Query 017844
Match_columns 365
No_of_seqs 391 out of 3382
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 05:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_E Activator 1 40 kDa subu 100.0 7.6E-45 2.6E-49 338.6 31.5 323 1-326 2-334 (354)
2 3u61_B DNA polymerase accessor 100.0 4.6E-37 1.6E-41 282.6 28.0 278 1-325 14-301 (324)
3 1sxj_C Activator 1 40 kDa subu 100.0 7.5E-37 2.5E-41 282.9 27.7 288 1-324 13-310 (340)
4 2chq_A Replication factor C sm 100.0 1.3E-35 4.5E-40 271.9 24.8 288 1-324 5-296 (319)
5 1jr3_A DNA polymerase III subu 100.0 1.3E-35 4.5E-40 278.0 24.5 335 2-359 5-359 (373)
6 1iqp_A RFCS; clamp loader, ext 100.0 5.3E-35 1.8E-39 268.8 26.2 288 1-324 13-304 (327)
7 1sxj_D Activator 1 41 kDa subu 100.0 7.6E-34 2.6E-38 264.0 23.3 292 1-324 25-333 (353)
8 1sxj_B Activator 1 37 kDa subu 100.0 8.3E-33 2.8E-37 253.7 24.9 286 1-324 9-299 (323)
9 3pvs_A Replication-associated 100.0 3.1E-32 1.1E-36 259.0 21.2 321 2-364 15-371 (447)
10 1a5t_A Delta prime, HOLB; zinc 100.0 1.7E-29 5.9E-34 232.7 18.4 298 17-358 6-321 (334)
11 2chg_A Replication factor C sm 100.0 5.2E-28 1.8E-32 209.4 24.5 207 1-239 5-211 (226)
12 1njg_A DNA polymerase III subu 100.0 2.7E-27 9.2E-32 207.6 21.6 220 2-239 12-235 (250)
13 2gno_A DNA polymerase III, gam 100.0 3E-27 1E-31 213.8 19.3 238 17-303 1-254 (305)
14 1sxj_A Activator 1 95 kDa subu 99.9 1.2E-27 4.2E-32 232.6 15.7 231 1-267 27-292 (516)
15 1jr3_D DNA polymerase III, del 99.9 2.1E-26 7.3E-31 213.0 8.9 293 25-362 9-337 (343)
16 3pfi_A Holliday junction ATP-d 99.9 1.1E-23 3.9E-28 194.3 21.2 191 2-237 18-232 (338)
17 3uk6_A RUVB-like 2; hexameric 99.9 1.4E-23 4.7E-28 196.0 19.8 234 2-239 32-310 (368)
18 1hqc_A RUVB; extended AAA-ATPa 99.9 1.2E-22 4.1E-27 186.2 21.4 194 2-239 1-218 (324)
19 2c9o_A RUVB-like 1; hexameric 99.9 1.7E-22 5.7E-27 193.6 20.3 106 132-238 297-416 (456)
20 2z4s_A Chromosomal replication 99.9 3E-23 1E-27 197.5 14.5 275 7-324 98-403 (440)
21 3bos_A Putative DNA replicatio 99.9 2.7E-22 9.3E-27 175.6 18.4 194 2-239 16-224 (242)
22 1in4_A RUVB, holliday junction 99.9 1.3E-21 4.4E-26 180.0 21.3 191 3-238 15-229 (334)
23 3vfd_A Spastin; ATPase, microt 99.9 1.4E-20 4.7E-25 176.9 22.5 196 2-234 104-327 (389)
24 1l8q_A Chromosomal replication 99.9 2.5E-21 8.4E-26 177.6 16.7 260 10-323 8-289 (324)
25 3b9p_A CG5977-PA, isoform A; A 99.9 3.8E-20 1.3E-24 167.5 23.4 197 2-235 10-236 (297)
26 3syl_A Protein CBBX; photosynt 99.9 7.5E-21 2.6E-25 173.1 17.2 187 14-237 32-260 (309)
27 3eie_A Vacuolar protein sortin 99.9 2E-20 6.9E-25 171.2 19.3 197 2-235 7-231 (322)
28 2qp9_X Vacuolar protein sortin 99.9 3.9E-20 1.3E-24 171.4 20.9 198 2-236 40-265 (355)
29 1fnn_A CDC6P, cell division co 99.8 6E-20 2.1E-24 172.3 20.1 218 2-238 9-253 (389)
30 1xwi_A SKD1 protein; VPS4B, AA 99.8 3.2E-19 1.1E-23 163.0 23.5 197 4-236 3-227 (322)
