensus 210 LN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRl 289 (436)
T COG2256 210 LNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRL 289 (436)
T ss_pred HHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999998876654211 000 011111224556777777776666667777777778889999999999888
Q ss_pred HHHHHHhCC---HHHHHHHHHHHHHhh----hhhHHHHhhhcccCC-CCCccccccccc--cccchhcccCCCcccC
Q 017844 298 LYELLKRLD---AEIKHEVCHWAAYYV----SISFQILFIVPLVDF-PSPLECSAQAAY--IQPPLIRANSDPVALH 364 (365)
Q Consensus 298 ~~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 364 (365)
...-.+.+. +....-....+.-++ .+-...|.+ +++++ .+||.|+.=-+| ...-+=..-+-+|+.|
T Consensus 290 v~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i~LAq-avvyLA~aPKSNavY~A~~~A~~d~~~~~~~~vP~H 365 (436)
T COG2256 290 VRIASEDIGLADPNALQVAVAALDAVERLGSPEARIALAQ-AVVYLALAPKSNAVYTAINAALADAKEGGSLEVPKH 365 (436)
T ss_pred HHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHHHHHH-HHHHHHhCCccHHHHHHHHHHHHHHHhcCCCCCChh
Confidence 887777442 332222222221111 222334444 34554 689999877666 2222222344455555
No 44
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=8.5e-34 Score=273.59 Aligned_cols=278 Identities=26% Similarity=0.356 Sum_probs=210.4
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHc---CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~---~~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
|+|++||||++|++++||+.+++.++.|+.. |. .++++|+||||+||||+|+++|+++...
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~--------------- 66 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWE--------------- 66 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---------------
Confidence 7999999999999999999999999999864 33 3449999999999999999999976211
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----HHHHHHHH
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----EAQHSLRR 152 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----~~~~~Ll~ 152 (365)
.+++++++... ...++..+.......++ ...+++||||||+|.+.. ...+.|++
T Consensus 67 -----------------~ielnasd~r~--~~~i~~~i~~~~~~~sl---~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~ 124 (482)
T PRK04195 67 -----------------VIELNASDQRT--ADVIERVAGEAATSGSL---FGARRKLILLDEVDGIHGNEDRGGARAILE 124 (482)
T ss_pred -----------------EEEEccccccc--HHHHHHHHHHhhccCcc---cCCCCeEEEEecCcccccccchhHHHHHHH
Confidence 13333333221 22345555555444433 113678999999999976 56788999
Q ss_pred HHhhhcCceeEEEEecCCCcccH-HHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 017844 153 TMEKYSASCRLILCCNSSSKVTE-AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231 (365)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~~l~~-~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~ 231 (365)
+++.. +..+|++||+...+.. ++++||..+.|++|+.+++..+|..++.++|+.+++++++.|++.++||+|.|++.
T Consensus 125 ~l~~~--~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~ 202 (482)
T PRK04195 125 LIKKA--KQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAIND 202 (482)
T ss_pred HHHcC--CCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99853 5679999999888776 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCH-H
Q 017844 232 FETCRVQQYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDA-E 308 (365)
Q Consensus 232 l~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~~-~ 308 (365)
|+.++.....++.+. .+...+++..+|++++.++.... ...+...+++ ..++|+.++.++.+++...+.+ +
T Consensus 203 Lq~~a~~~~~it~~~v~~~~~~d~~~~if~~l~~i~~~k~---~~~a~~~~~~---~~~~~~~i~~~l~en~~~~~~~~~ 276 (482)
T PRK04195 203 LQAIAEGYGKLTLEDVKTLGRRDREESIFDALDAVFKARN---ADQALEASYD---VDEDPDDLIEWIDENIPKEYDDPE 276 (482)
T ss_pred HHHHhcCCCCCcHHHHHHhhcCCCCCCHHHHHHHHHCCCC---HHHHHHHHHc---ccCCHHHHHHHHHhccccccCCHH
Confidence 999665444444333 13335667788999999997533 3444444443 5689999999999999886543 3
Q ss_pred HHH---HHHHHHHHhhhh
Q 017844 309 IKH---EVCHWAAYYVSI 323 (365)
Q Consensus 309 ~~~---~~~~~~~~~~~~ 323 (365)
... ++...+..|.++
T Consensus 277 ~~~~a~~~ls~ad~~~~~ 294 (482)
T PRK04195 277 DIARAYDALSRADIFLGR 294 (482)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 333 344444444444
No 45
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=100.00 E-value=1.1e-31 Score=246.79 Aligned_cols=276 Identities=24% Similarity=0.341 Sum_probs=206.3
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
.+|++||||++|++++||+++.+.++.+++.++.+| ++++||+|+||||+++++++.+..+
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~------------------ 70 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE------------------ 70 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc------------------
Confidence 379999999999999999999999999999999988 6669999999999999999865211
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHhhhc
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-SREAQHSLRRTMEKYS 158 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L-~~~~~~~Ll~~le~~~ 158 (365)
...+++.+ +. ...+++.+..+....+. .++++++||||+|.+ ..++++.|..++++++
T Consensus 71 --------------~~~i~~~~-~~--~~~i~~~l~~~~~~~~~----~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~ 129 (316)
T PHA02544 71 --------------VLFVNGSD-CR--IDFVRNRLTRFASTVSL----TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS 129 (316)
T ss_pred --------------ceEeccCc-cc--HHHHHHHHHHHHHhhcc----cCCCeEEEEECcccccCHHHHHHHHHHHHhcC
Confidence 01222222 11 12234444444443332 345689999999999 6777888888899998
Q ss_pred CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 017844 159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLE-------FIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231 (365)
Q Consensus 159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~-------~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~ 231 (365)
.++.||++|+...++.++++|||..+.|+.|+.++...++. .++.++|+.++++++..+++.+.||+|++++.
T Consensus 130 ~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~ 209 (316)
T PHA02544 130 KNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINE 209 (316)
T ss_pred CCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 89999999999999999999999999999999988775544 44556899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHH
Q 017844 232 FETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKH 311 (365)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~~~~~~ 311 (365)
++.++.. ..++... +.. .....++++++.+... +....+. .... .++++..++.++.+++...+......
T Consensus 210 l~~~~~~-~~i~~~~-l~~-~~~~~~~~l~~~l~~~----d~~~~~~-~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 279 (316)
T PHA02544 210 LQRYAST-GKIDAGI-LSE-VTNSDIDDVVEALKAK----DFKAVRA-LAPN--YANDYASFVGKLYDELYPQVTPPSII 279 (316)
T ss_pred HHHHHcc-CCCCHHH-HHH-hhHHHHHHHHHHHHcC----CHHHHHH-HHHH--hccCHHHHHHHHHHHHHHhCCHHHHH
Confidence 9987643 2232211 111 1134556666665443 2333333 2222 26789999999999998888888888
Q ss_pred HHHHHHHHhhhhhH
Q 017844 312 EVCHWAAYYVSISF 325 (365)
Q Consensus 312 ~~~~~~~~~~~~~~ 325 (365)
++.+.++.++.++.
T Consensus 280 ~~~~~l~~~~~~~~ 293 (316)
T PHA02544 280 RLIEIIGENNQYHG 293 (316)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887775533
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=4e-32 Score=257.29 Aligned_cols=321 Identities=21% Similarity=0.249 Sum_probs=224.0
Q ss_pred CcccccCCCCCCccccCHHHHHH---HHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQN---LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~---l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~ 78 (365)
||++||||++|++++||++++.. +..++..+..++++|+||||+||||+|+.+++.+... |
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-----------~----- 64 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-----------F----- 64 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----------E-----
Confidence 79999999999999999999766 9999999988889999999999999999999865211 1
Q ss_pred CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~ 158 (365)
+.+.+...+. ..+++.++....... .++..|++|||+|.++...++.|+..+++.
T Consensus 65 ----------------~~l~a~~~~~---~~ir~ii~~~~~~~~-----~g~~~vL~IDEi~~l~~~~q~~LL~~le~~- 119 (413)
T PRK13342 65 ----------------EALSAVTSGV---KDLREVIEEARQRRS-----AGRRTILFIDEIHRFNKAQQDALLPHVEDG- 119 (413)
T ss_pred ----------------EEEecccccH---HHHHHHHHHHHHhhh-----cCCceEEEEechhhhCHHHHHHHHHHhhcC-
Confidence 1112111111 124455544432211 235689999999999999999999999862
Q ss_pred CceeEEEEecCC--CcccHHHhccceeEEecCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 159 ASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE--GL-QLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 159 ~~~~~Il~t~~~--~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~--~~-~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
.+.+|.+++.. ..+.++++|||..+.|.+++.+++..++++.+... ++ .+++++++.+++.++||+|.+++.++
T Consensus 120 -~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 120 -TITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred -cEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44555554432 26889999999999999999999999999987653 54 89999999999999999999999999
Q ss_pred HHHhcCCCCCCCCC---C-----CCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC
Q 017844 234 TCRVQQYPFKDNQA---I-----PAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL 305 (365)
Q Consensus 234 ~~~~~~~~~~~~~~---~-----~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~ 305 (365)
.++.....++.+.. + .........++++.++.+.....+...+..++..++..|.+|..|.+++.....+.+
T Consensus 199 ~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 199 LAALGVDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHccCCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 88665333332210 0 000011234556666555433355677888889999999999999999999887754
Q ss_pred C---HHHHHHHHHHHHHhh----hhhHHHHhhhcccCCCCCccccccccc--cccchhcccCCCcccC
Q 017844 306 D---AEIKHEVCHWAAYYV----SISFQILFIVPLVDFPSPLECSAQAAY--IQPPLIRANSDPVALH 364 (365)
Q Consensus 306 ~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 364 (365)
. +....-....+..++ .+-...|.++.+.-..+||.|++-.+| ....+=.-...||++|
T Consensus 279 g~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~~~~~~~~~~vp~~ 346 (413)
T PRK13342 279 GLADPNALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALADVREGGSLPVPLH 346 (413)
T ss_pred cccCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHhcCCCCCChh
Confidence 3 222222222222222 122445555544444799999998887 3333333356677777
No 47
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=1.7e-31 Score=264.47 Aligned_cols=322 Identities=19% Similarity=0.213 Sum_probs=218.5
Q ss_pred CCcccccCCCCCCccccCHHHH---HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
+||++||||++|++++||++++ ..++.++..++.+|++|+||||+||||+|+++++...+..
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f--------------- 80 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF--------------- 80 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcc---------------
Confidence 3899999999999999999988 4788899999999999999999999999999998652211
Q ss_pred CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
+.+++...+.. .+++.+......... .++..++||||+|.++...++.|+..+++.
T Consensus 81 -----------------~~lna~~~~i~---dir~~i~~a~~~l~~----~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g 136 (725)
T PRK13341 81 -----------------SSLNAVLAGVK---DLRAEVDRAKERLER----HGKRTILFIDEVHRFNKAQQDALLPWVENG 136 (725)
T ss_pred -----------------eeehhhhhhhH---HHHHHHHHHHHHhhh----cCCceEEEEeChhhCCHHHHHHHHHHhcCc
Confidence 11111111111 233444433222111 234579999999999999999999999852
Q ss_pred cCceeEEEEecCC--CcccHHHhccceeEEecCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHcCCCHHHH
Q 017844 158 SASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-------KEGLQLPSGFATRLAEKSNRSLRRA 228 (365)
Q Consensus 158 ~~~~~~Il~t~~~--~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~-------~~~~~i~~~~~~~i~~~~~g~lr~a 228 (365)
.+.+|.+++.. ..+.+++.|||.++.|++++.+++..++++.+. .+++.+++++++.|++.++||+|++
T Consensus 137 --~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 137 --TITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred --eEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 34444444433 257899999999999999999999999999887 4678999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCC-CCCCCCCCHHH--------------HHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHH
Q 017844 229 ILSFETCRVQQYPFKD-NQAIPAMDWEE--------------FVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV 293 (365)
Q Consensus 229 i~~l~~~~~~~~~~~~-~~~~~~~~~~~--------------~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~i 293 (365)
++.|+.++.....-.. ...++....++ .-.+.+.++.+.-...+.+.+...+-.+++.|.+|..|
T Consensus 215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I 294 (725)
T PRK13341 215 LNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFI 294 (725)
T ss_pred HHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 9999987643211000 00011111111 11234444444444456777888888999999999999
Q ss_pred HHHHHHHHHHhCC---HHHHHHHHHHHHHhh----hhhHHHHhhhcccCCCCCccccccccc-cccc-hhcccCCCcccC
Q 017844 294 LKRLLYELLKRLD---AEIKHEVCHWAAYYV----SISFQILFIVPLVDFPSPLECSAQAAY-IQPP-LIRANSDPVALH 364 (365)
Q Consensus 294 l~~l~~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~ 364 (365)
++.+.....+.+. +....-....+..++ .+-...|.+..++-..+||.|++ .++ --+. +-...+.||++|
T Consensus 295 ~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apKSns~-~a~~~a~~~~~~~~~~~vP~h 373 (725)
T PRK13341 295 FRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPKSNSV-LGFFDALKKVREEQVQDVPNH 373 (725)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCccHH-HHHHHHHHHHHhcCCCCCChH
Confidence 9999998887543 222211111111111 11244555554555589999999 666 2222 333356788887
No 48
>PRK04132 replication factor C small subunit; Provisional
Probab=99.98 E-value=1.8e-30 Score=258.19 Aligned_cols=254 Identities=31% Similarity=0.441 Sum_probs=211.3
Q ss_pred EEEEC--CCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHH
Q 017844 37 LLFYG--PPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI 114 (365)
Q Consensus 37 lll~G--p~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (365)
.+..| |++.||||+|+++|+++++...+ ..++++++++.... ..+++.+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~---------------------------~~~lElNASd~rgi--d~IR~iI 617 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWR---------------------------HNFLELNASDERGI--NVIREKV 617 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhccccc---------------------------CeEEEEeCCCcccH--HHHHHHH
Confidence 46778 99999999999999987553211 22467777764322 2588888
Q ss_pred HHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHH
Q 017844 115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQI 194 (365)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~ 194 (365)
+.++...++ ...+++|+||||+|.|+.++|++|+++||+|+.+++||++||++.+++++|+|||+.++|++++.+++
T Consensus 618 k~~a~~~~~---~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i 694 (846)
T PRK04132 618 KEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI 694 (846)
T ss_pred HHHHhcCCc---CCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHH
Confidence 888876665 22357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhH
Q 017844 195 VKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKR 272 (365)
Q Consensus 195 ~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~ 272 (365)
..+|.+++.++|+.++++++..|+..++||+|.|++.||.++.....++.+. .+........+++++..++. .+
T Consensus 695 ~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~----~~ 770 (846)
T PRK04132 695 AKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALK----GN 770 (846)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhc----Cc
Confidence 9999999999999999999999999999999999999999877655555443 12233334567777776665 44
Q ss_pred HHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhhhhhHH
Q 017844 273 LFQVRGKLYELL-LNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAAYYVSISFQ 326 (365)
Q Consensus 273 ~~~~~~~l~~l~-~~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 326 (365)
+.+++..+++++ ..|+++..++.+++..+.. .+++..+.++...++.++.++..
T Consensus 771 ~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~~~i~~~~k~~ll~~lae~e~rl~~ 826 (846)
T PRK04132 771 FLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDEPKKVELADKIGEYNFRLVE 826 (846)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhHHHHC
Confidence 788888899988 7899999999999999977 57889999999999999988653
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=8.4e-30 Score=233.32 Aligned_cols=295 Identities=17% Similarity=0.265 Sum_probs=210.6
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844 11 TLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 89 (365)
+|++++||+.+++.+..+++.++.+| ++|+||+|+|||++|+.+++.+.|......
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~----------------------- 58 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE----------------------- 58 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-----------------------
Confidence 68999999999999999999999999 899999999999999999999987542210
Q ss_pred ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844 90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~ 169 (365)
.+++..+.+.+........+++..+.+.. .+. .++++|+|||++|.|+.+++|+|+++||+||.++.||++|++
T Consensus 59 -h~D~~~~~~~~~~~i~v~~ir~~~~~~~~-~p~----~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~ 132 (313)
T PRK05564 59 -YVDIIEFKPINKKSIGVDDIRNIIEEVNK-KPY----EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCEN 132 (313)
T ss_pred -CCCeEEeccccCCCCCHHHHHHHHHHHhc-Ccc----cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 01112222211122222346666655433 333 567899999999999999999999999999999999999999
Q ss_pred CCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCCCC
Q 017844 170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIP 249 (365)
Q Consensus 170 ~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~~~~ 249 (365)
+++++++|+|||+.++|.+++.+++..++.+... .++++.++.++..++|++++|...+..-..
T Consensus 133 ~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~~------------ 196 (313)
T PRK05564 133 LEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDSL------------ 196 (313)
T ss_pred hHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccHH------------
Confidence 9999999999999999999999999999986542 467888999999999999999866532210
Q ss_pred CCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh------------CCHHHHHHHHHHH
Q 017844 250 AMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR------------LDAEIKHEVCHWA 317 (365)
Q Consensus 250 ~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~------------~~~~~~~~~~~~~ 317 (365)
...++.++++++.+..++ .....+.+..+...+.++..++.++...+.+- ++.+....+...+
T Consensus 197 -~~~~~~~~~~~~~l~~~~----~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a 271 (313)
T PRK05564 197 -KNIRNMSLEILKDIKKSN----INILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHIS 271 (313)
T ss_pred -HHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHH
Confidence 113456777777776532 23334445556667788888888888776651 2233345566666
Q ss_pred HHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcc
Q 017844 318 AYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRA 356 (365)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 356 (365)
..++......++. .+.+....+++...+.. ++..++++
T Consensus 272 ~~~s~~~L~~~~~-~l~~~~~~l~~n~n~~l~le~lll~~ 310 (313)
T PRK05564 272 EKFSYKKLNKMIE-IINDTRDNLSSNVNPTLVFDSMLIKM 310 (313)
T ss_pred hhCCHHHHHHHHH-HHHHHHHHHHHcCCccHHHHHHHHhh
Confidence 6666442333232 23343334444555555 77777765
No 50
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.97 E-value=4.2e-30 Score=222.64 Aligned_cols=213 Identities=31% Similarity=0.452 Sum_probs=181.4
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
|+|++||||.++.++++|++++..+......++.||+|+|||||+|||+...+.++.+.++...
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~---------------- 92 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPT---------------- 92 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCc----------------
Confidence 6899999999999999999999999999989999999999999999999999999988764211
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCC-CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI-DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~ 159 (365)
.....++++++....+ .+++-+..++..... .++....++.+|+||+|.|+.++|++|.+.++.+..
T Consensus 93 ----------~~m~lelnaSd~rgid--~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~ 160 (360)
T KOG0990|consen 93 ----------TSMLLELNASDDRGID--PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTA 160 (360)
T ss_pred ----------hhHHHHhhccCccCCc--chHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhcc
Confidence 0112445555443333 455666666655432 122234789999999999999999999999999999
Q ss_pred ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
+++|++++|.+.++.++++|||..++|.+++..+....+.++++.+....+++....+++.+.||+|.|+|.|+......
T Consensus 161 n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~ 240 (360)
T KOG0990|consen 161 NTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKV 240 (360)
T ss_pred ceEEEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred CC
Q 017844 240 YP 241 (365)
Q Consensus 240 ~~ 241 (365)
..
T Consensus 241 ~~ 242 (360)
T KOG0990|consen 241 ME 242 (360)
T ss_pred CC
Confidence 43
No 51
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=1.7e-29 Score=234.96 Aligned_cols=200 Identities=23% Similarity=0.379 Sum_probs=162.2
Q ss_pred CCCccccCHHHHHHHHHHHHcCC---------CCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 11 TLDQVIVHQDIAQNLKKLVTEQD---------CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~~~---------~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.|++++||+.+++.|+.++..++ .+| ++|+||+|+|||++|+.+|+.++|.... ..||+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----------~~~Cg~ 72 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----------EPGCGE 72 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----------CCCCCC
Confidence 58999999999999999999877 788 9999999999999999999999887532 235666
Q ss_pred ceeccccccccccceec---CCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSANHVEL---SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..| ..+..+.|.++ .+.. .......++++++.+... + ..++++|+||||+|.|++.++|.|+++||++
T Consensus 73 C~~C--~~~~~~~hpD~~~i~~~~-~~i~i~~iR~l~~~~~~~-p----~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 73 CRAC--RTVLAGTHPDVRVVAPEG-LSIGVDEVRELVTIAARR-P----STGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CHHH--HHHhcCCCCCEEEecccc-ccCCHHHHHHHHHHHHhC-c----ccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 6555 44444445443 2221 222233467766655432 2 2567899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
+.++.||++|+++..++++|+|||+.++|++|+.+++.++|.+ +.+ ++++.+..++..++|+++.|+.+++
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999973 223 5688999999999999999987753
No 52
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.97 E-value=6.8e-31 Score=230.65 Aligned_cols=285 Identities=19% Similarity=0.267 Sum_probs=196.6
Q ss_pred CcccccCCCCCCccccCHHHH---HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844 2 LWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~ 78 (365)
|.+|+.||++++|.+||++++ ..|+..++++++|.++|+|||||||||+|+.|+..--
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk------------------- 187 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK------------------- 187 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC-------------------
Confidence 678999999999999999987 5788899999999999999999999999999987321
Q ss_pred CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~ 158 (365)
-.+..++++.+...+.. .++++++.......+ ..++.|+||||+|++++..|+.|+..+|..
T Consensus 188 ----------~~SyrfvelSAt~a~t~---dvR~ife~aq~~~~l----~krkTilFiDEiHRFNksQQD~fLP~VE~G- 249 (554)
T KOG2028|consen 188 ----------KHSYRFVELSATNAKTN---DVRDIFEQAQNEKSL----TKRKTILFIDEIHRFNKSQQDTFLPHVENG- 249 (554)
T ss_pred ----------CCceEEEEEeccccchH---HHHHHHHHHHHHHhh----hcceeEEEeHHhhhhhhhhhhcccceeccC-
Confidence 11123455555444433 467777766555443 456789999999999999999999988853
Q ss_pred CceeEEEEecCCC--cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----c---------CCCCCHHHHHHHHHHcCC
Q 017844 159 ASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----E---------GLQLPSGFATRLAEKSNR 223 (365)
Q Consensus 159 ~~~~~Il~t~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~---------~~~i~~~~~~~i~~~~~g 223 (365)
.+.+|.+|+... .+..++.|||.++.+.+++.+.+..+|.+-..- + .+.+++.++++++..+.|
T Consensus 250 -~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 250 -DITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred -ceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 566777666554 578999999999999999999999999884431 1 124778999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-CCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 017844 224 SLRRAILSFETCRVQQYP-FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL 302 (365)
Q Consensus 224 ~lr~ai~~l~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~ 302 (365)
|.|.|+|.|+........ -...... .-.+.++- ..++. +...++.+.+.+|+.+
T Consensus 329 DaR~aLN~Lems~~m~~tr~g~~~~~-----~lSidDvk-e~lq~-s~~~YDr~Ge~HYntI------------------ 383 (554)
T KOG2028|consen 329 DARAALNALEMSLSMFCTRSGQSSRV-----LLSIDDVK-EGLQR-SHILYDRAGEEHYNTI------------------ 383 (554)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCcccc-----eecHHHHH-HHHhh-ccceecccchhHHHHH------------------
Confidence 999999999976221111 0000100 01112222 22221 1122333334444332
Q ss_pred HhCCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccccccchhcccCCCcccC
Q 017844 303 KRLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAYIQPPLIRANSDPVALH 364 (365)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (365)
+.+++.++-.=.+..++.+.-+++.+++|.|+-++|+|++|++++|-
T Consensus 384 ---------------SA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASEDIGla 430 (554)
T KOG2028|consen 384 ---------------SALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLA 430 (554)
T ss_pred ---------------HHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHHHhhcccCcC
Confidence 22222222221222333344467789999999999999999999973
No 53
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=3e-29 Score=230.34 Aligned_cols=217 Identities=22% Similarity=0.367 Sum_probs=167.0
Q ss_pred ccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (365)
Q Consensus 6 k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (365)
...|+.+++++||+++.+.|...+.+|+.+| ++|+||+|+||||+++.+++.++|......... .. ..||+.|..|
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~--~~-~~~~~~c~~c 92 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE--TL-ADPDPASPVW 92 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc--cc-CCCCCCCHHH
Confidence 4689999999999999999999999999999 999999999999999999999998432111000 11 2344444333
Q ss_pred cccccccc---cceecCCC-CcC------ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844 85 ELTTLSSA---NHVELSPS-DAG------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154 (365)
Q Consensus 85 ~~~~~~~~---~~~~~~~~-~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~l 154 (365)
..+..+ ++..+... +.. ......++++.+.+.... ..++++|+||||+|.|+..++|+|++++
T Consensus 93 --~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~-----~~g~~rVviIDeAd~l~~~aanaLLk~L 165 (351)
T PRK09112 93 --RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS-----GDGNWRIVIIDPADDMNRNAANAILKTL 165 (351)
T ss_pred --HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc-----ccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence 333333 33333211 111 111123444444433322 3567899999999999999999999999
Q ss_pred hhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (365)
Q Consensus 155 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~ 234 (365)
|+++.++.||++|+.+.+++++++|||+.++|++++.+++.++|.+.....+ ++++++..+++.++|++|.|+++++.
T Consensus 166 EEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 166 EEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred hcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998554433 77999999999999999999999863
No 54
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=1.5e-28 Score=225.46 Aligned_cols=200 Identities=23% Similarity=0.333 Sum_probs=159.4
Q ss_pred CCCcccc-CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844 11 TLDQVIV-HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (365)
Q Consensus 11 ~~~~iig-~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
.|+.++| |+.+++.|+..+..++.+| ++|+||+|+||+++|+.+++.++|+.+.. ..||+.|..| ..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~---------~~~cg~C~~c--~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNG---------VEPCGTCTNC--KR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCC---------CCCCCcCHHH--HH
Confidence 4678888 9999999999999999999 89999999999999999999999875321 3467777666 55
Q ss_pred cccccceecCCC--CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEE
Q 017844 89 LSSANHVELSPS--DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILC 166 (365)
Q Consensus 89 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~ 166 (365)
+..+.|.++... +........+++..+.+.... ..++++|+||||++.|+.+++|+|+++||+||.++.||++
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~-----~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~ 146 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSG-----VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILL 146 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCC-----cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEE
Confidence 555555443211 112222234666665554332 2567899999999999999999999999999999999999
Q ss_pred ecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 167 CNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 167 t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
|+++.+++++|+|||+.++|.+++.+++.++|+. +| ++++....++.. .|++++|+.+++
T Consensus 147 t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~-~g~~~~A~~l~~ 206 (329)
T PRK08058 147 TENKHQILPTILSRCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGL-TNSVEEALALSE 206 (329)
T ss_pred eCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHH-cCCHHHHHHHhc
Confidence 9999999999999999999999999999888863 45 557766677766 479999998775
No 55
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=3.6e-28 Score=224.31 Aligned_cols=218 Identities=20% Similarity=0.291 Sum_probs=163.3
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc-ccceecCCCcceec
Q 017844 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN-KTWKIDAGSRNIDL 84 (365)
Q Consensus 7 ~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~-~~~~~~~~~~~~~~ 84 (365)
.+|+++++++||+.+++.|..++.+++.+| ++|+||+|+||+++|+.+|+.++|.........+ ......+|+.|..|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 689999999999999999999999999999 9999999999999999999999997632111000 00002223333333
Q ss_pred c-ccccccccceecCCC--CcC-----ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844 85 E-LTTLSSANHVELSPS--DAG-----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (365)
Q Consensus 85 ~-~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~ 156 (365)
. +...++++...+.+. +.+ ...-..++++.+.+... +..++++|+||||+|.|+..++|+|++++|+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~-----~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT-----AAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC-----cccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 0 022233343334331 211 11112344444433222 2356789999999999999999999999999
Q ss_pred hcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 157 ~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
++.++.||++|+++..+.++++|||+.+.|++++.+++.++|... +...+++.+..+++.++|+++.|+.+++
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999864 3344566668899999999999999886
No 56
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.96 E-value=1.6e-28 Score=206.10 Aligned_cols=193 Identities=23% Similarity=0.346 Sum_probs=136.1
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHH-----cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~-----~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
+++++.||++|++++||++++..++-+++ +...+|++||||||+||||+|+.||+++..+ +
T Consensus 13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~-----------~--- 78 (233)
T PF05496_consen 13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN-----------F--- 78 (233)
T ss_dssp -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------------E---
T ss_pred hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC-----------e---
Confidence 46788999999999999999988877664 2456789999999999999999999986321 1
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~ 156 (365)
.. .+... ..... ++...+... .+..|++|||+|++++..++.|+..||+
T Consensus 79 ----------~~--------~sg~~--i~k~~---dl~~il~~l--------~~~~ILFIDEIHRlnk~~qe~LlpamEd 127 (233)
T PF05496_consen 79 ----------KI--------TSGPA--IEKAG---DLAAILTNL--------KEGDILFIDEIHRLNKAQQEILLPAMED 127 (233)
T ss_dssp ----------EE--------EECCC----SCH---HHHHHHHT----------TT-EEEECTCCC--HHHHHHHHHHHHC
T ss_pred ----------Ee--------ccchh--hhhHH---HHHHHHHhc--------CCCcEEEEechhhccHHHHHHHHHHhcc
Confidence 00 00000 01111 222222211 2347999999999999999999999997
Q ss_pred hc------------------CceeEEEEecCCCcccHHHhcccee-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844 157 YS------------------ASCRLILCCNSSSKVTEAIRSRCLN-IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (365)
Q Consensus 157 ~~------------------~~~~~Il~t~~~~~l~~~l~sR~~~-i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i 217 (365)
.. +...+|.+|+....+..++++||.. .++..++.+++.+++++.+...++.++++++..|
T Consensus 128 ~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~I 207 (233)
T PF05496_consen 128 GKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEI 207 (233)
T ss_dssp SEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHH
T ss_pred CeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 42 2345888888888899999999975 5899999999999999999899999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhcC
Q 017844 218 AEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 218 ~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
|+.|.|.+|-|.++|..+--++
T Consensus 208 a~rsrGtPRiAnrll~rvrD~a 229 (233)
T PF05496_consen 208 ARRSRGTPRIANRLLRRVRDFA 229 (233)
T ss_dssp HHCTTTSHHHHHHHHHHHCCCC
T ss_pred HHhcCCChHHHHHHHHHHHHHH
Confidence 9999999999999999875443
No 57
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=9.2e-28 Score=217.66 Aligned_cols=202 Identities=23% Similarity=0.317 Sum_probs=153.4
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844 11 TLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 89 (365)
.|++++||+.+++.|...+..++.+| +||+||+|+||+++|.++++.++|.... +.|..+.....
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c--------------~~c~~~~~~~~ 67 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSP--------------SKNIRRRLEEG 67 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCC--------------CCcHhcccccC
Confidence 58899999999999999999999988 9999999999999999999999886521 11111100222
Q ss_pred ccccceecCCC----C----------cC-------ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHH
Q 017844 90 SSANHVELSPS----D----------AG-------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQH 148 (365)
Q Consensus 90 ~~~~~~~~~~~----~----------~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~ 148 (365)
.+++...+.+. . .+ ...-..++++.+.+ ...+. .++++|+|||++|.|+..++|
T Consensus 68 ~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l-~~~p~----~~~~kVvII~~ae~m~~~aaN 142 (314)
T PRK07399 68 NHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFL-SRPPL----EAPRKVVVIEDAETMNEAAAN 142 (314)
T ss_pred CCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHH-ccCcc----cCCceEEEEEchhhcCHHHHH
Confidence 22222222221 0 00 01112345544433 33333 568899999999999999999
Q ss_pred HHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 017844 149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228 (365)
Q Consensus 149 ~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~a 228 (365)
+|+++||+|+ ++.||++|++++++++||+|||+.++|++++.+++.++|.+....++.. .....++..++|++++|
T Consensus 143 aLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~a 218 (314)
T PRK07399 143 ALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAA 218 (314)
T ss_pred HHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHH
Confidence 9999999999 8899999999999999999999999999999999999999875433322 23578889999999999
Q ss_pred HHHHHHH
Q 017844 229 ILSFETC 235 (365)
Q Consensus 229 i~~l~~~ 235 (365)
++.++..
T Consensus 219 l~~l~~~ 225 (314)
T PRK07399 219 IANIEQL 225 (314)
T ss_pred HHHHHHH
Confidence 9988754
No 58
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2.3e-26 Score=207.81 Aligned_cols=195 Identities=21% Similarity=0.234 Sum_probs=157.6
Q ss_pred CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
+....+.+...+.+|+.+| ++|+||+|+||+++|+.+|+.++|..... ..||+.|..| ..+..+.|.+
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~---------~~~Cg~C~sC--~~~~~g~HPD 75 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG---------DQPCGQCHSC--HLFQAGNHPD 75 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHH--HHHhcCCCCC
Confidence 6778899999999999999 99999999999999999999999976432 3567777666 5555555544
Q ss_pred ---cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844 97 ---LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (365)
Q Consensus 97 ---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l 173 (365)
+.+.+.....-..+|++.+.+..... .++++|+|||++|.|+..++|+|||+||||++++.||++|++++++
T Consensus 76 ~~~i~p~~~~~I~id~iR~l~~~~~~~~~-----~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~l 150 (325)
T PRK06871 76 FHILEPIDNKDIGVDQVREINEKVSQHAQ-----QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAAL 150 (325)
T ss_pred EEEEccccCCCCCHHHHHHHHHHHhhccc-----cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhC
Confidence 33322222333456776666554332 5678999999999999999999999999999999999999999999
Q ss_pred cHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 174 ~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
++||+|||+.+.|++++.+++.++|.... ..+++.+..++..++|++..|+..++
T Consensus 151 lpTI~SRC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 151 LPTIYSRCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLE 205 (325)
T ss_pred chHHHhhceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhh
Confidence 99999999999999999999999998653 23445567778899999999987764
No 59
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=1.5e-27 Score=217.82 Aligned_cols=195 Identities=19% Similarity=0.248 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
+....+.+...+.+++.+| ++|+||+|+||+++|+.+|+.++|..+.. ..||+.|..| ..+..+.|.+
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~---------~~~Cg~C~sC--~~~~~g~HPD 75 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQG---------HKSCGHCRGC--QLMQAGTHPD 75 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHH--HHHHcCCCCC
Confidence 5678899999999999999 99999999999999999999999965432 3467777666 5555554444
Q ss_pred ---cCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 97 ---LSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 97 ---~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
+.+... ....-..++++.+.+..... .++++|+|||++|.|+.+++|+|||+||||++++.||++|+++++
T Consensus 76 ~~~i~p~~~~~~I~idqiR~l~~~~~~~~~-----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 76 YYTLTPEKGKSSLGVDAVREVTEKLYEHAR-----LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred EEEEecccccccCCHHHHHHHHHHHhhccc-----cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 333322 12334457777666655433 578899999999999999999999999999999999999999999
Q ss_pred ccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 173 l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
+++||+|||+.+.|++++.+++..+|... ..++++.+..+++.++|++++|+.+++
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999999999999999999999999742 236677788899999999999998875
No 60
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=1.1e-26 Score=211.58 Aligned_cols=189 Identities=22% Similarity=0.307 Sum_probs=151.1
Q ss_pred HHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee---cCCC
Q 017844 25 LKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE---LSPS 100 (365)
Q Consensus 25 l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 100 (365)
.+.++.+|+.+| ++|+||+|+|||++|+.+|+.++|..+.. ..||+.|..| ..+..+.|.+ +.+.
T Consensus 12 ~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~---------~~~Cg~C~sC--~~~~~g~HPD~~~i~~~ 80 (328)
T PRK05707 12 WQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQG---------GGACGSCKGC--QLLRAGSHPDNFVLEPE 80 (328)
T ss_pred HHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHH--HHHhcCCCCCEEEEecc
Confidence 344566799999 99999999999999999999999976431 4577877777 5555555543 3343
Q ss_pred CcC-ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhc
Q 017844 101 DAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179 (365)
Q Consensus 101 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~s 179 (365)
..+ ......++++.+.+..... .++++|+||||+|.|+.+++|+|+++||||+.++.||++|++++.+++||+|
T Consensus 81 ~~~~~i~id~iR~l~~~~~~~~~-----~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S 155 (328)
T PRK05707 81 EADKTIKVDQVRELVSFVVQTAQ-----LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS 155 (328)
T ss_pred CCCCCCCHHHHHHHHHHHhhccc-----cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh
Confidence 221 2333467777666554332 5678999999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 180 R~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
||+.+.|++++.+++.++|..... ..+++....++..++|+++.|+.+++
T Consensus 156 Rc~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 156 RCQQQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred hceeeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 999999999999999999986431 24577777888999999999998764
No 61
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.94 E-value=1.6e-25 Score=212.38 Aligned_cols=267 Identities=23% Similarity=0.344 Sum_probs=198.9
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHH--------------------------------cCCCCe--EEEECCCCCcH
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT--------------------------------EQDCPH--LLFYGPPGSGK 47 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~--------------------------------~~~~~~--lll~Gp~G~GK 47 (365)
+|++||+|+.|.|+.|.+.+-+.+..|++ .++.+. ++|+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 79999999999999998887777777764 123333 89999999999
Q ss_pred HHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCC
Q 017844 48 KTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKG 127 (365)
Q Consensus 48 Ttla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 127 (365)
||+|+.+|+.. | +. .+++++++..... .+++.+........+ +..
T Consensus 340 TTLAHViAkqa-----------G-----------Ys----------VvEINASDeRt~~--~v~~kI~~avq~~s~-l~a 384 (877)
T KOG1969|consen 340 TTLAHVIAKQA-----------G-----------YS----------VVEINASDERTAP--MVKEKIENAVQNHSV-LDA 384 (877)
T ss_pred hHHHHHHHHhc-----------C-----------ce----------EEEecccccccHH--HHHHHHHHHHhhccc-ccc
Confidence 99999999953 1 11 2778888765433 466666666555544 234
Q ss_pred CCCceEEEEeCCCCCCHHHHHHHHHHHhh------hcC---------------ceeEEEEecCCCc-ccHHHhccceeEE
Q 017844 128 KRGFKVLVLNEVDKLSREAQHSLRRTMEK------YSA---------------SCRLILCCNSSSK-VTEAIRSRCLNIR 185 (365)
Q Consensus 128 ~~~~~vliiDE~~~L~~~~~~~Ll~~le~------~~~---------------~~~~Il~t~~~~~-l~~~l~sR~~~i~ 185 (365)
.+++.++||||+|.-...+.+.++..++. .+. .-.+|++||+... -+..++--|+++.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~ 464 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIA 464 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEE
Confidence 57889999999999888899999999872 111 1249999998763 4456677789999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--------CCCCCCHHHHH
Q 017844 186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--------AIPAMDWEEFV 257 (365)
Q Consensus 186 ~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~--------~~~~~~~~~~i 257 (365)
|.+|+...+.+.|+.+|.+||+.++..++..+++.+++|+|.+||.||.++..+....... .....+....+
T Consensus 465 f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~sl 544 (877)
T KOG1969|consen 465 FVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKNVGAKSNSDSL 544 (877)
T ss_pred ecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhhhcccccccch
Confidence 9999999999999999999999999999999999999999999999999988766421111 12233445667
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHHHHcC---CChHHHHHHHHHHHHH
Q 017844 258 FEIASDIMQEQSPKRLFQVRGKLYELLLNC---VPPVVVLKRLLYELLK 303 (365)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~---~~~~~il~~l~~~l~~ 303 (365)
|.++..+++-...++...+.+.++++++.. -..+.++..++..|++
T Consensus 545 f~~w~ei~ql~k~~~~r~~~~~l~~l~~~~~l~~~servlqg~f~~~~~ 593 (877)
T KOG1969|consen 545 FSWWKEIFQLRKKDRHRSIDEQLYGLLNQVELHGNSERVLQGCFSIFLR 593 (877)
T ss_pred HHHHHHHHHHhhcccccchHHHhhhhhhhhhccCchHHHHhhhhccccc
Confidence 788887776544455556666777776432 2445577777766554
No 62
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=5.1e-26 Score=205.08 Aligned_cols=191 Identities=17% Similarity=0.279 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
+....+.+...+..++.+| ++|+||.|+||+++|+.+|+.++|.... ..||+.|..| ..+..+.|.+
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~----------~~~Cg~C~sC--~~~~~g~HPD 75 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ----------SEACGFCHSC--ELMQSGNHPD 75 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC----------CCCCCCCHHH--HHHHcCCCCC
Confidence 5778899999999999999 9999999999999999999999997642 3467777666 5555555544
Q ss_pred ---cCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 97 ---LSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 97 ---~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
+.+... .......++++.+.+.... ..++++|+|||++|.|+..++|+|+|+||||+.++.||++|+++++
T Consensus 76 ~~~i~p~~~~~~I~vdqiR~l~~~~~~~~-----~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (319)
T PRK06090 76 LHVIKPEKEGKSITVEQIRQCNRLAQESS-----QLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKR 150 (319)
T ss_pred EEEEecCcCCCcCCHHHHHHHHHHHhhCc-----ccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 344321 2223334666554443322 2567899999999999999999999999999999999999999999
Q ss_pred ccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 173 l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
++|||+|||+.+.|++|+.+++.++|.. .|+. ....+++.++|++..|+..++
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 9999999999999999999999999974 3443 235678899999999988764
No 63
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=5.7e-26 Score=205.04 Aligned_cols=194 Identities=21% Similarity=0.291 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
++.+++.+...+.+++.+| ++|+||+|+||+++|..+|+.++|...... +++.++.. ....+++++..
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~----------~~c~~c~~-~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPA----------AAQRTRQL-IAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCC----------CcchHHHH-HhcCCCCCEEE
Confidence 6788999999999999999 999999999999999999999999653211 01111110 01222333333
Q ss_pred c--CCCCcCc-----cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844 97 L--SPSDAGF-----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (365)
Q Consensus 97 ~--~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~ 169 (365)
+ .+++.+. .....++++.+.+.... ..++++|+|||++|.|+..++|+|+|+||||+.++.||++|++
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p-----~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTP-----QYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCc-----ccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 3 3332221 11234555555443332 2467899999999999999999999999999999999999999
Q ss_pred CCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 170 ~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
++++++||+|||+.+.|.+|+.+++..+|.. .| +++..+..++..++|++..|+..++
T Consensus 153 ~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 153 PARLPATIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred hhhCchHHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999999999999999999999999999974 23 4566677789999999999988764
No 64
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.94 E-value=2.6e-25 Score=188.89 Aligned_cols=183 Identities=24% Similarity=0.366 Sum_probs=142.1
Q ss_pred HHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee---cC
Q 017844 23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE---LS 98 (365)
Q Consensus 23 ~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 98 (365)
+.|++.+..++.+| ++|+||+|+|||++++.+++.+.|..... ..||+.|..| ..+....+.+ +.
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~---------~~~c~~~~~c--~~~~~~~~~d~~~~~ 70 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGG---------GEPCGECPSC--RLIEAGNHPDLHRLE 70 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHH--HHHHcCCCCcEEEec
Confidence 46788888999988 99999999999999999999998863221 3445554444 3333333322 22
Q ss_pred CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHh
Q 017844 99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~ 178 (365)
.. ........++++++.+.. .+ ..++++|+||||+|.++..+++.|++.||+++.++.||+++++..++.++++
T Consensus 71 ~~-~~~~~~~~i~~i~~~~~~-~~----~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 71 PE-GQSIKVDQVRELVEFLSR-TP----QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred cc-cCcCCHHHHHHHHHHHcc-Cc----ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 21 111222345555555433 22 2467899999999999999999999999999999999999998889999999
Q ss_pred ccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 017844 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228 (365)
Q Consensus 179 sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~a 228 (365)
|||..+.|.+++.+++.++|.+. | +++++++.+++.++||+|+|
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999999999999999999875 4 77999999999999999975
No 65
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=6.3e-25 Score=199.88 Aligned_cols=191 Identities=19% Similarity=0.256 Sum_probs=144.3
Q ss_pred CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
+...++.+... .++.+| ++|+||+|+||+++|+.+|+.++|..+... ..||+.|..| ..+..+.|.+
T Consensus 6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~--------~~~Cg~C~~C--~~~~~~~HPD 73 (342)
T PRK06964 6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPD--------GEPCGTCAAC--NWFAQGNHPD 73 (342)
T ss_pred cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCCCCHHH--HHHHcCCCCC
Confidence 45667777765 679999 999999999999999999999999764210 3467776666 4444444433
Q ss_pred ---cCCCC-------------------cC--------ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH
Q 017844 97 ---LSPSD-------------------AG--------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA 146 (365)
Q Consensus 97 ---~~~~~-------------------~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~ 146 (365)
+.+.. .+ ...-..++++.+.+.. .+ ..++++|+|||++|.|+.++
T Consensus 74 ~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~-~~----~~~~~kV~iI~~ae~m~~~A 148 (342)
T PRK06964 74 YRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGV-GT----HRGGARVVVLYPAEALNVAA 148 (342)
T ss_pred EEEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhcc-CC----ccCCceEEEEechhhcCHHH
Confidence 32221 00 1122345555544432 22 35778999999999999999
Q ss_pred HHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 017844 147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226 (365)
Q Consensus 147 ~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr 226 (365)
.|+|||+||||+.++.||++|++++++++||+|||+.+.|++|+.+++.++|... ++ ++. +.++..++|++.
T Consensus 149 aNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~~--~~~l~~~~Gsp~ 220 (342)
T PRK06964 149 ANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--ADA--DALLAEAGGAPL 220 (342)
T ss_pred HHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--ChH--HHHHHHcCCCHH
Confidence 9999999999999999999999999999999999999999999999999999753 33 332 335678899999
Q ss_pred HHHHHHH
Q 017844 227 RAILSFE 233 (365)
Q Consensus 227 ~ai~~l~ 233 (365)
.|+.+++
T Consensus 221 ~Al~~~~ 227 (342)
T PRK06964 221 AALALAS 227 (342)
T ss_pred HHHHHHC
Confidence 9987763
No 66
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.93 E-value=1.3e-25 Score=185.00 Aligned_cols=159 Identities=31% Similarity=0.498 Sum_probs=111.6
Q ss_pred cCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecc-ccccccccc
Q 017844 17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE-LTTLSSANH 94 (365)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 94 (365)
||+.+++.|...++.++.+| ++|+||+|+||+++|+.+++.++|..... .||+.|..+. .....++++
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~----------~~c~~c~~c~~~~~~~~~d~ 70 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNE----------DPCGECRSCRRIEEGNHPDF 70 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CT----------T--SSSHHHHHHHTT-CTTE
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCC----------CCCCCCHHHHHHHhccCcce
Confidence 89999999999999999999 99999999999999999999999877542 1344443330 022233444
Q ss_pred eecCCCCcC-ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844 95 VELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (365)
Q Consensus 95 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l 173 (365)
..+.+.... ......++++...+.. .+ ..++++|+||||+|.|+.+++|+||++||+|+.++.||++|+++.++
T Consensus 71 ~~~~~~~~~~~i~i~~ir~i~~~~~~-~~----~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 71 IIIKPDKKKKSIKIDQIREIIEFLSL-SP----SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI 145 (162)
T ss_dssp EEEETTTSSSSBSHHHHHHHHHHCTS-S-----TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred EEEecccccchhhHHHHHHHHHHHHH-HH----hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence 444444331 2233345555444322 22 24678999999999999999999999999999999999999999999
Q ss_pred cHHHhccceeEEecCCC
Q 017844 174 TEAIRSRCLNIRINSPT 190 (365)
Q Consensus 174 ~~~l~sR~~~i~~~~~~ 190 (365)
+++|+|||+.++|++++
T Consensus 146 l~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 146 LPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -HHHHTTSEEEEE----
T ss_pred hHHHHhhceEEecCCCC
Confidence 99999999999998864
No 67
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.6e-24 Score=200.24 Aligned_cols=204 Identities=28% Similarity=0.445 Sum_probs=154.9
Q ss_pred CccccCHHHHHHHHHHHH-cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc
Q 017844 13 DQVIVHQDIAQNLKKLVT-EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~-~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (365)
+++++++.+...+..++. .++.+| ++|+||||+||||+|.++|+.++|.........+.. ..|..+ ....
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~------~~~~~~--~~~~ 72 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC------RSCKLI--PAGN 72 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch------hhhhHH--hhcC
Confidence 367888888888888877 688999 999999999999999999999998775432221100 011111 2334
Q ss_pred cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCC
Q 017844 91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~ 170 (365)
..+++++.+++....+ ...+.++.+...... .+..++++|+||||+|.|+.++++++++++|+++.+++||++||.+
T Consensus 73 ~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~-~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 73 HPDFLELNPSDLRKID--IIVEQVRELAEFLSE-SPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred CCceEEecccccCCCc--chHHHHHHHHHHhcc-CCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 4556778888766543 233444554444332 1124678999999999999999999999999999999999999999
Q ss_pred CcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 171 ~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~ 238 (365)
.++.++|+|||+.++|++++......++ + ++++..++..+.||+|.+++.++.++..
T Consensus 150 ~~il~tI~SRc~~i~f~~~~~~~~i~~~------e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 150 SKILPTIRSRCQRIRFKPPSRLEAIAWL------E-----DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred hhccchhhhcceeeecCCchHHHHHHHh------h-----ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999999999999984443333322 2 6788999999999999999999988776
No 68
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.92 E-value=1e-23 Score=194.46 Aligned_cols=192 Identities=23% Similarity=0.303 Sum_probs=149.2
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHc----C-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
+|-.+|||++|++++|+++.++.+..++.. + ..+|++|+||||+|||++|+.+|+++..... ...+
T Consensus 14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~~------ 84 (328)
T PRK00080 14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITSG------ 84 (328)
T ss_pred hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEec------
Confidence 477899999999999999999988877752 3 3346999999999999999999997632110 0000
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~ 156 (365)
... .....+..++.. .....|++|||+|.++...++.|+..+++
T Consensus 85 -----------------------~~~--~~~~~l~~~l~~-----------l~~~~vl~IDEi~~l~~~~~e~l~~~~e~ 128 (328)
T PRK00080 85 -----------------------PAL--EKPGDLAAILTN-----------LEEGDVLFIDEIHRLSPVVEEILYPAMED 128 (328)
T ss_pred -----------------------ccc--cChHHHHHHHHh-----------cccCCEEEEecHhhcchHHHHHHHHHHHh
Confidence 000 000112222221 12347999999999998888888888876
Q ss_pred hc------------------CceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844 157 YS------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (365)
Q Consensus 157 ~~------------------~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i 217 (365)
.. ....+|++|+....+.++++||| ..+.|++++.+++.+++++.+...++.++++++..|
T Consensus 129 ~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~i 208 (328)
T PRK00080 129 FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEI 208 (328)
T ss_pred cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 42 23567888888888999999998 579999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhc
Q 017844 218 AEKSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 218 ~~~~~g~lr~ai~~l~~~~~~ 238 (365)
++.++|++|.+.+.++.+...
T Consensus 209 a~~~~G~pR~a~~~l~~~~~~ 229 (328)
T PRK00080 209 ARRSRGTPRIANRLLRRVRDF 229 (328)
T ss_pred HHHcCCCchHHHHHHHHHHHH
Confidence 999999999999999976543
No 69
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.92 E-value=1.1e-23 Score=187.11 Aligned_cols=190 Identities=18% Similarity=0.274 Sum_probs=148.7
Q ss_pred cCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccce
Q 017844 17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (365)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (365)
.|+.+++.++.++.+++.+| ++|+|| +||+++|+.+|+.++|..... ..||+.|..| ..+..+.|.
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~---------~~~Cg~C~~C--~~i~~~~HP 72 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEG---------VLPCGHCRSC--RLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHH--HHHhcCCCC
Confidence 47889999999999999999 999996 689999999999999976432 3567777666 555555555
Q ss_pred e---cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 96 E---LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 96 ~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
+ +.+. ........++++.+.+... + ..++++|+|||++|.|+..+.|+|||+||||+.++.||++|+++++
T Consensus 73 D~~~i~p~-~~~I~idqIR~l~~~~~~~-p----~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~ 146 (290)
T PRK07276 73 DVTVIEPQ-GQVIKTDTIRELVKNFSQS-G----YEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENK 146 (290)
T ss_pred CeeeecCC-CCcCCHHHHHHHHHHHhhC-c----ccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 4 3332 2223344677777766543 3 2567899999999999999999999999999999999999999999
Q ss_pred ccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 173 l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
++|||+|||+.++|++ +.+++.+++. ++|+ +++....++..+ |++++|+.+++
T Consensus 147 lLpTI~SRcq~i~f~~-~~~~~~~~L~----~~g~--~~~~a~~la~~~-~s~~~A~~l~~ 199 (290)
T PRK07276 147 VLPTIKSRTQIFHFPK-NEAYLIQLLE----QKGL--LKTQAELLAKLA-QSTSEAEKLAQ 199 (290)
T ss_pred CchHHHHcceeeeCCC-cHHHHHHHHH----HcCC--ChHHHHHHHHHC-CCHHHHHHHhC
Confidence 9999999999999976 7777777775 4554 355555556554 68999998873
No 70
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.92 E-value=2e-23 Score=178.57 Aligned_cols=189 Identities=23% Similarity=0.333 Sum_probs=150.2
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHHc-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
...||++|++++||+++++.++-.++. ....|+||+||||.||||+|..+|+++... +
T Consensus 18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn-----------~------ 80 (332)
T COG2255 18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN-----------L------ 80 (332)
T ss_pred cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC-----------e------
Confidence 467999999999999999999888753 345689999999999999999999987321 1
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS- 158 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~- 158 (365)
.. +++..+ .. ..++..-+.. -...+|+||||+|++++.+.+.|...||++.
T Consensus 81 -------k~-tsGp~l---------eK---~gDlaaiLt~--------Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~l 132 (332)
T COG2255 81 -------KI-TSGPAL---------EK---PGDLAAILTN--------LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRL 132 (332)
T ss_pred -------Ee-cccccc---------cC---hhhHHHHHhc--------CCcCCeEEEehhhhcChhHHHHhhhhhhheeE
Confidence 00 000000 00 1122222222 2345899999999999999999999999753
Q ss_pred -----------------CceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017844 159 -----------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK 220 (365)
Q Consensus 159 -----------------~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~ 220 (365)
+...+|.+|+..-.+..++++||- ..++..++.+++.+++.+-+...++.++++++..||+.
T Consensus 133 DI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r 212 (332)
T COG2255 133 DIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARR 212 (332)
T ss_pred EEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh
Confidence 234588889998899999999995 78888999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhc
Q 017844 221 SNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 221 ~~g~lr~ai~~l~~~~~~ 238 (365)
|.|-+|-|.++|.++--.
T Consensus 213 SRGTPRIAnRLLrRVRDf 230 (332)
T COG2255 213 SRGTPRIANRLLRRVRDF 230 (332)
T ss_pred ccCCcHHHHHHHHHHHHH
Confidence 999999999999876443
No 71
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.91 E-value=1.5e-23 Score=203.43 Aligned_cols=222 Identities=23% Similarity=0.321 Sum_probs=151.1
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC-------CCccceeccccce
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-------GAEKVKVENKTWK 74 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-------~~~~i~~~~~~~~ 74 (365)
+|.+||||++|++++|++...+.++..+......|++|+||+|||||++|+++....... ....+.++|....
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~ 133 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTAR 133 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccccc
Confidence 699999999999999999999999988877777779999999999999999998743211 1111222221100
Q ss_pred ecCCCcceeccccccccccce-ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 017844 75 IDAGSRNIDLELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~ 153 (365)
.+. +...- ..+.+.... .......+... ......+.-...+..+++|||++.|++..|+.|++.
T Consensus 134 ~~~--~~~~~--~li~~~~~p~~~~~~~~g~~g-----------~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~ 198 (531)
T TIGR02902 134 FDE--RGIAD--PLIGSVHDPIYQGAGPLGIAG-----------IPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKV 198 (531)
T ss_pred CCc--cccch--hhcCCcccchhccccccccCC-----------cccccCchhhccCCcEEEEechhhCCHHHHHHHHHH
Confidence 000 00000 000000000 00000000000 000000000123447999999999999999999999
Q ss_pred Hhhh----------------------------cCceeEEEEec-CCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHH
Q 017844 154 MEKY----------------------------SASCRLILCCN-SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK 204 (365)
Q Consensus 154 le~~----------------------------~~~~~~Il~t~-~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~ 204 (365)
|++. +.++++|++|+ +++.++++++|||..+.|++++.+++.+++++.+++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH
Confidence 9762 12346666655 567899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844 205 EGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 205 ~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
.++.+++++++.|+..+. |.|++.++++.++..+
T Consensus 279 ~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 279 IGINLEKHALELIVKYAS-NGREAVNIVQLAAGIA 312 (531)
T ss_pred cCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 999999999999988765 9999999999876543
No 72
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=1.4e-22 Score=179.23 Aligned_cols=172 Identities=16% Similarity=0.219 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceec
Q 017844 19 QDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97 (365)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (365)
...++.|...++.++.+| ++|+||+|+||+++|..+|+.++|..... .|..+ ....+++...+
T Consensus 3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~-------------~~~~HPD~~~i 66 (290)
T PRK05917 3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPE---AAYKI-------------SQKIHPDIHEF 66 (290)
T ss_pred cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHH-------------hcCCCCCEEEE
Confidence 356788999999999999 99999999999999999999999864221 12111 22223333333
Q ss_pred CCCCcC-ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHH
Q 017844 98 SPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176 (365)
Q Consensus 98 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~ 176 (365)
.+...+ ...-..++++.+.+... + ..++++|+|||++|.|+.+++|+|+|+|||||.++.||++|++++.+++|
T Consensus 67 ~p~~~~~~I~idqiR~l~~~~~~~-p----~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 67 SPQGKGRLHSIETPRAIKKQIWIH-P----YESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred ecCCCCCcCcHHHHHHHHHHHhhC-c----cCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence 333221 12233566666665443 2 35788999999999999999999999999999999999999999999999
Q ss_pred HhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 017844 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226 (365)
Q Consensus 177 l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr 226 (365)
|+|||+.+.|+++. ...++++.+..++..++|+++
T Consensus 142 I~SRcq~~~~~~~~---------------~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 142 IRSRSLSIHIPMEE---------------KTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred HHhcceEEEccchh---------------ccCCCHHHHHHHHHHhCCChh
Confidence 99999999998861 124678899999999999885
No 73
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=9.9e-22 Score=179.00 Aligned_cols=166 Identities=19% Similarity=0.335 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccc---
Q 017844 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN--- 93 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 93 (365)
+...++.+... .++.+| ++|+||+|+|||++|+.+|+.++|..+..- ..||+.|..| ..+..+.
T Consensus 6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~--------~~~Cg~C~~C--~~~~~~~HpD 73 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPG--------HKPCGECMSC--HLFGQGSHPD 73 (325)
T ss_pred cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCCcCHHH--HHHhcCCCCC
Confidence 55667776655 579999 999999999999999999999998654210 3467777666 4444444
Q ss_pred ceecCCCC----cC----ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEE
Q 017844 94 HVELSPSD----AG----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLIL 165 (365)
Q Consensus 94 ~~~~~~~~----~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il 165 (365)
+..+.+.. .+ ...-..+|++.+.+.. .+. .++++|+++|+++.|+..+++.|+++||+++.++.||+
T Consensus 74 ~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~-~p~----~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Il 148 (325)
T PRK08699 74 FYEITPLSDEPENGRKLLQIKIDAVREIIDNVYL-TSV----RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLL 148 (325)
T ss_pred EEEEecccccccccccCCCcCHHHHHHHHHHHhh-Ccc----cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEE
Confidence 44454432 11 1123356776655443 332 56789999999999999999999999999988889999
Q ss_pred EecCCCcccHHHhccceeEEecCCCHHHHHHHHHH
Q 017844 166 CCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEF 200 (365)
Q Consensus 166 ~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~ 200 (365)
+|+++..++++++|||+.+.|++++.+++..+|..
T Consensus 149 vth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 149 VSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred EeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999974
No 74
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=4.3e-22 Score=172.24 Aligned_cols=176 Identities=16% Similarity=0.200 Sum_probs=133.5
Q ss_pred CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceec---CCCCcCccchh
Q 017844 33 DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL---SPSDAGFQDRY 108 (365)
Q Consensus 33 ~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 108 (365)
..+| ++|+||.|+||..+|..+|+.+.|... ..||+.|..| ..+..+.|.++ .+.. ......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~-----------~~~Cg~C~sC--~~i~~~~HPDl~~i~p~~-~~I~id 70 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA-----------NGFCKTCESC--LKILNGKYNDFYLIFDQK-NPIKKE 70 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC-----------CCCCCCCHHH--HHHhcCCCCCEEEecCCc-ccCCHH
Confidence 3467 999999999999999999999998753 2366776666 55555555443 2322 223334
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecC
Q 017844 109 VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS 188 (365)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~ 188 (365)
.++++.+.+.... . ..++++|+|||+++.|+.++.|+||++|||||.++.||++|++++.+++||+|||+.+.|++
T Consensus 71 ~ir~l~~~l~~~s-~---e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~ 146 (261)
T PRK05818 71 DALSIINKLNRPS-V---ESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLS 146 (261)
T ss_pred HHHHHHHHHccCc-h---hcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCC
Confidence 5666666554322 1 13568999999999999999999999999999999999999999999999999999999988
Q ss_pred C----------CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 017844 189 P----------TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235 (365)
Q Consensus 189 ~----------~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~ 235 (365)
+ +..++.+.+... .+ +++ .++..++|++.+|+.+++.+
T Consensus 147 ~~~~~~~~~~~~~~~i~~~L~~~---~~--~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 147 KEKKVPFKVESNDRYFQYILLSF---YS--VDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred hhhhcccccccChHHHHHHHHHc---cC--ccH----HHHHHcCCCHHHHHHHHHHH
Confidence 8 555555555432 12 334 77778999999999999954
No 75
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=3e-22 Score=195.07 Aligned_cols=222 Identities=20% Similarity=0.258 Sum_probs=140.6
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCC----e-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCP----H-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~----~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
+|++||||+++++++||++.++.++.++.....+ . ++|+||+|+||||+++++++.+.... .+| .+
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~--------~Ew-~n 143 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQV--------QEW-SN 143 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH--------HHH-hh
Confidence 6999999999999999999999999999764332 2 99999999999999999999763211 011 00
Q ss_pred CCCcceeccccccccccc-eecCCCCcC--ccchhHHHHHHHHHHhcC-CCCCCCCCCceEEEEeCCCCCCHH---HHHH
Q 017844 77 AGSRNIDLELTTLSSANH-VELSPSDAG--FQDRYVVQEVIKEMAKNR-PIDTKGKRGFKVLVLNEVDKLSRE---AQHS 149 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~vliiDE~~~L~~~---~~~~ 149 (365)
|.. + ........ ......... ......+.+++....... ..+....++.+||+|||++.+... ++..
T Consensus 144 pv~----~--~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~ 217 (637)
T TIGR00602 144 PTL----P--DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHE 217 (637)
T ss_pred hhh----h--cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHH
Confidence 100 0 00000000 000000000 011112334443332111 110011346789999999766432 3333
Q ss_pred HHH-HHhhhcCceeEEEEecCCCc---------------ccHHHhc--cceeEEecCCCHHHHHHHHHHHHHHcCCC---
Q 017844 150 LRR-TMEKYSASCRLILCCNSSSK---------------VTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQ--- 208 (365)
Q Consensus 150 Ll~-~le~~~~~~~~Il~t~~~~~---------------l~~~l~s--R~~~i~~~~~~~~~~~~iL~~~~~~~~~~--- 208 (365)
++. ...+ ...+.+|+++++... +.+++++ |+..|.|+|++..++.+.|.+++.+++..
T Consensus 218 lLr~~~~e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 218 ILRWKYVS-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHHHHhhc-CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 433 2212 234567777774221 2268887 56789999999999999999999986532
Q ss_pred ---C-CHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844 209 ---L-PSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 209 ---i-~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
+ +++++..|+..++||+|.||+.||.++..+
T Consensus 297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred ccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcC
Confidence 2 468999999999999999999999987654
No 76
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.89 E-value=6.9e-22 Score=180.92 Aligned_cols=184 Identities=22% Similarity=0.296 Sum_probs=142.3
Q ss_pred CCCCccccCHHHHHHHHHHHH-----cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~-----~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (365)
++|++++|++++++.+..++. .+..+|++|+||||+|||++++.+++++..+. ..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~----~~---------------- 60 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL----KI---------------- 60 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----EE----------------
Confidence 579999999999999998886 24456699999999999999999999763210 00
Q ss_pred cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc------
Q 017844 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ 158 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~------ 158 (365)
...... .. ..++...+.. .+...+++|||++.+++..++.|+..+++..
T Consensus 61 ------------~~~~~~--~~---~~~l~~~l~~--------~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~ 115 (305)
T TIGR00635 61 ------------TSGPAL--EK---PGDLAAILTN--------LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIG 115 (305)
T ss_pred ------------eccchh--cC---chhHHHHHHh--------cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeec
Confidence 000000 00 0111122211 1234799999999999999988988887533
Q ss_pred ------------CceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q 017844 159 ------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL 225 (365)
Q Consensus 159 ------------~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~l 225 (365)
....+|.+++....+.++++|||. .+.|.+++.+++.+++++.+...++.+++++++.|++.++|++
T Consensus 116 ~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 116 KGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred cCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 235678888888889999999994 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 017844 226 RRAILSFETCRVQ 238 (365)
Q Consensus 226 r~ai~~l~~~~~~ 238 (365)
|.++++++.+...
T Consensus 196 R~~~~ll~~~~~~ 208 (305)
T TIGR00635 196 RIANRLLRRVRDF 208 (305)
T ss_pred chHHHHHHHHHHH
Confidence 9999999876544
No 77
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.89 E-value=3.6e-21 Score=182.48 Aligned_cols=277 Identities=13% Similarity=0.181 Sum_probs=182.7
Q ss_pred CCCccc-c--CHHHHHHHHHHHHc-----CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 11 TLDQVI-V--HQDIAQNLKKLVTE-----QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 11 ~~~~ii-g--~~~~~~~l~~~l~~-----~~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
+|+.++ | +..+...++.+.+. +. ..+++|+||+|+|||||++++++++.......+++....+
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f-------- 180 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF-------- 180 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH--------
Confidence 788887 4 34444566666542 22 2349999999999999999999987543322222222111
Q ss_pred eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhh-c
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKY-S 158 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~-~ 158 (365)
........... .... ++.. ....++++|||++.+.. ..++.|+.+++.. .
T Consensus 181 -------------~~~~~~~l~~~---~~~~-f~~~----------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~ 233 (445)
T PRK12422 181 -------------TEHLVSAIRSG---EMQR-FRQF----------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT 233 (445)
T ss_pred -------------HHHHHHHHhcc---hHHH-HHHH----------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH
Confidence 00000000000 0001 1110 12457999999998853 4677788887654 2
Q ss_pred CceeEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 017844 159 ASCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231 (365)
Q Consensus 159 ~~~~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~ 231 (365)
.+..+|++++... .+.+.++||+ ..+.+.+|+.+++..+|++.+...|+.++++++++|+....||+|++++.
T Consensus 234 ~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~ 313 (445)
T PRK12422 234 EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHA 313 (445)
T ss_pred CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 3457888887653 4678999999 59999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---hcCCCCCCCCCCCCCCHHHHHHHHHHHHHh-ccChhHHHHHHHHHHHHH-----HcCCChHH-HHHHHHHHH
Q 017844 232 FETCR---VQQYPFKDNQAIPAMDWEEFVFEIASDIMQ-EQSPKRLFQVRGKLYELL-----LNCVPPVV-VLKRLLYEL 301 (365)
Q Consensus 232 l~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~~~~~~~l~~l~-----~~~~~~~~-il~~l~~~l 301 (365)
|+.++ ++... . ...+.....+..+.+++..--. ..+++.+.++...+|.+- ...-.... ..+++++||
T Consensus 314 l~~l~~~~a~~~~-~-~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~~~Va~~~~v~~~dl~s~~R~~~i~~~Rqiamyl 391 (445)
T PRK12422 314 LTLLAKRVAYKKL-S-HQLLYVDDIKALLHDVLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYL 391 (445)
T ss_pred HHHHHHHHHHHHh-h-CCCCCHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHhCCCHHHHhcCCCCcccccHHHHHHHH
Confidence 99885 33221 1 1223333333333333221101 246677888888877532 22122222 377999999
Q ss_pred HHhCCHHHHHHHHHHHHHhhhhhH
Q 017844 302 LKRLDAEIKHEVCHWAAYYVSISF 325 (365)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~ 325 (365)
.+.+++.+.+++++.++ .||...
T Consensus 392 ~r~~t~~s~~~IG~~fg-rdHsTV 414 (445)
T PRK12422 392 CRQKLSLSYVKIGDVFS-RDHSTV 414 (445)
T ss_pred HHHhcCCCHHHHHHHhC-CChHHH
Confidence 99999999999999998 888743
No 78
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.88 E-value=5.8e-21 Score=181.70 Aligned_cols=284 Identities=11% Similarity=0.117 Sum_probs=184.1
Q ss_pred CCCCCccc-c--CHHHHHHHHHHHHc-CC-CCeEEEECCCCCcHHHHHHHHHHHhcCC--CCccceeccccceecCCCcc
Q 017844 9 PKTLDQVI-V--HQDIAQNLKKLVTE-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 9 P~~~~~ii-g--~~~~~~~l~~~l~~-~~-~~~lll~Gp~G~GKTtla~~la~~l~~~--~~~~i~~~~~~~~~~~~~~~ 81 (365)
+-+|+.++ | +..+...++.+... +. .++++|+|++|+|||+|++++++++... ....+++....+
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f-------- 182 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF-------- 182 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--------
Confidence 45788887 3 33355566666543 22 2349999999999999999999977532 221122222111
Q ss_pred eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhcC
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA 159 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~ 159 (365)
........+. . .+.+..+... ....++++|||++.+. ...++.|+.+++....
T Consensus 183 -------------~~~~~~~l~~-~----~~~~~~~~~~-------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~ 237 (450)
T PRK14087 183 -------------ARKAVDILQK-T----HKEIEQFKNE-------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE 237 (450)
T ss_pred -------------HHHHHHHHHH-h----hhHHHHHHHH-------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHH
Confidence 0000000000 0 0011111110 1245799999999886 5678888888876543
Q ss_pred -ceeEEEEecCCC----cccHHHhccce---eEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Q 017844 160 -SCRLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGL--QLPSGFATRLAEKSNRSLRRAI 229 (365)
Q Consensus 160 -~~~~Il~t~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~iL~~~~~~~~~--~i~~~~~~~i~~~~~g~lr~ai 229 (365)
+..+|++++.+. .+.+.++||+. ++.+.+|+.+++.++|++.+...|+ .++++++++|++.++||+|.+.
T Consensus 238 ~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~ 317 (450)
T PRK14087 238 NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIK 317 (450)
T ss_pred cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHH
Confidence 345788877665 35689999984 8999999999999999999998885 6999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHH-----HHcCCChHH-HHHHHHHHHHH
Q 017844 230 LSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEL-----LLNCVPPVV-VLKRLLYELLK 303 (365)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l-----~~~~~~~~~-il~~l~~~l~~ 303 (365)
+.|..+...+..-.....++.......+.++...--...+++.+.++...+|.+ ....-.... ..+++++||++
T Consensus 318 gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~~~~~~~t~~~I~~~Va~~~~i~~~dl~s~~R~~~i~~~RqiamyL~r 397 (450)
T PRK14087 318 GSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTK 397 (450)
T ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHHhhccccccCCCCHHHHHHHHHHHcCCCHHHHhCCCCCccccHHHHHHHHHHH
Confidence 999988654332101122333333333332211001124667788888877742 222222222 37899999999
Q ss_pred hCCHHHHHHHHHHHHHhhhhhH
Q 017844 304 RLDAEIKHEVCHWAAYYVSISF 325 (365)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~ 325 (365)
.+++.+.+++++.+++.+|...
T Consensus 398 ~~t~~sl~~IG~~FggrdHsTV 419 (450)
T PRK14087 398 EILNHTLAQIGEEFGGRDHTTV 419 (450)
T ss_pred HHcCCCHHHHHHHhCCCChHHH
Confidence 9999999999999999998743
No 79
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.6e-20 Score=172.59 Aligned_cols=270 Identities=17% Similarity=0.265 Sum_probs=191.5
Q ss_pred CCCcccc---CHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCcc--ceeccccceecCCCccee
Q 017844 11 TLDQVIV---HQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEK--VKVENKTWKIDAGSRNID 83 (365)
Q Consensus 11 ~~~~iig---~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~--i~~~~~~~~~~~~~~~~~ 83 (365)
+|+.++. +..+......+.+.. ..++++|+||.|+|||+|+++++++.....+.. +++....|
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f---------- 154 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF---------- 154 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH----------
Confidence 6777763 455555656665542 234499999999999999999999876544322 11111111
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHh-----cCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhh
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEK 156 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~ 156 (365)
..+++..+.. .+. .. ..++++||+++.+.. ..++.|+.+++.
T Consensus 155 --------------------------~~~~v~a~~~~~~~~Fk~----~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~ 203 (408)
T COG0593 155 --------------------------TNDFVKALRDNEMEKFKE----KY-SLDLLLIDDIQFLAGKERTQEEFFHTFNA 203 (408)
T ss_pred --------------------------HHHHHHHHHhhhHHHHHH----hh-ccCeeeechHhHhcCChhHHHHHHHHHHH
Confidence 0111111110 000 01 347999999998864 458888888887
Q ss_pred hcCce-eEEEEecCCCc----ccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 017844 157 YSASC-RLILCCNSSSK----VTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228 (365)
Q Consensus 157 ~~~~~-~~Il~t~~~~~----l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~a 228 (365)
...+. .+|+++..+++ +.+.++||+ ..+.+.+|+.+....+|.+.+...++.++++++.+++.....|+|.+
T Consensus 204 l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReL 283 (408)
T COG0593 204 LLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVREL 283 (408)
T ss_pred HHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHH
Confidence 65444 67777766653 668999997 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHH-----HHcCCChHHH-HHHHHHHHH
Q 017844 229 ILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEL-----LLNCVPPVVV-LKRLLYELL 302 (365)
Q Consensus 229 i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l-----~~~~~~~~~i-l~~l~~~l~ 302 (365)
...|+++..++... ...++.+...+.+.++...-.+ .++.++.+....+|.+ +.+.-..... .+++++||.
T Consensus 284 egaL~~l~~~a~~~--~~~iTi~~v~e~L~~~~~~~~~-itie~I~~~Va~~y~v~~~dl~s~~R~~~i~~~RqiamyL~ 360 (408)
T COG0593 284 EGALNRLDAFALFT--KRAITIDLVKEILKDLLRAGEK-ITIEDIQKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLA 360 (408)
T ss_pred HHHHHHHHHHHHhc--CccCcHHHHHHHHHHhhccccc-CCHHHHHHHHHHHhCCCHHHhhccccccccchHHHHHHHHH
Confidence 99999887775421 1234444555555555554444 7888888888888843 2333333333 679999999
Q ss_pred HhCCHHHHHHHHHHHHHhhhhhH
Q 017844 303 KRLDAEIKHEVCHWAAYYVSISF 325 (365)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~ 325 (365)
+.+++.+.+++++.++ .||...
T Consensus 361 r~lt~~Slp~IG~~Fg-rdHtTV 382 (408)
T COG0593 361 RELTNLSLPEIGKAFG-RDHTTV 382 (408)
T ss_pred HHHccCcHHHHHHHhC-CCccHH
Confidence 9999999999999999 998843
No 80
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=2.7e-20 Score=166.93 Aligned_cols=184 Identities=14% Similarity=0.156 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceec
Q 017844 19 QDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97 (365)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (365)
..+++.+++.++.++.+| ++|+|+.|+||+++++.+++.++|...+.+.-.. .|. + ...+
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~-----~p~----n----------~~~~ 62 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE-----LPA----N----------IILF 62 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC-----CCc----c----------eEEe
Confidence 356788999999999999 9999999999999999999999885432110000 000 0 0111
Q ss_pred CCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHH
Q 017844 98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177 (365)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l 177 (365)
.+. ........+++..+.+... +. ..++++|+|||+++.++..++|+|+++||+||+++.||++|+++.++.+++
T Consensus 63 d~~-g~~i~vd~Ir~l~~~~~~~-~~---~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI 137 (299)
T PRK07132 63 DIF-DKDLSKSEFLSAINKLYFS-SF---VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTI 137 (299)
T ss_pred ccC-CCcCCHHHHHHHHHHhccC-Cc---ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHH
Confidence 110 1111112344443333211 11 235889999999999999999999999999999999999999999999999
Q ss_pred hccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 178 ~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
+|||++++|.+++.+++..+|... + ++++....++..++ ++++|+.+++
T Consensus 138 ~SRc~~~~f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~ 186 (299)
T PRK07132 138 VSRCQVFNVKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYIN 186 (299)
T ss_pred HhCeEEEECCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHh
Confidence 999999999999999999998742 3 66777888887777 5999998854
No 81
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.87 E-value=2.4e-20 Score=163.52 Aligned_cols=182 Identities=14% Similarity=0.298 Sum_probs=135.2
Q ss_pred CCCccc--cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844 11 TLDQVI--VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (365)
Q Consensus 11 ~~~~ii--g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
+|++++ ++..+...++.+......++++|+||+|+||||+++++++.+........+++
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~------------------- 80 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP------------------- 80 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-------------------
Confidence 788887 47778888888876665566999999999999999999987643211111100
Q ss_pred cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhcC--ceeEE
Q 017844 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA--SCRLI 164 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~--~~~~I 164 (365)
. ..... ...+.++.+. ..++++|||++.+. ...+..|+.+++.... +..+|
T Consensus 81 --------~--~~~~~----~~~~~~~~~~-----------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li 135 (235)
T PRK08084 81 --------L--DKRAW----FVPEVLEGME-----------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLL 135 (235)
T ss_pred --------H--HHHhh----hhHHHHHHhh-----------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEE
Confidence 0 00000 0112222221 23689999999885 4456667777765432 34688
Q ss_pred EEecCCCc----ccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844 165 LCCNSSSK----VTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (365)
Q Consensus 165 l~t~~~~~----l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~ 236 (365)
++++.+.. +.+.++||| .++.+.+|+.+++.+++++.+...|+.++++++++|++.++||+|.+++.++.+.
T Consensus 136 ~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 136 ITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred EeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 88886642 579999999 7999999999999999999898899999999999999999999999999999864
No 82
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.86 E-value=7.8e-21 Score=182.37 Aligned_cols=278 Identities=16% Similarity=0.212 Sum_probs=181.2
Q ss_pred CCCccc-c--CHHHHHHHHHHHHcC-C-CCeEEEECCCCCcHHHHHHHHHHHhcCCCC--ccceeccccceecCCCccee
Q 017844 11 TLDQVI-V--HQDIAQNLKKLVTEQ-D-CPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 11 ~~~~ii-g--~~~~~~~l~~~l~~~-~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~i~~~~~~~~~~~~~~~~~ 83 (365)
+|++++ | +..+...++.+.... . ..+++|+||+|+|||++++++++++....+ ..+++++..+
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~---------- 189 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF---------- 189 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH----------
Confidence 788865 3 455667777766542 2 234999999999999999999998754321 1222222111
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhhcC-c
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSA-S 160 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~-~ 160 (365)
. ...... ... ....++.+.+ ...++++|||++.+.. ..+..|+.+++.... +
T Consensus 190 ------~-~~~~~~----~~~---~~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~ 244 (450)
T PRK00149 190 ------T-NDFVNA----LRN---NTMEEFKEKY-----------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG 244 (450)
T ss_pred ------H-HHHHHH----HHc---CcHHHHHHHH-----------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC
Confidence 0 000000 000 0011222211 1347999999998753 356778888776433 3
Q ss_pred eeEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 161 CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 161 ~~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
..+|++++.+. .+.+.++||+ .++.|.+|+.+++.++|++.+...++.++++++++|++.+.||+|.+.+.|+
T Consensus 245 ~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 245 KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN 324 (450)
T ss_pred CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence 45777777654 2668899998 4899999999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHH-----HHcCCChHH-HHHHHHHHHHHhCCH
Q 017844 234 TCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEL-----LLNCVPPVV-VLKRLLYELLKRLDA 307 (365)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l-----~~~~~~~~~-il~~l~~~l~~~~~~ 307 (365)
.+...+... ...++....+..+.++...--+..+.+.+.++...+|.+ ...+-.... ..+++++||.+.+.+
T Consensus 325 ~l~~~~~~~--~~~it~~~~~~~l~~~~~~~~~~~~~~~i~~~v~~~~~i~~~~l~~~~R~~~~~~aR~iamyl~~~~~~ 402 (450)
T PRK00149 325 RLIAYASLT--GKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTD 402 (450)
T ss_pred HHHHHHHhh--CCCCCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcccChHHHHHHHHHHHhcC
Confidence 876654321 122333333333333221111123456666666666632 112122112 377999999999999
Q ss_pred HHHHHHHHHHHHhhhhhH
Q 017844 308 EIKHEVCHWAAYYVSISF 325 (365)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~ 325 (365)
.+.+++++.+++.+|...
T Consensus 403 ~s~~~Ig~~fg~rdhstV 420 (450)
T PRK00149 403 LSLPEIGRAFGGRDHTTV 420 (450)
T ss_pred CCHHHHHHHcCCCCHhHH
Confidence 999999999998888743
No 83
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.86 E-value=1.9e-20 Score=180.18 Aligned_cols=276 Identities=15% Similarity=0.189 Sum_probs=180.5
Q ss_pred CCCcccc---CHHHHHHHHHHHHc-CCCCe-EEEECCCCCcHHHHHHHHHHHhcCC--CCccceeccccceecCCCccee
Q 017844 11 TLDQVIV---HQDIAQNLKKLVTE-QDCPH-LLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 11 ~~~~iig---~~~~~~~l~~~l~~-~~~~~-lll~Gp~G~GKTtla~~la~~l~~~--~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
+|++++. +..+...+..++.. +...+ ++|||++|+|||+|++++++++... ....+++.+..|
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef---------- 355 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF---------- 355 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH----------
Confidence 7899873 23344455555543 22223 9999999999999999999987432 212222222111
Q ss_pred ccccccccccce-ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhhcC-
Q 017844 84 LELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSA- 159 (365)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~- 159 (365)
+ ++... . .+ ....++.+. ....++|+|||++.+.. ..+..|+.+++....
T Consensus 356 -----------~~el~~a-l--~~-~~~~~f~~~-----------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~ 409 (617)
T PRK14086 356 -----------TNEFINS-I--RD-GKGDSFRRR-----------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA 409 (617)
T ss_pred -----------HHHHHHH-H--Hh-ccHHHHHHH-----------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc
Confidence 0 00000 0 00 001111111 12358999999998843 456788888887644
Q ss_pred ceeEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 017844 160 SCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232 (365)
Q Consensus 160 ~~~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l 232 (365)
+..+|++++... .+.+.|+||+ .++.+.+|+.+.+.++|++.+...++.++++++++|++...+|+|.+...|
T Consensus 410 gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL 489 (617)
T PRK14086 410 NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGAL 489 (617)
T ss_pred CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 356777777654 4678999998 489999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHH-HhccChhHHHHHHHHHHHH-----HHcCCChHH-HHHHHHHHHHHhC
Q 017844 233 ETCRVQQYPFKDNQAIPAMDWEEFVFEIASDI-MQEQSPKRLFQVRGKLYEL-----LLNCVPPVV-VLKRLLYELLKRL 305 (365)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i-~~~~~~~~~~~~~~~l~~l-----~~~~~~~~~-il~~l~~~l~~~~ 305 (365)
+++...+... ...++....+..+.+++..- ....+.+.+.++...+|.+ ...+-.... ..+++++||++.+
T Consensus 490 ~rL~a~a~~~--~~~itl~la~~vL~~~~~~~~~~~it~d~I~~~Va~~f~v~~~dl~s~~R~~~i~~aRqiAMYL~r~l 567 (617)
T PRK14086 490 IRVTAFASLN--RQPVDLGLTEIVLRDLIPEDSAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCREL 567 (617)
T ss_pred HHHHHHHHhh--CCCCCHHHHHHHHHHhhccccCCcCCHHHHHHHHHHHhCCCHHHHhCCCCCcccchHHHHHHHHHHHH
Confidence 9886654321 12233322333332222210 1123566777777777742 222222112 3779999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhH
Q 017844 306 DAEIKHEVCHWAAYYVSISF 325 (365)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~ 325 (365)
.+.+..+|+..++ .+|...