31 3d8b_A Fidgetin-like protein 1 99.8 7.7E-20 2.6E-24 169.6 18.8 197 3-236 74-299 (357)
32 2zan_A Vacuolar protein sortin 99.8 1.6E-19 5.6E-24 172.0 20.3 198 3-236 124-349 (444)
33 1lv7_A FTSH; alpha/beta domain 99.8 1.2E-19 4.3E-24 160.7 17.7 200 2-239 1-232 (257)
34 2v1u_A Cell division control p 99.8 4.4E-20 1.5E-24 173.0 14.0 217 3-238 12-255 (387)
35 2qby_B CDC6 homolog 3, cell di 99.8 1.9E-19 6.5E-24 168.7 17.7 219 2-240 12-253 (384)
36 4b4t_J 26S protease regulatory 99.8 1E-18 3.6E-23 161.3 22.2 194 5-236 140-366 (405)
37 3pxg_A Negative regulator of g 99.8 5.1E-20 1.7E-24 176.7 13.5 200 2-238 169-384 (468)
38 3te6_A Regulatory protein SIR3 99.8 5E-19 1.7E-23 159.7 18.3 206 15-239 22-286 (318)
39 2qz4_A Paraplegin; AAA+, SPG7, 99.8 7.4E-18 2.5E-22 149.5 25.4 216 9-262 2-251 (262)
40 1ofh_A ATP-dependent HSL prote 99.8 1.8E-19 6.2E-24 163.8 15.2 194 13-236 15-270 (310)
41 4fcw_A Chaperone protein CLPB; 99.8 2.8E-19 9.6E-24 162.8 15.6 201 13-237 17-276 (311)
42 3h4m_A Proteasome-activating n 99.8 6.2E-19 2.1E-23 158.5 16.6 195 5-237 9-236 (285)
43 2r44_A Uncharacterized protein 99.8 8E-19 2.7E-23 161.3 17.6 252 2-301 16-326 (331)
44 4b4t_I 26S protease regulatory 99.8 2.4E-18 8.4E-23 159.3 19.4 194 4-235 173-399 (437)
45 4b4t_H 26S protease regulatory 99.8 6.4E-18 2.2E-22 158.0 20.1 193 5-235 201-426 (467)
46 4b4t_M 26S protease regulatory 99.8 6.4E-18 2.2E-22 158.4 18.6 193 5-235 173-398 (434)
47 1jbk_A CLPB protein; beta barr 99.8 3.9E-19 1.3E-23 149.7 9.2 171 2-198 11-194 (195)
48 2qby_A CDC6 homolog 1, cell di 99.8 2.3E-18 8E-23 161.1 14.5 217 3-238 13-251 (386)
49 4b4t_K 26S protease regulatory 99.8 2.6E-17 8.9E-22 154.1 20.1 190 8-235 167-390 (428)
50 1g8p_A Magnesium-chelatase 38 99.8 3E-18 1E-22 158.5 13.6 229 5-239 16-302 (350)
51 4b4t_L 26S protease subunit RP 99.8 3.4E-17 1.1E-21 153.6 20.6 189 9-235 177-398 (437)
52 2bjv_A PSP operon transcriptio 99.8 4.8E-17 1.6E-21 144.6 19.1 204 10-238 3-239 (265)
53 2ce7_A Cell division protein F 99.8 3.6E-17 1.2E-21 155.7 19.1 198 3-238 5-235 (476)
54 3cf0_A Transitional endoplasmi 99.8 1.6E-17 5.5E-22 150.5 16.0 194 5-236 7-233 (301)
55 1qvr_A CLPB protein; coiled co 99.8 3.3E-18 1.1E-22 175.7 12.9 205 2-238 159-391 (854)
56 3pxi_A Negative regulator of g 99.7 8.1E-18 2.8E-22 171.0 14.6 200 2-238 169-384 (758)
57 3m6a_A ATP-dependent protease 99.7 1.8E-17 6.1E-22 161.6 14.5 196 13-237 81-313 (543)
58 1r6b_X CLPA protein; AAA+, N-t 99.7 2E-17 7E-22 168.2 14.5 209 2-238 175-408 (758)
59 3pxi_A Negative regulator of g 99.7 6.5E-17 2.2E-21 164.3 18.0 185 13-235 491-720 (758)
60 2p65_A Hypothetical protein PF 99.7 3.7E-18 1.3E-22 143.0 7.0 163 2-190 11-187 (187)
61 1r6b_X CLPA protein; AAA+, N-t 99.7 3.1E-16 1.1E-20 159.5 19.1 197 13-237 458-713 (758)
62 1ojl_A Transcriptional regulat 99.7 8.9E-16 3E-20 139.0 20.1 203 13-240 2-236 (304)
63 1um8_A ATP-dependent CLP prote 99.7 1.1E-16 3.8E-21 149.6 14.5 194 14-238 22-338 (376)
64 2r62_A Cell division protease 99.7 3.1E-18 1.1E-22 152.5 3.1 198 5-240 3-234 (268)
65 2dhr_A FTSH; AAA+ protein, hex 99.7 4.7E-16 1.6E-20 148.9 16.0 197 3-239 22-251 (499)
66 3hu3_A Transitional endoplasmi 99.7 3E-16 1E-20 150.5 14.5 195 6-238 197-421 (489)
67 1qvr_A CLPB protein; coiled co 99.7 1.5E-16 5.1E-21 163.4 13.3 201 13-237 558-817 (854)
68 3k1j_A LON protease, ATP-depen 99.7 5.5E-16 1.9E-20 153.3 16.3 233 4-238 32-354 (604)
69 1d2n_A N-ethylmaleimide-sensit 99.7 7.9E-16 2.7E-20 137.3 14.4 184 13-237 33-247 (272)
70 1ixz_A ATP-dependent metallopr 99.7 2E-15 6.7E-20 133.3 15.4 197 3-238 6-235 (254)
71 1iy2_A ATP-dependent metallopr 99.6 2.3E-14 8E-19 128.1 18.4 193 7-238 34-259 (278)
72 3cf2_A TER ATPase, transitiona 99.6 4.4E-15 1.5E-19 148.8 13.2 176 10-223 201-405 (806)
73 1w5s_A Origin recognition comp 99.6 1.2E-14 4.1E-19 137.2 13.4 214 5-237 17-271 (412)
74 3hws_A ATP-dependent CLP prote 99.6 7.1E-15 2.4E-19 136.6 10.4 193 15-238 17-321 (363)
75 3t15_A Ribulose bisphosphate c 99.5 2.3E-13 7.8E-18 122.5 18.1 153 37-225 39-220 (293)
76 3cf2_A TER ATPase, transitiona 99.5 9.1E-15 3.1E-19 146.5 9.0 184 10-231 474-693 (806)
77 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 6.3E-14 2.1E-18 134.3 12.6 196 13-238 22-265 (500)
78 3ec2_A DNA replication protein 99.5 6.1E-14 2.1E-18 117.0 10.6 134 4-172 1-145 (180)
79 1g41_A Heat shock protein HSLU 99.5 3.4E-13 1.2E-17 126.6 16.4 108 131-238 251-406 (444)
80 3n70_A Transport activator; si 99.5 1.8E-13 6E-18 110.0 11.7 132 14-189 2-144 (145)
81 2x8a_A Nuclear valosin-contain 99.5 1.1E-12 3.9E-17 116.6 17.2 175 8-219 5-210 (274)
82 3f9v_A Minichromosome maintena 99.4 1.9E-13 6.5E-18 134.4 9.3 159 13-203 295-491 (595)
83 3co5_A Putative two-component 99.4 3.5E-13 1.2E-17 108.0 8.2 128 14-189 5-142 (143)
84 2qen_A Walker-type ATPase; unk 99.4 7.5E-12 2.6E-16 115.1 17.2 220 1-234 1-248 (350)
85 1ypw_A Transitional endoplasmi 99.4 2.3E-12 7.9E-17 131.0 14.0 184 6-227 197-409 (806)
86 1ypw_A Transitional endoplasmi 99.4 3E-14 1E-18 144.8 -2.7 161 7-204 471-663 (806)
87 3dzd_A Transcriptional regulat 99.3 6.8E-11 2.3E-15 109.6 17.8 201 13-239 129-361 (368)
88 1ny5_A Transcriptional regulat 99.3 1.4E-10 4.7E-15 108.3 18.4 204 12-240 136-371 (387)
89 2kjq_A DNAA-related protein; s 99.2 3.3E-11 1.1E-15 97.0 8.6 119 11-182 15-140 (149)
90 2fna_A Conserved hypothetical 99.2 9.3E-10 3.2E-14 101.2 18.8 211 8-235 8-253 (357)
91 2w58_A DNAI, primosome compone 99.2 2.8E-11 9.6E-16 102.6 7.2 58 4-61 16-81 (202)
92 1u0j_A DNA replication protein 99.2 3.2E-10 1.1E-14 99.0 12.5 136 21-210 89-258 (267)
93 3upu_A ATP-dependent DNA helic 99.1 4.9E-10 1.7E-14 107.1 13.1 147 1-171 12-166 (459)
94 2pcj_A ABC transporter, lipopr 99.1 1.5E-10 5.2E-15 99.7 6.6 132 31-171 29-201 (224)
95 2qgz_A Helicase loader, putati 99.0 1.3E-10 4.6E-15 105.0 5.7 55 5-59 116-177 (308)