T Consensus 568 t~~Sl~~IG~~Fg-RdHSTV 586 (617)
T PRK14086 568 TDLSLPKIGQQFG-RDHTTV 586 (617)
T ss_pred cCCCHHHHHHHhC-CChhHH
Confidence 9999999999998 888733
No 84
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.86 E-value=9.5e-21 Score=179.69 Aligned_cols=275 Identities=17% Similarity=0.206 Sum_probs=176.8
Q ss_pred CCCccc-cC--HHHHHHHHHHHHc-CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCC--CccceeccccceecCCCccee
Q 017844 11 TLDQVI-VH--QDIAQNLKKLVTE-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 11 ~~~~ii-g~--~~~~~~l~~~l~~-~~-~~~lll~Gp~G~GKTtla~~la~~l~~~~--~~~i~~~~~~~~~~~~~~~~~ 83 (365)
+|++++ |. ..+...++.+... +. ..+++|+||+|+|||++++++++++.... ...+++++..+
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~---------- 177 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF---------- 177 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH----------
Confidence 677854 53 3345566665554 22 23389999999999999999999875432 12222222111
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhhc-Cc
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYS-AS 160 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~-~~ 160 (365)
. -.+... .... ...++.+.+ ...++++|||++.+.. ..+..|+.+++... .+
T Consensus 178 ------~----~~~~~~-~~~~---~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~ 232 (405)
T TIGR00362 178 ------T----NDFVNA-LRNN---KMEEFKEKY-----------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENG 232 (405)
T ss_pred ------H----HHHHHH-HHcC---CHHHHHHHH-----------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC
Confidence 0 000000 0000 011222211 1237999999998753 45677888887643 34
Q ss_pred eeEEEEecCCC----cccHHHhccce---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 161 CRLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 161 ~~~Il~t~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
..+|++++... .+.+.++||+. .+.|++|+.+++..+|++.+...++.++++++++|++...||+|.+.+.++
T Consensus 233 ~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 233 KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALN 312 (405)
T ss_pred CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 56777777544 36678999984 799999999999999999999999999999999999999999999999988
Q ss_pred HHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHH-----HHcCCChHH-HHHHHHHHHHHhCCH
Q 017844 234 TCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEL-----LLNCVPPVV-VLKRLLYELLKRLDA 307 (365)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l-----~~~~~~~~~-il~~l~~~l~~~~~~ 307 (365)
.+...+.. ....++....+..+.+.+..-.+..+.+.+.++....|.+ ...+-.... ..+++++|+.+.+.+
T Consensus 313 ~l~~~a~~--~~~~it~~~~~~~L~~~~~~~~~~it~~~I~~~Va~~~~v~~~~l~~~~r~~~~~~~R~~amyl~~~~~~ 390 (405)
T TIGR00362 313 RLLAYASL--TGKPITLELAKEALKDLLRAKKKEITIENIQEVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTD 390 (405)
T ss_pred HHHHHHHH--hCCCCCHHHHHHHHHHhccccCCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcccchHHHHHHHHHHHHcC
Confidence 87665432 1122333333333332221111223556666666666532 222222222 378999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 017844 308 EIKHEVCHWAAYYVS 322 (365)
Q Consensus 308 ~~~~~~~~~~~~~~~ 322 (365)
.+.+++++.+++.+|
T Consensus 391 ~s~~~ig~~fg~rdH 405 (405)
T TIGR00362 391 LSLPEIGRAFGGRDH 405 (405)
T ss_pred CCHHHHHHHhCCCCC
Confidence 999999999987776
No 85
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1.7e-20 Score=167.44 Aligned_cols=191 Identities=23% Similarity=0.278 Sum_probs=132.5
Q ss_pred CCCccccCHHHHHHHHHHHH----------c-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee
Q 017844 11 TLDQVIVHQDIAQNLKKLVT----------E-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~----------~-----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~ 75 (365)
.+++++|.+.+++.++..+. . +..+|++|+|||||||||+|+++++.+.....
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~------------ 71 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV------------ 71 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc------------
Confidence 35789999999887765431 1 23456999999999999999999997643210
Q ss_pred cCCCcceeccccccccccceecCCCCc----CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--------
Q 017844 76 DAGSRNIDLELTTLSSANHVELSPSDA----GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (365)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-------- 143 (365)
.+.+ .++...+++. -......+++.+... ...|+||||+|.|.
T Consensus 72 ~~~~-------------~~v~~~~~~l~~~~~g~~~~~~~~~~~~a------------~~~VL~IDE~~~L~~~~~~~~~ 126 (261)
T TIGR02881 72 LSKG-------------HLIEVERADLVGEYIGHTAQKTREVIKKA------------LGGVLFIDEAYSLARGGEKDFG 126 (261)
T ss_pred ccCC-------------ceEEecHHHhhhhhccchHHHHHHHHHhc------------cCCEEEEechhhhccCCccchH
Confidence 0000 0111111110 000111122322211 12599999999875
Q ss_pred HHHHHHHHHHHhhhcCceeEEEEecCCC-----cccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844 144 REAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (365)
Q Consensus 144 ~~~~~~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i 217 (365)
.+.++.|++.+++...+..+|+++...+ .+.++++||| ..+.|++++.+++.+++++.+...+..++++++..+
T Consensus 127 ~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l 206 (261)
T TIGR02881 127 KEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL 206 (261)
T ss_pred HHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence 4567889999998776777777655432 3678999999 579999999999999999999999999999999988
Q ss_pred HHH----------cCCCHHHHHHHHHHHHhc
Q 017844 218 AEK----------SNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 218 ~~~----------~~g~lr~ai~~l~~~~~~ 238 (365)
++. +.||.|.+.|+++.+...
T Consensus 207 ~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 207 REHLYKVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 653 359999999999987654
No 86
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.85 E-value=6.8e-20 Score=174.24 Aligned_cols=277 Identities=14% Similarity=0.153 Sum_probs=176.1
Q ss_pred CCCccc-cC--HHHHHHHHHHHHc-CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC--ccceeccccceecCCCcceec
Q 017844 11 TLDQVI-VH--QDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAGSRNIDL 84 (365)
Q Consensus 11 ~~~~ii-g~--~~~~~~l~~~l~~-~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~ 84 (365)
+|++++ |. ..+......+... +...+++||||+|+|||+|++++++++....+ ..+++++..|
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f----------- 171 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF----------- 171 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH-----------
Confidence 688887 43 3444555555543 33345999999999999999999998754322 1222222111
Q ss_pred cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhcC-ce
Q 017844 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SC 161 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~-~~ 161 (365)
..-...... .....++...+. ...++++|||++.+. ...+..|+.+++.... +.
T Consensus 172 ----------~~~~~~~~~---~~~~~~f~~~~~----------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k 228 (440)
T PRK14088 172 ----------LNDLVDSMK---EGKLNEFREKYR----------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK 228 (440)
T ss_pred ----------HHHHHHHHh---cccHHHHHHHHH----------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC
Confidence 000000000 000112211111 134799999999774 3356778888876543 34
Q ss_pred eEEEEecCCC----cccHHHhccce---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844 162 RLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (365)
Q Consensus 162 ~~Il~t~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~ 234 (365)
.+|+++++.. .+.+.++||+. ++.+.+|+.+.+.+++++.+...++.++++++++|++...||+|.+...+..
T Consensus 229 ~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~ 308 (440)
T PRK14088 229 QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIK 308 (440)
T ss_pred eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHH
Confidence 5666666443 36678999985 8999999999999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHh--ccChhHHHHHHHHHHHH-----HHcCCChHH-HHHHHHHHHHHhCC
Q 017844 235 CRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQ--EQSPKRLFQVRGKLYEL-----LLNCVPPVV-VLKRLLYELLKRLD 306 (365)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~--~~~~~~~~~~~~~l~~l-----~~~~~~~~~-il~~l~~~l~~~~~ 306 (365)
+...+... ...++.....+.+.+++..-.. ..+.+.+.++...+|.+ ...+-.... ..+++++++.+.+.
T Consensus 309 l~~~~~~~--~~~it~~~a~~~L~~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~aR~iamyl~r~~~ 386 (440)
T PRK14088 309 LLVYKETT--GEEVDLKEAILLLKDFIKPNRVKAMDPIDELIEIVAKVTGVSREEILSNSRNVKALLARRIGMYVAKNYL 386 (440)
T ss_pred HHHHHHHh--CCCCCHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHcCCcHHHHhCCCCCccccHHHHHHHHHHHHHh
Confidence 76554321 1223333333333333211011 12445556666665532 112222122 37799999999988
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 017844 307 AEIKHEVCHWAAYYVSIS 324 (365)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ 324 (365)
+.+.+++++.++ .+|..
T Consensus 387 ~~s~~~Ig~~fg-r~hst 403 (440)
T PRK14088 387 GSSLRTIAEKFN-RSHPV 403 (440)
T ss_pred CCCHHHHHHHhC-CCHHH
Confidence 889999999997 78773
No 87
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.85 E-value=6.8e-20 Score=175.73 Aligned_cols=222 Identities=24% Similarity=0.392 Sum_probs=133.1
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHc---CCC--CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~---~~~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
+|++||+|++.+++..|++.++.++.|++. +.. ..++|+||+||||||+++++|+++...- .+| .+
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v--------~Ew-~n 78 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEV--------QEW-IN 78 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCee--------EEe-cC
Confidence 799999999999999999999999999975 222 2289999999999999999999873211 122 11
Q ss_pred CCCcceeccccccccccceecCCCCcC-ccc-hhHHHHHHHHHHhcCCCC---CCCCCCceEEEEeCCCCCCHHHHHHHH
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAG-FQD-RYVVQEVIKEMAKNRPID---TKGKRGFKVLVLNEVDKLSREAQHSLR 151 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~---~~~~~~~~vliiDE~~~L~~~~~~~Ll 151 (365)
|.... + ......++..... ... +.. .....++.-.......+. .....+.+||+|||+..+.......|.
T Consensus 79 p~~~~-~---~~~~~~d~~s~~~-~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~ 153 (519)
T PF03215_consen 79 PVSFR-E---SDNQEDDFESDFN-KFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFR 153 (519)
T ss_pred CCCcc-c---ccccccccccccc-ccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHH
Confidence 21100 0 0000000000000 000 000 000111100111111110 012346789999998765433225555
Q ss_pred HHHhhh--cCce-eEEEEecCC---C--------------cccHHHhcc--ceeEEecCCCHHHHHHHHHHHHHHc----
Q 017844 152 RTMEKY--SASC-RLILCCNSS---S--------------KVTEAIRSR--CLNIRINSPTEEQIVKVLEFIAKKE---- 205 (365)
Q Consensus 152 ~~le~~--~~~~-~~Il~t~~~---~--------------~l~~~l~sR--~~~i~~~~~~~~~~~~iL~~~~~~~---- 205 (365)
..|.++ .... .+|++.++. . -+.+.+... +..|.|+|.+..-+.+.|.+++..|
T Consensus 154 ~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 154 EALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 555543 1122 334333311 0 134555553 5689999999999999999999987
Q ss_pred -CC-CCC--HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 206 -GL-QLP--SGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 206 -~~-~i~--~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+. ..+ .+.++.|+..++||+|.||+.||.++.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 32 333 456999999999999999999999988
No 88
>PRK08727 hypothetical protein; Validated
Probab=99.85 E-value=1.7e-19 Score=157.94 Aligned_cols=183 Identities=21% Similarity=0.330 Sum_probs=130.6
Q ss_pred CCCCccccC-HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844 10 KTLDQVIVH-QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (365)
Q Consensus 10 ~~~~~iig~-~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
.+|+++++. ......+.....+.....++|+||+|+|||+++++++..+.......++++.
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~------------------ 77 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL------------------ 77 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH------------------
Confidence 389998754 4444444444433322339999999999999999999876433211111110
Q ss_pred cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhc-CceeEEE
Q 017844 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYS-ASCRLIL 165 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~-~~~~~Il 165 (365)
.+.. . ...+.++.+ .+..+++|||++.+. ...+..++.+++... .+..+|+
T Consensus 78 -----------~~~~--~--~~~~~~~~l-----------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ 131 (233)
T PRK08727 78 -----------QAAA--G--RLRDALEAL-----------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLY 131 (233)
T ss_pred -----------HHhh--h--hHHHHHHHH-----------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 0000 0 011222221 234799999999885 445667788877643 3456888
Q ss_pred EecCCCc----ccHHHhcc---ceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844 166 CCNSSSK----VTEAIRSR---CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (365)
Q Consensus 166 ~t~~~~~----l~~~l~sR---~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~ 236 (365)
+++.+.. +.+.++|| |..+.|++|+.+++.+++++++..+++.++++++++|++.++||+|.+++.|+.+.
T Consensus 132 ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 132 TARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLD 209 (233)
T ss_pred ECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8886553 56999999 77999999999999999999999999999999999999999999999999998765
No 89
>PRK06893 DNA replication initiation factor; Validated
Probab=99.85 E-value=1.2e-19 Score=158.56 Aligned_cols=185 Identities=18% Similarity=0.275 Sum_probs=128.3
Q ss_pred CCCCCCccccCHHHH--HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecc
Q 017844 8 RPKTLDQVIVHQDIA--QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (365)
Q Consensus 8 rP~~~~~iig~~~~~--~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (365)
+|.+|+++++++... ..+.........+.++|+||+|+||||+++++++++........++.
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~---------------- 74 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP---------------- 74 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----------------
Confidence 456999999765432 23333333333344899999999999999999998644322111111
Q ss_pred ccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhcC-cee
Q 017844 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SCR 162 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~-~~~ 162 (365)
...... ...+.++. ..+.++++|||++.+. ...+..|+.+++.... +..
T Consensus 75 -----------~~~~~~------~~~~~~~~-----------~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~ 126 (229)
T PRK06893 75 -----------LSKSQY------FSPAVLEN-----------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKT 126 (229)
T ss_pred -----------HHHhhh------hhHHHHhh-----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCc
Confidence 100000 00111211 1234799999999874 4445678888876543 233
Q ss_pred E-EEEecCCCc----ccHHHhccce---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844 163 L-ILCCNSSSK----VTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (365)
Q Consensus 163 ~-Il~t~~~~~----l~~~l~sR~~---~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~ 234 (365)
+ |++++.... ..+.++||+. .+.+++|+.+++.+++++.+...++.++++++++|++.++||+|.+++.++.
T Consensus 127 illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 127 LLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred EEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 4 455555432 4489999985 8999999999999999999999999999999999999999999999999998
Q ss_pred HH
Q 017844 235 CR 236 (365)
Q Consensus 235 ~~ 236 (365)
+.
T Consensus 207 l~ 208 (229)
T PRK06893 207 LD 208 (229)
T ss_pred HH
Confidence 74
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.83 E-value=3.1e-19 Score=156.29 Aligned_cols=183 Identities=17% Similarity=0.289 Sum_probs=135.6
Q ss_pred CCCCCCccc--cCHHHHHHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844 8 RPKTLDQVI--VHQDIAQNLKKLVTEQ-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (365)
Q Consensus 8 rP~~~~~ii--g~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (365)
+|.+|++++ ++..+...++.+.... ...+++|+||+|+|||++++++++.........+++++..
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~------------ 80 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS------------ 80 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH------------
Confidence 456899988 3577788888887643 3345999999999999999999997644332222211100
Q ss_pred cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCce--e
Q 017844 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC--R 162 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~--~ 162 (365)
...... .....++++|||++.++...+..|+..++....+. .
T Consensus 81 ----------------------------~~~~~~--------~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~ 124 (227)
T PRK08903 81 ----------------------------PLLAFD--------FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGA 124 (227)
T ss_pred ----------------------------hHHHHh--------hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcE
Confidence 000000 01234799999999999888899999997754333 3
Q ss_pred EEEEecCCC---cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844 163 LILCCNSSS---KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (365)
Q Consensus 163 ~Il~t~~~~---~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~ 236 (365)
++++++... .+.+.+.||+ ..+++++|+.++...++.+.+...++.+++++++.+++.+.||+|.+.+.++.+.
T Consensus 125 vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 125 LLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred EEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 455554332 3557888896 6999999999999999999998999999999999999999999999999999865
Q ss_pred hc
Q 017844 237 VQ 238 (365)
Q Consensus 237 ~~ 238 (365)
.+
T Consensus 205 ~~ 206 (227)
T PRK08903 205 RY 206 (227)
T ss_pred HH
Confidence 43
No 91
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.83 E-value=3.5e-19 Score=164.97 Aligned_cols=219 Identities=20% Similarity=0.305 Sum_probs=138.3
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHH-----cCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~-----~~~~~~--lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~ 74 (365)
+|++||+|.+.+++..|+..+..++.|++ ....++ +||+||+||||||.++.+++++.-. -.+|
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~--------~~Ew- 141 (634)
T KOG1970|consen 71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQ--------LIEW- 141 (634)
T ss_pred hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCce--------eeee-
Confidence 69999999999999999999999999998 555554 9999999999999999999987321 1122
Q ss_pred ecCCCcceeccccccccccceecCCCCcC--ccchh-HHHHHHHHHHhcCCC---CCCCCCCceEEEEeCCCCCCH-HHH
Q 017844 75 IDAGSRNIDLELTTLSSANHVELSPSDAG--FQDRY-VVQEVIKEMAKNRPI---DTKGKRGFKVLVLNEVDKLSR-EAQ 147 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~---~~~~~~~~~vliiDE~~~L~~-~~~ 147 (365)
.+|... .. +.+..-.....+ ..... ..+.++........+ +......+++|+|||+..... +..
T Consensus 142 ~Npi~~--~~-------~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~ 212 (634)
T KOG1970|consen 142 SNPINL--KE-------PENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDS 212 (634)
T ss_pred cCCccc--cc-------cccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhH
Confidence 111110 00 000000000001 00000 112222222111111 112345668999999855432 233
Q ss_pred HHHHHHHhhh---cCceeEEEEecCCC--------cccHH--HhccceeEEecCCCHHHHHHHHHHHHHHcCCCCC----
Q 017844 148 HSLRRTMEKY---SASCRLILCCNSSS--------KVTEA--IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP---- 210 (365)
Q Consensus 148 ~~Ll~~le~~---~~~~~~Il~t~~~~--------~l~~~--l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~---- 210 (365)
..+...|..+ +....+|++|+... ..+.. ..-|...|.|+|....-+.+.|+++|..++...+
T Consensus 213 ~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~ 292 (634)
T KOG1970|consen 213 ETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKV 292 (634)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence 3444444433 22334555555433 12233 3445579999999999999999999998877666
Q ss_pred --HHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844 211 --SGFATRLAEKSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 211 --~~~~~~i~~~~~g~lr~ai~~l~~~~~~ 238 (365)
...++.++..++||+|.||+.||..+..
T Consensus 293 ~~~~~v~~i~~~s~GDIRsAInsLQlsssk 322 (634)
T KOG1970|consen 293 PDTAEVELICQGSGGDIRSAINSLQLSSSK 322 (634)
T ss_pred chhHHHHHHHHhcCccHHHHHhHhhhhccc
Confidence 6779999999999999999999988543
No 92
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.83 E-value=7.7e-20 Score=154.54 Aligned_cols=183 Identities=25% Similarity=0.370 Sum_probs=126.9
Q ss_pred CCCCCCccccCHHHHHHHHHHH---Hc----C--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLV---TE----Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l---~~----~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~ 78 (365)
+--+|+|++||+++++..+-.. ++ | ...++|||||||||||.+|+++|++..-|-
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~---------------- 179 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL---------------- 179 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----------------
Confidence 3458999999999987665544 32 2 234599999999999999999998652111
Q ss_pred CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC------------HHH
Q 017844 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------REA 146 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------------~~~ 146 (365)
-...+...+. ...| .....+.++....... .+.|++|||+|.+. .+.
T Consensus 180 --------l~vkat~liG---ehVG-dgar~Ihely~rA~~~---------aPcivFiDE~DAiaLdRryQelRGDVsEi 238 (368)
T COG1223 180 --------LLVKATELIG---EHVG-DGARRIHELYERARKA---------APCIVFIDELDAIALDRRYQELRGDVSEI 238 (368)
T ss_pred --------EEechHHHHH---HHhh-hHHHHHHHHHHHHHhc---------CCeEEEehhhhhhhhhhhHHHhcccHHHH
Confidence 0011111111 0001 1112344555444433 34799999998763 346
Q ss_pred HHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 017844 147 QHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR 223 (365)
Q Consensus 147 ~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g 223 (365)
.|+||.-|+... ..+.+|.+||+++-++++++||+. .|+|.-|+.+++..+++..+++-.+.++.. ++.++..+.|
T Consensus 239 VNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g 317 (368)
T COG1223 239 VNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKG 317 (368)
T ss_pred HHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCC
Confidence 678888887543 357899999999999999999996 899999999999999999998877766655 7777777665
Q ss_pred -CHHHH
Q 017844 224 -SLRRA 228 (365)
Q Consensus 224 -~lr~a 228 (365)
+-|+.
T Consensus 318 ~SgRdi 323 (368)
T COG1223 318 MSGRDI 323 (368)
T ss_pred CCchhH
Confidence 33433
No 93
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.81 E-value=1.1e-18 Score=172.23 Aligned_cols=216 Identities=22% Similarity=0.310 Sum_probs=143.2
Q ss_pred ccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC-------CCccceeccccceec
Q 017844 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-------GAEKVKVENKTWKID 76 (365)
Q Consensus 4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-------~~~~i~~~~~~~~~~ 76 (365)
.+.+||++|++++|++..++.+...+..+...+++|+|||||||||+|+.+.+..... ....+.++|..+..
T Consensus 145 ~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~- 223 (615)
T TIGR02903 145 QSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW- 223 (615)
T ss_pred hhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-
Confidence 5679999999999999999988888876766679999999999999999998754221 11122333221100
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcC---CC-CCCCCCCceEEEEeCCCCCCHHHHHHHHH
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR---PI-DTKGKRGFKVLVLNEVDKLSREAQHSLRR 152 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-~~~~~~~~~vliiDE~~~L~~~~~~~Ll~ 152 (365)
+ ...+ ...-.+..........-+.+.... +. .........+++|||++.|+...++.|++
T Consensus 224 ------d--------~~~i--~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 224 ------D--------PREV--TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLK 287 (615)
T ss_pred ------C--------HHHH--hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHH
Confidence 0 0000 000000000000000001111100 00 00011223599999999999999999999
Q ss_pred HHhhhc--------------------------CceeEEEE--ec-CCCcccHHHhccceeEEecCCCHHHHHHHHHHHHH
Q 017844 153 TMEKYS--------------------------ASCRLILC--CN-SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK 203 (365)
Q Consensus 153 ~le~~~--------------------------~~~~~Il~--t~-~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~ 203 (365)
.|++.. ....++++ |+ ++..+.++++|||..+.|++++.+++..++++.+.
T Consensus 288 ~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 288 VLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred HHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 998631 11223443 33 45578899999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 204 KEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 204 ~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.+++++++.|++.+. +.|++++.|+.++.
T Consensus 368 ~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~~ 400 (615)
T TIGR02903 368 KINVHLAAGVEELIARYTI-EGRKAVNILADVYG 400 (615)
T ss_pred HcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 8888899999999998754 78999999986643
No 94
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.81 E-value=1.5e-18 Score=151.99 Aligned_cols=185 Identities=19% Similarity=0.330 Sum_probs=134.5
Q ss_pred CCCCCcccc--CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844 9 PKTLDQVIV--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (365)
Q Consensus 9 P~~~~~iig--~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (365)
|.+|+++++ +..+++.++.++......+++|+||+|||||++++.+++.........+++++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~------------- 77 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL------------- 77 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH-------------
Confidence 457888873 67788999998766555669999999999999999999876433222222222111
Q ss_pred cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhhc-CceeE
Q 017844 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA--QHSLRRTMEKYS-ASCRL 163 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~--~~~Ll~~le~~~-~~~~~ 163 (365)
. . ...+.+.. ..+.++++|||++.++... ++.|...++... .+..+
T Consensus 78 ----------------~--~--~~~~~~~~-----------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~i 126 (226)
T TIGR03420 78 ----------------A--Q--ADPEVLEG-----------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRL 126 (226)
T ss_pred ----------------H--H--hHHHHHhh-----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeE
Confidence 0 0 00111111 1233699999999987643 778888877642 23467
Q ss_pred EEEecCCC-c--cc-HHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844 164 ILCCNSSS-K--VT-EAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (365)
Q Consensus 164 Il~t~~~~-~--l~-~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~ 236 (365)
|++++... . .. +.+.+|+ ..+.+++++.++...+++..+.+.++.+++++++.|++.++||+|.+.+.++.+.
T Consensus 127 Iits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 127 LIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALD 206 (226)
T ss_pred EEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 77776543 2 22 7788887 4899999999999999999888889999999999999999999999999988754
Q ss_pred h
Q 017844 237 V 237 (365)
Q Consensus 237 ~ 237 (365)
.
T Consensus 207 ~ 207 (226)
T TIGR03420 207 R 207 (226)
T ss_pred H
Confidence 3
No 95
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=1.7e-18 Score=155.53 Aligned_cols=189 Identities=18% Similarity=0.284 Sum_probs=130.0
Q ss_pred CccccCHHHHHHHHHHHH--------c-------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 13 DQVIVHQDIAQNLKKLVT--------E-------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~--------~-------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
++++|.+.+++.+++++. . +...|++|+|||||||||+|+++++.+...... +
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~------------~ 90 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI------------K 90 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC------------C
Confidence 368999999887776542 0 123459999999999999999999976422110 0
Q ss_pred CCcceeccccccccccceecCCCC-----cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC---------C
Q 017844 78 GSRNIDLELTTLSSANHVELSPSD-----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------S 143 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L---------~ 143 (365)
. ..++.+...+ .+... ...++.++. ....|+||||++.+ .
T Consensus 91 ~-------------~~~~~v~~~~l~~~~~g~~~-~~~~~~l~~------------a~ggVLfIDE~~~l~~~~~~~~~~ 144 (287)
T CHL00181 91 K-------------GHLLTVTRDDLVGQYIGHTA-PKTKEVLKK------------AMGGVLFIDEAYYLYKPDNERDYG 144 (287)
T ss_pred C-------------CceEEecHHHHHHHHhccch-HHHHHHHHH------------ccCCEEEEEccchhccCCCccchH
Confidence 0 0011111110 01000 011222221 12269999999986 4
Q ss_pred HHHHHHHHHHHhhhcCceeEEEEecCCC-----cccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844 144 REAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (365)
Q Consensus 144 ~~~~~~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i 217 (365)
.++++.|++.|++...++++|++++... ...|+++|||. .+.|++++.+++.+++...+.+.+..+++++...+
T Consensus 145 ~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L 224 (287)
T CHL00181 145 SEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKAL 224 (287)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHH
Confidence 5678899999998777777777765322 23589999996 89999999999999999999999999999887766
Q ss_pred HHH--------cCCCHHHHHHHHHHHHhcC
Q 017844 218 AEK--------SNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 218 ~~~--------~~g~lr~ai~~l~~~~~~~ 239 (365)
... .-||.|.+.++++.+....
T Consensus 225 ~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 225 LDYIKKRMEQPLFANARSVRNALDRARMRQ 254 (287)
T ss_pred HHHHHHhCCCCCCccHHHHHHHHHHHHHHH
Confidence 663 3489999999999876553
No 96
>PRK06620 hypothetical protein; Validated
Probab=99.80 E-value=3e-18 Score=147.57 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=119.4
Q ss_pred CCCccc---cCHHHHHHHHHHHHc-CCC---CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 11 TLDQVI---VHQDIAQNLKKLVTE-QDC---PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 11 ~~~~ii---g~~~~~~~l~~~l~~-~~~---~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
+|++++ .+..+...++.+.+. +.. +.++|+||+|+||||+++++++.... .+
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----------~~---------- 72 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----------YI---------- 72 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----------EE----------
Confidence 566665 356788888888763 222 33999999999999999998774210 00
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC-cee
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-SCR 162 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~-~~~ 162 (365)
.... .. ..+ . ....++++|||+|.+... .|+.+++.... +..
T Consensus 73 --------------~~~~-~~-----~~~----~----------~~~~d~lliDdi~~~~~~---~lf~l~N~~~e~g~~ 115 (214)
T PRK06620 73 --------------IKDI-FF-----NEE----I----------LEKYNAFIIEDIENWQEP---ALLHIFNIINEKQKY 115 (214)
T ss_pred --------------cchh-hh-----chh----H----------HhcCCEEEEeccccchHH---HHHHHHHHHHhcCCE
Confidence 0000 00 001 0 012378999999977433 44444443322 235
Q ss_pred EEEEecCCC---cccHHHhccce---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844 163 LILCCNSSS---KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (365)
Q Consensus 163 ~Il~t~~~~---~l~~~l~sR~~---~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~ 236 (365)
++++++.+. .+ +.++||+. ++.+++|+.+++..++++.+...|+.++++++++|++.++||+|.+++.|+.+.
T Consensus 116 ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 116 LLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred EEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666665444 25 89999997 999999999999999999999899999999999999999999999999999865
Q ss_pred h
Q 017844 237 V 237 (365)
Q Consensus 237 ~ 237 (365)
.
T Consensus 195 ~ 195 (214)
T PRK06620 195 Y 195 (214)
T ss_pred H
Confidence 3
No 97
>PRK05642 DNA replication initiation factor; Validated
Probab=99.80 E-value=6.3e-18 Score=148.01 Aligned_cols=184 Identities=16% Similarity=0.281 Sum_probs=129.6
Q ss_pred CCCCccc-c-CHHHHHHHHHHHHc-CC--CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844 10 KTLDQVI-V-HQDIAQNLKKLVTE-QD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (365)
Q Consensus 10 ~~~~~ii-g-~~~~~~~l~~~l~~-~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (365)
-+|++++ | +..+.+.++.+... +. .++++|+||+|+|||+|++++++++.......++++...+
T Consensus 16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~----------- 84 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL----------- 84 (234)
T ss_pred ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH-----------
Confidence 3799987 3 34444555555432 11 2348999999999999999999876433222222211111
Q ss_pred cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhcC-ce
Q 017844 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SC 161 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~-~~ 161 (365)
.. . ..++++.+ .+.++++|||++.+. +..+..|+.+++.... +.
T Consensus 85 ----------~~--------~----~~~~~~~~-----------~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~ 131 (234)
T PRK05642 85 ----------LD--------R----GPELLDNL-----------EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGR 131 (234)
T ss_pred ----------Hh--------h----hHHHHHhh-----------hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCC
Confidence 00 0 01222222 123699999999774 3556778999887544 45
Q ss_pred eEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844 162 RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (365)
Q Consensus 162 ~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~ 234 (365)
.+|++++... ...+.++||+ .++.+.+|+.+++.++++..+...|+.++++++++|++.++||+|.+++.++.
T Consensus 132 ~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 132 RLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred EEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6677766543 2468999999 78999999999999999988888899999999999999999999999999987
Q ss_pred HHh
Q 017844 235 CRV 237 (365)
Q Consensus 235 ~~~ 237 (365)
+..
T Consensus 212 l~~ 214 (234)
T PRK05642 212 LDQ 214 (234)
T ss_pred HHH
Confidence 753
No 98
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.80 E-value=7.1e-18 Score=145.96 Aligned_cols=194 Identities=21% Similarity=0.351 Sum_probs=129.5
Q ss_pred CCCccc-c--CHHHHHHHHHHHHcCC--CCeEEEECCCCCcHHHHHHHHHHHhcC--CCCccceeccccceecCCCccee
Q 017844 11 TLDQVI-V--HQDIAQNLKKLVTEQD--CPHLLFYGPPGSGKKTLIMALLRQVFG--PGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 11 ~~~~ii-g--~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKTtla~~la~~l~~--~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
+|+.++ | ++.+....+....... ..+++|+||+|+|||+|++++++++.. +....++++...|
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f---------- 75 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF---------- 75 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH----------
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH----------
Confidence 788886 4 5666777766665432 234999999999999999999998753 2222223332222
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhhc-Cc
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHSLRRTMEKYS-AS 160 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~--~~~~Ll~~le~~~-~~ 160 (365)
..-...... .....++...+ ...++++||+++.+... .+..|+.+++... .+
T Consensus 76 -----------~~~~~~~~~---~~~~~~~~~~~-----------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~ 130 (219)
T PF00308_consen 76 -----------IREFADALR---DGEIEEFKDRL-----------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG 130 (219)
T ss_dssp -----------HHHHHHHHH---TTSHHHHHHHH-----------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT
T ss_pred -----------HHHHHHHHH---cccchhhhhhh-----------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC
Confidence 000000000 00011222221 23489999999998754 4888999988753 34
Q ss_pred eeEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 161 CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 161 ~~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
..+|++++.+. .+.+.++||+ .++.+.+|+.++..+++++.+...|+.++++++++|++...+|+|.+...|+
T Consensus 131 k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 131 KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 57888886554 3678899997 4899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC
Q 017844 234 TCRVQQ 239 (365)
Q Consensus 234 ~~~~~~ 239 (365)
++.+++
T Consensus 211 ~l~~~~ 216 (219)
T PF00308_consen 211 RLDAYA 216 (219)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887653
No 99
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.79 E-value=6.7e-18 Score=165.20 Aligned_cols=216 Identities=13% Similarity=0.184 Sum_probs=139.2
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHHc---CCCC-e-EEEECCCCCcHHHHHHHHHHHhcCC-------CCccceecccc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE---QDCP-H-LLFYGPPGSGKKTLIMALLRQVFGP-------GAEKVKVENKT 72 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~~---~~~~-~-lll~Gp~G~GKTtla~~la~~l~~~-------~~~~i~~~~~~ 72 (365)
..|.| +.+.|.++..+.|...+.. +..+ + ++|+|+||||||++++.+++++... ....++++|..
T Consensus 750 ~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 750 LDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred cccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 34666 5677887777666665542 3333 4 5799999999999999998877421 12335566643
Q ss_pred ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHH
Q 017844 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152 (365)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~ 152 (365)
+ ..|......+ . .......+ ..+.. ..+.+..+.....- ......||||||+|.|....+..|+.
T Consensus 827 L-stp~sIYqvI-----~-qqL~g~~P-~~Gls----S~evLerLF~~L~k---~~r~v~IIILDEID~L~kK~QDVLYn 891 (1164)
T PTZ00112 827 V-VHPNAAYQVL-----Y-KQLFNKKP-PNALN----SFKILDRLFNQNKK---DNRNVSILIIDEIDYLITKTQKVLFT 891 (1164)
T ss_pred c-CCHHHHHHHH-----H-HHHcCCCC-Ccccc----HHHHHHHHHhhhhc---ccccceEEEeehHhhhCccHHHHHHH
Confidence 3 1111100000 0 00000011 11111 11222222221100 12234699999999998777778887
Q ss_pred HHhhh---cCceeEEEEecCC---CcccHHHhccce--eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---Hc
Q 017844 153 TMEKY---SASCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE---KS 221 (365)
Q Consensus 153 ~le~~---~~~~~~Il~t~~~---~~l~~~l~sR~~--~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~---~~ 221 (365)
+++.+ ...+.+|+++|.. +.+.+.++||+. .+.|+|++.+++.+||..++......+++++++.+|+ ..
T Consensus 892 LFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~ 971 (1164)
T PTZ00112 892 LFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV 971 (1164)
T ss_pred HHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc
Confidence 87754 2346677778763 367789999986 5999999999999999999886555689999999998 66
Q ss_pred CCCHHHHHHHHHHHHhc
Q 017844 222 NRSLRRAILSFETCRVQ 238 (365)
Q Consensus 222 ~g~lr~ai~~l~~~~~~ 238 (365)
.||+|+|+.+|..++..
T Consensus 972 SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 972 SGDIRKALQICRKAFEN 988 (1164)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 79999999999988754
No 100
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.78 E-value=3.2e-17 Score=138.75 Aligned_cols=182 Identities=12% Similarity=0.122 Sum_probs=136.6
Q ss_pred HHHHHHHHHcCCCCe-EEEECCCC-CcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCC
Q 017844 22 AQNLKKLVTEQDCPH-LLFYGPPG-SGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~-lll~Gp~G-~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (365)
...+...++.++..| ++|.|.++ +||..++..+++.+.|... ....+++...+.+
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i-----------------------~~~~HPD~~~I~p 58 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSI-----------------------PLENNPDYHFIAR 58 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCc-----------------------ccCCCCCEEEEec
Confidence 356788899999999 99999998 9999999999987766421 0111122222222
Q ss_pred CC-----cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCccc
Q 017844 100 SD-----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174 (365)
Q Consensus 100 ~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~ 174 (365)
+. ........+|++.+.+.... ..++++|++|++++.|+.++.|+||++|||||.++.||++|+++..++
T Consensus 59 e~~~~~~~~~I~IdqIReL~~~l~~~p-----~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LL 133 (263)
T PRK06581 59 ETSATSNAKNISIEQIRKLQDFLSKTS-----AISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASII 133 (263)
T ss_pred cccccccCCcccHHHHHHHHHHHhhCc-----ccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCc
Confidence 21 11223345777666554433 357889999999999999999999999999999999999999999999
Q ss_pred HHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (365)
Q Consensus 175 ~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~ 234 (365)
+|++|||+.+.|+.|......++....+.. ..+...++.|.+...-|........+.
T Consensus 134 pTIrSRCq~i~~~~p~~~~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~~ 190 (263)
T PRK06581 134 STIRSRCFKINVRSSILHAYNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDFIDN 190 (263)
T ss_pred hhHhhceEEEeCCCCCHHHHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999999999998888877765433 234566888888777666665555554
No 101
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.78 E-value=1.3e-17 Score=149.89 Aligned_cols=193 Identities=17% Similarity=0.267 Sum_probs=131.2
Q ss_pred ccccCHHHHHHHHHHHH----------cC-----CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844 14 QVIVHQDIAQNLKKLVT----------EQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (365)
Q Consensus 14 ~iig~~~~~~~l~~~l~----------~~-----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~ 78 (365)
+++|.+.+++.+..++. .| ...|++|+||||||||++|+++++.+....... .+ .+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~---~~-~~----- 93 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVR---KG-HL----- 93 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc---cc-eE-----
Confidence 58999888887766532 11 112599999999999999999999764322100 00 00
Q ss_pred CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC---------CHHHHHH
Q 017844 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHS 149 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L---------~~~~~~~ 149 (365)
..+ +....+. .-.+ .....+++.++.. ...+++|||++.| ..+.++.
T Consensus 94 ---v~v-----~~~~l~~---~~~g-~~~~~~~~~~~~a------------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~ 149 (284)
T TIGR02880 94 ---VSV-----TRDDLVG---QYIG-HTAPKTKEILKRA------------MGGVLFIDEAYYLYRPDNERDYGQEAIEI 149 (284)
T ss_pred ---EEe-----cHHHHhH---hhcc-cchHHHHHHHHHc------------cCcEEEEechhhhccCCCccchHHHHHHH
Confidence 000 0000000 0001 1111122222221 1269999999977 3567789
Q ss_pred HHHHHhhhcCceeEEEEecCCC-----cccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---
Q 017844 150 LRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK--- 220 (365)
Q Consensus 150 Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~--- 220 (365)
|++.|++...++++|++++... .+.++++|||. .++|++++.+++..++...+.+.+..+++++...+...
T Consensus 150 Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~ 229 (284)
T TIGR02880 150 LLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIAL 229 (284)
T ss_pred HHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHH
Confidence 9999998776777777665432 24689999995 89999999999999999999998889999999888775
Q ss_pred -----cCCCHHHHHHHHHHHHhcC
Q 017844 221 -----SNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 221 -----~~g~lr~ai~~l~~~~~~~ 239 (365)
+.||.|.+.|.++.+....
T Consensus 230 ~~~~~~~GN~R~lrn~ve~~~~~~ 253 (284)
T TIGR02880 230 RRTQPHFANARSIRNAIDRARLRQ 253 (284)
T ss_pred hCCCCCCChHHHHHHHHHHHHHHH
Confidence 5699999999999876654
No 102
>PRK09087 hypothetical protein; Validated
Probab=99.77 E-value=1.1e-17 Score=145.20 Aligned_cols=172 Identities=14% Similarity=0.186 Sum_probs=124.7
Q ss_pred CCCcccc---CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844 11 TLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (365)
Q Consensus 11 ~~~~iig---~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (365)
+|++++. +..+...+..+. ....+.++|+||+|+||||++++++... +..+++..
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~---------------- 76 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS-----DALLIHPN---------------- 76 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc-----CCEEecHH----------------
Confidence 7999884 555667666654 2223449999999999999999988742 10011100
Q ss_pred ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC-ceeEEEE
Q 017844 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-SCRLILC 166 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~-~~~~Il~ 166 (365)
+. ..+.+..+ ...+++|||++.+. ..+..|+.+++.... +..+|++
T Consensus 77 -------------~~-------~~~~~~~~------------~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilit 123 (226)
T PRK09087 77 -------------EI-------GSDAANAA------------AEGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMT 123 (226)
T ss_pred -------------Hc-------chHHHHhh------------hcCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEE
Confidence 00 00111111 11589999999874 335668888876544 4566777
Q ss_pred ecCCCc----ccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 167 CNSSSK----VTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 167 t~~~~~----l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
++.+.. ..+.++||+ .++++.+|+.+++.+++++.++..++.++++++++|++.+.||+|.++..++.+..
T Consensus 124 s~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~ 201 (226)
T PRK09087 124 SRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDR 201 (226)
T ss_pred CCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 765442 468899999 79999999999999999999999999999999999999999999999998777643
No 103
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.77 E-value=2.1e-17 Score=167.16 Aligned_cols=204 Identities=18% Similarity=0.219 Sum_probs=145.5
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
.++++.||.++++++|+++.+..+...+.....++++|+||||+|||++++.+|+.+.......... +
T Consensus 171 ~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~-~----------- 238 (731)
T TIGR02639 171 DLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK-N----------- 238 (731)
T ss_pred hHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc-C-----------
Confidence 3567889999999999999999888888887777899999999999999999999874332111000 0
Q ss_pred eeccccccccccceecCCCC------cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------HHH
Q 017844 82 IDLELTTLSSANHVELSPSD------AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REA 146 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------~~~ 146 (365)
...+.+.... ........++++++.+.. ..+.|+||||+|.+. .++
T Consensus 239 ----------~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~---------~~~~ILfiDEih~l~~~g~~~~~~~~~ 299 (731)
T TIGR02639 239 ----------AKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK---------EPNAILFIDEIHTIVGAGATSGGSMDA 299 (731)
T ss_pred ----------CeEEEecHHHHhhhccccchHHHHHHHHHHHHhc---------cCCeEEEEecHHHHhccCCCCCccHHH
Confidence 0011111110 001111133444444322 134799999999884 234
Q ss_pred HHHHHHHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHH
Q 017844 147 QHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRL 217 (365)
Q Consensus 147 ~~~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i 217 (365)
++.|...++. ..+.+|.+||..+ ..++++.+||+.+.+++|+.++..++|+..... .++.++++++..+
T Consensus 300 ~~~L~~~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~ 377 (731)
T TIGR02639 300 SNLLKPALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAA 377 (731)
T ss_pred HHHHHHHHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHH
Confidence 6667777763 4677888888632 468899999999999999999999999977654 4678999999999
Q ss_pred HHHcCC------CHHHHHHHHHHHHhc
Q 017844 218 AEKSNR------SLRRAILSFETCRVQ 238 (365)
Q Consensus 218 ~~~~~g------~lr~ai~~l~~~~~~ 238 (365)
++.+.+ -+++|+.+++.++..
T Consensus 378 ~~ls~ryi~~r~~P~kai~lld~a~a~ 404 (731)
T TIGR02639 378 VELSARYINDRFLPDKAIDVIDEAGAS 404 (731)
T ss_pred HHhhhcccccccCCHHHHHHHHHhhhh
Confidence 998754 378899999977654
No 104
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.2e-17 Score=146.04 Aligned_cols=180 Identities=21% Similarity=0.324 Sum_probs=129.1
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
++-.-.+++++-|-++.++.+++.+.- | ..|. +|||||||||||.+|+++|++..+ ..+.+.+.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A---tFIrvvgS 219 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA---TFIRVVGS 219 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc---eEEEeccH
Confidence 444445899999999999999998852 2 2233 999999999999999999986422 12222221
Q ss_pred cceecCCCcceecccccccccccee-cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC--------
Q 017844 72 TWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-------- 142 (365)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L-------- 142 (365)
++ +. |.. .....+++++..... ..+.|+||||+|.+
T Consensus 220 El---------------------VqKYiG-----EGaRlVRelF~lAre---------kaPsIIFiDEIDAIg~kR~d~~ 264 (406)
T COG1222 220 EL---------------------VQKYIG-----EGARLVRELFELARE---------KAPSIIFIDEIDAIGAKRFDSG 264 (406)
T ss_pred HH---------------------HHHHhc-----cchHHHHHHHHHHhh---------cCCeEEEEechhhhhcccccCC
Confidence 11 11 111 112246676665443 34589999999987
Q ss_pred ---CHHHHHHHHHHHhh-----hcCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844 143 ---SREAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (365)
Q Consensus 143 ---~~~~~~~Ll~~le~-----~~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~ 211 (365)
+.+.|..++++|.+ +..++++|++||.++-++|++.+-. ..|+|+.|+.+...+|++-+..+-++. ++
T Consensus 265 t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~d 343 (406)
T COG1222 265 TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DD 343 (406)
T ss_pred CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cC
Confidence 34678888888875 4578999999999999999998754 379999999999999999888765543 23
Q ss_pred HHHHHHHHHcCC
Q 017844 212 GFATRLAEKSNR 223 (365)
Q Consensus 212 ~~~~~i~~~~~g 223 (365)
-.++.+++.++|
T Consensus 344 vd~e~la~~~~g 355 (406)
T COG1222 344 VDLELLARLTEG 355 (406)
T ss_pred cCHHHHHHhcCC
Confidence 347777877665
No 105
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.76 E-value=1.6e-16 Score=149.25 Aligned_cols=221 Identities=18% Similarity=0.234 Sum_probs=132.8
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCC------Cccceecccc
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPG------AEKVKVENKT 72 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~------~~~i~~~~~~ 72 (365)
+...|.|. +++|++..++.|..++.. +..++++|+||||+|||++++.+++.+.... ...++++|..
T Consensus 8 l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 8 LEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 34678885 678999888877777653 3444599999999999999999998774321 1223333322
Q ss_pred ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH---HHH
Q 017844 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA---QHS 149 (365)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~---~~~ 149 (365)
. .++..-...+. ..+.. ........+.........+.+.+.. .+++.|++|||+|.+.... ...
T Consensus 85 ~-~~~~~~~~~i~-~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlvIDE~d~L~~~~~~~L~~ 151 (365)
T TIGR02928 85 L-DTLYQVLVELA-NQLRG---SGEEVPTTGLSTSEVFRRLYKELNE--------RGDSLIIVLDEIDYLVGDDDDLLYQ 151 (365)
T ss_pred C-CCHHHHHHHHH-HHHhh---cCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEECchhhhccCCcHHHHh
Confidence 1 00000000000 00000 0000000111111111222222211 2345799999999995322 233
Q ss_pred HHHH--Hhhhc-CceeEEEEecCCC---cccHHHhccce--eEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH
Q 017844 150 LRRT--MEKYS-ASCRLILCCNSSS---KVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAE 219 (365)
Q Consensus 150 Ll~~--le~~~-~~~~~Il~t~~~~---~l~~~l~sR~~--~i~~~~~~~~~~~~iL~~~~~~--~~~~i~~~~~~~i~~ 219 (365)
|++. ..+.+ .++.+|+++|.+. .+.+.+.+|+. .+.|++++.+++.++++.++.. .+..+++++++.+++
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 231 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAA 231 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHH
Confidence 3333 12222 4678899998875 57788889984 7999999999999999998863 233578888777655
Q ss_pred ---HcCCCHHHHHHHHHHHHhcC
Q 017844 220 ---KSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 220 ---~~~g~lr~ai~~l~~~~~~~ 239 (365)
.+.||+|.++++++.++..+
T Consensus 232 ~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 232 LAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Confidence 45799999999999876543
No 106
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.75 E-value=5.8e-16 Score=146.90 Aligned_cols=211 Identities=15% Similarity=0.198 Sum_probs=132.4
Q ss_pred CccccCHHHHHHHHHHHH----cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCC--CccceeccccceecCCCcceeccc
Q 017844 13 DQVIVHQDIAQNLKKLVT----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGSRNIDLEL 86 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~----~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~ 86 (365)
+.++|.+...+.+...+. ++..++++|+||||+|||++++.+++.+.... ...+++++... .++..-...+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~-~~~~~~~~~i-- 106 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID-RTRYAIFSEI-- 106 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC-CCHHHHHHHH--
Confidence 457888887777776653 33445599999999999999999998775432 33344444322 0000000000
Q ss_pred cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC----HHHHHHHHHHHhhhcC-ce
Q 017844 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLRRTMEKYSA-SC 161 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~----~~~~~~Ll~~le~~~~-~~ 161 (365)
.. ..........+. ...+.+..+..... ..+++.||+|||+|.+. .+....|++.+++.+. ++
T Consensus 107 --~~--~l~~~~~~~~~~----~~~~~~~~~~~~l~----~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v 174 (394)
T PRK00411 107 --AR--QLFGHPPPSSGL----SFDELFDKIAEYLD----ERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARI 174 (394)
T ss_pred --HH--HhcCCCCCCCCC----CHHHHHHHHHHHHH----hcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeE
Confidence 00 000000000111 12222222221111 12345799999999885 3445556666555433 56
Q ss_pred eEEEEecCCC---cccHHHhccc--eeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---CCCHHHHHHH
Q 017844 162 RLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS---NRSLRRAILS 231 (365)
Q Consensus 162 ~~Il~t~~~~---~l~~~l~sR~--~~i~~~~~~~~~~~~iL~~~~~~~--~~~i~~~~~~~i~~~~---~g~lr~ai~~ 231 (365)
.+|++++... .+.+.+.+|+ ..+.|++++.+++.++++.++... ...+++++++.+++.+ .||+|.|+++
T Consensus 175 ~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~l 254 (394)
T PRK00411 175 GVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDL 254 (394)
T ss_pred EEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHH
Confidence 7888888764 4667788887 478999999999999999988643 3368899999999877 8999999999
Q ss_pred HHHHHhc
Q 017844 232 FETCRVQ 238 (365)
Q Consensus 232 l~~~~~~ 238 (365)
+..++..
T Consensus 255 l~~a~~~ 261 (394)
T PRK00411 255 LRRAGLI 261 (394)
T ss_pred HHHHHHH
Confidence 9876544
No 107
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.74 E-value=5.9e-17 Score=165.06 Aligned_cols=205 Identities=17% Similarity=0.237 Sum_probs=144.7
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~ 82 (365)
.+++.||.++++++|+++.++.+...+.++..++.+|+||||||||++++.+++.+...... ..+.+
T Consensus 177 L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~-~~l~~------------ 243 (852)
T TIGR03345 177 LTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP-PALRN------------ 243 (852)
T ss_pred HHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCC-ccccC------------
Confidence 45678999999999999999988888888887889999999999999999999987432211 00000
Q ss_pred eccccccccccceecCCC------CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------HHHH
Q 017844 83 DLELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQH 148 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------~~~~ 148 (365)
...+.+... .....-...++++++.+.. .+...|+||||+|.+.. ++.+
T Consensus 244 ---------~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~--------~~~~~ILfIDEih~l~~~g~~~~~~d~~n 306 (852)
T TIGR03345 244 ---------VRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA--------SPQPIILFIDEAHTLIGAGGQAGQGDAAN 306 (852)
T ss_pred ---------CeEEEeehhhhhcccccchHHHHHHHHHHHHHHh--------cCCCeEEEEeChHHhccCCCccccccHHH
Confidence 111111111 1111111234455555432 12347999999999853 2234
Q ss_pred HHHHHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 017844 149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE 219 (365)
Q Consensus 149 ~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~ 219 (365)
.|...++. +...+|.+|+..+ ..++++.+||+.|.+++|+.++...+|+..... .++.++++++..++.
T Consensus 307 ~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ 384 (852)
T TIGR03345 307 LLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVE 384 (852)
T ss_pred HhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHH
Confidence 56666653 4677888887642 478999999999999999999999997655542 468899999999999
Q ss_pred HcCC------CHHHHHHHHHHHHhcC
Q 017844 220 KSNR------SLRRAILSFETCRVQQ 239 (365)
Q Consensus 220 ~~~g------~lr~ai~~l~~~~~~~ 239 (365)
.+.+ -+.+|+.+|+.++...
T Consensus 385 ls~ryi~~r~LPDKAIdlldea~a~~ 410 (852)
T TIGR03345 385 LSHRYIPGRQLPDKAVSLLDTACARV 410 (852)
T ss_pred HcccccccccCccHHHHHHHHHHHHH
Confidence 8864 3578999999876543
No 108
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.70 E-value=5e-16 Score=150.90 Aligned_cols=193 Identities=19% Similarity=0.290 Sum_probs=126.2
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHH-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~-----------~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~ 72 (365)
+.....+|++++|+++++..++.++. ....+. ++|+||||||||++++++|++...+. +.+++..
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~---~~i~~~~ 123 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF---FSISGSD 123 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe---eeccHHH
Confidence 34445689999999999887777654 133333 99999999999999999999753221 1111111
Q ss_pred ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------
Q 017844 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------- 144 (365)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-------- 144 (365)
+ ..... + .....+++.+..... ..+.|++|||+|.+..
T Consensus 124 ~---------------------~~~~~---g-~~~~~l~~~f~~a~~---------~~p~Il~iDEid~l~~~r~~~~~~ 169 (495)
T TIGR01241 124 F---------------------VEMFV---G-VGASRVRDLFEQAKK---------NAPCIIFIDEIDAVGRQRGAGLGG 169 (495)
T ss_pred H---------------------HHHHh---c-ccHHHHHHHHHHHHh---------cCCCEEEEechhhhhhccccCcCC
Confidence 1 00000 0 011234455544332 2347999999988742
Q ss_pred ------HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 017844 145 ------EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213 (365)
Q Consensus 145 ------~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~ 213 (365)
...+.|+..|+... .++.+|.+||.++.+++++++ |+ ..+.++.|+.+++.++++..+...+.. ++..
T Consensus 170 ~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~ 248 (495)
T TIGR01241 170 GNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVD 248 (495)
T ss_pred ccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchh
Confidence 23345666665432 346788888888999999987 55 379999999999999999888765443 3456
Q ss_pred HHHHHHHcCC-CHHHHHHHHHHH
Q 017844 214 ATRLAEKSNR-SLRRAILSFETC 235 (365)
Q Consensus 214 ~~~i~~~~~g-~lr~ai~~l~~~ 235 (365)
+..+++.+.| +.++..++++.+
T Consensus 249 l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 249 LKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHH
Confidence 7788887766 445555555544
No 109
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.69 E-value=5.4e-16 Score=145.97 Aligned_cols=196 Identities=17% Similarity=0.252 Sum_probs=125.0
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCcccee
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV 68 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~ 68 (365)
++++++.+.+|+++.|.+..++.++.++.. | ..+ +++|+||||||||++|+++|+++..+ .+.+
T Consensus 172 ~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~---fi~V 248 (438)
T PTZ00361 172 MKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT---FLRV 248 (438)
T ss_pred cccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC---EEEE
Confidence 578888889999999999999988887741 1 222 39999999999999999999976321 1111
Q ss_pred ccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----
Q 017844 69 ENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----- 143 (365)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~----- 143 (365)
.+..+ +. .........+++++..... ..+.|++|||+|.+.
T Consensus 249 ~~seL---------------------~~----k~~Ge~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~kR~~ 294 (438)
T PTZ00361 249 VGSEL---------------------IQ----KYLGDGPKLVRELFRVAEE---------NAPSIVFIDEIDAIGTKRYD 294 (438)
T ss_pred ecchh---------------------hh----hhcchHHHHHHHHHHHHHh---------CCCcEEeHHHHHHHhccCCC
Confidence 11110 00 0001111224444443322 245799999998663
Q ss_pred ------HHHHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCC
Q 017844 144 ------REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQL 209 (365)
Q Consensus 144 ------~~~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i 209 (365)
.+.+..++.++.+. ..++.+|++||.++.+++++.+ |+. .|.|++|+.++..++++.++.+..+.
T Consensus 295 ~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~- 373 (438)
T PTZ00361 295 ATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA- 373 (438)
T ss_pred CCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-
Confidence 22344455555432 3467899999999999999875 664 89999999999999999887655442
Q ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHH
Q 017844 210 PSGFATRLAEKSNR-SLRRAILSFETC 235 (365)
Q Consensus 210 ~~~~~~~i~~~~~g-~lr~ai~~l~~~ 235 (365)
++..++.++..+.| +..+..+++..+
T Consensus 374 ~dvdl~~la~~t~g~sgAdI~~i~~eA 400 (438)
T PTZ00361 374 EDVDLEEFIMAKDELSGADIKAICTEA 400 (438)
T ss_pred cCcCHHHHHHhcCCCCHHHHHHHHHHH
Confidence 12235556654443 333333444433
No 110
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.5e-16 Score=146.99 Aligned_cols=193 Identities=19% Similarity=0.241 Sum_probs=134.3
Q ss_pred CCCCCCccccCHHHHHHHHHHHH-----------cC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~ 74 (365)
...+|+++-|+++++..+++.+. -| ..|. +|||||||||||++|+++|.+-.+ +|
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~-----------nF- 496 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM-----------NF- 496 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC-----------Ce-
Confidence 34689999999999999998774 13 2333 999999999999999999996422 11
Q ss_pred ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH---------
Q 017844 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------- 145 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~--------- 145 (365)
-..+.+..+. .+.......+++.++...+.. +.|+++||+|.+..+
T Consensus 497 ------------lsvkgpEL~s----k~vGeSEr~ir~iF~kAR~~a---------P~IiFfDEiDsi~~~R~g~~~~v~ 551 (693)
T KOG0730|consen 497 ------------LSVKGPELFS----KYVGESERAIREVFRKARQVA---------PCIIFFDEIDALAGSRGGSSSGVT 551 (693)
T ss_pred ------------eeccCHHHHH----HhcCchHHHHHHHHHHHhhcC---------CeEEehhhHHhHhhccCCCccchH
Confidence 1111111111 111122335667776655433 379999999987432
Q ss_pred --HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 017844 146 --AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRL 217 (365)
Q Consensus 146 --~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~-~~~~i 217 (365)
..+.||.-|+.. ..++.+|.+||.++.+++++.+ |+ ..++++.|+.+...++++..+++- .++++ .++.|
T Consensus 552 ~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm--p~~~~vdl~~L 629 (693)
T KOG0730|consen 552 DRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM--PFSEDVDLEEL 629 (693)
T ss_pred HHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC--CCCccccHHHH
Confidence 234555555533 3567888889999999999999 77 489999999999999999887654 44455 68899
Q ss_pred HHHcCC-CHHHHHHHHHHHHhcC
Q 017844 218 AEKSNR-SLRRAILSFETCRVQQ 239 (365)
Q Consensus 218 ~~~~~g-~lr~ai~~l~~~~~~~ 239 (365)
++.++| +-.+...+++.++..+
T Consensus 630 a~~T~g~SGAel~~lCq~A~~~a 652 (693)
T KOG0730|consen 630 AQATEGYSGAEIVAVCQEAALLA 652 (693)
T ss_pred HHHhccCChHHHHHHHHHHHHHH
Confidence 997766 5566667777665543
No 111
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.69 E-value=9.9e-16 Score=137.44 Aligned_cols=105 Identities=29% Similarity=0.309 Sum_probs=80.7
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCC------------CcccHHHhccceeEEecCCCHHHHHHHH
Q 017844 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS------------SKVTEAIRSRCLNIRINSPTEEQIVKVL 198 (365)
Q Consensus 131 ~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~------------~~l~~~l~sR~~~i~~~~~~~~~~~~iL 198 (365)
+.|+||||+|+|+.+++..|.+.+|..- ...+|++||.. ..++..+.+||..++..|++.+++.+++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 4699999999999999999999999643 34577777743 2478899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHH
Q 017844 199 EFIAKKEGLQLPSGFATRLAEK-SNRSLRRAILSFETCR 236 (365)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~i~~~-~~g~lr~ai~~l~~~~ 236 (365)
+-+|+.+++.+++++++.+.+. .+.++|.|++++..+.
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 9999999999999999999995 4689999999997654
No 112
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.69 E-value=3.1e-15 Score=132.19 Aligned_cols=107 Identities=24% Similarity=0.287 Sum_probs=92.6
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCC------------CcccHHHhccceeEEecCCCHHHHHHHH
Q 017844 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS------------SKVTEAIRSRCLNIRINSPTEEQIVKVL 198 (365)
Q Consensus 131 ~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~------------~~l~~~l~sR~~~i~~~~~~~~~~~~iL 198 (365)
+.|+||||+|+|+-+++..|.+.||+.- ...+|++||.- ..++..+.+|..++.-.|++.+++.+++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 5699999999999999999999999753 23567777742 3588899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 017844 199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ 238 (365)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~ 238 (365)
+.+++.+++.++++++++++... ..++|.|+++|.-+...
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~ii 411 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASII 411 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHH
Confidence 99999999999999999999964 57999999999854433
No 113
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.7e-15 Score=136.07 Aligned_cols=215 Identities=16% Similarity=0.204 Sum_probs=138.4
Q ss_pred ccCCCCCCccccCHHHHHHHHH----HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCc--cceeccccceecCCC
Q 017844 6 KYRPKTLDQVIVHQDIAQNLKK----LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGS 79 (365)
Q Consensus 6 k~rP~~~~~iig~~~~~~~l~~----~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~--~i~~~~~~~~~~~~~ 79 (365)
-|-|.. +.+.+..++.+.. ++.++...+++++||+|||||++++.+++++...... .++++|..+ .+|..
T Consensus 13 ~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~-~t~~~ 88 (366)
T COG1474 13 DYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL-RTPYQ 88 (366)
T ss_pred CCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC-CCHHH
Confidence 455544 6666666655554 4445555569999999999999999999998776443 477777655 22211
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh--
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-- 157 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-- 157 (365)
-...+ +. .+. .....+... .+.++.+..... .....-|+++||+|.|.....+.|..++..+
T Consensus 89 i~~~i----~~---~~~-~~p~~g~~~----~~~~~~l~~~~~----~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~ 152 (366)
T COG1474 89 VLSKI----LN---KLG-KVPLTGDSS----LEILKRLYDNLS----KKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE 152 (366)
T ss_pred HHHHH----HH---HcC-CCCCCCCch----HHHHHHHHHHHH----hcCCeEEEEEcchhhhccccchHHHHHHhhccc
Confidence 00000 00 000 111112211 122222222211 1345689999999999766545555555433
Q ss_pred -cCceeEEEEecCCC---cccHHHhccce--eEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH---HcCCCHH
Q 017844 158 -SASCRLILCCNSSS---KVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAE---KSNRSLR 226 (365)
Q Consensus 158 -~~~~~~Il~t~~~~---~l~~~l~sR~~--~i~~~~~~~~~~~~iL~~~~~~--~~~~i~~~~~~~i~~---~~~g~lr 226 (365)
..++.+|+++|+.. .+.+.++|++. .|.|+|++.+|+..+|..+++. ....+++++++.++. ..+||+|
T Consensus 153 ~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR 232 (366)
T COG1474 153 NKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDAR 232 (366)
T ss_pred cceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHH
Confidence 23356777777764 57788888874 6889999999999999998864 234688888888875 4578999
Q ss_pred HHHHHHHHHHhcCC
Q 017844 227 RAILSFETCRVQQY 240 (365)
Q Consensus 227 ~ai~~l~~~~~~~~ 240 (365)
.|+.+|..++..+.
T Consensus 233 ~aidilr~A~eiAe 246 (366)
T COG1474 233 KAIDILRRAGEIAE 246 (366)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998776654
No 114
>CHL00176 ftsH cell division protein; Validated
Probab=99.68 E-value=4.5e-15 Score=146.24 Aligned_cols=190 Identities=18% Similarity=0.309 Sum_probs=125.5
Q ss_pred CCCCccccCHHHHHHHHHHHH---c--------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 10 KTLDQVIVHQDIAQNLKKLVT---E--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~---~--------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
.+|++++|.+++++.+...+. . ...+ +++|+||||||||++|+++|++...+ .+.+++..+
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p---~i~is~s~f---- 252 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP---FFSISGSEF---- 252 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eeeccHHHH----
Confidence 579999999988887777652 1 1223 39999999999999999999976322 112222111
Q ss_pred CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HHH
Q 017844 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------REA 146 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~~ 146 (365)
.+.. .+ .....+++.+..... ..+.|++|||+|.+. ...
T Consensus 253 -----------------~~~~---~g-~~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~~r~~~~~~~~~e~ 302 (638)
T CHL00176 253 -----------------VEMF---VG-VGAARVRDLFKKAKE---------NSPCIVFIDEIDAVGRQRGAGIGGGNDER 302 (638)
T ss_pred -----------------HHHh---hh-hhHHHHHHHHHHHhc---------CCCcEEEEecchhhhhcccCCCCCCcHHH
Confidence 0000 00 011124444444322 345799999999873 222
Q ss_pred H---HHHHHHHhhh--cCceeEEEEecCCCcccHHHhcc--c-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017844 147 Q---HSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (365)
Q Consensus 147 ~---~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~ 218 (365)
+ +.|+..++.. ..++.+|.+||+++.++++++++ + ..+.|+.|+.+++.++++.++.+... .++..+..++
T Consensus 303 ~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA 381 (638)
T CHL00176 303 EQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIA 381 (638)
T ss_pred HHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHH
Confidence 3 3344444433 23567888888888899999874 4 48999999999999999998877433 3466788999
Q ss_pred HHcCC-CHHHHHHHHHHHHh
Q 017844 219 EKSNR-SLRRAILSFETCRV 237 (365)
Q Consensus 219 ~~~~g-~lr~ai~~l~~~~~ 237 (365)
+.+.| +.+++.++++.++.
T Consensus 382 ~~t~G~sgaDL~~lvneAal 401 (638)
T CHL00176 382 RRTPGFSGADLANLLNEAAI 401 (638)
T ss_pred hcCCCCCHHHHHHHHHHHHH
Confidence 98887 66666666665544
No 115
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.67 E-value=5.5e-15 Score=138.33 Aligned_cols=193 Identities=20% Similarity=0.291 Sum_probs=124.2
Q ss_pred CCCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~ 74 (365)
...+|+++.|.+.+++.++..+.. | ..| .++|+||||||||++++++|+++..+. +.+.+..+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~~s~l- 215 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVVGSEF- 215 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEehHHH-
Confidence 445899999999999888887631 2 122 399999999999999999999653211 11111000
Q ss_pred ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------
Q 017844 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----------- 143 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~----------- 143 (365)
.. .........+++.+..... ..+.|++|||+|.+.
T Consensus 216 --------------------~~----k~~ge~~~~lr~lf~~A~~---------~~P~ILfIDEID~i~~~r~~~~~~~d 262 (398)
T PTZ00454 216 --------------------VQ----KYLGEGPRMVRDVFRLARE---------NAPSIIFIDEVDSIATKRFDAQTGAD 262 (398)
T ss_pred --------------------HH----HhcchhHHHHHHHHHHHHh---------cCCeEEEEECHhhhccccccccCCcc
Confidence 00 0000111234444443322 345799999998763
Q ss_pred HHHHHHHHHHHhh---h--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017844 144 REAQHSLRRTMEK---Y--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (365)
Q Consensus 144 ~~~~~~Ll~~le~---~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~ 215 (365)
...+..+..++.. . ..++.+|++||+++.+++++.+ |+. .|.|+.|+.++...+++.++.+.++. ++-.+.
T Consensus 263 ~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~ 341 (398)
T PTZ00454 263 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLE 341 (398)
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHH
Confidence 2333444444433 2 2467899999999999999886 663 79999999999999999888766554 233466
Q ss_pred HHHHHcCC-CHHHHHHHHHHHHhc
Q 017844 216 RLAEKSNR-SLRRAILSFETCRVQ 238 (365)
Q Consensus 216 ~i~~~~~g-~lr~ai~~l~~~~~~ 238 (365)
.++..+.| +.++..++++.+...
T Consensus 342 ~la~~t~g~sgaDI~~l~~eA~~~ 365 (398)
T PTZ00454 342 DFVSRPEKISAADIAAICQEAGMQ 365 (398)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHH
Confidence 77776655 555555666555443
No 116
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.66 E-value=1.6e-15 Score=154.29 Aligned_cols=194 Identities=15% Similarity=0.187 Sum_probs=124.4
Q ss_pred ccccCHHHHHHHHHHHHc------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844 14 QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (365)
Q Consensus 14 ~iig~~~~~~~l~~~l~~------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (365)
+++|++++++.+..++.. .+.++++|+||||||||++|+++|+.+..+. ..+...+ . .+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~-~~i~~~~--~--------~~~--~ 387 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF-VRFSLGG--V--------RDE--A 387 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe-EEEeCCC--c--------ccH--H
Confidence 478999999998886642 2334599999999999999999999874321 1111110 0 000 0
Q ss_pred ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH----HHHHHHHHhhh------
Q 017844 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKY------ 157 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~----~~~Ll~~le~~------ 157 (365)
.+.. ..-.+. +...+ .+.+.+... .....|++|||+|.+.... .++|++.|+..
T Consensus 388 ~i~g-~~~~~~----g~~~g-~i~~~l~~~----------~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~ 451 (775)
T TIGR00763 388 EIRG-HRRTYV----GAMPG-RIIQGLKKA----------KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFS 451 (775)
T ss_pred HHcC-CCCcee----CCCCc-hHHHHHHHh----------CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccc
Confidence 0000 000001 10011 122222221 1123599999999996532 47788888631
Q ss_pred ---------cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHH
Q 017844 158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-----KE-----GLQLPSGFATRLA 218 (365)
Q Consensus 158 ---------~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~-----~~-----~~~i~~~~~~~i~ 218 (365)
..++.||++||....+++++++||.++.|++++.++...+++..+. .. ++.++++++..|+
T Consensus 452 d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~ 531 (775)
T TIGR00763 452 DHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLI 531 (775)
T ss_pred cccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHH
Confidence 1357788899998899999999999999999999999999877552 22 4578999999999
Q ss_pred HHcC--CCHHHHHHHHHHHH
Q 017844 219 EKSN--RSLRRAILSFETCR 236 (365)
Q Consensus 219 ~~~~--g~lr~ai~~l~~~~ 236 (365)
+... ..+|.....++.++
T Consensus 532 ~~~~~e~g~R~l~r~i~~~~ 551 (775)
T TIGR00763 532 KYYTREAGVRNLERQIEKIC 551 (775)
T ss_pred HhcChhcCChHHHHHHHHHH
Confidence 8543 35566555555444
No 117
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.66 E-value=5e-15 Score=141.55 Aligned_cols=177 Identities=16% Similarity=0.135 Sum_probs=119.1
Q ss_pred CCCCccccCHHHHHHHHHHHH--------cC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 10 KTLDQVIVHQDIAQNLKKLVT--------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~--------~~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
.+|+++.|.+.+++.+..... .| ..|. +||+||||||||++|+++|+++..+- +.+++..+
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~~~~l------ 295 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLDVGKL------ 295 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEEhHHh------
Confidence 579999999888877765321 12 2233 99999999999999999999763221 11111000
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------------HHH
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------EAQ 147 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------------~~~ 147 (365)
+ . .........+++.+...... .+.|++|||+|.+.. ...
T Consensus 296 ---------------~---~-~~vGese~~l~~~f~~A~~~---------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl 347 (489)
T CHL00195 296 ---------------F---G-GIVGESESRMRQMIRIAEAL---------SPCILWIDEIDKAFSNSESKGDSGTTNRVL 347 (489)
T ss_pred ---------------c---c-cccChHHHHHHHHHHHHHhc---------CCcEEEehhhhhhhccccCCCCchHHHHHH
Confidence 0 0 00111122355555543322 347999999986532 123
Q ss_pred HHHHHHHhhhcCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCC
Q 017844 148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRLAEKSNR 223 (365)
Q Consensus 148 ~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~-i~~~~~~~i~~~~~g 223 (365)
..|+..|.+....+.+|.+||+++.+++++.+ |+. .+.++.|+.+++.++++.++.+.+.. .++..++.+++.+.|
T Consensus 348 ~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~G 427 (489)
T CHL00195 348 ATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNK 427 (489)
T ss_pred HHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCC
Confidence 45667777666667788899999999999976 774 79999999999999999988875432 345668888887765
No 118
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.65 E-value=7.3e-15 Score=149.85 Aligned_cols=199 Identities=16% Similarity=0.293 Sum_probs=137.0
Q ss_pred CccccCHHHHHHHHHHHHc-------CCCC--eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 13 DQVIVHQDIAQNLKKLVTE-------QDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~-------~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
+.++||+.++..+...+.. ...| .++|+||+|+|||.+|++++..++......+.+++..| ..+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~-~~~~----- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEF-QEAH----- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHh-hhhh-----
Confidence 3578999999988888743 1122 28999999999999999999988765444445554433 1000
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----- 158 (365)
+....+.-.+...+......+.+ .+. ..++.||++||++.++++.++.|++++++..
T Consensus 640 ------~~~~l~g~~~gyvg~~~~g~L~~---~v~---------~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~ 701 (852)
T TIGR03345 640 ------TVSRLKGSPPGYVGYGEGGVLTE---AVR---------RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGE 701 (852)
T ss_pred ------hhccccCCCCCcccccccchHHH---HHH---------hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCC
Confidence 00011111111112111111222 222 1245799999999999999999999998753
Q ss_pred ------CceeEEEEecCCC-----------------------------cccHHHhccceeEEecCCCHHHHHHHHHHHHH
Q 017844 159 ------ASCRLILCCNSSS-----------------------------KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK 203 (365)
Q Consensus 159 ------~~~~~Il~t~~~~-----------------------------~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~ 203 (365)
.++.||++||-.. .+.|++.+||.++.|.+++.+++.+++...+.
T Consensus 702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 702 GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHH
Confidence 5677888877311 15688899999999999999999999877654
Q ss_pred H-------c-CC--CCCHHHHHHHHHHcCC---CHHHHHHHHHHH
Q 017844 204 K-------E-GL--QLPSGFATRLAEKSNR---SLRRAILSFETC 235 (365)
Q Consensus 204 ~-------~-~~--~i~~~~~~~i~~~~~g---~lr~ai~~l~~~ 235 (365)
. . |+ .++++++++|++.+.+ +.|.+.+.++..
T Consensus 782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 3 1 43 6899999999998876 789888888764
No 119
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.6e-15 Score=138.17 Aligned_cols=184 Identities=18% Similarity=0.272 Sum_probs=127.7
Q ss_pred CCCccccCHHHHHHHHHHHHc----------CCCCe--EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844 11 TLDQVIVHQDIAQNLKKLVTE----------QDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~----------~~~~~--lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~ 78 (365)
+|.++-|.+..+..|...+.. |-.|+ +||+||||||||.+|+++|+++.-| |
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-----------f----- 251 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-----------F----- 251 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-----------e-----
Confidence 489999999888887776631 32233 9999999999999999999987221 1
Q ss_pred CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-----------HH
Q 017844 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------AQ 147 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-----------~~ 147 (365)
-.++.+..+ . .........++++++...... +.|+||||+|.+.+. ..
T Consensus 252 --------~~isApeiv---S-GvSGESEkkiRelF~~A~~~a---------PcivFiDeIDAI~pkRe~aqreMErRiV 310 (802)
T KOG0733|consen 252 --------LSISAPEIV---S-GVSGESEKKIRELFDQAKSNA---------PCIVFIDEIDAITPKREEAQREMERRIV 310 (802)
T ss_pred --------Eeecchhhh---c-ccCcccHHHHHHHHHHHhccC---------CeEEEeecccccccchhhHHHHHHHHHH
Confidence 111111111 1 111223345777777765443 479999999999753 22
Q ss_pred HHHHHHHhhhc------CceeEEEEecCCCcccHHHhcc--c-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017844 148 HSLRRTMEKYS------ASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (365)
Q Consensus 148 ~~Ll~~le~~~------~~~~~Il~t~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~ 218 (365)
..|+..|++.. ..+.+|.+||.++.+++++++- + ..|.+.-|+..+..+||+.+|+...+.- +-.+..||
T Consensus 311 aQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA 389 (802)
T KOG0733|consen 311 AQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLA 389 (802)
T ss_pred HHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHH
Confidence 35777777653 3477888999999999999874 4 3799999999999999999998554432 33477888
Q ss_pred HHcCCCHHHHHHHH
Q 017844 219 EKSNRSLRRAILSF 232 (365)
Q Consensus 219 ~~~~g~lr~ai~~l 232 (365)
+.+.|-++.=+..|
T Consensus 390 ~lTPGfVGADL~AL 403 (802)
T KOG0733|consen 390 KLTPGFVGADLMAL 403 (802)
T ss_pred hcCCCccchhHHHH
Confidence 88888665544433
No 120
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.65 E-value=6.4e-15 Score=138.49 Aligned_cols=189 Identities=21% Similarity=0.283 Sum_probs=121.1
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
.+|+++.|.+..++.++..+.. | ..| +++|+||||||||++|+++|+++..+ .+.+.+..+
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~---~i~v~~~~l--- 201 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT---FIRVVGSEL--- 201 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC---EEEeehHHH---
Confidence 4788999999999888887631 1 223 39999999999999999999976321 111111111
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HH
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE 145 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~ 145 (365)
.. .........+++.+..... ..+.||+|||+|.+. .+
T Consensus 202 ------------------~~----~~~g~~~~~i~~~f~~a~~---------~~p~IlfiDEiD~l~~~r~~~~~~~~~~ 250 (389)
T PRK03992 202 ------------------VQ----KFIGEGARLVRELFELARE---------KAPSIIFIDEIDAIAAKRTDSGTSGDRE 250 (389)
T ss_pred ------------------hH----hhccchHHHHHHHHHHHHh---------cCCeEEEEechhhhhcccccCCCCccHH
Confidence 00 0000111123444433322 234799999999872 34
Q ss_pred HHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844 146 AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (365)
Q Consensus 146 ~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i 217 (365)
.+..+..++.+. ..++.+|++||.++.+++++.+ |+. .++|++|+.++..++++.++....+. .+..+..+
T Consensus 251 ~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~l 329 (389)
T PRK03992 251 VQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEEL 329 (389)
T ss_pred HHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHH
Confidence 455566665432 2467899999999999999986 664 79999999999999999887654432 12346777
Q ss_pred HHHcCC-CHHHHHHHHHHHH
Q 017844 218 AEKSNR-SLRRAILSFETCR 236 (365)
Q Consensus 218 ~~~~~g-~lr~ai~~l~~~~ 236 (365)
++.+.| +.++...++..++
T Consensus 330 a~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 330 AELTEGASGADLKAICTEAG 349 (389)
T ss_pred HHHcCCCCHHHHHHHHHHHH
Confidence 777665 3344444444433
No 121
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.64 E-value=9.3e-15 Score=139.51 Aligned_cols=185 Identities=15% Similarity=0.248 Sum_probs=116.0
Q ss_pred ccccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
.+++.+.+|+++.|.+..++.++..+.. | ..+. ++||||||||||++++++++++..+...... ..
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~-~~ 251 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETG-DK 251 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccC-Cc
Confidence 3667788999999999999888887631 2 2233 9999999999999999999987433111000 00
Q ss_pred ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-----
Q 017844 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----- 145 (365)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~----- 145 (365)
..| ..+ .....+. .........++.++....... ..+.+.|++|||+|.+...
T Consensus 252 ~~f--------l~v-----~~~eLl~----kyvGete~~ir~iF~~Ar~~a-----~~g~p~IIfIDEiD~L~~~R~~~~ 309 (512)
T TIGR03689 252 SYF--------LNI-----KGPELLN----KYVGETERQIRLIFQRAREKA-----SDGRPVIVFFDEMDSIFRTRGSGV 309 (512)
T ss_pred eeE--------Eec-----cchhhcc----cccchHHHHHHHHHHHHHHHh-----hcCCCceEEEehhhhhhcccCCCc
Confidence 000 000 0000000 000011112344444333221 1235679999999977321
Q ss_pred -------HHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844 146 -------AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (365)
Q Consensus 146 -------~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~ 212 (365)
..+.|+..|+... .++.+|.+||+++.+++++++ |+. .|+|++|+.++..++++.++.. .+.++++
T Consensus 310 s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~ 387 (512)
T TIGR03689 310 SSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDAD 387 (512)
T ss_pred cchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHH
Confidence 2345666666433 467888999999999999998 774 6999999999999999988754 3444333
No 122
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.64 E-value=4.1e-15 Score=152.66 Aligned_cols=205 Identities=18% Similarity=0.275 Sum_probs=143.2
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~ 82 (365)
++++.||..++.++|+++.++.+...+.++..++.+|+||||+|||++++.++..+...... ....+..
T Consensus 163 l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p-~~l~~~~---------- 231 (852)
T TIGR03346 163 LTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVP-ESLKNKR---------- 231 (852)
T ss_pred HHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCc-hhhcCCe----------
Confidence 56788999999999999999999888877777779999999999999999999976432110 0000100
Q ss_pred eccccccccccceecCCC------CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------HHHH
Q 017844 83 DLELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQH 148 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------~~~~ 148 (365)
.+.+... .........++.+++.+.. ..++.|+||||+|.+.. ++.+
T Consensus 232 -----------~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~--------~~~~~ILfIDEih~l~~~g~~~~~~d~~~ 292 (852)
T TIGR03346 232 -----------LLALDMGALIAGAKYRGEFEERLKAVLNEVTK--------SEGQIILFIDELHTLVGAGKAEGAMDAGN 292 (852)
T ss_pred -----------EEEeeHHHHhhcchhhhhHHHHHHHHHHHHHh--------cCCCeEEEeccHHHhhcCCCCcchhHHHH
Confidence 0111100 0111111134444544432 12357999999998852 2445
Q ss_pred HHHHHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 017844 149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE 219 (365)
Q Consensus 149 ~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~ 219 (365)
.|...++ .....+|.+|+..+ ..++++.+||+.+.++.|+.++...+|+....+ .++.++++++..++.
T Consensus 293 ~Lk~~l~--~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ 370 (852)
T TIGR03346 293 MLKPALA--RGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAAT 370 (852)
T ss_pred Hhchhhh--cCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHH
Confidence 5555543 34577888887653 468999999999999999999999999876554 467889999999998
Q ss_pred HcCC---C---HHHHHHHHHHHHhcC
Q 017844 220 KSNR---S---LRRAILSFETCRVQQ 239 (365)
Q Consensus 220 ~~~g---~---lr~ai~~l~~~~~~~ 239 (365)
.+.+ + +.+|+.+|+.+++..
T Consensus 371 ls~~yi~~r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 371 LSHRYITDRFLPDKAIDLIDEAAARI 396 (852)
T ss_pred hccccccccCCchHHHHHHHHHHHHH
Confidence 7754 3 778999999877653
No 123
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.5e-15 Score=137.27 Aligned_cols=190 Identities=17% Similarity=0.230 Sum_probs=126.4
Q ss_pred CCCCccccCHHHHHHHHHHHH-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 10 KTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~-----------~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
.+|+|+-|-+++++.|.+.++ +|+.|. +||+||||+|||.|||++|++.. ...++..|.+|
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~---VPFF~~sGSEF---- 373 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG---VPFFYASGSEF---- 373 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC---CCeEeccccch----
Confidence 469999999999988887764 477777 99999999999999999999752 22222233222
Q ss_pred CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HHH
Q 017844 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------REA 146 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~~ 146 (365)
-++.. | .....+++++...... .+.||+|||+|.+. ...
T Consensus 374 -----------------dEm~V---G-vGArRVRdLF~aAk~~---------APcIIFIDEiDavG~kR~~~~~~y~kqT 423 (752)
T KOG0734|consen 374 -----------------DEMFV---G-VGARRVRDLFAAAKAR---------APCIIFIDEIDAVGGKRNPSDQHYAKQT 423 (752)
T ss_pred -----------------hhhhh---c-ccHHHHHHHHHHHHhc---------CCeEEEEechhhhcccCCccHHHHHHHH
Confidence 11100 1 1122477777665443 34799999999873 123
Q ss_pred HHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 017844 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEK 220 (365)
Q Consensus 147 ~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~-~~~~~~i~~~ 220 (365)
.|.||--|+.+.. .+.+|.+||-++.+++++.+ |+ ..|.++.|+..-..+||+.++.+- ..+ +-....||+-
T Consensus 424 lNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiARG 501 (752)
T KOG0734|consen 424 LNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIARG 501 (752)
T ss_pred HHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhccC
Confidence 3455555554443 46677788889999999977 44 379999999999999999888653 222 2235666775
Q ss_pred cCC-CHHHHHHHHHHHHhc
Q 017844 221 SNR-SLRRAILSFETCRVQ 238 (365)
Q Consensus 221 ~~g-~lr~ai~~l~~~~~~ 238 (365)
+.| +--+.-|++++++.+
T Consensus 502 T~GFsGAdLaNlVNqAAlk 520 (752)
T KOG0734|consen 502 TPGFSGADLANLVNQAALK 520 (752)
T ss_pred CCCCchHHHHHHHHHHHHH
Confidence 554 333444555555444
No 124
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.63 E-value=3e-14 Score=142.81 Aligned_cols=204 Identities=14% Similarity=0.203 Sum_probs=133.6
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (365)
+-..++.++|.+..+..+...+.+....+++|+||||+|||++++.++..+..........++..+ ..
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~---------~l--- 248 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY---------SL--- 248 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEE---------ec---
Confidence 345678899999999888888877666679999999999999999999876433211111111111 00
Q ss_pred ccccccceecCC-CCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhhh
Q 017844 88 TLSSANHVELSP-SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRRTMEKY 157 (365)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------~~~~~~Ll~~le~~ 157 (365)
. .-.+.. ..........++.+++.+.. .++.|++|||+|.+. .+..+.|...++.
T Consensus 249 --~---~~~llaG~~~~Ge~e~rl~~l~~~l~~---------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~- 313 (758)
T PRK11034 249 --D---IGSLLAGTKYRGDFEKRFKALLKQLEQ---------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS- 313 (758)
T ss_pred --c---HHHHhcccchhhhHHHHHHHHHHHHHh---------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-
Confidence 0 000110 00011111123344444432 133699999999872 1223334444442
Q ss_pred cCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC-----
Q 017844 158 SASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----KEGLQLPSGFATRLAEKSNR----- 223 (365)
Q Consensus 158 ~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~----~~~~~i~~~~~~~i~~~~~g----- 223 (365)
....+|.+|+..+ ..++++.+||+.|.+++|+.++..++|+.+.. .+++.++++++..+++.+..
T Consensus 314 -g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r 392 (758)
T PRK11034 314 -GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR 392 (758)
T ss_pred -CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCc
Confidence 3567777777643 46899999999999999999999999987654 35788999999998886653
Q ss_pred -CHHHHHHHHHHHHhcC
Q 017844 224 -SLRRAILSFETCRVQQ 239 (365)
Q Consensus 224 -~lr~ai~~l~~~~~~~ 239 (365)
-+.+|+.+|+.+++..
T Consensus 393 ~lPdKaidlldea~a~~ 409 (758)
T PRK11034 393 HLPDKAIDVIDEAGARA 409 (758)
T ss_pred cChHHHHHHHHHHHHhh
Confidence 3558999999887643
No 125
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.62 E-value=1.7e-13 Score=126.31 Aligned_cols=286 Identities=15% Similarity=0.192 Sum_probs=190.7
Q ss_pred HHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844 23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (365)
Q Consensus 23 ~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (365)
+.+...++.+..++ ++|+|..-.-....+..+...+..+.... . +...+
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~-----------------------------~-~~~~~ 53 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELK-----------------------------T-LYFDE 53 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhh-----------------------------h-hchhh
Confidence 35666778887877 99999987777777777766442221100 0 00000
Q ss_pred cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc---ccHHHh
Q 017844 102 AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK---VTEAIR 178 (365)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~---l~~~l~ 178 (365)
....+++..+ ...|+ .+++++|++.++..+.......|...++.++....+|++.....+ +...+.
T Consensus 54 ------~~~~~i~~~~-~t~pl----F~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~ 122 (328)
T PRK08487 54 ------YDFEQAKDFL-SQSSL----FGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQ 122 (328)
T ss_pred ------ccHHHHHHHH-hcccc----cCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhc
Confidence 1133444443 33333 567799999988766666667889999888765555554443332 112222
Q ss_pred cc--ceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--CCCCCCHH
Q 017844 179 SR--CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--AIPAMDWE 254 (365)
Q Consensus 179 sR--~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~--~~~~~~~~ 254 (365)
.. ...+.|.+++..++..|+...+++.|+.+++++++.++..+++|+..+.+.|++++.+.+.++.++ .+.....+
T Consensus 123 ~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e 202 (328)
T PRK08487 123 KKDEAVFVRFFKPNAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGS 202 (328)
T ss_pred cCCCceEEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhccccc
Confidence 22 457999999999999999999999999999999999999999999999999999999877666655 33444567
Q ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC----------CH------------HHHHH
Q 017844 255 EFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL----------DA------------EIKHE 312 (365)
Q Consensus 255 ~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~----------~~------------~~~~~ 312 (365)
..+|+++++++.++ .+...+..++..|.+|..|+..+.+++..-+ .. -....
T Consensus 203 ~~vF~l~dai~~g~------~a~~~l~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~ 276 (328)
T PRK08487 203 VSFEDFFEKLLNKK------DIKDDLEKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAEN 276 (328)
T ss_pred ccHHHHHHHHHCCC------cHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHH
Confidence 88999999999864 1345577788899999999888887764410 00 01122
Q ss_pred HHHHHHHhhhh-hHHHHhhhcccCCCCCcccc-ccccc--cccchhccc
Q 017844 313 VCHWAAYYVSI-SFQILFIVPLVDFPSPLECS-AQAAY--IQPPLIRAN 357 (365)
Q Consensus 313 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~ 357 (365)
..+.+..|+.. +.+++.. +.+.+...|++ ...++ ++++|+.+.
T Consensus 277 ~~~q~~~~s~~~L~~~l~~--L~e~D~~lK~g~~~~~~~~~~~~~~~~~ 323 (328)
T PRK08487 277 LAKQAIKIKEAQYKEIFEL--LLEWELELKTGQKIDKNLFLLSTLIKIQ 323 (328)
T ss_pred HHHHHhccCHHHHHHHHHH--HHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 34556666655 4444332 44444344443 33333 888888764
No 126
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.62 E-value=7.9e-15 Score=150.05 Aligned_cols=205 Identities=15% Similarity=0.253 Sum_probs=142.7
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~ 82 (365)
.+++.||..++.++|+++.++.+...+.+...++++|+||||+|||++++.++..+...... ..+.+
T Consensus 168 l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp-~~l~~------------ 234 (857)
T PRK10865 168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP-EGLKG------------ 234 (857)
T ss_pred HHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCc-hhhCC------------
Confidence 45678999999999999999888888878777779999999999999999999976432110 00000
Q ss_pred eccccccccccceecCCCC--cCc----cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------HHHH
Q 017844 83 DLELTTLSSANHVELSPSD--AGF----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQH 148 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------~~~~ 148 (365)
...+.+.... .+. .....++.+++.+... .++.|+||||+|.+.. ++++
T Consensus 235 ---------~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~--------~~~~ILfIDEih~l~~~~~~~~~~d~~~ 297 (857)
T PRK10865 235 ---------RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ--------EGNVILFIDELHTMVGAGKADGAMDAGN 297 (857)
T ss_pred ---------CEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHc--------CCCeEEEEecHHHhccCCCCccchhHHH
Confidence 0011111110 111 1111344455544321 2447999999998853 2466
Q ss_pred HHHHHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 017844 149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE 219 (365)
Q Consensus 149 ~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~ 219 (365)
.|...++. +...+|.+|+..+ ..++++.+||+.|.+..|+.++...+|+....+ .++.++++++...+.
T Consensus 298 ~lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ 375 (857)
T PRK10865 298 MLKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAAT 375 (857)
T ss_pred Hhcchhhc--CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHH
Confidence 66666653 4677888887765 478999999999999999999999999876643 367888999888777
Q ss_pred HcC------CCHHHHHHHHHHHHhcC
Q 017844 220 KSN------RSLRRAILSFETCRVQQ 239 (365)
Q Consensus 220 ~~~------g~lr~ai~~l~~~~~~~ 239 (365)
.+. --+..|+.+++.++...
T Consensus 376 ls~ry~~~~~~pdkAi~LiD~aaa~~ 401 (857)
T PRK10865 376 LSHRYIADRQLPDKAIDLIDEAASSI 401 (857)
T ss_pred HhhccccCCCCChHHHHHHHHHhccc
Confidence 653 34568899998877653
No 127
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.62 E-value=3.6e-14 Score=129.77 Aligned_cols=224 Identities=13% Similarity=0.098 Sum_probs=163.1
Q ss_pred CCCceEEEEeCCCCCC-HHHHHHHHHHHhhhcCceeEEEEecCCCc---ccHHHh--ccceeEEecCCCHHHHHHHHHHH
Q 017844 128 KRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSK---VTEAIR--SRCLNIRINSPTEEQIVKVLEFI 201 (365)
Q Consensus 128 ~~~~~vliiDE~~~L~-~~~~~~Ll~~le~~~~~~~~Il~t~~~~~---l~~~l~--sR~~~i~~~~~~~~~~~~iL~~~ 201 (365)
.++.++++|++++.+. ....+.|.+.+++++.++.+|++++..+. +...+. ++|.++.|.+++..++..++...
T Consensus 44 f~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 123 (302)
T TIGR01128 44 FSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQAR 123 (302)
T ss_pred ccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHH
Confidence 4567999999999876 45678999999999888888888876552 212233 49999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHH
Q 017844 202 AKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY--PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVR 277 (365)
Q Consensus 202 ~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~--~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~ 277 (365)
+.++|+.+++++++.++..++||++.+.+.+++++.+.+ .++.++ .+.....+..+++++++++.+ +...+.
T Consensus 124 ~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~----~~~~a~ 199 (302)
T TIGR01128 124 LKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEG----KAARAL 199 (302)
T ss_pred HHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCC----CHHHHH
Confidence 999999999999999999999999999999999988743 333222 112223344578899999875 345566
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHh---------------------CCHHHHHHHHHHHHHhhhh-hHHHHhhhcccC
Q 017844 278 GKLYELLLNCVPPVVVLKRLLYELLKR---------------------LDAEIKHEVCHWAAYYVSI-SFQILFIVPLVD 335 (365)
Q Consensus 278 ~~l~~l~~~~~~~~~il~~l~~~l~~~---------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 335 (365)
..+..+...|.+|..++..+..++..- +.+.....+.+.+..|+.. +..++. .+.+
T Consensus 200 ~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~--~l~~ 277 (302)
T TIGR01128 200 RILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQ--ELAE 277 (302)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHH--HHHH
Confidence 667788889999999999888876541 1222234445556666544 333332 2455
Q ss_pred CCCCcc--ccccccc-cccchhccc
Q 017844 336 FPSPLE--CSAQAAY-IQPPLIRAN 357 (365)
Q Consensus 336 ~~~~~~--~~~~~~~-~~~~~~~~~ 357 (365)
.....| +...+.. +|..++++|
T Consensus 278 ~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 278 ADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 554555 3555555 888888875
No 128
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.61 E-value=7.6e-15 Score=137.34 Aligned_cols=178 Identities=19% Similarity=0.319 Sum_probs=113.9
Q ss_pred CCCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~ 74 (365)
...+|+++.|.+..++.++.++.. | ..+ +++|+||||||||++++++++.+..+. +.+.+..
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~---~~v~~~~-- 191 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVVGSE-- 191 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE---EecchHH--
Confidence 345788999999999988887742 1 123 399999999999999999999763221 0010000
Q ss_pred ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------
Q 017844 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----------- 143 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~----------- 143 (365)
... ...+ .....+++.+.... ...+.|++|||+|.+.
T Consensus 192 -------------------l~~---~~~g-~~~~~i~~~f~~a~---------~~~p~il~iDEiD~l~~~~~~~~~~~~ 239 (364)
T TIGR01242 192 -------------------LVR---KYIG-EGARLVREIFELAK---------EKAPSIIFIDEIDAIAAKRTDSGTSGD 239 (364)
T ss_pred -------------------HHH---Hhhh-HHHHHHHHHHHHHH---------hcCCcEEEhhhhhhhccccccCCCCcc
Confidence 000 0000 01112333333222 1234799999999873
Q ss_pred HHHHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017844 144 REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (365)
Q Consensus 144 ~~~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~ 215 (365)
...+..+...+.+. ..++.+|++||.++.+++++.+ |+ ..+.|+.|+.++..++++..+...... ++..+.
T Consensus 240 ~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~ 318 (364)
T TIGR01242 240 REVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLE 318 (364)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHH
Confidence 33445555555432 3468899999999999999975 55 379999999999999999877544332 123467
Q ss_pred HHHHHcCC
Q 017844 216 RLAEKSNR 223 (365)
Q Consensus 216 ~i~~~~~g 223 (365)
.+++.+.|
T Consensus 319 ~la~~t~g 326 (364)
T TIGR01242 319 AIAKMTEG 326 (364)
T ss_pred HHHHHcCC
Confidence 77777765
No 129
>PRK07914 hypothetical protein; Reviewed
Probab=99.61 E-value=1.1e-13 Score=127.27 Aligned_cols=226 Identities=11% Similarity=0.063 Sum_probs=168.7
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC---cccHHHhccc-eeEEecCC-CHHHHHHHHHHH
Q 017844 127 GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIRSRC-LNIRINSP-TEEQIVKVLEFI 201 (365)
Q Consensus 127 ~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~---~l~~~l~sR~-~~i~~~~~-~~~~~~~iL~~~ 201 (365)
..+++++|+++++..+..+..+.|..+++.+++.+.+|++++... ++..++.... .++.+.++ +..++..|+...
T Consensus 61 lF~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~ 140 (320)
T PRK07914 61 LFAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKE 140 (320)
T ss_pred CCCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHH
Confidence 367789999999877766677789999999888787887765433 2344666553 58899998 999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHH
Q 017844 202 AKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-QYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRG 278 (365)
Q Consensus 202 ~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~-~~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ 278 (365)
+++.|+++++++++.+++..+||+..+.+.+++++.+ ++.++.+. .+.....+..+|++++++..+ +..++..
T Consensus 141 a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g----~~~~A~~ 216 (320)
T PRK07914 141 FRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAG----DVAGAAE 216 (320)
T ss_pred HHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCC----CHHHHHH
Confidence 9999999999999999999999999999999998765 33455443 344455667899999999985 4566777
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHH------------------hCCHHHHHHHHHHHHHhhhh-hHHHHhhhcccCCCCC
Q 017844 279 KLYELLLNCVPPVVVLKRLLYELLK------------------RLDAEIKHEVCHWAAYYVSI-SFQILFIVPLVDFPSP 339 (365)
Q Consensus 279 ~l~~l~~~~~~~~~il~~l~~~l~~------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 339 (365)
.+..++..|.+|..|+..+.+++.. .+.+--...+.+.+..|+.. +.+.+.. +.+....
T Consensus 217 ~l~~L~~~ge~p~~il~~l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~--l~~~D~~ 294 (320)
T PRK07914 217 ALRWAMMRGEPHVVLADALAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRV--VAALNAD 294 (320)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHH--HHHHHHH
Confidence 7888889999999998888776554 01111223345555666655 4444332 5555556
Q ss_pred cccc-ccccc-cccchhcccC
Q 017844 340 LECS-AQAAY-IQPPLIRANS 358 (365)
Q Consensus 340 ~~~~-~~~~~-~~~~~~~~~~ 358 (365)
.|++ .++.+ +|+.|++++.
T Consensus 295 lK~~~~~~~~~lE~~i~~~~~ 315 (320)
T PRK07914 295 VKGAAADADYALESAVRRVAE 315 (320)
T ss_pred hhcCCCChHHHHHHHHHHHHH
Confidence 6654 77888 9999999865
No 130
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.61 E-value=2.1e-14 Score=145.85 Aligned_cols=177 Identities=18% Similarity=0.239 Sum_probs=119.4
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
.+|+++.|.+.+++.|+..+.- + +.+. ++|+||||||||++|+++|+++..+ .+.+.+..+
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~---fi~v~~~~l--- 523 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN---FIAVRGPEI--- 523 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC---EEEEehHHH---
Confidence 4789999999999988887641 1 2333 9999999999999999999975321 111111100
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------------
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------ 144 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------------ 144 (365)
+. .........+++.+..... ..+.|++|||+|.+.+
T Consensus 524 ------------------~~----~~vGese~~i~~~f~~A~~---------~~p~iifiDEid~l~~~r~~~~~~~~~~ 572 (733)
T TIGR01243 524 ------------------LS----KWVGESEKAIREIFRKARQ---------AAPAIIFFDEIDAIAPARGARFDTSVTD 572 (733)
T ss_pred ------------------hh----cccCcHHHHHHHHHHHHHh---------cCCEEEEEEChhhhhccCCCCCCccHHH
Confidence 00 0111112235555555433 2458999999987731
Q ss_pred HHHHHHHHHHhh--hcCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017844 145 EAQHSLRRTMEK--YSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219 (365)
Q Consensus 145 ~~~~~Ll~~le~--~~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~ 219 (365)
...+.|+..|+. ...++.+|.+||.++.+++++++ ||. .+.|+.|+.++..++++....+..+. ++..++.+++
T Consensus 573 ~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~ 651 (733)
T TIGR01243 573 RIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAE 651 (733)
T ss_pred HHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Confidence 234567777764 34567888899999999999986 885 89999999999999998765443322 2335788888
Q ss_pred HcCCC
Q 017844 220 KSNRS 224 (365)
Q Consensus 220 ~~~g~ 224 (365)
.+.|-
T Consensus 652 ~t~g~ 656 (733)
T TIGR01243 652 MTEGY 656 (733)
T ss_pred HcCCC
Confidence 77763
No 131
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.60 E-value=1.4e-13 Score=127.06 Aligned_cols=280 Identities=20% Similarity=0.214 Sum_probs=186.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHH
Q 017844 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI 114 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (365)
|.++|||+...-+...++.+.+.+..+.....++ ..+...+. ..+.+.+
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~--------------------------~~~d~~~~-----~~~~~~~ 50 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNY--------------------------SRLDGDDA-----DQAIQAL 50 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcch--------------------------hhcCCccc-----hHHHHHH
Confidence 4589999999888888888877553322111000 11111111 1123444
Q ss_pred HHHHhcCCCCCCCCCCceEEEEeCCCCC---CHHHHHHHHHHHhhhcCceeEEEEecC-CC---cccHHHhccceeEEec
Q 017844 115 KEMAKNRPIDTKGKRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNS-SS---KVTEAIRSRCLNIRIN 187 (365)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~vliiDE~~~L---~~~~~~~Ll~~le~~~~~~~~Il~t~~-~~---~l~~~l~sR~~~i~~~ 187 (365)
.. +...|+ .+++++|++++++.+ ..+..+.|.++++.+++++.+|+++.. .+ +....+...+.+..|.
T Consensus 51 ~~-~~t~pf----f~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~ 125 (326)
T PRK07452 51 NE-AMTPPF----GSGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFS 125 (326)
T ss_pred HH-hcCCCC----CCCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEec
Confidence 33 233343 567799999998654 567778899999998888888886543 22 3455677777777776
Q ss_pred CC---CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--C--CCCCCC--CCCCCCHHHHHH
Q 017844 188 SP---TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ--Y--PFKDNQ--AIPAMDWEEFVF 258 (365)
Q Consensus 188 ~~---~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~--~--~~~~~~--~~~~~~~~~~i~ 258 (365)
++ +.+++..|+...+++.|+.+++++++.++..+++|++.+.+.+++++.+. . .++.++ .+... .+..+|
T Consensus 126 ~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~-~~~~if 204 (326)
T PRK07452 126 LIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSN-TTQNSL 204 (326)
T ss_pred CCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcc-CcCcHH
Confidence 55 45779999999999999999999999999999999999999999998872 2 455444 22222 246789
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC----------C-HH-H-----------HHHHHH
Q 017844 259 EIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL----------D-AE-I-----------KHEVCH 315 (365)
Q Consensus 259 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~----------~-~~-~-----------~~~~~~ 315 (365)
+++++++.+ +..++...+..++..|.+|..|+..+.+++..-+ . .+ . ...+.+
T Consensus 205 ~l~dai~~~----~~~~A~~~l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~ 280 (326)
T PRK07452 205 QLADALLQG----NTGKALALLDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRK 280 (326)
T ss_pred HHHHHHHCC----CHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHH
Confidence 999999984 5566777788889999999999988888765410 1 11 0 011223
Q ss_pred HHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhccc
Q 017844 316 WAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRAN 357 (365)
Q Consensus 316 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 357 (365)
.+..|+.. +.+.+- .+.+..-..|++..+.. +|..++++|
T Consensus 281 ~~~~~s~~~L~~~l~--~L~~~D~~iK~g~~~~~~le~~i~~~~ 322 (326)
T PRK07452 281 EVQGLSSQQLLKLLP--LLLDLEASLKQGANPINALQDKLIELC 322 (326)
T ss_pred HHhcCCHHHHHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 34455544 333322 24445556677766666 888887776
No 132
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=5.6e-15 Score=121.86 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee-----
Q 017844 109 VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN----- 183 (365)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~----- 183 (365)
.++++++.+.... ...+ ++|++++.|+.+++|+|+++|||||.++.||++|+++.++++|++|||+.
T Consensus 41 ~iReii~~~~~~~-------~~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~ 112 (206)
T PRK08485 41 DAKEVIAEAYIAE-------SEEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQ 112 (206)
T ss_pred HHHHHHHHHhhCC-------CCcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccc
Confidence 4666666544322 1224 46889999999999999999999999999999999999999999999986
Q ss_pred --------EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844 184 --------IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (365)
Q Consensus 184 --------i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~ 236 (365)
+.|.+++.+++.+.|+. ..++++...+++.+.|++.+.|.+|+++.+.++..
T Consensus 113 ~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l 172 (206)
T PRK08485 113 KKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEEL 172 (206)
T ss_pred cccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 77999999999999998 67888888899999999999999999988776554
No 133
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.60 E-value=8.3e-14 Score=120.16 Aligned_cols=106 Identities=28% Similarity=0.320 Sum_probs=92.4
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCC-------------CcccHHHhccceeEEecCCCHHHHHHH
Q 017844 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS-------------SKVTEAIRSRCLNIRINSPTEEQIVKV 197 (365)
Q Consensus 131 ~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~-------------~~l~~~l~sR~~~i~~~~~~~~~~~~i 197 (365)
+.|+||||+|+|+-+.+..|.+.||.+-. ..+||++|.- ..+++.+.+|..+++-.+++.++++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~ia-PivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPIA-PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCCC-ceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 56999999999999999999999997643 4577777743 248899999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Q 017844 198 LEFIAKKEGLQLPSGFATRLAEK-SNRSLRRAILSFETCRV 237 (365)
Q Consensus 198 L~~~~~~~~~~i~~~~~~~i~~~-~~g~lr~ai~~l~~~~~ 237 (365)
++.+++.+|+.++++++..+++. +..++|.++++|.-+..
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~ 416 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASI 416 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHH
Confidence 99999999999999999999995 46799999999984433
No 134
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.60 E-value=4.9e-14 Score=144.43 Aligned_cols=184 Identities=19% Similarity=0.348 Sum_probs=123.8
Q ss_pred CccccCHHHHHHHHHHHHcC--------CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 13 DQVIVHQDIAQNLKKLVTEQ--------DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~--------~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
+.++||+++++.+...+... +..+ ++|+||+|+|||++|+++|+.+++.....+.++...| .... .
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~-~~~~----~ 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY-MEKH----T 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc-cccc----c
Confidence 45789999999998888531 2223 8999999999999999999998876555555554433 0000 0
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh------
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------ 157 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~------ 157 (365)
+ ...+.-.+.-.+..... .+...+. ..++.|+++||++.++++.++.|+++|++.
T Consensus 584 ~-------~~l~g~~~gyvg~~~~~---~l~~~~~---------~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~ 644 (821)
T CHL00095 584 V-------SKLIGSPPGYVGYNEGG---QLTEAVR---------KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK 644 (821)
T ss_pred H-------HHhcCCCCcccCcCccc---hHHHHHH---------hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCC
Confidence 0 00011011111111111 1222222 124589999999999999999999999973
Q ss_pred -----cCceeEEEEecCCCc-------------------------------------ccHHHhccc-eeEEecCCCHHHH
Q 017844 158 -----SASCRLILCCNSSSK-------------------------------------VTEAIRSRC-LNIRINSPTEEQI 194 (365)
Q Consensus 158 -----~~~~~~Il~t~~~~~-------------------------------------l~~~l~sR~-~~i~~~~~~~~~~ 194 (365)
-.++.||++||-... +.|.+.+|+ .++.|.+++.+++
T Consensus 645 g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l 724 (821)
T CHL00095 645 GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDV 724 (821)
T ss_pred CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHH
Confidence 246778888773210 335788898 6999999999999
Q ss_pred HHHHHHHHHH-------cC--CCCCHHHHHHHHHH
Q 017844 195 VKVLEFIAKK-------EG--LQLPSGFATRLAEK 220 (365)
Q Consensus 195 ~~iL~~~~~~-------~~--~~i~~~~~~~i~~~ 220 (365)
.+++...+.+ .| +.+++++.+.|++.
T Consensus 725 ~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~ 759 (821)
T CHL00095 725 WEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEE 759 (821)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHh
Confidence 9998776653 33 46889999999996
No 135
>PRK05907 hypothetical protein; Provisional
Probab=99.60 E-value=4.6e-13 Score=121.32 Aligned_cols=281 Identities=14% Similarity=0.169 Sum_probs=189.7
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (365)
...+...++.|+ |.++++|..- ....+.+...+..++. ..+++..+
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~--~~fdg~~~---------------------------- 52 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK--SEFDGQGL---------------------------- 52 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc--ceecCCCC----------------------------
Confidence 345556677888 7799999887 4455555444432221 11111111
Q ss_pred cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEE-EEecCCCc---ccHHH
Q 017844 102 AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLI-LCCNSSSK---VTEAI 177 (365)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~I-l~t~~~~~---l~~~l 177 (365)
...+++.. +...|+ .+.+++|++.+++.+.....+.|.++++++++.+.+| ++. ..+. +...+
T Consensus 53 -------~~~~ii~~-aetlPf----FaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i 119 (311)
T PRK05907 53 -------LQQELLSW-TEHFGL----FASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKL 119 (311)
T ss_pred -------CHHHHHHH-HhcCCc----ccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHH
Confidence 13344444 444444 6677899998887777666788999999998875555 444 3322 22334
Q ss_pred hccceeE----EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCC---CCCCCC--C
Q 017844 178 RSRCLNI----RINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQY---PFKDNQ--A 247 (365)
Q Consensus 178 ~sR~~~i----~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~~~---~~~~~~--~ 247 (365)
.. ...+ .|+++...++.+|+...++++|..+++++++.+++.+ +||+..+.+.+++++.+.+ .++.++ .
T Consensus 120 ~k-~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~ 198 (311)
T PRK05907 120 SS-ALCLSLFGEWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQS 198 (311)
T ss_pred hh-cceeccccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHH
Confidence 32 4444 8999999999999999999999999999999999999 6999999999999988833 354443 3
Q ss_pred CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHhCCHHHHHHHHH-HHHH----hh
Q 017844 248 IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLN-CVPPVVVLKRLLYELLKRLDAEIKHEVCH-WAAY----YV 321 (365)
Q Consensus 248 ~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~-~~~~~~il~~l~~~l~~~~~~~~~~~~~~-~~~~----~~ 321 (365)
+.....+..+|+++++++. ++..++...+.+|+.+ |.+|..|+..+.++++ +.-+...+-+. ...- |+
T Consensus 199 lv~~s~e~nIF~L~dai~~----~~~~~Al~il~~Ll~~~ge~p~~ILall~rQfl--~~~k~l~~~g~~~~~p~~vafs 272 (311)
T PRK05907 199 FVVKKEAASLWKLRDALLR----RDRVEGHSLLRSLLSDMGEDPLGIIAFLRSQCL--YGLRSIEEQSKERKHRIFVAYG 272 (311)
T ss_pred HhcCcccccHHHHHHHHHc----cCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--HHHHHHHHhcCCCCCCeEEEEC
Confidence 4556678899999999998 4567788889999999 9999999999999982 22221111100 0000 33
Q ss_pred hh-hHHHHhhhcccCCCCCcccc-ccccc-cccchhcccC
Q 017844 322 SI-SFQILFIVPLVDFPSPLECS-AQAAY-IQPPLIRANS 358 (365)
Q Consensus 322 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ 358 (365)
.. +.+.+.. +.+.....|++ .++.. +|..|++++.
T Consensus 273 ~~~L~~~~~~--l~~~D~~iKtg~~d~~~~lElli~~~~~ 310 (311)
T PRK05907 273 KERLLQALNL--LFYAESLIKNNVQDPILAVETLVIRMTN 310 (311)
T ss_pred HHHHHHHHHH--HHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 22 4454443 45555466665 45555 8999888764
No 136
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.60 E-value=3.3e-13 Score=125.54 Aligned_cols=225 Identities=14% Similarity=0.081 Sum_probs=160.3
Q ss_pred CCCceEEEEeCCCCCCHHHH----HHHHHHHhhhcC--ceeEEEEecCCC---cc---cHHHhccceeEEecCCCHHHHH
Q 017844 128 KRGFKVLVLNEVDKLSREAQ----HSLRRTMEKYSA--SCRLILCCNSSS---KV---TEAIRSRCLNIRINSPTEEQIV 195 (365)
Q Consensus 128 ~~~~~vliiDE~~~L~~~~~----~~Ll~~le~~~~--~~~~Il~t~~~~---~l---~~~l~sR~~~i~~~~~~~~~~~ 195 (365)
.++.++++|++++.+..... ..+...+ ++++ ...+++.++..+ ++ .+++.+++..+.+.+++..++.
T Consensus 74 F~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~ 152 (340)
T PRK05574 74 FSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELP 152 (340)
T ss_pred cccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHH
Confidence 56779999999998865422 2333334 3333 234444444433 23 5678888999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCCC--CCCCCCHHHHHHHHHHHHHhccChh
Q 017844 196 KVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY--PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPK 271 (365)
Q Consensus 196 ~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~--~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~ 271 (365)
.++...+.+.|+.+++++++.+++.++||++.+.+.+++++.+.+ .++.+. .+.....+..+++++++++.++
T Consensus 153 ~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~--- 229 (340)
T PRK05574 153 QWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGK--- 229 (340)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCC---
Confidence 999999999999999999999999999999999999999987753 244333 1223345567889999998853
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh---------------------CCHHHHHHHHHHHHHhhhh-hHHHHh
Q 017844 272 RLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR---------------------LDAEIKHEVCHWAAYYVSI-SFQILF 329 (365)
Q Consensus 272 ~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~---------------------~~~~~~~~~~~~~~~~~~~-~~~~~~ 329 (365)
...+...+..++.+|.+|..++..+..++..- +.+.....+.+.+..|+.. +.+.+.
T Consensus 230 -~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~L~~~l~ 308 (340)
T PRK05574 230 -IKRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQ 308 (340)
T ss_pred -HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHHHHHHHHH
Confidence 45566677888888999999999888876541 1122234455666667655 444433
Q ss_pred hhcccCCCCCcccc--ccccc-cccchhcccCC
Q 017844 330 IVPLVDFPSPLECS--AQAAY-IQPPLIRANSD 359 (365)
Q Consensus 330 ~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~ 359 (365)
.+.+.+...|++ .++.. +|..++++|..
T Consensus 309 --~L~~~d~~iK~~~~~~~~~~le~~ii~l~~~ 339 (340)
T PRK05574 309 --LLAETDYQIKTGYGGDKWLELELLLLKLAGA 339 (340)
T ss_pred --HHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Confidence 255666677776 46767 99999998864
No 137
>PRK05629 hypothetical protein; Validated
Probab=99.60 E-value=2.1e-13 Score=125.26 Aligned_cols=224 Identities=13% Similarity=0.098 Sum_probs=166.7
Q ss_pred CCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC---cccHHHhccceeEEecCCCHHHHHHHHHHHHHH
Q 017844 128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK 204 (365)
Q Consensus 128 ~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~---~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~ 204 (365)
.+++++|+++.++.......+.++..+.++++.+.+|+++.... ++..+++..+.++.+.++...++..|+...+++
T Consensus 62 F~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~ 141 (318)
T PRK05629 62 FGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKN 141 (318)
T ss_pred cCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHH
Confidence 66779999999877666667788999998888877888776443 244567777889999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHH
Q 017844 205 EGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLY 281 (365)
Q Consensus 205 ~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~ 281 (365)
.|.++++++++.+++.+++|+..+.+.+++++.+. +.++.++ .+.....+..+|+++++++.+ +..++...+.
T Consensus 142 ~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g----~~~~Al~~l~ 217 (318)
T PRK05629 142 HGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAG----QVSKAVASTR 217 (318)
T ss_pred cCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcC----CHHHHHHHHH
Confidence 99999999999999999999999999999988763 3455444 233445678899999999984 4566777788
Q ss_pred HHHHcCCChHHHHHHHHHH---HHHh------CC-----------HHHHHHHHHHHHHhhhh-hHHHHhhhcccCCCCCc
Q 017844 282 ELLLNCVPPVVVLKRLLYE---LLKR------LD-----------AEIKHEVCHWAAYYVSI-SFQILFIVPLVDFPSPL 340 (365)
Q Consensus 282 ~l~~~~~~~~~il~~l~~~---l~~~------~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 340 (365)
.++..|.+|..|+..+.++ +.+- .+ +--...+.+.+..|+.. +.+.+-. +.+.....
T Consensus 218 ~l~~~g~~pi~il~~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~--l~~~D~~~ 295 (318)
T PRK05629 218 RALQLGVSPVALAAALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVIL--MADLDAAV 295 (318)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHH--HHHHHHHh
Confidence 8999999999997777654 2221 11 11122345666667655 4433332 44444466
Q ss_pred cc-cccccc-cccchhccc
Q 017844 341 EC-SAQAAY-IQPPLIRAN 357 (365)
Q Consensus 341 ~~-~~~~~~-~~~~~~~~~ 357 (365)
|+ ...|.+ +|..++++.
T Consensus 296 K~~~~d~~~~lE~~i~~~~ 314 (318)
T PRK05629 296 KGQGGDPEFAIESAVRRVA 314 (318)
T ss_pred hCCCCCHHHHHHHHHHHHH
Confidence 65 558888 899888875
No 138
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.59 E-value=4.1e-14 Score=142.86 Aligned_cols=204 Identities=16% Similarity=0.211 Sum_probs=126.8
Q ss_pred CCcccccCCCCC---------C-ccccCHHHHHHHHHHHHc------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCc
Q 017844 1 MLWVDKYRPKTL---------D-QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE 64 (365)
Q Consensus 1 ~~w~~k~rP~~~---------~-~iig~~~~~~~l~~~l~~------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~ 64 (365)
+|| .++.+.++ + +++|.+.+++.+..++.. ...+.++|+||||+||||+++.+++.+..+ ..
T Consensus 301 ~pw-~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~-~~ 378 (784)
T PRK10787 301 VPW-NARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK-YV 378 (784)
T ss_pred CCC-CCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC-EE
Confidence 478 44555543 2 478999999988877652 233459999999999999999999966322 11
Q ss_pred cceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH
Q 017844 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR 144 (365)
Q Consensus 65 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~ 144 (365)
.+...+.. +. ..+.... ..+. +.... ..+..+... .....|++|||+|.+..
T Consensus 379 ~i~~~~~~----------d~--~~i~g~~-~~~~----g~~~G----~~~~~l~~~-------~~~~~villDEidk~~~ 430 (784)
T PRK10787 379 RMALGGVR----------DE--AEIRGHR-RTYI----GSMPG----KLIQKMAKV-------GVKNPLFLLDEIDKMSS 430 (784)
T ss_pred EEEcCCCC----------CH--HHhccch-hccC----CCCCc----HHHHHHHhc-------CCCCCEEEEEChhhccc
Confidence 11111100 00 0000000 0011 00111 111222211 11236999999999987
Q ss_pred HH----HHHHHHHHhhh---------------cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHH-
Q 017844 145 EA----QHSLRRTMEKY---------------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK- 204 (365)
Q Consensus 145 ~~----~~~Ll~~le~~---------------~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~- 204 (365)
.. +.+|+..++.- -.++.||+|+|.. .+++++++||.++.|.+++.++..++.++.+..
T Consensus 431 ~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k 509 (784)
T PRK10787 431 DMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPK 509 (784)
T ss_pred ccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHH
Confidence 64 58899999741 1456677767665 699999999999999999999999998877641
Q ss_pred ---------cCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHH
Q 017844 205 ---------EGLQLPSGFATRLAEKSN--RSLRRAILSFETC 235 (365)
Q Consensus 205 ---------~~~~i~~~~~~~i~~~~~--g~lr~ai~~l~~~ 235 (365)
..+.++++++..|++.+. -.+|.....+++.
T Consensus 510 ~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i 551 (784)
T PRK10787 510 QIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKL 551 (784)
T ss_pred HHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHH
Confidence 124688999999998532 2344444444443
No 139
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.59 E-value=2.9e-14 Score=146.05 Aligned_cols=202 Identities=15% Similarity=0.230 Sum_probs=139.5
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (365)
++-+...++.++|+++.++.+..++.....++++|+||||||||++++.+|..+........ ..+
T Consensus 171 ~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~-l~~-------------- 235 (821)
T CHL00095 171 KEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI-LED-------------- 235 (821)
T ss_pred HHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh-hcC--------------
Confidence 34456789999999999999999998777777999999999999999999998743221110 000
Q ss_pred cccccccccceecCCC------CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------HHHHHH
Q 017844 85 ELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHSL 150 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------~~~~~L 150 (365)
...+.+... .........++.+++.+.. .++.|+||||+|.+.. .+.+.|
T Consensus 236 -------~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~---------~~~~ILfiDEih~l~~~g~~~g~~~~a~lL 299 (821)
T CHL00095 236 -------KLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE---------NNNIILVIDEVHTLIGAGAAEGAIDAANIL 299 (821)
T ss_pred -------CeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh---------cCCeEEEEecHHHHhcCCCCCCcccHHHHh
Confidence 011111111 1111111134445554432 2346999999987743 234555
Q ss_pred HHHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHc
Q 017844 151 RRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----KEGLQLPSGFATRLAEKS 221 (365)
Q Consensus 151 l~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~----~~~~~i~~~~~~~i~~~~ 221 (365)
...+. ...+.+|.+|+..+ ...+++.+||..+.+..|+.++...+++.... ..++.++++++..++..+
T Consensus 300 kp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls 377 (821)
T CHL00095 300 KPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS 377 (821)
T ss_pred HHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 55555 24577888887654 36789999999999999999998888876543 346779999999999988
Q ss_pred CC---C---HHHHHHHHHHHHhcC
Q 017844 222 NR---S---LRRAILSFETCRVQQ 239 (365)
Q Consensus 222 ~g---~---lr~ai~~l~~~~~~~ 239 (365)
.| | +++|+.+|+.++...
T Consensus 378 ~~yi~~r~lPdkaidlld~a~a~~ 401 (821)
T CHL00095 378 DQYIADRFLPDKAIDLLDEAGSRV 401 (821)
T ss_pred hccCccccCchHHHHHHHHHHHHH
Confidence 75 3 778999999877653
No 140
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.59 E-value=1.1e-13 Score=142.33 Aligned_cols=200 Identities=18% Similarity=0.291 Sum_probs=134.2
Q ss_pred CccccCHHHHHHHHHHHHcC--------CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~--------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
..++||+.+++.+...+... +.. .++|+||+|+|||++|++++..+++.....+.+++..+ ...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~-~~~------ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEY-MEK------ 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhh-ccc------
Confidence 45899999999999888642 122 39999999999999999999988776555555555443 000
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----- 158 (365)
......+...+.-.+..... .+...+. . .++.|+++||++.++++.++.|+++|++..
T Consensus 638 -----~~~~~l~g~~~g~~g~~~~g---~l~~~v~-~--------~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~ 700 (852)
T TIGR03346 638 -----HSVARLIGAPPGYVGYEEGG---QLTEAVR-R--------KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQ 700 (852)
T ss_pred -----chHHHhcCCCCCccCccccc---HHHHHHH-c--------CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCC
Confidence 00000111111111111111 1222221 1 234799999999999999999999998742
Q ss_pred ------CceeEEEEecCCCc-------------------------ccHHHhccc-eeEEecCCCHHHHHHHHHHHHH---
Q 017844 159 ------ASCRLILCCNSSSK-------------------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAK--- 203 (365)
Q Consensus 159 ------~~~~~Il~t~~~~~-------------------------l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~--- 203 (365)
.++.||++||-... +.|.+..|+ .++.|.|++.+++.+++...+.
T Consensus 701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~ 780 (852)
T TIGR03346 701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLR 780 (852)
T ss_pred CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHH
Confidence 34558888775221 345677788 5899999999999999876554
Q ss_pred ----HcC--CCCCHHHHHHHHHH-c--CCCHHHHHHHHHHHH
Q 017844 204 ----KEG--LQLPSGFATRLAEK-S--NRSLRRAILSFETCR 236 (365)
Q Consensus 204 ----~~~--~~i~~~~~~~i~~~-~--~g~lr~ai~~l~~~~ 236 (365)
..| +.+++++++.|++. + .+++|...+.++...
T Consensus 781 ~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 781 KRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 222 57899999999996 3 588888888877654
No 141
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1e-13 Score=123.92 Aligned_cols=172 Identities=22% Similarity=0.259 Sum_probs=116.3
Q ss_pred CCCCccccCHHHHHHHHHHHH----------cCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 10 KTLDQVIVHQDIAQNLKKLVT----------EQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~----------~~~~~~--lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
-.|+|+.|..++++.|++++- ..+-|- +|++||||+|||.||+++|.+.. ..|
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~-----------tTF---- 273 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG-----------TTF---- 273 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc-----------CeE----
Confidence 468999999999999998762 333332 99999999999999999998631 111
Q ss_pred CCcceeccccccccccceecCC----CCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH---------
Q 017844 78 GSRNIDLELTTLSSANHVELSP----SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------- 144 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------- 144 (365)
+.+.. +.........++-+++....+. +.+|||||+|.|..
T Consensus 274 -----------------FNVSsstltSKwRGeSEKlvRlLFemARfyA---------PStIFiDEIDslcs~RG~s~EHE 327 (491)
T KOG0738|consen 274 -----------------FNVSSSTLTSKWRGESEKLVRLLFEMARFYA---------PSTIFIDEIDSLCSQRGGSSEHE 327 (491)
T ss_pred -----------------EEechhhhhhhhccchHHHHHHHHHHHHHhC---------CceeehhhHHHHHhcCCCccchh
Confidence 11111 2223333334555555444433 36999999998842
Q ss_pred ---HHHHHHHHHHhhhc-----CceeEEEE-ecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 017844 145 ---EAQHSLRRTMEKYS-----ASCRLILC-CNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (365)
Q Consensus 145 ---~~~~~Ll~~le~~~-----~~~~~Il~-t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~ 214 (365)
...+.||-.|+... ..++||++ ||.+..+++++++|+. .|.++-|+.+.....++..+..- ..-++-.+
T Consensus 328 aSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~-~~~~~~~~ 406 (491)
T KOG0738|consen 328 ASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSV-ELDDPVNL 406 (491)
T ss_pred HHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc-cCCCCccH
Confidence 24556777776432 23456665 5566799999999996 89999999999888888655432 22345557
Q ss_pred HHHHHHcCC
Q 017844 215 TRLAEKSNR 223 (365)
Q Consensus 215 ~~i~~~~~g 223 (365)
+.|++.++|
T Consensus 407 ~~lae~~eG 415 (491)
T KOG0738|consen 407 EDLAERSEG 415 (491)
T ss_pred HHHHHHhcC
Confidence 777776665
No 142
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.3e-14 Score=130.91 Aligned_cols=174 Identities=20% Similarity=0.282 Sum_probs=119.8
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
.+|+++-+.+++...|..++-. | ..|. +|++||||||||.+|+++|++- +.+|
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-----------g~NF--- 573 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-----------GANF--- 573 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-----------cCce---
Confidence 4799999999999988887742 1 2344 9999999999999999999964 2222
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----------H
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E 145 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----------~ 145 (365)
-.+..+..+.. +.......+++.+..... +.+.|||+||+|.|.+ .
T Consensus 574 ----------isVKGPELlNk----YVGESErAVR~vFqRAR~---------saPCVIFFDEiDaL~p~R~~~~s~~s~R 630 (802)
T KOG0733|consen 574 ----------ISVKGPELLNK----YVGESERAVRQVFQRARA---------SAPCVIFFDEIDALVPRRSDEGSSVSSR 630 (802)
T ss_pred ----------EeecCHHHHHH----HhhhHHHHHHHHHHHhhc---------CCCeEEEecchhhcCcccCCCCchhHHH
Confidence 11111111111 011122346666655443 3457999999999843 2
Q ss_pred HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 017844 146 AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAE 219 (365)
Q Consensus 146 ~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~-~~~~i~~ 219 (365)
..|.||.-|+.. ..++.+|.+||.++.+++++.+-. ..+.+..|+.++..+||+.+.+..+..++++ .++.|++
T Consensus 631 vvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 631 VVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred HHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence 456677666644 346778888999999999998754 3788899999999999999988655555544 3777776
Q ss_pred H
Q 017844 220 K 220 (365)
Q Consensus 220 ~ 220 (365)
.
T Consensus 711 ~ 711 (802)
T KOG0733|consen 711 N 711 (802)
T ss_pred c
Confidence 4
No 143
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.58 E-value=1.5e-13 Score=123.60 Aligned_cols=205 Identities=17% Similarity=0.185 Sum_probs=117.4
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (365)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
++..+...+...+..+. +.++++||+|+||||+++.+++.+.+.......+. .+.....+.. ..+. ..+.
T Consensus 27 ~~~~~~~~l~~~~~~~~-~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~------~~~~~~~~~l-~~i~--~~lG 96 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQRE-GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV------NTRVDAEDLL-RMVA--ADFG 96 (269)
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee------CCCCCHHHHH-HHHH--HHcC
Confidence 34556666666665432 23899999999999999999987643211100000 0000000000 0000 0011
Q ss_pred cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---cCceeEEEEecCCC--
Q 017844 97 LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---SASCRLILCCNSSS-- 171 (365)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---~~~~~~Il~t~~~~-- 171 (365)
+... +.......+.+...+.... ..++..+++|||++.++....+.|..+.+.. ...+.+++++....
T Consensus 97 ~~~~--~~~~~~~~~~l~~~l~~~~-----~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~ 169 (269)
T TIGR03015 97 LETE--GRDKAALLRELEDFLIEQF-----AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRE 169 (269)
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHH-----hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHH
Confidence 1111 1111111112211111111 1344579999999999988777665443321 12234455543211
Q ss_pred ----cccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844 172 ----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG----LQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 172 ----~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~----~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~ 238 (365)
.-...+.+|+ ..+++++++.+++.+++...+...| ..+++++++.|++.++|++|....+++.+...
T Consensus 170 ~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 170 TLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLS 245 (269)
T ss_pred HHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 1234577785 4889999999999999999887655 36899999999999999999988877766444
No 144
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.58 E-value=2.6e-14 Score=128.74 Aligned_cols=157 Identities=16% Similarity=0.184 Sum_probs=107.1
Q ss_pred CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHH
Q 017844 33 DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ 111 (365)
Q Consensus 33 ~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (365)
+.|. ++|+||||||||.+++++|+++..+ .+.+++.++ . +.........++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~---~i~vsa~eL---------------------~----sk~vGEsEk~IR 197 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE---PIVMSAGEL---------------------E----SENAGEPGKLIR 197 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC---eEEEEHHHh---------------------h----cCcCCcHHHHHH
Confidence 3444 9999999999999999999987432 122222111 1 111122334577
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-----------H-HHHHHHHHhh--------------hcCceeEEE
Q 017844 112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------A-QHSLRRTMEK--------------YSASCRLIL 165 (365)
Q Consensus 112 ~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-----------~-~~~Ll~~le~--------------~~~~~~~Il 165 (365)
+.+........ ..+.+.||+|||+|.+.+. . ...|+..++. ....+.+|.
T Consensus 198 ~~F~~A~~~a~----~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIa 273 (413)
T PLN00020 198 QRYREAADIIK----KKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIV 273 (413)
T ss_pred HHHHHHHHHhh----ccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEE
Confidence 77776654321 1346689999999976421 1 1356666553 234577899
Q ss_pred EecCCCcccHHHhc--cceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q 017844 166 CCNSSSKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS 224 (365)
Q Consensus 166 ~t~~~~~l~~~l~s--R~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~ 224 (365)
+||+++.+++++++ |+... +..|+.+++.+|++.++++.++ +...+..|+....|-
T Consensus 274 TTNrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 274 TGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQ 331 (413)
T ss_pred eCCCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCC
Confidence 99999999999999 77543 4579999999999998887654 578888899887764
No 145
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.7e-14 Score=134.19 Aligned_cols=205 Identities=19% Similarity=0.278 Sum_probs=131.3
Q ss_pred CcccccCCCCCC----------ccccCHHHHHHHHHHHHc----CCC--CeEEEECCCCCcHHHHHHHHHHHhcCCCCcc
Q 017844 2 LWVDKYRPKTLD----------QVIVHQDIAQNLKKLVTE----QDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEK 65 (365)
Q Consensus 2 ~w~~k~rP~~~~----------~iig~~~~~~~l~~~l~~----~~~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~ 65 (365)
|| .|+.+.+|+ +.+|-+++++++.+.+.= |.. +-++|+||||+|||++++.||+.|..... .
T Consensus 391 PW-gk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf-R 468 (906)
T KOG2004|consen 391 PW-GKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF-R 468 (906)
T ss_pred CC-CCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE-E
Confidence 56 555565553 668899999999988852 222 22999999999999999999998744321 1
Q ss_pred ceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-
Q 017844 66 VKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR- 144 (365)
Q Consensus 66 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~- 144 (365)
+.+.|.. ++ ..+..... .|...-.| .+-+.++... -...+++|||+|++..
T Consensus 469 fSvGG~t----------Dv--AeIkGHRR-TYVGAMPG-----kiIq~LK~v~----------t~NPliLiDEvDKlG~g 520 (906)
T KOG2004|consen 469 FSVGGMT----------DV--AEIKGHRR-TYVGAMPG-----KIIQCLKKVK----------TENPLILIDEVDKLGSG 520 (906)
T ss_pred Eeccccc----------cH--Hhhcccce-eeeccCCh-----HHHHHHHhhC----------CCCceEEeehhhhhCCC
Confidence 1111110 00 00111000 11111111 1223333332 2336899999999853
Q ss_pred ---HHHHHHHHHHhh-------------h--cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHH---
Q 017844 145 ---EAQHSLRRTMEK-------------Y--SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK--- 203 (365)
Q Consensus 145 ---~~~~~Ll~~le~-------------~--~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~--- 203 (365)
+-..+||+.|+- + -..+.||+++|..+.+++++++|..+|+++.+..++-.+|..+++-
T Consensus 521 ~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a 600 (906)
T KOG2004|consen 521 HQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQA 600 (906)
T ss_pred CCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHH
Confidence 234577877752 0 1357799999999999999999999999999999999998877653
Q ss_pred --H-----cCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH
Q 017844 204 --K-----EGLQLPSGFATRLAEKSN--RSLRRAILSFETCR 236 (365)
Q Consensus 204 --~-----~~~~i~~~~~~~i~~~~~--g~lr~ai~~l~~~~ 236 (365)
. +.++++++++..+.+... -.+|.+...+++++
T Consensus 601 ~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004|consen 601 LKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred HHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 346789999888877432 34565555555443
No 146
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.57 E-value=8.5e-13 Score=122.78 Aligned_cols=282 Identities=13% Similarity=0.097 Sum_probs=187.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHH
Q 017844 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE 112 (365)
Q Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (365)
..|.++|||+........++.+.+.+..+..... + . ..+...+... ...+
T Consensus 19 ~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~f--n--------------~----------~~~~~~e~~~----~~~~ 68 (343)
T PRK06585 19 KIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPF--A--------------V----------VRLDGDDLDA----DPAR 68 (343)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCc--c--------------e----------eeccHHHhhc----CHHH
Confidence 4445999999998888888888776533221100 0 0 1111111100 1234
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc---ccHHHh--ccceeEEec
Q 017844 113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK---VTEAIR--SRCLNIRIN 187 (365)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~---l~~~l~--sR~~~i~~~ 187 (365)
++.. +...++ .+.+++|++.+.+ ....+.|..+++.+++.+.+|+.+...++ +...+. .....+.+.
T Consensus 69 ~~~~-~~t~sl----F~~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~ 140 (343)
T PRK06585 69 LEDE-ANAISL----FGGRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCY 140 (343)
T ss_pred HHHH-HhCCCC----CCCceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecC
Confidence 4443 333443 5677899999654 34456788888887777777776654432 222221 234578899
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---CCCCCC--CCCCCCHHHHHHHHHH
Q 017844 188 SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY---PFKDNQ--AIPAMDWEEFVFEIAS 262 (365)
Q Consensus 188 ~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~---~~~~~~--~~~~~~~~~~i~~~~~ 262 (365)
+++..++..|+..++++.|+.+++++++.+++.++||++.+.+.+++++.+.+ .++.++ .+.....+..+|++++
T Consensus 141 ~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~d 220 (343)
T PRK06585 141 ADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAAD 220 (343)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999998853 355444 3445566788999999
Q ss_pred HHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----hC-----CH-------------HHHHHHHHHHHH
Q 017844 263 DIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-----RL-----DA-------------EIKHEVCHWAAY 319 (365)
Q Consensus 263 ~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-----~~-----~~-------------~~~~~~~~~~~~ 319 (365)
+++.+ +..++...+..++..|.+|..|+..+.+++.. .+ +. ..+..+.+.+..
T Consensus 221 ai~~~----~~~~a~~~l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 296 (343)
T PRK06585 221 AALAG----DLAAFERALDRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRR 296 (343)
T ss_pred HHHCC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHh
Confidence 99985 44556666788889999999999988887664 11 11 112234566666
Q ss_pred hhhh-hHHHHhhhcccCCCCCcccc-ccccc-cccchhcccC
Q 017844 320 YVSI-SFQILFIVPLVDFPSPLECS-AQAAY-IQPPLIRANS 358 (365)
Q Consensus 320 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ 358 (365)
|+.. +.+++-. +.+.+...|++ .++.+ ++..+++++.
T Consensus 297 ~s~~~L~~~l~~--l~~~d~~lK~~~~~~~~~le~~i~~~~~ 336 (343)
T PRK06585 297 WSLERLLRALER--LQAAELDCRRNPALADAIARRVLLSIAV 336 (343)
T ss_pred CCHHHHHHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 7655 3333332 44444444544 44455 8999888764
No 147
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=2.4e-13 Score=139.26 Aligned_cols=199 Identities=18% Similarity=0.319 Sum_probs=128.5
Q ss_pred CCccccCHHHHHHHHHHHHcC--------CC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844 12 LDQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (365)
Q Consensus 12 ~~~iig~~~~~~~l~~~l~~~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~ 82 (365)
++.++||+.+++.+...+... +. .+++|+||+|+|||++|+++++.+++.....+.+++..+ ..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~-~~------ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEF-ME------ 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHh-hh------
Confidence 456899999999888887632 11 238999999999999999999988765544455555433 00
Q ss_pred eccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----
Q 017844 83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---- 158 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---- 158 (365)
.......+...+...+.... ..+...... .++.|+++||++.+++..++.|+++|++..
T Consensus 640 -----~~~~~~LiG~~pgy~g~~~~----g~l~~~v~~--------~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~ 702 (857)
T PRK10865 640 -----KHSVSRLVGAPPGYVGYEEG----GYLTEAVRR--------RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG 702 (857)
T ss_pred -----hhhHHHHhCCCCcccccchh----HHHHHHHHh--------CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecC
Confidence 00000011111111111111 111111111 234799999999999999999999998641
Q ss_pred -------CceeEEEEecCCC-------------------------cccHHHhccc-eeEEecCCCHHHHHHHHHHHHHH-
Q 017844 159 -------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK- 204 (365)
Q Consensus 159 -------~~~~~Il~t~~~~-------------------------~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~- 204 (365)
.++.||++||-.. .+.|.+.+|+ .++.|.|++.+++.+++...+.+
T Consensus 703 ~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 703 QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 2345777877521 2457889999 79999999999999988776643
Q ss_pred ------cC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Q 017844 205 ------EG--LQLPSGFATRLAEKSN---RSLRRAILSFET 234 (365)
Q Consensus 205 ------~~--~~i~~~~~~~i~~~~~---g~lr~ai~~l~~ 234 (365)
.| +.+++++++.|++..- -..|..-+.++.
T Consensus 783 ~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~ 823 (857)
T PRK10865 783 YKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQ 823 (857)
T ss_pred HHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHH
Confidence 23 4679999999998542 134555444443
No 148
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.56 E-value=2.6e-13 Score=124.09 Aligned_cols=222 Identities=14% Similarity=0.150 Sum_probs=126.9
Q ss_pred CCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceeccccc
Q 017844 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTT 88 (365)
Q Consensus 12 ~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~ 88 (365)
|..++||++++..+...+-.....|++|.|++|+||||+++++++.+ .+..+.+. ..++.+|... |..| ..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~--r~ 76 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL-PEIKAVAG---CPFNSSPSDPEMMCEEV--RI 76 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh-cccccccC---CCCCCCCCCccccChHH--hh
Confidence 78899999999887666556666779999999999999999999854 22222111 1111222221 2222 11
Q ss_pred cc-----------cccceecCCC---CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844 89 LS-----------SANHVELSPS---DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154 (365)
Q Consensus 89 ~~-----------~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~l 154 (365)
.. ...+++ .+. +........+...+..-......+.-...+..++++||++.+++..|..|++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l 155 (337)
T TIGR02030 77 RVDSQEPLSIIKKPVPVVD-LPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVA 155 (337)
T ss_pred hhhcccccccccCCCCcCC-CCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHH
Confidence 00 001122 111 111111111111111100000001112234579999999999999999999999
Q ss_pred hhhc-----------CceeEEEEecC-CC--cccHHHhccce-eEEecCCCH-HHHHHHHHHHHH---------------
Q 017844 155 EKYS-----------ASCRLILCCNS-SS--KVTEAIRSRCL-NIRINSPTE-EQIVKVLEFIAK--------------- 203 (365)
Q Consensus 155 e~~~-----------~~~~~Il~t~~-~~--~l~~~l~sR~~-~i~~~~~~~-~~~~~iL~~~~~--------------- 203 (365)
++.. ...+|+++++. +. .+.+++.+|+. .+.+..++. ++..+++++...
T Consensus 156 ~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e 235 (337)
T TIGR02030 156 ASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTE 235 (337)
T ss_pred HhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhh
Confidence 7631 12334554443 32 58889999995 677777765 666666655211
Q ss_pred --------------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHhcCC
Q 017844 204 --------------KEGLQLPSGFATRLAEKS---NR-SLRRAILSFETCRVQQY 240 (365)
Q Consensus 204 --------------~~~~~i~~~~~~~i~~~~---~g-~lr~ai~~l~~~~~~~~ 240 (365)
-..+.+++++++++++.+ +. +.|..+.++..+.+.+.
T Consensus 236 ~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aa 290 (337)
T TIGR02030 236 QEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAA 290 (337)
T ss_pred hhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 134568888888887732 33 57888888876555443
No 149
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-13 Score=116.77 Aligned_cols=161 Identities=22% Similarity=0.361 Sum_probs=112.8
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
-++.++-|-+-.++.++++++- | ..|. +++|||||||||.+++++|+.- ....+.+.|.+|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~firvvgsef--- 225 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF--- 225 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHH---
Confidence 3677888877777777777641 2 2233 9999999999999999998842 223334444333
Q ss_pred CCCcceecccccccccccee-cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------H
Q 017844 77 AGSRNIDLELTTLSSANHVE-LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------R 144 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~ 144 (365)
+. +.. .....+++.++....+ .+.|++|||+|.+. .
T Consensus 226 ------------------vqkylg-----egprmvrdvfrlaken---------apsiifideidaiatkrfdaqtgadr 273 (408)
T KOG0727|consen 226 ------------------VQKYLG-----EGPRMVRDVFRLAKEN---------APSIIFIDEIDAIATKRFDAQTGADR 273 (408)
T ss_pred ------------------HHHHhc-----cCcHHHHHHHHHHhcc---------CCcEEEeehhhhHhhhhccccccccH
Confidence 11 111 1112466666655443 34799999999763 4
Q ss_pred HHHHHHHHHHhh-----hcCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCC
Q 017844 145 EAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQ 208 (365)
Q Consensus 145 ~~~~~Ll~~le~-----~~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~ 208 (365)
+.|..|+.++.. ...++++|++||..+.++|++.+-. ..|+|+-|+..+.+-+...+..+-++.
T Consensus 274 evqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 274 EVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred HHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 566677777764 3467999999999999999998754 379999999999988888888776654
No 150
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.56 E-value=2.4e-13 Score=123.97 Aligned_cols=228 Identities=15% Similarity=0.192 Sum_probs=124.0
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCcc-ceeccccceecCCCcceeccc
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGSRNIDLEL 86 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~-i~~~~~~~~~~~~~~~~~~~~ 86 (365)
.|..|++++||+++++.+...+-....+|++|+|+||+||||+++++++.+.+..... ..+++......|+...... .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~-~ 81 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSS-T 81 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccC-C
Confidence 5788999999999999887554333356799999999999999999999663322110 0000000000010000000 0
Q ss_pred ccccc-ccceec--CCCCcCccchhHHHHHHHHHHhcCCC---CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc--
Q 017844 87 TTLSS-ANHVEL--SPSDAGFQDRYVVQEVIKEMAKNRPI---DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-- 158 (365)
Q Consensus 87 ~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-- 158 (365)
..... ..+..+ ...+........+...+. ..... +.-......++++||++.+++..++.|++.|++..
T Consensus 82 ~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~---~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~ 158 (334)
T PRK13407 82 TMIERPTPVVDLPLGVTEDRVVGALDIERALT---RGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENV 158 (334)
T ss_pred cccccCCccccCCCCCCcceeecchhhhhhhh---cCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeE
Confidence 00000 000111 001111111111111111 11000 00012334699999999999999999999998642
Q ss_pred ---------CceeEEEEecC-C-C-cccHHHhccce-eEEecCCCH-HHHHHHHHHHHHH--------------------
Q 017844 159 ---------ASCRLILCCNS-S-S-KVTEAIRSRCL-NIRINSPTE-EQIVKVLEFIAKK-------------------- 204 (365)
Q Consensus 159 ---------~~~~~Il~t~~-~-~-~l~~~l~sR~~-~i~~~~~~~-~~~~~iL~~~~~~-------------------- 204 (365)
....|+++++. + + .+.+++.+||. .+.+.++.. ++..+++.+....
T Consensus 159 v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (334)
T PRK13407 159 VEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRG 238 (334)
T ss_pred EEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHH
Confidence 12334444433 2 2 58889999985 677777766 6666666553211
Q ss_pred ---------cCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcC
Q 017844 205 ---------EGLQLPSGFATRLAEKS----NRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 205 ---------~~~~i~~~~~~~i~~~~----~g~lr~ai~~l~~~~~~~ 239 (365)
..+.++++.++++++.+ ..+.|..+.++..+...+
T Consensus 239 ~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A 286 (334)
T PRK13407 239 RILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALA 286 (334)
T ss_pred HHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 23567777777777632 236777777666554443
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.2e-13 Score=136.08 Aligned_cols=197 Identities=19% Similarity=0.357 Sum_probs=133.3
Q ss_pred CccccCHHHHHHHHHHHHc-------CCCC--eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 13 DQVIVHQDIAQNLKKLVTE-------QDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~-------~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
..++||++++..+..+++. .+-| .++|.||+|+|||.+|+++|..|++.....+.++..+|+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E-------- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME-------- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH--------
Confidence 3578999999999998863 1222 3899999999999999999999998887778787766610
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----- 158 (365)
..+....+.-.|.-.|+.......+. .. ..++.|+++||+++-.++.++.|++.|++-.
T Consensus 563 ----kHsVSrLIGaPPGYVGyeeGG~LTEa----VR--------r~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 563 ----KHSVSRLIGAPPGYVGYEEGGQLTEA----VR--------RKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred ----HHHHHHHhCCCCCCceeccccchhHh----hh--------cCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCC
Confidence 00111111111111122221112121 22 2346899999999999999999999998632
Q ss_pred ------CceeEEEEecCCC----------------------------cccHHHhccce-eEEecCCCHHHHHHHHHHHHH
Q 017844 159 ------ASCRLILCCNSSS----------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK 203 (365)
Q Consensus 159 ------~~~~~Il~t~~~~----------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~ 203 (365)
.++.+|+|||--. .+.|.++.|+. +|.|.+++.+.+.+|+...+.
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHH
Confidence 3566788877221 14567778886 999999999999998776554
Q ss_pred -------HcCC--CCCHHHHHHHHHHcC---CCHHHHHHHHH
Q 017844 204 -------KEGL--QLPSGFATRLAEKSN---RSLRRAILSFE 233 (365)
Q Consensus 204 -------~~~~--~i~~~~~~~i~~~~~---g~lr~ai~~l~ 233 (365)
+.++ .+++++.++|++.+- ...|-+.+.++
T Consensus 707 ~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 707 RLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred HHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHH
Confidence 2344 678999999999642 23344444443
No 152
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2e-13 Score=133.49 Aligned_cols=217 Identities=18% Similarity=0.208 Sum_probs=141.9
Q ss_pred CCCCCccccCHHHHHHHHHHHH-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 9 PKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 9 P~~~~~iig~~~~~~~l~~~l~-----------~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
+-+|.|+.|.++++..|.+.+. .-++|. +||+||||||||.||+++|++.. ...+.+++.+
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg---VPF~svSGSE---- 379 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSVSGSE---- 379 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC---CceeeechHH----
Confidence 3579999999999998888774 235666 99999999999999999999752 2223333333
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------------
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------ 144 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------------ 144 (365)
++++.... ....+++++...... .+.|++|||+|.+..
T Consensus 380 -----------------FvE~~~g~----~asrvr~lf~~ar~~---------aP~iifideida~~~~r~G~~~~~~~~ 429 (774)
T KOG0731|consen 380 -----------------FVEMFVGV----GASRVRDLFPLARKN---------APSIIFIDEIDAVGRKRGGKGTGGGQD 429 (774)
T ss_pred -----------------HHHHhccc----chHHHHHHHHHhhcc---------CCeEEEecccccccccccccccCCCCh
Confidence 34322111 122466766654433 347999999987632
Q ss_pred H---HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhcc--c-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017844 145 E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216 (365)
Q Consensus 145 ~---~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~ 216 (365)
+ ..|.|+--|+.. ..++.++.+||.++-+++++++- + ..+.+..|+......|++.++.+.....++..+..
T Consensus 430 e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~ 509 (774)
T KOG0731|consen 430 EREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK 509 (774)
T ss_pred HHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH
Confidence 1 234444444433 34577777888888899999874 4 37999999999999999999887777656677777
Q ss_pred HHHHcCCCHHHH-HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHH
Q 017844 217 LAEKSNRSLRRA-ILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASD 263 (365)
Q Consensus 217 i~~~~~g~lr~a-i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 263 (365)
++..+.|....- .|+++.++..+..- ....+...+.+..+..++..
T Consensus 510 ~a~~t~gf~gadl~n~~neaa~~a~r~-~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 510 LASLTPGFSGADLANLCNEAALLAARK-GLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred HHhcCCCCcHHHHHhhhhHHHHHHHHh-ccCccchhhHHHHHHHHhcc
Confidence 998887755443 34444444333211 12234455555555544433
No 153
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.55 E-value=1.2e-12 Score=116.83 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=80.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhhhc----------------CceeEEEEecCCC-----cccHHHhccceeEEecCCC
Q 017844 132 KVLVLNEVDKLSREAQHSLRRTMEKYS----------------ASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPT 190 (365)
Q Consensus 132 ~vliiDE~~~L~~~~~~~Ll~~le~~~----------------~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~ 190 (365)
.++++||++.++++.++.|+..|++.. ++.++|+++|... .+.+++.+||..+.+..|+
T Consensus 107 ~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~ 186 (262)
T TIGR02640 107 FTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPD 186 (262)
T ss_pred CEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCC
Confidence 599999999999999999999997521 2456788888653 4688999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----------CCHHHHHHHHHHHHhcCC
Q 017844 191 EEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN----------RSLRRAILSFETCRVQQY 240 (365)
Q Consensus 191 ~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~----------g~lr~ai~~l~~~~~~~~ 240 (365)
.++..++++... .++++.++.+++... -.+|.++.+...+...+.
T Consensus 187 ~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~~ 241 (262)
T TIGR02640 187 IDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQDI 241 (262)
T ss_pred HHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcCC
Confidence 999999998754 356777777766321 137777777777766543
No 154
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.6e-13 Score=131.71 Aligned_cols=196 Identities=15% Similarity=0.203 Sum_probs=125.7
Q ss_pred ccccCHHHHHHHHHHHH------cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844 14 QVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (365)
Q Consensus 14 ~iig~~~~~~~l~~~l~------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (365)
+.+|-+++++++.+++. .-+.|-++|+||||+|||++++.||+.+..+.. .+.+.|..- . .
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv-R~sLGGvrD----------E--A 390 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV-RISLGGVRD----------E--A 390 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE-EEecCcccc----------H--H
Confidence 45788899988888774 122344999999999999999999998743321 111111100 0 0
Q ss_pred ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhh------
Q 017844 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTMEKY------ 157 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~----~~~~Ll~~le~~------ 157 (365)
.+.... -.|..+- .+ .++..+... .....|++|||+|.|+.+ -..+||..|+--
T Consensus 391 EIRGHR-RTYIGam----PG----rIiQ~mkka-------~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~ 454 (782)
T COG0466 391 EIRGHR-RTYIGAM----PG----KIIQGMKKA-------GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFS 454 (782)
T ss_pred Hhcccc-ccccccC----Ch----HHHHHHHHh-------CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchh
Confidence 000000 0011111 11 222222221 123469999999999643 346788888510
Q ss_pred ---------cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHH-----HHcC-----CCCCHHHHHHHH
Q 017844 158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIA-----KKEG-----LQLPSGFATRLA 218 (365)
Q Consensus 158 ---------~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~-----~~~~-----~~i~~~~~~~i~ 218 (365)
-.++.||.|+|..+.++.++++|..+|++..++.++-..|.++++ .+.| +.++++++..|+
T Consensus 455 DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI 534 (782)
T COG0466 455 DHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII 534 (782)
T ss_pred hccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence 146779999999999999999999999999999999998887655 2333 468999999998
Q ss_pred HHcC--CCHHHHHHHHHHHHhc
Q 017844 219 EKSN--RSLRRAILSFETCRVQ 238 (365)
Q Consensus 219 ~~~~--g~lr~ai~~l~~~~~~ 238 (365)
+... -.+|.+...+..+|..
T Consensus 535 ~~YTREAGVR~LeR~i~ki~RK 556 (782)
T COG0466 535 RYYTREAGVRNLEREIAKICRK 556 (782)
T ss_pred HHHhHhhhhhHHHHHHHHHHHH
Confidence 8532 3456655555555443
No 155
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.54 E-value=2.2e-13 Score=136.65 Aligned_cols=181 Identities=19% Similarity=0.296 Sum_probs=118.6
Q ss_pred ccccCHHHHHHHHHHHHc--------CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844 14 QVIVHQDIAQNLKKLVTE--------QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (365)
Q Consensus 14 ~iig~~~~~~~l~~~l~~--------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (365)
.++||+++++.+..++.. +++ .+++|+||+|||||++|+.+|+.+.+ ..+.+++..+.... .+
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~---~~i~id~se~~~~~-----~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI---ELLRFDMSEYMERH-----TV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC---CcEEeechhhcccc-----cH
Confidence 478999999999988862 222 24999999999999999999998732 23344443330000 00
Q ss_pred cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc------
Q 017844 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ 158 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~------ 158 (365)
...+...+.-.+......+.+ .+ . ..++.|+++||++.++++.++.|++.|++..
T Consensus 531 -------~~LiG~~~gyvg~~~~g~L~~---~v-~--------~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g 591 (758)
T PRK11034 531 -------SRLIGAPPGYVGFDQGGLLTD---AV-I--------KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNG 591 (758)
T ss_pred -------HHHcCCCCCcccccccchHHH---HH-H--------hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCC
Confidence 001111111111111111111 11 1 1234799999999999999999999998631
Q ss_pred -----CceeEEEEecCC-------------------------CcccHHHhccce-eEEecCCCHHHHHHHHHHHHH----
Q 017844 159 -----ASCRLILCCNSS-------------------------SKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK---- 203 (365)
Q Consensus 159 -----~~~~~Il~t~~~-------------------------~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~---- 203 (365)
.++.||++||.. ..+.|.+..|+. ++.|++++.+++.+++...+.
T Consensus 592 ~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~ 671 (758)
T PRK11034 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQA 671 (758)
T ss_pred ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 355688888722 025588889985 899999999999999876554
Q ss_pred ---HcCC--CCCHHHHHHHHHHc
Q 017844 204 ---KEGL--QLPSGFATRLAEKS 221 (365)
Q Consensus 204 ---~~~~--~i~~~~~~~i~~~~ 221 (365)
..|+ .++++++++|++..
T Consensus 672 ~l~~~~i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 672 QLDQKGVSLEVSQEARDWLAEKG 694 (758)
T ss_pred HHHHCCCCceECHHHHHHHHHhC
Confidence 2344 67899999999753
No 156
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.53 E-value=4e-13 Score=136.18 Aligned_cols=182 Identities=20% Similarity=0.306 Sum_probs=119.0
Q ss_pred CccccCHHHHHHHHHHHHcC--------CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~--------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
..++||+++++.+...+... ++. +++|+||+|||||++|+++|+.+.++ .+.+++.++ . +
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~---~~~~d~se~-~-------~ 522 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH---LERFDMSEY-M-------E 522 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC---eEEEeCchh-h-------h
Confidence 35789999999888887631 222 38999999999999999999977432 233333322 0 0
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----- 158 (365)
. ......+.-.+...+.... ..+...+ .. .++.|+++||++.+.++.++.|+++|++..
T Consensus 523 ~----~~~~~lig~~~gyvg~~~~---~~l~~~~-~~--------~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~ 586 (731)
T TIGR02639 523 K----HTVSRLIGAPPGYVGFEQG---GLLTEAV-RK--------HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNN 586 (731)
T ss_pred c----ccHHHHhcCCCCCcccchh---hHHHHHH-Hh--------CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCC
Confidence 0 0000001111111111111 1122222 21 234899999999999999999999998631
Q ss_pred ------CceeEEEEecCCC-------------------------cccHHHhccce-eEEecCCCHHHHHHHHHHHHHH--
Q 017844 159 ------ASCRLILCCNSSS-------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK-- 204 (365)
Q Consensus 159 ------~~~~~Il~t~~~~-------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~-- 204 (365)
.++.||++||-.. .+.|.+.+|+. ++.|.+++.+++.++++..+.+
T Consensus 587 g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~ 666 (731)
T TIGR02639 587 GRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELS 666 (731)
T ss_pred CcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 3455777776431 15678888984 8999999999999999877653
Q ss_pred -----cC--CCCCHHHHHHHHHHc
Q 017844 205 -----EG--LQLPSGFATRLAEKS 221 (365)
Q Consensus 205 -----~~--~~i~~~~~~~i~~~~ 221 (365)
.| +.++++++++|++.+
T Consensus 667 ~~l~~~~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 667 KQLNEKNIKLELTDDAKKYLAEKG 690 (731)
T ss_pred HHHHhCCCeEEeCHHHHHHHHHhC
Confidence 22 568899999999853
No 157
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.51 E-value=1.2e-12 Score=119.61 Aligned_cols=229 Identities=15% Similarity=0.201 Sum_probs=133.0
Q ss_pred ccCCC-CCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---c
Q 017844 6 KYRPK-TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---N 81 (365)
Q Consensus 6 k~rP~-~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~ 81 (365)
+-+|. .|++++||++++..|...+.+....+++|.||+|+||||+++.++..+.+...- .+..|+.+|... +
T Consensus 9 ~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~----~~~pf~~~p~~p~~~~ 84 (350)
T CHL00081 9 KERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVV----KDDPFNSHPSDPELMS 84 (350)
T ss_pred ccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCcc----CCCCCCCCCCChhhhc
Confidence 34555 799999999999999988888777789999999999999999998865432211 011221222211 1
Q ss_pred eecccccccc----------ccceecC--CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHH
Q 017844 82 IDLELTTLSS----------ANHVELS--PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHS 149 (365)
Q Consensus 82 ~~~~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~ 149 (365)
.++ +..... ...+.+. ..+........+...+.........+.-...+..++++||++.+++..|..
T Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~ 163 (350)
T CHL00081 85 DEV-REAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDI 163 (350)
T ss_pred hhh-hhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHH
Confidence 111 000000 0001100 011000111111111111000000001123345799999999999999999
Q ss_pred HHHHHhhhc-----------CceeEEEEecCC-C--cccHHHhccce-eEEecCCC-HHHHHHHHHHHHH----------
Q 017844 150 LRRTMEKYS-----------ASCRLILCCNSS-S--KVTEAIRSRCL-NIRINSPT-EEQIVKVLEFIAK---------- 203 (365)
Q Consensus 150 Ll~~le~~~-----------~~~~~Il~t~~~-~--~l~~~l~sR~~-~i~~~~~~-~~~~~~iL~~~~~---------- 203 (365)
|++.|++.. ...+|+++++.. . .+.+++.+|+. .+.+..++ .++..+++++...
T Consensus 164 LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~ 243 (350)
T CHL00081 164 LLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFRE 243 (350)
T ss_pred HHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhh
Confidence 999997621 123455555433 2 58899999985 78888887 4666666665321
Q ss_pred -------------------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHHhcC
Q 017844 204 -------------------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETCRVQQ 239 (365)
Q Consensus 204 -------------------~~~~~i~~~~~~~i~~~~---~-g~lr~ai~~l~~~~~~~ 239 (365)
-..+.++++.++++++.+ + -++|..+.++..+.+.+
T Consensus 244 ~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 244 KYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred hhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 024678888888887743 2 36888888877654443
No 158
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.50 E-value=1.6e-13 Score=137.94 Aligned_cols=202 Identities=20% Similarity=0.340 Sum_probs=141.6
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcC------------C--CCe--EEEECCCCCcHHHHHHHHHHHhcCCCCc
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ------------D--CPH--LLFYGPPGSGKKTLIMALLRQVFGPGAE 64 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~------------~--~~~--lll~Gp~G~GKTtla~~la~~l~~~~~~ 64 (365)
+.|.+||+|.+..++.|+......+..|++.. . ... ++++||+|+|||+.+.+.|+++.-.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~--- 384 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFK--- 384 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccc---
Confidence 36999999999999999877777777777532 1 111 4899999999999999999865211
Q ss_pred cceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCC---------CCCCCCCceEEE
Q 017844 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI---------DTKGKRGFKVLV 135 (365)
Q Consensus 65 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~vli 135 (365)
.++.++++.+... .+.+.+..+.....+ ........-||+
T Consensus 385 -----------------------------v~E~Nas~~RSk~--~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil 433 (871)
T KOG1968|consen 385 -----------------------------VVEKNASDVRSKK--ELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLIL 433 (871)
T ss_pred -----------------------------eeecCcccccccc--HHHhhhhccccccchhhhhcccccccccccceeEEE
Confidence 1222332222100 011111111100000 001223345999
Q ss_pred EeCCCCCCH---HHHHHHHHHHhhhcCceeEEEEecCCCccc-HHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844 136 LNEVDKLSR---EAQHSLRRTMEKYSASCRLILCCNSSSKVT-EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (365)
Q Consensus 136 iDE~~~L~~---~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~-~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~ 211 (365)
+||+|.+.. .....+-.++++ ....+|++||+..-.. .++.+-|..++|..|+.+.+...+..++..+++.+++
T Consensus 434 ~devD~~~~~dRg~v~~l~~l~~k--s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~ 511 (871)
T KOG1968|consen 434 MDEVDGMFGEDRGGVSKLSSLCKK--SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISD 511 (871)
T ss_pred EeccccccchhhhhHHHHHHHHHh--ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCc
Confidence 999999876 334455555553 3567999999877533 3566667899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844 212 GFATRLAEKSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 212 ~~~~~i~~~~~g~lr~ai~~l~~~~~~ 238 (365)
+.++.+...++||+|..++.|+.++..
T Consensus 512 ~~l~~~s~~~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 512 DVLEEISKLSGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred HHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence 999999999999999999999988554
No 159
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.50 E-value=1.3e-12 Score=128.39 Aligned_cols=209 Identities=17% Similarity=0.140 Sum_probs=132.1
Q ss_pred ccCCCCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 6 KYRPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 6 k~rP~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
+.+..+|+.++|+....+.+.+.++. ....+++|+|++||||+++|++|...........+.++|..+ +. ...+
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~---~~-~~~~ 264 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL---SE-TLLE 264 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC---CH-HHHH
Confidence 45566899999998888777776654 223349999999999999999998754333333344444322 00 0000
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----- 158 (365)
...+.... +.... +.....+.....+..+++|||++.|+...|..|++.+++..
T Consensus 265 --------~~lfg~~~---~~~~~----------~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 265 --------SELFGHEK---GAFTG----------AIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred --------HHHcCCCC---CccCC----------CCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECC
Confidence 00000000 00000 00000000012234689999999999999999999998632
Q ss_pred ------CceeEEEEecCCC-------cccHHHhccce--eEEecCCC--HHHHHHHHHHHHHH----cC--CCCCHHHHH
Q 017844 159 ------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIAKK----EG--LQLPSGFAT 215 (365)
Q Consensus 159 ------~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~iL~~~~~~----~~--~~i~~~~~~ 215 (365)
.++++|++|+... .+.+.+..|+. .|.++|+. .+++..++...+.+ .+ ..+++++++
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~ 403 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR 403 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 2467888876542 35567777764 57777776 45666665555442 22 578999999
Q ss_pred HHHHH-cCCCHHHHHHHHHHHHhcC
Q 017844 216 RLAEK-SNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 216 ~i~~~-~~g~lr~ai~~l~~~~~~~ 239 (365)
.+.+. +.||+|++.+.++.++..+
T Consensus 404 ~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 404 VLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC
Confidence 99996 6999999999999887653
No 160
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.48 E-value=7.7e-13 Score=116.34 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=138.4
Q ss_pred ceeEEEEecCCC--cccHHHhccceeEEecCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHH
Q 017844 160 SCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE------GLQLPSGFATRLAEKSNRSLRRAILS 231 (365)
Q Consensus 160 ~~~~Il~t~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~------~~~i~~~~~~~i~~~~~g~lr~ai~~ 231 (365)
.+.+|.+|+..+ .+.++|+|||+++.|.+++.+++..+|++.+..+ .+.+++++++.|++.++||.|.|+|.
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~ 87 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNL 87 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHH
Confidence 456666666554 5889999999999999999999999999988742 36799999999999999999999999
Q ss_pred HHHHHhcCC---C--CCCCC--------CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 017844 232 FETCRVQQY---P--FKDNQ--------AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLL 298 (365)
Q Consensus 232 l~~~~~~~~---~--~~~~~--------~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~ 298 (365)
||.++.... . ++.+. .+......+.-++++++..++-+..+-+.+.=++-.++..|.+|..|.+.+.