96 3tui_C Methionine import ATP-b 99.0 3.7E-10 1.3E-14 103.4 8.2 143 30-183 52-236 (366)
97 1tue_A Replication protein E1; 99.0 5.2E-10 1.8E-14 93.3 8.3 119 20-189 43-179 (212)
98 3tif_A Uncharacterized ABC tra 99.0 2.2E-10 7.4E-15 99.4 6.2 52 129-182 162-216 (235)
99 2olj_A Amino acid ABC transpor 99.0 6.3E-10 2.2E-14 98.0 8.1 137 37-183 53-231 (263)
100 1vpl_A ABC transporter, ATP-bi 99.0 2.3E-10 7.7E-15 100.5 5.1 132 37-181 44-216 (256)
101 1g6h_A High-affinity branched- 99.0 5.4E-10 1.9E-14 98.3 6.4 53 129-182 170-224 (257)
102 3gfo_A Cobalt import ATP-bindi 99.0 5.1E-10 1.8E-14 99.1 5.7 143 29-183 31-216 (275)
103 1ye8_A Protein THEP1, hypothet 99.0 4.9E-09 1.7E-13 86.8 11.3 68 130-199 99-173 (178)
104 3rlf_A Maltose/maltodextrin im 98.9 6.7E-10 2.3E-14 102.3 6.2 137 30-182 27-205 (381)
105 1z47_A CYSA, putative ABC-tran 98.9 1.2E-09 4.1E-14 100.0 7.4 138 29-182 38-217 (355)
106 1sgw_A Putative ABC transporte 98.9 9.2E-10 3.2E-14 93.8 5.8 139 29-172 32-195 (214)
107 2yyz_A Sugar ABC transporter, 98.9 1.3E-09 4.3E-14 100.0 7.1 148 31-182 28-205 (359)
108 1ji0_A ABC transporter; ATP bi 98.9 8.8E-10 3E-14 95.9 5.6 148 31-182 31-210 (240)
109 2onk_A Molybdate/tungstate ABC 98.9 8.2E-10 2.8E-14 96.0 5.3 145 36-182 26-198 (240)
110 3fvq_A Fe(3+) IONS import ATP- 98.9 1.3E-09 4.5E-14 99.7 6.8 148 30-182 28-210 (359)
111 4g1u_C Hemin import ATP-bindin 98.9 7.5E-10 2.6E-14 97.8 5.0 150 30-183 35-220 (266)
112 2it1_A 362AA long hypothetical 98.9 1.6E-09 5.5E-14 99.5 7.3 137 30-182 27-205 (362)
113 1g29_1 MALK, maltose transport 98.9 1.6E-09 5.4E-14 100.0 7.0 144 30-183 27-212 (372)
114 1v43_A Sugar-binding transport 98.9 2.1E-09 7.2E-14 99.0 7.3 150 30-183 35-214 (372)
115 1b0u_A Histidine permease; ABC 98.9 1.2E-09 4.1E-14 96.3 5.2 54 129-183 170-225 (262)
116 2ff7_A Alpha-hemolysin translo 98.8 6E-09 2E-13 91.0 8.1 137 30-172 33-206 (247)
117 1oxx_K GLCV, glucose, ABC tran 98.8 1.2E-09 4E-14 100.2 3.7 149 30-182 29-212 (353)
118 3d31_A Sulfate/molybdate ABC t 98.8 2.1E-09 7.3E-14 98.2 5.3 137 30-182 24-199 (348)
119 2yz2_A Putative ABC transporte 98.8 5.8E-09 2E-13 92.2 6.8 142 37-182 36-209 (266)
120 2qi9_C Vitamin B12 import ATP- 98.8 1.4E-09 4.7E-14 95.0 2.7 141 37-182 29-204 (249)
121 2d2e_A SUFC protein; ABC-ATPas 98.8 5.4E-09 1.8E-13 91.5 6.5 52 130-182 161-215 (250)
122 3nh6_A ATP-binding cassette SU 98.8 9.7E-10 3.3E-14 98.7 1.2 125 37-172 83-251 (306)
123 2pjz_A Hypothetical protein ST 98.8 1.9E-08 6.3E-13 88.5 9.2 128 37-182 33-197 (263)
124 4akg_A Glutathione S-transfera 98.8 6.2E-08 2.1E-12 108.2 15.4 77 128-204 1334-1433(2695)
125 2ixe_A Antigen peptide transpo 98.7 8.6E-09 2.9E-13 91.2 6.1 43 129-171 173-218 (271)
126 3f8t_A Predicted ATPase involv 98.7 1.8E-07 6.3E-12 87.5 14.7 170 15-220 215-426 (506)
127 2nq2_C Hypothetical ABC transp 98.7 1.2E-08 4.3E-13 89.2 5.4 55 129-184 145-202 (253)
128 3gd7_A Fusion complex of cysti 98.7 1E-08 3.5E-13 95.0 4.9 138 29-182 44-224 (390)
129 2ghi_A Transport protein; mult 98.7 2.6E-08 8.9E-13 87.6 7.1 43 130-172 173-216 (260)
130 2zu0_C Probable ATP-dependent 98.7 1.6E-08 5.6E-13 89.2 5.8 42 130-171 182-225 (267)
131 1mv5_A LMRA, multidrug resista 98.7 1.8E-08 6.3E-13 87.7 5.3 36 37-73 31-66 (243)
132 2ihy_A ABC transporter, ATP-bi 98.7 7.5E-09 2.6E-13 91.9 2.7 41 30-73 45-85 (279)
133 3b5x_A Lipid A export ATP-bind 98.6 3.6E-08 1.2E-12 96.9 6.8 147 21-172 358-541 (582)
134 2cbz_A Multidrug resistance-as 98.6 2.5E-08 8.4E-13 86.5 3.8 51 130-182 145-199 (237)
135 4a82_A Cystic fibrosis transme 98.6 2.2E-08 7.5E-13 98.4 3.8 126 37-173 370-539 (578)
136 2pze_A Cystic fibrosis transme 98.6 2.6E-08 9E-13 85.9 3.8 43 129-171 147-191 (229)
137 3b60_A Lipid A export ATP-bind 98.6 4.3E-08 1.5E-12 96.4 5.5 125 37-172 372-541 (582)
138 3b85_A Phosphate starvation-in 98.5 8.1E-08 2.8E-12 81.4 6.0 50 5-66 3-52 (208)
139 3qf4_B Uncharacterized ABC tra 98.5 2.8E-08 9.5E-13 98.0 3.3 45 129-173 508-553 (598)
140 3qf4_A ABC transporter, ATP-bi 98.5 2.4E-08 8.1E-13 98.2 2.1 125 37-172 372-540 (587)
141 4akg_A Glutathione S-transfera 98.5 7.1E-06 2.4E-10 92.1 20.3 167 20-235 633-836 (2695)
142 2bbs_A Cystic fibrosis transme 98.5 1.7E-07 6E-12 83.5 6.0 43 129-171 176-220 (290)
143 2yl4_A ATP-binding cassette SU 98.4 1.2E-07 4.2E-12 93.4 5.2 134 37-171 373-543 (595)
144 3ozx_A RNAse L inhibitor; ATP 98.4 2.1E-07 7.2E-12 90.1 6.3 144 37-185 297-460 (538)
145 1z6t_A APAF-1, apoptotic prote 98.4 2.8E-06 9.7E-11 83.6 14.4 201 8-233 119-329 (591)
146 1yqt_A RNAse L inhibitor; ATP- 98.4 5.6E-07 1.9E-11 87.3 7.5 56 129-185 418-476 (538)
147 2orw_A Thymidine kinase; TMTK, 98.4 2.9E-07 9.9E-12 76.5 4.7 50 130-182 76-131 (184)
148 3vkg_A Dynein heavy chain, cyt 98.3 4.4E-06 1.5E-10 94.3 15.1 76 129-204 1373-1471(3245)
149 2pt7_A CAG-ALFA; ATPase, prote 98.3 1.8E-06 6E-11 78.6 9.9 48 21-71 160-207 (330)
150 3bk7_A ABC transporter ATP-bin 98.3 6.1E-07 2.1E-11 88.1 7.3 56 129-185 488-546 (607)
151 1yqt_A RNAse L inhibitor; ATP- 98.3 1.2E-06 4.2E-11 84.9 8.3 55 129-184 175-231 (538)
152 2r2a_A Uncharacterized protein 98.3 1.1E-06 3.6E-11 73.9 6.7 60 130-189 87-153 (199)
153 2a5y_B CED-4; apoptosis; HET: 98.3 7.2E-06 2.4E-10 80.0 13.5 187 16-229 131-334 (549)
154 2i3b_A HCR-ntpase, human cance 98.3 3.6E-06 1.2E-10 70.0 9.7 69 128-198 103-180 (189)
155 2b8t_A Thymidine kinase; deoxy 98.3 6.2E-06 2.1E-10 70.3 11.2 111 37-169 15-125 (223)
156 2eyu_A Twitching motility prot 98.3 2.6E-06 8.8E-11 74.8 8.9 58 9-71 5-62 (261)
157 4gp7_A Metallophosphoesterase; 98.3 5E-07 1.7E-11 74.1 4.0 44 128-171 99-160 (171)
158 3j16_B RLI1P; ribosome recycli 98.3 3.1E-06 1.1E-10 83.0 10.0 55 129-184 238-294 (608)
159 3g5u_A MCG1178, multidrug resi 98.2 6.3E-07 2.2E-11 95.6 4.7 133 37-182 1062-1240(1284)