T Consensus 88 LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLi 167 (300)
T PRK14700 88 LERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRML 167 (300)
T ss_pred HHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999654211 1 11111 0001111233456666666655555666777777788899999999999888
Q ss_pred HHHHHhCC---HHHHHHHHHHHHHhh----hhhHHHHhhhcccCCCCCccccccccc--cccchhcccCCCcccC
Q 017844 299 YELLKRLD---AEIKHEVCHWAAYYV----SISFQILFIVPLVDFPSPLECSAQAAY--IQPPLIRANSDPVALH 364 (365)
Q Consensus 299 ~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 364 (365)
..-.+.+. +.........+..++ .+-...|.++.+.-..+||.|++-.++ ....+=.-...||++|
T Consensus 168 i~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y~A~~~A~~~v~~~~~~~VP~h 242 (300)
T PRK14700 168 CIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDVPQH 242 (300)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhcCCCCCChh
Confidence 87777543 333333333332222 222455565544445799999998888 2222333356778887
No 161
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.48 E-value=5.5e-12 Score=108.07 Aligned_cols=189 Identities=20% Similarity=0.281 Sum_probs=125.0
Q ss_pred ccCCCCCCccccCHHHHHHHHH----HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 6 KYRPKTLDQVIVHQDIAQNLKK----LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 6 k~rP~~~~~iig~~~~~~~l~~----~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
...|..+++++|-+..++.|.. .+++....|+|++|++|||||++++++..++....-..
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRl---------------- 83 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRL---------------- 83 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceE----------------
Confidence 3456789999997766655544 44344444599999999999999999998764433211
Q ss_pred eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHh----h
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-SREAQHSLRRTME----K 156 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L-~~~~~~~Ll~~le----~ 156 (365)
+++...+.. .+.+++..+... ..+-||++|+...= .......|..+|| .
T Consensus 84 -------------Iev~k~~L~-----~l~~l~~~l~~~--------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~ 137 (249)
T PF05673_consen 84 -------------IEVSKEDLG-----DLPELLDLLRDR--------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEA 137 (249)
T ss_pred -------------EEECHHHhc-----cHHHHHHHHhcC--------CCCEEEEecCCCCCCCcHHHHHHHHHhcCcccc
Confidence 222222221 133555554432 23469999997432 2334455555554 4
Q ss_pred hcCceeEEEEecCCCccc-----------------------HHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCH-
Q 017844 157 YSASCRLILCCNSSSKVT-----------------------EAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS- 211 (365)
Q Consensus 157 ~~~~~~~Il~t~~~~~l~-----------------------~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~- 211 (365)
.|.|+.+..|+|...-+. -++.+|| ..+.|.+|+.++-.++++..+.+.|+.+++
T Consensus 138 ~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e 217 (249)
T PF05673_consen 138 RPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEE 217 (249)
T ss_pred CCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 577777777777433111 1445676 489999999999999999999999999985
Q ss_pred ----HHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844 212 ----GFATRLAEKSNRSLRRAILSFETCR 236 (365)
Q Consensus 212 ----~~~~~i~~~~~g~lr~ai~~l~~~~ 236 (365)
+++..-....+.+.|.|-..++.+.
T Consensus 218 ~l~~~Al~wa~~rg~RSGRtA~QF~~~l~ 246 (249)
T PF05673_consen 218 ELRQEALQWALRRGGRSGRTARQFIDDLA 246 (249)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4455555566679999988877664
No 162
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1e-12 Score=111.80 Aligned_cols=175 Identities=19% Similarity=0.320 Sum_probs=117.8
Q ss_pred CCCCccccCHHHHHHHHHHHH-----------cC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
.+++++-|-+..++.|.+++- -| +.|. +++|||||+|||.+||+.|..-.. .|
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a-----------TF--- 233 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA-----------TF--- 233 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc-----------hH---
Confidence 478888898888888877762 12 2233 999999999999999999875311 11
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HH
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE 145 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~ 145 (365)
-.+..++.+.+...+. ...+++.+.-.. ...+.|++|||+|.+. .+
T Consensus 234 ----------LKLAgPQLVQMfIGdG----AkLVRDAFaLAK---------EkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 234 ----------LKLAGPQLVQMFIGDG----AKLVRDAFALAK---------EKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred ----------HHhcchHHHhhhhcch----HHHHHHHHHHhh---------ccCCeEEEEechhhhccccccccccccHH
Confidence 2222233333222111 112344333222 3456899999999773 45
Q ss_pred HHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844 146 AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (365)
Q Consensus 146 ~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i 217 (365)
.|..++.+|+.. ...+++|.+||..+-++|++.+.. ..|+|+-|+.+...++++-+.++-++. ++--++.+
T Consensus 291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeEL 369 (424)
T KOG0652|consen 291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEEL 369 (424)
T ss_pred HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHH
Confidence 677777777653 346889999999999999987654 379999999999999999887766553 33347777
Q ss_pred HHHcC
Q 017844 218 AEKSN 222 (365)
Q Consensus 218 ~~~~~ 222 (365)
++.++
T Consensus 370 aRsTd 374 (424)
T KOG0652|consen 370 ARSTD 374 (424)
T ss_pred hhccc
Confidence 77654
No 163
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.1e-13 Score=117.98 Aligned_cols=176 Identities=22% Similarity=0.278 Sum_probs=116.6
Q ss_pred CCCccccCHHHHHHHHHHH----------HcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844 11 TLDQVIVHQDIAQNLKKLV----------TEQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l----------~~~~~~~--lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~ 78 (365)
.|+++.|-+.+++.|++++ ..++.|- +||+||||+|||-||+++|.+... .|
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-----------TF----- 194 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-----------TF----- 194 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-----------ce-----
Confidence 6999999999999999876 2344443 999999999999999999986521 11
Q ss_pred CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-------H----HH
Q 017844 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------E----AQ 147 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-------~----~~ 147 (365)
..+++.+.+. ..-......+.+++.... .+++.||+|||+|.+.. + ..
T Consensus 195 --------FSvSSSDLvS----KWmGESEkLVknLFemAR---------e~kPSIIFiDEiDslcg~r~enEseasRRIK 253 (439)
T KOG0739|consen 195 --------FSVSSSDLVS----KWMGESEKLVKNLFEMAR---------ENKPSIIFIDEIDSLCGSRSENESEASRRIK 253 (439)
T ss_pred --------EEeehHHHHH----HHhccHHHHHHHHHHHHH---------hcCCcEEEeehhhhhccCCCCCchHHHHHHH
Confidence 1111111111 011112223444444433 34568999999998842 1 12
Q ss_pred HHHHHHHhhh---cCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 017844 148 HSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR 223 (365)
Q Consensus 148 ~~Ll~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g 223 (365)
..|+-.|... ...+.++.+||-+..++.+|++|+. .|.++-|.........+-.+..-...+++..+..+++.++|
T Consensus 254 TEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 254 TEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred HHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCC
Confidence 2344444432 2335556677777889999999996 88998888887777776655544556889999999998766
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.46 E-value=7.3e-13 Score=105.53 Aligned_cols=115 Identities=26% Similarity=0.350 Sum_probs=77.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (365)
++|+||||+|||++++.+++.+. ...+.+++... . +.........+.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~~---------------------~----~~~~~~~~~~i~~~~~~ 52 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSEL---------------------I----SSYAGDSEQKIRDFFKK 52 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTHH---------------------H----TSSTTHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---ccccccccccc---------------------c----ccccccccccccccccc
Confidence 68999999999999999999762 11122222111 0 00111122234455554
Q ss_pred HHhcCCCCCCCCCCceEEEEeCCCCCCHHH-----------HHHHHHHHhhhcC---ceeEEEEecCCCcccHHHh-ccc
Q 017844 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREA-----------QHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIR-SRC 181 (365)
Q Consensus 117 ~~~~~~~~~~~~~~~~vliiDE~~~L~~~~-----------~~~Ll~~le~~~~---~~~~Il~t~~~~~l~~~l~-sR~ 181 (365)
..... ++.|++|||+|.+.... .+.|+..++.... ++.+|++||..+.+++++. +||
T Consensus 53 ~~~~~--------~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf 124 (132)
T PF00004_consen 53 AKKSA--------KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRF 124 (132)
T ss_dssp HHHTS--------TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTS
T ss_pred ccccc--------cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCC
Confidence 43321 35899999999997765 6788888887654 4889999999999999999 998
Q ss_pred e-eEEec
Q 017844 182 L-NIRIN 187 (365)
Q Consensus 182 ~-~i~~~ 187 (365)
. .++|+
T Consensus 125 ~~~i~~~ 131 (132)
T PF00004_consen 125 DRRIEFP 131 (132)
T ss_dssp EEEEEE-
T ss_pred cEEEEcC
Confidence 6 56654
No 165
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.46 E-value=2.2e-12 Score=131.15 Aligned_cols=180 Identities=18% Similarity=0.280 Sum_probs=118.8
Q ss_pred CCCCCccccCHHHHHHHHHHHHc-----------C-CC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee
Q 017844 9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (365)
Q Consensus 9 P~~~~~iig~~~~~~~l~~~l~~-----------~-~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~ 75 (365)
..+|+++.|.+.+++.++.++.. + .. .+++|+||||||||++++++++++..+ .+.+++..+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~---~i~i~~~~i-- 248 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY---FISINGPEI-- 248 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe---EEEEecHHH--
Confidence 35899999999999988887742 1 12 239999999999999999999976321 122222111
Q ss_pred cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------H
Q 017844 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------R 144 (365)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~ 144 (365)
. +.........+++++..... ..+.|++|||+|.+. .
T Consensus 249 -------------------~----~~~~g~~~~~l~~lf~~a~~---------~~p~il~iDEid~l~~~r~~~~~~~~~ 296 (733)
T TIGR01243 249 -------------------M----SKYYGESEERLREIFKEAEE---------NAPSIIFIDEIDAIAPKREEVTGEVEK 296 (733)
T ss_pred -------------------h----cccccHHHHHHHHHHHHHHh---------cCCcEEEeehhhhhcccccCCcchHHH
Confidence 0 00001111234444444332 234799999998764 2
Q ss_pred HHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 017844 145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLA 218 (365)
Q Consensus 145 ~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~-~~~~~~i~ 218 (365)
..++.|+..++.... .+.+|.+||.++.+++++++ |+ ..+.|+.|+.++..++++.... +..+. +..++.++
T Consensus 297 ~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la 374 (733)
T TIGR01243 297 RVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLA 374 (733)
T ss_pred HHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHH
Confidence 356678888876533 35566678888889999887 55 4799999999999999996554 33332 44578888
Q ss_pred HHcCCCHHH
Q 017844 219 EKSNRSLRR 227 (365)
Q Consensus 219 ~~~~g~lr~ 227 (365)
+.+.|-...
T Consensus 375 ~~t~G~~ga 383 (733)
T TIGR01243 375 EVTHGFVGA 383 (733)
T ss_pred HhCCCCCHH
Confidence 888775443
No 166
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.4e-12 Score=108.94 Aligned_cols=183 Identities=19% Similarity=0.290 Sum_probs=117.2
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHc-----------C--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~ 69 (365)
.++|-.-.+++-+-|-+...+.+++.++- | ....+++|||||+|||.+|++++..-.|. .+.++
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~---firvs 213 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---FIRVS 213 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceE---EEEec
Confidence 35665555565556667778888887741 1 12229999999999999999999853221 11111
Q ss_pred cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-------
Q 017844 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL------- 142 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L------- 142 (365)
|.+. +. .+-......+++++-..... .+.|+++||+|.+
T Consensus 214 gsel---------------------vq----k~igegsrmvrelfvmareh---------apsiifmdeidsigs~r~e~ 259 (404)
T KOG0728|consen 214 GSEL---------------------VQ----KYIGEGSRMVRELFVMAREH---------APSIIFMDEIDSIGSSRVES 259 (404)
T ss_pred hHHH---------------------HH----HHhhhhHHHHHHHHHHHHhc---------CCceEeeecccccccccccC
Confidence 1111 10 00001122355655544433 3479999999987
Q ss_pred ----CHHHHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCC
Q 017844 143 ----SREAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (365)
Q Consensus 143 ----~~~~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~ 210 (365)
+.+.|..++.+++.. ..++++|++||..+-+++++.+-. ..|+|++|+.+...++|+-+.++-++. -
T Consensus 260 ~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-r 338 (404)
T KOG0728|consen 260 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-R 338 (404)
T ss_pred CCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-c
Confidence 346677777777643 467899999999999999998754 379999999999999998776654331 0
Q ss_pred HHHHHHHHHHcCC
Q 017844 211 SGFATRLAEKSNR 223 (365)
Q Consensus 211 ~~~~~~i~~~~~g 223 (365)
--.+..||+.-.|
T Consensus 339 gi~l~kiaekm~g 351 (404)
T KOG0728|consen 339 GINLRKIAEKMPG 351 (404)
T ss_pred ccCHHHHHHhCCC
Confidence 0014555554443
No 167
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.8e-12 Score=115.76 Aligned_cols=186 Identities=24% Similarity=0.292 Sum_probs=118.0
Q ss_pred CCCCccccCHHHHHHHHHHHH----------cC---CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee
Q 017844 10 KTLDQVIVHQDIAQNLKKLVT----------EQ---DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~----------~~---~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~ 75 (365)
.+|+|+-|-+.+++.+++.+- .+ +.+ .+|++||||||||.+|+++|++..+.. +++.+.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f---Inv~~s---- 161 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANF---INVSVS---- 161 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCc---ceeecc----
Confidence 368999999999999998762 11 112 399999999999999999999763322 111111
Q ss_pred cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-------HH--
Q 017844 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------EA-- 146 (365)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-------~~-- 146 (365)
.+.+.. ++ .-+.+.+.+-. ++..-.+.+++|||++.+.. ++
T Consensus 162 ------------~lt~KW--------fg-----E~eKlv~AvFs-----lAsKl~P~iIFIDEvds~L~~R~s~dHEa~a 211 (386)
T KOG0737|consen 162 ------------NLTSKW--------FG-----EAQKLVKAVFS-----LASKLQPSIIFIDEVDSFLGQRRSTDHEATA 211 (386)
T ss_pred ------------ccchhh--------HH-----HHHHHHHHHHh-----hhhhcCcceeehhhHHHHHhhcccchHHHHH
Confidence 001000 01 01112222111 11233568999999986631 11
Q ss_pred --HHHHHHHHhh----hcCceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017844 147 --QHSLRRTMEK----YSASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219 (365)
Q Consensus 147 --~~~Ll~~le~----~~~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~ 219 (365)
.+.|.-.-+. ....+.+..+||.+..+++++.+|+ .+++++-|+.++..+||+-+++.+.++ ++-.+..++.
T Consensus 212 ~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~ 290 (386)
T KOG0737|consen 212 MMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQ 290 (386)
T ss_pred HHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHH
Confidence 1122222222 1223556667888999999999996 589999999999999999999988876 4556888888
Q ss_pred HcCCC-HHHHHHHHH
Q 017844 220 KSNRS-LRRAILSFE 233 (365)
Q Consensus 220 ~~~g~-lr~ai~~l~ 233 (365)
.++|- -++..+++.
T Consensus 291 ~t~GySGSDLkelC~ 305 (386)
T KOG0737|consen 291 MTEGYSGSDLKELCR 305 (386)
T ss_pred hcCCCcHHHHHHHHH
Confidence 88773 333333333
No 168
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.7e-12 Score=124.83 Aligned_cols=188 Identities=20% Similarity=0.272 Sum_probs=123.7
Q ss_pred CCCCccccCHHHHHHHHHHHH-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 10 KTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~-----------~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
.+|+|+.|.++++..+.+.+. ++++|. ++++||||+|||.+|+++|++..-|.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF--------------- 211 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF--------------- 211 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc---------------
Confidence 479999999999988887764 246666 99999999999999999998652221
Q ss_pred CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-------------
Q 017844 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------- 144 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------------- 144 (365)
...+..+++++-..- ....+|+++....... +.|++|||+|.+..
T Consensus 212 ---------f~iSGS~FVemfVGv----GAsRVRdLF~qAkk~a---------P~IIFIDEiDAvGr~Rg~g~Gggnder 269 (596)
T COG0465 212 ---------FSISGSDFVEMFVGV----GASRVRDLFEQAKKNA---------PCIIFIDEIDAVGRQRGAGLGGGNDER 269 (596)
T ss_pred ---------eeccchhhhhhhcCC----CcHHHHHHHHHhhccC---------CCeEEEehhhhcccccCCCCCCCchHH
Confidence 223333444433221 1124677777655433 37999999997742
Q ss_pred -HHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017844 145 -EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (365)
Q Consensus 145 -~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~ 218 (365)
...|.|+-.|+-... .+.++..||.++-+++++.+ |+ ..+.++.|+.....++++-++++..+. ++-.+..++
T Consensus 270 EQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iA 348 (596)
T COG0465 270 EQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIA 348 (596)
T ss_pred HHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHh
Confidence 245566666665543 35555567777778888865 33 479999999999999999777655443 222244477
Q ss_pred HHcCCCH-HHHHHHHHHH
Q 017844 219 EKSNRSL-RRAILSFETC 235 (365)
Q Consensus 219 ~~~~g~l-r~ai~~l~~~ 235 (365)
+.+.|-. -...|++..+
T Consensus 349 r~tpGfsGAdL~nl~NEA 366 (596)
T COG0465 349 RGTPGFSGADLANLLNEA 366 (596)
T ss_pred hhCCCcccchHhhhHHHH
Confidence 7665532 2334444433
No 169
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.45 E-value=2.1e-12 Score=128.72 Aligned_cols=192 Identities=18% Similarity=0.276 Sum_probs=123.6
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHc-----------CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844 7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (365)
Q Consensus 7 ~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~ 74 (365)
....+|+++.|.+..+..+...+.. +..+. ++|+||||+|||++++++++++..+ .+.+++..+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~---f~~is~~~~- 221 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDF- 221 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC---EEEEehHHh-
Confidence 3446788999988888777665531 23333 9999999999999999999976322 111222111
Q ss_pred ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----------
Q 017844 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------- 144 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~---------- 144 (365)
..... + .....+++.+..... ..+.|++|||+|.+..
T Consensus 222 --------------------~~~~~---g-~~~~~~~~~f~~a~~---------~~P~IifIDEiD~l~~~r~~~~~g~~ 268 (644)
T PRK10733 222 --------------------VEMFV---G-VGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAGLGGGH 268 (644)
T ss_pred --------------------HHhhh---c-ccHHHHHHHHHHHHh---------cCCcEEEehhHhhhhhccCCCCCCCc
Confidence 11000 0 111134444444322 2457999999998732
Q ss_pred ----HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017844 145 ----EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (365)
Q Consensus 145 ----~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~ 215 (365)
...+.|+..|+... ..+.+|.+||.++.+++++++ |+ ..+.|+.|+.+++.++++.++.+..+. ++..+.
T Consensus 269 ~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~ 347 (644)
T PRK10733 269 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAA 347 (644)
T ss_pred hHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHH
Confidence 13345555565443 346788889999999999986 77 489999999999999999988765432 122356
Q ss_pred HHHHHcCC----CHHHHHHHHHHHH
Q 017844 216 RLAEKSNR----SLRRAILSFETCR 236 (365)
Q Consensus 216 ~i~~~~~g----~lr~ai~~l~~~~ 236 (365)
.+++.+.| |+..+++..-..+
T Consensus 348 ~la~~t~G~sgadl~~l~~eAa~~a 372 (644)
T PRK10733 348 IIARGTPGFSGADLANLVNEAALFA 372 (644)
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHHH
Confidence 78887777 6666665544433
No 170
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.44 E-value=3.4e-12 Score=103.28 Aligned_cols=137 Identities=29% Similarity=0.416 Sum_probs=88.5
Q ss_pred ccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccce
Q 017844 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (365)
Q Consensus 16 ig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (365)
+|++..+..+...+......+++++||+|+|||++++.+++.+.......+.+++..+
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~---------------------- 58 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL---------------------- 58 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh----------------------
Confidence 3677888888888876555669999999999999999999976422222122211110
Q ss_pred ecCCCCcCccchhHHHHHHH----HHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh------cCceeEEE
Q 017844 96 ELSPSDAGFQDRYVVQEVIK----EMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------SASCRLIL 165 (365)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~------~~~~~~Il 165 (365)
.... ....... ....... ...+..++++||++.+.......++..++.. ..++.+|+
T Consensus 59 -------~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~ 125 (151)
T cd00009 59 -------LEGL--VVAELFGHFLVRLLFELA----EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIG 125 (151)
T ss_pred -------hhhh--HHHHHhhhhhHhHHHHhh----ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEE
Confidence 0000 0000000 0000000 1235589999999998777778888888875 35678888
Q ss_pred EecCCC--cccHHHhccc-eeEEec
Q 017844 166 CCNSSS--KVTEAIRSRC-LNIRIN 187 (365)
Q Consensus 166 ~t~~~~--~l~~~l~sR~-~~i~~~ 187 (365)
+++... .+.+.+.+|+ ..+.++
T Consensus 126 ~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 126 ATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ecCccccCCcChhHHhhhccEeecC
Confidence 888777 6888999999 566665
No 171
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.44 E-value=4.2e-12 Score=119.27 Aligned_cols=176 Identities=20% Similarity=0.261 Sum_probs=105.1
Q ss_pred cccCHHHHHHHHHHHHc-------C---------CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844 15 VIVHQDIAQNLKKLVTE-------Q---------DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (365)
Q Consensus 15 iig~~~~~~~l~~~l~~-------~---------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~ 78 (365)
++||+++++.+..++.. + ...+++|+||+|||||++|+.+++.+..+. +.+++..+
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf---~~id~~~l----- 144 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF---AIADATTL----- 144 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc---eecchhhc-----
Confidence 78999999988766521 1 124599999999999999999998763321 11111110
Q ss_pred CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------------
Q 017844 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------- 144 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-------------- 144 (365)
....+... .+...+..+........ ....+.|++|||+|.++.
T Consensus 145 -------------------~~~gyvG~---d~e~~l~~l~~~~~~~~-~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~ 201 (412)
T PRK05342 145 -------------------TEAGYVGE---DVENILLKLLQAADYDV-EKAQRGIVYIDEIDKIARKSENPSITRDVSGE 201 (412)
T ss_pred -------------------ccCCcccc---hHHHHHHHHHHhccccH-HHcCCcEEEEechhhhccccCCCCcCCCcccH
Confidence 00000001 12222222211111100 123457999999999965
Q ss_pred HHHHHHHHHHhhhc---------------------CceeEEEEecCC------------------------------C--
Q 017844 145 EAQHSLRRTMEKYS---------------------ASCRLILCCNSS------------------------------S-- 171 (365)
Q Consensus 145 ~~~~~Ll~~le~~~---------------------~~~~~Il~t~~~------------------------------~-- 171 (365)
..|++|++.|+... .++.||+..+-. .
T Consensus 202 ~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~ 281 (412)
T PRK05342 202 GVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGEL 281 (412)
T ss_pred HHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHH
Confidence 37899999998421 111222211100 0
Q ss_pred ------------cccHHHhccce-eEEecCCCHHHHHHHHHH----HH-------HHcCC--CCCHHHHHHHHHHc
Q 017844 172 ------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEF----IA-------KKEGL--QLPSGFATRLAEKS 221 (365)
Q Consensus 172 ------------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~----~~-------~~~~~--~i~~~~~~~i~~~~ 221 (365)
.+.|.+..|+. ++.|.+++.+++.+++.. .. ...|+ .++++++++|++.+
T Consensus 282 ~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 282 LKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred HHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 03566677774 789999999999999872 22 23454 58899999999964
No 172
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.9e-12 Score=124.07 Aligned_cols=177 Identities=21% Similarity=0.301 Sum_probs=120.5
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
.+|+++.|.+.++..++..+.. + +.+ .+||+||||||||.+|+++|.+...+ .+.+.+.
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~---fi~v~~~----- 310 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSR---FISVKGS----- 310 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCe---EEEeeCH-----
Confidence 4788888888888777776631 1 223 39999999999999999999854211 1111110
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HH
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE 145 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~ 145 (365)
++...-.+ .....+++.+..... ..+.|+++||+|.+. ..
T Consensus 311 -------------------~l~sk~vG-esek~ir~~F~~A~~---------~~p~iiFiDEiDs~~~~r~~~~~~~~~r 361 (494)
T COG0464 311 -------------------ELLSKWVG-ESEKNIRELFEKARK---------LAPSIIFIDEIDSLASGRGPSEDGSGRR 361 (494)
T ss_pred -------------------HHhccccc-hHHHHHHHHHHHHHc---------CCCcEEEEEchhhhhccCCCCCchHHHH
Confidence 11111111 122245555555442 244799999999872 14
Q ss_pred HHHHHHHHHh--hhcCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 017844 146 AQHSLRRTME--KYSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRLAE 219 (365)
Q Consensus 146 ~~~~Ll~~le--~~~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~-i~~~~~~~i~~ 219 (365)
..+.|+..++ +...++.+|.+||.++.+++++.+ |+. .+.|++|+.++..++++..+...+.. ..+-.++.+++
T Consensus 362 ~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~ 441 (494)
T COG0464 362 VVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAE 441 (494)
T ss_pred HHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHH
Confidence 5667777775 334567788889999999999999 885 89999999999999999988765553 34566777777
Q ss_pred HcCC
Q 017844 220 KSNR 223 (365)
Q Consensus 220 ~~~g 223 (365)
.+.|
T Consensus 442 ~t~~ 445 (494)
T COG0464 442 ITEG 445 (494)
T ss_pred HhcC
Confidence 6665
No 173
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-12 Score=117.88 Aligned_cols=157 Identities=24% Similarity=0.390 Sum_probs=106.0
Q ss_pred CCccccCHHHHHHHHHHHH--------cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 12 LDQVIVHQDIAQNLKKLVT--------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 12 ~~~iig~~~~~~~l~~~l~--------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
|+++|-++...+.+..... +..+.+++||||||+|||.+|+-||+.- |.+|
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-----------GlDY---------- 412 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-----------GLDY---------- 412 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-----------CCce----------
Confidence 8999999988888877653 2334569999999999999999999842 2111
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC---------CHH---HHHHHH
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SRE---AQHSLR 151 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L---------~~~---~~~~Ll 151 (365)
..++.++..-+.. ..-..+.++++.... ..+.-+++|||+|.+ +.. +.|+||
T Consensus 413 ---A~mTGGDVAPlG~-----qaVTkiH~lFDWakk--------S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlL 476 (630)
T KOG0742|consen 413 ---AIMTGGDVAPLGA-----QAVTKIHKLFDWAKK--------SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL 476 (630)
T ss_pred ---ehhcCCCccccch-----HHHHHHHHHHHHHhh--------cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHH
Confidence 2222222111111 111123334433322 233468999999854 332 334444
Q ss_pred HHHhhhcCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHc
Q 017844 152 RTMEKYSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKE 205 (365)
Q Consensus 152 ~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~ 205 (365)
----+.+..+.++++||.+..++.++-+|+. +++|+-|..++..++|..++.+.
T Consensus 477 fRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 477 FRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred HHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 4444566788899999999999999999995 99999999999999998887653
No 174
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.43 E-value=1.1e-11 Score=113.77 Aligned_cols=200 Identities=18% Similarity=0.137 Sum_probs=121.3
Q ss_pred cccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc
Q 017844 15 VIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92 (365)
Q Consensus 15 iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (365)
++|+....+.+...+.. ....+++|+|++||||+++|++|...-.......+.++|..+ . + ...+ .
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~-~-~--~~l~--------~ 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAAL-S-E--NLLD--------S 68 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCC-C-h--HHHH--------H
Confidence 46766666655555543 222339999999999999999997643222223333444221 0 0 0000 0
Q ss_pred cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------Cce
Q 017844 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASC 161 (365)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------~~~ 161 (365)
..+.... +.+... .....+........+++|||++.|+...|..|++.|++.. .++
T Consensus 69 ~lfG~~~---g~~~ga----------~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 69 ELFGHEA---GAFTGA----------QKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred HHhcccc---ccccCc----------ccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 0000000 000000 0000000012234689999999999999999999997632 356
Q ss_pred eEEEEecCCC-------cccHHHhccce--eEEecCCC--HHHHHHHHHHHH----HHcC----CCCCHHHHHHHHHH-c
Q 017844 162 RLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIA----KKEG----LQLPSGFATRLAEK-S 221 (365)
Q Consensus 162 ~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~iL~~~~----~~~~----~~i~~~~~~~i~~~-~ 221 (365)
++|++|+... .+.+.+..|+. .|.++|+. .+++..++...+ .+.| ..+++++++.+.+. +
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~W 215 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHW 215 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCC
Confidence 7888887542 35577888874 67777776 456655555443 3333 36899999999995 5
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 017844 222 NRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 222 ~g~lr~ai~~l~~~~~~~ 239 (365)
.||+|++.+.++.++...
T Consensus 216 PGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 216 PGNVRELKNVVERSVYRH 233 (329)
T ss_pred CchHHHHHHHHHHHHHhC
Confidence 999999999999887754
No 175
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.42 E-value=2.8e-12 Score=112.43 Aligned_cols=199 Identities=19% Similarity=0.290 Sum_probs=111.1
Q ss_pred cccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc----c
Q 017844 15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL----S 90 (365)
Q Consensus 15 iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~ 90 (365)
++|.+..++.|..++.++...+++++||+|+|||++++.+...+.......+++..... ...... ... .
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~--~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEE-----SNESSL--RSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTB-----SHHHHH--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccc-----hhhhHH--HHHHHHHH
Confidence 57889999999999988877779999999999999999999876333222222222110 000000 000 0
Q ss_pred cccc----ee-cCCC--------CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC------HHHHHHHH
Q 017844 91 SANH----VE-LSPS--------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------REAQHSLR 151 (365)
Q Consensus 91 ~~~~----~~-~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------~~~~~~Ll 151 (365)
.... +. ..+. ............+++.+... +..-|++|||++.+. ......|.
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--------~~~~iiviDe~~~~~~~~~~~~~~~~~l~ 145 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK--------GKKVIIVIDEFQYLAIASEEDKDFLKSLR 145 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC--------HCCEEEEEETGGGGGBCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc--------CCcEEEEEecHHHHhhcccchHHHHHHHH
Confidence 0000 00 0000 00011112344555554432 223799999998877 45556677
Q ss_pred HHHhh--hcCceeEEEEecCCCc------ccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHc
Q 017844 152 RTMEK--YSASCRLILCCNSSSK------VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL--PSGFATRLAEKS 221 (365)
Q Consensus 152 ~~le~--~~~~~~~Il~t~~~~~------l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i--~~~~~~~i~~~~ 221 (365)
+.++. ...+..+|++++...- -..++..|+..+.+++++.++..+++...+... ..+ +++.++.+...+
T Consensus 146 ~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 146 SLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLT 224 (234)
T ss_dssp HHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHH
T ss_pred HHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHh
Confidence 77766 2345667777665321 123466777789999999999999999987665 544 999999999999
Q ss_pred CCCHHHHH
Q 017844 222 NRSLRRAI 229 (365)
Q Consensus 222 ~g~lr~ai 229 (365)
+|.++...
T Consensus 225 gG~P~~l~ 232 (234)
T PF01637_consen 225 GGNPRYLQ 232 (234)
T ss_dssp TT-HHHHH
T ss_pred CCCHHHHh
Confidence 99998764
No 176
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=9.5e-12 Score=114.22 Aligned_cols=151 Identities=15% Similarity=0.283 Sum_probs=100.0
Q ss_pred CCCCCCccccCHHHHHHHHHHH----Hc-------CCC--CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLV----TE-------QDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l----~~-------~~~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~ 74 (365)
+|.+|+.++-.++.++.+..-+ ++ |+. ..+||||||||||||++-++|+.|.- +
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-d------------ 262 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-D------------ 262 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC-c------------
Confidence 4678899988776666555444 32 222 12999999999999999999997621 1
Q ss_pred ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-C--H-------
Q 017844 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-S--R------- 144 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L-~--~------- 144 (365)
+ ..+.-.+..... + ++.+.... .+..||+|+++|.- + .
T Consensus 263 ---------I----------ydLeLt~v~~n~-----d-Lr~LL~~t-------~~kSIivIEDIDcs~~l~~~~~~~~~ 310 (457)
T KOG0743|consen 263 ---------I----------YDLELTEVKLDS-----D-LRHLLLAT-------PNKSILLIEDIDCSFDLRERRKKKKE 310 (457)
T ss_pred ---------e----------EEeeeccccCcH-----H-HHHHHHhC-------CCCcEEEEeecccccccccccccccc
Confidence 0 111111111111 2 33333222 24479999999853 1 0
Q ss_pred --------HHHHHHHHHHhhhcC----ceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHH
Q 017844 145 --------EAQHSLRRTMEKYSA----SCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAK 203 (365)
Q Consensus 145 --------~~~~~Ll~~le~~~~----~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~ 203 (365)
-....||+.++..-. .-.+|||||+.++++|++.++. ..|++..-+.+.......+.+.
T Consensus 311 ~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 311 NFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred cccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 123468888886533 3478999999999999999955 3799999999998888887764
No 177
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.3e-12 Score=117.96 Aligned_cols=178 Identities=23% Similarity=0.255 Sum_probs=122.7
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHH----------cCCCC--eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVT----------EQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~----------~~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~ 72 (365)
+.-++-.|+++.|.+.+++.+..++- .-+.+ .+|+.||||+|||.+++++|.+....
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at----------- 213 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT----------- 213 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcce-----------
Confidence 34466789999999999888887653 11222 38999999999999999999875221
Q ss_pred ceecCCCcceeccccccccccceecCCCCcC----ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----
Q 017844 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAG----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---- 144 (365)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~---- 144 (365)
| +.+.++... ......++.++.-.. ...+.|++|||+|.+-.
T Consensus 214 f---------------------f~iSassLtsK~~Ge~eK~vralf~vAr---------~~qPsvifidEidslls~Rs~ 263 (428)
T KOG0740|consen 214 F---------------------FNISASSLTSKYVGESEKLVRALFKVAR---------SLQPSVIFIDEIDSLLSKRSD 263 (428)
T ss_pred E---------------------eeccHHHhhhhccChHHHHHHHHHHHHH---------hcCCeEEEechhHHHHhhcCC
Confidence 1 222222211 111223444433322 23568999999997621
Q ss_pred -------HHH-HHHHHHHh---hhcCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844 145 -------EAQ-HSLRRTME---KYSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (365)
Q Consensus 145 -------~~~-~~Ll~~le---~~~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~ 212 (365)
... +.|+...- ....++.+|.+||.+..++++++.|++ ++.++.|+.+....+++..+.+.+..+.+.
T Consensus 264 ~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~ 343 (428)
T KOG0740|consen 264 NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDL 343 (428)
T ss_pred cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHH
Confidence 111 22333221 123467788889999999999999996 788999999999999999998887888899
Q ss_pred HHHHHHHHcCC
Q 017844 213 FATRLAEKSNR 223 (365)
Q Consensus 213 ~~~~i~~~~~g 223 (365)
.+..|++.++|
T Consensus 344 d~~~l~~~Teg 354 (428)
T KOG0740|consen 344 DISLLAKVTEG 354 (428)
T ss_pred HHHHHHHHhcC
Confidence 99999997765
No 178
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.40 E-value=1.9e-11 Score=106.12 Aligned_cols=108 Identities=26% Similarity=0.269 Sum_probs=90.6
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC------------CCcccHHHhccceeEEecCCCHHHHHHH
Q 017844 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS------------SSKVTEAIRSRCLNIRINSPTEEQIVKV 197 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~i 197 (365)
-+.|+||||+|+|+-+.+..|.+.+|+--. ..+|++||. +..++-.+.+|..+|.-.|++.+++.++
T Consensus 288 vpGVLFIDEvHMLDIEcFsFlNrAlE~d~~-PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~I 366 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIECFSFLNRALENDMA-PIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKI 366 (454)
T ss_pred ccceEEEeeehhhhhHHHHHHHHHhhhccC-cEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHH
Confidence 357999999999999999999999986422 234555553 2248889999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 017844 198 LEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ 238 (365)
Q Consensus 198 L~~~~~~~~~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~ 238 (365)
|+-+|+++++.+++++++.+.... ..++|.+++++......
T Consensus 367 L~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~ 408 (454)
T KOG2680|consen 367 LRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLV 408 (454)
T ss_pred HHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999854 57999999998765443
No 179
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.40 E-value=8.7e-12 Score=124.24 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=123.3
Q ss_pred CCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC-ccceeccccceecCCCcceeccccccc
Q 017844 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA-EKVKVENKTWKIDAGSRNIDLELTTLS 90 (365)
Q Consensus 12 ~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (365)
|..|+||+.++..+...+-.+...+++|.|++|+|||+++++++..+-.-.. ....+.|.. ..||..|.+| ..+.
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p--~~~~~~~~~~--~~~~ 78 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDP--DDPEEWCEEC--RRKY 78 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCC--CCccccChhh--hhcc
Confidence 7899999999998888777777777999999999999999999985511000 000111111 2344444444 2211
Q ss_pred cc------cceecCCC--CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----
Q 017844 91 SA------NHVELSPS--DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---- 158 (365)
Q Consensus 91 ~~------~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---- 158 (365)
.. .++.+... +........+...+..-......+.-......+++|||++.+++..++.|++.|++..
T Consensus 79 ~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~ 158 (633)
T TIGR02442 79 RPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE 158 (633)
T ss_pred cccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence 11 11111111 0000000011111110000000000012344699999999999999999999998631
Q ss_pred ---------CceeEEEEecCCC-cccHHHhccce-eEEecCCC-HHHHHHHHHHHHH-----------------------
Q 017844 159 ---------ASCRLILCCNSSS-KVTEAIRSRCL-NIRINSPT-EEQIVKVLEFIAK----------------------- 203 (365)
Q Consensus 159 ---------~~~~~Il~t~~~~-~l~~~l~sR~~-~i~~~~~~-~~~~~~iL~~~~~----------------------- 203 (365)
.++.+|.++|..+ .+.+++.+|+. .+.+..+. .++..+++.+...
T Consensus 159 r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i 238 (633)
T TIGR02442 159 REGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRI 238 (633)
T ss_pred ECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHH
Confidence 2344555444322 47789999994 56666554 3444444433111
Q ss_pred ------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHH
Q 017844 204 ------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETCR 236 (365)
Q Consensus 204 ------~~~~~i~~~~~~~i~~~~---~-g~lr~ai~~l~~~~ 236 (365)
...+.++++++++++..+ + .++|..+.++..+.
T Consensus 239 ~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ar 281 (633)
T TIGR02442 239 ARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAAR 281 (633)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 124678888888888754 2 24777777766543
No 180
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.39 E-value=3.2e-11 Score=110.88 Aligned_cols=204 Identities=14% Similarity=0.103 Sum_probs=124.1
Q ss_pred CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
.+++++|.....+.+.+.+.. ....+++|+|++||||+++|++|...-.......+.++|..+ . . . .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~-~--~-~-------~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL-N--E-N-------L 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCC-C--H-H-------H
Confidence 477899988777777666653 222349999999999999999997632222223344444322 0 0 0 0
Q ss_pred cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----------
Q 017844 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------- 158 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---------- 158 (365)
+ ....+........... ....+.-.......++|||++.|+...|..|++.+++..
T Consensus 73 ~-~~~lfg~~~~~~~g~~-------------~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 73 L-DSELFGHEAGAFTGAQ-------------KRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred H-HHHHccccccccCCcc-------------cccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 0 0000000000000000 000000012233689999999999999999999997632
Q ss_pred -CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHH----HHHcC----CCCCHHHHHHHH
Q 017844 159 -ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFI----AKKEG----LQLPSGFATRLA 218 (365)
Q Consensus 159 -~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~----~~~~~----~~i~~~~~~~i~ 218 (365)
.++++|++++... .+.+.+..|+. .|.++|+.. +++..++..+ +.+.+ ..++++++..+.
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~ 218 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL 218 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 2467888776542 35577888874 677777753 3455444443 33333 258999999998
Q ss_pred H-HcCCCHHHHHHHHHHHHhcC
Q 017844 219 E-KSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 219 ~-~~~g~lr~ai~~l~~~~~~~ 239 (365)
+ .+.||+|+..+.++.++..+
T Consensus 219 ~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 219 NYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred hCCCCcHHHHHHHHHHHHHHhc
Confidence 8 57999999999999887653
No 181
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.7e-12 Score=110.87 Aligned_cols=159 Identities=19% Similarity=0.313 Sum_probs=110.2
Q ss_pred ccccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
++|-.-.++.++-|-+...+.+++.+.- | +.|. +++||+||+|||.+|+++|+.-.. ..+.+-+
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA---TFlRvvG 252 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA---TFLRVVG 252 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch---hhhhhhh
Confidence 5666667999999999999999998741 2 2333 999999999999999999884211 1111111
Q ss_pred ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-------
Q 017844 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------- 143 (365)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------- 143 (365)
.+. +. .+-......++++++...... +.|+||||+|.+.
T Consensus 253 seL---------------------iQ----kylGdGpklvRqlF~vA~e~a---------pSIvFiDEIdAiGtKRyds~ 298 (440)
T KOG0726|consen 253 SEL---------------------IQ----KYLGDGPKLVRELFRVAEEHA---------PSIVFIDEIDAIGTKRYDSN 298 (440)
T ss_pred HHH---------------------HH----HHhccchHHHHHHHHHHHhcC---------CceEEeehhhhhccccccCC
Confidence 100 00 001111224667776655433 4799999999873
Q ss_pred ----HHHHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHH
Q 017844 144 ----REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLE 199 (365)
Q Consensus 144 ----~~~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~ 199 (365)
.+.|..++.+|+.. ...+++|++||..+.++|++.+-. ..|.|+.|+.....+++.
T Consensus 299 SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 299 SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQ 366 (440)
T ss_pred CccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEE
Confidence 34667777777653 457899999999999999998754 379999999888777765
No 182
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.39 E-value=1.3e-10 Score=109.51 Aligned_cols=153 Identities=14% Similarity=0.196 Sum_probs=91.8
Q ss_pred ccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccc
Q 017844 14 QVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN 93 (365)
Q Consensus 14 ~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (365)
.++|++++++.+...+..+.. ++|.||||+|||++|++++....... ......+ .| .
T Consensus 21 ~i~gre~vI~lll~aalag~h--VLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~-~f-------------t------ 77 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGES--VFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMT-RF-------------S------ 77 (498)
T ss_pred hccCcHHHHHHHHHHHccCCC--EEEECCCChhHHHHHHHHHHHhcccC-cceeeee-ee-------------c------
Confidence 468999999988888766644 99999999999999999998653211 0000000 00 0
Q ss_pred ceecCCCC-cCccchhHHHHHH--HHHHhcCCCCCCC-CCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---------Cc
Q 017844 94 HVELSPSD-AGFQDRYVVQEVI--KEMAKNRPIDTKG-KRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------AS 160 (365)
Q Consensus 94 ~~~~~~~~-~~~~~~~~~~~~l--~~~~~~~~~~~~~-~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---------~~ 160 (365)
.+.+ .|.. .+.... ..+.... .+ -....++++||+..+++..++.|+..|++.. -.
T Consensus 78 ----tp~DLfG~l---~i~~~~~~g~f~r~~----~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp 146 (498)
T PRK13531 78 ----TPEEVFGPL---SIQALKDEGRYQRLT----SGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIP 146 (498)
T ss_pred ----CcHHhcCcH---HHhhhhhcCchhhhc----CCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCC
Confidence 0000 0000 001100 0000000 00 1123599999999999999999999997632 22
Q ss_pred eeEEEEecCC-C---cccHHHhccce-eEEecCCC-HHHHHHHHHH
Q 017844 161 CRLILCCNSS-S---KVTEAIRSRCL-NIRINSPT-EEQIVKVLEF 200 (365)
Q Consensus 161 ~~~Il~t~~~-~---~l~~~l~sR~~-~i~~~~~~-~~~~~~iL~~ 200 (365)
.+||++++++ + ...+++.+|+. .+.+++++ .++..++|..
T Consensus 147 ~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 147 MRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred CcEEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 3566655542 2 13458999995 68888886 4555777754
No 183
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.38 E-value=8.2e-12 Score=131.28 Aligned_cols=108 Identities=12% Similarity=0.105 Sum_probs=76.1
Q ss_pred CceEEEEeCCCCCCHH-----HHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHH
Q 017844 130 GFKVLVLNEVDKLSRE-----AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVK 196 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~-----~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~ 196 (365)
.|.||+|||+|.+... ..+.|+..|... ..++.+|.+||.++.++|++++ |+ ..|.++.|+..+..+
T Consensus 1732 SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHH
Confidence 3589999999998743 245666666532 3456788888899999999998 77 478999998888888
Q ss_pred HHHHHHHHcCCCCCHH--HHHHHHHHcCC-CHHHHHHHHHHHHh
Q 017844 197 VLEFIAKKEGLQLPSG--FATRLAEKSNR-SLRRAILSFETCRV 237 (365)
Q Consensus 197 iL~~~~~~~~~~i~~~--~~~~i~~~~~g-~lr~ai~~l~~~~~ 237 (365)
++.......|+.+.++ .++.+|+.+.| +.++..++++.++.
T Consensus 1812 iL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred HHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 7765444556655543 37888888876 44555555554443
No 184
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4e-12 Score=108.54 Aligned_cols=184 Identities=18% Similarity=0.283 Sum_probs=119.6
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccce
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVK 67 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~ 67 (365)
|+-++.-.-.++.++-|-++.+..+++.++- | ..|. +++|||||+|||.+|+++|+.- +...+.
T Consensus 165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dacfir 241 (435)
T KOG0729|consen 165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DACFIR 241 (435)
T ss_pred EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---CceEEe
Confidence 3445554456899999999999998887752 2 2233 9999999999999999998742 111111
Q ss_pred eccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-----
Q 017844 68 VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL----- 142 (365)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L----- 142 (365)
+-+.+. .-.++ ......+++++... . ..+.-++++||+|.+
T Consensus 242 vigsel--------------------vqkyv-----gegarmvrelf~ma-r--------tkkaciiffdeidaiggarf 287 (435)
T KOG0729|consen 242 VIGSEL--------------------VQKYV-----GEGARMVRELFEMA-R--------TKKACIIFFDEIDAIGGARF 287 (435)
T ss_pred ehhHHH--------------------HHHHh-----hhhHHHHHHHHHHh-c--------ccceEEEEeeccccccCccc
Confidence 111100 00011 11112355555432 2 223479999999977
Q ss_pred ------CHHHHHHHHHHHhh-----hcCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCC
Q 017844 143 ------SREAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQ 208 (365)
Q Consensus 143 ------~~~~~~~Ll~~le~-----~~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~ 208 (365)
+.+.|..++.++.+ +..++++.++||.++.++|++.+-. ..++|.-|+.+-...+++-+++.-.
T Consensus 288 ddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms-- 365 (435)
T KOG0729|consen 288 DDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS-- 365 (435)
T ss_pred cCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc--
Confidence 34567777887764 4678999999999999999998754 3799999999988888875554332
Q ss_pred CCHHH-HHHHHHHcCC
Q 017844 209 LPSGF-ATRLAEKSNR 223 (365)
Q Consensus 209 i~~~~-~~~i~~~~~g 223 (365)
++.+. .+.|++.+..
T Consensus 366 verdir~ellarlcpn 381 (435)
T KOG0729|consen 366 VERDIRFELLARLCPN 381 (435)
T ss_pred cccchhHHHHHhhCCC
Confidence 22332 5566666544
No 185
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.37 E-value=3e-11 Score=117.90 Aligned_cols=205 Identities=14% Similarity=0.145 Sum_probs=124.3
Q ss_pred CCCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844 9 PKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (365)
Q Consensus 9 P~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (365)
..+|++++|.....+.+...++. ....+++|+|++||||+++|+++...-.......+.++|..+ |. ...+
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~---~~-~~~e--- 272 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI---PD-DVVE--- 272 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC---CH-HHHH---
Confidence 45899999987766666655542 222339999999999999999986533222222344444322 00 0000
Q ss_pred cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------
Q 017844 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY--------- 157 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~--------- 157 (365)
...+...+....... ..... .-.......++|||++.|+...|..|++.+++.
T Consensus 273 -----~elFG~~~~~~~~~~-----------~~~~g--~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 273 -----SELFGHAPGAYPNAL-----------EGKKG--FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred -----HHhcCCCCCCcCCcc-----------cCCCC--hhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCc
Confidence 000000000000000 00000 000123368999999999999999999999763
Q ss_pred --cCceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHH----HHHHHHHcCC---CCCHHHHHHH
Q 017844 158 --SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKV----LEFIAKKEGL---QLPSGFATRL 217 (365)
Q Consensus 158 --~~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~i----L~~~~~~~~~---~i~~~~~~~i 217 (365)
+.++++|++|+... .+.+.+..|+. .+.++|+.. +++..+ +.+.+.+.|. .+++++++.+
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L 414 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 414 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 12457887776543 25566888864 566666654 244433 3444444443 6899999999
Q ss_pred HHH-cCCCHHHHHHHHHHHHhc
Q 017844 218 AEK-SNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 218 ~~~-~~g~lr~ai~~l~~~~~~ 238 (365)
... +.||+|++.+.++.++..
T Consensus 415 ~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 415 TRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred hcCCCCCHHHHHHHHHHHHHHh
Confidence 996 999999999999988764
No 186
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.37 E-value=3.2e-11 Score=116.83 Aligned_cols=205 Identities=15% Similarity=0.116 Sum_probs=125.0
Q ss_pred CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (365)
.+|++++|+....+.+...++. ....+++|+|++||||+++|+.|...-.......+.++|..+ |. .
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l---~e-~------- 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAI---AE-S------- 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccC---Ch-h-------
Confidence 4689999998888877777753 223349999999999999999997643223333344444322 00 0
Q ss_pred ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---------
Q 017844 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--------- 158 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~--------- 158 (365)
.+ ....+.+......... .....+.-.......++|||++.|+...|..|++.|++..
T Consensus 278 ll-eseLFG~~~gaftga~------------~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 278 LL-EAELFGYEEGAFTGAR------------RGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HH-HHHhcCCccccccccc------------ccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCce
Confidence 00 0000000000000000 0000000001234689999999999999999999998632
Q ss_pred --CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHH----HHcCCCCCHHHHHH-----
Q 017844 159 --ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIA----KKEGLQLPSGFATR----- 216 (365)
Q Consensus 159 --~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~----~~~~~~i~~~~~~~----- 216 (365)
.++++|++|+... .+.+.+..|+. .+.++|+.. +++..+....+ ...++.++++++..
T Consensus 345 ~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~ 424 (526)
T TIGR02329 345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVA 424 (526)
T ss_pred eeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHH
Confidence 2457888887653 24445666653 677777654 35554444443 34466789999886
Q ss_pred --HHH-HcCCCHHHHHHHHHHHHhc
Q 017844 217 --LAE-KSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 217 --i~~-~~~g~lr~ai~~l~~~~~~ 238 (365)
+.+ .+.||+|++.+.++.++..
T Consensus 425 ~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 425 DPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHh
Confidence 555 6799999999999998764
No 187
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.36 E-value=4.6e-11 Score=116.52 Aligned_cols=205 Identities=14% Similarity=0.118 Sum_probs=127.2
Q ss_pred CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
++.+++|+....+.+...++. ....+++|+|++||||+++|++|...-.......+.++|..+ |. ...+
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~---~~-~~~e----- 255 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAAL---PE-SLAE----- 255 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccC---Ch-HHHH-----
Confidence 678899998888777777654 222349999999999999999998753323333344444322 00 0000
Q ss_pred cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----------
Q 017844 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------- 158 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---------- 158 (365)
...+........... ....+.........++|||++.|+...|..|++.+++..
T Consensus 256 ---~~lfG~~~g~~~ga~-------------~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 256 ---SELFGHVKGAFTGAI-------------SNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred ---HHhcCccccccCCCc-------------ccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 000000000000000 000000011233679999999999999999999997632
Q ss_pred -CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHH----HHcC---CCCCHHHHHHHHH
Q 017844 159 -ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIA----KKEG---LQLPSGFATRLAE 219 (365)
Q Consensus 159 -~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~----~~~~---~~i~~~~~~~i~~ 219 (365)
.++++|++|+... .+.+.+..|+. .|.++|+.. +++..+....+ .+.| ..++++++..+..
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~ 399 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA 399 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 2568888887653 35667777764 466666643 34544444333 3333 5789999999998
Q ss_pred -HcCCCHHHHHHHHHHHHhcCC
Q 017844 220 -KSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 220 -~~~g~lr~ai~~l~~~~~~~~ 240 (365)
.+.||+|+..+.++.++..+.
T Consensus 400 y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 400 YDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CCCCCcHHHHHHHHHHHHHhcC
Confidence 579999999999999877543
No 188
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.35 E-value=4.2e-11 Score=112.38 Aligned_cols=206 Identities=16% Similarity=0.153 Sum_probs=131.0
Q ss_pred CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (365)
..+.+++|+..+.+.+...+.+ ..-.+++|+|++||||..+|++|.+.-.......+.++|..+ |.+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAi---p~~-------- 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAI---PEN-------- 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccC---CHH--------
Confidence 3678899999999888888865 222339999999999999999998743222333344444222 000
Q ss_pred ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh----------
Q 017844 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------- 157 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---------- 157 (365)
. -....+......+.. +.....+.--..+...+++||+..|+.+.|..|++.|++.
T Consensus 207 l-~ESELFGhekGAFTG-------------A~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 L-LESELFGHEKGAFTG-------------AITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred H-HHHHhhcccccCcCC-------------cccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcc
Confidence 0 000001110000000 0000000001223468999999999999999999999863
Q ss_pred -cCceeEEEEecCCC-------cccHHHhccceeEEecCCCHHH----H----HHHHHHHHHHcCC---CCCHHHHHHHH
Q 017844 158 -SASCRLILCCNSSS-------KVTEAIRSRCLNIRINSPTEEQ----I----VKVLEFIAKKEGL---QLPSGFATRLA 218 (365)
Q Consensus 158 -~~~~~~Il~t~~~~-------~l~~~l~sR~~~i~~~~~~~~~----~----~~iL~~~~~~~~~---~i~~~~~~~i~ 218 (365)
+-++++|.+|+..- ++-+.+..|..++.+.-|+..+ + ..++++.+.+.|. .+++++++.+.
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~ 352 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALL 352 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 23567888888653 4677888888776666565443 2 3334445554443 68899999998
Q ss_pred H-HcCCCHHHHHHHHHHHHhcCC
Q 017844 219 E-KSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 219 ~-~~~g~lr~ai~~l~~~~~~~~ 240 (365)
. .+.||+|++.|.++.++....
T Consensus 353 ~y~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 353 AYDWPGNVRELENVVERAVILSE 375 (464)
T ss_pred hCCCChHHHHHHHHHHHHHhcCC
Confidence 8 589999999999999877654
No 189
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.35 E-value=6.3e-11 Score=113.71 Aligned_cols=187 Identities=17% Similarity=0.196 Sum_probs=118.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc-------CCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVF-------GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY 108 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (365)
-++++|-||+|||.+++.+.++|. .+....+.+++..+ ..|..- ++. . ...+..... ....
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l-~~~~~~-Y~~---I-----~~~lsg~~~--~~~~ 491 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL-ASPREI-YEK---I-----WEALSGERV--TWDA 491 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee-cCHHHH-HHH---H-----HHhcccCcc--cHHH
Confidence 399999999999999999999876 34444444555433 111000 000 0 000111100 0000
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---CceeEEEEecCCC---c-ccHHHhccc
Q 017844 109 VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---ASCRLILCCNSSS---K-VTEAIRSRC 181 (365)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---~~~~~Il~t~~~~---~-l~~~l~sR~ 181 (365)
.+..+-..+. .+ .......||+|||+|.|-...|..|.++++++. ....+|.++|+.+ + +...+.||.
T Consensus 492 al~~L~~~f~--~~---k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRl 566 (767)
T KOG1514|consen 492 ALEALNFRFT--VP---KPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRL 566 (767)
T ss_pred HHHHHHHhhc--cC---CCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhc
Confidence 1111111111 11 124456899999999999888999999999863 3355666666654 2 333556675
Q ss_pred --eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHhcCC
Q 017844 182 --LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE---KSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 182 --~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~---~~~g~lr~ai~~l~~~~~~~~ 240 (365)
..+.|.|++.+++.+++..++... ..++.++++.+++ ...||.|+|+..+++++--+.
T Consensus 567 g~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~ 629 (767)
T KOG1514|consen 567 GLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAE 629 (767)
T ss_pred cceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 589999999999999999877543 3567888888877 457999999999998766544
No 190
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.6e-11 Score=106.31 Aligned_cols=141 Identities=18% Similarity=0.309 Sum_probs=88.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC----cCccchhHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD----AGFQDRYVVQE 112 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 112 (365)
++++||||||||++++++|+.+--.. +++ . ..+..++++.-. .-...+..+..
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~------~~~----y-------------~~~~liEinshsLFSKWFsESgKlV~k 236 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRT------NDR----Y-------------YKGQLIEINSHSLFSKWFSESGKLVAK 236 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeee------cCc----c-------------ccceEEEEehhHHHHHHHhhhhhHHHH
Confidence 89999999999999999999873211 110 0 111122222211 00111123444
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhhhcCc-eeEEEEecC-CCcccH
Q 017844 113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------------EAQHSLRRTMEKYSAS-CRLILCCNS-SSKVTE 175 (365)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~---------------~~~~~Ll~~le~~~~~-~~~Il~t~~-~~~l~~ 175 (365)
.++.+...... .+..-.++|||++.|.. .+.|+++.-|+..... ..+|++|++ .+.++.
T Consensus 237 mF~kI~ELv~d----~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~ 312 (423)
T KOG0744|consen 237 MFQKIQELVED----RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDV 312 (423)
T ss_pred HHHHHHHHHhC----CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHH
Confidence 44444443332 34456889999997732 2568888888876432 334555444 457999
Q ss_pred HHhccce-eEEecCCCHHHHHHHHHHHHHH
Q 017844 176 AIRSRCL-NIRINSPTEEQIVKVLEFIAKK 204 (365)
Q Consensus 176 ~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~ 204 (365)
++.+|.. +..+.+|+.+.+.++++....+
T Consensus 313 AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 313 AFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 9999996 7888999999999999876653
No 191
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.34 E-value=6e-11 Score=114.89 Aligned_cols=204 Identities=15% Similarity=0.150 Sum_probs=120.7
Q ss_pred CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhc--------CCCCccceeccccceecCCCc
Q 017844 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVF--------GPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~--------~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+|++++|+....+.++..+.. ....+++|+|++||||+++|++|...+. ......+.++|..+ |. .
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal---~e-~ 292 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAI---AE-S 292 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccC---Ch-h
Confidence 688999998888888777653 2233499999999999999999987521 11112222333211 00 0
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY--- 157 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~--- 157 (365)
..+ ...+.+........ ......+.-.......++|||++.|+...|..|++.|++.
T Consensus 293 lle--------seLFG~~~gaftga------------~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~ 352 (538)
T PRK15424 293 LLE--------AELFGYEEGAFTGS------------RRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT 352 (538)
T ss_pred hHH--------HHhcCCccccccCc------------cccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEE
Confidence 000 00000000000000 0000000001123468999999999999999999999863
Q ss_pred --------cCceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHHH----HcCCCCCHHHH
Q 017844 158 --------SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAK----KEGLQLPSGFA 214 (365)
Q Consensus 158 --------~~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~~----~~~~~i~~~~~ 214 (365)
+.++++|++|+... .+.+.+..|+. .++++|+.. +++..+....+. ..+..++++++
T Consensus 353 r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~ 432 (538)
T PRK15424 353 RVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALR 432 (538)
T ss_pred ecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 12457888887553 24445666664 566666643 455555555444 35667888776
Q ss_pred H-------HHHH-HcCCCHHHHHHHHHHHHhc
Q 017844 215 T-------RLAE-KSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 215 ~-------~i~~-~~~g~lr~ai~~l~~~~~~ 238 (365)
. .+.. .+.||+|++.|.++.++..
T Consensus 433 ~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 433 QGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 3 3333 4789999999999998775
No 192
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.34 E-value=4.1e-11 Score=112.02 Aligned_cols=190 Identities=21% Similarity=0.227 Sum_probs=111.9
Q ss_pred cccCHHHHHHHHHHHH-------c---CC--------CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 15 VIVHQDIAQNLKKLVT-------E---QD--------CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 15 iig~~~~~~~l~~~l~-------~---~~--------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
++||+++++.+..++. . .. ..+++|+||+|+|||++|+++|+.+..+. ..+++
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf---~~~da------ 149 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF---AIADA------ 149 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe---EEech------
Confidence 4899999998877662 0 11 23599999999999999999998663211 00111
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------------
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------ 144 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------------ 144 (365)
. .+.+..+... .....+.......+... ....+.|++|||+|.+.+
T Consensus 150 ----------~--------~L~~~gyvG~---d~e~~L~~~~~~~~~~l-~~a~~gIV~lDEIdkl~~~~~~~s~~~dvs 207 (413)
T TIGR00382 150 ----------T--------TLTEAGYVGE---DVENILLKLLQAADYDV-EKAQKGIIYIDEIDKISRKSENPSITRDVS 207 (413)
T ss_pred ----------h--------hccccccccc---cHHHHHHHHHHhCcccH-HhcccceEEecccchhchhhcccccccccc
Confidence 0 0111111111 12222322222121100 122346999999998876
Q ss_pred --HHHHHHHHHHhhhc-------------CceeEEEEecC----------------------------C----C------
Q 017844 145 --EAQHSLRRTMEKYS-------------ASCRLILCCNS----------------------------S----S------ 171 (365)
Q Consensus 145 --~~~~~Ll~~le~~~-------------~~~~~Il~t~~----------------------------~----~------ 171 (365)
..|+.|+++|+... .+..+|.|+|- . .
T Consensus 208 g~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~ 287 (413)
T TIGR00382 208 GEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADL 287 (413)
T ss_pred chhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHH
Confidence 58999999996321 12223333332 0 0
Q ss_pred ------------cccHHHhccce-eEEecCCCHHHHHHHHHHH----HH-------HcCC--CCCHHHHHHHHHHc---C
Q 017844 172 ------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFI----AK-------KEGL--QLPSGFATRLAEKS---N 222 (365)
Q Consensus 172 ------------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~----~~-------~~~~--~i~~~~~~~i~~~~---~ 222 (365)
.+.|.+..|+. ++.|.+++.+++.+++... .+ ..|+ .+++++++.|++.+ .
T Consensus 288 ~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~ 367 (413)
T TIGR00382 288 LRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERK 367 (413)
T ss_pred HHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCC
Confidence 03466777774 7889999999999998752 22 1244 57899999999964 2
Q ss_pred CCHHHHHHHHHHH
Q 017844 223 RSLRRAILSFETC 235 (365)
Q Consensus 223 g~lr~ai~~l~~~ 235 (365)
-..|.....++..
T Consensus 368 ~GAR~Lr~iie~~ 380 (413)
T TIGR00382 368 TGARGLRSIVEGL 380 (413)
T ss_pred CCchHHHHHHHHh
Confidence 2355555555544
No 193
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.1e-11 Score=117.79 Aligned_cols=180 Identities=19% Similarity=0.247 Sum_probs=113.5
Q ss_pred ccCCCCCCccccCHHHHHHHHHHHHc----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 6 KYRPKTLDQVIVHQDIAQNLKKLVTE----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 6 k~rP~~~~~iig~~~~~~~l~~~l~~----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
|-.--+|+|+-|-++++..+...++- | +... ++||||||||||-+|+++|.+.. -+|
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-----------L~F 733 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-----------LNF 733 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-----------eeE
Confidence 44445899999999999999988752 2 2122 99999999999999999998641 111
Q ss_pred eecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH--------
Q 017844 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-------- 145 (365)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-------- 145 (365)
-....++.+.+.. ......+|+.+..... ..+-||++||+|.+.+.
T Consensus 734 -------------lSVKGPELLNMYV----GqSE~NVR~VFerAR~---------A~PCVIFFDELDSlAP~RG~sGDSG 787 (953)
T KOG0736|consen 734 -------------LSVKGPELLNMYV----GQSEENVREVFERARS---------AAPCVIFFDELDSLAPNRGRSGDSG 787 (953)
T ss_pred -------------EeecCHHHHHHHh----cchHHHHHHHHHHhhc---------cCCeEEEeccccccCccCCCCCCcc
Confidence 2222222222211 1122346677666543 34589999999988542
Q ss_pred -----HHHHHHHHHhhhc----CceeEEEEecCCCcccHHHhc--cce-eEEecCCCHH-HHHHHHHHHHHHcCCCCCHH
Q 017844 146 -----AQHSLRRTMEKYS----ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEE-QIVKVLEFIAKKEGLQLPSG 212 (365)
Q Consensus 146 -----~~~~Ll~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~-~~~~iL~~~~~~~~~~i~~~ 212 (365)
....|+--|+..+ ..+-+|.+||.++-++|++.+ |+. .+++.+...+ ...++|+...++- .++++
T Consensus 788 GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF--kLded 865 (953)
T KOG0736|consen 788 GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF--KLDED 865 (953)
T ss_pred ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc--cCCCC
Confidence 3445666665443 345566678888889999987 453 5666666444 4556666555443 33333
Q ss_pred -HHHHHHHHcCCC
Q 017844 213 -FATRLAEKSNRS 224 (365)
Q Consensus 213 -~~~~i~~~~~g~ 224 (365)
.+..||+.+.-+
T Consensus 866 VdL~eiAk~cp~~ 878 (953)
T KOG0736|consen 866 VDLVEIAKKCPPN 878 (953)
T ss_pred cCHHHHHhhCCcC
Confidence 377777766543
No 194
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.33 E-value=3.5e-11 Score=110.96 Aligned_cols=206 Identities=18% Similarity=0.169 Sum_probs=126.6
Q ss_pred CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcC-CCCccceeccccceecCCCcceeccc
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKVENKTWKIDAGSRNIDLEL 86 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (365)
..+.+++|.....+.+++.++. ....+++++|++|+||+.+|+.|...-.. .....+.+||..+..++..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~------- 147 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE------- 147 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH-------
Confidence 3578899987777777766654 22234999999999999999999843222 2344466666544111100
Q ss_pred cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh----------
Q 017844 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK---------- 156 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~---------- 156 (365)
...+.+....... +.....+.-...+...+++||++.|.+..|..|+++|++
T Consensus 148 -----~eLFG~~kGaftG-------------a~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 148 -----AELFGHEKGAFTG-------------AQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred -----HHHhccccceeec-------------ccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCC
Confidence 0001111110000 000000000122346899999999999999999999997
Q ss_pred -hcCceeEEEEecCCC--cccH--HHhccce--eEEecCCCHH--HHHHHHH----HHHHHcCCC---CCHHHHHHHHH-
Q 017844 157 -YSASCRLILCCNSSS--KVTE--AIRSRCL--NIRINSPTEE--QIVKVLE----FIAKKEGLQ---LPSGFATRLAE- 219 (365)
Q Consensus 157 -~~~~~~~Il~t~~~~--~l~~--~l~sR~~--~i~~~~~~~~--~~~~iL~----~~~~~~~~~---i~~~~~~~i~~- 219 (365)
.+.++++|++|+... .+.. ++..|+. .|+++++... ++...++ ..+.+.+.. .+++++..+..
T Consensus 210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y 289 (403)
T COG1221 210 PRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAY 289 (403)
T ss_pred CcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 345678888887654 3555 7777664 5666666433 3333333 344455543 33566666665
Q ss_pred HcCCCHHHHHHHHHHHHhcCC
Q 017844 220 KSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 220 ~~~g~lr~ai~~l~~~~~~~~ 240 (365)
.+.||+|+..|.++.+++.+.
T Consensus 290 ~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 290 DWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred CCCCcHHHHHHHHHHHHHHhc
Confidence 579999999999999888764
No 195
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.33 E-value=8.8e-11 Score=118.80 Aligned_cols=205 Identities=18% Similarity=0.200 Sum_probs=124.5
Q ss_pred CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (365)
.+|++++|+....+.+...++. ....+++|+|++|||||++|++|...-.......+.++|... +.. ..+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~---~~~-~~~---- 444 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM---PAG-LLE---- 444 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccC---Chh-Hhh----
Confidence 4688999998887777665543 222349999999999999999998754333333444444322 000 000
Q ss_pred ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---------
Q 017844 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--------- 158 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~--------- 158 (365)
...+........... ......+. .....+++|||++.|+...|..|++.|++..
T Consensus 445 ----~~lfg~~~~~~~g~~----~~~~g~le---------~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 445 ----SDLFGHERGAFTGAS----AQRIGRFE---------LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred ----hhhcCcccccccccc----cchhhHHH---------hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 000000000000000 00111111 1123689999999999999999999997632
Q ss_pred --CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHH----HHHHcCC---CCCHHHHHHHH
Q 017844 159 --ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEF----IAKKEGL---QLPSGFATRLA 218 (365)
Q Consensus 159 --~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~----~~~~~~~---~i~~~~~~~i~ 218 (365)
.++++|++|+... .+...+..|+. .|.++|+.. +++..++.. .+.+.|. .+++++++.+.
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~ 587 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLS 587 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 3567888887643 24455666654 466666643 344444443 3333342 47899999998
Q ss_pred H-HcCCCHHHHHHHHHHHHhcC
Q 017844 219 E-KSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 219 ~-~~~g~lr~ai~~l~~~~~~~ 239 (365)
. .+.||+|+..+.++.++..+
T Consensus 588 ~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 588 NMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred hCCCCCcHHHHHHHHHHHHHhC
Confidence 8 58999999999999887653
No 196
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.33 E-value=5.9e-11 Score=119.29 Aligned_cols=199 Identities=16% Similarity=0.142 Sum_probs=123.5
Q ss_pred CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (365)
.+|++++|.....+.+...++. ....+++|+|++||||+++|++|...........+.++|..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~-------------- 387 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLY-------------- 387 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCC--------------
Confidence 3799999987777666655543 222339999999999999999998754333333344444322
Q ss_pred ccccccceecCCCCcCccchhHHHHHHHHH--Hh-cCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc------
Q 017844 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEM--AK-NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ 158 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~------ 158 (365)
. ......+++... .. ....+.-.......++|||++.|+...|..|++.+++..
T Consensus 388 ---------------~--~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~ 450 (638)
T PRK11388 388 ---------------P--DEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDS 450 (638)
T ss_pred ---------------C--hHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCC
Confidence 0 000000111000 00 000000001234689999999999999999999998632
Q ss_pred -----CceeEEEEecCCC-------cccHHHhccce--eEEecCCCHH--HHHHHHHHHHH----Hc--CCCCCHHHHHH
Q 017844 159 -----ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTEE--QIVKVLEFIAK----KE--GLQLPSGFATR 216 (365)
Q Consensus 159 -----~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~~--~~~~iL~~~~~----~~--~~~i~~~~~~~ 216 (365)
.++++|++|+... .+.+.+..|+. .|.++|+... ++..++..++. +. .+.+++++++.
T Consensus 451 ~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 451 RRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred CceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 1456777777542 34455666654 5666666543 45544444443 22 24689999999
Q ss_pred HHHH-cCCCHHHHHHHHHHHHhcC
Q 017844 217 LAEK-SNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 217 i~~~-~~g~lr~ai~~l~~~~~~~ 239 (365)
+.+. +.||+|++.+.++.++...
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHhC
Confidence 9996 4999999999999877643
No 197
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.31 E-value=9.7e-12 Score=104.41 Aligned_cols=132 Identities=20% Similarity=0.277 Sum_probs=67.7
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc
Q 017844 11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (365)
.|++++||+.+++.+.-+..++ +|++++||||+|||++|+.+.. ++.+-...-.++...+ .+.++..... ....
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~-lLP~l~~~e~le~~~i-~s~~~~~~~~--~~~~ 74 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPS-LLPPLTEEEALEVSKI-YSVAGLGPDE--GLIR 74 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHH-CS--CCEECCESS--S--TT---S-----EEEE
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHH-hCCCCchHHHhhhccc-cccccCCCCC--ceec
Confidence 4899999999999999888764 4699999999999999999997 4333221111111111 0000000000 0000
Q ss_pred cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844 91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~ 156 (365)
...+.. .....+...++.......+- .-......|+++||+..+++...+.|++.+++
T Consensus 75 ~~Pfr~-------phhs~s~~~liGgg~~~~PG-eislAh~GVLflDE~~ef~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 75 QRPFRA-------PHHSASEAALIGGGRPPRPG-EISLAHRGVLFLDELNEFDRSVLDALRQPLED 132 (206)
T ss_dssp ---EEE-------E-TT--HHHHHEEGGGEEE--CGGGGTTSEEEECETTTS-HHHHHHHHHHHHH
T ss_pred CCCccc-------CCCCcCHHHHhCCCcCCCcC-HHHHhcCCEEEechhhhcCHHHHHHHHHHHHC
Confidence 000000 00001111222111111111 11233557999999999999999999999986
No 198
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.7e-11 Score=116.87 Aligned_cols=199 Identities=16% Similarity=0.256 Sum_probs=137.7
Q ss_pred CCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844 9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (365)
Q Consensus 9 P~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
-..++-++|.++.++.+.+.+.+....|-++.|+||+|||.++..+|..+...+....
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~---------------------- 223 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPES---------------------- 223 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHH----------------------
Confidence 3457889999998888888887766666789999999999999999998754432211
Q ss_pred cccccceec-----CCC-CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHHHH
Q 017844 89 LSSANHVEL-----SPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRRT 153 (365)
Q Consensus 89 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------~~~~~~Ll~~ 153 (365)
+.....+.+ .+. .+.......++.+++++... +..|+||||+|.+- .++.|.|...
T Consensus 224 L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~---------~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPa 294 (786)
T COG0542 224 LKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKS---------KNVILFIDEIHTIVGAGATEGGAMDAANLLKPA 294 (786)
T ss_pred HcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcC---------CCeEEEEechhhhcCCCcccccccchhhhhHHH
Confidence 111111111 111 11111122344445554432 25799999999873 2245555555
Q ss_pred HhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Q 017844 154 MEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS 224 (365)
Q Consensus 154 le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~~~~g~ 224 (365)
|. ....++|.+|+..+ .-++++-+||+.|.+..|+.++...+|+-...+ +++.++++++...+..|..-
T Consensus 295 LA--RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 295 LA--RGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred Hh--cCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 55 24678888887554 357899999999999999999999999866553 57899999999999977543
Q ss_pred ------HHHHHHHHHHHHhcCC
Q 017844 225 ------LRRAILSFETCRVQQY 240 (365)
Q Consensus 225 ------lr~ai~~l~~~~~~~~ 240 (365)
+-.||.+++.+++...
T Consensus 373 I~dR~LPDKAIDLiDeA~a~~~ 394 (786)
T COG0542 373 IPDRFLPDKAIDLLDEAGARVR 394 (786)
T ss_pred cccCCCCchHHHHHHHHHHHHH
Confidence 3579999998876643
No 199
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1.6e-11 Score=112.76 Aligned_cols=206 Identities=17% Similarity=0.177 Sum_probs=130.8
Q ss_pred CccccCHHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCc--cceeccccceecCCCcceeccc
Q 017844 13 DQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNIDLEL 86 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~--~i~~~~~~~~~~~~~~~~~~~~ 86 (365)
..+.|.+.....++.++.. +....+++.|-||+|||.+...+...+.+.... .++++|... ..+. .+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl-~~~~----aiF- 223 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSL-TEAS----AIF- 223 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccc-cchH----HHH-
Confidence 4567777777777777653 344459999999999999998776655443332 355665443 1110 000
Q ss_pred cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---cCceeE
Q 017844 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---SASCRL 163 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---~~~~~~ 163 (365)
..+ +-.+.....+... ..+....+..... .....-|+++||.|.|....+..|..+++.+ ..+..+
T Consensus 224 ~kI----~~~~~q~~~s~~~---~~~~~~~~~~h~~----q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iL 292 (529)
T KOG2227|consen 224 KKI----FSSLLQDLVSPGT---GMQHLEKFEKHTK----QSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIIL 292 (529)
T ss_pred HHH----HHHHHHHhcCCch---hHHHHHHHHHHHh----cccceEEEEechhhHHhhcccceeeeehhcccCCcceeee
Confidence 000 0001000001011 1122222222111 1123468999999999888788888888764 345667
Q ss_pred EEEecCCC---cccHHHhccc----eeEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHH---cCCCHHHHHHHH
Q 017844 164 ILCCNSSS---KVTEAIRSRC----LNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEK---SNRSLRRAILSF 232 (365)
Q Consensus 164 Il~t~~~~---~l~~~l~sR~----~~i~~~~~~~~~~~~iL~~~~~~~~~-~i~~~~~~~i~~~---~~g~lr~ai~~l 232 (365)
|.++|..+ ++++.|..|+ .++.|+|++.+++.+||+..+..+.. .+-+.+++.+|+. ..||+|+|+..+
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~ 372 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVC 372 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence 77788776 5788888865 48999999999999999998887654 3446688888874 579999999988
Q ss_pred HHH
Q 017844 233 ETC 235 (365)
Q Consensus 233 ~~~ 235 (365)
+.+
T Consensus 373 R~a 375 (529)
T KOG2227|consen 373 RRA 375 (529)
T ss_pred HHH
Confidence 743
No 200
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.28 E-value=1.7e-10 Score=107.81 Aligned_cols=166 Identities=18% Similarity=0.276 Sum_probs=98.8
Q ss_pred CCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccc
Q 017844 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS 91 (365)
Q Consensus 12 ~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (365)
++++++.+...+.+...+..++ +++|+||||+|||++|+.++..+..... ...+....+ ++....
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~-~~~v~~VtF--HpsySY---------- 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKA-PQRVNMVQF--HQSYSY---------- 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcc-cceeeEEee--cccccH----------
Confidence 5667777888888877776554 4999999999999999999997644221 111111111 111110
Q ss_pred ccce-ecCCCCcCccc-hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-HHHHHHHHHhh------------
Q 017844 92 ANHV-ELSPSDAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-AQHSLRRTMEK------------ 156 (365)
Q Consensus 92 ~~~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-~~~~Ll~~le~------------ 156 (365)
.+++ .+.+...+... .....+++...... ..++.++||||+++-+.+ .+..++.+||.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~-------p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~ 311 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ-------PEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLT 311 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhc-------ccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeee
Confidence 1111 11222111110 11222333332221 124579999999988754 46667776652
Q ss_pred ----------hcCceeEEEEecCCC----cccHHHhccceeEEecC-CCHHHHHHHHH
Q 017844 157 ----------YSASCRLILCCNSSS----KVTEAIRSRCLNIRINS-PTEEQIVKVLE 199 (365)
Q Consensus 157 ----------~~~~~~~Il~t~~~~----~l~~~l~sR~~~i~~~~-~~~~~~~~iL~ 199 (365)
.|.++.+|.|.|..+ .++.++++|+..+++.+ ++...+.+++.
T Consensus 312 y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 312 YSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred ccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence 245677888888877 47899999999999987 45555555554
No 201
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.28 E-value=9e-11 Score=108.41 Aligned_cols=109 Identities=19% Similarity=0.290 Sum_probs=80.7
Q ss_pred CceEEEEeCCCCCC------------HHHHHHHHHHHhhhc----------CceeEEEEec----CCCcccHHHhccce-
Q 017844 130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYS----------ASCRLILCCN----SSSKVTEAIRSRCL- 182 (365)
Q Consensus 130 ~~~vliiDE~~~L~------------~~~~~~Ll~~le~~~----------~~~~~Il~t~----~~~~l~~~l~sR~~- 182 (365)
...||+|||+|++. ...|..||+++|... .++.||+... .+..+.|.+.-|+-
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 56799999999884 237889999998531 2334555433 35568999999995
Q ss_pred eEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhc
Q 017844 183 NIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCRVQ 238 (365)
Q Consensus 183 ~i~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~~~~i~~~~--------~g~lr~ai~~l~~~~~~ 238 (365)
++.+.+++.+++..+|.. .+..+|+ .++++++..||+.+ +--.|.+...++.+...
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d 403 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLED 403 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 899999999999999832 2234565 57899999999964 45678888888876543
No 202
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.2e-10 Score=109.92 Aligned_cols=188 Identities=14% Similarity=0.203 Sum_probs=121.2
Q ss_pred CCCccccCHHHHHHHHHHHHc------------CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 11 TLDQVIVHQDIAQNLKKLVTE------------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~------------~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
.|+++-|-.++++.+.+.+.- -+.+. +++|||||||||.+|-+++... ....+.+
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~~~fisv--------- 732 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---NLRFISV--------- 732 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEe---------
Confidence 588999999999988888742 12223 9999999999999999998742 0011111
Q ss_pred CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HHH
Q 017844 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------REA 146 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~~ 146 (365)
..+..+. .-.| .....+|+++..... .++.|+++||+|.+. ...
T Consensus 733 ------------KGPElL~---KyIG-aSEq~vR~lF~rA~~---------a~PCiLFFDEfdSiAPkRGhDsTGVTDRV 787 (952)
T KOG0735|consen 733 ------------KGPELLS---KYIG-ASEQNVRDLFERAQS---------AKPCILFFDEFDSIAPKRGHDSTGVTDRV 787 (952)
T ss_pred ------------cCHHHHH---HHhc-ccHHHHHHHHHHhhc---------cCCeEEEeccccccCcccCCCCCCchHHH
Confidence 1111111 0011 122346666665443 456899999999874 346
Q ss_pred HHHHHHHHhhh--cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 017844 147 QHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS 221 (365)
Q Consensus 147 ~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~ 221 (365)
.|.|+.-|+.- -.++.++.+|+.++-++|++.+-. ..+..+.|+..++.++++......... ++..++.+|..+
T Consensus 788 VNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T 866 (952)
T KOG0735|consen 788 VNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKT 866 (952)
T ss_pred HHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhc
Confidence 67777777643 234566666777778888987754 268889999999999999877644332 355677888866
Q ss_pred CC----CHHHHHHHHHHHH
Q 017844 222 NR----SLRRAILSFETCR 236 (365)
Q Consensus 222 ~g----~lr~ai~~l~~~~ 236 (365)
+| |+...+...+..+
T Consensus 867 ~g~tgADlq~ll~~A~l~a 885 (952)
T KOG0735|consen 867 DGFTGADLQSLLYNAQLAA 885 (952)
T ss_pred CCCchhhHHHHHHHHHHHH
Confidence 55 5544444444433
No 203
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.27 E-value=6.4e-11 Score=106.66 Aligned_cols=187 Identities=14% Similarity=0.130 Sum_probs=108.6
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (365)
Q Consensus 7 ~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (365)
+.|+-=.+.+-.++....+..++..++ +++|.||||+|||++++.+|+.+..+-. .+++...
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l~~~~~---rV~~~~~------------- 100 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARLNWPCV---RVNLDSH------------- 100 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHHCCCeE---EEEecCC-------------
Confidence 344444456667777777777776554 4999999999999999999998854321 1221110
Q ss_pred cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh----------
Q 017844 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK---------- 156 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~---------- 156 (365)
....+.+..... ...+.....++ ...++.. ......++++||++...++.++.|..+||.
T Consensus 101 --l~~~DliG~~~~--~l~~g~~~~~f-----~~GpL~~-A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~ 170 (327)
T TIGR01650 101 --VSRIDLVGKDAI--VLKDGKQITEF-----RDGILPW-ALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQN 170 (327)
T ss_pred --CChhhcCCCcee--eccCCcceeEE-----ecCcchh-HHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCc
Confidence 000000100000 00000000000 0001000 012336799999999999999999999873
Q ss_pred ----hcCceeEEEEecCCC------------cccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017844 157 ----YSASCRLILCCNSSS------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219 (365)
Q Consensus 157 ----~~~~~~~Il~t~~~~------------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~ 219 (365)
+.+..++|.++|... .++++.++|+. ++.+..|+.++-.+++...+....-..+++.++.+++
T Consensus 171 ~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~ 250 (327)
T TIGR01650 171 RVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVR 250 (327)
T ss_pred eEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHH
Confidence 112455677777533 36899999997 5689999999999999865421110113455666665
Q ss_pred Hc
Q 017844 220 KS 221 (365)
Q Consensus 220 ~~ 221 (365)
.+
T Consensus 251 la 252 (327)
T TIGR01650 251 VA 252 (327)
T ss_pred HH
Confidence 43
No 204
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.5e-11 Score=101.06 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=107.4
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+...++.|+. ..+.||+|+||||++|.|+. +..|+.+.+.+++.+.-..| ......+.+...