160 3g5u_A MCG1178, multidrug resi 98.2 9.3E-07 3.2E-11 94.3 5.4 125 37-172 419-587 (1284)
161 4f4c_A Multidrug resistance pr 98.2 8E-07 2.7E-11 95.1 4.7 126 37-173 1108-1279(1321)
162 3bk7_A ABC transporter ATP-bin 98.2 2.2E-06 7.5E-11 84.2 6.9 56 129-185 245-302 (607)
163 3jvv_A Twitching mobility prot 98.2 1.1E-05 3.9E-10 73.9 11.2 47 9-60 103-149 (356)
164 1s96_A Guanylate kinase, GMP k 98.2 8.7E-06 3E-10 69.4 9.8 22 37-58 19-40 (219)
165 3sfz_A APAF-1, apoptotic pepti 98.2 4.4E-05 1.5E-09 81.5 17.5 199 8-229 119-325 (1249)
166 3ozx_A RNAse L inhibitor; ATP 98.1 2.4E-06 8.1E-11 82.8 6.2 55 129-184 155-210 (538)
167 3j16_B RLI1P; ribosome recycli 98.1 5.5E-06 1.9E-10 81.3 8.7 55 129-184 484-541 (608)
168 2ehv_A Hypothetical protein PH 98.1 7.8E-07 2.7E-11 77.4 2.4 21 37-57 33-53 (251)
169 3sop_A Neuronal-specific septi 98.1 4.5E-05 1.5E-09 67.2 13.6 34 37-71 5-38 (270)
170 4f4c_A Multidrug resistance pr 98.1 8.7E-07 3E-11 94.8 2.3 126 37-173 447-616 (1321)
171 3szr_A Interferon-induced GTP- 98.0 9.3E-06 3.2E-10 80.0 8.3 129 33-169 44-195 (608)
172 3vkg_A Dynein heavy chain, cyt 98.0 0.00028 9.5E-09 80.2 20.3 168 19-235 591-796 (3245)
173 1tf7_A KAIC; homohexamer, hexa 97.9 2.8E-06 9.7E-11 82.4 2.8 50 19-71 25-77 (525)
174 1htw_A HI0065; nucleotide-bind 97.9 5.6E-06 1.9E-10 66.8 3.6 35 37-73 36-70 (158)
175 2gza_A Type IV secretion syste 97.9 1.8E-05 6.3E-10 72.8 7.3 45 23-70 166-210 (361)
176 4a74_A DNA repair and recombin 97.9 3.1E-05 1E-09 66.2 7.8 23 37-59 28-50 (231)
177 4aby_A DNA repair protein RECN 97.9 4.2E-05 1.4E-09 71.7 9.0 40 132-171 317-357 (415)
178 2zr9_A Protein RECA, recombina 97.8 2.8E-05 9.7E-10 71.1 7.5 33 37-69 64-96 (349)
179 2iw3_A Elongation factor 3A; a 97.8 5.6E-05 1.9E-09 77.5 9.9 51 129-182 565-616 (986)
180 2w0m_A SSO2452; RECA, SSPF, un 97.8 3.6E-05 1.2E-09 65.8 7.3 23 37-59 26-48 (235)
181 3e1s_A Exodeoxyribonuclease V, 97.8 8.8E-05 3E-09 72.4 10.3 39 130-171 279-317 (574)
182 2ewv_A Twitching motility prot 97.8 4.5E-05 1.5E-09 70.4 7.5 23 37-59 139-161 (372)
183 3hr8_A Protein RECA; alpha and 97.8 2.9E-05 9.9E-10 70.9 6.0 34 37-70 64-97 (356)
184 2cvh_A DNA repair and recombin 97.7 0.00011 3.7E-09 62.3 8.6 20 37-56 23-42 (220)
185 3thx_B DNA mismatch repair pro 97.7 3.5E-05 1.2E-09 78.8 6.3 43 129-171 751-797 (918)
186 1cr0_A DNA primase/helicase; R 97.7 3.6E-05 1.2E-09 68.8 5.8 23 37-59 38-60 (296)
187 2vhj_A Ntpase P4, P4; non- hyd 97.7 0.00014 4.9E-09 65.0 9.5 21 37-57 126-146 (331)
188 1ewq_A DNA mismatch repair pro 97.7 5.6E-05 1.9E-09 76.0 7.5 22 37-58 579-600 (765)
189 3thx_A DNA mismatch repair pro 97.7 5.7E-05 2E-09 77.4 7.5 20 37-56 665-684 (934)
190 2oap_1 GSPE-2, type II secreti 97.6 0.00013 4.5E-09 70.1 8.6 50 18-70 246-295 (511)
191 1vt4_I APAF-1 related killer D 97.6 0.0008 2.7E-08 69.2 14.6 41 16-56 131-172 (1221)