T Consensus 17 AvrdVSF~ae~Gei--~GlLG~NGAGKTT~LRmiat-lL~P~~G~v~idg~d~~~~p-----------~~vrr~IGVl~~ 82 (245)
T COG4555 17 AVRDVSFEAEEGEI--TGLLGENGAGKTTLLRMIAT-LLIPDSGKVTIDGVDTVRDP-----------SFVRRKIGVLFG 82 (245)
T ss_pred hhhheeEEeccceE--EEEEcCCCCCchhHHHHHHH-hccCCCceEEEeecccccCh-----------HHHhhhcceecC
Confidence 45555555667776 78999999999999999998 77899999988875441111 112334556666
Q ss_pred CcCccchhHHHHHHHHHHhcCCC---------------------------CCC------------CCCCceEEEEeCC-C
Q 017844 101 DAGFQDRYVVQEVIKEMAKNRPI---------------------------DTK------------GKRGFKVLVLNEV-D 140 (365)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~---------------------------~~~------------~~~~~~vliiDE~-~ 140 (365)
..+.+.+.+.++.+..++....+ .+| .-.+++++++||+ .
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~s 162 (245)
T COG4555 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTS 162 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 67778888888888776654332 111 1247899999998 8
Q ss_pred CCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEE
Q 017844 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (365)
Q Consensus 141 ~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~ 185 (365)
.|+-.+...+.+.+.......+.|+.+++.-.-.+++.+|+.+++
T Consensus 163 GLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh 207 (245)
T COG4555 163 GLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLH 207 (245)
T ss_pred CccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEe
Confidence 898888888888888776656666666666555578888876544
No 205
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.27 E-value=1.6e-10 Score=108.59 Aligned_cols=205 Identities=17% Similarity=0.178 Sum_probs=128.0
Q ss_pred CCCCCccccCHHHHHHHHHHHHcC-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844 9 PKTLDQVIVHQDIAQNLKKLVTEQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (365)
Q Consensus 9 P~~~~~iig~~~~~~~l~~~l~~~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (365)
+-+|++++|.......+...++.. ..+ .+++.|++||||.-+|++|-+.--......+.++|..+ |
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi---P--------- 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI---P--------- 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC---C---------
Confidence 348999999877777666666543 222 39999999999999999998743333334455555332 0
Q ss_pred cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------
Q 017844 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY--------- 157 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~--------- 157 (365)
..+-....+.+....+.... ...++ +.--..+..-+|+||+..|+...|..||+.|++.
T Consensus 309 e~LlESELFGye~GAFTGA~-----------~~GK~-GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~ 376 (560)
T COG3829 309 ETLLESELFGYEKGAFTGAS-----------KGGKP-GLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTK 376 (560)
T ss_pred HHHHHHHHhCcCCccccccc-----------cCCCC-cceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCC
Confidence 00011111222222111100 00000 0000123357999999999999999999999863
Q ss_pred --cCceeEEEEecCCC-------cccHHHhccceeEEecCCC----HHHHHHHHHHHHH----HcC--C-CCCHHHHHHH
Q 017844 158 --SASCRLILCCNSSS-------KVTEAIRSRCLNIRINSPT----EEQIVKVLEFIAK----KEG--L-QLPSGFATRL 217 (365)
Q Consensus 158 --~~~~~~Il~t~~~~-------~l~~~l~sR~~~i~~~~~~----~~~~~~iL~~~~~----~~~--~-~i~~~~~~~i 217 (365)
+.++++|.+||... .+-..+.-|..++.+.-|+ .+++-......+. +.+ + .++++++..+
T Consensus 377 ~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L 456 (560)
T COG3829 377 PIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALL 456 (560)
T ss_pred ceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHH
Confidence 34678998888764 3556677777665554443 3344444443333 333 2 3889999998
Q ss_pred HH-HcCCCHHHHHHHHHHHHh
Q 017844 218 AE-KSNRSLRRAILSFETCRV 237 (365)
Q Consensus 218 ~~-~~~g~lr~ai~~l~~~~~ 237 (365)
.+ .+.||+|+..|+++.+..
T Consensus 457 ~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 457 LRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HhCCCCchHHHHHHHHHHHHh
Confidence 88 689999999999999875
No 206
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.26 E-value=1e-11 Score=103.27 Aligned_cols=160 Identities=16% Similarity=0.277 Sum_probs=99.0
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc
Q 017844 11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (365)
++..-+|..++++.+.-.+..|.. +.+.||+|+||||++|++.. |..++.+.+.+++....... ++ ..
T Consensus 7 ~l~K~fg~~~VLkgi~l~v~~Gev--v~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~g~~~~~~~-----~~--~~-- 74 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSVEKGEV--VVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKK-----DI--LK-- 74 (240)
T ss_pred eeeEEeCCeEEecCcceeEcCCCE--EEEECCCCCCHHHHHHHHHC-CcCCCCceEEECCEeccchh-----hH--HH--
Confidence 344556777888888777878877 99999999999999999987 88899999999884330000 00 00
Q ss_pred cccceecCCCCcCccchhH-------------------HH----HHHHHH-----HhcCCCCCCC------------CCC
Q 017844 91 SANHVELSPSDAGFQDRYV-------------------VQ----EVIKEM-----AKNRPIDTKG------------KRG 130 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-------------------~~----~~l~~~-----~~~~~~~~~~------------~~~ 130 (365)
-...+.++.+.+..+...+ .+ +++..+ +...|..+|+ .-+
T Consensus 75 ~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred HHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 0001111111111111111 11 111111 1112222232 227
Q ss_pred ceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844 131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 131 ~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
++++++||+ ..|+++.....+..|.+........++.+|.-.+-..+-+|..
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrvi 207 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVI 207 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEE
Confidence 899999999 8899999999999999887666555555566666677777763
No 207
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.25 E-value=2.6e-10 Score=105.44 Aligned_cols=109 Identities=21% Similarity=0.305 Sum_probs=80.4
Q ss_pred CceEEEEeCCCCCC------------HHHHHHHHHHHhhhc----------CceeEEEEec----CCCcccHHHhccce-
Q 017844 130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYS----------ASCRLILCCN----SSSKVTEAIRSRCL- 182 (365)
Q Consensus 130 ~~~vliiDE~~~L~------------~~~~~~Ll~~le~~~----------~~~~~Il~t~----~~~~l~~~l~sR~~- 182 (365)
...||+|||+|++. ...|..||+++|... .++.||+... .++.+.|.+.-|+.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 55799999999884 247889999998631 2333444432 34568899999995
Q ss_pred eEEecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhc
Q 017844 183 NIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCRVQ 238 (365)
Q Consensus 183 ~i~~~~~~~~~~~~iL~~----~-------~~~~~~--~i~~~~~~~i~~~~--------~g~lr~ai~~l~~~~~~ 238 (365)
++.+.+++.+++.++|.. . +..+|+ .++++++..||+.+ +--.|.+...++.+...
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d 405 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 405 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 899999999999999843 2 234565 58899999999954 45678888888876544
No 208
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.24 E-value=7.4e-12 Score=113.17 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=100.7
Q ss_pred CCCcccc-CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844 11 TLDQVIV-HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (365)
Q Consensus 11 ~~~~iig-~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 89 (365)
++...+| ...+++.+.-.+..|.. +.|.||+|+||||+.+++++ +..++.+.+.+++...... ..
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei--~gllG~NGAGKTTllk~l~g-l~~p~~G~i~i~G~~~~~~-----------~~ 74 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEI--FGLLGPNGAGKTTLLKILAG-LLKPTSGEILVLGYDVVKE-----------PA 74 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeE--EEEECCCCCCHHHHHHHHhC-CcCCCceEEEEcCEeCccC-----------HH
Confidence 3444455 46666777767777776 89999999999999999999 6678888888887543000 00
Q ss_pred ccccceecCCCCcCccchhHHHHHHHHHHhcCCC---------------------------CCC------------CCCC
Q 017844 90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI---------------------------DTK------------GKRG 130 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------~~~------------~~~~ 130 (365)
.....+.+.++....++..++++.++.++..... .+| ..++
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence 1122244444444444444444444333322210 011 1247
Q ss_pred ceEEEEeCC-CCCCHHHHHHHHHHHhhhcCce-eEEEEecCCCcccHHHhccce
Q 017844 131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 131 ~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~-~~Il~t~~~~~l~~~l~sR~~ 182 (365)
++++|+||+ ..|++.....+.+.|.+..... ..|++++|...-...+.+|..
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~ 208 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI 208 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence 899999999 8899999999999999876654 456666655544455566653
No 209
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.22 E-value=4.1e-10 Score=103.05 Aligned_cols=208 Identities=16% Similarity=0.166 Sum_probs=118.9
Q ss_pred CCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceecccc-
Q 017844 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELT- 87 (365)
Q Consensus 12 ~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~- 87 (365)
|.-++||+..+..|-...-...+..+||.|+.|+||||++|+++..| .+-.. +-++.|+++|... |.+|...
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LL-p~~~~---V~gc~f~cdP~~P~~~c~~c~~k~ 91 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLL-PEIEV---VIGCPFNCDPDDPEEMCDECRAKG 91 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhC-Cccce---ecCCCCCCCCCChhhhhHHHHhhc
Confidence 66789999988877655445666669999999999999999999844 33221 2255565666554 1111000
Q ss_pred -----ccccccceecCCCCcCccc-----hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 88 -----TLSSANHVELSPSDAGFQD-----RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 88 -----~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
.......+.+.....+... ...+...++.--.....++-...++.|+++||+..|+...++.||..+++-
T Consensus 92 ~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG 171 (423)
T COG1239 92 DELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEG 171 (423)
T ss_pred cccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhC
Confidence 0000111122211111111 111222222100111111223557789999999999999999999999862
Q ss_pred -------------cCceeEEEEecCCC-cccHHHhccce-eEEec-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 017844 158 -------------SASCRLILCCNSSS-KVTEAIRSRCL-NIRIN-SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS 221 (365)
Q Consensus 158 -------------~~~~~~Il~t~~~~-~l~~~l~sR~~-~i~~~-~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~ 221 (365)
+.+..+|.+.|..+ .+-+.|++||. .+... +.+.++..+++.+....+ ..++..++.++. .
T Consensus 172 ~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~--~~Pe~f~~~~~~-~ 248 (423)
T COG1239 172 VNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFE--AVPEAFLEKYAD-A 248 (423)
T ss_pred CceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhh--cCcHHHHHHHHH-H
Confidence 22333444444333 68899999974 56654 456777888888776552 333444444443 3
Q ss_pred CCCHH
Q 017844 222 NRSLR 226 (365)
Q Consensus 222 ~g~lr 226 (365)
...+|
T Consensus 249 ~~~lR 253 (423)
T COG1239 249 QRALR 253 (423)
T ss_pred HHHHH
Confidence 34555
No 210
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.8e-11 Score=102.51 Aligned_cols=176 Identities=18% Similarity=0.264 Sum_probs=113.3
Q ss_pred CCCccccCHHHHHHHHHHHH----------c-C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 11 TLDQVIVHQDIAQNLKKLVT----------E-Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~----------~-~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
+|+.+-|-......+++.+. . | ..|. ++||||||+|||.++++++..+.+. +
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n-----------f---- 194 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVN-----------F---- 194 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCc-----------e----
Confidence 78888888888888887663 1 2 2333 9999999999999999999976221 1
Q ss_pred CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HHH
Q 017844 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------REA 146 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~~ 146 (365)
-...++..++ ..-......+++.+....+. .+.|+++||+|... ...
T Consensus 195 ---------l~v~ss~lv~----kyiGEsaRlIRemf~yA~~~---------~pciifmdeiDAigGRr~se~Ts~drei 252 (388)
T KOG0651|consen 195 ---------LKVVSSALVD----KYIGESARLIRDMFRYAREV---------IPCIIFMDEIDAIGGRRFSEGTSSDREI 252 (388)
T ss_pred ---------EEeeHhhhhh----hhcccHHHHHHHHHHHHhhh---------CceEEeehhhhhhccEEeccccchhHHH
Confidence 1111111111 11112223456665555443 33799999999762 345
Q ss_pred HHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHH
Q 017844 147 QHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATR 216 (365)
Q Consensus 147 ~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~--~~~i~~~~~~~ 216 (365)
+..|.+++++. -..+++|+++|+++.+.+++.+-. ..++.+.|+......+++-..+.- ...++.+++-.
T Consensus 253 qrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK 332 (388)
T KOG0651|consen 253 QRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILK 332 (388)
T ss_pred HHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHH
Confidence 66677776643 346899999999999999997744 267777777766666665443321 12566777777
Q ss_pred HHHHcCC
Q 017844 217 LAEKSNR 223 (365)
Q Consensus 217 i~~~~~g 223 (365)
+++..+|
T Consensus 333 ~~d~f~g 339 (388)
T KOG0651|consen 333 LVDGFNG 339 (388)
T ss_pred HHhccCh
Confidence 7776655
No 211
>PHA02244 ATPase-like protein
Probab=99.20 E-value=1.2e-09 Score=99.69 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=82.8
Q ss_pred HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc
Q 017844 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (365)
Q Consensus 23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (365)
..+..++..+.. ++|+||+|||||++|++++..+..+. +.+++.. +. .....+....
T Consensus 110 ~ri~r~l~~~~P--VLL~GppGtGKTtLA~aLA~~lg~pf---v~In~l~----------d~-------~~L~G~i~~~- 166 (383)
T PHA02244 110 ADIAKIVNANIP--VFLKGGAGSGKNHIAEQIAEALDLDF---YFMNAIM----------DE-------FELKGFIDAN- 166 (383)
T ss_pred HHHHHHHhcCCC--EEEECCCCCCHHHHHHHHHHHhCCCE---EEEecCh----------HH-------Hhhccccccc-
Confidence 455556655543 99999999999999999999753221 1111100 00 0000000000
Q ss_pred CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------hcCceeEEEEecCC-
Q 017844 103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK-----------YSASCRLILCCNSS- 170 (365)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~-----------~~~~~~~Il~t~~~- 170 (365)
+... ...++..+ .+..+++|||++.+.++++..|...+++ .+.+.++|+++|..
T Consensus 167 g~~~---dgpLl~A~-----------~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~ 232 (383)
T PHA02244 167 GKFH---ETPFYEAF-----------KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLG 232 (383)
T ss_pred cccc---chHHHHHh-----------hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCc
Confidence 0000 00111111 1336999999999999999999999863 13567899988863
Q ss_pred ----------CcccHHHhccceeEEecCCCH
Q 017844 171 ----------SKVTEAIRSRCLNIRINSPTE 191 (365)
Q Consensus 171 ----------~~l~~~l~sR~~~i~~~~~~~ 191 (365)
..+.+++++||..+.|..|+.
T Consensus 233 ~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 233 KGADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred cCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 357899999999999998874
No 212
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.20 E-value=7.8e-09 Score=95.58 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=128.5
Q ss_pred CCCceEEEEeCCCCCC-HHHHHHHHHHHhhhc-CceeEEEEecCCCc---ccHHHhcc--ceeEEecCCCHHHHHHHHHH
Q 017844 128 KRGFKVLVLNEVDKLS-REAQHSLRRTMEKYS-ASCRLILCCNSSSK---VTEAIRSR--CLNIRINSPTEEQIVKVLEF 200 (365)
Q Consensus 128 ~~~~~vliiDE~~~L~-~~~~~~Ll~~le~~~-~~~~~Il~t~~~~~---l~~~l~sR--~~~i~~~~~~~~~~~~iL~~ 200 (365)
.+..++++|..+.... .+....+......++ ..+.+++.++..++ ....+..- +.++.+.+++..++.+++..
T Consensus 72 F~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~ 151 (334)
T COG1466 72 FGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKK 151 (334)
T ss_pred ccCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHH
Confidence 4455899999987654 444555666666666 45555555544442 22222222 56899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC--CCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHH
Q 017844 201 IAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP--FKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQV 276 (365)
Q Consensus 201 ~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~--~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~ 276 (365)
.+.+.|+.+++++++.++...+||++.+.+.+++++.+... ++.++ .......+..+++++++++.+ +..++
T Consensus 152 ~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g----~~~~a 227 (334)
T COG1466 152 RAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKG----DVKKA 227 (334)
T ss_pred HHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCC----CHHHH
Confidence 99999999999999999999999999999999999988664 33333 222333445678999999985 44667
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH
Q 017844 277 RGKLYELLLNCVPPVVVLKRLLYELL 302 (365)
Q Consensus 277 ~~~l~~l~~~~~~~~~il~~l~~~l~ 302 (365)
...+++++..|++|..|+..+.+++.
T Consensus 228 ~~~l~~L~~~ge~p~~il~~l~~~f~ 253 (334)
T COG1466 228 LRLLRDLLLEGEEPLKLLAALTRQFR 253 (334)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 77788899999999999999988776
No 213
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.19 E-value=1.2e-09 Score=105.47 Aligned_cols=205 Identities=15% Similarity=0.115 Sum_probs=120.6
Q ss_pred CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
.+..++|.......+...+.. ....+++++|++|+||+++|+.+...-.......+.++|..+ +. . .
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~---~~-~-------~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAI---PE-N-------L 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCC---Ch-H-------H
Confidence 456788877777666666643 223348999999999999999997743222222233333221 00 0 0
Q ss_pred cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----------
Q 017844 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------- 158 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---------- 158 (365)
+ ....+.......... .....+........+++|||++.|+...|..|++.+++..
T Consensus 206 ~-~~~lfg~~~~~~~~~-------------~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 206 L-ESELFGYEKGAFTGA-------------VKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred H-HHHhcCCCCCCcCCC-------------ccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCcee
Confidence 0 000000000000000 0000000012334689999999999999999999998632
Q ss_pred -CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHH----HHHHHcC---CCCCHHHHHHHHH
Q 017844 159 -ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLE----FIAKKEG---LQLPSGFATRLAE 219 (365)
Q Consensus 159 -~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~----~~~~~~~---~~i~~~~~~~i~~ 219 (365)
.++++|++++... .+.+.+..|+. .|.++|+.. +++..+.. +.+.+.+ ..++++++..+..
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEA 351 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHh
Confidence 2567888887652 35566777775 455555532 23333333 3333333 4689999999988
Q ss_pred H-cCCCHHHHHHHHHHHHhcCC
Q 017844 220 K-SNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 220 ~-~~g~lr~ai~~l~~~~~~~~ 240 (365)
. +.||+|++.+.++.++..+.
T Consensus 352 ~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 352 HAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred CCCCChHHHHHHHHHHHHHhCC
Confidence 4 69999999999998876543
No 214
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.18 E-value=6e-11 Score=96.65 Aligned_cols=160 Identities=17% Similarity=0.274 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (365)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (365)
..+++.+...+..|.+ ++++||+|+||||+.+.|.++ ..++.+.+.+++.+. ..-.++...+ - ...+.++
T Consensus 15 ~~aL~~vs~~i~~Gef--~fl~GpSGAGKSTllkLi~~~-e~pt~G~i~~~~~dl-~~l~~~~iP~--L----RR~IGvV 84 (223)
T COG2884 15 REALRDVSFHIPKGEF--VFLTGPSGAGKSTLLKLIYGE-ERPTRGKILVNGHDL-SRLKGREIPF--L----RRQIGVV 84 (223)
T ss_pred chhhhCceEeecCceE--EEEECCCCCCHHHHHHHHHhh-hcCCCceEEECCeec-ccccccccch--h----hheeeeE
Confidence 4566777667777777 899999999999999999984 578888888888765 1111111000 0 0112222
Q ss_pred CCCcCcc------------------chhHH----HHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC
Q 017844 99 PSDAGFQ------------------DRYVV----QEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV 139 (365)
Q Consensus 99 ~~~~~~~------------------~~~~~----~~~l~~~~-----~~~~~~~~~------------~~~~~vliiDE~ 139 (365)
.++...- ....+ .+.++... ...|..+|+ -.++.+++-||+
T Consensus 85 FQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 85 FQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred eeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 2222111 11111 12222211 111112222 247899999999
Q ss_pred -CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecC
Q 017844 140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS 188 (365)
Q Consensus 140 -~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~ 188 (365)
.+|+++....+++++++.......|+++++...+..+.+.|+..++-..
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Gr 214 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGR 214 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCE
Confidence 8899999999999999987777777777787888888888887665443
No 215
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.17 E-value=3e-10 Score=105.40 Aligned_cols=204 Identities=16% Similarity=0.143 Sum_probs=128.6
Q ss_pred CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
.+.++||+..+...+...++- .....+||.|++||||.-+|++|-+.-.......+++||..+ |. .
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl---Pe---------s 288 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL---PE---------S 288 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc---ch---------H
Confidence 567899998888877777653 222339999999999999999998743333444455665433 00 0
Q ss_pred cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-----------
Q 017844 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY----------- 157 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~----------- 157 (365)
+...+.+......+. ..+.....- + -..+..-+++||+.-|+...|..|++.|.+.
T Consensus 289 LlESELFGHeKGAFT-----------GA~~~r~Gr-F-ElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 289 LLESELFGHEKGAFT-----------GAINTRRGR-F-ELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HHHHHHhcccccccc-----------cchhccCcc-e-eecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCcee
Confidence 000011111111000 000110000 0 0123357999999999999999999999753
Q ss_pred cCceeEEEEecCCC-------cccHHHhccceeEEecCCCHHH-------HH-HHHHHHHHHcCC---CCCHHHHHHHHH
Q 017844 158 SASCRLILCCNSSS-------KVTEAIRSRCLNIRINSPTEEQ-------IV-KVLEFIAKKEGL---QLPSGFATRLAE 219 (365)
Q Consensus 158 ~~~~~~Il~t~~~~-------~l~~~l~sR~~~i~~~~~~~~~-------~~-~iL~~~~~~~~~---~i~~~~~~~i~~ 219 (365)
+-++++|.+||..- ++-..+.-|..++.+.-|+..+ +. .++++...+.|. .+++++++.+.+
T Consensus 356 kVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 356 KVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 23578888888653 3556677777666655454333 22 233444444444 689999999998
Q ss_pred -HcCCCHHHHHHHHHHHHhcC
Q 017844 220 -KSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 220 -~~~g~lr~ai~~l~~~~~~~ 239 (365)
.+.||+|+..|+++.++..+
T Consensus 436 y~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 57899999999999988755
No 216
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.17 E-value=6.1e-09 Score=88.06 Aligned_cols=190 Identities=18% Similarity=0.262 Sum_probs=122.2
Q ss_pred ccCCCCCCccccCHHHHHHHH----HHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 6 KYRPKTLDQVIVHQDIAQNLK----KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 6 k~rP~~~~~iig~~~~~~~l~----~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
.+.|-.+.+++|-+..++.|. ..+++..-.|+|++|..|+|||++++++..++......-
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL---------------- 116 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRL---------------- 116 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeE----------------
Confidence 445567788899766655444 344333334599999999999999999998775443221
Q ss_pred eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHh----h
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTME----K 156 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-~~~~~~Ll~~le----~ 156 (365)
+++...+.. ..-.+++.+.. ...+-|++.|+...=. ..+...|-..|| .
T Consensus 117 -------------VEV~k~dl~-----~Lp~l~~~Lr~--------~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~ 170 (287)
T COG2607 117 -------------VEVDKEDLA-----TLPDLVELLRA--------RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEG 170 (287)
T ss_pred -------------EEEcHHHHh-----hHHHHHHHHhc--------CCceEEEEecCCCCCCCchHHHHHHHHhcCCccc
Confidence 333332221 12234444332 2345689999975433 344555555554 4
Q ss_pred hcCceeEEEEecCCCcccH----------------------HHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 017844 157 YSASCRLILCCNSSSKVTE----------------------AIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213 (365)
Q Consensus 157 ~~~~~~~Il~t~~~~~l~~----------------------~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~ 213 (365)
.|.++.|..++|...-++. .+.+|+ ..+.|.+++.++-.+++...++..|+.++++.
T Consensus 171 rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~ 250 (287)
T COG2607 171 RPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEE 250 (287)
T ss_pred CCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5667777777765442221 234465 47999999999999999999999999998755
Q ss_pred HHH-----HHHHcCCCHHHHHHHHHHHHh
Q 017844 214 ATR-----LAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 214 ~~~-----i~~~~~g~lr~ai~~l~~~~~ 237 (365)
++. -....+.+-|.|-+..+.++.
T Consensus 251 l~~eAl~WAt~rg~RSGR~A~QF~~~~~g 279 (287)
T COG2607 251 LHAEALQWATTRGGRSGRVAWQFIRDLAG 279 (287)
T ss_pred HHHHHHHHHHhcCCCccHhHHHHHHHHHh
Confidence 443 334556788888888776654
No 217
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.16 E-value=7.9e-10 Score=102.14 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=90.3
Q ss_pred cccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccc
Q 017844 15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94 (365)
Q Consensus 15 iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (365)
++|++.+...+..++..+.. ++|.||||+|||++++.+|+.+..+ .+.+.+..
T Consensus 26 ~~g~~~~~~~~l~a~~~~~~--vll~G~PG~gKT~la~~lA~~l~~~---~~~i~~t~---------------------- 78 (329)
T COG0714 26 VVGDEEVIELALLALLAGGH--VLLEGPPGVGKTLLARALARALGLP---FVRIQCTP---------------------- 78 (329)
T ss_pred eeccHHHHHHHHHHHHcCCC--EEEECCCCccHHHHHHHHHHHhCCC---eEEEecCC----------------------
Confidence 67888888777777766654 9999999999999999999977421 11222211
Q ss_pred eecCCCCcCccchhHHHHHHHHHH----hcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----------C-
Q 017844 95 VELSPSDAGFQDRYVVQEVIKEMA----KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------A- 159 (365)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----------~- 159 (365)
++.+++.-+.. .......... ...++ ..... .++++||+++.++..+++|+..|++.. .
T Consensus 79 -~l~p~d~~G~~--~~~~~~~~~~~~~~~~gpl--~~~~~-~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~ 152 (329)
T COG0714 79 -DLLPSDLLGTY--AYAALLLEPGEFRFVPGPL--FAAVR-VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLP 152 (329)
T ss_pred -CCCHHHhcCch--hHhhhhccCCeEEEecCCc--ccccc-eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCC
Confidence 11111111110 0000000000 00111 01111 599999999999999999999998721 1
Q ss_pred ceeEEEEe-c-----CCCcccHHHhccc-eeEEecCCCHHHHHHHH
Q 017844 160 SCRLILCC-N-----SSSKVTEAIRSRC-LNIRINSPTEEQIVKVL 198 (365)
Q Consensus 160 ~~~~Il~t-~-----~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL 198 (365)
...++++| | ....+++++++|| ..+.++.|+.++...++
T Consensus 153 ~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 153 PPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred CCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence 11234444 4 2235899999999 78999988444444433
No 218
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=7.4e-11 Score=102.22 Aligned_cols=157 Identities=18% Similarity=0.293 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc---------eecCCCcceeccccccc
Q 017844 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW---------KIDAGSRNIDLELTTLS 90 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~ 90 (365)
.+++.+.-.+..|.+ +.+.||+|+||||+++++.+ +..|..+.+.+.+... ++.|.....+.. ...+
T Consensus 18 ~vl~~i~l~v~~G~~--~~iiGPNGaGKSTLlK~iLG-ll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~-fP~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEI--TALIGPNGAGKSTLLKAILG-LLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRS-FPIT 93 (254)
T ss_pred eeeeccEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCcCCcceEEEccccccccccCCeEEEcCcccccCCC-CCcC
Confidence 466666666777766 89999999999999999999 6788888888776532 222222111110 0000
Q ss_pred cccceecCCC-CcCc------cchhHHHHHHHHHHhc----CCC-CCC------------CCCCceEEEEeCC-CCCCHH
Q 017844 91 SANHVELSPS-DAGF------QDRYVVQEVIKEMAKN----RPI-DTK------------GKRGFKVLVLNEV-DKLSRE 145 (365)
Q Consensus 91 ~~~~~~~~~~-~~~~------~~~~~~~~~l~~~~~~----~~~-~~~------------~~~~~~vliiDE~-~~L~~~ 145 (365)
..+++.+..- ..+. .+...+.+.++.+... +++ .+| ..++++++++||+ ..++..
T Consensus 94 V~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~ 173 (254)
T COG1121 94 VKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173 (254)
T ss_pred HHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHH
Confidence 0011111100 0010 1112333333332111 111 112 2357899999998 889999
Q ss_pred HHHHHHHHHhhhcCc-eeEEEEecCCCcccHHHhccc
Q 017844 146 AQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRC 181 (365)
Q Consensus 146 ~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~~~l~sR~ 181 (365)
.+..+..+|.+.... ..+++++++... ..+..+|.
T Consensus 174 ~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~v 209 (254)
T COG1121 174 GQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRV 209 (254)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEE
Confidence 999999999887654 445555555543 34444554
No 219
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.13 E-value=2.6e-09 Score=103.82 Aligned_cols=204 Identities=16% Similarity=0.167 Sum_probs=121.6
Q ss_pred CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (365)
Q Consensus 11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
.+.+++|.......+...+.. ....+++++|++|+|||++|+++...........+.++|..+ . . ..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~-~--~--------~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI-P--K--------DL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCC-C--H--------HH
Confidence 467788887766666555543 222339999999999999999998743322223333333221 0 0 00
Q ss_pred cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----------
Q 017844 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------- 158 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---------- 158 (365)
+ ....+... .+.+.. +.....+.........++|||++.|+...|..|++.+++..
T Consensus 205 ~-~~~lfg~~---~g~~~~----------~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 205 I-ESELFGHE---KGAFTG----------ANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred H-HHHhcCCC---CCCCCC----------CCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 0 00000000 000000 00000000011223578999999999999999999998632
Q ss_pred -CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHHH----HcCC---CCCHHHHHHHHH
Q 017844 159 -ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAK----KEGL---QLPSGFATRLAE 219 (365)
Q Consensus 159 -~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~~----~~~~---~i~~~~~~~i~~ 219 (365)
.++++|++++... .+.+.+..|+. .|.++|+.. +++..++...++ +.+. .++++++..+.+
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 2457888887542 35577888874 566666643 445545444433 3332 588999999988
Q ss_pred -HcCCCHHHHHHHHHHHHhcC
Q 017844 220 -KSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 220 -~~~g~lr~ai~~l~~~~~~~ 239 (365)
.+.||+|+..+.++.++..+
T Consensus 351 ~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 351 LAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CCCCChHHHHHHHHHHHHHhC
Confidence 57999999999999887654
No 220
>PRK12377 putative replication protein; Provisional
Probab=99.13 E-value=1.1e-09 Score=96.06 Aligned_cols=152 Identities=18% Similarity=0.270 Sum_probs=87.2
Q ss_pred cccCCCCCCcccc----CHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844 5 DKYRPKTLDQVIV----HQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (365)
Q Consensus 5 ~k~rP~~~~~iig----~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~ 78 (365)
..++..+|+.+.. +..++......+.. ....+++|+||+|+|||+++.++++.+.......+++....+
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l----- 140 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV----- 140 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH-----
Confidence 3456678888863 34455555544432 222459999999999999999999988643322111111000
Q ss_pred CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC--CCCCHHHHHHHHHHHhh
Q 017844 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTMEK 156 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~--~~L~~~~~~~Ll~~le~ 156 (365)
+........ +.....+.++.+ .+.++|||||+ +..+...+..|..+++.
T Consensus 141 ----------------~~~l~~~~~--~~~~~~~~l~~l-----------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~ 191 (248)
T PRK12377 141 ----------------MSRLHESYD--NGQSGEKFLQEL-----------CKVDLLVLDEIGIQRETKNEQVVLNQIIDR 191 (248)
T ss_pred ----------------HHHHHHHHh--ccchHHHHHHHh-----------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 000000000 000011222221 34589999999 55677888899999987
Q ss_pred hcC-ceeEEEEecCCC-----cccHHHhccc-----eeEEecCCC
Q 017844 157 YSA-SCRLILCCNSSS-----KVTEAIRSRC-----LNIRINSPT 190 (365)
Q Consensus 157 ~~~-~~~~Il~t~~~~-----~l~~~l~sR~-----~~i~~~~~~ 190 (365)
... ...+|++||-.. .+.+.+.||. ..+.|...+
T Consensus 192 R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 192 RTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred HHhcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 654 467888888553 2445566664 347776654
No 221
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.13 E-value=8.6e-11 Score=99.77 Aligned_cols=151 Identities=19% Similarity=0.262 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+...+..|.. +.+.|++||||||+++++++ +..+..|.+.+++... .+...... ....+.++.+
T Consensus 22 ~l~~VS~~i~~Ge~--lgivGeSGsGKSTL~r~l~G-l~~p~~G~I~~~G~~~--~~~~~~~~-------~~~~VQmVFQ 89 (252)
T COG1124 22 ALNNVSLEIERGET--LGIVGESGSGKSTLARLLAG-LEKPSSGSILLDGKPL--APKKRAKA-------FYRPVQMVFQ 89 (252)
T ss_pred hhcceeEEecCCCE--EEEEcCCCCCHHHHHHHHhc-ccCCCCceEEECCccc--Cccccchh-------hccceeEEec
Confidence 55555556666766 99999999999999999999 7889999999998644 11100000 0001111111
Q ss_pred Cc--CccchhH--------------------HHHHHHHH------HhcCCCCCCC------------CCCceEEEEeCC-
Q 017844 101 DA--GFQDRYV--------------------VQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV- 139 (365)
Q Consensus 101 ~~--~~~~~~~--------------------~~~~l~~~------~~~~~~~~~~------------~~~~~vliiDE~- 139 (365)
+. ......+ +.+.++.+ ....|..+|+ ..+++++|+||+
T Consensus 90 Dp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt 169 (252)
T COG1124 90 DPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT 169 (252)
T ss_pred CCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence 11 0111111 22222221 1112222232 247899999998
Q ss_pred CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeE
Q 017844 140 DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 140 ~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
..|+...|..+++++.+.. .+..+++++++.. +...+.+|+.++
T Consensus 170 SaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm 215 (252)
T COG1124 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVM 215 (252)
T ss_pred hhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeee
Confidence 8899999999999887754 3467888887654 556777887543
No 222
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.12 E-value=5.1e-10 Score=107.75 Aligned_cols=168 Identities=21% Similarity=0.310 Sum_probs=100.3
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee---ccc
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID---LEL 86 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~---~~~ 86 (365)
..|++++||..+++.+...+..+ .|++|.||||+||||+++.+++ +..+..+...+++..+ ....+.... ...
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~-llp~~~~~~~le~~~i-~s~~g~~~~~~~~~~ 264 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQG-ILPPLTNEEAIETARI-WSLVGKLIDRKQIKQ 264 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhc-ccCCCCCcEEEecccc-ccchhhhcccccccc
Confidence 37899999999999888877555 3499999999999999999998 4455444444443322 000000000 000
Q ss_pred cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------
Q 017844 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY--------- 157 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~--------- 157 (365)
..+..+.+..... ..+.......+-.+ ......+++|||++.+++..++.|++.||+.
T Consensus 265 ~Pf~~p~~s~s~~------------~~~ggg~~~~pG~i-~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~ 331 (499)
T TIGR00368 265 RPFRSPHHSASKP------------ALVGGGPIPLPGEI-SLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASA 331 (499)
T ss_pred CCccccccccchh------------hhhCCccccchhhh-hccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCc
Confidence 0000000000000 00000000000000 1223479999999999999999999999863
Q ss_pred ----cCceeEEEEecCCC-----------------------cccHHHhccce-eEEecCCCHHHH
Q 017844 158 ----SASCRLILCCNSSS-----------------------KVTEAIRSRCL-NIRINSPTEEQI 194 (365)
Q Consensus 158 ----~~~~~~Il~t~~~~-----------------------~l~~~l~sR~~-~i~~~~~~~~~~ 194 (365)
+.++.+|.++|... ++..++++|+. .+.+++++.+++
T Consensus 332 ~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 332 KIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred ceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 24567888877421 47778899985 788888877654
No 223
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.12 E-value=5.3e-11 Score=108.59 Aligned_cols=149 Identities=20% Similarity=0.265 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCC
Q 017844 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (365)
.+++.+.-.+..|.. +.|.||+|+||||+++++++ +..++.|.+.+++.+....+. .....+.+.+
T Consensus 21 ~~l~~vsl~i~~Gei--~gllGpNGaGKSTLl~~l~G-l~~p~~G~v~i~G~~~~~~~~-----------~~~~~ig~v~ 86 (306)
T PRK13537 21 LVVDGLSFHVQRGEC--FGLLGPNGAGKTTTLRMLLG-LTHPDAGSISLCGEPVPSRAR-----------HARQRVGVVP 86 (306)
T ss_pred EEEecceEEEeCCcE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEecccchH-----------HHHhcEEEEe
Confidence 345555555556655 89999999999999999998 667888888887754311000 0011122222
Q ss_pred CCcCccchhHHHHHHHH------------------HHhcCCC---------CCC------------CCCCceEEEEeCC-
Q 017844 100 SDAGFQDRYVVQEVIKE------------------MAKNRPI---------DTK------------GKRGFKVLVLNEV- 139 (365)
Q Consensus 100 ~~~~~~~~~~~~~~l~~------------------~~~~~~~---------~~~------------~~~~~~vliiDE~- 139 (365)
++...+...++.+.+.. +.....+ .+| ...+++++++||+
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 22222211122222211 1110000 111 1347899999998
Q ss_pred CCCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCcccHHHhcccee
Q 017844 140 DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 140 ~~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
..|++.++..+.+.+.+.... ..+|++|++.+ ..+.+.+|+..
T Consensus 167 ~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~i 210 (306)
T PRK13537 167 TGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCV 210 (306)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 889999999999999887543 45555555544 44566677643
No 224
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.12 E-value=4.9e-11 Score=100.90 Aligned_cols=149 Identities=16% Similarity=0.248 Sum_probs=109.8
Q ss_pred ccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccce
Q 017844 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (365)
Q Consensus 16 ig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (365)
.|...+++.+...+..|++ +.|.||+|+||||+.|.|.+ +..++.+.+.+++.+.. ....+.+
T Consensus 12 Fg~k~av~~isf~v~~G~i--~GllG~NGAGKTTtfRmILg-lle~~~G~I~~~g~~~~--------------~~~~~rI 74 (300)
T COG4152 12 FGDKKAVDNISFEVPPGEI--FGLLGPNGAGKTTTFRMILG-LLEPTEGEITWNGGPLS--------------QEIKNRI 74 (300)
T ss_pred cCceeeecceeeeecCCeE--EEeecCCCCCccchHHHHhc-cCCccCceEEEcCcchh--------------hhhhhhc
Confidence 4556677777777777777 89999999999999999999 67888888888875541 1123347
Q ss_pred ecCCCCcCccchhHHHHHHHHHHhcCCC---------------------------CCC------------CCCCceEEEE
Q 017844 96 ELSPSDAGFQDRYVVQEVIKEMAKNRPI---------------------------DTK------------GKRGFKVLVL 136 (365)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------~~~------------~~~~~~vlii 136 (365)
.+.|.+.+.+.+.++.+.+..++....+ .+| .-.+|.++|+
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 8889999988888888888777765543 111 1247899999
Q ss_pred eCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccc
Q 017844 137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (365)
Q Consensus 137 DE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~ 181 (365)
||+ ..|++-..+.|.+.+-+.......|+.++|...-.+.+.++.
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhh
Confidence 997 889999888888888877666656666665554445565554
No 225
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.12 E-value=5.8e-09 Score=95.18 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=65.7
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------CceeEEEEecCCC-------cccHHHhccceeEEecCC-
Q 017844 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCLNIRINSP- 189 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------~~~~~Il~t~~~~-------~l~~~l~sR~~~i~~~~~- 189 (365)
.++.|+-++|+.+.+.+.++.|+..+++.. .+..||+++|..+ +..+++++||..+.++.+
T Consensus 235 aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l 314 (361)
T smart00763 235 ANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCL 314 (361)
T ss_pred ccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcC
Confidence 456799999999999999999999998631 1123455555442 567999999998888655
Q ss_pred CHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHH
Q 017844 190 TEEQIVKVLEFIAKKE---GLQLPSGFATRLAEK 220 (365)
Q Consensus 190 ~~~~~~~iL~~~~~~~---~~~i~~~~~~~i~~~ 220 (365)
+.++-.++.++.+... +..+.|.+++.++..
T Consensus 315 ~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 315 RVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred CHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 5566667777666543 456777777766654
No 226
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.3e-09 Score=108.38 Aligned_cols=191 Identities=19% Similarity=0.225 Sum_probs=128.0
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
.+|+++-|-+.++..+++++.. + ..|. ++|+||||+|||..|+++|...-... ..+.+..
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-~kisffm------ 334 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-RKISFFM------ 334 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-cccchhh------
Confidence 4799999999999999988731 1 1233 99999999999999999998542111 1111100
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----------H
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E 145 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----------~ 145 (365)
-...+... ..........+.++++... ..+.|++.||+|.|.+ .
T Consensus 335 ------------rkgaD~ls----kwvgEaERqlrllFeeA~k---------~qPSIIffdeIdGlapvrSskqEqih~S 389 (1080)
T KOG0732|consen 335 ------------RKGADCLS----KWVGEAERQLRLLFEEAQK---------TQPSIIFFDEIDGLAPVRSSKQEQIHAS 389 (1080)
T ss_pred ------------hcCchhhc----cccCcHHHHHHHHHHHHhc---------cCceEEeccccccccccccchHHHhhhh
Confidence 00000010 0111111234444444332 3458999999998743 1
Q ss_pred HHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017844 146 AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK 220 (365)
Q Consensus 146 ~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~ 220 (365)
....|+-+|...+ +.+.+|.+||.++.++++++++. ..++|+-|+.+...+++.-.-.+-.-.++......+++.
T Consensus 390 IvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~ 469 (1080)
T KOG0732|consen 390 IVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEE 469 (1080)
T ss_pred HHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Confidence 2346777777654 34677778999999999998875 379999999999999998766665567889999999998
Q ss_pred cCCCHHHHHHHH
Q 017844 221 SNRSLRRAILSF 232 (365)
Q Consensus 221 ~~g~lr~ai~~l 232 (365)
+.|-.+.-+..|
T Consensus 470 t~gy~gaDlkaL 481 (1080)
T KOG0732|consen 470 TSGYGGADLKAL 481 (1080)
T ss_pred ccccchHHHHHH
Confidence 887766654443
No 227
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.10 E-value=2e-10 Score=97.89 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc--CCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (365)
+++.+.-.+..|.. +.|.||+|+||||+++.+++ +. .+..+.+.+++.... . ......+.+.
T Consensus 24 ~l~~~~~~i~~Ge~--~~l~G~nGsGKStLl~~i~G-l~~~~~~~G~i~~~g~~~~-~------------~~~~~~i~~~ 87 (194)
T cd03213 24 LLKNVSGKAKPGEL--TAIMGPSGAGKSTLLNALAG-RRTGLGVSGEVLINGRPLD-K------------RSFRKIIGYV 87 (194)
T ss_pred ceecceEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCCceEEEECCEeCc-h------------HhhhheEEEc
Confidence 44455444555554 99999999999999999998 55 777788877775430 0 0001113333
Q ss_pred CCCcCccchhHHHHHHHHHHhcCCC----------CCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEE
Q 017844 99 PSDAGFQDRYVVQEVIKEMAKNRPI----------DTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILC 166 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~ 166 (365)
+++.......++.+.+........+ ......+++++++||+ ..|+......+.+.|.+... ...+|++
T Consensus 88 ~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 167 (194)
T cd03213 88 PQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167 (194)
T ss_pred cCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3332222222333433221111011 0011346789999998 78999999999999987643 4567777
Q ss_pred ecCCCcccHHHhccceeE
Q 017844 167 CNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 167 t~~~~~l~~~l~sR~~~i 184 (365)
+++.......+.+|+.++
T Consensus 168 sh~~~~~~~~~~d~v~~l 185 (194)
T cd03213 168 IHQPSSEIFELFDKLLLL 185 (194)
T ss_pred ecCchHHHHHhcCEEEEE
Confidence 777653334455555443
No 228
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.5e-09 Score=102.36 Aligned_cols=176 Identities=19% Similarity=0.274 Sum_probs=118.0
Q ss_pred CccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 13 DQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
.++.|-......++..+.. | +.|. +++|||||+|||.+++++|++..+ ..+.+++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a---~~~~i~~--------- 251 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA---FLFLING--------- 251 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc---eeEeccc---------
Confidence 4556666666666665531 2 2233 999999999999999999997521 1111111
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----------HHHHH
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------EAQHS 149 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----------~~~~~ 149 (365)
+..+.-.+ .......+..+....... .+.+++|||++.+.+ .....
T Consensus 252 ------------peli~k~~----gEte~~LR~~f~~a~k~~--------~psii~IdEld~l~p~r~~~~~~e~Rv~sq 307 (693)
T KOG0730|consen 252 ------------PELISKFP----GETESNLRKAFAEALKFQ--------VPSIIFIDELDALCPKREGADDVESRVVSQ 307 (693)
T ss_pred ------------HHHHHhcc----cchHHHHHHHHHHHhccC--------CCeeEeHHhHhhhCCcccccchHHHHHHHH
Confidence 11111111 111222444444433222 168999999998864 23456
Q ss_pred HHHHHhhhc--CceeEEEEecCCCcccHHHhc-cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q 017844 150 LRRTMEKYS--ASCRLILCCNSSSKVTEAIRS-RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL 225 (365)
Q Consensus 150 Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s-R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~l 225 (365)
|+.+++... .++.++.+++.+..+++++++ |+. .+.+.-|+..+..++++...++.+.. ++..+..++..+.|-.
T Consensus 308 lltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 308 LLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYV 386 (693)
T ss_pred HHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchh
Confidence 788887765 567777788899999999997 774 79999999999999999998887766 6788888888877755
No 229
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.9e-09 Score=102.40 Aligned_cols=172 Identities=19% Similarity=0.195 Sum_probs=110.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceec-CCCCcCccchhHHH
Q 017844 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQ 111 (365)
Q Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 111 (365)
+.++++|+||+|+|||.|+++++.++..+... |+++ .++......-..++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~-----------------------------hv~~v~Cs~l~~~~~e~iQ 480 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIA-----------------------------HVEIVSCSTLDGSSLEKIQ 480 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccce-----------------------------EEEEEechhccchhHHHHH
Confidence 33459999999999999999999987533221 1221 12222222222344
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----------HHHHH----HHHHHhhh---cCceeEEEEecCCCccc
Q 017844 112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------EAQHS----LRRTMEKY---SASCRLILCCNSSSKVT 174 (365)
Q Consensus 112 ~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----------~~~~~----Ll~~le~~---~~~~~~Il~t~~~~~l~ 174 (365)
..+..+..... ...+.|+++|++|.+.. ...+. |.+.+..+ ...+.||.+.+....+.
T Consensus 481 k~l~~vfse~~-----~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 481 KFLNNVFSEAL-----WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHH-----hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 44443332211 23568999999998732 11122 22333333 23345677777777788
Q ss_pred HHHhcc--ce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Q 017844 175 EAIRSR--CL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR-SLRRAILSFETCRVQ 238 (365)
Q Consensus 175 ~~l~sR--~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g-~lr~ai~~l~~~~~~ 238 (365)
+.+.|- ++ ++.+++|...++.++|+.++++.......+.++.++..++| ++++..-..+++...
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~ 623 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHE 623 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHH
Confidence 877664 33 78999999999999999999988777778889999999988 455555555554433
No 230
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.10 E-value=2.5e-10 Score=94.74 Aligned_cols=104 Identities=26% Similarity=0.417 Sum_probs=64.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc-CCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI 114 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (365)
+++|.||+|+|||.+++++++.+. +.....+.+++..+ +..... .. .+...+
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~----------------~~~~~~---------~~--~~~~l~ 57 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY----------------SEGDDV---------ES--SVSKLL 57 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH----------------CSHHHC---------SC--HCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc----------------cccchH---------Hh--hhhhhh
Confidence 489999999999999999999887 55555555555443 000000 00 000111
Q ss_pred HHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhhh-----------cCceeEEEEecCCC
Q 017844 115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------EAQHSLRRTMEKY-----------SASCRLILCCNSSS 171 (365)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----------~~~~~Ll~~le~~-----------~~~~~~Il~t~~~~ 171 (365)
.. .+. ........||++||+|+..+ ..++.|++.||+- -.++.||+++|-..
T Consensus 58 ~~----~~~-~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 58 GS----PPG-YVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HH----TTC-HHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hc----ccc-eeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 10 000 00011224999999999999 9999999999863 13566777777554
No 231
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.09 E-value=3.9e-09 Score=102.85 Aligned_cols=158 Identities=19% Similarity=0.286 Sum_probs=94.5
Q ss_pred ccccCHHHHHHHHHHHHcCCC------------CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 14 QVIVHQDIAQNLKKLVTEQDC------------PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 14 ~iig~~~~~~~l~~~l~~~~~------------~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
.++|++.++..+.-.+-+|.. .|+||+|+||+|||++++.+++.. ... .+..+.. +
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~-~r~---~~~~~~~----~---- 271 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTA-PRA---VYTTGKG----S---- 271 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHc-Ccc---eEcCCCC----C----
Confidence 467888887777666655421 169999999999999999999843 111 1111100 0
Q ss_pred eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~--- 158 (365)
+. ..+..... .+... .+. ......+ ......+++|||++.+++..+..|+..|++..
T Consensus 272 -~~----------~~l~~~~~--~~~~~-g~~---~~~~G~l---~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i 331 (509)
T smart00350 272 -SA----------VGLTAAVT--RDPET-REF---TLEGGAL---VLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISI 331 (509)
T ss_pred -Cc----------CCccccce--EccCc-ceE---EecCccE---EecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEE
Confidence 00 00000000 00000 000 0000001 12234699999999999999999999998632
Q ss_pred ----------CceeEEEEecCCC-------------cccHHHhccce--eEEecCCCHHHHHHHHHHHHH
Q 017844 159 ----------ASCRLILCCNSSS-------------KVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAK 203 (365)
Q Consensus 159 ----------~~~~~Il~t~~~~-------------~l~~~l~sR~~--~i~~~~~~~~~~~~iL~~~~~ 203 (365)
..+.+|.++|... .+++++.|||. .+-...++.+.-.+++++++.
T Consensus 332 ~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 332 AKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 3455666666432 58899999993 455678888887777777654
No 232
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.09 E-value=6.4e-10 Score=97.28 Aligned_cols=153 Identities=16% Similarity=0.250 Sum_probs=87.2
Q ss_pred cccCCCCCCcccc----CHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844 5 DKYRPKTLDQVIV----HQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (365)
Q Consensus 5 ~k~rP~~~~~iig----~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~ 78 (365)
+.|++.+|+++.. +..++..+..+++.- ...+++|+|++|+|||+++.+++.++.......+.+....+
T Consensus 64 ~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l----- 138 (244)
T PRK07952 64 PLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI----- 138 (244)
T ss_pred ccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH-----
Confidence 5678889999863 344666666666532 22359999999999999999999987543322221111111
Q ss_pred CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC--CHHHHHHHHHHHhh
Q 017844 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTMEK 156 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L--~~~~~~~Ll~~le~ 156 (365)
+........ .......+.++.+ ...++|||||++.. +......|..+++.
T Consensus 139 ----------------~~~l~~~~~-~~~~~~~~~l~~l-----------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~ 190 (244)
T PRK07952 139 ----------------MSAMKDTFS-NSETSEEQLLNDL-----------SNVDLLVIDEIGVQTESRYEKVIINQIVDR 190 (244)
T ss_pred ----------------HHHHHHHHh-hccccHHHHHHHh-----------ccCCEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 000000000 0000111222222 24589999999655 33445567778876
Q ss_pred hc-CceeEEEEecCCCc-----ccHHHhccc-----eeEEecCCC
Q 017844 157 YS-ASCRLILCCNSSSK-----VTEAIRSRC-----LNIRINSPT 190 (365)
Q Consensus 157 ~~-~~~~~Il~t~~~~~-----l~~~l~sR~-----~~i~~~~~~ 190 (365)
.. ....+|++||-... +.+.+.||+ ..+.|...+
T Consensus 191 Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 191 RSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred HHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCCc
Confidence 43 35678888886542 445566665 367776544
No 233
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.09 E-value=2.6e-09 Score=88.39 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=76.5
Q ss_pred cccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc
Q 017844 15 VIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92 (365)
Q Consensus 15 iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (365)
++|.....+.+.+.++. ....+++|+|++||||+.+|++|...-.......+.++|..+. + . ....
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~--~---------~-~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALP--E---------E-LLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS---H---------H-HHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhh--c---------c-hhhh
Confidence 46776666666666543 2223499999999999999999987433333344555553320 0 0 0000
Q ss_pred cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-----------cCce
Q 017844 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----------SASC 161 (365)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-----------~~~~ 161 (365)
..+............. -...+. ......++|||++.|++..|..|+++|++. +.++
T Consensus 69 ~LFG~~~~~~~~~~~~-~~G~l~------------~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSD-KKGLLE------------QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHHEBCSSSSTTTSSE-BEHHHH------------HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhhccccccccccccc-cCCcee------------eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccc
Confidence 0011111000000000 001111 123368999999999999999999999853 2367
Q ss_pred eEEEEecCCC-------cccHHHhccceeE
Q 017844 162 RLILCCNSSS-------KVTEAIRSRCLNI 184 (365)
Q Consensus 162 ~~Il~t~~~~-------~l~~~l~sR~~~i 184 (365)
++|++|+... .+.+.+..|...+
T Consensus 136 RiI~st~~~l~~~v~~g~fr~dLy~rL~~~ 165 (168)
T PF00158_consen 136 RIIASTSKDLEELVEQGRFREDLYYRLNVF 165 (168)
T ss_dssp EEEEEESS-HHHHHHTTSS-HHHHHHHTTE
T ss_pred eEEeecCcCHHHHHHcCCChHHHHHHhceE
Confidence 8888888653 3445555554433
No 234
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.08 E-value=2.8e-09 Score=94.40 Aligned_cols=111 Identities=12% Similarity=0.185 Sum_probs=75.8
Q ss_pred CceEEEEeCCCCCC---HHHHHHHHHHHhhhcC--ceeEEEEecCCC----cccHHHhccceeEEecCCCHHH-HHHHHH
Q 017844 130 GFKVLVLNEVDKLS---REAQHSLRRTMEKYSA--SCRLILCCNSSS----KVTEAIRSRCLNIRINSPTEEQ-IVKVLE 199 (365)
Q Consensus 130 ~~~vliiDE~~~L~---~~~~~~Ll~~le~~~~--~~~~Il~t~~~~----~l~~~l~sR~~~i~~~~~~~~~-~~~iL~ 199 (365)
+.+++||||+|.+- ...|..++..|..... .+.+|++.+... .-++.+.+|+..+.+++...++ ....|.
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~ 224 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLA 224 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHH
Confidence 45899999998862 3345566666655432 456777765433 4568999999999988776554 444444
Q ss_pred HHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844 200 FIAKKEGL-----QLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 200 ~~~~~~~~-----~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~ 240 (365)
..-..... --+++....|...++|.+++..+++..++..+-
T Consensus 225 s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI 270 (302)
T PF05621_consen 225 SFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAI 270 (302)
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 33322111 135677899999999999999999998776653
No 235
>PRK08116 hypothetical protein; Validated
Probab=99.08 E-value=8.8e-10 Score=98.33 Aligned_cols=154 Identities=17% Similarity=0.269 Sum_probs=88.3
Q ss_pred ccCCCCCCcccc---CHHHHHHHHHHHHc----CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 6 KYRPKTLDQVIV---HQDIAQNLKKLVTE----QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 6 k~rP~~~~~iig---~~~~~~~l~~~l~~----~~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
+|+-.+|+.+.. +..+....+.+++. .. ...++|+|++|+|||+|+.++++++.......++++...+
T Consensus 78 ~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l---- 153 (268)
T PRK08116 78 KFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL---- 153 (268)
T ss_pred HHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH----
Confidence 455567887753 33344444444432 11 1239999999999999999999988644322222111110
Q ss_pred CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC--CCCCHHHHHHHHHHHh
Q 017844 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTME 155 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~--~~L~~~~~~~Ll~~le 155 (365)
+................++++.+ ...++|||||+ +..+...+..|+.+++
T Consensus 154 -----------------l~~i~~~~~~~~~~~~~~~~~~l-----------~~~dlLviDDlg~e~~t~~~~~~l~~iin 205 (268)
T PRK08116 154 -----------------LNRIKSTYKSSGKEDENEIIRSL-----------VNADLLILDDLGAERDTEWAREKVYNIID 205 (268)
T ss_pred -----------------HHHHHHHHhccccccHHHHHHHh-----------cCCCEEEEecccCCCCCHHHHHHHHHHHH
Confidence 00000000000000111222222 23479999999 5567778888999998
Q ss_pred hh-cCceeEEEEecCCCc-----ccHHHhcc----ceeEEecCCCH
Q 017844 156 KY-SASCRLILCCNSSSK-----VTEAIRSR----CLNIRINSPTE 191 (365)
Q Consensus 156 ~~-~~~~~~Il~t~~~~~-----l~~~l~sR----~~~i~~~~~~~ 191 (365)
.. .....+|++||.... +...+.|| |..+.|..++.
T Consensus 206 ~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 206 SRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 64 344668888886642 45677788 56788887764
No 236
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=5.8e-10 Score=93.25 Aligned_cols=138 Identities=20% Similarity=0.335 Sum_probs=80.7
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (365)
.+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++......+ . . ....+.+.+++......
T Consensus 22 ~i~~Ge~--~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~~--~--~-------~~~~i~~~~q~~~~~~~ 87 (173)
T cd03230 22 TVEKGEI--YGLLGPNGAGKTTLIKIILG-LLKPDSGEIKVLGKDIKKEP--E--E-------VKRRIGYLPEEPSLYEN 87 (173)
T ss_pred EEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcccch--H--h-------hhccEEEEecCCccccC
Confidence 3444444 89999999999999999999 55677787777765431000 0 0 01123333333222222
Q ss_pred hHHHHHHH-------HHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCcccHHHh
Q 017844 108 YVVQEVIK-------EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIR 178 (365)
Q Consensus 108 ~~~~~~l~-------~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~~~l~ 178 (365)
.++.+.+. .++-.. ....+++++++||+ ..|+......+.+.+++.... ..+|+++++.. ....+.
T Consensus 88 ~tv~~~~~LS~G~~qrv~lar----al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~ 162 (173)
T cd03230 88 LTVRENLKLSGGMKQRLALAQ----ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLC 162 (173)
T ss_pred CcHHHHhhcCHHHHHHHHHHH----HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhC
Confidence 12323221 111111 11346799999998 789999999999999886543 55666666644 334444
Q ss_pred ccceeE
Q 017844 179 SRCLNI 184 (365)
Q Consensus 179 sR~~~i 184 (365)
+|+..+
T Consensus 163 d~i~~l 168 (173)
T cd03230 163 DRVAIL 168 (173)
T ss_pred CEEEEE
Confidence 554443
No 237
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.07 E-value=3.2e-09 Score=105.06 Aligned_cols=106 Identities=18% Similarity=0.202 Sum_probs=72.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhh---------------------cCceeEEEEecCC--CcccHHHhccce----
Q 017844 130 GFKVLVLNEVDKLSREAQHSLRRTMEKY---------------------SASCRLILCCNSS--SKVTEAIRSRCL---- 182 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~---------------------~~~~~~Il~t~~~--~~l~~~l~sR~~---- 182 (365)
+..+++|||++.|++..|..|++.|++. +.++++|++++.. ..+.+++++|+.
T Consensus 217 ngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v 296 (608)
T TIGR00764 217 HKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGY 296 (608)
T ss_pred CCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeE
Confidence 3469999999999999999999999642 1245677777754 468899999986
Q ss_pred eEEec---CCCHHHHH---HHHHHHHHHcC--CCCCHHHHHHHHHHc----------CCCHHHHHHHHHHH
Q 017844 183 NIRIN---SPTEEQIV---KVLEFIAKKEG--LQLPSGFATRLAEKS----------NRSLRRAILSFETC 235 (365)
Q Consensus 183 ~i~~~---~~~~~~~~---~iL~~~~~~~~--~~i~~~~~~~i~~~~----------~g~lr~ai~~l~~~ 235 (365)
.+.|+ +.+.+... .++.+.+++.| -.+++++++.+.+.+ ..+.|+.-+++..+
T Consensus 297 ~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 297 EVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 23443 23444443 44444455553 268899999998632 23467777777665
No 238
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=6.4e-10 Score=96.12 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=38.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+..
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~ 200 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLL 200 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEE
Confidence 47799999998 78999999999999987643 455666666544 33344455543
No 239
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.06 E-value=9.8e-09 Score=99.62 Aligned_cols=204 Identities=17% Similarity=0.167 Sum_probs=121.5
Q ss_pred CCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844 12 LDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (365)
Q Consensus 12 ~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 89 (365)
...++|.......+...+.. +...++++.|++|+||+++++++...-.......+.++|..+ +. +. +
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~---~~----~~----~ 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAI---PK----DL----I 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCC---CH----HH----H
Confidence 34577766555555444432 222349999999999999999998743222222233333211 00 00 0
Q ss_pred ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------
Q 017844 90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------- 158 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----------- 158 (365)
....+.. ..+.+.. +.....+.........++|||++.|+...|..|++.+++..
T Consensus 202 -~~~lfg~---~~~~~~~----------~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 202 -ESELFGH---EKGAFTG----------ANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred -HHHhcCC---CCCCCCC----------cccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceee
Confidence 0000000 0000000 00000000011223579999999999999999999998632
Q ss_pred CceeEEEEecCCC-------cccHHHhccce--eEEecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHH-
Q 017844 159 ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIAK----KEG---LQLPSGFATRLAE- 219 (365)
Q Consensus 159 ~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~iL~~~~~----~~~---~~i~~~~~~~i~~- 219 (365)
.++++|++++... .+.+.+..|+. .|+++|+. .+++..++..++. ..+ ..++++++..+.+
T Consensus 268 ~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 268 VDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred eeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 2457777776543 35557777764 67777776 6677766655443 233 3689999999998
Q ss_pred HcCCCHHHHHHHHHHHHhcCC
Q 017844 220 KSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 220 ~~~g~lr~ai~~l~~~~~~~~ 240 (365)
.+.||+|+..+.++.++..+.
T Consensus 348 ~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 348 RWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred CCCChHHHHHHHHHHHHHhCC
Confidence 469999999999999877643
No 240
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.06 E-value=1.6e-10 Score=105.39 Aligned_cols=147 Identities=16% Similarity=0.219 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (365)
++.+.-.+..|.. +.|.||+|+||||+++++++ +..++.|.+.+++......+. .. ...+.+.+++
T Consensus 9 l~~vs~~i~~Ge~--~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~----~~-------~~~i~~~~q~ 74 (302)
T TIGR01188 9 VDGVNFKVREGEV--FGFLGPNGAGKTTTIRMLTT-LLRPTSGTARVAGYDVVREPR----KV-------RRSIGIVPQY 74 (302)
T ss_pred EeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccCHH----HH-------HhhcEEecCC
Confidence 3334334445554 89999999999999999999 567888888887754311000 00 0011122221
Q ss_pred cCccchhH----------------------HHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CC
Q 017844 102 AGFQDRYV----------------------VQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DK 141 (365)
Q Consensus 102 ~~~~~~~~----------------------~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~ 141 (365)
.......+ +.+.++.+.- .....+| ...+++++++||+ ..
T Consensus 75 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 75 ASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred CCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 11111111 1122222110 0000111 1247899999998 88
Q ss_pred CCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 142 LSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 142 L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
|++.....+.+.+.+... +..+|++|++.+ ....+.+|+.+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~ 196 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAI 196 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 999999999999988753 345666666544 34455666643
No 241
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.06 E-value=1.1e-10 Score=107.78 Aligned_cols=149 Identities=20% Similarity=0.285 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+...+..|.. +.|.||+|+||||+++++++ +..++.|.+.+++......+. . ....+.+.++
T Consensus 56 ~l~~is~~i~~Gei--~gLlGpNGaGKSTLl~~L~G-l~~p~~G~i~i~G~~~~~~~~----~-------~~~~ig~v~q 121 (340)
T PRK13536 56 VVNGLSFTVASGEC--FGLLGPNGAGKSTIARMILG-MTSPDAGKITVLGVPVPARAR----L-------ARARIGVVPQ 121 (340)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCceEEEECCEECCcchH----H-------HhccEEEEeC
Confidence 33333334444544 89999999999999999999 667888888888754310000 0 0001111111
Q ss_pred CcCccchhHHHHH------------------HHHHHhcCCC---------CCC------------CCCCceEEEEeCC-C
Q 017844 101 DAGFQDRYVVQEV------------------IKEMAKNRPI---------DTK------------GKRGFKVLVLNEV-D 140 (365)
Q Consensus 101 ~~~~~~~~~~~~~------------------l~~~~~~~~~---------~~~------------~~~~~~vliiDE~-~ 140 (365)
+.......++.+. ...+.....+ .+| ...+++++|+||+ .
T Consensus 122 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred CccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 1111111111111 1111111111 111 1247899999998 8
Q ss_pred CCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCcccHHHhccceeE
Q 017844 141 KLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 141 ~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.|++..+..+.+.+.+.... ..+|++|++. ...+.+.+|+..+
T Consensus 202 gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il 245 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVL 245 (340)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEE
Confidence 89999999999999886443 4455555544 4445667776543
No 242
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.05 E-value=1.2e-08 Score=98.76 Aligned_cols=203 Identities=13% Similarity=0.123 Sum_probs=115.1
Q ss_pred CCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844 12 LDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (365)
Q Consensus 12 ~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 89 (365)
+..++|.......+...+.. ....+++++|++|+||+++|+.+...........+.++|..+ . + ...+
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~-~-~--~~~~------ 211 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAAL-P-E--SLLE------ 211 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCC-C-H--HHHH------
Confidence 44567765555555444432 222349999999999999999997643222222233333221 0 0 0000
Q ss_pred ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------
Q 017844 90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------- 158 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----------- 158 (365)
...+.......... .....+........+++|||++.|+...|..|++.+++..
T Consensus 212 --~~lfg~~~~~~~~~-------------~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 212 --SELFGHEKGAFTGA-------------QTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred --HHhcCCCCCCCCCC-------------CCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 00000000000000 0000000011234689999999999999999999997631
Q ss_pred CceeEEEEecCCC-------cccHHHhccce--eEEecCCC--HHHHHHHHHHH----HHHcC---CCCCHHHHHHHHH-
Q 017844 159 ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFI----AKKEG---LQLPSGFATRLAE- 219 (365)
Q Consensus 159 ~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~iL~~~----~~~~~---~~i~~~~~~~i~~- 219 (365)
.++++|++++... .+.+.+..|+. .+.++|+. .+++..+.... ..+.+ ..+++++++.+..
T Consensus 277 ~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 356 (457)
T PRK11361 277 VDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW 356 (457)
T ss_pred eceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC
Confidence 2467888887542 34556666664 45555554 23444333333 32223 3689999999998
Q ss_pred HcCCCHHHHHHHHHHHHhcC
Q 017844 220 KSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 220 ~~~g~lr~ai~~l~~~~~~~ 239 (365)
.+.||+|++.+.++.++..+
T Consensus 357 ~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 357 SWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred CCCCcHHHHHHHHHHHHHhC
Confidence 46999999999999887654
No 243
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.05 E-value=2.7e-10 Score=91.71 Aligned_cols=52 Identities=25% Similarity=0.350 Sum_probs=40.5
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhhc-------------C------ceeEEEEecCCC----cccHHHhccc
Q 017844 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------A------SCRLILCCNSSS----KVTEAIRSRC 181 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~-------------~------~~~~Il~t~~~~----~l~~~l~sR~ 181 (365)
+..+++|||++..+++.++.|+.++++.. . +.++|+++|... .+.+++++||
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 45899999999999999999999997421 1 278888888887 7999999996
No 244
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.05 E-value=6.3e-10 Score=96.73 Aligned_cols=159 Identities=18% Similarity=0.298 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-------Ccceeccccc-----
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-------SRNIDLELTT----- 88 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~----- 88 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..+...+. .....+....
T Consensus 19 il~~~s~~i~~G~~--~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 19 ALKGVSLSIEKGEF--VAIVGPSGSGKSTLLNILGG-LDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred EEeeeEEEEcCCCE--EEEEcCCCCCHHHHHHHHhC-CcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 34444444445554 99999999999999999999 557777888777754411010 0000000000
Q ss_pred -cccccceecCCCCcCccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844 89 -LSSANHVELSPSDAGFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREA 146 (365)
Q Consensus 89 -~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~ 146 (365)
.+..+.+.+.....+... ...+.+.++.+.- ..+..+| ...+++++++||+ ..|++..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 000000000000000000 0011222222110 0000111 1347899999998 8899999
Q ss_pred HHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 147 ~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
...+.+.+.+... +..+|+++++.+.+ . +.+|+.++
T Consensus 176 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~-~-~~d~v~~l 213 (218)
T cd03255 176 GKEVMELLRELNKEAGTTIVVVTHDPELA-E-YADRIIEL 213 (218)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCHHHH-h-hhcEEEEe
Confidence 9999999988643 56777788776543 3 55554433
No 245
>PRK15115 response regulator GlrR; Provisional
Probab=99.04 E-value=1.6e-08 Score=97.62 Aligned_cols=109 Identities=18% Similarity=0.266 Sum_probs=75.5
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------CceeEEEEecCCC-------cccHHHhccce--eEEecCCC
Q 017844 131 FKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT 190 (365)
Q Consensus 131 ~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~ 190 (365)
...++|||++.|+...|..|++.+++.. .++++|++|+... .+.+.+..|+. .|.++|+.
T Consensus 229 ~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr 308 (444)
T PRK15115 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALA 308 (444)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChH
Confidence 3689999999999999999999998632 1457777776532 23345555554 45555553
Q ss_pred H--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Q 017844 191 E--EQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 191 ~--~~~~~iL~~~~~----~~~---~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~~ 239 (365)
. +++..++...+. ..+ ..+++++++.+.... .||+|++.+.++.++..+
T Consensus 309 ~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred hccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 2 244444344333 223 258999999999965 999999999999887643
No 246
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.04 E-value=6.4e-10 Score=93.80 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=78.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc---CccchhHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA---GFQDRYVVQEV 113 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 113 (365)
+.|.||+|+||||+++++++ +..+..+.+.+++......+.. ......+.+.+++. ......++.+.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~---------~~~~~~i~~~~q~~~~~~~~~~~t~~e~ 98 (182)
T cd03215 29 VGIAGLVGNGQTELAEALFG-LRPPASGEITLDGKPVTRRSPR---------DAIRAGIAYVPEDRKREGLVLDLSVAEN 98 (182)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCccCHH---------HHHhCCeEEecCCcccCcccCCCcHHHH
Confidence 89999999999999999999 4567778887777543100000 00011233333321 12222234444
Q ss_pred HHHHHhc-----C--CCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 114 IKEMAKN-----R--PIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 114 l~~~~~~-----~--~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+...... . .+......+++++++||+ ..|+......+.+.+.+... ...+|+++++.+ ..+.+.+|+..
T Consensus 99 l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~ 176 (182)
T cd03215 99 IALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILV 176 (182)
T ss_pred HHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 3221100 0 000112357799999998 88999999999999987643 456666666644 23344444433
No 247
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.03 E-value=8e-09 Score=102.08 Aligned_cols=110 Identities=10% Similarity=0.164 Sum_probs=74.7
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhhc-------------CceeEEEEecCCC---cccHHHhccce-eEEec-CCC
Q 017844 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS---KVTEAIRSRCL-NIRIN-SPT 190 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-------------~~~~~Il~t~~~~---~l~~~l~sR~~-~i~~~-~~~ 190 (365)
.+..++++||++.+++..++.|+..|++.. ..+.+|.++|..+ .+.+++.+|+. .+.+. .++
T Consensus 83 A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 83 APRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS 162 (589)
T ss_pred CCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC
Confidence 344699999999999999999999998642 3455666555444 58899999985 34443 445
Q ss_pred HHHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHHhc
Q 017844 191 EEQIVKVLEFIAK-----------------------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETCRVQ 238 (365)
Q Consensus 191 ~~~~~~iL~~~~~-----------------------~~~~~i~~~~~~~i~~~~---~-g~lr~ai~~l~~~~~~ 238 (365)
.++..+++++... ...+.++++.+++|++.+ + .++|..+.++..+.+.
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAH 237 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 5555665554321 135678899888887743 2 3478877777654443
No 248
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.03 E-value=1.7e-10 Score=98.28 Aligned_cols=59 Identities=19% Similarity=0.416 Sum_probs=48.5
Q ss_pred CCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 12 ~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
.+.-+++..+++.+.-.+..|.+ ++|.||+||||||+.+.|-+ +..++.+.+.+++.+.
T Consensus 7 vsk~y~~~~av~~v~l~I~~gef--~vliGpSGsGKTTtLkMINr-Liept~G~I~i~g~~i 65 (309)
T COG1125 7 VSKRYGNKKAVDDVNLTIEEGEF--LVLIGPSGSGKTTTLKMINR-LIEPTSGEILIDGEDI 65 (309)
T ss_pred eehhcCCceeeeeeeEEecCCeE--EEEECCCCCcHHHHHHHHhc-ccCCCCceEEECCeec
Confidence 33445667777777777777777 89999999999999999987 8899999999998765
No 249
>PRK08181 transposase; Validated
Probab=99.03 E-value=1.4e-09 Score=96.56 Aligned_cols=133 Identities=17% Similarity=0.257 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc
Q 017844 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (365)
Q Consensus 23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (365)
..+..|+..+ .+++|+||+|+|||+++.+++.++.......+++....+ +.......
T Consensus 97 ~~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L---------------------~~~l~~a~ 153 (269)
T PRK08181 97 AAGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL---------------------VQKLQVAR 153 (269)
T ss_pred HHHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH---------------------HHHHHHHH
Confidence 3444576644 349999999999999999999977543221111111000 00000000
Q ss_pred CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC--CHHHHHHHHHHHhhhcCceeEEEEecCCCc--------
Q 017844 103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSSSK-------- 172 (365)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L--~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~-------- 172 (365)
. .....+.++.+ .+.+++||||++.+ +...+..|+++++....+..+|++||.+..
T Consensus 154 ~---~~~~~~~l~~l-----------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 154 R---ELQLESAIAKL-----------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPD 219 (269)
T ss_pred h---CCcHHHHHHHH-----------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCC
Confidence 0 00111222221 24579999999765 455667899999876555678888886642
Q ss_pred --ccHHHhcc----ceeEEecCCCHH
Q 017844 173 --VTEAIRSR----CLNIRINSPTEE 192 (365)
Q Consensus 173 --l~~~l~sR----~~~i~~~~~~~~ 192 (365)
+-.++.+| |..+.|...+..
T Consensus 220 ~~~a~aildRL~h~~~~i~~~g~s~R 245 (269)
T PRK08181 220 PAMTLAAVDRLVHHATIFEMNVESYR 245 (269)
T ss_pred ccchhhHHHhhhcCceEEecCCccch
Confidence 22344555 457777765543
No 250
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.02 E-value=4.8e-09 Score=103.49 Aligned_cols=53 Identities=26% Similarity=0.447 Sum_probs=47.0
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q 017844 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (365)
Q Consensus 7 ~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (365)
-+|+.|++++||++++..|..++..++ +++|+||||+||||++++++..+.+.
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHcChH
Confidence 468899999999999999999988774 59999999999999999999976543
No 251
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.02 E-value=4.8e-10 Score=98.43 Aligned_cols=159 Identities=14% Similarity=0.205 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-C---cceeccccc------cc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-S---RNIDLELTT------LS 90 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~---~~~~~~~~~------~~ 90 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+. . ....+.... .+
T Consensus 15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 15 VVNGVSLSVKQGEI--VGLLGPNGAGKTTTFYMIVG-LVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred eeccceeEecCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 44444444555555 89999999999999999998 557777888877754311000 0 000000000 00
Q ss_pred cccceecCCCCcCccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844 91 SANHVELSPSDAGFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS 149 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~ 149 (365)
..+.+.+.....+... ...+.+.++.+.- .....+| ...+++++++||+ ..|+......
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 171 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 0000000000000000 0011122222110 0000111 1247899999998 8899999999
Q ss_pred HHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 150 Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+.+.+.+... +..+|++|++.+. ...+.+|+.+
T Consensus 172 ~~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~ 205 (232)
T cd03218 172 IQKIIKILKDRGIGVLITDHNVRE-TLSITDRAYI 205 (232)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 9998887643 4567777776553 3445566543
No 252
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.02 E-value=6.7e-09 Score=88.90 Aligned_cols=199 Identities=21% Similarity=0.179 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceec
Q 017844 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (365)
+.+++..+...+..++.- +.++|+-|+|||.+.|++...+.......+.++...+ .. ..+......++
T Consensus 36 h~e~l~~l~~~i~d~qg~-~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~------s~-----~~~~~ai~~~l 103 (269)
T COG3267 36 HNEALLMLHAAIADGQGI-LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTL------SD-----ATLLEAIVADL 103 (269)
T ss_pred hhHHHHHHHHHHhcCCce-EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcch------hH-----HHHHHHHHHHh
Confidence 567777888888776632 8999999999999999777655433332223322111 00 00000000111
Q ss_pred CCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh---hhcCceeEEEEecCCCc--
Q 017844 98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME---KYSASCRLILCCNSSSK-- 172 (365)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le---~~~~~~~~Il~t~~~~~-- 172 (365)
.. .....-....+..-+.+..... ...++.++++||++.+..++.+.|..+.+ +......++++....-.
T Consensus 104 ~~-~p~~~~~~~~e~~~~~L~al~~----~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~ 178 (269)
T COG3267 104 ES-QPKVNVNAVLEQIDRELAALVK----KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPR 178 (269)
T ss_pred cc-CccchhHHHHHHHHHHHHHHHH----hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchh
Confidence 11 1110111111122222222111 12344799999999999888887665553 33344556666653321
Q ss_pred ----ccHHHhcccee-EEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 173 ----VTEAIRSRCLN-IRINSPTEEQIVKVLEFIAKKEGL---QLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 173 ----l~~~l~sR~~~-i~~~~~~~~~~~~iL~~~~~~~~~---~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
....+..||.. +.++|++.++...+|+..++..+. -++++++..++..+.|-+|...+...
T Consensus 179 lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 179 LRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 23466778886 999999999999999999887654 36799999999999996655444443
No 253
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.01 E-value=2.3e-10 Score=104.13 Aligned_cols=169 Identities=13% Similarity=0.248 Sum_probs=94.6
Q ss_pred CccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc-ceeccccc---
Q 017844 13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTT--- 88 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~--- 88 (365)
..-+|...+++.+.-.+..|.+ +.|.||+||||||++|+||+ +..++.+.+.+++..+...|-.+ ...+.|..
T Consensus 12 ~k~yg~~~av~~isl~i~~Gef--~~lLGPSGcGKTTlLR~IAG-fe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YAL 88 (352)
T COG3842 12 SKSFGDFTAVDDISLDIKKGEF--VTLLGPSGCGKTTLLRMIAG-FEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYAL 88 (352)
T ss_pred eeecCCeeEEecceeeecCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhhcccceeecCccc
Confidence 3445555666667667777777 88999999999999999999 88999999999998773333221 11110010
Q ss_pred ---cccccceecCCCCcCccchhHHHHHHHHHH---------hcCCCCCCC------------CCCceEEEEeCC-CCCC
Q 017844 89 ---LSSANHVELSPSDAGFQDRYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (365)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~------------~~~~~vliiDE~-~~L~ 143 (365)
++..+.+.+.-.-.....+..+++...++. ...+..+|+ ..+++++++||+ ..|+
T Consensus 89 FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD 168 (352)
T COG3842 89 FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168 (352)
T ss_pred CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchh
Confidence 011111111111001011111222222221 111212221 347899999998 7788
Q ss_pred HHHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhccceeEE
Q 017844 144 REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRCLNIR 185 (365)
Q Consensus 144 ~~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR~~~i~ 185 (365)
......+...+.+. ..+..+|++|++.+.-. ++.+|+.+.+
T Consensus 169 ~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl-~msDrI~Vm~ 211 (352)
T COG3842 169 AKLREQMRKELKELQRELGITFVYVTHDQEEAL-AMSDRIAVMN 211 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhccceEEcc
Confidence 77665555555443 22678999999877422 3455654433
No 254
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.01 E-value=4.6e-10 Score=97.23 Aligned_cols=155 Identities=16% Similarity=0.165 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccc-c-----
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN-H----- 94 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 94 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++......+.... + ....... .
T Consensus 26 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~i~~~~~~~~--i--~~~~q~~~~~~~~t 98 (214)
T PRK13543 26 VFGPLDFHVDAGEA--LLVQGDNGAGKTTLLRVLAG-LLHVESGQIQIDGKTATRGDRSRF--M--AYLGHLPGLKADLS 98 (214)
T ss_pred eeecceEEECCCCE--EEEEcCCCCCHHHHHHHHhC-CCCCCCeeEEECCEEccchhhhhc--e--EEeecCcccccCCc
Confidence 34444444445544 89999999999999999999 567777888777654311000000 0 0000000 0
Q ss_pred ----eecCCCCcCccchhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844 95 ----VELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR 152 (365)
Q Consensus 95 ----~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~ 152 (365)
+.+.....+.......++.+..+.- .....+| ...+++++++||+ ..|+......+.+
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (214)
T PRK13543 99 TLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNR 178 (214)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0000000000000111222222110 0000111 1247899999998 8899999999999
Q ss_pred HHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 153 TMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 153 ~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+.+... +..+|++|++.+.+ +.+.+|...
T Consensus 179 ~l~~~~~~~~tiii~sH~~~~~-~~~~~~i~~ 209 (214)
T PRK13543 179 MISAHLRGGGAALVTTHGAYAA-PPVRTRMLT 209 (214)
T ss_pred HHHHHHhCCCEEEEEecChhhh-hhhcceEEE
Confidence 9876533 45566666665533 344455433
No 255
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.01 E-value=1.2e-09 Score=94.86 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=39.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|+..
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~ 210 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL-VETYRHRTLT 210 (216)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 47899999998 88999999999999987643 4567777776553 3344455443
No 256
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.00 E-value=1.5e-09 Score=90.27 Aligned_cols=157 Identities=15% Similarity=0.258 Sum_probs=91.0
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC-----ccceeccccceecCCCcceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA-----EKVKVENKTWKIDAGSRNIDL 84 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~i~~~~~~~~~~~~~~~~~~ 84 (365)
+++.-.+|..++++.+.-.+..+.. .-|.||+||||||++|++-+ ++...+ |.+.+++.++ ..+.-...++
T Consensus 11 ~~l~~yYg~~~aL~~i~l~i~~~~V--TAlIGPSGcGKST~LR~lNR-mndl~~~~r~~G~v~~~g~ni-~~~~~d~~~l 86 (253)
T COG1117 11 RDLNLYYGDKHALKDINLDIPKNKV--TALIGPSGCGKSTLLRCLNR-MNDLIPGARVEGEVLLDGKNI-YDPKVDVVEL 86 (253)
T ss_pred cceeEEECchhhhccCceeccCCce--EEEECCCCcCHHHHHHHHHh-hcccCcCceEEEEEEECCeec-cCCCCCHHHH
Confidence 4566678888888888777766666 78999999999999999977 554443 5566666655 3331111110
Q ss_pred cc--c-ccccc--------cceecCCCCcCccchhHHHHHHHHH----H---------hcCCCCCCCC------------
Q 017844 85 EL--T-TLSSA--------NHVELSPSDAGFQDRYVVQEVIKEM----A---------KNRPIDTKGK------------ 128 (365)
Q Consensus 85 ~~--~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~----~---------~~~~~~~~~~------------ 128 (365)
-. . .+..+ +.+.+.+.-.+..+ ..+.+..+.. + .....++|+.
T Consensus 87 Rr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA 165 (253)
T COG1117 87 RRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA 165 (253)
T ss_pred HHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence 00 0 00000 01111111111111 1122222111 1 1122233322
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
-++.|+++||+ ..|++-+...+-+++.+...+..+|++|++..
T Consensus 166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmq 209 (253)
T COG1117 166 VKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ 209 (253)
T ss_pred cCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHH
Confidence 27899999998 78888877778888888878888999998765
No 257
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.00 E-value=2.3e-10 Score=99.72 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=96.7
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceec-ccc-----
Q 017844 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDL-ELT----- 87 (365)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~-~~~----- 87 (365)
+...+++.+...+..|.+ +.+.||+|||||||++++++ +..+..|.+.+++......+.. +...+ .+.
T Consensus 13 ~~~~il~~ls~~i~~G~i--~~iiGpNG~GKSTLLk~l~g-~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 13 GGKPILDDLSFSIPKGEI--TGILGPNGSGKSTLLKCLAG-LLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred CCeeEEecceEEecCCcE--EEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 445555666666666666 89999999999999999999 6788889999998755111100 00000 000
Q ss_pred ccccccceecCCCC----c---CccchhHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CCC
Q 017844 88 TLSSANHVELSPSD----A---GFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (365)
Q Consensus 88 ~~~~~~~~~~~~~~----~---~~~~~~~~~~~l~~~-----~~~~~~~~~~------------~~~~~vliiDE~-~~L 142 (365)
.++..+.+.+.... . +..+...+.+.++.. +...-..+|+ .++++|+++||+ ..|
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L 169 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169 (258)
T ss_pred CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence 00000011111000 0 111111222223222 1111111221 347799999999 789
Q ss_pred CHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccc------eeEEecCCCHHHHHHHHHHH
Q 017844 143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRC------LNIRINSPTEEQIVKVLEFI 201 (365)
Q Consensus 143 ~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~------~~i~~~~~~~~~~~~iL~~~ 201 (365)
+...|-.+++++.+... +..+|++.++.. +--...++. .++....|..--..+.++.+
T Consensus 170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~V 235 (258)
T COG1120 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVLTEENLREV 235 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHH
Confidence 99999999999987652 355666666654 222233332 34555555443344444433
No 258
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.99 E-value=2.9e-10 Score=102.91 Aligned_cols=159 Identities=18% Similarity=0.329 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee-cCCCcceecccccccccccee---
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-DAGSRNIDLELTTLSSANHVE--- 96 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--- 96 (365)
+++.+...++.|.+ +.|.||+||||||+++.||+ |..++.|.+.+++..++. .|..+...+-|....-..|..
T Consensus 18 ~l~~i~l~i~~Gef--~vllGPSGcGKSTlLr~IAG-Le~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEF--VVLLGPSGCGKSTLLRMIAG-LEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 55555556667777 99999999999999999999 889999999999987632 333333332111111111110
Q ss_pred ---cCCCCcCccchhHHHHHHHHHHhc---------CCCCCCCC------------CCceEEEEeCC-CCCCHHHHHHHH
Q 017844 97 ---LSPSDAGFQDRYVVQEVIKEMAKN---------RPIDTKGK------------RGFKVLVLNEV-DKLSREAQHSLR 151 (365)
Q Consensus 97 ---~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~------------~~~~vliiDE~-~~L~~~~~~~Ll 151 (365)
+...-.+ ..+..+.+.+++.+.. .|..+|+. .+++++++||+ .+|+......+.
T Consensus 95 Niaf~Lk~~~-~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr 173 (338)
T COG3839 95 NIAFGLKLRG-VPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMR 173 (338)
T ss_pred HhhhhhhhCC-CchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHH
Confidence 1000000 1111222222332222 22233322 37889999998 678887776666
Q ss_pred HHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 152 ~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
..+.+... ...+|.+|++.... -++-+|..++
T Consensus 174 ~ei~~lh~~l~~T~IYVTHDq~EA-mtladri~Vm 207 (338)
T COG3839 174 SEIKKLHERLGTTTIYVTHDQVEA-MTLADRIVVM 207 (338)
T ss_pred HHHHHHHHhcCCcEEEEcCCHHHH-HhhCCEEEEE
Confidence 66655432 36678888776532 2455555433
No 259
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.99 E-value=5.8e-10 Score=93.73 Aligned_cols=139 Identities=17% Similarity=0.247 Sum_probs=78.1
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (365)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+. . .......+.+.+++......
T Consensus 22 ~i~~G~~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~-~-------~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 22 NIEAGEI--VALLGPSGSGKSTLLRCIAG-LEEPDSGSILIDGEDLTDLED-E-------LPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred EEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccch-h-------HHHHhhcEEEEecCCccCCC
Confidence 3444444 89999999999999999998 556777878777654311000 0 00001112222222221111
Q ss_pred hHHHHHHH---------HHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCc--eeEEEEecCCCcccH
Q 017844 108 YVVQEVIK---------EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTE 175 (365)
Q Consensus 108 ~~~~~~l~---------~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~--~~~Il~t~~~~~l~~ 175 (365)
.++.+.+. .+.-.. ....+++++++||+ ..|+...+..+.+.+.+.... ..+|+++++.+. .+
T Consensus 91 ~t~~~~l~~~lS~G~~qr~~la~----al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~ 165 (178)
T cd03229 91 LTVLENIALGLSGGQQQRVALAR----ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE-AA 165 (178)
T ss_pred CCHHHheeecCCHHHHHHHHHHH----HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH
Confidence 12222211 010000 11346789999998 789999999999999876543 566777766543 23
Q ss_pred HHhccce
Q 017844 176 AIRSRCL 182 (365)
Q Consensus 176 ~l~sR~~ 182 (365)
.+.+++.
T Consensus 166 ~~~d~i~ 172 (178)
T cd03229 166 RLADRVV 172 (178)
T ss_pred HhcCEEE
Confidence 3444443
No 260
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.99 E-value=2.8e-09 Score=102.24 Aligned_cols=168 Identities=20% Similarity=0.271 Sum_probs=100.3
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce---eccc
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI---DLEL 86 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~---~~~~ 86 (365)
.+|.+++|+..+++.+...+..+ .+++|+||+|+|||++++.+++ +..+..+...+++..+ .+..+... .+..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~g-llpp~~g~e~le~~~i-~s~~g~~~~~~~~~~ 263 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRING-LLPDLSNEEALESAAI-LSLVNAESVQKQWRQ 263 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhc-cCCCCCCcEEEecchh-hhhhccccccCCcCC
Confidence 37888899999888877666544 4599999999999999999998 4455555444444333 11111000 0000
Q ss_pred cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------
Q 017844 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY--------- 157 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~--------- 157 (365)
..+.++.|- .+...++..-....+ +.-......++++||++.++...++.|++.||+.
T Consensus 264 rPfr~ph~~------------~s~~~l~GGg~~~~p-G~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~ 330 (506)
T PRK09862 264 RPFRSPHHS------------ASLTAMVGGGAIPGP-GEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRA 330 (506)
T ss_pred CCccCCCcc------------chHHHHhCCCceehh-hHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCc
Confidence 111111110 000011100000000 0001234479999999999999999999999753
Q ss_pred ----cCceeEEEEecCCC---------------------cccHHHhccce-eEEecCCCHHHH
Q 017844 158 ----SASCRLILCCNSSS---------------------KVTEAIRSRCL-NIRINSPTEEQI 194 (365)
Q Consensus 158 ----~~~~~~Il~t~~~~---------------------~l~~~l~sR~~-~i~~~~~~~~~~ 194 (365)
+.++.+|.++|... ++..++.+|+. .+.+++++.+++
T Consensus 331 ~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l 393 (506)
T PRK09862 331 KITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGIL 393 (506)
T ss_pred ceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHH
Confidence 33466777777542 36678999996 688998887643
No 261
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.98 E-value=6.6e-10 Score=96.74 Aligned_cols=148 Identities=17% Similarity=0.212 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+ . .. ...+.+.++
T Consensus 17 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~--~--~~-------~~~i~~v~q 82 (220)
T cd03263 17 AVDDLSLNVYKGEI--FGLLGHNGAGKTTTLKMLTG-ELRPTSGTAYINGYSIRTDR--K--AA-------RQSLGYCPQ 82 (220)
T ss_pred eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccch--H--HH-------hhhEEEecC
Confidence 44444444555554 89999999999999999999 56777888877765431000 0 00 000111111
Q ss_pred CcCcc------------------ch----hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844 101 DAGFQ------------------DR----YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D 140 (365)
Q Consensus 101 ~~~~~------------------~~----~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~ 140 (365)
+.... .. ..+.+.++.+.- .....+| ...+++++++||+ .
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~ 162 (220)
T cd03263 83 FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTS 162 (220)
T ss_pred cCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 10000 00 011122211100 0000111 1347899999998 8
Q ss_pred CCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 141 ~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.|+......+.+.+.+...+..+|+++++.+. ...+.+|+..
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~-~~~~~d~i~~ 204 (220)
T cd03263 163 GLDPASRRAIWDLILEVRKGRSIILTTHSMDE-AEALCDRIAI 204 (220)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhcCEEEE
Confidence 89999999999999887656666777766553 3445555543
No 262
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=5.9e-10 Score=96.54 Aligned_cols=160 Identities=19% Similarity=0.291 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccccc------ccccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT------LSSAN 93 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~------~~~~~ 93 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+. .....+.... .+..+
T Consensus 15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 15 ALDDLSLTVEPGEF--LALLGPSGCGKTTLLRLIAG-LERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred eecceeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 34444444455555 89999999999999999998 557778888877754311000 0000000000 00000
Q ss_pred ceecCCCCcCccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844 94 HVELSPSDAGFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR 152 (365)
Q Consensus 94 ~~~~~~~~~~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~ 152 (365)
.+.+.....+... ...+.+.++.+.- ..+..+| ...+++++++||+ ..|+......+.+
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELRE 171 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0000000000000 0011222222110 0000111 1247899999998 7899999999999
Q ss_pred HHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 153 ~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+.+... +..+|++|++.+ ....+.+|+..+
T Consensus 172 ~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l 204 (213)
T cd03259 172 ELKELQRELGITTIYVTHDQE-EALALADRIAVM 204 (213)
T ss_pred HHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 9987642 456667776654 334455555433
No 263
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=1.8e-09 Score=94.86 Aligned_cols=152 Identities=17% Similarity=0.203 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..+...+....... ...+.+.++
T Consensus 20 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~-------~~~i~~~~q 89 (233)
T cd03258 20 ALKDVSLSVPKGEI--FGIIGRSGAGKSTLIRCING-LERPTSGSVLVDGTDLTLLSGKELRKA-------RRRIGMIFQ 89 (233)
T ss_pred eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcccCCHHHHHHH-------HhheEEEcc
Confidence 34444444455554 99999999999999999998 567778888887754311000000000 001111111
Q ss_pred CcCccchh----------------------HHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844 101 DAGFQDRY----------------------VVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D 140 (365)
Q Consensus 101 ~~~~~~~~----------------------~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~ 140 (365)
+....... .+.+.++.+.- ..+..+| ...+++++++||+ .
T Consensus 90 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 169 (233)
T cd03258 90 HFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATS 169 (233)
T ss_pred CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 11110000 11111211110 0000111 1247789999998 7
Q ss_pred CCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 141 ~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.|+......+.+.+.+... +..+|+++++.+ ....+.+|+.+
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~ 213 (233)
T cd03258 170 ALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAV 213 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 8999999999999987643 456777776654 33445566543
No 264
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.98 E-value=1.8e-09 Score=93.62 Aligned_cols=152 Identities=14% Similarity=0.231 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..+...+....... ...+.+.++
T Consensus 17 il~~is~~i~~G~~--~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~-------~~~i~~~~q 86 (214)
T TIGR02673 17 ALHDVSLHIRKGEF--LFLTGPSGAGKTTLLKLLYG-ALTPSRGQVRIAGEDVNRLRGRQLPLL-------RRRIGVVFQ 86 (214)
T ss_pred eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcccCCHHHHHHH-------HhheEEEec
Confidence 44445445555655 89999999999999999998 456777878777654310000000000 000111111
Q ss_pred CcCcc------------------ch----hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844 101 DAGFQ------------------DR----YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D 140 (365)
Q Consensus 101 ~~~~~------------------~~----~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~ 140 (365)
+.... .. ..+.+.++.+.- ..+..+| ...+++++++||+ .
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~ 166 (214)
T TIGR02673 87 DFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTG 166 (214)
T ss_pred ChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 11000 00 011122222110 0000111 1247899999998 7
Q ss_pred CCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 141 ~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.|+......+.+.+.+... +..+|++|++.+. ...+.+|+.+
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~ 209 (214)
T TIGR02673 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSL-VDRVAHRVII 209 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEE
Confidence 8999999999999987643 4567777766543 3344455443
No 265
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.98 E-value=4.7e-10 Score=102.42 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++......+. . . ...+.+.++
T Consensus 19 ~l~~vsl~i~~Ge~--~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~-~---~-------~~~i~~v~q 84 (303)
T TIGR01288 19 VVNDLSFTIARGEC--FGLLGPNGAGKSTIARMLLG-MISPDRGKITVLGEPVPSRAR-L---A-------RVAIGVVPQ 84 (303)
T ss_pred EEcceeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECcccHH-H---H-------hhcEEEEec
Confidence 44555445555655 99999999999999999999 557777888877654310000 0 0 000111111
Q ss_pred CcCcc------------------chh----HHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844 101 DAGFQ------------------DRY----VVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D 140 (365)
Q Consensus 101 ~~~~~------------------~~~----~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~ 140 (365)
+.... ... .+.+.++.+.- .....+| ...+++++++||+ .
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 11100 000 01111111100 0000111 1247899999998 8
Q ss_pred CCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 141 ~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.|++.....+.+.+.+... +..+|++|++.+ ....+.+|+..
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~ 207 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCV 207 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 8999999999999987643 445666666554 44455666643
No 266
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=2.6e-09 Score=91.67 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC---CCCccceeccccceecCCCcceeccccccccccceecC
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG---PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (365)
++.+.-.+..|.. +.|.||+|+||||+++.+++. .. +..+.+.+++......+ . .....+.+.
T Consensus 23 l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~-~~~~~~~~G~i~i~g~~~~~~~-~----------~~~~~i~~~ 88 (202)
T cd03233 23 LKDFSGVVKPGEM--VLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYKEFA-E----------KYPGEIIYV 88 (202)
T ss_pred eeeEEEEECCCcE--EEEECCCCCCHHHHHHHhccc-CCCCCCcceEEEECCEECccch-h----------hhcceEEEE
Confidence 3333334444544 899999999999999999994 44 56777777765430000 0 001112333
Q ss_pred CCCcCccchhHHHHHHHHHHh----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--
Q 017844 99 PSDAGFQDRYVVQEVIKEMAK----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-- 159 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-- 159 (365)
+++.......++.+.+..... .....++ ...+++++++||+ ..|+...+..+.+.+.+...
T Consensus 89 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 168 (202)
T cd03233 89 SEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL 168 (202)
T ss_pred ecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 333222222234444432211 1111111 1236789999998 88999999999999988643
Q ss_pred ceeEEEEecCCCcccHHHhcccee
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+..+|+++++.......+.+++..
T Consensus 169 ~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 169 KTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred CCEEEEEEcCCHHHHHHhCCeEEE
Confidence 345666666654333445555433
No 267
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.98 E-value=1.9e-09 Score=93.67 Aligned_cols=148 Identities=18% Similarity=0.234 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+. .. ...+.+.++
T Consensus 20 il~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~----~~-------~~~i~~~~q 85 (218)
T cd03266 20 AVDGVSFTVKPGEV--TGLLGPNGAGKTTTLRMLAG-LLEPDAGFATVDGFDVVKEPA----EA-------RRRLGFVSD 85 (218)
T ss_pred eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CcCCCCceEEECCEEcccCHH----HH-------HhhEEEecC
Confidence 34444444444544 89999999999999999999 567777888877754411000 00 001111111
Q ss_pred CcCccch----------------------hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844 101 DAGFQDR----------------------YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D 140 (365)
Q Consensus 101 ~~~~~~~----------------------~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~ 140 (365)
+...... ..+.+.++.+.- .....+| ...+++++++||+ .
T Consensus 86 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 165 (218)
T cd03266 86 STGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTT 165 (218)
T ss_pred CcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1111000 011112221100 0000111 1247899999998 8
Q ss_pred CCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 141 ~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.|+......+.+.|.+... +..+|++|++.+. ...+.+|+..
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~ 208 (218)
T cd03266 166 GLDVMATRALREFIRQLRALGKCILFSTHIMQE-VERLCDRVVV 208 (218)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhcCEEEE
Confidence 8999999999999988643 4567777776553 3344455433
No 268
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.97 E-value=2.6e-09 Score=92.20 Aligned_cols=141 Identities=18% Similarity=0.285 Sum_probs=78.2
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCcc--
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ-- 105 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 105 (365)
.+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++.... .. .. . ...+.+.+++....
T Consensus 22 ~i~~G~~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~-~~-~~---~-------~~~i~~~~q~~~~~~~ 86 (208)
T cd03268 22 HVKKGEI--YGFLGPNGAGKTTTMKIILG-LIKPDSGEITFDGKSYQ-KN-IE---A-------LRRIGALIEAPGFYPN 86 (208)
T ss_pred EEcCCcE--EEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCCccc-ch-HH---H-------HhhEEEecCCCccCcc
Confidence 3344444 89999999999999999998 55677788877765431 00 00 0 00011111111100
Q ss_pred ----------------chhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHH
Q 017844 106 ----------------DRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLR 151 (365)
Q Consensus 106 ----------------~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll 151 (365)
....+.+.++.+. ......+| ...+++++++||+ ..|+......+.
T Consensus 87 ~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 166 (208)
T cd03268 87 LTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR 166 (208)
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence 0111222222210 00000111 1347789999998 789999999999
Q ss_pred HHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 152 RTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 152 ~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
+.+.+... +..+|++|++.+ ....+.+|+..+
T Consensus 167 ~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l 199 (208)
T cd03268 167 ELILSLRDQGITVLISSHLLS-EIQKVADRIGII 199 (208)
T ss_pred HHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEE
Confidence 99987643 455666666544 334455555433
No 269
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.97 E-value=1.6e-09 Score=83.59 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=34.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhhhcC----------ceeEEEEecCC-C-----cccHHHhccce
Q 017844 132 KVLVLNEVDKLSREAQHSLRRTMEKYSA----------SCRLILCCNSS-S-----KVTEAIRSRCL 182 (365)
Q Consensus 132 ~vliiDE~~~L~~~~~~~Ll~~le~~~~----------~~~~Il~t~~~-~-----~l~~~l~sR~~ 182 (365)
.|+++||+++..+..|.+|++.|+|..- ...+|++|.++ + .++++.++|+.
T Consensus 64 ~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 64 NILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 5999999999999999999999987421 11244544444 3 48888888874
No 270
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=2.2e-09 Score=91.38 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=80.0
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc-CCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccc
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD 106 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (365)
.+..|.. +.|.||+|+||||+++.+++... .+..+.+.+++... . . .....+.+.++......
T Consensus 29 ~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~-~----~---------~~~~~i~~~~q~~~~~~ 92 (192)
T cd03232 29 YVKPGTL--TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL-D----K---------NFQRSTGYVEQQDVHSP 92 (192)
T ss_pred EEeCCcE--EEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh-H----H---------HhhhceEEecccCcccc
Confidence 3344444 89999999999999999998432 35667777666433 0 0 00111233333322222
Q ss_pred hhHHHHHHHHHHhcCCC----------CCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCccc
Q 017844 107 RYVVQEVIKEMAKNRPI----------DTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVT 174 (365)
Q Consensus 107 ~~~~~~~l~~~~~~~~~----------~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~ 174 (365)
..++.+.+........+ ......+++++++||+ ..|+......+.+.+.+... +..+|++|++.+...
T Consensus 93 ~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~ 172 (192)
T cd03232 93 NLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASI 172 (192)
T ss_pred CCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHH
Confidence 22344443321110011 0012346799999998 78999999999999987643 466777777765222
Q ss_pred HHHhccce
Q 017844 175 EAIRSRCL 182 (365)
Q Consensus 175 ~~l~sR~~ 182 (365)
..+.+|+.
T Consensus 173 ~~~~d~i~ 180 (192)
T cd03232 173 FEKFDRLL 180 (192)
T ss_pred HhhCCEEE
Confidence 33344443
No 271
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.97 E-value=4.8e-09 Score=84.23 Aligned_cols=125 Identities=22% Similarity=0.336 Sum_probs=74.5
Q ss_pred ccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccc
Q 017844 16 IVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN 93 (365)
Q Consensus 16 ig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (365)
+|.....+.++..++. ....+++|+|++|+||+++|+.+...- .......
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~-~~~~~~~--------------------------- 52 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS-GRANGPF--------------------------- 52 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT-TTCCS-C---------------------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc-CccCCCe---------------------------
Confidence 4555566666655543 222349999999999999999987732 1111100
Q ss_pred ceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-cCceeEEEEecCCC-
Q 017844 94 HVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-SASCRLILCCNSSS- 171 (365)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-~~~~~~Il~t~~~~- 171 (365)
+...+.... .+.+... ....++|+|++.|+.+.|..|+..++.. ..++++|++++...
T Consensus 53 -~~~~~~~~~-------~~~l~~a------------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~ 112 (138)
T PF14532_consen 53 -IVIDCASLP-------AELLEQA------------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLE 112 (138)
T ss_dssp -CCCCHHCTC-------HHHHHHC------------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CC
T ss_pred -EEechhhCc-------HHHHHHc------------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHH
Confidence 000000000 1222221 2258999999999999999999999864 56789999888654
Q ss_pred ------cccHHHhccce--eEEecC
Q 017844 172 ------KVTEAIRSRCL--NIRINS 188 (365)
Q Consensus 172 ------~l~~~l~sR~~--~i~~~~ 188 (365)
.+.+.+..|+. .+.+++
T Consensus 113 ~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 113 ELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp CHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred HHhhccchhHHHHHHhCCCEEeCCC
Confidence 25566666653 555554
No 272
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=1.5e-09 Score=90.54 Aligned_cols=134 Identities=20% Similarity=0.317 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (365)
++.+.-.+..|.. +.+.||+|+||||+++++++ +..+..+.+.+++......+.. .....+.+..++
T Consensus 18 l~~i~~~i~~G~~--~~l~G~nGsGKstLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~----------~~~~~i~~~~~~ 84 (171)
T cd03228 18 LKDVSLTIKPGEK--VAIVGPSGSGKSTLLKLLLR-LYDPTSGEILIDGVDLRDLDLE----------SLRKNIAYVPQD 84 (171)
T ss_pred ccceEEEEcCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCCCEEEECCEEhhhcCHH----------HHHhhEEEEcCC
Confidence 3333333444544 99999999999999999999 5567777777776433100000 000112222222
Q ss_pred cCccchhHHHHHH------HHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844 102 AGFQDRYVVQEVI------KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (365)
Q Consensus 102 ~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l 173 (365)
..... .++.+.+ +.++-... ...+++++++||+ ..|+......+.+.+.+...+..+|+++++.+.+
T Consensus 85 ~~~~~-~t~~e~lLS~G~~~rl~la~a----l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 85 PFLFS-GTIRENILSGGQRQRIAIARA----LLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred chhcc-chHHHHhhCHHHHHHHHHHHH----HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 21111 1222221 11111011 1346789999998 7899999999999998775556677777776543
No 273
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.96 E-value=2.2e-09 Score=97.88 Aligned_cols=142 Identities=20% Similarity=0.264 Sum_probs=81.9
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (365)
.+..|.. +.|.||+|+||||+++++++ +..++.|.+.+++......+ .. . ...+.+.++.......
T Consensus 24 ~i~~Gei--~~l~G~NGaGKTTLl~~l~G-l~~~~~G~i~i~g~~~~~~~-~~---~-------~~~ig~~~q~~~l~~~ 89 (301)
T TIGR03522 24 EAQKGRI--VGFLGPNGAGKSTTMKIITG-YLPPDSGSVQVCGEDVLQNP-KE---V-------QRNIGYLPEHNPLYLD 89 (301)
T ss_pred EEeCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccCh-HH---H-------HhceEEecCCCCCCCC
Confidence 3444544 89999999999999999998 66788888888775431100 00 0 0112222222111111
Q ss_pred hHH----------------------HHHHHHHHhc----CCC-CCC------------CCCCceEEEEeCC-CCCCHHHH
Q 017844 108 YVV----------------------QEVIKEMAKN----RPI-DTK------------GKRGFKVLVLNEV-DKLSREAQ 147 (365)
Q Consensus 108 ~~~----------------------~~~l~~~~~~----~~~-~~~------------~~~~~~vliiDE~-~~L~~~~~ 147 (365)
.++ .+.++.+.-. ... .+| ...+++++++||+ ..|++...
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~ 169 (301)
T TIGR03522 90 MYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL 169 (301)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 111 1122111000 000 111 1247899999998 88999999
Q ss_pred HHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 148 ~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
..+.+.+.+......+|++|++.+ ....+.+|+.++
T Consensus 170 ~~l~~~l~~~~~~~tiii~sH~l~-~~~~~~d~i~~l 205 (301)
T TIGR03522 170 VEIRNVIKNIGKDKTIILSTHIMQ-EVEAICDRVIII 205 (301)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCHH-HHHHhCCEEEEE
Confidence 999999988765555555655544 445566776443
No 274
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.95 E-value=3.7e-09 Score=88.40 Aligned_cols=136 Identities=22% Similarity=0.334 Sum_probs=78.7
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (365)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+. . .....+.+..++......
T Consensus 24 ~i~~Ge~--~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~~~--------~--~~~~~i~~~~q~~~~~~~ 90 (173)
T cd03246 24 SIEPGES--LAIIGPSGSGKSTLARLILG-LLRPTSGRVRLDGADISQWDP--------N--ELGDHVGYLPQDDELFSG 90 (173)
T ss_pred EECCCCE--EEEECCCCCCHHHHHHHHHh-ccCCCCCeEEECCEEcccCCH--------H--HHHhheEEECCCCccccC
Confidence 3344444 89999999999999999999 556777877777654310000 0 000112222222221111
Q ss_pred hHHHHHH------HHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhc
Q 017844 108 YVVQEVI------KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRS 179 (365)
Q Consensus 108 ~~~~~~l------~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~s 179 (365)
++.+.+ +.++-... ...+++++++||+ ..|+......+.+.+.+... +..+|+++++.+.+ . ..+
T Consensus 91 -tv~~~lLS~G~~qrv~la~a----l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~-~~d 163 (173)
T cd03246 91 -SIAENILSGGQRQRLGLARA----LYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-A-SAD 163 (173)
T ss_pred -cHHHHCcCHHHHHHHHHHHH----HhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-H-hCC
Confidence 222221 11111111 1346789999998 78999999999999987643 45677777776532 2 344
Q ss_pred ccee
Q 017844 180 RCLN 183 (365)
Q Consensus 180 R~~~ 183 (365)
|+..
T Consensus 164 ~v~~ 167 (173)
T cd03246 164 RILV 167 (173)
T ss_pred EEEE
Confidence 4433
No 275
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=7.8e-10 Score=99.23 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=39.4
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|+.+
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~-~~~~~d~v~~ 233 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE-ALRLGDRIAI 233 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEE
Confidence 47899999998 88999999999999987642 4567777776553 3445555543
No 276
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.95 E-value=6.3e-10 Score=95.78 Aligned_cols=158 Identities=15% Similarity=0.204 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc-------ccccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT-------LSSAN 93 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 93 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..+..........+.... .+..+
T Consensus 15 ~l~~v~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 15 ILDDLSLDLYAGEI--IALTGKNGAGKTTLAKILAG-LIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 34444444455555 99999999999999999999 5677788887776543000000000000000 00000
Q ss_pred ceecCCCCcCccchhHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHh
Q 017844 94 HVELSPSDAGFQDRYVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (365)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le 155 (365)
.+.+.....+ .....+.+.++.+.-. .+..+| ...+++++++||+ ..|++.....+.+.+.
T Consensus 92 ~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 170 (205)
T cd03226 92 ELLLGLKELD-AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170 (205)
T ss_pred HHhhhhhhcC-ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0000000000 0111223333322110 111111 1237899999998 8899999999999998
Q ss_pred hhc-CceeEEEEecCCCcccHHHhcccee
Q 017844 156 KYS-ASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 156 ~~~-~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+.. .+..+|++|++.+. ...+.+|+..
T Consensus 171 ~~~~~~~tii~~sH~~~~-~~~~~d~i~~ 198 (205)
T cd03226 171 ELAAQGKAVIVITHDYEF-LAKVCDRVLL 198 (205)
T ss_pred HHHHCCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 763 34567777766553 3344455443
No 277
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=6.9e-10 Score=96.62 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.+..|.. +.|.||+|+|||||++++++ +..+..+.+.+++......+ . .. ...+.+.++
T Consensus 15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~--~--~~-------~~~i~~~~q 80 (220)
T cd03265 15 AVRGVSFRVRRGEI--FGLLGPNGAGKTTTIKMLTT-LLKPTSGRATVAGHDVVREP--R--EV-------RRRIGIVFQ 80 (220)
T ss_pred eeeceeEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecCcCh--H--HH-------hhcEEEecC
Confidence 34444444444544 89999999999999999999 55777787777764431000 0 00 000111111
Q ss_pred Cc-------------------Cccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844 101 DA-------------------GFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D 140 (365)
Q Consensus 101 ~~-------------------~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~ 140 (365)
+. +... ...+.+.++.+.- ..+..+| ...+++++++||+ .
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 10 0000 0011222222110 0011111 1247899999998 8
Q ss_pred CCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 141 ~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.|+......+.+.+.+... +..+|++|++.+. ...+.+|+.
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~-~~~~~d~i~ 203 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE-AEQLCDRVA 203 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEE
Confidence 8999999999999987643 4567777776553 344556654
No 278
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=2.5e-09 Score=93.09 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc------cccccce
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSANHV 95 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 95 (365)
++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++... ... .....+.... .+..+.+
T Consensus 20 l~~vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~-~~~-~~~i~~v~q~~~~~~~~tv~e~l 94 (220)
T cd03293 20 LEDISLSVEEGEF--VALVGPSGCGKSTLLRIIAG-LERPTSGEVLVDGEPV-TGP-GPDRGYVFQQDALLPWLTVLDNV 94 (220)
T ss_pred EeceeEEEeCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEC-ccc-cCcEEEEecccccccCCCHHHHH
Confidence 3344344445544 89999999999999999998 5567778887776543 100 0000000000 0000000
Q ss_pred ecCCCCcCccc---hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHH
Q 017844 96 ELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTM 154 (365)
Q Consensus 96 ~~~~~~~~~~~---~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~l 154 (365)
.+.....+... ...+.+.++.+. ...+..+| ...+++++++||+ ..|+......+.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l 174 (220)
T cd03293 95 ALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174 (220)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 00000000000 001122222211 00111111 1237799999998 889999999999999
Q ss_pred hhhc--CceeEEEEecCCCcccHHHhccceeE
Q 017844 155 EKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 155 e~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+.. .+..+|+++++.+.+ ..+.+|+..+
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~-~~~~d~i~~l 205 (220)
T cd03293 175 LDIWRETGKTVLLVTHDIDEA-VFLADRVVVL 205 (220)
T ss_pred HHHHHHcCCEEEEEecCHHHH-HHhCCEEEEE
Confidence 8763 245677777766532 3444554433
No 279
>PRK06526 transposase; Provisional
Probab=98.95 E-value=5e-09 Score=92.58 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=42.7
Q ss_pred CceEEEEeCCCCC--CHHHHHHHHHHHhhhcCceeEEEEecCCCc----------ccHHHhcc----ceeEEecCCCHH
Q 017844 130 GFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSSSK----------VTEAIRSR----CLNIRINSPTEE 192 (365)
Q Consensus 130 ~~~vliiDE~~~L--~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~----------l~~~l~sR----~~~i~~~~~~~~ 192 (365)
++.++||||++.+ +...++.|+.+++....+..+|++||.+.. +-.++.+| |.++.|...+..
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R 237 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYR 237 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcc
Confidence 4589999999876 467777888888765445668888887642 12234454 457777766544
No 280
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.95 E-value=6.4e-09 Score=86.01 Aligned_cols=131 Identities=18% Similarity=0.270 Sum_probs=75.9
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (365)
.+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++......+.. +. ....+.+.++ ...
T Consensus 22 ~i~~Ge~--~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~---~~------~~~~i~~~~q---LS~- 85 (163)
T cd03216 22 SVRRGEV--HALLGENGAGKSTLMKILSG-LYKPDSGEILVDGKEVSFASPR---DA------RRAGIAMVYQ---LSV- 85 (163)
T ss_pred EEeCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEECCcCCHH---HH------HhcCeEEEEe---cCH-
Confidence 3444544 89999999999999999998 5567777777776443000000 00 0011222221 111
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 108 YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
... +.+. ++. . ...+++++++||+ ..|+......+.+.+.+... +..+|+++++.+. .+.+.+|+..
T Consensus 86 G~~-qrl~-lar--a----l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~~~~~d~~~~ 154 (163)
T cd03216 86 GER-QMVE-IAR--A----LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE-VFEIADRVTV 154 (163)
T ss_pred HHH-HHHH-HHH--H----HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 111 1111 111 1 1245689999998 78999999999999987643 4566666666543 3344455543
No 281
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=3.1e-09 Score=93.47 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=40.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|+.++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~-~~~~~d~v~~l 210 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVL 210 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhcCEEEEE
Confidence 47899999998 78999999999999987643 4567777776553 34455565433
No 282
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.94 E-value=2.9e-09 Score=89.50 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=78.6
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (365)
.+..|.. +.+.||+|+||||+++++++ +..+..+.+.+++... ... .. . ....+.+.+++.....
T Consensus 24 ~i~~Ge~--~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~-~~~-~~--~-------~~~~i~~~~q~~~~~~- 88 (178)
T cd03247 24 ELKQGEK--IALLGRSGSGKSTLLQLLTG-DLKPQQGEITLDGVPV-SDL-EK--A-------LSSLISVLNQRPYLFD- 88 (178)
T ss_pred EEcCCCE--EEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCEEH-HHH-HH--H-------HHhhEEEEccCCeeec-
Confidence 3444544 89999999999999999999 5567777777776433 000 00 0 0011122222211111
Q ss_pred hHHHHHH---------HHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHH
Q 017844 108 YVVQEVI---------KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177 (365)
Q Consensus 108 ~~~~~~l---------~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l 177 (365)
.++.+.+ +.+.-.. ....+++++++||+ ..|+......+.+.+.+...+..+|+++++.+.+ + .
T Consensus 89 ~tv~~~i~~~LS~G~~qrv~lar----al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~-~ 162 (178)
T cd03247 89 TTLRNNLGRRFSGGERQRLALAR----ILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI-E-H 162 (178)
T ss_pred ccHHHhhcccCCHHHHHHHHHHH----HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-H-h
Confidence 1122211 0000000 11346799999998 7899999999999998775566778888776644 3 3
Q ss_pred hcccee
Q 017844 178 RSRCLN 183 (365)
Q Consensus 178 ~sR~~~ 183 (365)
.+|+..
T Consensus 163 ~d~~~~ 168 (178)
T cd03247 163 MDKILF 168 (178)
T ss_pred CCEEEE
Confidence 455433
No 283
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.2e-09 Score=103.66 Aligned_cols=131 Identities=21% Similarity=0.392 Sum_probs=89.7
Q ss_pred ccccCHHHHHHHHHHHHcC-----C--CCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecc
Q 017844 14 QVIVHQDIAQNLKKLVTEQ-----D--CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (365)
Q Consensus 14 ~iig~~~~~~~l~~~l~~~-----~--~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (365)
.++||+++++.+..++... + ... ++|.||.|+|||-+|+++|..+++.....+.++...|+. +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e--------v- 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE--------V- 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh--------h-
Confidence 5789999999999998642 2 222 999999999999999999999988887777777765510 1
Q ss_pred ccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-------
Q 017844 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------- 158 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~------- 158 (365)
.....+..++.......++.+.+ . ...+.||++||++.-.+..++.|++++++..
T Consensus 634 ---------skligsp~gyvG~e~gg~Lteav-r--------rrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr 695 (898)
T KOG1051|consen 634 ---------SKLIGSPPGYVGKEEGGQLTEAV-K--------RRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGR 695 (898)
T ss_pred ---------hhccCCCcccccchhHHHHHHHH-h--------cCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCc
Confidence 01111111111111122222222 2 2345899999999999999999999998642
Q ss_pred ----CceeEEEEecCCC
Q 017844 159 ----ASCRLILCCNSSS 171 (365)
Q Consensus 159 ----~~~~~Il~t~~~~ 171 (365)
.++.||+|+|...
T Consensus 696 ~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 696 EVDFKNAIFIMTSNVGS 712 (898)
T ss_pred EeeccceEEEEecccch
Confidence 4567888877654
No 284
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.94 E-value=2.8e-09 Score=92.42 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=38.4
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|++.....+.+.+.+.. ....+|++|++.+. ...+.+|+..
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~-~~~~~d~i~~ 208 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL-VDTTRHRVIA 208 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 47899999998 7899999999999998764 34567777766543 2334444433
No 285
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.94 E-value=3.7e-09 Score=91.09 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccc------cccccccc
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLEL------TTLSSANH 94 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~ 94 (365)
++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++... ..+. ........ ...+..+.
T Consensus 18 l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 18 FSGLSFTLAAGEA--LVLTGPNGSGKTTLLRLIAG-LLPPAAGTIKLDGGDI-DDPDVAEACHYLGHRNAMKPALTVAEN 93 (207)
T ss_pred EeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEeC-cchhhHhhcEEecCCCcCCCCCcHHHH
Confidence 3333334445554 89999999999999999999 5567777777776432 1100 00000000 00000000
Q ss_pred eecCCCCcCccchhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhh
Q 017844 95 VELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (365)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~ 156 (365)
+.+.....+ .....+.+.++.+.- .....+| ...+++++++||+ ..|+......+.+.|.+
T Consensus 94 l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 172 (207)
T PRK13539 94 LEFWAAFLG-GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA 172 (207)
T ss_pred HHHHHHhcC-CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 000000000 001112222222210 0000111 1246799999998 78999999999999987
Q ss_pred h-cCceeEEEEecCCCcccHHHhccceeEEecCCCH
Q 017844 157 Y-SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTE 191 (365)
Q Consensus 157 ~-~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~ 191 (365)
. .....+|++|++.+.+.. . .++.+.+|+.
T Consensus 173 ~~~~~~tiii~sH~~~~~~~---~--~~~~~~~~~~ 203 (207)
T PRK13539 173 HLAQGGIVIAATHIPLGLPG---A--RELDLGPFAA 203 (207)
T ss_pred HHHCCCEEEEEeCCchhhcc---C--cEEeecCccC
Confidence 5 334667788877765543 3 3455555443
No 286
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.2e-08 Score=87.06 Aligned_cols=192 Identities=20% Similarity=0.309 Sum_probs=112.7
Q ss_pred cccCHHHHHHHHHHHH-----------cC----CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 15 VIVHQDIAQNLKKLVT-----------EQ----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 15 iig~~~~~~~l~~~l~-----------~~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
++||+.+++.|.-++- .. ...|+++.||.|+|||.||+.+|+.|.-|.. +
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFa----i----------- 127 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFA----I----------- 127 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCee----e-----------
Confidence 4788888765543321 11 1235999999999999999999997743210 0
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--------------HH
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------------RE 145 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--------------~~ 145 (365)
.+. + .+. +.| +-...++.++..+.+....+.. ...+.|++|||+|.+. ..
T Consensus 128 --ADA--T--------tLT--EAG-YVGEDVENillkLlqaadydV~-rAerGIIyIDEIDKIarkSeN~SITRDVSGEG 191 (408)
T COG1219 128 --ADA--T--------TLT--EAG-YVGEDVENILLKLLQAADYDVE-RAERGIIYIDEIDKIARKSENPSITRDVSGEG 191 (408)
T ss_pred --ccc--c--------chh--hcc-ccchhHHHHHHHHHHHcccCHH-HHhCCeEEEechhhhhccCCCCCcccccCchH
Confidence 000 0 011 111 2222455666665554433221 2345799999999873 35
Q ss_pred HHHHHHHHHhhh-----cCc--------------eeEEEEecCCC-----------------------------------
Q 017844 146 AQHSLRRTMEKY-----SAS--------------CRLILCCNSSS----------------------------------- 171 (365)
Q Consensus 146 ~~~~Ll~~le~~-----~~~--------------~~~Il~t~~~~----------------------------------- 171 (365)
.|.+||+++|.. |.. ..+.|+|...-
T Consensus 192 VQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l 271 (408)
T COG1219 192 VQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELL 271 (408)
T ss_pred HHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHH
Confidence 789999999841 211 11333322110
Q ss_pred -----------cccHHHhccce-eEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc---CC
Q 017844 172 -----------KVTEAIRSRCL-NIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS---NR 223 (365)
Q Consensus 172 -----------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~~~~i~~~~---~g 223 (365)
.+.|.+.-|+- +..+.+++.+++..+|.. .+..+++ .++++++..||+.+ ..
T Consensus 272 ~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkT 351 (408)
T COG1219 272 KQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKT 351 (408)
T ss_pred HhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhcc
Confidence 14455666664 567899999999888753 1222444 57899999999853 34
Q ss_pred CHHHHHHHHHHHHh
Q 017844 224 SLRRAILSFETCRV 237 (365)
Q Consensus 224 ~lr~ai~~l~~~~~ 237 (365)
..|-+.+.++.+.+
T Consensus 352 GARGLRsI~E~~ll 365 (408)
T COG1219 352 GARGLRSIIEELLL 365 (408)
T ss_pred chhHHHHHHHHHHH
Confidence 55555566665443
No 287
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.94 E-value=1.3e-09 Score=95.68 Aligned_cols=157 Identities=13% Similarity=0.186 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc--ceeccccccccc------
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLELTTLSSA------ 92 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~------ 92 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+... ...+ ......
T Consensus 15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i--~~~~q~~~~~~~ 89 (230)
T TIGR03410 15 ILRGVSLEVPKGEV--TCVLGRNGVGKTTLLKTLMG-LLPVKSGSIRLDGEDITKLPPHERARAGI--AYVPQGREIFPR 89 (230)
T ss_pred EecceeeEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCCHHHHHHhCe--EEeccCCcccCC
Confidence 34444444555555 99999999999999999999 55777787777764431000000 0000 000000
Q ss_pred ----cceecCCCCcCccchhHHHHHHHHHH------hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844 93 ----NHVELSPSDAGFQDRYVVQEVIKEMA------KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS 149 (365)
Q Consensus 93 ----~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~ 149 (365)
+.+.+.....+........+.++.+. ......+| ...+++++++||+ ..|+......
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~ 169 (230)
T TIGR03410 90 LTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD 169 (230)
T ss_pred CcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 00000000000000011122222211 11111111 1247799999998 8899999999
Q ss_pred HHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+.+.+.+... +..+|++|++.+ ....+.+|+.+
T Consensus 170 l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~ 204 (230)
T TIGR03410 170 IGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYV 204 (230)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999987643 456777777655 33445566543
No 288
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.93 E-value=7.8e-09 Score=86.26 Aligned_cols=119 Identities=17% Similarity=0.201 Sum_probs=72.4
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhH
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV 109 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (365)
..|.. +.|.||+|+||||+++++++ +..++.+.+.+++..+ .+.++....... .
T Consensus 23 ~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i----------------------~~~~q~~~LSgG-q 76 (177)
T cd03222 23 KEGEV--IGIVGPNGTGKTTAVKILAG-QLIPNGDNDEWDGITP----------------------VYKPQYIDLSGG-E 76 (177)
T ss_pred CCCCE--EEEECCCCChHHHHHHHHHc-CCCCCCcEEEECCEEE----------------------EEEcccCCCCHH-H
Confidence 34444 89999999999999999998 5577777777665332 111111111111 1
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-c-eeEEEEecCCCcccHHHhcccee
Q 017844 110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-S-CRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~-~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
++.+. ++.. ...+++++++||+ ..|+......+.+.+.+... . ..+|+++++.. ....+.+|+..
T Consensus 77 -~qrv~-lara------l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 144 (177)
T cd03222 77 -LQRVA-IAAA------LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHV 144 (177)
T ss_pred -HHHHH-HHHH------HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEE
Confidence 11111 1111 1235689999998 78999999988888877533 2 55666666654 33444555543
No 289
>PRK10908 cell division protein FtsE; Provisional
Probab=98.93 E-value=3.6e-09 Score=92.22 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=38.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|+..+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l 210 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL-ISRRSYRMLTL 210 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 47789999998 88999999999999887643 4566667766543 33444554433
No 290
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.93 E-value=2.1e-09 Score=92.04 Aligned_cols=150 Identities=11% Similarity=0.097 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh-cCCCCccceeccccceecCCCcceeccccccccccceecCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (365)
+.+.+.-.+..|.. +.|.||+|+||||+++++++.. ..+..+.+.+++.......... .....+.+.+
T Consensus 15 ~l~~is~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~---------~~~~~i~~v~ 83 (200)
T cd03217 15 ILKGVNLTIKKGEV--HALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE---------RARLGIFLAF 83 (200)
T ss_pred eeeccceEECCCcE--EEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHH---------HhhCcEEEee
Confidence 34444444444544 9999999999999999999954 3577788888775431000000 0001122333
Q ss_pred CCcCccchhHHHHHHHHHHhcCC--------CCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecC
Q 017844 100 SDAGFQDRYVVQEVIKEMAKNRP--------IDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNS 169 (365)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~ 169 (365)
++........+.+.++.....-+ +......+++++++||+ ..|+......+.+.+.+... ...+|++|++
T Consensus 84 q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~ 163 (200)
T cd03217 84 QYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163 (200)
T ss_pred cChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 32222222223333321100000 00011346799999998 78999999999999887643 4567777776
Q ss_pred CCcccHH-Hhccce
Q 017844 170 SSKVTEA-IRSRCL 182 (365)
Q Consensus 170 ~~~l~~~-l~sR~~ 182 (365)
.+ .... +.+|+.
T Consensus 164 ~~-~~~~~~~d~i~ 176 (200)
T cd03217 164 QR-LLDYIKPDRVH 176 (200)
T ss_pred HH-HHHHhhCCEEE
Confidence 55 3343 456654
No 291
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.93 E-value=3.9e-09 Score=92.04 Aligned_cols=158 Identities=14% Similarity=0.186 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC----Ccceeccccc------ccc
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLELTT------LSS 91 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~------~~~ 91 (365)
++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+. .....+.... .+.
T Consensus 16 l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 16 LFGVSLTVPEGEI--VALLGRNGAGKTTLLKTIMG-LLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred eeeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 3333334444544 99999999999999999998 557777888777654311000 0000000000 000
Q ss_pred ccceecCCCCcC-ccchhHHHHHHHHHH------hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHH
Q 017844 92 ANHVELSPSDAG-FQDRYVVQEVIKEMA------KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLR 151 (365)
Q Consensus 92 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~------~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll 151 (365)
.+.+.+.....+ ......+.+.++.+. ......+| ...+++++++||+ ..|+......+.
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 172 (222)
T cd03224 93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172 (222)
T ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence 000000000000 000111222232221 00010111 1247899999998 789999999999
Q ss_pred HHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 152 RTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 152 ~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+.+.+... +..+|+++++.+ ....+.+|+..
T Consensus 173 ~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 204 (222)
T cd03224 173 EAIRELRDEGVTILLVEQNAR-FALEIADRAYV 204 (222)
T ss_pred HHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEE
Confidence 99987643 456666666544 33444555533
No 292
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.93 E-value=5.5e-09 Score=91.96 Aligned_cols=155 Identities=14% Similarity=0.222 Sum_probs=82.2
Q ss_pred HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccc---------
Q 017844 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN--------- 93 (365)
Q Consensus 23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 93 (365)
+.+.-.+..|.. +.|.||+|+|||||++++++ +..+..|.+.+++......+......+ .......
T Consensus 18 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~i~~~~~~~~~~i--~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 18 DDVSFTVRPGEF--VALLGPNGAGKSTLFSLLTR-LYVAQEGQISVAGHDLRRAPRAALARL--GVVFQQPTLDLDLSVR 92 (236)
T ss_pred eeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCEEcccCChhhhhhE--EEeCCCCCCcccCcHH
Confidence 333333444544 89999999999999999998 557777888777654311010000000 0000000
Q ss_pred -ceecCCCCcCccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHH
Q 017844 94 -HVELSPSDAGFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLR 151 (365)
Q Consensus 94 -~~~~~~~~~~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll 151 (365)
.+.+.....+... ...+.+.++.+.- .....+| ...+++++++||+ ..|+......+.
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~ 172 (236)
T TIGR03864 93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV 172 (236)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 0000000000000 0011222222110 0000111 1247899999998 789999999999
Q ss_pred HHHhhhc--CceeEEEEecCCCcccHHHhccceeE
Q 017844 152 RTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 152 ~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
+.|.+.. .+..+|++|++.+.+ .. .+|+..+
T Consensus 173 ~~l~~~~~~~~~tiii~sH~~~~~-~~-~d~i~~l 205 (236)
T TIGR03864 173 AHVRALCRDQGLSVLWATHLVDEI-EA-DDRLVVL 205 (236)
T ss_pred HHHHHHHHhCCCEEEEEecChhhH-hh-CCEEEEE
Confidence 9998764 246678888777655 33 5665433
No 293
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=5.8e-09 Score=90.17 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=40.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+...+..+.+.+++...+..+|+++++.+. ...+.+|+.++
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~-~~~~~d~i~~l 202 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVED-VESLCNQVAVL 202 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-HHHhCCEEEEE
Confidence 47899999998 789999999999999887656666666665543 34455565443
No 294
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.92 E-value=1.1e-09 Score=94.92 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=38.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+. ...+.+|+.
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~-~~~~~d~i~ 202 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE-AMTMADRIA 202 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEE
Confidence 47799999998 88999999999999987642 4667777776542 234444543
No 295
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.91 E-value=6.8e-09 Score=90.57 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=38.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC 181 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~ 181 (365)
.+++++++||+ ..|+......+.+.|.+... +..+|++|++.+ ....+.+|+
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i 194 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHI 194 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEE
Confidence 47799999998 88999999999999987643 455666666655 334455665
No 296
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.91 E-value=5e-09 Score=91.30 Aligned_cols=44 Identities=7% Similarity=0.106 Sum_probs=35.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~ 172 (365)
.+++++++||+ ..|+......+.+.|.+... +..+|++|++.+.
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 204 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 47799999998 78999999999999987642 4567777877653
No 297
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=2e-09 Score=94.36 Aligned_cols=158 Identities=18% Similarity=0.354 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC-----cceeccc------ccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDLEL------TTL 89 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~------~~~ 89 (365)
+...+.-.+++|+. +-+.||+|+||||+.|+||+ |..++.+.+.+++..+ .+... ..+-+.+ ..+
T Consensus 17 a~~di~l~i~~Ge~--vaLlGpSGaGKsTlLRiIAG-Le~p~~G~I~~~~~~l-~D~~~~~~~~R~VGfvFQ~YALF~Hm 92 (345)
T COG1118 17 ALDDISLDIKSGEL--VALLGPSGAGKSTLLRIIAG-LETPDAGRIRLNGRVL-FDVSNLAVRDRKVGFVFQHYALFPHM 92 (345)
T ss_pred ccccceeeecCCcE--EEEECCCCCcHHHHHHHHhC-cCCCCCceEEECCEec-cchhccchhhcceeEEEechhhcccc
Confidence 33345555666766 89999999999999999999 8899999999998744 22111 1111000 000
Q ss_pred ccccceecCC--C--Cc-CccchhHHHHHHHH-----HHhcCCCCCCC------------CCCceEEEEeCC-CCCCHHH
Q 017844 90 SSANHVELSP--S--DA-GFQDRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (365)
Q Consensus 90 ~~~~~~~~~~--~--~~-~~~~~~~~~~~l~~-----~~~~~~~~~~~------------~~~~~vliiDE~-~~L~~~~ 146 (365)
+..+.+.+.. . .. ....+..+.+.++. ++...|..+++ ...++|+++||+ ..|+...
T Consensus 93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~v 172 (345)
T COG1118 93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172 (345)
T ss_pred hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHH
Confidence 1111111111 0 00 00111123333322 22223333332 236899999998 7788877
Q ss_pred HHHHHHHHhhhc--CceeEEEEecCCCcccHHHhcccee
Q 017844 147 QHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 147 ~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
...|.+.|.+.. -++..+++|++.+... .+-+|+.+
T Consensus 173 r~~lr~wLr~~~~~~~~ttvfVTHD~eea~-~ladrvvv 210 (345)
T COG1118 173 RKELRRWLRKLHDRLGVTTVFVTHDQEEAL-ELADRVVV 210 (345)
T ss_pred HHHHHHHHHHHHHhhCceEEEEeCCHHHHH-hhcceEEE
Confidence 777777776542 2577888888876432 34556543
No 298
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.91 E-value=5.2e-09 Score=91.64 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=35.4
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~ 172 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+.
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 209 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 47899999998 78999999999999987632 4567778877653
No 299
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=4.5e-09 Score=92.33 Aligned_cols=45 Identities=7% Similarity=0.165 Sum_probs=36.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKV 173 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l 173 (365)
.+++++++||+ ..|+......+.+.+.+.. .+..+|++|++.+.+
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~ 209 (233)
T PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA 209 (233)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 47899999998 7899999999999998763 356778888876643
No 300
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.91 E-value=5.4e-08 Score=86.94 Aligned_cols=199 Identities=15% Similarity=0.175 Sum_probs=118.8
Q ss_pred CCCCccccCHHHHHHHHHHHHcCC-C-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTEQD-C-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~~~-~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (365)
..|+.+++.....+.+....++-. . .+++|.|..||||-.+|++.-..--......+-++|... |.
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l---Pe--------- 268 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL---PE--------- 268 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC---ch---------
Confidence 358888887766666555444321 1 229999999999999998864321111111122222111 00
Q ss_pred ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh----------
Q 017844 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------- 157 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---------- 157 (365)
.......+.+.+.+.+.. .+++ ..+..-+++||+..|++..|..|++++.+.
T Consensus 269 ~~aEsElFG~apg~~gk~------GffE------------~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 269 DAAESELFGHAPGDEGKK------GFFE------------QANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred hHhHHHHhcCCCCCCCcc------chhh------------hccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcce
Confidence 000011122222211110 0110 122357999999999999999999999642
Q ss_pred -cCceeEEEEecCCC-------cccHHHhccceeEEecCCCHHH--------HHHHHHHHHHHcCC---CCCHHHHHHHH
Q 017844 158 -SASCRLILCCNSSS-------KVTEAIRSRCLNIRINSPTEEQ--------IVKVLEFIAKKEGL---QLPSGFATRLA 218 (365)
Q Consensus 158 -~~~~~~Il~t~~~~-------~l~~~l~sR~~~i~~~~~~~~~--------~~~iL~~~~~~~~~---~i~~~~~~~i~ 218 (365)
..++++|++|..+- ++-..+.-|..++.+.-|+..+ ..-++.+++.+.|+ +++++.+.++.
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~ 410 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLT 410 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Confidence 24577887776553 3556677777666655554333 23345666777666 57889999988
Q ss_pred H-HcCCCHHHHHHHHHHHHhc
Q 017844 219 E-KSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 219 ~-~~~g~lr~ai~~l~~~~~~ 238 (365)
+ .+.||+|+.-|.+=+++..
T Consensus 411 ~y~WpGNVRqL~N~iyRA~s~ 431 (511)
T COG3283 411 RYAWPGNVRQLKNAIYRALTL 431 (511)
T ss_pred HcCCCccHHHHHHHHHHHHHH
Confidence 8 5899999999998765543
No 301
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.3e-09 Score=93.42 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=85.9
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc-----ccccc
Q 017844 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL-----TTLSS 91 (365)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~ 91 (365)
|...+++.+.-.+..|.+ +.+.||+||||||+.+.+|+ +..++.+.+.+++... ..|.....-+.+ ...+.
T Consensus 14 ~~~~vl~~i~L~v~~GEf--vsilGpSGcGKSTLLriiAG-L~~p~~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv 89 (248)
T COG1116 14 GGVEVLEDINLSVEKGEF--VAILGPSGCGKSTLLRLIAG-LEKPTSGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTV 89 (248)
T ss_pred CceEEeccceeEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCccc-CCCCCCEEEEeccCcccchhhH
Confidence 334555666666677777 89999999999999999999 7888989888888655 333222111100 11111
Q ss_pred ccceecCCCCcCccc---hhHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CCCCHH----H
Q 017844 92 ANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSRE----A 146 (365)
Q Consensus 92 ~~~~~~~~~~~~~~~---~~~~~~~l~~~-----~~~~~~~~~~------------~~~~~vliiDE~-~~L~~~----~ 146 (365)
.+.+.+.....+... ...+.+.++.+ ....|..+|+ ..+++++++||+ ..|+.- .
T Consensus 90 ~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~l 169 (248)
T COG1116 90 LDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL 169 (248)
T ss_pred HhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHH
Confidence 122222222111111 11233333322 1112222221 247899999997 667654 4
Q ss_pred HHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 147 QHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 147 ~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
++.|+++.++. +..++++|++.+.
T Consensus 170 q~~l~~lw~~~--~~TvllVTHdi~E 193 (248)
T COG1116 170 QDELLRLWEET--RKTVLLVTHDVDE 193 (248)
T ss_pred HHHHHHHHHhh--CCEEEEEeCCHHH
Confidence 55566666654 4678899988763
No 302
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.90 E-value=4.3e-08 Score=78.31 Aligned_cols=28 Identities=54% Similarity=0.827 Sum_probs=24.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844 35 PHLLFYGPPGSGKKTLIMALLRQVFGPG 62 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (365)
.+++|+||+|+||||+++.+++.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 3599999999999999999999775543
No 303
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.90 E-value=4.9e-09 Score=90.81 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|+.++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~-~~~~~d~i~~l 208 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF-AREVADRVIFM 208 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 47899999998 78999999999999987643 4566777766543 24444554433
No 304
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.90 E-value=1.2e-09 Score=92.28 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=96.9
Q ss_pred CccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc
Q 017844 13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (365)
+--+|.-++++.+.-.+..|.. +.+.|+||+||||++++|++ +..+..+.+.+++.++...|..... .
T Consensus 10 ~~~YG~~~~L~gvsl~v~~Gei--v~llG~NGaGKTTlLkti~G-l~~~~~G~I~~~G~dit~~p~~~r~---------r 77 (237)
T COG0410 10 SAGYGKIQALRGVSLEVERGEI--VALLGRNGAGKTTLLKTIMG-LVRPRSGRIIFDGEDITGLPPHERA---------R 77 (237)
T ss_pred eecccceeEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeeEEECCeecCCCCHHHHH---------h
Confidence 3345666666666666777777 89999999999999999999 5666778888888766322222111 1
Q ss_pred cceecCCCCcCccchhHHHHHHHHHHhc-----------------CCC----------CCCC------------CCCceE
Q 017844 93 NHVELSPSDAGFQDRYVVQEVIKEMAKN-----------------RPI----------DTKG------------KRGFKV 133 (365)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~----------~~~~------------~~~~~v 133 (365)
.-+.++|+....+...+++|++...... .|. .+|+ ..++++
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl 157 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL 157 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE
Confidence 1233444444444444444443321100 000 1121 247899
Q ss_pred EEEeCC-CCCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCcccHHHhccce
Q 017844 134 LVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 134 liiDE~-~~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
+++||+ ..|.+.....+.+.+.+.... ...|+...+.-+.--.+-+|..
T Consensus 158 LLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~y 208 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY 208 (237)
T ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEE
Confidence 999999 789999999999999887643 3344444444444445666754
No 305
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.89 E-value=5.8e-09 Score=96.28 Aligned_cols=151 Identities=16% Similarity=0.194 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.+..|.. +.|.||+|+|||||+++|++ +..++.+.+.+++.++ ........ ......+.+.++
T Consensus 20 ~L~~vsl~i~~Gei--~gIiG~sGaGKSTLlr~I~g-l~~p~~G~I~i~G~~i-~~~~~~~l------~~~r~~Ig~v~Q 89 (343)
T TIGR02314 20 ALNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNL-LERPTSGSVIVDGQDL-TTLSNSEL------TKARRQIGMIFQ 89 (343)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEC-CcCCHHHH------HHHhcCEEEEEC
Confidence 34444445555655 89999999999999999998 6788889888888654 11000000 000001111111
Q ss_pred CcCccc------------------hh----HHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844 101 DAGFQD------------------RY----VVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D 140 (365)
Q Consensus 101 ~~~~~~------------------~~----~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~ 140 (365)
+..... .. .+.+.++.+.- ..+..+| ...+++++++||+ .
T Consensus 90 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts 169 (343)
T TIGR02314 90 HFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169 (343)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 111110 00 11122222110 0111111 1247899999998 8
Q ss_pred CCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 141 ~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.|++.....+++.|.+... +..+|++|++.+ ....+.+|+.
T Consensus 170 ~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~ 212 (343)
T TIGR02314 170 ALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVA 212 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 8999999999999987643 466777777654 3345556654
No 306
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.89 E-value=1.3e-08 Score=84.49 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc
Q 017844 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (365)
Q Consensus 23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (365)
+.+.-.+..|.. +.+.||+|+||||+++++++ +..+..+.+.+++... +.+.+++.
T Consensus 18 ~~i~l~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~~~~~---------------------i~~~~q~~ 73 (166)
T cd03223 18 KDLSFEIKPGDR--LLITGPSGTGKSSLFRALAG-LWPWGSGRIGMPEGED---------------------LLFLPQRP 73 (166)
T ss_pred ecCeEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCCce---------------------EEEECCCC
Confidence 333333444544 89999999999999999999 4566667666554110 11111110
Q ss_pred CccchhHHHHHHHH-------------HHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEec
Q 017844 103 GFQDRYVVQEVIKE-------------MAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCN 168 (365)
Q Consensus 103 ~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~ 168 (365)
... ..++.+.+.. ++-.. ....+++++++||+ ..|+......+.+.+.+. ...+|++|+
T Consensus 74 ~~~-~~tv~~nl~~~~~~~LS~G~~~rv~lar----al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh 146 (166)
T cd03223 74 YLP-LGTLREQLIYPWDDVLSGGEQQRLAFAR----LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGH 146 (166)
T ss_pred ccc-cccHHHHhhccCCCCCCHHHHHHHHHHH----HHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeC
Confidence 000 0011122110 00000 01346789999998 789999999999999876 456778887
Q ss_pred CCCcccHHHhccc
Q 017844 169 SSSKVTEAIRSRC 181 (365)
Q Consensus 169 ~~~~l~~~l~sR~ 181 (365)
+.+ .. .+.+|+
T Consensus 147 ~~~-~~-~~~d~i 157 (166)
T cd03223 147 RPS-LW-KFHDRV 157 (166)
T ss_pred Chh-HH-hhCCEE
Confidence 764 32 344544
No 307
>PF13173 AAA_14: AAA domain
Probab=98.89 E-value=1.4e-08 Score=80.47 Aligned_cols=119 Identities=20% Similarity=0.358 Sum_probs=71.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (365)
++++||+|+||||+++.+++.+. +....++++. .+...... ...+..+.
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~-----------------------------~~~~~~~~-~~~~~~~~ 53 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLL-PPENILYINF-----------------------------DDPRDRRL-ADPDLLEY 53 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-ccccceeecc-----------------------------CCHHHHHH-hhhhhHHH
Confidence 89999999999999999998764 1111122211 11110000 00001111
Q ss_pred HHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc----ccHHHhccceeEEecCCCHH
Q 017844 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK----VTEAIRSRCLNIRINSPTEE 192 (365)
Q Consensus 117 ~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~----l~~~l~sR~~~i~~~~~~~~ 192 (365)
+.... ..+..+++|||++.+. +....+..+.+.. .+..+|++++.... ....+..|...+++.|++.+
T Consensus 54 ~~~~~------~~~~~~i~iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~ 125 (128)
T PF13173_consen 54 FLELI------KPGKKYIFIDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFR 125 (128)
T ss_pred HHHhh------ccCCcEEEEehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHH
Confidence 22110 1245799999999875 4445555555543 56788888886653 34566778889999999987
Q ss_pred HH
Q 017844 193 QI 194 (365)
Q Consensus 193 ~~ 194 (365)
|.
T Consensus 126 E~ 127 (128)
T PF13173_consen 126 EF 127 (128)
T ss_pred Hh
Confidence 64
No 308
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=5.6e-09 Score=96.82 Aligned_cols=151 Identities=15% Similarity=0.188 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (365)
++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+....... ...+.+.++.
T Consensus 21 l~~vsl~i~~Gei--~~iiG~nGsGKSTLlk~L~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~-------~~~ig~v~q~ 90 (343)
T PRK11153 21 LNNVSLHIPAGEI--FGVIGASGAGKSTLIRCINL-LERPTSGRVLVDGQDLTALSEKELRKA-------RRQIGMIFQH 90 (343)
T ss_pred EEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCcCCHHHHHHH-------hcCEEEEeCC
Confidence 3333334445554 89999999999999999998 567788888887754311000000000 0011111111
Q ss_pred cCccc------------------h----hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CC
Q 017844 102 AGFQD------------------R----YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DK 141 (365)
Q Consensus 102 ~~~~~------------------~----~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~ 141 (365)
..... . ..+.+.++.+. ...+..+| ...+++++++||+ ..
T Consensus 91 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~ 170 (343)
T PRK11153 91 FNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSA 170 (343)
T ss_pred CccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 11000 0 01112222211 00111111 1247899999998 78
Q ss_pred CCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 142 LSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 142 L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
|++.....+.+.|.+... +..+|++|++.+. ...+.+|+.+
T Consensus 171 LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~-i~~~~d~v~~ 213 (343)
T PRK11153 171 LDPATTRSILELLKDINRELGLTIVLITHEMDV-VKRICDRVAV 213 (343)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 999999999999987643 4567777776653 3455566543
No 309
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.89 E-value=4.3e-09 Score=91.02 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.|.+... +..+|++|++.+ ....+.+|+..
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~ 206 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIV 206 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 47899999998 88999999999999987643 456777777654 33444455443
No 310
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=8.2e-09 Score=91.86 Aligned_cols=158 Identities=13% Similarity=0.217 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc------cccccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSANH 94 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 94 (365)
+++.+.-.+..|.. +.|.||+|+|||||++++++ +..+..+.+.+++... ..+.. ...+.... .+..+.
T Consensus 16 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~-~~~~~-~~~~v~q~~~~~~~~tv~e~ 90 (255)
T PRK11248 16 ALEDINLTLESGEL--LVVLGPSGCGKTTLLNLIAG-FVPYQHGSITLDGKPV-EGPGA-ERGVVFQNEGLLPWRNVQDN 90 (255)
T ss_pred eEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEC-CCCCC-cEEEEeCCCccCCCCcHHHH
Confidence 33444444445555 99999999999999999999 5677788887776543 11100 00000000 000000
Q ss_pred eecCCCCcCccc---hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHH
Q 017844 95 VELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRT 153 (365)
Q Consensus 95 ~~~~~~~~~~~~---~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~ 153 (365)
+.+.....+... ...+.+.++.+. ...+..+| ...+++++++||+ ..|+......+.+.
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 170 (255)
T PRK11248 91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170 (255)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 000000001000 011222222221 01111111 1247899999998 78999999999999
Q ss_pred Hhhh-c-CceeEEEEecCCCcccHHHhccceeE
Q 017844 154 MEKY-S-ASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 154 le~~-~-~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
|.+. . .+..+|++|++.+. ...+.+|..++
T Consensus 171 L~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l 202 (255)
T PRK11248 171 LLKLWQETGKQVLLITHDIEE-AVFMATELVLL 202 (255)
T ss_pred HHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 9875 2 24567777776553 33444554433
No 311
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.89 E-value=2.7e-09 Score=89.24 Aligned_cols=102 Identities=21% Similarity=0.334 Sum_probs=57.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHH
Q 017844 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI 114 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (365)
.+++|+||+|+|||++|.++++++........++....+ +......... ....+.+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L---------------------~~~l~~~~~~---~~~~~~~ 103 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL---------------------LDELKQSRSD---GSYEELL 103 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH---------------------HHHHHCCHCC---TTHCHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce---------------------eccccccccc---cchhhhc
Confidence 459999999999999999999987553322222221111 1100000000 0122334
Q ss_pred HHHHhcCCCCCCCCCCceEEEEeCCCC--CCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 115 KEMAKNRPIDTKGKRGFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~vliiDE~~~--L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
+.+. +.+++||||+.. .+....+.|+++++....+...|++||...
T Consensus 104 ~~l~-----------~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~~ 151 (178)
T PF01695_consen 104 KRLK-----------RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLSP 151 (178)
T ss_dssp HHHH-----------TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-H
T ss_pred Cccc-----------cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCch
Confidence 4433 347999999854 456667778888887544557888888553
No 312
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.88 E-value=1.6e-09 Score=100.50 Aligned_cols=149 Identities=14% Similarity=0.213 Sum_probs=83.5
Q ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcC
Q 017844 24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103 (365)
Q Consensus 24 ~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (365)
.+...+..|.. +.|.||+|+||||++++|++ +..+..+.+.+++..+...+....... ....+.+..+...
T Consensus 11 ~vs~~i~~Gei--~~l~G~sGsGKSTLLr~L~G-l~~p~~G~I~i~G~~i~~~~~~~~~~~------rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 11 DADLAIAKGEI--FVIMGLSGSGKSTTVRMLNR-LIEPTAGQIFIDGENIMKQSPVELREV------RRKKIGMVFQQFA 81 (363)
T ss_pred eeEEEEcCCCE--EEEECCCCChHHHHHHHHhC-CCCCCceEEEECCEECCcCCHHHHHHH------HhCcEEEEECCCc
Confidence 33334445555 99999999999999999999 667888988888865511000000000 0011222222211
Q ss_pred ccchhHHH------------------HHHHHHHhcCCC---------CCC------------CCCCceEEEEeCC-CCCC
Q 017844 104 FQDRYVVQ------------------EVIKEMAKNRPI---------DTK------------GKRGFKVLVLNEV-DKLS 143 (365)
Q Consensus 104 ~~~~~~~~------------------~~l~~~~~~~~~---------~~~------------~~~~~~vliiDE~-~~L~ 143 (365)
.....++. +...++.....+ .+| ...+++++++||+ ..|+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD 161 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 11111111 111111111111 111 1347899999998 8899
Q ss_pred HHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 144 ~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
+.....+.+.+.+... +..+|++|++.+.. ..+.+|+.
T Consensus 162 ~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea-~~~~drI~ 201 (363)
T TIGR01186 162 PLIRDSMQDELKKLQATLQKTIVFITHDLDEA-IRIGDRIV 201 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence 9999988888876532 46688888876643 34445653
No 313
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.88 E-value=2.9e-09 Score=94.15 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~ 72 (365)
.+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..
T Consensus 16 ~il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~ 65 (243)
T TIGR02315 16 QALKNINLNINPGEF--VAIIGPSGAGKSTLLRCINR-LVEPSSGSILLEGTD 65 (243)
T ss_pred ceeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CcCCCccEEEECCEE
Confidence 344555445555555 99999999999999999998 556777888777654
No 314
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.87 E-value=1.6e-09 Score=93.39 Aligned_cols=43 Identities=7% Similarity=0.180 Sum_probs=34.7
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCC
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~ 171 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++..
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 47899999998 88999999999999987643 456777777764
No 315
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.87 E-value=1.5e-08 Score=86.50 Aligned_cols=129 Identities=14% Similarity=0.188 Sum_probs=70.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc----------cceecCCCCcCccc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELSPSDAGFQD 106 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 106 (365)
+.|.||+|+||||+++++++ +..+..+.+.+++.... ...... + ...... +.+.+.....+ .
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~-~~~~~~--~--~~~~~~~~~~~~~tv~~~l~~~~~~~~--~ 100 (195)
T PRK13541 29 TYIKGANGCGKSSLLRMIAG-IMQPSSGNIYYKNCNIN-NIAKPY--C--TYIGHNLGLKLEMTVFENLKFWSEIYN--S 100 (195)
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCcccC-hhhhhh--E--EeccCCcCCCccCCHHHHHHHHHHhcc--c
Confidence 89999999999999999999 56777888887775431 000000 0 000000 00000000000 0
Q ss_pred hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhh-cCceeEEEEe
Q 017844 107 RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCC 167 (365)
Q Consensus 107 ~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~-~~~~~~Il~t 167 (365)
...+.+.++.+. ......+| ...+++++++||+ ..+++.....+.+.+.+. ..+..+|+++
T Consensus 101 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 180 (195)
T PRK13541 101 AETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSS 180 (195)
T ss_pred HHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 001112211110 00000111 1247799999998 789999999998888643 3346677777
Q ss_pred cCCCcc
Q 017844 168 NSSSKV 173 (365)
Q Consensus 168 ~~~~~l 173 (365)
++...+
T Consensus 181 h~~~~i 186 (195)
T PRK13541 181 HLESSI 186 (195)
T ss_pred CCcccc
Confidence 776643
No 316
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.87 E-value=3.5e-09 Score=93.17 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=39.4
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.|.+... +..+|++|++.+ ....+.+++..
T Consensus 170 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 226 (236)
T cd03267 170 HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLV 226 (236)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 47899999998 88999999999999987643 456677776655 33444455443
No 317
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.87 E-value=6.8e-09 Score=91.37 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=39.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+.. .+..+|++|++.+. ...+.+|+.+
T Consensus 160 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~ 215 (236)
T cd03219 160 TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV-VMSLADRVTV 215 (236)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEE
Confidence 37799999998 7899999999999998764 34567777776553 3445566543
No 318
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.87 E-value=1.7e-07 Score=90.41 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=75.6
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------CceeEEEEecCCC-------cccHHHhcccee--EEecCC
Q 017844 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSP 189 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------~~~~~Il~t~~~~-------~l~~~l~sR~~~--i~~~~~ 189 (365)
...+++|||++.|+...|..|++.+++.. .++++|++|+... .+.+.+..|+.. +.++|+
T Consensus 233 ~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppL 312 (441)
T PRK10365 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSL 312 (441)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCCh
Confidence 34689999999999999999999998632 2456777776543 244555556544 445554
Q ss_pred CH--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 017844 190 TE--EQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ 238 (365)
Q Consensus 190 ~~--~~~~~iL~~~~~----~~~---~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~ 238 (365)
.. +++..+....+. +.+ ..++++++..+.... .||+|++.+.++.++..
T Consensus 313 reR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 313 RQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred hhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 32 244444444333 223 358999999999965 99999999999987764
No 319
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.86 E-value=1.1e-08 Score=87.47 Aligned_cols=142 Identities=15% Similarity=0.274 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.++.|.+ +.+.||+|||||||...++. +..|+.+.+.+++.+. .....+.. ..-...++.+..+
T Consensus 20 ~L~~v~l~i~~Ge~--vaI~GpSGSGKSTLLniig~-ld~pt~G~v~i~g~d~-~~l~~~~~-----~~~R~~~iGfvFQ 90 (226)
T COG1136 20 ALKDVNLEIEAGEF--VAIVGPSGSGKSTLLNLLGG-LDKPTSGEVLINGKDL-TKLSEKEL-----AKLRRKKIGFVFQ 90 (226)
T ss_pred ecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCceEEECCEEc-CcCCHHHH-----HHHHHHhEEEECc
Confidence 34444445566766 99999999999999999987 7788888888888554 11110000 0000122333333
Q ss_pred CcCccchhHHHHHHH------------------HHHh----------cCCCCCCC------------CCCceEEEEeCC-
Q 017844 101 DAGFQDRYVVQEVIK------------------EMAK----------NRPIDTKG------------KRGFKVLVLNEV- 139 (365)
Q Consensus 101 ~~~~~~~~~~~~~l~------------------~~~~----------~~~~~~~~------------~~~~~vliiDE~- 139 (365)
.+..-+..++.+.+. .+.. ..|..+|+ ..++++++-||+
T Consensus 91 ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPT 170 (226)
T COG1136 91 NFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPT 170 (226)
T ss_pred cCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCcc
Confidence 322222222222211 1111 11212222 247899999999
Q ss_pred CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCC
Q 017844 140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSS 171 (365)
Q Consensus 140 ~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~ 171 (365)
..|+.+....+++++.+... +..+|++|+++.
T Consensus 171 gnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~ 204 (226)
T COG1136 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204 (226)
T ss_pred ccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 88999988888888887632 457777777644
No 320
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.86 E-value=2.1e-09 Score=92.16 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccc---------
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS--------- 91 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (365)
+++.+.-.+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++.............+ .....
T Consensus 15 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~i--~~~~q~~~~~~~~t 89 (201)
T cd03231 15 LFSGLSFTLAAGEA--LQVTGPNGSGKTTLLRILAG-LSPPLAGRVLLNGGPLDFQRDSIARGL--LYLGHAPGIKTTLS 89 (201)
T ss_pred eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccccHHhhhhe--EEeccccccCCCcC
Confidence 34444444555555 99999999999999999999 557777877777644310000000000 00000
Q ss_pred -ccceecCCCCcCccchhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844 92 -ANHVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR 152 (365)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~ 152 (365)
.+.+.+.. .......+.+.++.+.- .....+| ...+++++++||+ ..|+......+.+
T Consensus 90 v~e~l~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~ 166 (201)
T cd03231 90 VLENLRFWH---ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAE 166 (201)
T ss_pred HHHHHHhhc---ccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 00000000 00011112222222110 0000111 1247799999998 8899999999999
Q ss_pred HHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 153 TMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 153 ~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+.+... ...+|++|++...+.. .-+|+..
T Consensus 167 ~l~~~~~~g~tiii~sH~~~~~~~-~~~~~~~ 197 (201)
T cd03231 167 AMAGHCARGGMVVLTTHQDLGLSE-AGARELD 197 (201)
T ss_pred HHHHHHhCCCEEEEEecCchhhhh-ccceeEe
Confidence 9976533 4567777777665544 4455543
No 321
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.86 E-value=5.4e-08 Score=88.23 Aligned_cols=195 Identities=18% Similarity=0.184 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhc--CCCCccceeccccceecCCCcceecccccccc-cc
Q 017844 19 QDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNIDLELTTLSS-AN 93 (365)
Q Consensus 19 ~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 93 (365)
+..++.+...+.. .....+.|+|++|+|||++|+.+++... ......+.++.... .....+ ... ..
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~----~~~i~~ 72 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQL----LEQILR 72 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHH----HHHHHH
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----cccccc----cccccc
Confidence 4556777777766 3333399999999999999999987632 21111111111000 000000 000 00
Q ss_pred ceecCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 94 HVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 94 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.....+. ...+.....+.+.... ..++-++|+|+++. ......+...+.....++++|+||.+..
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~l~~~L---------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~kilvTTR~~~- 140 (287)
T PF00931_consen 73 QLGEPDSSISDPKDIEELQDQLRELL---------KDKRCLLVLDDVWD--EEDLEELREPLPSFSSGSKILVTTRDRS- 140 (287)
T ss_dssp HHTCC-STSSCCSSHHHHHHHHHHHH---------CCTSEEEEEEEE-S--HHHH-------HCHHSS-EEEEEESCGG-
T ss_pred cccccccccccccccccccccchhhh---------ccccceeeeeeecc--cccccccccccccccccccccccccccc-
Confidence 000110011 1111111222222221 23357999999873 3344444555544455778888887643
Q ss_pred ccHHHhccceeEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEG---LQLPSGFATRLAEKSNRSLRRAILSFET 234 (365)
Q Consensus 173 l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~---~~i~~~~~~~i~~~~~g~lr~ai~~l~~ 234 (365)
+..........+++++++.++..+.+.+.+.... ..-.++....|++.++|.+-.+.-+...
T Consensus 141 v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~ 205 (287)
T PF00931_consen 141 VAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASY 205 (287)
T ss_dssp GGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3333333367899999999999999998875444 1222567789999998866544443333
No 322
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=7.1e-09 Score=89.65 Aligned_cols=153 Identities=18% Similarity=0.271 Sum_probs=80.2
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceeccccc------cccccceecCCC
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTT------LSSANHVELSPS 100 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~ 100 (365)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+ ......+.... .+..+.+.+...
T Consensus 20 ~i~~Ge~--~~l~G~nGsGKSTLl~~l~g-l~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 96 (211)
T cd03298 20 TFAQGEI--TAIVGPSGSGKSTLLNLIAG-FETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLS 96 (211)
T ss_pred EEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccc
Confidence 3344444 99999999999999999998 55777788877775431100 00000000000 000011111000
Q ss_pred C-cCc--cchhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC
Q 017844 101 D-AGF--QDRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 101 ~-~~~--~~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~ 159 (365)
. ... .....+.+.++.+. ...+..+| ...+++++++||+ ..|+......+.+.|.+...
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 176 (211)
T cd03298 97 PGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA 176 (211)
T ss_pred cccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 000 00111222222211 11111111 1247899999998 78999999999999987642
Q ss_pred --ceeEEEEecCCCcccHHHhccceeE
Q 017844 160 --SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 160 --~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
...+|++|++.+. ...+.+|+..+
T Consensus 177 ~~~~tii~~sH~~~~-~~~~~d~i~~l 202 (211)
T cd03298 177 ETKMTVLMVTHQPED-AKRLAQRVVFL 202 (211)
T ss_pred hcCCEEEEEecCHHH-HHhhhCEEEEE
Confidence 4566777766553 33445565443
No 323
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.86 E-value=6.1e-09 Score=91.06 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=40.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+..++..+.+.+.+... ...+|+++++.......+.+|+.++
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence 36799999998 78999999999999987643 4567777777643334455555443
No 324
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.85 E-value=6.2e-09 Score=88.73 Aligned_cols=137 Identities=20% Similarity=0.303 Sum_probs=75.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec--cc-cccccccceecCCCCcCccchhHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL--EL-TTLSSANHVELSPSDAGFQDRYVVQEV 113 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (365)
+.|.|+||+||||+.+.|++ +..|+.+.+.+++... | ..+. .+ ...+..+.+.+...-.+.. +..+++.
T Consensus 56 vGiiG~NGaGKSTLlkliaG-i~~Pt~G~v~v~G~v~---~---li~lg~Gf~pelTGreNi~l~~~~~G~~-~~ei~~~ 127 (249)
T COG1134 56 VGIIGHNGAGKSTLLKLIAG-IYKPTSGKVKVTGKVA---P---LIELGAGFDPELTGRENIYLRGLILGLT-RKEIDEK 127 (249)
T ss_pred EEEECCCCCcHHHHHHHHhC-ccCCCCceEEEcceEe---h---hhhcccCCCcccchHHHHHHHHHHhCcc-HHHHHHH
Confidence 78999999999999999999 7789999888877532 0 0000 00 0000011111111111111 1112222
Q ss_pred HHHHHhcC--------CC-------------CCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhh-cCceeEEEEecCC
Q 017844 114 IKEMAKNR--------PI-------------DTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNSS 170 (365)
Q Consensus 114 l~~~~~~~--------~~-------------~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~-~~~~~~Il~t~~~ 170 (365)
.+++.+.. |+ +.+..-+++|++|||+ ..-+...+..-.+.+++. ..+..+|+++++.
T Consensus 128 ~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 128 VDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 22222211 11 2234457899999998 555677777777777776 5566677777765
Q ss_pred CcccHHHhccce
Q 017844 171 SKVTEAIRSRCL 182 (365)
Q Consensus 171 ~~l~~~l~sR~~ 182 (365)
. ....+.+|+.
T Consensus 208 ~-~I~~~Cd~~i 218 (249)
T COG1134 208 G-AIKQYCDRAI 218 (249)
T ss_pred H-HHHHhcCeeE
Confidence 5 3344555553
No 325
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=2.9e-09 Score=94.16 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=38.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++... ...+.+|+.
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~ 212 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV-ARKTASRVV 212 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEE
Confidence 47899999998 78999999999999987643 4556666666553 344556653
No 326
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.9e-09 Score=85.06 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=77.6
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (365)
.+..|.. +.++||+|+||||+.|.+|+ +..|..+.+++++......+......+ -+..-..+....