192 2iut_A DNA translocase FTSK; n 97.6 0.0012 4.2E-08 63.6 15.0 69 131-199 344-420 (574)
193 1xx6_A Thymidine kinase; NESG, 97.6 0.00014 4.6E-09 60.5 6.9 23 37-59 11-33 (191)
194 2iw3_A Elongation factor 3A; a 97.6 6.6E-05 2.3E-09 76.9 5.9 41 129-171 918-959 (986)
195 1w36_D RECD, exodeoxyribonucle 97.6 0.00017 5.8E-09 71.1 8.7 39 130-171 262-300 (608)
196 1pzn_A RAD51, DNA repair and r 97.6 0.00018 6.1E-09 65.8 8.2 22 37-58 134-155 (349)
197 2ius_A DNA translocase FTSK; n 97.6 0.00057 2E-08 65.3 11.8 68 132-199 299-374 (512)
198 3cmu_A Protein RECA, recombina 97.5 0.00011 3.7E-09 80.3 7.1 27 36-62 1429-1455(2050)
199 1g5t_A COB(I)alamin adenosyltr 97.5 0.0006 2.1E-08 56.4 10.0 41 128-171 118-164 (196)
200 1n0w_A DNA repair protein RAD5 97.5 0.00018 6.1E-09 61.9 7.2 22 37-58 27-48 (243)
201 2r8r_A Sensor protein; KDPD, P 97.5 0.0012 4.1E-08 55.9 11.9 26 37-62 9-34 (228)
202 2bdt_A BH3686; alpha-beta prot 97.5 0.00016 5.3E-09 59.9 6.4 20 37-56 5-24 (189)
203 1rj9_A FTSY, signal recognitio 97.5 0.00084 2.9E-08 60.0 11.1 35 37-72 105-139 (304)
204 1wb9_A DNA mismatch repair pro 97.4 0.00016 5.3E-09 73.2 6.7 22 37-58 610-631 (800)
205 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.0012 4.1E-08 57.7 11.6 24 36-59 6-29 (260)
206 2fz4_A DNA repair protein RAD2 97.4 0.00061 2.1E-08 58.7 9.6 37 19-58 96-132 (237)
207 3io5_A Recombination and repai 97.4 0.00022 7.6E-09 63.5 6.8 34 37-70 31-66 (333)
208 1xp8_A RECA protein, recombina 97.4 0.0003 1E-08 64.6 7.7 25 37-61 77-101 (366)
209 2ga8_A Hypothetical 39.9 kDa p 97.4 0.00014 4.6E-09 66.1 5.2 40 20-59 10-49 (359)
210 1u94_A RECA protein, recombina 97.4 0.00012 4.1E-09 67.0 4.6 34 37-70 66-99 (356)
211 3e70_C DPA, signal recognition 97.4 0.001 3.4E-08 60.2 10.5 34 37-71 132-165 (328)
212 4eun_A Thermoresistant glucoki 97.3 0.00019 6.4E-09 60.1 5.0 23 36-58 31-53 (200)
213 2o8b_B DNA mismatch repair pro 97.3 0.00066 2.3E-08 70.5 9.8 18 37-54 792-809 (1022)
214 3vaa_A Shikimate kinase, SK; s 97.3 0.00012 4.3E-09 61.1 3.7 34 23-58 16-49 (199)
215 3exa_A TRNA delta(2)-isopenten 97.3 0.0012 4E-08 58.8 9.8 88 147-240 78-174 (322)
216 1tf7_A KAIC; homohexamer, hexa 97.3 0.00026 9.1E-09 68.5 6.2 23 37-59 284-306 (525)
217 3kl4_A SRP54, signal recogniti 97.3 0.0013 4.3E-08 61.6 10.5 24 37-60 100-123 (433)
218 3c8u_A Fructokinase; YP_612366 97.3 0.00027 9.2E-09 59.5 5.4 39 21-59 7-47 (208)
219 3dm5_A SRP54, signal recogniti 97.3 0.002 7E-08 60.3 11.7 26 37-62 103-128 (443)
220 3llm_A ATP-dependent RNA helic 97.3 0.0015 5.2E-08 56.0 10.2 21 36-56 78-98 (235)
221 1zp6_A Hypothetical protein AT 97.3 0.00011 3.9E-09 60.8 2.6 31 37-70 12-42 (191)
222 1kag_A SKI, shikimate kinase I 97.2 0.00017 5.7E-09 58.7 3.5 22 37-58 7-28 (173)
223 2j9r_A Thymidine kinase; TK1, 97.2 0.00067 2.3E-08 57.0 7.1 39 130-171 101-139 (214)
224 1qhx_A CPT, protein (chloramph 97.2 0.00018 6E-09 58.8 3.4 22 37-58 6-27 (178)