T Consensus 24 ~l~~Ge~--~~i~G~NG~GKTtLLRilaG-Ll~p~~G~v~~~~~~i~~~~~~~~~~l-----------~yLGH~~giK~e 89 (209)
T COG4133 24 TLNAGEA--LQITGPNGAGKTTLLRILAG-LLRPDAGEVYWQGEPIQNVRESYHQAL-----------LYLGHQPGIKTE 89 (209)
T ss_pred EEcCCCE--EEEECCCCCcHHHHHHHHHc-ccCCCCCeEEecCCCCccchhhHHHHH-----------HHhhccccccch
Confidence 3344544 89999999999999999999 778888988888755411111000111 111111222333
Q ss_pred hHHHHHHHHHHhcCC---------------C---------CCCC------------CCCceEEEEeCC-CCCCHHHHHHH
Q 017844 108 YVVQEVIKEMAKNRP---------------I---------DTKG------------KRGFKVLVLNEV-DKLSREAQHSL 150 (365)
Q Consensus 108 ~~~~~~l~~~~~~~~---------------~---------~~~~------------~~~~~vliiDE~-~~L~~~~~~~L 150 (365)
.++.|.++.+..... + .+|. -....+.|+||+ -.++++....|
T Consensus 90 LTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l 169 (209)
T COG4133 90 LTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169 (209)
T ss_pred hhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH
Confidence 334444433322111 0 0110 135679999998 78999999889
Q ss_pred HHHHhhhcCceeEEE-EecCCCcc
Q 017844 151 RRTMEKYSASCRLIL-CCNSSSKV 173 (365)
Q Consensus 151 l~~le~~~~~~~~Il-~t~~~~~l 173 (365)
-..|.......-+|+ +|+.+-.+
T Consensus 170 ~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 170 TALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred HHHHHHHhcCCCEEEEecCCccCC
Confidence 899988755544555 44444444
No 327
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.85 E-value=1.8e-08 Score=88.99 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=75.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (365)
+.|.||+|+||||+++++++ +..+..+.+.+++..+...|....... ..+..+.+........ .......+.++.
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G-~~~p~~G~i~~~g~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~-~~~~~~~~~l~~ 102 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAG-VLKPDEGDIEIELDTVSYKPQYIKADY---EGTVRDLLSSITKDFY-THPYFKTEIAKP 102 (246)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCcCCCCeEEECCceEEEecccccCCC---CCCHHHHHHHHhhhcc-ccHHHHHHHHHH
Confidence 89999999999999999999 556777777666533312221110000 0000001110000000 000011122221
Q ss_pred HH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHH
Q 017844 117 MA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEA 176 (365)
Q Consensus 117 ~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~ 176 (365)
+. ......+| ...+++++++||+ ..|+......+.+.|.+... +..+|+++++.+ ....
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~ 181 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDY 181 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence 10 00000111 1347799999998 78999999999988887632 456777776654 3345
Q ss_pred HhccceeE
Q 017844 177 IRSRCLNI 184 (365)
Q Consensus 177 l~sR~~~i 184 (365)
+.+|+.++
T Consensus 182 ~~d~i~~l 189 (246)
T cd03237 182 LADRLIVF 189 (246)
T ss_pred hCCEEEEE
Confidence 55665433
No 328
>PRK06921 hypothetical protein; Provisional
Probab=98.84 E-value=1.3e-08 Score=90.68 Aligned_cols=120 Identities=17% Similarity=0.255 Sum_probs=66.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhcCC-CCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHH
Q 017844 34 CPHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE 112 (365)
Q Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (365)
..+++|+||+|+|||+|+.++++++... ....+++.... .+...... .+ ...+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~---------------------l~~~l~~~---~~--~~~~ 170 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE---------------------GFGDLKDD---FD--LLEA 170 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH---------------------HHHHHHHH---HH--HHHH
Confidence 3459999999999999999999987543 22111111100 00000000 00 0111
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEeCCCC-------CCHHHHHHHHHHHhhhcC-ceeEEEEecCCCc----ccHHHhcc
Q 017844 113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDK-------LSREAQHSLRRTMEKYSA-SCRLILCCNSSSK----VTEAIRSR 180 (365)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~vliiDE~~~-------L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~----l~~~l~sR 180 (365)
.+.. ....++|||||++. .+......|+.+++.... +..+|++||.... +.+.+.||
T Consensus 171 ~~~~-----------~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~~~~~l~sR 239 (266)
T PRK06921 171 KLNR-----------MKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR 239 (266)
T ss_pred HHHH-----------hcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhhhhhHHHHH
Confidence 1111 12458999999943 445556678888876543 4567888876542 23455555
Q ss_pred ----ce--eEEecCCC
Q 017844 181 ----CL--NIRINSPT 190 (365)
Q Consensus 181 ----~~--~i~~~~~~ 190 (365)
|. .+.|+..+
T Consensus 240 i~~r~~~~~i~~~g~s 255 (266)
T PRK06921 240 IVEMCKDYLVIIKGDS 255 (266)
T ss_pred HHHhccCeEEEecCcc
Confidence 32 56665543
No 329
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=9.8e-09 Score=95.46 Aligned_cols=158 Identities=13% Similarity=0.231 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceeccccc------cccccc
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTT------LSSANH 94 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~ 94 (365)
++.+.-.+..|.. +.|.||+|+||||++++|++ +..++.|.+.+++..+...| ......+.+.. .+..+.
T Consensus 20 l~~vsl~i~~Ge~--~~llG~sGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eN 96 (356)
T PRK11650 20 IKGIDLDVADGEF--IVLVGPSGCGKSTLLRMVAG-LERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVREN 96 (356)
T ss_pred EeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHH
Confidence 3334444445554 89999999999999999999 67888898888886551111 11111110000 000000
Q ss_pred eecCCCCcCccc---hhHHHHHHHHH-----HhcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHH
Q 017844 95 VELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRT 153 (365)
Q Consensus 95 ~~~~~~~~~~~~---~~~~~~~l~~~-----~~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~ 153 (365)
+.+.....+... ...+.+.++.+ ....+..+| ...+++++++||+ ..|+......+.+.
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~ 176 (356)
T PRK11650 97 MAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLE 176 (356)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 111000000000 00111222211 111111111 1347899999998 78999999988888
Q ss_pred HhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 154 MEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 154 le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
|.+... +..+|++|++.... ..+.+|+.+
T Consensus 177 l~~l~~~~g~tii~vTHd~~ea-~~l~D~i~v 207 (356)
T PRK11650 177 IQRLHRRLKTTSLYVTHDQVEA-MTLADRVVV 207 (356)
T ss_pred HHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence 877543 46788888876543 345566543
No 330
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=1.2e-08 Score=90.05 Aligned_cols=156 Identities=12% Similarity=0.177 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc--ceeccccccccc------
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLELTTLSSA------ 92 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~------ 92 (365)
+++.+.-.+..|.. +.|.||+|+||||+++.+++ +..+..|.+.+++......+... ...+ ......
T Consensus 18 ~l~~~sl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i--~~~~q~~~~~~~ 92 (241)
T PRK10895 18 VVEDVSLTVNSGEI--VGLLGPNGAGKTTTFYMVVG-IVPRDAGNIIIDDEDISLLPLHARARRGI--GYLPQEASIFRR 92 (241)
T ss_pred EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHHhCe--EEeccCCccccc
Confidence 33444444445554 99999999999999999999 55777787877765431000000 0000 000000
Q ss_pred ----cceecCCCCc-Cccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844 93 ----NHVELSPSDA-GFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREA 146 (365)
Q Consensus 93 ----~~~~~~~~~~-~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~ 146 (365)
+.+.+...-. .... ...+.+.++.+.- .....+| ...+++++++||+ ..|+...
T Consensus 93 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172 (241)
T ss_pred CcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0000000000 0000 0112222222110 0000111 1247799999998 7899999
Q ss_pred HHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 147 ~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
...+.+.+.+... +..+|++|++.+. ...+.+|+.
T Consensus 173 ~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~d~v~ 208 (241)
T PRK10895 173 VIDIKRIIEHLRDSGLGVLITDHNVRE-TLAVCERAY 208 (241)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEcCHHH-HHHhcCEEE
Confidence 9888888877643 4566777766543 334555553
No 331
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.2e-08 Score=95.22 Aligned_cols=156 Identities=16% Similarity=0.275 Sum_probs=97.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee-cCCCCcCccchhHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGFQDRYVVQEVIK 115 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 115 (365)
++||||||||||.+||.|..-|++..+..+ +|-++ +. |+ ......+|.++.
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNArePKIV--NGPeI---------------------L~KYV-----GeSE~NvR~LFa 310 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNAREPKIV--NGPEI---------------------LNKYV-----GESEENVRKLFA 310 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCCccc--CcHHH---------------------HHHhh-----cccHHHHHHHHH
Confidence 899999999999999999997766554321 12111 11 11 112224555555
Q ss_pred HHHhcCCCCCCCCCCceEEEEeCCCCCC-------------HHHHHHHHHHHhh--hcCceeEEEEecCCCcccHHHhcc
Q 017844 116 EMAKNRPIDTKGKRGFKVLVLNEVDKLS-------------REAQHSLRRTMEK--YSASCRLILCCNSSSKVTEAIRSR 180 (365)
Q Consensus 116 ~~~~~~~~~~~~~~~~~vliiDE~~~L~-------------~~~~~~Ll~~le~--~~~~~~~Il~t~~~~~l~~~l~sR 180 (365)
+..+.... ....++-.|+|+||+|.+. ....|.||.-|+. .-.++.+|..||..+-+++++.+-
T Consensus 311 DAEeE~r~-~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRP 389 (744)
T KOG0741|consen 311 DAEEEQRR-LGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRP 389 (744)
T ss_pred hHHHHHHh-hCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCC
Confidence 44322111 0123445899999999763 3467778877763 345788999999999999999874
Q ss_pred c---eeEEecCCCHHHHHHHHHH---HHHHcCCCCCHHHHHHHHHHc
Q 017844 181 C---LNIRINSPTEEQIVKVLEF---IAKKEGLQLPSGFATRLAEKS 221 (365)
Q Consensus 181 ~---~~i~~~~~~~~~~~~iL~~---~~~~~~~~i~~~~~~~i~~~~ 221 (365)
. ..+++.-|+..-+.++++- ..+..+.-=++-.++.||..+
T Consensus 390 GRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lT 436 (744)
T KOG0741|consen 390 GRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALT 436 (744)
T ss_pred CceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHh
Confidence 4 2678888888877777653 333333322233466666654
No 332
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.84 E-value=1.2e-08 Score=89.93 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=39.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+....+.+.+.+.+... ...+|++|++.+ ....+.+|+..
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~ 203 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVV 203 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEE
Confidence 47799999998 88999999999999987644 456777776654 33445566543
No 333
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.84 E-value=3e-08 Score=80.18 Aligned_cols=111 Identities=17% Similarity=0.269 Sum_probs=68.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (365)
+.+.||+|+||||+++++++ +..+..+.+.+++.. .+.+.++ ... ...+. +.
T Consensus 29 ~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~~~~---------------------~i~~~~~---lS~-G~~~r-v~- 80 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAG-ELEPDEGIVTWGSTV---------------------KIGYFEQ---LSG-GEKMR-LA- 80 (144)
T ss_pred EEEECCCCCCHHHHHHHHcC-CCCCCceEEEECCeE---------------------EEEEEcc---CCH-HHHHH-HH-
Confidence 89999999999999999998 456666666655421 1222221 111 11111 11
Q ss_pred HHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 117 MAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 117 ~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
++. . ...+++++++||+ ..++......+.+.+.+. +..+++++++.+. ...+.+|+.++
T Consensus 81 lar--a----l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~-~~~~~d~v~~l 140 (144)
T cd03221 81 LAK--L----LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYF-LDQVATKIIEL 140 (144)
T ss_pred HHH--H----HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHH-HHHhCCEEEEE
Confidence 111 1 1345689999998 789999999999999876 3456666666543 34444555433
No 334
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.84 E-value=1.2e-08 Score=90.06 Aligned_cols=157 Identities=15% Similarity=0.254 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC--c-ceeccccccccc-----
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--R-NIDLELTTLSSA----- 92 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~--~-~~~~~~~~~~~~----- 92 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++..+...+.. . ...+ ......
T Consensus 16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i--~~~~q~~~~~~ 90 (240)
T PRK09493 16 VLHNIDLNIDQGEV--VVIIGPSGSGKSTLLRCINK-LEEITSGDLIVDGLKVNDPKVDERLIRQEA--GMVFQQFYLFP 90 (240)
T ss_pred EeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCChhHHHHhhce--EEEecccccCC
Confidence 34444444445544 89999999999999999999 5577788888877544110000 0 0000 000000
Q ss_pred -----cceecCCCC-cCccch---hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHH
Q 017844 93 -----NHVELSPSD-AGFQDR---YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSRE 145 (365)
Q Consensus 93 -----~~~~~~~~~-~~~~~~---~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~ 145 (365)
+.+.+.... .+.... ..+.+.++.+. ...+..+| ...+++++++||+ ..|+..
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 170 (240)
T PRK09493 91 HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170 (240)
T ss_pred CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 000000000 000000 01112222110 00000111 1247799999998 789999
Q ss_pred HHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 146 ~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
....+.+.+.+... +..+|++|++.+. .+.+.+|+..
T Consensus 171 ~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~ 208 (240)
T PRK09493 171 LRHEVLKVMQDLAEEGMTMVIVTHEIGF-AEKVASRLIF 208 (240)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 99999999987643 4567777776653 3455566543
No 335
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.83 E-value=9.7e-09 Score=96.10 Aligned_cols=158 Identities=16% Similarity=0.254 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceeccccc------cccccc
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTT------LSSANH 94 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~ 94 (365)
++.+.-.+..|.. +.|.||+|+|||||+++|++ +..++.+.+.+++..+...+ ......+.+.. .+..+.
T Consensus 19 l~~vsl~i~~Ge~--~~l~G~nGsGKSTLL~~iaG-l~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~en 95 (369)
T PRK11000 19 SKDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAG-LEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAEN 95 (369)
T ss_pred EeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHH
Confidence 3334334445554 89999999999999999999 66788888888776541111 00101110000 000000
Q ss_pred eecCCCCcCccch---hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHH
Q 017844 95 VELSPSDAGFQDR---YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRT 153 (365)
Q Consensus 95 ~~~~~~~~~~~~~---~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~ 153 (365)
+.+.....+.... ..+.+.++.+.- ..+..+| ...+++++++||+ ..|+......+.+.
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~ 175 (369)
T PRK11000 96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 175 (369)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0000000000000 011222222110 0111111 1247899999998 78999999999888
Q ss_pred HhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 154 MEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 154 le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
|.+... +..+|++|++.+. ...+.+|+.+
T Consensus 176 L~~l~~~~g~tvI~vTHd~~~-~~~~~d~i~v 206 (369)
T PRK11000 176 ISRLHKRLGRTMIYVTHDQVE-AMTLADKIVV 206 (369)
T ss_pred HHHHHHHhCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 887632 4677888877653 2345566543
No 336
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.83 E-value=4.7e-09 Score=89.21 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=34.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCC
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~ 171 (365)
.+++++++||+ ..|+......+.+.|.+... +..+|++|++.+
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 144 MRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 47799999998 88999999999999987643 456777777654
No 337
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=1.3e-08 Score=89.81 Aligned_cols=159 Identities=16% Similarity=0.229 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccccc------ccccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT------LSSAN 93 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~------~~~~~ 93 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++......+. .....+.... .+..+
T Consensus 17 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 93 (239)
T cd03296 17 ALDDVSLDIPSGEL--VALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence 34444444445554 89999999999999999999 556777888777754311000 0001000000 00000
Q ss_pred ceecCCCCcCc---cch----hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844 94 HVELSPSDAGF---QDR----YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH 148 (365)
Q Consensus 94 ~~~~~~~~~~~---~~~----~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~ 148 (365)
.+.+.....+. ... ..+.+.++.+. ......+| ...+++++++||+ ..|+.....
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~ 173 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173 (239)
T ss_pred HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 01110000000 000 01122222211 01111111 1247789999998 889999999
Q ss_pred HHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 149 ~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+.+.+.+... ...+|++|++.+.+ ..+.+|+.+
T Consensus 174 ~l~~~l~~~~~~~~~tvii~sH~~~~~-~~~~d~i~~ 209 (239)
T cd03296 174 ELRRWLRRLHDELHVTTVFVTHDQEEA-LEVADRVVV 209 (239)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence 99999987643 45677777776532 344455433
No 338
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.1e-07 Score=87.09 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=48.8
Q ss_pred ccHHHhccc-eeEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Q 017844 173 VTEAIRSRC-LNIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS---NRSLRRAILSFETC 235 (365)
Q Consensus 173 l~~~l~sR~-~~i~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~~~~i~~~~---~g~lr~ai~~l~~~ 235 (365)
+.|.+.-|+ ..+.|..++.+++..+|.. .+...++ .+++++++.||+.+ +...|-+..+++++
T Consensus 425 mIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~ 504 (564)
T KOG0745|consen 425 MIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESL 504 (564)
T ss_pred CcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 345555666 3788999999999998853 1122333 57899999999854 45778888889888
Q ss_pred HhcCC
Q 017844 236 RVQQY 240 (365)
Q Consensus 236 ~~~~~ 240 (365)
.+.+.
T Consensus 505 Lleam 509 (564)
T KOG0745|consen 505 LLEAM 509 (564)
T ss_pred Hhhhc
Confidence 76653
No 339
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=1.2e-08 Score=89.95 Aligned_cols=157 Identities=12% Similarity=0.101 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc--ceeccccccccc------
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLELTTLSSA------ 92 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~------ 92 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++......+... ...+ ......
T Consensus 20 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i--~~~~q~~~~~~~ 94 (237)
T PRK11614 20 ALHEVSLHINQGEI--VTLIGANGAGKTTLLGTLCG-DPRATSGRIVFDGKDITDWQTAKIMREAV--AIVPEGRRVFSR 94 (237)
T ss_pred eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CCCCCCceEEECCEecCCCCHHHHHHhCE--EEeccCcccCCC
Confidence 44444444555555 89999999999999999998 55777788877775431100000 0000 000000
Q ss_pred ----cceecCCCCcCcc-chhHHHHHHHHHH------hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844 93 ----NHVELSPSDAGFQ-DRYVVQEVIKEMA------KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH 148 (365)
Q Consensus 93 ----~~~~~~~~~~~~~-~~~~~~~~l~~~~------~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~ 148 (365)
+.+.+........ ....+.+.++.+. ......+| ...+++++++||+ ..|+.....
T Consensus 95 ~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~ 174 (237)
T PRK11614 95 MTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174 (237)
T ss_pred CcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHH
Confidence 0000000000000 0011122222221 11111111 1237899999998 889999999
Q ss_pred HHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 149 ~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+.+.+.+... +..+|++|++.+. ...+.+|+.+
T Consensus 175 ~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~ 209 (237)
T PRK11614 175 QIFDTIEQLREQGMTIFLVEQNANQ-ALKLADRGYV 209 (237)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHH-HHhhCCEEEE
Confidence 99999887643 4566677666543 3345566543
No 340
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.83 E-value=3.6e-09 Score=93.98 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=39.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+ ....+.+|+.++
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l 217 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFM 217 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 37889999998 78999999999999887643 456666666654 334555665443
No 341
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.83 E-value=1.5e-08 Score=87.18 Aligned_cols=146 Identities=15% Similarity=0.175 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccc----------
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS---------- 91 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------- 91 (365)
++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.............+ .....
T Consensus 17 l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~p~~G~v~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~tv 91 (204)
T PRK13538 17 FSGLSFTLNAGEL--VQIEGPNGAGKTSLLRILAG-LARPDAGEVLWQGEPIRRQRDEYHQDL--LYLGHQPGIKTELTA 91 (204)
T ss_pred EecceEEECCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEcccchHHhhhhe--EEeCCccccCcCCcH
Confidence 3333334444544 89999999999999999999 557778888777654310000000000 00000
Q ss_pred ccceecCCCCcCccchhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHH
Q 017844 92 ANHVELSPSDAGFQDRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRT 153 (365)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~ 153 (365)
.+.+.+.....+......+.+.++.+. ......+| ...+++++++||+ ..|+......+.+.
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 171 (204)
T PRK13538 92 LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171 (204)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 000000000000001111222222211 10100111 1347899999998 78999999999999
Q ss_pred Hhhhc-CceeEEEEecCCCc
Q 017844 154 MEKYS-ASCRLILCCNSSSK 172 (365)
Q Consensus 154 le~~~-~~~~~Il~t~~~~~ 172 (365)
+.+.. .+..+|++|++.+.
T Consensus 172 l~~~~~~~~tiii~sh~~~~ 191 (204)
T PRK13538 172 LAQHAEQGGMVILTTHQDLP 191 (204)
T ss_pred HHHHHHCCCEEEEEecChhh
Confidence 98763 34567777777654
No 342
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.83 E-value=4.3e-09 Score=93.86 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=39.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+.. .+..+|++|++.+ ....+.+|+..+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 214 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLL 214 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEE
Confidence 36799999998 7899999999999998764 3456777776654 334455665433
No 343
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.2e-08 Score=94.61 Aligned_cols=145 Identities=14% Similarity=0.209 Sum_probs=84.0
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (365)
++.+.-.+..|.. +.|.||+|+||||++++|++ +..++.+.+.+++..+...|..+ ..+.+..++
T Consensus 22 l~~isl~i~~Ge~--~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~~~~~~------------r~ig~vfQ~ 86 (351)
T PRK11432 22 IDNLNLTIKQGTM--VTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFIDGEDVTHRSIQQ------------RDICMVFQS 86 (351)
T ss_pred EeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHH------------CCEEEEeCC
Confidence 3344444445554 89999999999999999999 67888888888886551111100 011111111
Q ss_pred cCccc------------------hhHHHHHHHHHHhc---------CCCCCCC------------CCCceEEEEeCC-CC
Q 017844 102 AGFQD------------------RYVVQEVIKEMAKN---------RPIDTKG------------KRGFKVLVLNEV-DK 141 (365)
Q Consensus 102 ~~~~~------------------~~~~~~~l~~~~~~---------~~~~~~~------------~~~~~vliiDE~-~~ 141 (365)
...+. .....+.+..+... .+..+|+ ..+++++++||+ ..
T Consensus 87 ~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 11111 01111111111111 1111121 237899999998 88
Q ss_pred CCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 142 LSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 142 L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
|+......+...|.+... +..+|++|++.+.. ..+.+|+.
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~-~~laD~i~ 208 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEA-FAVSDTVI 208 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEE
Confidence 999999888888876533 46778888776542 34556654
No 344
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.82 E-value=3.9e-09 Score=92.05 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=74.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch---hHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---YVVQEV 113 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 113 (365)
+.|.||+|+||||+++++++ +..+..+.+.+++... .... ....+ ....+..+.+.+.....+.... ....+.
T Consensus 51 ~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~-~~~~-~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (224)
T cd03220 51 IGLIGRNGAGKSTLLRLLAG-IYPPDSGTVTVRGRVS-SLLG-LGGGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDEI 126 (224)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEc-hhhc-ccccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 89999999999999999999 5567778777776432 1000 00000 0000000111100000000000 011111
Q ss_pred HHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCccc
Q 017844 114 IKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVT 174 (365)
Q Consensus 114 l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~ 174 (365)
++.+. ......+| ...+++++++||+ ..|+...+..+.+.+.+.... ..+|+++++.+. .
T Consensus 127 l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~-~ 205 (224)
T cd03220 127 IEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-I 205 (224)
T ss_pred HHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H
Confidence 11110 00000111 1247799999998 789999999999998876433 556666666543 3
Q ss_pred HHHhccceeE
Q 017844 175 EAIRSRCLNI 184 (365)
Q Consensus 175 ~~l~sR~~~i 184 (365)
..+.+|+.++
T Consensus 206 ~~~~d~i~~l 215 (224)
T cd03220 206 KRLCDRALVL 215 (224)
T ss_pred HHhCCEEEEE
Confidence 3444555433
No 345
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.6e-08 Score=92.65 Aligned_cols=49 Identities=27% Similarity=0.455 Sum_probs=41.8
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (365)
..|.|++||+.+++.+.-+..+|. |++++||||||||.+++.+.. ++.+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~-lLPp 224 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPG-LLPP 224 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcc-cCCC
Confidence 379999999999999988876663 499999999999999999987 4443
No 346
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.82 E-value=5.4e-09 Score=90.50 Aligned_cols=159 Identities=18% Similarity=0.260 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc-------eecCCCcceecccccccccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW-------KIDAGSRNIDLELTTLSSAN 93 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 93 (365)
+++.+.-.+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++... ...|........ ...+..+
T Consensus 14 ~l~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~-~~~tv~e 89 (213)
T cd03235 14 VLEDVSFEVKPGEF--LAIVGPNGAGKSTLLKAILG-LLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRD-FPISVRD 89 (213)
T ss_pred eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCccHHHHHhheEEeccccccccC-CCCcHHH
Confidence 34444444555555 99999999999999999999 5567778777776432 011111000000 0000001
Q ss_pred ceecCCCCc-C---cc---chhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844 94 HVELSPSDA-G---FQ---DRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH 148 (365)
Q Consensus 94 ~~~~~~~~~-~---~~---~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~ 148 (365)
.+.+..... . .. ....+.+.++.+. ......+| ...+++++++||+ ..|++....
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 169 (213)
T cd03235 90 VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQE 169 (213)
T ss_pred HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 111100000 0 00 0111222222211 11111111 1247899999998 889999999
Q ss_pred HHHHHHhhhc-CceeEEEEecCCCcccHHHhccceeE
Q 017844 149 SLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 149 ~Ll~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+.+.+.+.. .+..+|++|++.+. ...+.+|+.++
T Consensus 170 ~l~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l 205 (213)
T cd03235 170 DIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLL 205 (213)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEE
Confidence 9999998764 34567777776553 34444555433
No 347
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=6.1e-09 Score=91.42 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=40.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+... ...+|+++++...+ +.+.+|+..
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~-~~~~d~i~~ 203 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA-LTMSDRIAV 203 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhcCEEEE
Confidence 47899999998 78999999999999987653 45677777766543 445566543
No 348
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.81 E-value=1.6e-08 Score=88.65 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=76.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc-----ccccccceecCCCC--cCccc---
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT-----TLSSANHVELSPSD--AGFQD--- 106 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~--- 106 (365)
+.|.||+|+||||+++++++ +..+..+.+.+++..+ ........-+... ..+..+.+.+.... .....
T Consensus 14 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~-~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 91 (230)
T TIGR01184 14 ISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQI-TEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSER 91 (230)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEC-CCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 89999999999999999999 5577788888877544 1110000000000 00000011110000 00000
Q ss_pred hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEE
Q 017844 107 RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILC 166 (365)
Q Consensus 107 ~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~ 166 (365)
...+.+.++.+. ......+| ...+++++++||+ ..|+......+.+.|.+... +..+|++
T Consensus 92 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~ 171 (230)
T TIGR01184 92 RAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171 (230)
T ss_pred HHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 001222222211 01111111 1247899999998 78999999999999987532 4567777
Q ss_pred ecCCCcccHHHhccceeE
Q 017844 167 CNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 167 t~~~~~l~~~l~sR~~~i 184 (365)
|++.+. ...+.+|+.++
T Consensus 172 sH~~~~-~~~~~d~v~~l 188 (230)
T TIGR01184 172 THDVDE-ALLLSDRVVML 188 (230)
T ss_pred eCCHHH-HHHhcCEEEEE
Confidence 776553 34445555443
No 349
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=1.4e-08 Score=95.44 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=39.0
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|++.....+.+.|.+.. .+..+|++|++.+.+ ..+.+|+.
T Consensus 181 ~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~-~~~~Dri~ 236 (400)
T PRK10070 181 INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEA-MRIGDRIA 236 (400)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHH-HHhCCEEE
Confidence 47899999998 8899999999999887763 245677777776533 34455553
No 350
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.81 E-value=1.9e-08 Score=86.25 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc-eeccccccc---------
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELTTLS--------- 90 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~--------- 90 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... ...... ..+ ....
T Consensus 16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~-~~~~~~~~~i--~~~~q~~~~~~~~ 89 (200)
T PRK13540 16 LLQQISFHLPAGGL--LHLKGSNGAGKTTLLKLIAG-LLNPEKGEILFERQSIK-KDLCTYQKQL--CFVGHRSGINPYL 89 (200)
T ss_pred EEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeeEEECCCccc-cCHHHHHhhe--EEeccccccCcCC
Confidence 33444444445544 99999999999999999998 56777888887775441 000000 000 0000
Q ss_pred -cccceecCCCCcCccchhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHH
Q 017844 91 -SANHVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLR 151 (365)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll 151 (365)
..+.+.+... .. .....+.+.++.+.. .....+| ...+++++++||+ ..|+......+.
T Consensus 90 tv~~~~~~~~~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~ 167 (200)
T PRK13540 90 TLRENCLYDIH-FS-PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII 167 (200)
T ss_pred CHHHHHHHHHh-cC-cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 0000000000 00 000112223322110 0000111 1247899999998 889999999999
Q ss_pred HHHhhhc-CceeEEEEecCCC
Q 017844 152 RTMEKYS-ASCRLILCCNSSS 171 (365)
Q Consensus 152 ~~le~~~-~~~~~Il~t~~~~ 171 (365)
+.+.+.. ....+|++|++..
T Consensus 168 ~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 168 TKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHHcCCEEEEEeCCch
Confidence 9998753 3456777777655
No 351
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.81 E-value=7.5e-08 Score=88.13 Aligned_cols=137 Identities=20% Similarity=0.344 Sum_probs=78.0
Q ss_pred HHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844 21 IAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (365)
Q Consensus 21 ~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (365)
++...+.+++. ....+++|+||+|+|||+|+.++|+++.......+++....+ +...
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l---------------------~~~l 226 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL---------------------IEIL 226 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH---------------------HHHH
Confidence 44445555552 122459999999999999999999988654332222221111 1100
Q ss_pred CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC--CCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCc---
Q 017844 99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVD--KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSK--- 172 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~--~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~--- 172 (365)
... .........+.+..+ ...++|||||+. ..++..+..|+.+++.... +..+|++||....
T Consensus 227 ~~~-~~~~~~~~~~~~~~l-----------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 227 REI-RFNNDKELEEVYDLL-----------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELL 294 (329)
T ss_pred HHH-HhccchhHHHHHHHh-----------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 000 000000001111111 245899999994 4567778889999987543 4568888886542
Q ss_pred --ccHHHhccc----eeEEecCCC
Q 017844 173 --VTEAIRSRC----LNIRINSPT 190 (365)
Q Consensus 173 --l~~~l~sR~----~~i~~~~~~ 190 (365)
+.+.+.||+ .++.|...+
T Consensus 295 ~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 295 KTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred HHHhHHHHHHHHcCCEEEEecCcC
Confidence 445677775 467776544
No 352
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.81 E-value=1.9e-08 Score=87.14 Aligned_cols=146 Identities=18% Similarity=0.260 Sum_probs=76.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccccc------cccccceecCCCCcCc---cc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT------LSSANHVELSPSDAGF---QD 106 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~ 106 (365)
+.|.||+|+||||+++++++ +..+..+.+.+++......+. .....+.... .+..+.+.+....... ..
T Consensus 27 ~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~ 105 (213)
T TIGR01277 27 VAIMGPSGAGKSTLLNLIAG-FIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQ 105 (213)
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHH
Confidence 99999999999999999998 567777878777754310000 0000000000 0000001000000000 00
Q ss_pred hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEE
Q 017844 107 RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILC 166 (365)
Q Consensus 107 ~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~ 166 (365)
...+.+.++.+. ...+..+| ...+++++++||+ ..|+...+..+.+.|.+... +..+|++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~v 185 (213)
T TIGR01277 106 QEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV 185 (213)
T ss_pred HHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 111222222211 11111111 1247799999998 78999999999999988643 4567777
Q ss_pred ecCCCcccHHHhccceeE
Q 017844 167 CNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 167 t~~~~~l~~~l~sR~~~i 184 (365)
|++.+.+ ..+.+|+..+
T Consensus 186 sh~~~~~-~~~~d~v~~l 202 (213)
T TIGR01277 186 THHLSDA-RAIASQIAVV 202 (213)
T ss_pred eCCHHHH-HhhcCeEEEE
Confidence 7765532 3444555433
No 353
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=1.8e-08 Score=89.07 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=39.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|+.+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~-~~~~~d~i~~ 208 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE-AFRLADRIAI 208 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEE
Confidence 47799999998 78999999999999987642 4567777776553 3445566543
No 354
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.81 E-value=2.5e-08 Score=85.30 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=35.7
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhh-cCceeEEEEecCCCcc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNSSSKV 173 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~-~~~~~~Il~t~~~~~l 173 (365)
.+++++++||+ ..|+......+.+.+.+. ..+..+|+++++...+
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 144 SRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL 190 (198)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 47899999998 789999999999999875 3345688888876543
No 355
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.81 E-value=1.3e-08 Score=94.55 Aligned_cols=139 Identities=14% Similarity=0.210 Sum_probs=82.1
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (365)
.+..|.. +.|.||+|+||||++++|++ +..++.+.+.+++..+...|... ..+.+..++...+..
T Consensus 26 ~i~~Ge~--~~l~GpsGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~~~~~~~------------r~ig~v~Q~~~lfp~ 90 (353)
T TIGR03265 26 SVKKGEF--VCLLGPSGCGKTTLLRIIAG-LERQTAGTIYQGGRDITRLPPQK------------RDYGIVFQSYALFPN 90 (353)
T ss_pred EEcCCCE--EEEECCCCCCHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHH------------CCEEEEeCCcccCCC
Confidence 3344544 89999999999999999999 67888898888886551111100 111222222111111
Q ss_pred hH----------------------HHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHH
Q 017844 108 YV----------------------VQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQ 147 (365)
Q Consensus 108 ~~----------------------~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~ 147 (365)
.+ +.+.++.+. ...+..+| ...+++++++||+ ..|+....
T Consensus 91 ~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r 170 (353)
T TIGR03265 91 LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVR 170 (353)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 11 122222211 01111111 1237899999998 78999999
Q ss_pred HHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 148 ~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
..+.+.|.+... +..+|++|++.+.. ..+.+|+.
T Consensus 171 ~~l~~~L~~l~~~~~~tvi~vTHd~~ea-~~l~d~i~ 206 (353)
T TIGR03265 171 EHLRTEIRQLQRRLGVTTIMVTHDQEEA-LSMADRIV 206 (353)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEE
Confidence 988888877533 46788888776633 34556653
No 356
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=1.1e-08 Score=92.25 Aligned_cols=159 Identities=14% Similarity=0.239 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC---Ccceeccccc----c---c
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLELTT----L---S 90 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~----~---~ 90 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++..+...+. .....+.+.. + +
T Consensus 22 ~l~~vsl~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 22 ALKDVSFSVYEGEW--VAIVGHNGSGKSTLAKLLNG-LLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 44444445555655 89999999999999999998 567888888888865411000 0000000000 0 0
Q ss_pred cccceecCCCCcCccch---hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844 91 SANHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS 149 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~ 149 (365)
..+.+.+.....+.... ..+.+.++.+. ...+..+| ...+++++++||+ ..|++..+..
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 00001010000010000 01112221110 11111111 1247899999998 8899999999
Q ss_pred HHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
+.+.+.+... +..+|++|++.+.+ .. .+|+.++
T Consensus 179 l~~~l~~l~~~~~~tilivsH~~~~~-~~-~d~i~~l 213 (279)
T PRK13635 179 VLETVRQLKEQKGITVLSITHDLDEA-AQ-ADRVIVM 213 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHH-Hc-CCEEEEE
Confidence 9999987653 46777788776654 33 5665433
No 357
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.80 E-value=1.8e-08 Score=88.22 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
+++.+.-.+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++...
T Consensus 20 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~ 69 (228)
T cd03257 20 ALDDVSFSIKKGET--LGLVGESGSGKSTLARAILG-LLKPTSGSIIFDGKDL 69 (228)
T ss_pred eecCceeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEc
Confidence 44444445555655 99999999999999999999 5577788888777543
No 358
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.80 E-value=6.2e-09 Score=96.96 Aligned_cols=139 Identities=19% Similarity=0.306 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (365)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (365)
+.+++.+...+..|.. +-+.||+|+||||++|.+.+ ...+..+.+.+++.++. .+ ..-.-+.|+.|.
T Consensus 349 ~pil~~isF~l~~G~~--lgIIGPSgSGKSTLaR~lvG-~w~p~~G~VRLDga~l~--------qW--d~e~lG~hiGYL 415 (580)
T COG4618 349 KPILKGISFALQAGEA--LGIIGPSGSGKSTLARLLVG-IWPPTSGSVRLDGADLR--------QW--DREQLGRHIGYL 415 (580)
T ss_pred CcceecceeEecCCce--EEEECCCCccHHHHHHHHHc-ccccCCCcEEecchhhh--------cC--CHHHhccccCcC
Confidence 3455666666666665 89999999999999999998 66788899999887651 11 222336678888
Q ss_pred CCCcCccchhHHHHHHHHHHhc------------C---------CC-----------CCC------------CCCCceEE
Q 017844 99 PSDAGFQDRYVVQEVIKEMAKN------------R---------PI-----------DTK------------GKRGFKVL 134 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~------------~---------~~-----------~~~------------~~~~~~vl 134 (365)
|++....+. ++.+++..+... . |. .+| ..+++.++
T Consensus 416 PQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 416 PQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred cccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE
Confidence 887654442 344444333211 0 00 111 13578999
Q ss_pred EEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844 135 VLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS 171 (365)
Q Consensus 135 iiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~ 171 (365)
++||+ .+|+.+...+|...+.... ..+.+|++++.+.
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs 533 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 99999 6799988889999887654 4566777777765
No 359
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.8e-08 Score=88.96 Aligned_cols=54 Identities=9% Similarity=0.184 Sum_probs=39.7
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.|.+... +..+|++|++.+. ...+.+|+.+
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~ 217 (241)
T cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVG 217 (241)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 47899999998 88999999999999987642 4567777777654 3445556543
No 360
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.9e-08 Score=87.12 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+.+ ..+.+|+.+
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~-~~~~d~i~~ 204 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA-EYLADRIVV 204 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH-HHhcCEEEE
Confidence 47899999998 88999999999999987643 45677777665533 344455443
No 361
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.80 E-value=1.2e-07 Score=95.52 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=53.7
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhhc-------------CceeEEEEecCCC-------------cccHHHhccce-
Q 017844 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS-------------KVTEAIRSRCL- 182 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~-------------~~~~~Il~t~~~~-------------~l~~~l~sR~~- 182 (365)
...+++|||++.|+...+..|++.||+.. ..+.+|.++|... .+++++.|||.
T Consensus 557 dgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDL 636 (915)
T PTZ00111 557 NGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDL 636 (915)
T ss_pred CCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcE
Confidence 34699999999999999999999998642 3466777776531 47899999994
Q ss_pred -eEEecCCCHHHHHHHHHHHH
Q 017844 183 -NIRINSPTEEQIVKVLEFIA 202 (365)
Q Consensus 183 -~i~~~~~~~~~~~~iL~~~~ 202 (365)
.+-+..++.+.=..+..+++
T Consensus 637 If~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 637 IYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred EEEecCCCChHHHHHHHHHHH
Confidence 45667777666555544444
No 362
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.80 E-value=7.5e-09 Score=90.39 Aligned_cols=159 Identities=15% Similarity=0.246 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee-cCCC--cceeccccc-----cccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-DAGS--RNIDLELTT-----LSSA 92 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~-~~~~--~~~~~~~~~-----~~~~ 92 (365)
+++.+.-.+..|.. +.|.||+|+|||||++++++ +..+..|.+.+++..... .+.. ....+.+.. .+..
T Consensus 22 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 98 (225)
T PRK10247 22 ILNNISFSLRAGEF--KLITGPSGCGKSTLLKIVAS-LISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVY 98 (225)
T ss_pred eeeccEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHH
Confidence 44444444445544 89999999999999999999 567777877777643310 0000 000000000 0000
Q ss_pred cceecCCCCcCcc-chhHHHHHHHHHHh------cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844 93 NHVELSPSDAGFQ-DRYVVQEVIKEMAK------NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR 152 (365)
Q Consensus 93 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~------~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~ 152 (365)
+.+.+...-.... ....+.+.++.+.- .....+| ...+++++++||+ ..|++.....+.+
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (225)
T PRK10247 99 DNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178 (225)
T ss_pred HHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0000000000000 01112223322211 0010111 1247899999998 8899999999999
Q ss_pred HHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 153 ~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+.+... +..+|+++++.+.+ + ..+|+..+
T Consensus 179 ~l~~~~~~~~~tvii~sh~~~~~-~-~~d~i~~l 210 (225)
T PRK10247 179 IIHRYVREQNIAVLWVTHDKDEI-N-HADKVITL 210 (225)
T ss_pred HHHHHHHhcCCEEEEEECChHHH-H-hCCEEEEE
Confidence 9987632 45678888776644 3 34554444
No 363
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.80 E-value=1.7e-08 Score=90.56 Aligned_cols=53 Identities=8% Similarity=0.105 Sum_probs=38.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+.+ ..+.+|+.
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~-~~~~d~v~ 215 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEV-LSIADHAY 215 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH-HHhhCEEE
Confidence 46789999998 88999999999999987643 45677777765433 34445553
No 364
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=1.6e-08 Score=88.74 Aligned_cols=150 Identities=17% Similarity=0.309 Sum_probs=79.8
Q ss_pred HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceeccccc------cccccceecCCCC
Q 017844 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTT------LSSANHVELSPSD 101 (365)
Q Consensus 29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~ 101 (365)
+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++......+ ......+.... .+..+.+.+....
T Consensus 22 i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 98 (232)
T PRK10771 22 VERGER--VAILGPSGAGKSTLLNLIAG-FLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNP 98 (232)
T ss_pred EcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccc
Confidence 334444 99999999999999999998 55777788877775431100 00000100000 0000001110000
Q ss_pred -cCcc--chhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-
Q 017844 102 -AGFQ--DRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA- 159 (365)
Q Consensus 102 -~~~~--~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~- 159 (365)
.... ....+.+.++.+. ...+..+| ...+++++++||+ ..|+...+..+.+.+.+...
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~ 178 (232)
T PRK10771 99 GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE 178 (232)
T ss_pred ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0000 0111222232221 11111111 1347899999998 78999999999999987632
Q ss_pred -ceeEEEEecCCCcccHHHhccce
Q 017844 160 -SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 160 -~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
+..+|++|++.+.+ ..+.+|+.
T Consensus 179 ~~~tiii~sH~~~~~-~~~~d~i~ 201 (232)
T PRK10771 179 RQLTLLMVSHSLEDA-ARIAPRSL 201 (232)
T ss_pred cCCEEEEEECCHHHH-HHhCCEEE
Confidence 45677777776633 44556654
No 365
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.79 E-value=1.6e-08 Score=94.22 Aligned_cols=147 Identities=13% Similarity=0.210 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC--ccceeccccceecCCCcceeccccccccccceecCC
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (365)
++.+.-.+..|.. +.|.||+|+||||++++|++ +..++. +.+.+++..+...|... ..+.+..
T Consensus 21 l~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaG-l~~p~~~~G~i~~~g~~~~~~~~~~------------r~ig~vf 85 (362)
T TIGR03258 21 LDDLSLEIEAGEL--LALIGKSGCGKTTLLRAIAG-FVKAAGLTGRIAIADRDLTHAPPHK------------RGLALLF 85 (362)
T ss_pred EeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCCCEEEEECCEECCCCCHHH------------CCEEEEE
Confidence 3333334445554 89999999999999999999 667888 88888876541111000 0111111
Q ss_pred CCcCccchh----------------------HHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-
Q 017844 100 SDAGFQDRY----------------------VVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV- 139 (365)
Q Consensus 100 ~~~~~~~~~----------------------~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~- 139 (365)
++...+... .+.+.++.+. ...+..+| ...+++++++||+
T Consensus 86 Q~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred CCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 111111111 1112222211 00111111 1247899999998
Q ss_pred CCCCHHHHHHHHHHHhhhcC---ceeEEEEecCCCcccHHHhccceeE
Q 017844 140 DKLSREAQHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 140 ~~L~~~~~~~Ll~~le~~~~---~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
..|+......+.+.|.+... +..+|++|++.+.. ..+.+|..++
T Consensus 166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea-~~l~dri~vl 212 (362)
T TIGR03258 166 SALDANIRANMREEIAALHEELPELTILCVTHDQDDA-LTLADKAGIM 212 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 88999999999998887643 45677788776543 4555666443
No 366
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=1.8e-08 Score=90.49 Aligned_cols=158 Identities=13% Similarity=0.265 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC---Ccceeccccc-------cc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLELTT-------LS 90 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~-------~~ 90 (365)
+++.+.-.+..|.. +.|.||+|+|||||++++++ +..+..|.+.+++......+. .....+.... .+
T Consensus 24 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 24 ALKNVSFEINEGEY--VAILGHNGSGKSTISKILTG-LLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 34444444445554 89999999999999999999 557777888887754411000 0000000000 00
Q ss_pred cccceecCCCCcCccchh---HHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844 91 SANHVELSPSDAGFQDRY---VVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS 149 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~---~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~ 149 (365)
..+.+.+.....+..... .+.+.++.+. ...+..+| ...+++++++||+ ..|+..+...
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~ 180 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 000000000000000000 0112222211 00111111 1247899999998 8899999999
Q ss_pred HHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+.+.+.+... +..+|++|++.+.+ . ..+|+.+
T Consensus 181 l~~~l~~~~~~~~~tiii~sH~~~~~-~-~~d~v~~ 214 (271)
T PRK13632 181 IKKIMVDLRKTRKKTLISITHDMDEA-I-LADKVIV 214 (271)
T ss_pred HHHHHHHHHHhcCcEEEEEEechhHH-h-hCCEEEE
Confidence 9999987643 35777888877654 3 4566543
No 367
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.79 E-value=3.5e-08 Score=85.82 Aligned_cols=155 Identities=18% Similarity=0.304 Sum_probs=89.3
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce----------------ecCCCcceec
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK----------------IDAGSRNIDL 84 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~----------------~~~~~~~~~~ 84 (365)
+++.+...+..|.. +++.|++|+||||+++.+++ +..+..+.+.+++..+. ++|+..-..-
T Consensus 19 ~l~~v~~~i~~Ge~--~~i~G~nGsGKSTL~~~l~G-Ll~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 19 ALKDVSLEIEKGER--VLLIGPNGSGKSTLLKLLNG-LLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred eeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHcC-cCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 33444444555555 99999999999999999998 77888888877775431 1111110000
Q ss_pred cccccccccceecCCCCcCccchhHHHHHHHHHH---------hcCCCCCCCC------------CCceEEEEeCC-CCC
Q 017844 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA---------KNRPIDTKGK------------RGFKVLVLNEV-DKL 142 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~------------~~~~vliiDE~-~~L 142 (365)
+..+.+.+.+...+.... .+.+...... ...+..+|+. -+++++++||+ -.|
T Consensus 96 -----tV~~evafg~~n~g~~~~-e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~L 169 (235)
T COG1122 96 -----TVEDEVAFGLENLGLPRE-EIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL 169 (235)
T ss_pred -----cHHHHHhhchhhcCCCHH-HHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCC
Confidence 000011122222222221 1222222211 1222233322 26789999998 789
Q ss_pred CHHHHHHHHHHHhhhcCc--eeEEEEecCCCcccHHHhccceeEE
Q 017844 143 SREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNIR 185 (365)
Q Consensus 143 ~~~~~~~Ll~~le~~~~~--~~~Il~t~~~~~l~~~l~sR~~~i~ 185 (365)
++.....+++.+.+.... ..+|++|++.+. .....+|+.++.
T Consensus 170 D~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~-~~~~ad~v~vl~ 213 (235)
T COG1122 170 DPKGRRELLELLKKLKEEGGKTIIIVTHDLEL-VLEYADRVVVLD 213 (235)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH-HHhhCCEEEEEE
Confidence 999999999999987654 467777776554 345567765444
No 368
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.78 E-value=2.7e-08 Score=87.01 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|+......+.+.|.+......+|++|++.+ ....+.+|+.
T Consensus 158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~ 211 (227)
T cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ-QAARVADRTA 211 (227)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHH-HHHHhCCEEE
Confidence 37899999998 78999999999999988755555666666654 3344555553
No 369
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=9.9e-09 Score=92.25 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceeccccccccc-c---
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTTLSSA-N--- 93 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~-~--- 93 (365)
+++.+.-.+..|.. +.|.||+|+|||||++++++ +..+..|.+.+++..+....... ...+ ...... .
T Consensus 16 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~i--~~v~q~~~~~~ 90 (271)
T PRK13638 16 VLKGLNLDFSLSPV--TGLVGANGCGKSTLFMNLSG-LLRPQKGAVLWQGKPLDYSKRGLLALRQQV--ATVFQDPEQQI 90 (271)
T ss_pred cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHcC-CCCCCccEEEECCEEcccccCCHHHHHhhe--EEEeeChhhcc
Confidence 44444444555555 99999999999999999998 56777888887775431000000 0000 000000 0
Q ss_pred -------ceecCCCCcCccch---hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CCCCHH
Q 017844 94 -------HVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSRE 145 (365)
Q Consensus 94 -------~~~~~~~~~~~~~~---~~~~~~l~~~~-----~~~~~~~~~------------~~~~~vliiDE~-~~L~~~ 145 (365)
.+.+.....+.... ..+.+.++.+. ......+|+ ..+++++++||+ ..|+..
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~ 170 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPA 170 (271)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 00000000000000 01112222211 111111121 247899999998 789999
Q ss_pred HHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 146 ~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
....+.+.|.+... +..+|+++++.+. ...+.+|+.++
T Consensus 171 ~~~~l~~~l~~~~~~g~tii~vtH~~~~-~~~~~d~i~~l 209 (271)
T PRK13638 171 GRTQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVL 209 (271)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 99999999987643 4566677766553 34555665433
No 370
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.78 E-value=2.1e-08 Score=93.43 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=77.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccc----------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD---------- 106 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 106 (365)
+.|.||+|+||||+++++++ +..++.+.+.+++..+...+...... .....+.+.+++.....
T Consensus 26 ~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~i~~~~~~~~~~------~~~~~i~~v~q~~~l~~~~tv~enl~~ 98 (354)
T TIGR02142 26 TAIFGRSGSGKTTLIRLIAG-LTRPDEGEIVLNGRTLFDSRKGIFLP------PEKRRIGYVFQEARLFPHLSVRGNLRY 98 (354)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECccCccccccc------hhhCCeEEEecCCccCCCCcHHHHHHH
Confidence 89999999999999999999 56777888888776541110000000 00000111111111000
Q ss_pred ----------hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc
Q 017844 107 ----------RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (365)
Q Consensus 107 ----------~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~ 158 (365)
...+.+.++.+.- ..+..+| ...+++++++||+ ..|+......+.+.|.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~ 178 (354)
T TIGR02142 99 GMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLH 178 (354)
T ss_pred HhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 0012222222111 0111112 1237899999998 8899999999999998764
Q ss_pred C--ceeEEEEecCCCcccHHHhccce
Q 017844 159 A--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 159 ~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
. +..+|++|++.+.+ ..+.+|+.
T Consensus 179 ~~~g~tiiivtH~~~~~-~~~~d~i~ 203 (354)
T TIGR02142 179 AEFGIPILYVSHSLQEV-LRLADRVV 203 (354)
T ss_pred HhcCCEEEEEecCHHHH-HHhCCEEE
Confidence 3 45677777776533 34455654
No 371
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=2e-08 Score=90.38 Aligned_cols=159 Identities=15% Similarity=0.236 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC----cceeccccc----c---
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT----L--- 89 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~----~--- 89 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++......+.. ....+.... +
T Consensus 17 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 17 ALENINLVIKKGEY--IGIIGKNGSGKSTLALHLNG-LLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 34444444555555 99999999999999999999 5677888888887544110000 000000000 0
Q ss_pred ccccceecCCCCcCccc---hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844 90 SSANHVELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH 148 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~ 148 (365)
+..+.+.+.....+... ...+.+.++.+. ...+..+| ...+++++++||+ ..|++..+.
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~ 173 (274)
T PRK13644 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173 (274)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 00000000000000000 001112222111 01111111 1247899999998 889999999
Q ss_pred HHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 149 ~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++.+.+... +..+|++|++.+.+ + ..+|+.++
T Consensus 174 ~l~~~l~~l~~~g~til~~tH~~~~~-~-~~d~v~~l 208 (274)
T PRK13644 174 AVLERIKKLHEKGKTIVYITHNLEEL-H-DADRIIVM 208 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHH-h-hCCEEEEE
Confidence 99999987643 56777777777654 3 35665443
No 372
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.78 E-value=1.5e-08 Score=95.26 Aligned_cols=159 Identities=17% Similarity=0.168 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-C--Ccceeccccc------ccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-G--SRNIDLELTT------LSS 91 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~--~~~~~~~~~~------~~~ 91 (365)
+++.+...+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+ . .+...+.... .+.
T Consensus 18 vL~~vs~~i~~Gei--v~liGpNGaGKSTLLk~LaG-ll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv 94 (402)
T PRK09536 18 VLDGVDLSVREGSL--VGLVGPNGAGKTTLLRAING-TLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDV 94 (402)
T ss_pred EEEeeEEEECCCCE--EEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCH
Confidence 34444444455555 89999999999999999999 56788888888875431100 0 0000000000 000
Q ss_pred ccceecCCC----CcC---ccchhHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844 92 ANHVELSPS----DAG---FQDRYVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREA 146 (365)
Q Consensus 92 ~~~~~~~~~----~~~---~~~~~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~ 146 (365)
.+.+.+... ... ..+...+.+.++.+... ....+| ...+++++++||+ ..|+...
T Consensus 95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~ 174 (402)
T PRK09536 95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH 174 (402)
T ss_pred HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 000111000 000 00111122222221110 000111 1247899999998 8899999
Q ss_pred HHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 147 ~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+..++++|.+... +..+|+++++.+ ....+.+|+..
T Consensus 175 ~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~ 211 (402)
T PRK09536 175 QVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVL 211 (402)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999887653 445555555544 44556677643
No 373
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.77 E-value=2e-08 Score=93.90 Aligned_cols=154 Identities=14% Similarity=0.250 Sum_probs=83.4
Q ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceecccccc------cccccee
Q 017844 24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTTL------SSANHVE 96 (365)
Q Consensus 24 ~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~ 96 (365)
.+...+..|.. +.|.||+|+||||++++|++ +..++.+.+.+++..+...|. .....+.+... +..+.+.
T Consensus 32 ~vsl~i~~Ge~--~~LlGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~ 108 (375)
T PRK09452 32 NLDLTINNGEF--LTLLGPSGCGKTTVLRLIAG-FETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVA 108 (375)
T ss_pred eeEEEEeCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHH
Confidence 33334444554 89999999999999999999 667888888888866521111 11111100000 0000000
Q ss_pred cCCCCcCccchhHHHHHHHHHHhc---------CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHH
Q 017844 97 LSPSDAGFQDRYVVQEVIKEMAKN---------RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTM 154 (365)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~l 154 (365)
+.....+. .....++.+..+... .+..+| ...+++++++||+ ..|+......+.+.|
T Consensus 109 ~~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 187 (375)
T PRK09452 109 FGLRMQKT-PAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL 187 (375)
T ss_pred HHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 00000000 101111111111111 111112 1247899999998 789999999999988
Q ss_pred hhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 155 EKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 155 e~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+... +..+|++|++.... ..+.+|+.
T Consensus 188 ~~l~~~~g~tiI~vTHd~~ea-~~laDri~ 216 (375)
T PRK09452 188 KALQRKLGITFVFVTHDQEEA-LTMSDRIV 216 (375)
T ss_pred HHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence 87643 56788888876542 34456653
No 374
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.77 E-value=5.5e-09 Score=92.90 Aligned_cols=155 Identities=18% Similarity=0.218 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc------ccccc
Q 017844 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSAN 93 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 93 (365)
.+++.+...+..|.. +.|.||+|+|||||++.|++ +..++.+.+.+++... ... .....+.... .+..+
T Consensus 26 ~il~~isl~i~~Ge~--~~I~G~NGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~-~~~-~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQF--VAVVGRSGCGKSTLLRLLAG-LETPSAGELLAGTAPL-AEA-REDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEH-HHh-hCceEEEecCccCCCCCcHHH
Confidence 344444444455555 99999999999999999999 5566777776655322 000 0000000000 00000
Q ss_pred ceecCCCCcCccchhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHh
Q 017844 94 HVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (365)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le 155 (365)
.+.+... . .....+.+.++.+.- ..+..+| ...+++++++||+ ..|+......+.+.|.
T Consensus 101 nl~~~~~--~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 177 (257)
T PRK11247 101 NVGLGLK--G-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE 177 (257)
T ss_pred HHHhccc--c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0000000 0 001112222222111 0111111 1236799999998 8899999999999988
Q ss_pred hhc--CceeEEEEecCCCcccHHHhcccee
Q 017844 156 KYS--ASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 156 ~~~--~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+.. .+..+|++|++.+. ...+.+|+..
T Consensus 178 ~~~~~~~~tviivsHd~~~-~~~~~d~i~~ 206 (257)
T PRK11247 178 SLWQQHGFTVLLVTHDVSE-AVAMADRVLL 206 (257)
T ss_pred HHHHHcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 752 24567777777653 3445566543
No 375
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.77 E-value=2.9e-08 Score=84.64 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=43.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc---CceeEEEEecCCCcccHHHhccc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS---ASCRLILCCNSSSKVTEAIRSRC 181 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~---~~~~~Il~t~~~~~l~~~l~sR~ 181 (365)
.++.++|+||+ ..|+..+.+.|++.+++.. ....++++|++.+.+++-+-.+.
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 47889999997 8999999999999998753 35679999999998887664443
No 376
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.77 E-value=1.7e-08 Score=93.94 Aligned_cols=139 Identities=14% Similarity=0.212 Sum_probs=78.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh--------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-------- 108 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 108 (365)
+.|.||+|+||||++++|++ +..++.+.+.+++..+....... .. ......+.+..++.......
T Consensus 27 ~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~~~~~~~~~--~~----~~~~~~i~~v~q~~~l~~~~tv~enl~~ 99 (352)
T PRK11144 27 TAIFGRSGAGKTSLINAISG-LTRPQKGRIVLNGRVLFDAEKGI--CL----PPEKRRIGYVFQDARLFPHYKVRGNLRY 99 (352)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccccccc--cc----chhhCCEEEEcCCcccCCCCcHHHHHHh
Confidence 89999999999999999999 56777888888775541000000 00 00001122222221111111
Q ss_pred --------HHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--c
Q 017844 109 --------VVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--S 160 (365)
Q Consensus 109 --------~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~ 160 (365)
.+.+.++.+.- ..+..+| ...+++++++||+ ..|+......+.+.|.+... +
T Consensus 100 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g 179 (352)
T PRK11144 100 GMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN 179 (352)
T ss_pred hhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 12222222110 0111111 1247899999998 78999999999988887643 4
Q ss_pred eeEEEEecCCCcccHHHhcccee
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
..+|++|++.+.+ ..+.+|+.+
T Consensus 180 ~tii~vTHd~~~~-~~~~d~i~~ 201 (352)
T PRK11144 180 IPILYVSHSLDEI-LRLADRVVV 201 (352)
T ss_pred CeEEEEecCHHHH-HHhCCEEEE
Confidence 5678888776533 345556543
No 377
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.76 E-value=6.7e-09 Score=103.82 Aligned_cols=139 Identities=20% Similarity=0.315 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCC
Q 017844 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (365)
.+++.+.-.++.|+. +.+.|++||||||++|.+.+ ++.|..|.+.+++.+.+ .- ....-.+.+.+++
T Consensus 487 ~vL~~isL~I~~Ge~--vaIvG~SGsGKSTL~KLL~g-ly~p~~G~I~~dg~dl~-~i---------~~~~lR~~ig~V~ 553 (709)
T COG2274 487 PVLEDLSLEIPPGEK--VAIVGRSGSGKSTLLKLLLG-LYKPQQGRILLDGVDLN-DI---------DLASLRRQVGYVL 553 (709)
T ss_pred chhhceeEEeCCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEeHH-hc---------CHHHHHhheeEEc
Confidence 567777667777766 99999999999999999999 88999999999987651 00 0001111233333
Q ss_pred CCcCccchhHHH-------------HHHHH--------HHhcCCC-----------CCCC------------CCCceEEE
Q 017844 100 SDAGFQDRYVVQ-------------EVIKE--------MAKNRPI-----------DTKG------------KRGFKVLV 135 (365)
Q Consensus 100 ~~~~~~~~~~~~-------------~~l~~--------~~~~~~~-----------~~~~------------~~~~~vli 135 (365)
++.....+ +++ +++.. +....|. .+|+ -.+++|++
T Consensus 554 Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILl 632 (709)
T COG2274 554 QDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILL 632 (709)
T ss_pred ccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEE
Confidence 33211110 111 11111 1111111 1121 24789999
Q ss_pred EeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 136 LNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 136 iDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
+||+ ..|+++....+.+.|.+...+..+|++|++...
T Consensus 633 LDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~t 670 (709)
T COG2274 633 LDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLST 670 (709)
T ss_pred EeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchH
Confidence 9999 889999999999999998888889999998763
No 378
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=2e-08 Score=88.27 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=41.4
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+......+|++|++.+.+ +. .+|+..+
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~v~~l 209 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTI-EN-ADRIVVL 209 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-hh-CCEEEEe
Confidence 47889999998 8899999999999998876566788888777654 33 5565443
No 379
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.76 E-value=2.3e-08 Score=88.32 Aligned_cols=55 Identities=11% Similarity=0.223 Sum_probs=41.4
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+...+..+.+.+.+......+|++|++.+ ..+.+.+|+.++
T Consensus 160 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 215 (242)
T TIGR03411 160 QDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDME-FVRSIADKVTVL 215 (242)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 47899999998 78999999999999988765566777777655 344555666433
No 380
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.76 E-value=2.4e-08 Score=89.10 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=40.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+ ..+.+.+|+.++
T Consensus 169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l 225 (257)
T PRK10619 169 MEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL 225 (257)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 37889999998 78999999999999887643 456666666654 345566676544
No 381
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.76 E-value=3.3e-08 Score=79.19 Aligned_cols=46 Identities=22% Similarity=0.398 Sum_probs=37.6
Q ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 25 l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
+...+..|.. +.++||+||||||+.+.+|. +..++.+.+.+.|..+
T Consensus 22 isl~v~~Ge~--iaitGPSG~GKStllk~va~-Lisp~~G~l~f~Ge~v 67 (223)
T COG4619 22 ISLSVRAGEF--IAITGPSGCGKSTLLKIVAS-LISPTSGTLLFEGEDV 67 (223)
T ss_pred eeeeecCCce--EEEeCCCCccHHHHHHHHHh-ccCCCCceEEEcCccc
Confidence 3334445555 89999999999999999998 7889999999888766
No 382
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=1.4e-08 Score=90.28 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=40.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+...+..+|+++++.+. ...+.+|+..+
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~-~~~~~d~i~~l 218 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQ-AARISDYVAFL 218 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEE
Confidence 47899999998 789999999999999887555667777776553 34455665443
No 383
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.75 E-value=2.9e-08 Score=88.31 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=40.4
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+.+ ..+.+|+.++
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~-~~~~d~i~~l 220 (252)
T TIGR03005 163 MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA-REFADRVCFF 220 (252)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH-HHhcCEEEEE
Confidence 47899999998 78999999999999987643 46677777776533 4455665433
No 384
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=2.7e-08 Score=89.53 Aligned_cols=158 Identities=19% Similarity=0.309 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceeccccc-------cc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTT-------LS 90 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~-------~~ 90 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..+...+.. ....+.+.. .+
T Consensus 20 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 20 ALKGLSLSIPEGSK--TALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred eeeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence 44444444555655 99999999999999999998 5677888888877544100000 000000000 00
Q ss_pred cccceecCCCCcCccch---hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844 91 SANHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS 149 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~ 149 (365)
..+.+.+.....+.... ..+.+.++.+. ...+..+| ...+++++++||+ ..|+......
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 176 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 00000000000000000 01122222111 00111111 1247899999998 7899999999
Q ss_pred HHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844 150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 150 Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
+++.+.+... +..+|++|++.+. ...+.+|+.
T Consensus 177 l~~~l~~~~~~g~tili~tH~~~~-~~~~~d~i~ 209 (274)
T PRK13647 177 LMEILDRLHNQGKTVIVATHDVDL-AAEWADQVI 209 (274)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEE
Confidence 9999987643 4567777776553 344566654
No 385
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.74 E-value=1.2e-09 Score=89.97 Aligned_cols=161 Identities=15% Similarity=0.228 Sum_probs=102.6
Q ss_pred CccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc
Q 017844 13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (365)
.+-++...+++.+.-.+.+|.. +.+.||+|.||||.-..+.+ +..++.+.+.+++.++..-|-... +.
T Consensus 11 ~K~y~kr~Vv~~Vsl~v~~GEi--VGLLGPNGAGKTT~Fymi~G-lv~~d~G~i~ld~~diT~lPm~~R---------Ar 78 (243)
T COG1137 11 AKSYKKRKVVNDVSLEVNSGEI--VGLLGPNGAGKTTTFYMIVG-LVRPDSGKILLDDEDITKLPMHKR---------AR 78 (243)
T ss_pred hHhhCCeeeeeeeeEEEcCCcE--EEEECCCCCCceeEEEEEEE-EEecCCceEEECCcccccCChHHH---------hh
Confidence 3334445555555555666766 89999999999999988887 778899999888876633332221 11
Q ss_pred cceecCCCCcCccchhHHHHHHHHHHhc-----------------------------CCCCCCC------------CCCc
Q 017844 93 NHVELSPSDAGFQDRYVVQEVIKEMAKN-----------------------------RPIDTKG------------KRGF 131 (365)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------------~~~~~~~------------~~~~ 131 (365)
--+.|.+++...+.+.++++.+..+.+. ...++|+ ..+|
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 1245566665555444444443322111 1112222 2378
Q ss_pred eEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEE
Q 017844 132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (365)
Q Consensus 132 ~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~ 185 (365)
+.+++||+ -.+++-+...+.+++........=|++|.+.-+-.-.+.+|+.++.
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~ 213 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIIS 213 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEe
Confidence 89999997 7788888877888887776677777777766543345677876544
No 386
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.74 E-value=1.6e-08 Score=90.70 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc-ceecccccccccc------
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLSSAN------ 93 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~------ 93 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+... ...+ .......
T Consensus 28 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i--~~v~q~~~~~~~~ 102 (267)
T PRK15112 28 AVKPLSFTLREGQT--LAIIGENGSGKSTLAKMLAG-MIEPTSGELLIDDHPLHFGDYSYRSQRI--RMIFQDPSTSLNP 102 (267)
T ss_pred eeeeeeEEecCCCE--EEEEcCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCchhhHhccE--EEEecCchhhcCc
Confidence 44555445555655 99999999999999999999 56777888877765431000000 0000 0000000
Q ss_pred ------ceecCCC-CcCccc---hhHHHHHHHHHHh------cCCCCCC------------CCCCceEEEEeCC-CCCCH
Q 017844 94 ------HVELSPS-DAGFQD---RYVVQEVIKEMAK------NRPIDTK------------GKRGFKVLVLNEV-DKLSR 144 (365)
Q Consensus 94 ------~~~~~~~-~~~~~~---~~~~~~~l~~~~~------~~~~~~~------------~~~~~~vliiDE~-~~L~~ 144 (365)
.+.+... ...... ...+.+.++.+.- .....+| ...+++++++||+ ..|++
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 182 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDM 182 (267)
T ss_pred chhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCH
Confidence 0000000 000000 0012222222211 0001111 1237899999998 78999
Q ss_pred HHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 145 ~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.....+.+.|.+... +..+|++|++.+. ...+.+|+.++
T Consensus 183 ~~~~~l~~~l~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l 223 (267)
T PRK15112 183 SMRSQLINLMLELQEKQGISYIYVTQHLGM-MKHISDQVLVM 223 (267)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhcCEEEEE
Confidence 999999999987642 4567777776553 34455665443
No 387
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=2.4e-08 Score=90.12 Aligned_cols=159 Identities=16% Similarity=0.242 Sum_probs=85.2
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceeccccc-------cc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTT-------LS 90 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~-------~~ 90 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++......+.. ....+.+.. .+
T Consensus 22 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 22 TLNDVSFHVKQGEW--LSIIGHNGSGKSTTVRLIDG-LLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence 33444334445554 99999999999999999998 5678888888877544100000 000000000 00
Q ss_pred cccceecCCCCcCccch---hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844 91 SANHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS 149 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~ 149 (365)
..+.+.+.....+.... ..+.+.++.+. ...+..+| ...+++++++||+ ..|+......
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 178 (279)
T PRK13650 99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178 (279)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 00001110000011100 01122222211 11111122 1247899999998 8899999999
Q ss_pred HHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
+.+.+.+... +..+|++|++.+.+ . ..+|+.++
T Consensus 179 l~~~l~~l~~~~g~tilivtH~~~~~-~-~~dri~~l 213 (279)
T PRK13650 179 LIKTIKGIRDDYQMTVISITHDLDEV-A-LSDRVLVM 213 (279)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence 9999987643 56788888877654 3 46666443
No 388
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.74 E-value=3.4e-08 Score=86.21 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=37.0
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSR 180 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR 180 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++ ......+.+|
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~-~~~~~~~~d~ 218 (224)
T TIGR02324 166 ADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD-EEVRELVADR 218 (224)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcce
Confidence 36789999998 88999999999999987643 4567777766 3333334444
No 389
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=3.1e-08 Score=87.46 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceecccccccc-c------
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTTLSS-A------ 92 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~-~------ 92 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+ ......+ ..... .
T Consensus 18 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~i--~~~~q~~~~~~~t 92 (241)
T PRK14250 18 ILKDISVKFEGGAI--YTIVGPSGAGKSTLIKLINR-LIDPTEGSILIDGVDIKTIDVIDLRRKI--GMVFQQPHLFEGT 92 (241)
T ss_pred eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEhhhcChHHhhhcE--EEEecCchhchhh
Confidence 34444444445544 89999999999999999999 55778888887775431100 0000000 00000 0
Q ss_pred --cceecCCCCcCccchhHHHHHHHHHHh------cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHH
Q 017844 93 --NHVELSPSDAGFQDRYVVQEVIKEMAK------NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLR 151 (365)
Q Consensus 93 --~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll 151 (365)
+.+.+... ........+.+.++.+.- ..+..+| ...+++++++||+ ..|+......+.
T Consensus 93 v~e~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 171 (241)
T PRK14250 93 VKDNIEYGPM-LKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171 (241)
T ss_pred HHHHHhcchh-hcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 00000000 000001112223322211 1111111 1247899999998 789999999999
Q ss_pred HHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 152 ~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
+.+.+... +..+|++|++.+. ...+.+|+.++
T Consensus 172 ~~l~~~~~~~g~tii~~sH~~~~-~~~~~d~i~~l 205 (241)
T PRK14250 172 ELIVKLKNKMNLTVIWITHNMEQ-AKRIGDYTAFL 205 (241)
T ss_pred HHHHHHHHhCCCEEEEEeccHHH-HHHhCCEEEEE
Confidence 98887642 4567777776653 34555666443
No 390
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.74 E-value=3.9e-08 Score=85.59 Aligned_cols=54 Identities=13% Similarity=0.346 Sum_probs=39.9
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+...+..+.+.+.+... +..+|+++++.+ + ..+.+++.++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~-~~~~d~v~~l 214 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-I-LDVADRIVHM 214 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-H-HhhCCEEEEE
Confidence 47899999998 78999999999999987643 567778887764 3 2455554433
No 391
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=3.1e-08 Score=92.78 Aligned_cols=151 Identities=13% Similarity=0.196 Sum_probs=79.6
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceecccccc------ccccceecCCC
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTTL------SSANHVELSPS 100 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~ 100 (365)
.+..|.. +.|.||+|+||||++++|++ +..++.+.+.+++..+...| ..+...+.+... +..+.+.+...
T Consensus 41 ~i~~Ge~--~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 117 (377)
T PRK11607 41 TIYKGEI--FALLGASGCGKSTLLRMLAG-FEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLK 117 (377)
T ss_pred EEcCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 3444544 89999999999999999998 67888888888876541111 111111100000 00000111000
Q ss_pred CcCccchhHHHHHHHHHHhcCCC---------CCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc
Q 017844 101 DAGFQDRYVVQEVIKEMAKNRPI---------DTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (365)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~---------~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~ 158 (365)
..+ ......++.+..+.....+ .+| ...+++++++||+ ..|+......+...+.+..
T Consensus 118 ~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 196 (377)
T PRK11607 118 QDK-LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196 (377)
T ss_pred HcC-CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 000 0111111111111111111 111 1247899999998 7899988887776665542
Q ss_pred --CceeEEEEecCCCcccHHHhcccee
Q 017844 159 --ASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 159 --~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+..+|++|++.+.. ..+-+|+.+
T Consensus 197 ~~~g~tii~vTHd~~ea-~~laDri~v 222 (377)
T PRK11607 197 ERVGVTCVMVTHDQEEA-MTMAGRIAI 222 (377)
T ss_pred HhcCCEEEEEcCCHHHH-HHhCCEEEE
Confidence 246788888776632 345566543
No 392
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.74 E-value=3.7e-08 Score=91.54 Aligned_cols=152 Identities=13% Similarity=0.219 Sum_probs=82.6
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec-CCCcceeccccc------cccccceecCCC
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID-AGSRNIDLELTT------LSSANHVELSPS 100 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~ 100 (365)
.+..|.. +.|.||+|+|||||+++|++ +..++.+.+.+++...... +..+...+.+.. .+..+.+.+...
T Consensus 24 ~i~~Ge~--~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~ 100 (353)
T PRK10851 24 DIPSGQM--VALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLT 100 (353)
T ss_pred EEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhh
Confidence 3445554 89999999999999999999 6678888888887654111 111111110000 000000111100
Q ss_pred Cc---Cccch----hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHh
Q 017844 101 DA---GFQDR----YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (365)
Q Consensus 101 ~~---~~~~~----~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le 155 (365)
.. ..... ..+.+.++.+.- ..+..+| ...+++++++||+ ..|+......+.+.|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~ 180 (353)
T PRK10851 101 VLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR 180 (353)
T ss_pred hcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 00 00010 112222222211 1111111 1247899999998 8899999999999998
Q ss_pred hhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 156 KYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 156 ~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+... +..+|++|++.... ..+.+|+.+
T Consensus 181 ~l~~~~g~tii~vTHd~~ea-~~~~Dri~v 209 (353)
T PRK10851 181 QLHEELKFTSVFVTHDQEEA-MEVADRVVV 209 (353)
T ss_pred HHHHhcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence 7643 45677777776533 345566543
No 393
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=2.5e-08 Score=89.58 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc-ceeccccccc-ccc--ce--
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLS-SAN--HV-- 95 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~-- 95 (365)
++.+.-.+..|.. +.|.||+|+|||||+++|++ +..+..|.+.+++......+... ...+ .... ... +.
T Consensus 25 l~~isl~i~~Ge~--~~I~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i--~~v~q~~~~~~~~~ 99 (269)
T PRK13648 25 LKDVSFNIPKGQW--TSIVGHNGSGKSTIAKLMIG-IEKVKSGEIFYNNQAITDDNFEKLRKHI--GIVFQNPDNQFVGS 99 (269)
T ss_pred eeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHHhhe--eEEEeChHHhcccc
Confidence 3444334444544 89999999999999999999 56777888888775431100000 0000 0000 000 00
Q ss_pred ------ecCCCCcCccch---hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844 96 ------ELSPSDAGFQDR---YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH 148 (365)
Q Consensus 96 ------~~~~~~~~~~~~---~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~ 148 (365)
.+.....+.... ..+.+.++.+.. ..+..+| ...+++++++||+ ..|+.....
T Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 179 (269)
T PRK13648 100 IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179 (269)
T ss_pred cHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 000000000000 011122222110 0111111 1237799999998 889999999
Q ss_pred HHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 149 ~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+.+.+.+... +..+|++|++.+.+. . .+|+.+
T Consensus 180 ~l~~~L~~~~~~~~~tiiivtH~~~~~~-~-~d~i~~ 214 (269)
T PRK13648 180 NLLDLVRKVKSEHNITIISITHDLSEAM-E-ADHVIV 214 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCchHHh-c-CCEEEE
Confidence 99999987643 467788888776543 2 566543
No 394
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=4.6e-08 Score=87.15 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=40.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.|.+... +..+|++|++.+. ...+.+|+.++
T Consensus 170 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l 227 (255)
T PRK11300 170 TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL-VMGISDRIYVV 227 (255)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 47899999998 88999999999999987643 4567777776553 34455665433
No 395
>PRK04132 replication factor C small subunit; Provisional
Probab=98.73 E-value=5.6e-09 Score=105.43 Aligned_cols=49 Identities=47% Similarity=0.899 Sum_probs=46.8
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHH
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTL 50 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtl 50 (365)
+|++||||++|+|++||+.+++.|+.+++.++.+|++|+||||+||+..
T Consensus 8 ~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 8 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred cHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 7999999999999999999999999999999999988999999999643
No 396
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.73 E-value=7.9e-08 Score=83.62 Aligned_cols=140 Identities=21% Similarity=0.246 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
++..+...+..|.. +.+.|++||||||+++.+.+ |..++.|.+.+++..+ ..+.
T Consensus 28 avd~Vsf~i~~ge~--~glVGESG~GKSTlgr~i~~-L~~pt~G~i~f~g~~i-------------~~~~---------- 81 (268)
T COG4608 28 AVDGVSFSIKEGET--LGLVGESGCGKSTLGRLILG-LEEPTSGEILFEGKDI-------------TKLS---------- 81 (268)
T ss_pred EecceeEEEcCCCE--EEEEecCCCCHHHHHHHHHc-CcCCCCceEEEcCcch-------------hhcc----------
Confidence 34444455566666 89999999999999999998 8899999999888654 0000
Q ss_pred CcCccchhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--C
Q 017844 101 DAGFQDRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--A 159 (365)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~------~~~~~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~ 159 (365)
.......+.+.+..+. ...+..+++ .-++++++.||+ .+|+...|...+++|.+.. .
T Consensus 82 --~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~ 159 (268)
T COG4608 82 --KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL 159 (268)
T ss_pred --hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHh
Confidence 0000001112221111 111111111 236789999998 7788888888888887653 3
Q ss_pred ceeEEEEecCCCcccHHHhccceeEEecCC
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSP 189 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~ 189 (365)
+...+|++++.. ....+.+|..+......
T Consensus 160 ~lt~lFIsHDL~-vv~~isdri~VMy~G~i 188 (268)
T COG4608 160 GLTYLFISHDLS-VVRYISDRIAVMYLGKI 188 (268)
T ss_pred CCeEEEEEEEHH-hhhhhcccEEEEecCce
Confidence 578889988765 33455667655555443
No 397
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.72 E-value=3.4e-08 Score=88.06 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceeccccc------ccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTT------LSS 91 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~------~~~ 91 (365)
+++.+.-.+..|.. +.|.||+|+||||++++|++ +..+..+.+.+++......+... ...+.... .+.
T Consensus 16 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 16 IVDGVDVTAPPGSL--TGLLGPNGSGKSTLLRLLAG-ALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence 34444444445554 89999999999999999999 55777788877775431101000 00000000 000
Q ss_pred ccceecCCC---C-cCcc---chhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844 92 ANHVELSPS---D-AGFQ---DRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREA 146 (365)
Q Consensus 92 ~~~~~~~~~---~-~~~~---~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~ 146 (365)
.+.+.+... . .... ....+.+.++.+. ......+| ...+++++++||+ ..|+...
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 000100000 0 0000 0001222222211 11111111 1237799999998 7899999
Q ss_pred HHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 147 ~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
...+.+.|.+... +..+|+++++.+. ...+.+|+.++
T Consensus 173 ~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l 210 (256)
T TIGR03873 173 QLETLALVRELAATGVTVVAALHDLNL-AASYCDHVVVL 210 (256)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 9999999987643 4567777776653 34555665433
No 398
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=2.6e-08 Score=88.72 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=40.0
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+..+...+.+.|.+... +..+|++|++.+ ....+.+|+.++
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l 211 (255)
T PRK11231 155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVL 211 (255)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEE
Confidence 47899999998 88999999999999987643 456777776655 334455665433
No 399
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=3.7e-08 Score=88.99 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=39.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|++.....+.+.|.+... +..+|++|++.+ ....+.+|+.+
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 217 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYV 217 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEE
Confidence 37799999998 78999999999999887643 456677776654 33445566543
No 400
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.72 E-value=9.8e-08 Score=80.33 Aligned_cols=143 Identities=13% Similarity=0.194 Sum_probs=76.6
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee-cCCCcceeccccccc-cccceecC---CCCc
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-DAGSRNIDLELTTLS-SANHVELS---PSDA 102 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~---~~~~ 102 (365)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.+... .+......+ .... .-..+.+. ....
T Consensus 21 ~i~~G~~--~~l~G~nGsGKStLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~~~~~~i--~~~~q~l~~~gl~~~~~~~~ 95 (180)
T cd03214 21 SIEAGEI--VGILGPNGAGKSTLLKTLAG-LLKPSSGEILLDGKDLASLSPKELARKI--AYVPQALELLGLAHLADRPF 95 (180)
T ss_pred EECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCcCCHHHHHHHH--hHHHHHHHHcCCHhHhcCCc
Confidence 3344444 89999999999999999998 556777877777644300 000000000 0000 00000000 0000
Q ss_pred CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhc
Q 017844 103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS 179 (365)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~s 179 (365)
........ +.+. ++. . ...+++++++||+ ..|+......+.+.+.+... +..+|+++++.+. ...+.+
T Consensus 96 ~~LS~G~~-qrl~-lar--a----l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d 166 (180)
T cd03214 96 NELSGGER-QRVL-LAR--A----LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL-AARYAD 166 (180)
T ss_pred ccCCHHHH-HHHH-HHH--H----HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCC
Confidence 00010000 0000 010 0 1246689999998 78999999999999987644 4567777766553 334556
Q ss_pred cceeE
Q 017844 180 RCLNI 184 (365)
Q Consensus 180 R~~~i 184 (365)
|+..+
T Consensus 167 ~~~~l 171 (180)
T cd03214 167 RVILL 171 (180)
T ss_pred EEEEE
Confidence 65444
No 401
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.72 E-value=8.6e-08 Score=76.30 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=40.2
Q ss_pred ceEEEEeCCCCCC---HHHHHHHHHHHhhhcCceeEEEEecCCC--cccHHHhccceeEEecCCCHHHHHHHHHHHHH
Q 017844 131 FKVLVLNEVDKLS---REAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK 203 (365)
Q Consensus 131 ~~vliiDE~~~L~---~~~~~~Ll~~le~~~~~~~~Il~t~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~ 203 (365)
.+++||||+..|- +....++-.+|+. ...+|.+-+..+ .+...++++...+.| ++++..-.++.+++.
T Consensus 101 aDvIIIDEIGpMElks~~f~~~ve~vl~~---~kpliatlHrrsr~P~v~~ik~~~~v~v~--lt~~NR~~i~~~Il~ 173 (179)
T COG1618 101 ADVIIIDEIGPMELKSKKFREAVEEVLKS---GKPLIATLHRRSRHPLVQRIKKLGGVYVF--LTPENRNRILNEILS 173 (179)
T ss_pred CCEEEEecccchhhccHHHHHHHHHHhcC---CCcEEEEEecccCChHHHHhhhcCCEEEE--EccchhhHHHHHHHH
Confidence 4899999997764 3444444444443 233555555443 466778888776665 444444455555544
No 402
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.72 E-value=4.8e-08 Score=91.24 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=39.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++|+++||+ ..|++.....+.+.|.+... +..+|++|++.+.+ ..+.+|+.
T Consensus 181 ~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~-~~l~DrI~ 236 (382)
T TIGR03415 181 MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEA-LKIGNRIA 236 (382)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence 47899999998 88999999988888877543 46678888776633 34556653
No 403
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.72 E-value=3.6e-08 Score=86.90 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=40.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|+......+.+.|.+...+..+|++|++.+.+ . ..+|+.
T Consensus 156 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~-~-~~d~v~ 208 (238)
T cd03249 156 RNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTI-R-NADLIA 208 (238)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-h-hCCEEE
Confidence 47799999998 7899999999999998775456678888776644 3 456653
No 404
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.72 E-value=8.2e-09 Score=101.02 Aligned_cols=158 Identities=15% Similarity=0.141 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC----Ccceeccccc------cc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLELTT------LS 90 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~------~~ 90 (365)
+++.+.-.+..|.. +.|.||+|+|||||++++++ +..++.+.+.+++..+...+. .....+.+.. .+
T Consensus 19 ~l~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK10762 19 ALSGAALNVYPGRV--MALVGENGAGKSTMMKVLTG-IYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95 (501)
T ss_pred EeeeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence 44444445555555 89999999999999999999 557778888887754311000 0001110000 00
Q ss_pred cccceecCCCC---cCccch----hHHHHHHHHHHhcC----C-CCCC------------CCCCceEEEEeCC-CCCCHH
Q 017844 91 SANHVELSPSD---AGFQDR----YVVQEVIKEMAKNR----P-IDTK------------GKRGFKVLVLNEV-DKLSRE 145 (365)
Q Consensus 91 ~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~----~-~~~~------------~~~~~~vliiDE~-~~L~~~ 145 (365)
..+.+.+.... .+..+. ..+.+.++.+.-.. + ..+| ...+++++++||+ ..|++.
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 00111110000 000011 11222232221100 0 0111 1247899999998 889999
Q ss_pred HHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844 146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 146 ~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
....+.+.+.+... +..+|++|++.+ ....+.+|+.
T Consensus 176 ~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~ 212 (501)
T PRK10762 176 ETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVT 212 (501)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 99999988887643 345666666654 3345556653
No 405
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.71 E-value=6.4e-07 Score=88.00 Aligned_cols=193 Identities=13% Similarity=0.147 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844 18 HQDIAQNLKKLVTEQ-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
|++++..+.-..-.. .+..++|.|+.|+||||+++.++..+ ... ..| .. +.
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~ll-p~~--------~p~-r~------------------~p 59 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALL-PAG--------TPL-RR------------------LP 59 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhc-CCC--------CCc-cc------------------CC
Confidence 555555544333333 55669999999999999999999844 221 011 00 00
Q ss_pred cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC-----------ceeEEE
Q 017844 97 LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-----------SCRLIL 165 (365)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~-----------~~~~Il 165 (365)
...++........+...+..-.....-+.-...+..|++|||+..+++..++.|++.|++... ...|++
T Consensus 60 ~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~L 139 (584)
T PRK13406 60 PGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGL 139 (584)
T ss_pred CCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEE
Confidence 111111111111122222211110000111234557999999999999999999999986321 124666
Q ss_pred EecCCC-----cccHHHhccce-eEEecCCCHHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHHcC--C--CHHHH
Q 017844 166 CCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIV-------KVLEFIAKKEGLQLPSGFATRLAEKSN--R--SLRRA 228 (365)
Q Consensus 166 ~t~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~-------~iL~~~~~~~~~~i~~~~~~~i~~~~~--g--~lr~a 228 (365)
+++... .+.+++.+||. .+.+..++..+.. ++...+..-.++.++++.++++++.+. | +.|..
T Consensus 140 Iat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~ 219 (584)
T PRK13406 140 VALDEGAEEDERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAP 219 (584)
T ss_pred EecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHH
Confidence 665333 38899999995 7888887766532 233322222478899999998877432 2 67877
Q ss_pred HHHHHHHHhc
Q 017844 229 ILSFETCRVQ 238 (365)
Q Consensus 229 i~~l~~~~~~ 238 (365)
+.++..+...
T Consensus 220 i~llraARa~ 229 (584)
T PRK13406 220 LLALRAARAA 229 (584)
T ss_pred HHHHHHHHHH
Confidence 7777654333
No 406
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.71 E-value=3e-08 Score=85.45 Aligned_cols=153 Identities=13% Similarity=0.189 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC---Ccceecccc-----ccccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLELT-----TLSSA 92 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~-----~~~~~ 92 (365)
+++.+.-.+..|.. +.+.||+|+|||||++++++ +..+..+.+.+++......+. .....+... ..+..
T Consensus 23 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 99 (207)
T cd03369 23 VLKNVSFKVKAGEK--IGIVGRTGAGKSTLILALFR-FLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIR 99 (207)
T ss_pred cccCceEEECCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHH
Confidence 34444444444544 99999999999999999999 556777777777643310000 000000000 00000
Q ss_pred cceecCCCCcCccchhHHHHHHHHHHhcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC
Q 017844 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~ 159 (365)
+.+.+. .......+.+.++ + ......+| ...+++++++||+ ..|+......+.+.|.+...
T Consensus 100 ~~l~~~----~~~~~~~~~~~l~-~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 173 (207)
T cd03369 100 SNLDPF----DEYSDEEIYGALR-V-SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT 173 (207)
T ss_pred HHhccc----CCCCHHHHHHHhh-c-cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC
Confidence 000000 0001111122222 1 01111111 1247799999998 78999999999999988755
Q ss_pred ceeEEEEecCCCcccHHHhccceeE
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
+..+|++|++.+.+ .. .+|+..+
T Consensus 174 ~~tiii~th~~~~~-~~-~d~v~~l 196 (207)
T cd03369 174 NSTILTIAHRLRTI-ID-YDKILVM 196 (207)
T ss_pred CCEEEEEeCCHHHH-hh-CCEEEEE
Confidence 66778888876644 22 3555433
No 407
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.71 E-value=1.5e-08 Score=90.86 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
+++.+.-.+..|.. +.|.||+|+|||||++++++ +..+..|.+.+++...
T Consensus 26 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i 75 (265)
T TIGR02769 26 VLTNVSLSIEEGET--VGLLGRSGCGKSTLARLLLG-LEKPAQGTVSFRGQDL 75 (265)
T ss_pred EeeCceeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEc
Confidence 34444444555555 99999999999999999999 5677888888777543
No 408
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.71 E-value=5.7e-08 Score=86.74 Aligned_cols=54 Identities=6% Similarity=0.075 Sum_probs=38.7
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+..+...+.+.+.+... +..+|++|++.. ..+.+.+|+..
T Consensus 160 ~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~ 215 (264)
T PRK13546 160 VNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAW 215 (264)
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEE
Confidence 47799999998 78999999889999887643 455666666644 33455566543
No 409
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.71 E-value=4.2e-08 Score=85.99 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++|+++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+..
T Consensus 142 ~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 198 (230)
T TIGR02770 142 LEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAV 198 (230)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 36789999998 78999999999999887643 456667776655 33445566543
No 410
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=4.6e-08 Score=88.21 Aligned_cols=159 Identities=14% Similarity=0.224 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceeccccc-------cc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTT-------LS 90 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~-------~~ 90 (365)
+++.+.-.+..|.. +.|.||+|+||||++++|++ +..+..|.+.+++......+... ...+.+.. .+
T Consensus 19 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 19 ALNNINFIAPRNSR--IAVIGPNGAGKSTLFRHFNG-ILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred eeeEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 33444444445554 89999999999999999999 56788888888775431100000 00000000 00
Q ss_pred cccceecCCCCcCccch---hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844 91 SANHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS 149 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~ 149 (365)
..+.+.+.....+.... ..+.+.++.+. ...+..+| ...+++++|+||+ ..|+..+...
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 00000000000000000 01122222211 11111112 1247899999998 7899999999
Q ss_pred HHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+.+.+.+... +..+|++|++.+. ...+.+|+.+
T Consensus 176 l~~~l~~l~~~~g~tvli~tH~~~~-~~~~~drv~~ 210 (277)
T PRK13652 176 LIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYV 210 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEE
Confidence 9999987643 4567777776653 3445566643
No 411
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=3.2e-08 Score=86.64 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=40.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+...+..+|++|++.+.+ +. .+|+..+
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~i~~l 210 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTI-KN-ADKILVL 210 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-hh-CCEEEEE
Confidence 47899999998 7899999999999998875566778888776643 32 4555433
No 412
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.71 E-value=1.8e-08 Score=89.28 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=40.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+......+|++|++.+. ...+.+|+.+
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~-~~~~~d~i~~ 215 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQ-AARISDRTAF 215 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHH-HHHhCCEEEE
Confidence 47899999998 789999999999999887555567777776553 3445566543
No 413
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.71 E-value=4.7e-08 Score=88.79 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=37.4
Q ss_pred cCCCCCCccccC----HHHHHHHHHHHHc---C-CCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844 7 YRPKTLDQVIVH----QDIAQNLKKLVTE---Q-DCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 7 ~rP~~~~~iig~----~~~~~~l~~~l~~---~-~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
+...+|+++... ..+......++.. + ...+++|+||+|+|||+++.++++++..
T Consensus 121 ~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 121 LLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred HhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345678887643 3344444555543 1 2334999999999999999999998853
No 414
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=4.8e-08 Score=85.91 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=39.7
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+...+..+.+.+.+... ...+|++|++... .+.+.+|+.+
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~-~~~~~d~i~~ 202 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE-AWALADKVAI 202 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEE
Confidence 47799999998 78999999999999987643 4667777776553 3445566543
No 415
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=7.9e-08 Score=79.00 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=65.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHH--HH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE--VI 114 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l 114 (365)
+.|.||+|+||||+++++++. ..+..+.+.+++... .. .. .......+.+..+ . .....+. +.
T Consensus 28 ~~i~G~nGsGKStll~~l~g~-~~~~~G~i~~~~~~~-~~--~~-------~~~~~~~i~~~~q-l---S~G~~~r~~l~ 92 (157)
T cd00267 28 VALVGPNGSGKSTLLRAIAGL-LKPTSGEILIDGKDI-AK--LP-------LEELRRRIGYVPQ-L---SGGQRQRVALA 92 (157)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCEEc-cc--CC-------HHHHHhceEEEee-C---CHHHHHHHHHH
Confidence 899999999999999999984 456667676666432 00 00 0000111222221 1 1011111 11
Q ss_pred HHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCc
Q 017844 115 KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSK 172 (365)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~ 172 (365)
..+ ..+++++++||+ ..|+......+.+.+.+.... ..+++++++.+.
T Consensus 93 ~~l----------~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 142 (157)
T cd00267 93 RAL----------LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142 (157)
T ss_pred HHH----------hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 111 234689999999 689999999999999876443 556666666543
No 416
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=4.3e-08 Score=88.83 Aligned_cols=160 Identities=18% Similarity=0.313 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC--CC-----cceeccccc----c
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA--GS-----RNIDLELTT----L 89 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~--~~-----~~~~~~~~~----~ 89 (365)
+++.+.-.+..|.. +.|.||+|+|||||+++|++ +..++.+.+.+++......+ .. ....+.... .
T Consensus 22 ~l~~vsl~i~~Ge~--~~iiG~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 98 (287)
T PRK13641 22 GLDNISFELEEGSF--VALVGHTGSGKSTLMQHFNA-LLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL 98 (287)
T ss_pred ceeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhh
Confidence 44444445555655 89999999999999999998 66788888888876441100 00 000000000 0
Q ss_pred ---ccccceecCCCCcCccch---hHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CCCCH
Q 017844 90 ---SSANHVELSPSDAGFQDR---YVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (365)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~------~~~~~~~~------------~~~~~vliiDE~-~~L~~ 144 (365)
+..+.+.+.....+.... ..+.+.++.+.- .....+|+ ..+++++++||+ ..|+.
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~ 178 (287)
T PRK13641 99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178 (287)
T ss_pred ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 000000000000000000 011222222111 00011111 237899999998 88999
Q ss_pred HHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 145 ~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
..+..+.+.+.+... +..+|++|++.+ ....+.+|+.++
T Consensus 179 ~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l 218 (287)
T PRK13641 179 EGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVL 218 (287)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999988743 456666666544 334566776544
No 417
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=98.70 E-value=1.2e-07 Score=79.11 Aligned_cols=111 Identities=21% Similarity=0.318 Sum_probs=84.5
Q ss_pred CCCCceEEEEeCC----CCCCHHHHHHHHHHHhhhcCceeEEEEec-CCC---cccHHHhccceeEEecCCCHHHHHHHH
Q 017844 127 GKRGFKVLVLNEV----DKLSREAQHSLRRTMEKYSASCRLILCCN-SSS---KVTEAIRSRCLNIRINSPTEEQIVKVL 198 (365)
Q Consensus 127 ~~~~~~vliiDE~----~~L~~~~~~~Ll~~le~~~~~~~~Il~t~-~~~---~l~~~l~sR~~~i~~~~~~~~~~~~iL 198 (365)
..+..+++++.++ +.........|.++++.++.++.+|+.++ ..+ ++...+...+.++.+.+|+..++..|+
T Consensus 54 lF~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i 133 (172)
T PF06144_consen 54 LFGDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWI 133 (172)
T ss_dssp SSSSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHH
T ss_pred ccCCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHH
Confidence 3667899999998 44566777889999999988888888888 333 356777778889999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 199 EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+..+++.|+.+++++++.+++..++|++.+.+.++++++
T Consensus 134 ~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 134 KERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999998864
No 418
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=3.9e-08 Score=86.54 Aligned_cols=54 Identities=13% Similarity=0.267 Sum_probs=40.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.|.+...+..+|+++++.+.+ .. .+|+..+
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-~~-~d~~~~l 208 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VN-ADKIIVL 208 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-Hh-CCEEEEE
Confidence 47899999998 7899999999999998775555677777776644 33 5665443
No 419
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=4.4e-08 Score=88.77 Aligned_cols=156 Identities=17% Similarity=0.227 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Cc----ceecccccccc-c--
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SR----NIDLELTTLSS-A-- 92 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~----~~~~~~~~~~~-~-- 92 (365)
+++.+.-.+..|.. +.|.||+|+|||||++++++ +..+..+.+.+++........ .. ...+ ..... +
T Consensus 21 ~l~~vsl~i~~Ge~--v~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i--g~v~q~~~~ 95 (288)
T PRK13643 21 ALFDIDLEVKKGSY--TALIGHTGSGKSTLLQHLNG-LLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKV--GVVFQFPES 95 (288)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEECccccccccHHHHHhhE--EEEecCcch
Confidence 44444445555655 99999999999999999999 667888888888754310000 00 0000 00000 0
Q ss_pred cce--------ecCCCCcCccch---hHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CCC
Q 017844 93 NHV--------ELSPSDAGFQDR---YVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKL 142 (365)
Q Consensus 93 ~~~--------~~~~~~~~~~~~---~~~~~~l~~~~~------~~~~~~~~------------~~~~~vliiDE~-~~L 142 (365)
..+ .+.+...+.... ..+.+.++.+.- ..+..+|+ ..+++++++||+ ..|
T Consensus 96 ~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gL 175 (288)
T PRK13643 96 QLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175 (288)
T ss_pred hcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 000 000000010000 011222221111 11111111 237899999998 789
Q ss_pred CHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844 143 SREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 143 ~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
++.....+++.+.+... +..+|++|++.+ ....+.+|+.
T Consensus 176 D~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~ 215 (288)
T PRK13643 176 DPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVY 215 (288)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEE
Confidence 99999999999987643 456666776654 3345566664
No 420
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.70 E-value=1e-07 Score=83.12 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=38.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC 181 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~ 181 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|.
T Consensus 130 ~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~-~~~~~d~i 183 (223)
T TIGR03771 130 TRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQ-AMATCDRV 183 (223)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEE
Confidence 47899999998 78999999999999987653 4567777776553 33444554
No 421
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.70 E-value=4.1e-08 Score=86.81 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=38.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHH-hccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l-~sR~~ 182 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+.+ ..+ .+|+.
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~-~~~~~d~i~ 216 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLL-NYIKPDYVH 216 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH-HhhcCCeEE
Confidence 37889999998 88999999999999988753 45677777766533 333 35543
No 422
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.69 E-value=4.6e-08 Score=86.14 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=39.9
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|+......+.+.+.+...+..+|++|++.+.+ . ..+|+.
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~-~~d~v~ 207 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-K-NADRII 207 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-H-hCCEEE
Confidence 37799999998 8899999999999998876556778888777644 2 245543
No 423
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=5.9e-08 Score=87.38 Aligned_cols=151 Identities=15% Similarity=0.264 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++..+...+... ... ...+.+.++
T Consensus 17 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~-~~~-------~~~i~~v~q 85 (275)
T PRK13639 17 ALKGINFKAEKGEM--VALLGPNGAGKSTLFLHFNG-ILKPTSGEVLIKGEPIKYDKKSL-LEV-------RKTVGIVFQ 85 (275)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCccEEEECCEECccccchH-HHH-------HhheEEEee
Confidence 34444444555555 99999999999999999998 56777888888775441001000 000 000111111
Q ss_pred Cc--------------------Cccch---hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-
Q 017844 101 DA--------------------GFQDR---YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV- 139 (365)
Q Consensus 101 ~~--------------------~~~~~---~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~- 139 (365)
+. +.... ..+.+.++.+.- ..+..+| ...+++++++||+
T Consensus 86 ~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 165 (275)
T PRK13639 86 NPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165 (275)
T ss_pred ChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 10 00000 011112221100 0000111 1247899999998
Q ss_pred CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 140 DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 140 ~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
..|+...+..+.+.+.+... +..+|+++++.+. ...+.+|+..
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~-~~~~~d~i~~ 209 (275)
T PRK13639 166 SGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL-VPVYADKVYV 209 (275)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEE
Confidence 78999999999999987643 4567777776553 3345566543
No 424
>PRK09183 transposase/IS protein; Provisional
Probab=98.69 E-value=1.3e-07 Score=84.07 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=40.7
Q ss_pred CceEEEEeCCCC--CCHHHHHHHHHHHhhhcCceeEEEEecCCCc-----c------cHHHhccc----eeEEecCCC
Q 017844 130 GFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCCNSSSK-----V------TEAIRSRC----LNIRINSPT 190 (365)
Q Consensus 130 ~~~vliiDE~~~--L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~-----l------~~~l~sR~----~~i~~~~~~ 190 (365)
.+.++||||++. ++....+.|+++++....+..+|++||.+.. + ..++.+|. ..+.|...+
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~s 241 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGES 241 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEEeecCCC
Confidence 347999999976 4556667889988765445568888886542 1 13555654 467776654
No 425
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.69 E-value=7.4e-09 Score=101.47 Aligned_cols=155 Identities=10% Similarity=0.189 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc--ceecccccccc-------
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLELTTLSS------- 91 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~------- 91 (365)
+++.+.-.+..|.. +.|.||+|+|||||++++++ +..+..|.+.+++..+...+... ...+ .....
T Consensus 26 il~~vsl~i~~Ge~--~~liG~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i--~~v~q~~~~~~~ 100 (510)
T PRK15439 26 VLKGIDFTLHAGEV--HALLGGNGAGKSTLMKIIAG-IVPPDSGTLEIGGNPCARLTPAKAHQLGI--YLVPQEPLLFPN 100 (510)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHHHhCCE--EEEeccCccCCC
Confidence 44444444555555 89999999999999999998 55677788877765431000000 0000 00000
Q ss_pred ---ccceecCCCCcCccchhHHHHHHHHHHhcC-----CCCCC------------CCCCceEEEEeCC-CCCCHHHHHHH
Q 017844 92 ---ANHVELSPSDAGFQDRYVVQEVIKEMAKNR-----PIDTK------------GKRGFKVLVLNEV-DKLSREAQHSL 150 (365)
Q Consensus 92 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~L 150 (365)
.+.+.+.... .......+.+.++.+.-.. ...+| ...+++++++||+ ..|++.....+
T Consensus 101 ~tv~e~l~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l 179 (510)
T PRK15439 101 LSVKENILFGLPK-RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL 179 (510)
T ss_pred CcHHHHhhccccc-chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 0000000000 0000011222222211100 00111 1247899999998 88999999999
Q ss_pred HHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844 151 RRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 151 l~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+.|.+... +..+|++|++.+. ...+.+|+.
T Consensus 180 ~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~i~ 211 (510)
T PRK15439 180 FSRIRELLAQGVGIVFISHKLPE-IRQLADRIS 211 (510)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEE
Confidence 999887643 3556666666553 344556653
No 426
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.69 E-value=4.8e-07 Score=79.24 Aligned_cols=177 Identities=18% Similarity=0.225 Sum_probs=99.9
Q ss_pred cccCHHHHHHHHHHHH----cCC--CCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844 15 VIVHQDIAQNLKKLVT----EQD--CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (365)
Q Consensus 15 iig~~~~~~~l~~~l~----~~~--~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (365)
+.||.-+++.+...++ .+. .|- +-|+|++||||+..++.||+.++......-++.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~------------------ 145 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH------------------ 145 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHH------------------
Confidence 4677665555554443 332 232 789999999999999999998764432110000
Q ss_pred ccccccceecCCCCcCccchhHHHH-HHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-------C
Q 017844 88 TLSSANHVELSPSDAGFQDRYVVQE-VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------A 159 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-------~ 159 (365)
.+.+. .........+ ..++ +...+..... ..++.++|+||+|.|.++..+.|-..++.++ .
T Consensus 146 ~fvat----~hFP~~~~ie--~Yk~eL~~~v~~~v~-----~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~fr 214 (344)
T KOG2170|consen 146 HFVAT----LHFPHASKIE--DYKEELKNRVRGTVQ-----ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFR 214 (344)
T ss_pred Hhhhh----ccCCChHHHH--HHHHHHHHHHHHHHH-----hcCCceEEechhhhcCHhHHHHHhhhhcccccccccccc
Confidence 00000 0000000000 0111 1111222111 3456899999999999999888888887543 3
Q ss_pred ceeEEEEecCCCcccH-----------------------HHh-------------ccc-------eeEEecCCCHHHHHH
Q 017844 160 SCRLILCCNSSSKVTE-----------------------AIR-------------SRC-------LNIRINSPTEEQIVK 196 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~-----------------------~l~-------------sR~-------~~i~~~~~~~~~~~~ 196 (365)
+..||+.+|....... ++. ||. ..|.|-|++...+..
T Consensus 215 kaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~ 294 (344)
T KOG2170|consen 215 KAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRS 294 (344)
T ss_pred ceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHH
Confidence 5679999875542111 110 111 146677777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH
Q 017844 197 VLEFIAKKEGLQLPSGFATRLAEK 220 (365)
Q Consensus 197 iL~~~~~~~~~~i~~~~~~~i~~~ 220 (365)
-++..+.++|...+.+.++.+++.
T Consensus 295 C~r~el~~rg~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 295 CIRAELRKRGLAPDQDFVERVANS 318 (344)
T ss_pred HHHHHHHhcccccchHHHHHHHHh
Confidence 777666677766666666666654
No 427
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.69 E-value=5.8e-07 Score=96.31 Aligned_cols=197 Identities=14% Similarity=0.206 Sum_probs=103.9
Q ss_pred CCCCCccccCHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844 9 PKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (365)
Q Consensus 9 P~~~~~iig~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (365)
+..+++++|.+..++.+..++.-+ ...-+.|+|++|+||||+|+++++.+.....+.+.++........
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~--------- 250 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM--------- 250 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch---------
Confidence 456889999999888888887532 222399999999999999999988765443333332211000000
Q ss_pred cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCC--------CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDT--------KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~ 158 (365)
.... .....+.... ....++.+..+........ ....++-++|+|+++. ....+.|....+...
T Consensus 251 ~~~~-----~~~~~~~~~~-~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~ 322 (1153)
T PLN03210 251 EIYS-----SANPDDYNMK-LHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFG 322 (1153)
T ss_pred hhcc-----cccccccchh-HHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCC
Confidence 0000 0000000000 0000111111111000000 0124556899999973 344444444333334
Q ss_pred CceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Q 017844 159 ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP--SGFATRLAEKSNRSL 225 (365)
Q Consensus 159 ~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~--~~~~~~i~~~~~g~l 225 (365)
.+.++|+||++..-+ .. ..+ .++.+..++.++..+++...+-+....-+ .+....+++.++|-+
T Consensus 323 ~GsrIIiTTrd~~vl-~~--~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 323 SGSRIIVITKDKHFL-RA--HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP 389 (1153)
T ss_pred CCcEEEEEeCcHHHH-Hh--cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 456777777764322 11 112 47888899999998888877754332211 234566777887755
No 428
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.68 E-value=2e-08 Score=89.98 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceeccccc------ccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTT------LSS 91 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~------~~~ 91 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+.. ....+.+.. .+.
T Consensus 22 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 98 (265)
T PRK10253 22 VAENLTVEIPDGHF--TAIIGPNGCGKSTLLRTLSR-LMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITV 98 (265)
T ss_pred EeeecceEECCCCE--EEEECCCCCCHHHHHHHHcC-CCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcH
Confidence 44444444555554 99999999999999999999 5567777777776543100000 000000000 000
Q ss_pred ccceecC--CC-C-cC-ccc--hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844 92 ANHVELS--PS-D-AG-FQD--RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREA 146 (365)
Q Consensus 92 ~~~~~~~--~~-~-~~-~~~--~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~ 146 (365)
.+.+.+. .. . .. ... ...+.+.++.+. ......+| ...+++++++||+ ..|+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 0001000 00 0 00 000 011222222211 11111111 1247899999998 7899999
Q ss_pred HHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 147 ~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
...+.+.|.+... +..+|++|++.+ ....+.+|+..
T Consensus 179 ~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~ 216 (265)
T PRK10253 179 QIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIA 216 (265)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999987643 456777776655 34455566543
No 429
>PHA00729 NTP-binding motif containing protein
Probab=98.68 E-value=2.1e-07 Score=79.77 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=25.7
Q ss_pred cccHHHhccceeEEecCCCHHHHHHHHHH
Q 017844 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEF 200 (365)
Q Consensus 172 ~l~~~l~sR~~~i~~~~~~~~~~~~iL~~ 200 (365)
.+.++++|||..+.|.+++.+++.+.|+.
T Consensus 110 ~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 110 KIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred HHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 46788999999999999999999998875
No 430
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.68 E-value=5.6e-08 Score=84.61 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=40.9
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+......+|++|++.+ .. .+.+|+..+
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~-~~~d~v~~l 211 (220)
T cd03245 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS-LL-DLVDRIIVM 211 (220)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HH-HhCCEEEEE
Confidence 47899999998 88999999999999988765566777777765 33 455555443
No 431
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.68 E-value=8.9e-08 Score=84.95 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=76.8
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc-ceecCCCcceeccccccccccceecCCCCcCccc
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD 106 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (365)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.. +...|........ ...+...++.+.. +. .
T Consensus 26 ~i~~Ge~--~~I~G~NGsGKSTLl~~i~G-l~~p~~G~i~~~~~~~i~~v~q~~~~~~~-l~~~~~~~~~~~~---~~-~ 97 (251)
T PRK09544 26 ELKPGKI--LTLLGPNGAGKSTLVRVVLG-LVAPDEGVIKRNGKLRIGYVPQKLYLDTT-LPLTVNRFLRLRP---GT-K 97 (251)
T ss_pred EEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCccCEEEeccccccccc-cChhHHHHHhccc---cc-c
Confidence 3444544 99999999999999999999 556777766655421 1111111000000 0000000000000 00 0
Q ss_pred hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEE
Q 017844 107 RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILC 166 (365)
Q Consensus 107 ~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~ 166 (365)
...+.+.++.+. ......+| ...+++++++||+ ..|+......+.+.+.+... +..+|++
T Consensus 98 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiiv 177 (251)
T PRK09544 98 KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMV 177 (251)
T ss_pred HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 111222222211 11111111 1247799999998 88999999999998877643 4567777
Q ss_pred ecCCCcccHHHhcccee
Q 017844 167 CNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 167 t~~~~~l~~~l~sR~~~ 183 (365)
|++.+. ...+.+|+.+
T Consensus 178 sH~~~~-i~~~~d~i~~ 193 (251)
T PRK09544 178 SHDLHL-VMAKTDEVLC 193 (251)
T ss_pred ecCHHH-HHHhCCEEEE
Confidence 776553 3344555543
No 432
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.68 E-value=3.8e-08 Score=86.02 Aligned_cols=45 Identities=20% Similarity=0.396 Sum_probs=36.9
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l 173 (365)
.+++++++||+ ..|+......+.+.+.+...+..+|++|++.+.+
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 212 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTV 212 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 47899999998 7899999999999998765566788888776643
No 433
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.68 E-value=1e-07 Score=85.68 Aligned_cols=52 Identities=8% Similarity=0.146 Sum_probs=38.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC 181 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~ 181 (365)
.+++++++||+ ..|++.....+.+.|.+... +..+|+++++.+.+ ..+.+|+
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~-~~~~d~v 212 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSV-TEFCDYT 212 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEE
Confidence 37899999998 88999999999999987643 45677777765533 3344554
No 434
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=5.2e-08 Score=88.08 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++......+... ..+ ...+.+.++
T Consensus 21 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-l~~p~~G~i~i~g~~~~~~~~~~-~~~-------~~~ig~v~q 89 (283)
T PRK13636 21 ALKGININIKKGEV--TAILGGNGAGKSTLFQNLNG-ILKPSSGRILFDGKPIDYSRKGL-MKL-------RESVGMVFQ 89 (283)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCccEEEECCEECCCCcchH-HHH-------HhhEEEEec
Confidence 44444445555655 99999999999999999999 56778888888875441000000 000 000111111
Q ss_pred Cc--------------------CccchhHHHHHHHHHHhcCCC---------CCC------------CCCCceEEEEeCC
Q 017844 101 DA--------------------GFQDRYVVQEVIKEMAKNRPI---------DTK------------GKRGFKVLVLNEV 139 (365)
Q Consensus 101 ~~--------------------~~~~~~~~~~~l~~~~~~~~~---------~~~------------~~~~~~vliiDE~ 139 (365)
+. +. ......+.+..+.....+ .+| ...+++++++||+
T Consensus 90 ~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEP 168 (283)
T PRK13636 90 DPDNQLFSASVYQDVSFGAVNLKL-PEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168 (283)
T ss_pred CcchhhccccHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 10 00 000111111111111111 111 1247899999998
Q ss_pred -CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 140 -DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 140 -~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
..|+......+.+.+.+... +..+|++|++.+. ...+.+|..+
T Consensus 169 t~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~ 214 (283)
T PRK13636 169 TAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFV 214 (283)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEE
Confidence 88999999999998887643 4566777766554 3455666643
No 435
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2.9e-08 Score=88.68 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=40.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+......+|++|++.+. ...+.+|+.+
T Consensus 173 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~-~~~~~d~i~~ 227 (260)
T PRK10744 173 IRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ-AARCSDYTAF 227 (260)
T ss_pred CCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHHhCCEEEE
Confidence 47899999998 789999999999999887555567777776553 3445566543
No 436
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.1e-07 Score=84.56 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=40.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+...+..+|++|++.+. ...+.+|+..
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~-~~~~~d~i~~ 217 (250)
T PRK14262 163 VEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQ-AIRIADYIAF 217 (250)
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhCCEEEE
Confidence 47899999998 789999999999999887555667777776553 3344566543
No 437
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.67 E-value=5.3e-08 Score=89.72 Aligned_cols=54 Identities=11% Similarity=0.234 Sum_probs=40.0
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.|.+... +..+|++|++.+. ...+.+|+.+
T Consensus 117 ~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e-~~~~~d~i~v 173 (325)
T TIGR01187 117 FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEE-AMTMSDRIAI 173 (325)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 47899999998 88999999999998887542 4667778777653 2445566543
No 438
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2.4e-08 Score=88.87 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=40.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.|.+...+..+|+++++.+. ...+.+|+.+
T Consensus 166 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~-~~~~~d~i~~ 220 (253)
T PRK14267 166 MKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ-AARVSDYVAF 220 (253)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH-HHhhCCEEEE
Confidence 47899999998 789999999999999887555667777776553 3445566543
No 439
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.66 E-value=4e-08 Score=85.56 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=36.9
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l 173 (365)
.+++++++||+ ..|+......+.+.|.+...+..+|++|++...+
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 201 (221)
T cd03244 156 RKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI 201 (221)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 47789999998 7899999999999998875566778888776644
No 440
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=6.6e-08 Score=87.71 Aligned_cols=160 Identities=16% Similarity=0.255 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec-CC-C-----cceeccccc----c
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID-AG-S-----RNIDLELTT----L 89 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~-~~-~-----~~~~~~~~~----~ 89 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..++.+.+.+++..+... +. . ....+.+.. +
T Consensus 22 ~L~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 22 ALYDVNVSIPSGSY--VAIIGHTGSGKSTLLQHLNG-LLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL 98 (290)
T ss_pred ceeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence 44444445555655 99999999999999999998 5577788888877544100 00 0 000000000 0
Q ss_pred ---ccccceecCCCCcCccch---hHHHHHHHHHHhc------CCCCCC------------CCCCceEEEEeCC-CCCCH
Q 017844 90 ---SSANHVELSPSDAGFQDR---YVVQEVIKEMAKN------RPIDTK------------GKRGFKVLVLNEV-DKLSR 144 (365)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~------~~~~~~------------~~~~~~vliiDE~-~~L~~ 144 (365)
+..+.+.+.....+.... ..+.+.++.+.-. .+..+| ...+++++++||+ ..|++
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 000000000000010000 0112222221110 111111 1247899999998 78999
Q ss_pred HHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 145 ~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
..+..+++.+.+... +..+|++|++.+. ...+.+|+.++
T Consensus 179 ~~~~~l~~~L~~l~~~~g~tviiitHd~~~-~~~~~drv~~l 219 (290)
T PRK13634 179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMED-AARYADQIVVM 219 (290)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 999999999987643 4567777776553 34556776544
No 441
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=1.2e-08 Score=99.99 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC--CCccceeccccceecCCC----cceeccccc-----
Q 017844 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS----RNIDLELTT----- 88 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~--~~~~i~~~~~~~~~~~~~----~~~~~~~~~----- 88 (365)
.+++.+.-.+..|.. +.|.||+|+|||||++++++. ..+ ..|.+.+++..+...+.. ....+.+..
T Consensus 19 ~il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl-~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 19 KALDNVSLKVRAGEI--VSLCGENGAGKSTLMKVLSGV-YPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred EeecceeEEEeCCeE--EEEECCCCCCHHHHHHHHhCC-CCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 345555555555655 899999999999999999994 443 677787776543110000 000000000
Q ss_pred -cccccceecCCCCc--Cccch----hHHHHHHHHHHhcCCC-----CCC------------CCCCceEEEEeCC-CCCC
Q 017844 89 -LSSANHVELSPSDA--GFQDR----YVVQEVIKEMAKNRPI-----DTK------------GKRGFKVLVLNEV-DKLS 143 (365)
Q Consensus 89 -~~~~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~-----~~~------------~~~~~~vliiDE~-~~L~ 143 (365)
.+..+.+.+..... +..+. ..+.+.++.+.-.... .+| ...+++++++||+ ..|+
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 175 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLT 175 (506)
T ss_pred CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 00001111110000 00011 1122333322110000 111 1247899999998 7899
Q ss_pred HHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844 144 REAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 144 ~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
+.....+.+.|.+... +..+|++|++.+ ....+.+|+.
T Consensus 176 ~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~ 214 (506)
T PRK13549 176 ESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTIC 214 (506)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEE
Confidence 9999999999987643 345666666544 3344455553
No 442
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.66 E-value=3e-08 Score=81.99 Aligned_cols=62 Identities=13% Similarity=0.291 Sum_probs=38.0
Q ss_pred CceEEEEeCCCCC---CHHHHHHHHHHHhhhcCceeEEEEecCC--CcccHHHhcc--ceeEEecCCCHHHH
Q 017844 130 GFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSS--SKVTEAIRSR--CLNIRINSPTEEQI 194 (365)
Q Consensus 130 ~~~vliiDE~~~L---~~~~~~~Ll~~le~~~~~~~~Il~t~~~--~~l~~~l~sR--~~~i~~~~~~~~~~ 194 (365)
..++++|||+..| ++..++++.++|+. +..+|.+-... ..+.+.+++| +.++.+.+-+.+.+
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s---~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDS---NKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCT---TSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcC---CCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhH
Confidence 5579999999766 56777888888882 34455555444 3578899988 77888876655544
No 443
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=6.4e-08 Score=87.26 Aligned_cols=156 Identities=16% Similarity=0.235 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC---Ccceeccccc-------cc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLELTT-------LS 90 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~-------~~ 90 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++......+. .....+.+.. .+
T Consensus 22 ~l~~v~l~i~~Ge~--~~I~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (277)
T PRK13642 22 QLNGVSFSITKGEW--VSIIGQNGSGKSTTARLIDG-LFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGAT 98 (277)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCC
Confidence 33444444455555 99999999999999999999 557788888887754310000 0000000000 00
Q ss_pred cccceecCCCCcCccchhH----HHHHHHHH-----HhcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844 91 SANHVELSPSDAGFQDRYV----VQEVIKEM-----AKNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH 148 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~----~~~~l~~~-----~~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~ 148 (365)
..+.+.+.....+. .... +.+.++.+ ....+..+| ...+++++++||+ ..|+.....
T Consensus 99 v~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~ 177 (277)
T PRK13642 99 VEDDVAFGMENQGI-PREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177 (277)
T ss_pred HHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 00000000000000 0111 11122211 111111111 1247799999998 789999999
Q ss_pred HHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 149 ~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++.+.+... +..+|++|++.+.+ . ..+|+.
T Consensus 178 ~l~~~l~~l~~~~g~tiil~sH~~~~~-~-~~d~i~ 211 (277)
T PRK13642 178 EIMRVIHEIKEKYQLTVLSITHDLDEA-A-SSDRIL 211 (277)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHH-H-hCCEEE
Confidence 99999987643 56788888877754 2 356653
No 444
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=6.2e-08 Score=87.55 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=40.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+.+ . ..+|+.++
T Consensus 160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~-~~d~i~~l 216 (282)
T PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-N-MADQVLVL 216 (282)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence 47899999998 88999999999999987643 46777788776654 3 46666443
No 445
>PF05729 NACHT: NACHT domain
Probab=98.66 E-value=3e-07 Score=75.95 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=48.1
Q ss_pred CceEEEEeCCCCCCHHHH--------HHHHHHHhh-hcCceeEEEEecCCCc-ccHHHhccceeEEecCCCHHHHHHHHH
Q 017844 130 GFKVLVLNEVDKLSREAQ--------HSLRRTMEK-YSASCRLILCCNSSSK-VTEAIRSRCLNIRINSPTEEQIVKVLE 199 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~--------~~Ll~~le~-~~~~~~~Il~t~~~~~-l~~~l~sR~~~i~~~~~~~~~~~~iL~ 199 (365)
+.-++|||-+|.+..... ..+...+.. .+.++++++++..... -..........+.+.+++.+++.++++
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 446899999988765322 234455554 3557888888765442 112222223578999999999999998
Q ss_pred HHHH
Q 017844 200 FIAK 203 (365)
Q Consensus 200 ~~~~ 203 (365)
+.++
T Consensus 161 ~~f~ 164 (166)
T PF05729_consen 161 KYFS 164 (166)
T ss_pred HHhh
Confidence 8764
No 446
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=4e-08 Score=87.46 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=40.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+...+..+|++|++.+. ...+.+|+.++
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~-~~~~~d~i~~l 222 (254)
T PRK14273 167 IEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQ-AGRISDRTAFF 222 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 37899999998 789999999999999887555667777776553 34455666443
No 447
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=5.6e-08 Score=86.50 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=40.4
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+......+|+++++.+. ...+.+|+..+
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~-~~~~~d~v~~l 221 (253)
T PRK14242 166 VEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQ-AARVSDVTAFF 221 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH-HHHhCCEEEEE
Confidence 47899999998 789999999999999887545566677766553 34455665443
No 448
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=7.2e-08 Score=87.50 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=40.0
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|+.++
T Consensus 167 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~-~~~~~d~i~~l 224 (289)
T PRK13645 167 MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ-VLRIADEVIVM 224 (289)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence 37889999998 88999999999999887642 4567777776553 34455665433
No 449
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=9.8e-08 Score=85.66 Aligned_cols=56 Identities=9% Similarity=0.167 Sum_probs=41.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~ 185 (365)
.+++++++||+ ..|+......+.+.+.+...+..+|++|++.+. ...+.+|..++.
T Consensus 171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~-~~~~~d~i~~l~ 227 (269)
T PRK14259 171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQ-AVRVSDMTAFFN 227 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEe
Confidence 47899999998 889999999999999887555667777776543 344555554443
No 450
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=9.8e-08 Score=85.50 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=39.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+..+...+.+.+.+... +..+|++|++.+. ...+.+|+.++
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~-i~~~~d~i~~l 221 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM-AARYCDYLVAL 221 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 47899999998 78999999999999887642 4567777776553 33455665433
No 451
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.64 E-value=2.4e-08 Score=98.49 Aligned_cols=135 Identities=16% Similarity=0.268 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.++.|+. +.+.||+|+||||+++.+++ +..++.|.+.+++.+... - .. .+ ...+.+.++
T Consensus 350 vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~i~g~~i~~-~-~~-------~l--r~~i~~V~Q 415 (529)
T TIGR02868 350 VLDGVSLDLPPGER--VAILGPSGSGKSTLLMLLTG-LLDPLQGEVTLDGVSVSS-L-QD-------EL--RRRISVFAQ 415 (529)
T ss_pred eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhhh-H-HH-------HH--HhheEEEcc
Confidence 44444444555555 99999999999999999998 678888989888855410 0 00 00 001222222
Q ss_pred CcCc---------------cchhHHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEe
Q 017844 101 DAGF---------------QDRYVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLN 137 (365)
Q Consensus 101 ~~~~---------------~~~~~~~~~l~~~-----~~~~~-----------~~~~~------------~~~~~vliiD 137 (365)
+... .+...+.+.++.. ....| ..+|+ -.+++|+++|
T Consensus 416 ~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLD 495 (529)
T TIGR02868 416 DAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 495 (529)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2110 0111122222211 00000 01111 2378899999
Q ss_pred CC-CCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844 138 EV-DKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (365)
Q Consensus 138 E~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~ 169 (365)
|+ ..|+.+....+.+.+.+..++..+|++|++
T Consensus 496 E~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 496 EPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 99 789999999999999887666778888775
No 452
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=1.1e-07 Score=86.13 Aligned_cols=160 Identities=18% Similarity=0.326 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC-----cceeccccc----c--
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDLELTT----L-- 89 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~----~-- 89 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++......+.. ....+.+.. .
T Consensus 22 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 22 ALDNVNIEIEDGEF--VGLIGHTGSGKSTLIQHLNG-LLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98 (287)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence 44444445555655 99999999999999999998 6678888888887554110000 000000000 0
Q ss_pred -ccccceecCCCCcCccch---hHHHHHHHHHHhc-------CCCCCCC------------CCCceEEEEeCC-CCCCHH
Q 017844 90 -SSANHVELSPSDAGFQDR---YVVQEVIKEMAKN-------RPIDTKG------------KRGFKVLVLNEV-DKLSRE 145 (365)
Q Consensus 90 -~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-------~~~~~~~------------~~~~~vliiDE~-~~L~~~ 145 (365)
+..+.+.+.....+.... ..+.+.++.+.-. .+..+|+ ..+++++++||+ ..|+..
T Consensus 99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~ 178 (287)
T PRK13637 99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178 (287)
T ss_pred ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence 000000000000011100 0122233322110 0111111 237899999998 789999
Q ss_pred HHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 146 AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 146 ~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+..+++.+.+... +..+|++|++.+. ...+.+|+.++
T Consensus 179 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~drv~~l 218 (287)
T PRK13637 179 GRDEILNKIKELHKEYNMTIILVSHSMED-VAKLADRIIVM 218 (287)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 99999999987643 4567777776553 34456776443
No 453
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.5e-08 Score=97.84 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC----cceeccccc------c
Q 017844 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT------L 89 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~------~ 89 (365)
.+++.+...+..|.. +.|.||+|+|||||++++++ +..+..|.+.+++..+...+.. ....+.+.. .
T Consensus 19 ~il~~vs~~i~~Ge~--~~liG~nGsGKSTLl~~i~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 19 HALKSVNLTVYPGEI--HALLGENGAGKSTLMKVLSG-IHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred EEeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 344555555555655 89999999999999999998 5567778887777543110100 000000000 0
Q ss_pred ccccceecCCCC----cCc--cch----hHHHHHHHHHHhcC-----CCCCC------------CCCCceEEEEeCC-CC
Q 017844 90 SSANHVELSPSD----AGF--QDR----YVVQEVIKEMAKNR-----PIDTK------------GKRGFKVLVLNEV-DK 141 (365)
Q Consensus 90 ~~~~~~~~~~~~----~~~--~~~----~~~~~~l~~~~~~~-----~~~~~------------~~~~~~vliiDE~-~~ 141 (365)
+..+.+.+.... .+. ... ..+.+.++.+.-.. ...+| ...+++++++||+ ..
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~ 175 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSS 175 (510)
T ss_pred cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 000111110000 000 000 11222222221100 00111 1247899999998 88
Q ss_pred CCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844 142 LSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 142 L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
|+......+.+.|.+... +..+|++|++.. ....+.+|+.
T Consensus 176 LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~ 216 (510)
T PRK09700 176 LTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYT 216 (510)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 999999999999887643 345666666544 3345556654
No 454
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.64 E-value=8.4e-08 Score=86.06 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=39.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+...+..+.+.+++... +..+|++|++.+ ....+.+|+..
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~ 224 (268)
T PRK10419 168 VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMV 224 (268)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEE
Confidence 47899999998 78999999999999987643 456777777755 33445555543
No 455
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=1e-07 Score=86.26 Aligned_cols=159 Identities=15% Similarity=0.263 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC-------cceeccccc----c
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-------RNIDLELTT----L 89 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~----~ 89 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..++.|.+.+++......+.. ....+.+.. +
T Consensus 22 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~L~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (286)
T PRK13646 22 AIHDVNTEFEQGKY--YAIVGQTGSGKSTLIQNINA-LLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98 (286)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence 44444444555555 89999999999999999998 6678888888877544110000 000000000 0
Q ss_pred ---ccccceecCCCCcCccch---hHHHHHHHHHHh------cCCCCCC------------CCCCceEEEEeCC-CCCCH
Q 017844 90 ---SSANHVELSPSDAGFQDR---YVVQEVIKEMAK------NRPIDTK------------GKRGFKVLVLNEV-DKLSR 144 (365)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~------~~~~~~~------------~~~~~~vliiDE~-~~L~~ 144 (365)
+..+.+.+.....+.... ..+.+.++.+.- ..+..+| ...+++++++||+ ..|++
T Consensus 99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 000001110000011100 011222222211 0111111 1247899999998 88999
Q ss_pred HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhcccee
Q 017844 145 EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 145 ~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.....+++++.+.. .+..+|++|++.+.+ ..+.+|+.+
T Consensus 179 ~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~-~~~~dri~~ 218 (286)
T PRK13646 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEV-ARYADEVIV 218 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HHhCCEEEE
Confidence 99999999998764 246777777776643 344566643
No 456
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.64 E-value=4.6e-08 Score=87.01 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=40.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.|.+...+..+|++|++.+. ...+.+|+.+
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~-~~~~~d~i~~ 219 (252)
T PRK14239 165 TSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQ-ASRISDRTGF 219 (252)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHH-HHHhCCEEEE
Confidence 47799999998 789999999999999887555667777776553 3344566543
No 457
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.64 E-value=1.9e-07 Score=82.20 Aligned_cols=158 Identities=18% Similarity=0.245 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc------eec---ccccccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN------IDL---ELTTLSS 91 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~------~~~---~~~~~~~ 91 (365)
+++.+.-.+..|.. +.+.|.+|.|||||+|++-. |..|+.+.+.+++.+...-+.... .-+ .|+.+++
T Consensus 21 al~~vsL~I~~GeI--~GIIG~SGAGKSTLiR~iN~-Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss 97 (339)
T COG1135 21 ALDDVSLEIPKGEI--FGIIGYSGAGKSTLLRLINL-LERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS 97 (339)
T ss_pred eeccceEEEcCCcE--EEEEcCCCCcHHHHHHHHhc-cCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc
Confidence 44555555666766 89999999999999999976 889999999999865411110000 000 0011111
Q ss_pred cccee---cCCCCcCccchhHHHHHHHHHHhc---------CCCCCCC------------CCCceEEEEeCC-CCCCHHH
Q 017844 92 ANHVE---LSPSDAGFQDRYVVQEVIKEMAKN---------RPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (365)
Q Consensus 92 ~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~------------~~~~~vliiDE~-~~L~~~~ 146 (365)
....+ +.-.-.+ .++..+++-..++... .|..+|+ ..+|+|++.||+ ..|+++.
T Consensus 98 rTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~T 176 (339)
T COG1135 98 RTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176 (339)
T ss_pred chHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHH
Confidence 11111 1000011 1122222222222211 1222232 347899999999 7899999
Q ss_pred HHHHHHHHhhh--cCceeEEEEecCCCcccHHHhcccee
Q 017844 147 QHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 147 ~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
...++..|.+. .-+..++++|+..+ +...+.+|..+
T Consensus 177 T~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVav 214 (339)
T COG1135 177 TQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAV 214 (339)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheE
Confidence 88888888764 23466777776544 66777787644
No 458
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.3e-07 Score=84.79 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=40.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+......+|++|++.+. ...+.+|+.+
T Consensus 180 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~-~~~~~d~i~~ 234 (267)
T PRK14237 180 VKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQ-AARASDYTAF 234 (267)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCEEEE
Confidence 37899999998 789999999999999887555667777776553 3445566543
No 459
>PRK10536 hypothetical protein; Provisional
Probab=98.63 E-value=5.2e-07 Score=78.64 Aligned_cols=134 Identities=13% Similarity=0.223 Sum_probs=71.1
Q ss_pred cccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc-CCCCccceeccccceecCCCcceecccccccccc
Q 017844 15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN 93 (365)
Q Consensus 15 iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (365)
+.+.......+..++.... .++++||+|||||+++.+++.... ......+.+.. ..+...+
T Consensus 57 i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~R----------------P~v~~ge 118 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTR----------------PVLQADE 118 (262)
T ss_pred ccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeC----------------CCCCchh
Confidence 4445555556666776644 499999999999999999988533 33333232221 1122233
Q ss_pred ceecCCCCcCcc-ch--hHHHHHHHHH---------Hh--cCCC---CCC---C-CCCceEEEEeCCCCCCHHHHHHHHH
Q 017844 94 HVELSPSDAGFQ-DR--YVVQEVIKEM---------AK--NRPI---DTK---G-KRGFKVLVLNEVDKLSREAQHSLRR 152 (365)
Q Consensus 94 ~~~~~~~~~~~~-~~--~~~~~~l~~~---------~~--~~~~---~~~---~-~~~~~vliiDE~~~L~~~~~~~Ll~ 152 (365)
.+.+.|.+..-. .. ..+.+.+..+ .. ...+ .+. + .-...++|+||++++++.....++.
T Consensus 119 ~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt 198 (262)
T PRK10536 119 DLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT 198 (262)
T ss_pred hhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh
Confidence 344444432100 00 0111111111 00 0000 000 0 0134799999999999876665554
Q ss_pred HHhhhcCceeEEEEecC
Q 017844 153 TMEKYSASCRLILCCNS 169 (365)
Q Consensus 153 ~le~~~~~~~~Il~t~~ 169 (365)
-+ ..+.++|++.+.
T Consensus 199 R~---g~~sk~v~~GD~ 212 (262)
T PRK10536 199 RL---GENVTVIVNGDI 212 (262)
T ss_pred hc---CCCCEEEEeCCh
Confidence 44 457888888764
No 460
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.63 E-value=6.1e-08 Score=86.09 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=39.9
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+......+|++|++.+ ....+.+|+.+
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~v~~ 217 (250)
T PRK14240 163 VEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQ-QASRISDKTAF 217 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHH-HHHhhCCEEEE
Confidence 47899999998 78999999999999987755566777777655 33445566543
No 461
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=4.9e-06 Score=87.59 Aligned_cols=213 Identities=14% Similarity=0.147 Sum_probs=116.6
Q ss_pred CCcccccC-CCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 1 MLWVDKYR-PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 1 ~~w~~k~r-P~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
|+-.-|+. |..-.+++-.+...+.+... ...+-++++||+|.||||++..++... . ....+.....-.+|..
T Consensus 1 ~~~~~k~~~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~-~---~~~w~~l~~~d~~~~~ 73 (903)
T PRK04841 1 MLIPSKLSRPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK-N---NLGWYSLDESDNQPER 73 (903)
T ss_pred CCcccccCCCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC-C---CeEEEecCcccCCHHH
Confidence 44445664 55567778788777766432 223339999999999999998877532 1 1111111000000000
Q ss_pred cceeccccccccccceecCCC------CcCccc-hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH-HHHHH
Q 017844 80 RNIDLELTTLSSANHVELSPS------DAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QHSLR 151 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~-~~~Ll 151 (365)
-...+ ...+... .....+. ..+... ...+..++..+.. ...+-++||||+|.++... ...+.
T Consensus 74 f~~~l-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~lvlDD~h~~~~~~~~~~l~ 143 (903)
T PRK04841 74 FASYL-IAALQQA-TNGHCSKSEALAQKRQYASLSSLFAQLFIELAD--------WHQPLYLVIDDYHLITNPEIHEAMR 143 (903)
T ss_pred HHHHH-HHHHHHh-cCcccchhhhhhccCCcCCHHHHHHHHHHHHhc--------CCCCEEEEEeCcCcCCChHHHHHHH
Confidence 00000 0000000 0000000 000000 0112222232221 2355799999999997544 44666
Q ss_pred HHHhhhcCceeEEEEecCCCcc-cHHHhccceeEEec----CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 017844 152 RTMEKYSASCRLILCCNSSSKV-TEAIRSRCLNIRIN----SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226 (365)
Q Consensus 152 ~~le~~~~~~~~Il~t~~~~~l-~~~l~sR~~~i~~~----~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr 226 (365)
.+++..+.+..+|+++.....+ ...++-+-..+.+. +++.++...++...+ |..++++.+..+.+.++|.+-
T Consensus 144 ~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 144 FFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWAT 220 (903)
T ss_pred HHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHH
Confidence 6677777888888887764433 22333233344444 889999999997543 677899999999999999986
Q ss_pred HHHHHHH
Q 017844 227 RAILSFE 233 (365)
Q Consensus 227 ~ai~~l~ 233 (365)
-..-+..
T Consensus 221 ~l~l~~~ 227 (903)
T PRK04841 221 ALQLIAL 227 (903)
T ss_pred HHHHHHH
Confidence 5543333
No 462
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.6e-07 Score=83.41 Aligned_cols=54 Identities=7% Similarity=0.111 Sum_probs=40.4
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+..+...+.+.+.+......+|++|++.+ ....+.+|+.+
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~-~~~~~~d~v~~ 218 (251)
T PRK14270 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQ-QASRVSDYTAF 218 (251)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHH-HHHHhcCEEEE
Confidence 47899999998 88999999999999988755556777776654 33455566643
No 463
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.5e-07 Score=84.12 Aligned_cols=55 Identities=9% Similarity=0.201 Sum_probs=41.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+...+..+|+++++.+. ...+.+|+..+
T Consensus 172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~-~~~~~d~i~~l 227 (259)
T PRK14274 172 TNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQ-AARVSDQTAFF 227 (259)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH-HHHhCCEEEEE
Confidence 47899999998 789999999999999887655667777777653 34455665433
No 464
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.63 E-value=1.5e-07 Score=83.83 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=39.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+.+ ..+.+|+..
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~-~~~~d~v~~ 213 (254)
T PRK10418 157 CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVV-ARLADDVAV 213 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH-HHhCCEEEE
Confidence 47899999998 78999999999998887632 45677777765543 344566543
No 465
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.63 E-value=2.8e-08 Score=78.88 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=29.1
Q ss_pred eEEEEeCCCCC-CHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844 132 KVLVLNEVDKL-SREAQHSLRRTMEKYSASCRLILCCNS 169 (365)
Q Consensus 132 ~vliiDE~~~L-~~~~~~~Ll~~le~~~~~~~~Il~t~~ 169 (365)
.+++|||+|.+ +.+..+.|..+.+ ..++.+|++++.
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 69999999999 8777777777666 457888888876
No 466
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=5.1e-08 Score=86.88 Aligned_cols=55 Identities=7% Similarity=0.172 Sum_probs=41.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+..+...+.+.+.+......+|++|++.. ..+.+.+|+..+
T Consensus 170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~-~~~~~~d~v~~l 225 (257)
T PRK14246 170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ-QVARVADYVAFL 225 (257)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHH-HHHHhCCEEEEE
Confidence 47899999998 78999999999999987755567777777655 344555665433
No 467
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=5.2e-08 Score=86.52 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=40.7
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+......+|++|++.+ ....+.+|+.+
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~-~~~~~~d~i~~ 216 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQ-QARRISDRTAF 216 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEE
Confidence 47899999998 78999999999999988765566777777655 34455566543
No 468
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=1e-07 Score=87.41 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
+++.+.-.+..|.. +.|.||+|+|||||++++++ +..+..|.+.+++..+
T Consensus 41 ~L~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~L~G-l~~p~~G~I~i~g~~~ 90 (320)
T PRK13631 41 ALNNISYTFEKNKI--YFIIGNSGSGKSTLVTHFNG-LIKSKYGTIQVGDIYI 90 (320)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCCeEEECCEEc
Confidence 44444444555555 99999999999999999998 6678888888877543
No 469
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.62 E-value=8.9e-08 Score=88.26 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=84.2
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (365)
++.+.-.+..|.. +.|.|++|+||||++++|++ +..+..+.+.+++... ...... +. ... ...+.+..++
T Consensus 37 l~~vsl~i~~Ge~--~~lvG~sGsGKSTLlk~i~G-l~~p~~G~I~~~G~~i-~~~~~~--~~--~~~--r~~i~~v~Q~ 106 (331)
T PRK15079 37 VDGVTLRLYEGET--LGVVGESGCGKSTFARAIIG-LVKATDGEVAWLGKDL-LGMKDD--EW--RAV--RSDIQMIFQD 106 (331)
T ss_pred EeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHHC-CCCCCCcEEEECCEEC-CcCCHH--HH--HHH--hCceEEEecC
Confidence 3444444455555 99999999999999999998 5677788888877654 110000 00 000 0001111111
Q ss_pred c--Cc--------------------cch----hHHHHHHHHHH------hcCCCCCC------------CCCCceEEEEe
Q 017844 102 A--GF--------------------QDR----YVVQEVIKEMA------KNRPIDTK------------GKRGFKVLVLN 137 (365)
Q Consensus 102 ~--~~--------------------~~~----~~~~~~l~~~~------~~~~~~~~------------~~~~~~vliiD 137 (365)
. .. ... ..+.+.++.+. ...+..+| ...+++++|+|
T Consensus 107 ~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD 186 (331)
T PRK15079 107 PLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD 186 (331)
T ss_pred chhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0 00 010 01122222211 11111122 12478999999
Q ss_pred CC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 138 EV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 138 E~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
|+ ..|+...+..+++.|.+... +..+|++|++.. ....+.+|+.++
T Consensus 187 EPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl 235 (331)
T PRK15079 187 EPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVM 235 (331)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 98 78999999999999887643 466777777655 334455666433
No 470
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=1.6e-07 Score=83.43 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=41.0
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+..+...+.+.+++......+|++|++.+. ...+.+|+.++
T Consensus 165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~-~~~~~d~i~~l 220 (252)
T PRK14256 165 VKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ-AARVSDYTAFF 220 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHH-HHhhCCEEEEE
Confidence 47799999998 889999999999999887655667777776553 34555666433
No 471
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=3.6e-08 Score=89.03 Aligned_cols=158 Identities=17% Similarity=0.263 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-----Ccceeccccc----cc-
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-----SRNIDLELTT----LS- 90 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~----~~- 90 (365)
+++.+.-.+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++... .... .+...+.+.. ..
T Consensus 25 vl~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~i~g~~i-~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (280)
T PRK13633 25 ALDDVNLEVKKGEF--LVILGRNGSGKSTIAKHMNA-LLIPSEGKVYVDGLDT-SDEENLWDIRNKAGMVFQNPDNQIVA 100 (280)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEec-cccccHHHHhhheEEEecChhhhhcc
Confidence 45555445555655 89999999999999999998 5577788888877554 1100 0000000000 00
Q ss_pred --cccceecCCCCcCccc---hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHH
Q 017844 91 --SANHVELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQ 147 (365)
Q Consensus 91 --~~~~~~~~~~~~~~~~---~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~ 147 (365)
..+.+.+.....+... ...+.+.++.+. ...+..+| ...+++++++||+ ..|+...+
T Consensus 101 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~ 180 (280)
T PRK13633 101 TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGR 180 (280)
T ss_pred ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 0000000000001000 011122222211 11111111 1247899999998 88999999
Q ss_pred HHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 148 ~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
..+.+.+.+... +..+|++|++.+.+ .. .+|+.++
T Consensus 181 ~~l~~~l~~l~~~~g~tillvtH~~~~~-~~-~d~v~~l 217 (280)
T PRK13633 181 REVVNTIKELNKKYGITIILITHYMEEA-VE-ADRIIVM 217 (280)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecChHHH-hc-CCEEEEE
Confidence 999999987642 56777788777754 33 5665433
No 472
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.62 E-value=2.4e-08 Score=84.78 Aligned_cols=55 Identities=22% Similarity=0.357 Sum_probs=44.9
Q ss_pred ccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 16 ig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
.|+..+.+.+.-.+.+|+. +.+.||+|+||||+.|.+.+ +..|+.+.+.+.+.++
T Consensus 18 fG~~~Ild~v~l~V~~Gei--~~iiGgSGsGKStlLr~I~G-ll~P~~GeI~i~G~~i 72 (263)
T COG1127 18 FGDRVILDGVDLDVPRGEI--LAILGGSGSGKSTLLRLILG-LLRPDKGEILIDGEDI 72 (263)
T ss_pred cCCEEEecCceeeecCCcE--EEEECCCCcCHHHHHHHHhc-cCCCCCCeEEEcCcch
Confidence 3556666666666667766 89999999999999999999 7789999999888765
No 473
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=6.8e-08 Score=86.71 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=40.0
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+......+|++|++.+. ...+.+|+.+
T Consensus 181 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~-~~~~~d~v~~ 235 (268)
T PRK14248 181 MKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQ-ALRVSDRTAF 235 (268)
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHH-HHHhCCEEEE
Confidence 47899999998 889999999999999877545567777777553 3445566543
No 474
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.61 E-value=1e-07 Score=84.43 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=39.1
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
+++++++||+ ..|+......+.+.|.+... +..+|++|++.+. ...+.+|+.++
T Consensus 151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l 206 (248)
T PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH-TLRHADRVWLL 206 (248)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEE
Confidence 4589999998 88999999999999987643 4567777776553 34455665433
No 475
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.61 E-value=9.1e-08 Score=91.38 Aligned_cols=155 Identities=19% Similarity=0.300 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC-----cceeccccccccccc
Q 017844 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDLELTTLSSANH 94 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 94 (365)
.+++.+...+..|.. +-|.|++||||||+++++++ +..|..+.+.+++.++..+... ....+ .+..+ +
T Consensus 305 ~Av~~VSf~l~~GE~--lglVGeSGsGKSTlar~i~g-L~~P~~G~i~~~g~~~~~~~~~~~~~r~~~Qm---vFQdp-~ 377 (539)
T COG1123 305 KAVDDVSFDLREGET--LGLVGESGSGKSTLARILAG-LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQM---VFQDP-Y 377 (539)
T ss_pred eeeeeeeeEecCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEEeCcccccccchhhhhhhheEE---EEeCc-c
Confidence 444555555666666 89999999999999999999 6778888888877542111000 00000 00000 0
Q ss_pred eecCCC---------CcC-------ccchhHHHHHHHHH------HhcCCCCCCC------------CCCceEEEEeCC-
Q 017844 95 VELSPS---------DAG-------FQDRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV- 139 (365)
Q Consensus 95 ~~~~~~---------~~~-------~~~~~~~~~~l~~~------~~~~~~~~~~------------~~~~~vliiDE~- 139 (365)
..+++. ... ...+..+.++++.. ....|..+|+ ..+++++|.||+
T Consensus 378 ~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~ 457 (539)
T COG1123 378 SSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPV 457 (539)
T ss_pred cccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCc
Confidence 011110 000 00011122222221 1222223332 237899999997
Q ss_pred CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 140 ~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
..|+...+...+++|.+... +..++|+|++.. +...+.+|..
T Consensus 458 SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~ 501 (539)
T COG1123 458 SALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVA 501 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEE
Confidence 88999998888888876543 478999998765 3455666653
No 476
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.61 E-value=1.6e-07 Score=83.77 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=38.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|+......+.+.+.+... +..+|++|++.+.+ ..+.+|+.
T Consensus 168 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~-~~~~d~i~ 223 (258)
T PRK11701 168 THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA-RLLAHRLL 223 (258)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH-HHhcCEEE
Confidence 37899999998 78999999999999887543 45667777665533 34455654
No 477
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.61 E-value=1.1e-07 Score=82.22 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=44.0
Q ss_pred CCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeEEecC
Q 017844 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIRINS 188 (365)
Q Consensus 128 ~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~ 188 (365)
-.+++|+++||+ =.|+-.++..+++++.++. ..+.++++|+.... ..++..|...|.-..
T Consensus 172 Lh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~d-i~~lc~rv~~I~~Gq 234 (325)
T COG4586 172 LHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDD-IATLCDRVLLIDQGQ 234 (325)
T ss_pred cCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhh-HHHhhhheEEeeCCc
Confidence 357899999998 5789999999999998763 35667777766554 367777776655443
No 478
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.60 E-value=2.4e-07 Score=73.77 Aligned_cols=187 Identities=15% Similarity=0.253 Sum_probs=101.5
Q ss_pred CCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce--ecCCCcce----
Q 017844 9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK--IDAGSRNI---- 82 (365)
Q Consensus 9 P~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~--~~~~~~~~---- 82 (365)
-+++.-++|...++-.+.-....|.. +++.||+|.|||++.|.+-- +.-+..+...+.+..|. ..|.++..
T Consensus 5 v~~in~~yg~~q~lfdi~l~~~~get--lvllgpsgagkssllr~lnl-le~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 5 LNGINCFYGAHQALFDITLDCPEGET--LVLLGPSGAGKSSLLRVLNL-LEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred EcccccccccchheeeeeecCCCCCE--EEEECCCCCchHHHHHHHHH-HhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 34566677776666555444444544 89999999999999998853 66677777766665541 22222110
Q ss_pred -ec--cc---cccccccc----eecCCCCcCccchhH---HHHHHHHH-----HhcCCCCCCCC------------CCce
Q 017844 83 -DL--EL---TTLSSANH----VELSPSDAGFQDRYV---VQEVIKEM-----AKNRPIDTKGK------------RGFK 132 (365)
Q Consensus 83 -~~--~~---~~~~~~~~----~~~~~~~~~~~~~~~---~~~~l~~~-----~~~~~~~~~~~------------~~~~ 132 (365)
++ .+ ..|..-.. ++-.+.-.+..+... ..++++.+ +...|+.+++. -++.
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 00 00 00000000 000000111111111 12222222 22233333332 2678
Q ss_pred EEEEeCC-CCCCHHHHHHHHHHHhhhcCcee-EEEEecCCCcccHHHhccce------e------EEecCCCHHHHHHHH
Q 017844 133 VLVLNEV-DKLSREAQHSLRRTMEKYSASCR-LILCCNSSSKVTEAIRSRCL------N------IRINSPTEEQIVKVL 198 (365)
Q Consensus 133 vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~-~Il~t~~~~~l~~~l~sR~~------~------i~~~~~~~~~~~~iL 198 (365)
|+++||+ -.|+++..+...+++.+...... -+++|+.. .+...+.+|.. + -.|..|..++...+|
T Consensus 162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~~ft~p~te~f~~yl 240 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNYL 240 (242)
T ss_pred EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchhhccCccHHHHHHHh
Confidence 9999998 67899999999999998866543 44444443 34445556642 2 237777777777665
Q ss_pred H
Q 017844 199 E 199 (365)
Q Consensus 199 ~ 199 (365)
.
T Consensus 241 s 241 (242)
T COG4161 241 S 241 (242)
T ss_pred c
Confidence 4
No 479
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.60 E-value=3.7e-07 Score=80.81 Aligned_cols=105 Identities=19% Similarity=0.328 Sum_probs=58.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHH
Q 017844 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE 112 (365)
Q Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (365)
+..+++|+||+|+|||++|-+|+.++.........+.. ++.+.-....... .....+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~---------------------~el~~~Lk~~~~~--~~~~~~ 160 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA---------------------PDLLSKLKAAFDE--GRLEEK 160 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH---------------------HHHHHHHHHHHhc--CchHHH
Confidence 33449999999999999999999998632221111111 0001000000000 000001
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEeCCCC--CCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~vliiDE~~~--L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
+.+. -.+.+++||||+.. ++....+.+++++.........++++|.+.
T Consensus 161 l~~~-----------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 161 LLRE-----------LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred HHHH-----------hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 1111 13458999999865 566667778887776544434488887654
No 480
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.2e-07 Score=81.49 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=72.6
Q ss_pred CceEEEEeCCCCCC------------HHHHHHHHHHHhhhc----------CceeEEEEe----cCCCcccHHHhccce-
Q 017844 130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYS----------ASCRLILCC----NSSSKVTEAIRSRCL- 182 (365)
Q Consensus 130 ~~~vliiDE~~~L~------------~~~~~~Ll~~le~~~----------~~~~~Il~t----~~~~~l~~~l~sR~~- 182 (365)
+..|+||||+|.+. ...|..||.++|... .++.||... ..|+.+.|.+.-|+-
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 45799999999773 235677888887421 122233332 245679999999995
Q ss_pred eEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHH
Q 017844 183 NIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETC 235 (365)
Q Consensus 183 ~i~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~~~~i~~~~--------~g~lr~ai~~l~~~ 235 (365)
.+++.+++.++..++|.. .++.+|+ .+++++++.||+.+ +=..|++-..++.+
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 899999999999999753 2223555 57899999999853 12346665555544
No 481
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.60 E-value=1.4e-07 Score=84.45 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=39.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|+......+.+.+.+... ...+|++|++.+. ...+.+|+.
T Consensus 169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~ 224 (262)
T PRK09984 169 QQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIV 224 (262)
T ss_pred cCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEE
Confidence 47899999998 88999999999999988743 4667777777653 334556654
No 482
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=6.1e-08 Score=86.20 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=40.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+......+|++|++.+ ....+.+|+..+
T Consensus 165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 220 (252)
T PRK14272 165 VEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH-QAARVSDTTSFF 220 (252)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 47799999998 78999999999999988755566777777655 334455666433
No 483
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.60 E-value=3.7e-08 Score=88.35 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=40.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++|+++||+ ..|+......+.+.+.+...+..+|+++++.+.+ .. .+|+.+
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i-~~-~dri~v 208 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAM-LE-CQRFLV 208 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-Hh-CCEEEE
Confidence 47899999998 8899999988999988765567788888887543 22 566643
No 484
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.59 E-value=3e-08 Score=96.89 Aligned_cols=158 Identities=14% Similarity=0.225 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC----Ccceeccccc------cc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLELTT------LS 90 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~------~~ 90 (365)
+++.+.-.+..|.. +.|.||+|+|||||++++++ +..+..|.+.+++..+...+. .....+.... .+
T Consensus 13 il~~vs~~i~~Ge~--~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 13 ALDNVNLKVRPHSI--HALMGENGAGKSTLLKCLFG-IYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred eeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 34444444555555 89999999999999999998 567778888877754310000 0000000000 00
Q ss_pred cccceecCCCC-cCc-cchh----HHHHHHHHHHhcC-----CCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844 91 SANHVELSPSD-AGF-QDRY----VVQEVIKEMAKNR-----PIDTK------------GKRGFKVLVLNEV-DKLSREA 146 (365)
Q Consensus 91 ~~~~~~~~~~~-~~~-~~~~----~~~~~l~~~~~~~-----~~~~~------------~~~~~~vliiDE~-~~L~~~~ 146 (365)
..+.+.+.... .+. .+.. .+.+.++.+.-.. ...+| ...+++++|+||+ ..|+...
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 00011110000 000 0101 1222222221100 00111 1237899999998 7899999
Q ss_pred HHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 147 ~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
...+.+.+.+... +..+|++|++.+. ...+.+|+.
T Consensus 170 ~~~l~~~l~~l~~~g~tvii~tH~~~~-~~~~~d~i~ 205 (491)
T PRK10982 170 VNHLFTIIRKLKERGCGIVYISHKMEE-IFQLCDEIT 205 (491)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEE
Confidence 9999998887643 3556777766543 334555553
No 485
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=1.4e-07 Score=86.04 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=39.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|++.....+++.+.+... ...+|++|++.+.+ ..+.+|+.
T Consensus 182 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~-~~~adrv~ 236 (305)
T PRK13651 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV-LEWTKRTI 236 (305)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHH-HHhCCEEE
Confidence 37899999998 78999999999999987643 45677777765533 34556654
No 486
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=2.7e-07 Score=82.00 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=40.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.|.+...+..+|++|++.+. ...+.+|+.+
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~-~~~~~d~i~~ 220 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQ-AKKVSDRVAF 220 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhcCEEEE
Confidence 47799999998 789999999999999877555667777776653 3445566543
No 487
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=5.9e-08 Score=86.23 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=41.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+..+...+.+.+.+......+|++|++.+. ...+.+|+.++
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~-~~~~~d~i~~l 219 (251)
T PRK14251 164 VRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQ-AGRISDQTAFL 219 (251)
T ss_pred cCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHH-HHhhcCEEEEE
Confidence 47899999998 789999999999999887555667777776553 34445666443
No 488
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.58 E-value=7.3e-08 Score=96.26 Aligned_cols=138 Identities=16% Similarity=0.236 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.++.|+. +.+.||+|+||||+++.+++ +..+..|.+.+++.+........ -...+.+.++
T Consensus 358 il~~i~l~i~~G~~--~aIvG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~----------~~~~i~~v~Q 424 (582)
T PRK11176 358 ALRNINFKIPAGKT--VALVGRSGSGKSTIANLLTR-FYDIDEGEILLDGHDLRDYTLAS----------LRNQVALVSQ 424 (582)
T ss_pred cccCceEEeCCCCE--EEEECCCCCCHHHHHHHHHh-ccCCCCceEEECCEEhhhcCHHH----------HHhhceEEcc
Confidence 34444444444544 99999999999999999999 67888898888886541100000 0001111111
Q ss_pred Cc----------------CccchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEE
Q 017844 101 DA----------------GFQDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVL 136 (365)
Q Consensus 101 ~~----------------~~~~~~~~~~~l~~~-----~~~~~~-----------~~~~------------~~~~~vlii 136 (365)
+. ...+...+.+.++.. ....+. .+|+ -.+++|+++
T Consensus 425 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ilil 504 (582)
T PRK11176 425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL 504 (582)
T ss_pred CceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 11 001111222222221 111110 0111 136789999
Q ss_pred eCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 137 DE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
||+ ..|+++....+.+.+.+...+..+|++|++.+
T Consensus 505 DEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 505 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred ECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 999 88999999999999988766778888888764
No 489
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.58 E-value=7.6e-08 Score=96.25 Aligned_cols=130 Identities=16% Similarity=0.227 Sum_probs=77.2
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCc---
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF--- 104 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 104 (365)
.++.|+. +.+.||+|+||||+++.+++. . |..|.+.+++.+....+. ..-...+.+.+++...
T Consensus 372 ~i~~G~~--vaIvG~SGsGKSTL~~lL~g~-~-p~~G~I~i~g~~i~~~~~----------~~lr~~i~~v~Q~~~LF~~ 437 (588)
T PRK11174 372 TLPAGQR--IALVGPSGAGKTSLLNALLGF-L-PYQGSLKINGIELRELDP----------ESWRKHLSWVGQNPQLPHG 437 (588)
T ss_pred EEcCCCE--EEEECCCCCCHHHHHHHHhcC-C-CCCcEEEECCEecccCCH----------HHHHhheEEecCCCcCCCc
Confidence 3344444 999999999999999999994 4 778888888865410000 0000112222222110
Q ss_pred ------------cchhHHHHHHHHH-----HhcCC------C-----CCCC------------CCCceEEEEeCC-CCCC
Q 017844 105 ------------QDRYVVQEVIKEM-----AKNRP------I-----DTKG------------KRGFKVLVLNEV-DKLS 143 (365)
Q Consensus 105 ------------~~~~~~~~~l~~~-----~~~~~------~-----~~~~------------~~~~~vliiDE~-~~L~ 143 (365)
.+...+.+.++.. ....| + .+|+ -.+++|+++||+ ..|+
T Consensus 438 TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD 517 (588)
T PRK11174 438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517 (588)
T ss_pred CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 1111122222211 01010 0 1111 136799999999 7899
Q ss_pred HHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 144 REAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 144 ~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.+....+.+.+.+...+..+|++|++.+
T Consensus 518 ~~te~~i~~~l~~~~~~~TvIiItHrl~ 545 (588)
T PRK11174 518 AHSEQLVMQALNAASRRQTTLMVTHQLE 545 (588)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecChH
Confidence 9999999999988766777888888874
No 490
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.58 E-value=1.4e-07 Score=103.74 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=77.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh--------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-------- 108 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 108 (365)
+.|.||+|+||||+++++++ +..++.|.+.+++........ . ....+.+.++.....+..
T Consensus 1968 ~gLLG~NGAGKTTLlkmL~G-ll~ptsG~I~i~G~~i~~~~~-~----------~r~~IGy~pQ~~~L~~~LTv~E~L~l 2035 (2272)
T TIGR01257 1968 FGLLGVNGAGKTTTFKMLTG-DTTVTSGDATVAGKSILTNIS-D----------VHQNMGYCPQFDAIDDLLTGREHLYL 2035 (2272)
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECcchHH-H----------HhhhEEEEeccccCCCCCCHHHHHHH
Confidence 88999999999999999999 557888888888755410000 0 001112222111111100
Q ss_pred --------------HHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhh
Q 017844 109 --------------VVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (365)
Q Consensus 109 --------------~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~ 156 (365)
.+.+.++.+. ......+| ..++++|+++||+ ..|++.++..+.+.+.+
T Consensus 2036 ~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257 2036 YARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 1111121110 00000111 1347899999998 88999999999999987
Q ss_pred hc-CceeEEEEecCCCcccHHHhcccee
Q 017844 157 YS-ASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 157 ~~-~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.. .+..+|++|++.+ ...++.+|..+
T Consensus 2116 l~~~g~TIILtTH~me-e~e~lcDrV~I 2142 (2272)
T TIGR01257 2116 IIREGRAVVLTSHSME-ECEALCTRLAI 2142 (2272)
T ss_pred HHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 63 3445666666554 33566666643
No 491
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.58 E-value=3.1e-07 Score=82.56 Aligned_cols=54 Identities=9% Similarity=0.172 Sum_probs=40.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.|.+...+..+|+++++.+. ...+.+|+..
T Consensus 184 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~-i~~~~d~i~~ 238 (271)
T PRK14238 184 IEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ-AARISDKTAF 238 (271)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH-HHHhCCEEEE
Confidence 37799999998 889999999999999887655667777776553 3445566543
No 492
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=1.9e-07 Score=85.94 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
+++.+.-.+..|.. +.|.|++|+||||++++|++ +..+..+.+.+++... ..-... +. ... ...+.+..+
T Consensus 30 ~l~~vsl~i~~Ge~--~~IvG~sGsGKSTLl~~l~g-l~~p~~G~i~~~g~~l-~~~~~~--~~--~~~--r~~i~~v~Q 99 (327)
T PRK11308 30 ALDGVSFTLERGKT--LAVVGESGCGKSTLARLLTM-IETPTGGELYYQGQDL-LKADPE--AQ--KLL--RQKIQIVFQ 99 (327)
T ss_pred EEeeeEEEECCCCE--EEEECCCCCcHHHHHHHHHc-CCCCCCcEEEECCEEc-CcCCHH--HH--HHH--hCCEEEEEc
Confidence 34444444555655 99999999999999999999 5567778888877543 100000 00 000 001111111
Q ss_pred Cc----------------------Cccc---hhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEe
Q 017844 101 DA----------------------GFQD---RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLN 137 (365)
Q Consensus 101 ~~----------------------~~~~---~~~~~~~l~~~~------~~~~~~~~~------------~~~~~vliiD 137 (365)
+. +... ...+.+.++.+. ...+..+|+ ..+++++|+|
T Consensus 100 ~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilD 179 (327)
T PRK11308 100 NPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD 179 (327)
T ss_pred CchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 10 0000 011223332211 111111221 2478999999
Q ss_pred CC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 138 EV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 138 E~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
|+ ..|+...+..+++.|.+... +..+|++|++.. ....+.+|+.++
T Consensus 180 EPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm 228 (327)
T PRK11308 180 EPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVM 228 (327)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 98 78999999999998877633 567777777755 334455665433
No 493
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.57 E-value=1.4e-07 Score=84.06 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=40.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+.+. . .+|+.
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~-~-~dri~ 225 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTIL-D-ADLVL 225 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHH-h-CCEEE
Confidence 46799999998 78999999999998887655677788888777543 2 45653
No 494
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.56 E-value=3e-07 Score=82.04 Aligned_cols=55 Identities=7% Similarity=0.177 Sum_probs=40.4
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.+.+.+......+|++|++.+. ...+.+|+.++
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~-~~~~~d~i~~l 220 (258)
T PRK14241 165 VEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ-AARVSDQTAFF 220 (258)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence 47899999998 789999999999999877545667777776553 33444565444
No 495
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=6.7e-08 Score=95.28 Aligned_cols=154 Identities=21% Similarity=0.266 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc-ceecCCCcceeccccccccccceecCCC
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPS 100 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (365)
++.+...+..|.. +.|.||+|+|||||++++++ +..+..|.+.+++.. +...|....... ....+..+.+.....
T Consensus 335 l~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~i~G-~~~p~~G~i~~~~~~~i~~~~q~~~~~~-~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 335 FKNLNLLLEAGER--LAIIGENGVGKTTLLRTLVG-ELEPDSGTVKWSENANIGYYAQDHAYDF-ENDLTLFDWMSQWRQ 410 (530)
T ss_pred ecCcEEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCceEEEEEcccccccC-CCCCcHHHHHHHhcc
Confidence 3333333444544 89999999999999999998 556777777665421 111111100000 000000011111000
Q ss_pred CcCccchhHHHHHHHHHHh------cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCce
Q 017844 101 DAGFQDRYVVQEVIKEMAK------NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASC 161 (365)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~------~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~ 161 (365)
.......+++.++.+.- .....+| ...+++++++||+ ..|+......+.+.+.+. ..
T Consensus 411 --~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~ 486 (530)
T PRK15064 411 --EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EG 486 (530)
T ss_pred --CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 00111123333333211 1111111 1247899999998 889999999999999887 34
Q ss_pred eEEEEecCCCcccHHHhccceeE
Q 017844 162 RLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 162 ~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+|++|++.+ ....+.+|+.++
T Consensus 487 tvi~vsHd~~-~~~~~~d~i~~l 508 (530)
T PRK15064 487 TLIFVSHDRE-FVSSLATRIIEI 508 (530)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEE
Confidence 6777777655 334455665443
No 496
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=3.2e-07 Score=81.60 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=40.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+...+..+|++|++.+.+ +.+.+|+.+
T Consensus 166 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~-~~~~d~v~~ 220 (253)
T PRK14261 166 VNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA-ARVSDYTGF 220 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH-HhhCCEEEE
Confidence 47899999998 8899999999999998876556677777765543 344556543
No 497
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.56 E-value=1.8e-07 Score=86.29 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=40.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++|+||+ ..|+...+..+++.|.+... +..+|++|++.. ....+.+|+.+
T Consensus 178 ~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~v 234 (330)
T PRK09473 178 CRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLV 234 (330)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 37899999998 88999999999998887643 567888887765 33445666643
No 498
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=2.4e-07 Score=82.06 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=39.9
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|+......+.+.+.+...+..+|++|++.+.+ ..+.+|+.+
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~-~~~~d~i~~ 213 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQG-KRVADYTAF 213 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhhCcEEEE
Confidence 47899999998 7899999999999998765556677777765533 344556543
No 499
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.55 E-value=3e-07 Score=79.50 Aligned_cols=53 Identities=6% Similarity=-0.028 Sum_probs=34.9
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..+++.....+.+.+.+......+|+++++.. ....+.+++.
T Consensus 121 ~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~-~~~~~~d~i~ 174 (213)
T PRK15177 121 LPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPR-LIKEHCHAFG 174 (213)
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHH-HHHHhcCeeE
Confidence 47789999996 88888888888887644322334667766655 3334445543
No 500
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=2.9e-07 Score=82.21 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=42.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~ 185 (365)
.+++++++||+ ..|+...+..+.+.+.+...+..+|+++++.+. ...+.+|+.++.
T Consensus 166 ~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~-i~~~~d~v~~l~ 222 (261)
T PRK14263 166 TEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ-AIRVADTTAFFS 222 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHHhCCEEEEEe
Confidence 47899999998 889999999999999887555566677766553 445667766663
Done!