225 2jeo_A Uridine-cytidine kinase 97.2 0.00014 4.7E-09 63.1 2.8 39 18-58 11-49 (245)
226 2yhs_A FTSY, cell division pro 97.2 0.00042 1.4E-08 65.7 6.2 33 37-70 296-328 (503)
227 3trf_A Shikimate kinase, SK; a 97.2 0.00028 9.6E-09 58.0 4.3 24 35-58 6-29 (185)
228 1z6g_A Guanylate kinase; struc 97.2 0.00023 7.8E-09 60.5 3.9 41 22-68 13-53 (218)
229 3kb2_A SPBC2 prophage-derived 97.2 0.00022 7.4E-09 57.8 3.6 23 36-58 3-25 (173)
230 1ls1_A Signal recognition part 97.2 0.0011 3.6E-08 59.1 8.3 23 37-59 101-123 (295)
231 3ux8_A Excinuclease ABC, A sub 97.1 0.0011 3.7E-08 66.2 8.9 40 132-171 224-265 (670)
232 3uie_A Adenylyl-sulfate kinase 97.1 0.00039 1.3E-08 58.1 4.8 23 37-59 28-50 (200)
233 1w4r_A Thymidine kinase; type 97.1 0.00054 1.9E-08 56.6 5.5 24 37-60 23-47 (195)
234 1p9r_A General secretion pathw 97.1 0.0008 2.8E-08 62.9 7.3 58 10-69 144-201 (418)
235 1znw_A Guanylate kinase, GMP k 97.1 0.00024 8.1E-09 59.8 3.3 29 28-58 16-44 (207)
236 2v9p_A Replication protein E1; 97.1 0.00036 1.2E-08 62.3 4.4 36 21-58 115-150 (305)
237 1t6n_A Probable ATP-dependent 97.1 0.024 8.2E-07 47.6 15.8 51 129-179 157-209 (220)
238 3nwj_A ATSK2; P loop, shikimat 97.1 0.00041 1.4E-08 60.2 4.6 40 17-58 30-72 (250)
239 3lda_A DNA repair protein RAD5 97.1 0.00076 2.6E-08 62.6 6.6 22 37-58 181-202 (400)
240 1kgd_A CASK, peripheral plasma 97.1 0.00032 1.1E-08 57.6 3.7 22 37-58 8-29 (180)
241 1ly1_A Polynucleotide kinase; 97.1 0.00036 1.2E-08 57.0 3.8 20 37-56 5-24 (181)
242 3iij_A Coilin-interacting nucl 97.1 0.00039 1.3E-08 56.9 4.0 23 36-58 13-35 (180)
243 1via_A Shikimate kinase; struc 97.1 0.00035 1.2E-08 57.0 3.7 23 36-58 6-28 (175)
244 1lvg_A Guanylate kinase, GMP k 97.1 0.00039 1.3E-08 58.1 4.0 22 37-58 7-28 (198)
245 1zuh_A Shikimate kinase; alpha 97.1 0.00045 1.6E-08 55.8 4.3 25 35-59 8-32 (168)
246 3a00_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 57.5 3.7 22 37-58 4-25 (186)
247 3tr0_A Guanylate kinase, GMP k 97.0 0.00034 1.2E-08 58.5 3.4 21 37-57 10-30 (205)
248 3t61_A Gluconokinase; PSI-biol 97.0 0.00038 1.3E-08 58.2 3.6 23 36-58 20-42 (202)
249 3cmw_A Protein RECA, recombina 97.0 0.00081 2.8E-08 72.7 6.8 23 37-59 1085-1107(1706)
250 1knq_A Gluconate kinase; ALFA/ 97.0 0.00042 1.4E-08 56.4 3.6 22 37-58 11-32 (175)
251 1kht_A Adenylate kinase; phosp 97.0 0.00042 1.4E-08 57.2 3.7 23 37-59 6-28 (192)
252 1tq4_A IIGP1, interferon-induc 97.0 0.00059 2E-08 63.5 4.9 51 19-70 36-104 (413)
253 1vma_A Cell division protein F 97.0 0.0039 1.3E-07 55.7 10.1 23 37-59 107-129 (306)
254 2qag_C Septin-7; cell cycle, c 97.0 0.0031 1.1E-07 58.9 9.8 22 37-58 34-55 (418)
255 2gxq_A Heat resistant RNA depe 97.0 0.0066 2.3E-07 50.5 11.1 44 129-172 143-187 (207)
256 2px0_A Flagellar biosynthesis 97.0 0.0025 8.4E-08 56.8 8.6 23 37-59 108-130 (296)
257 3cm0_A Adenylate kinase; ATP-b 97.0 0.00048 1.7E-08 56.6 3.7 22 37-58 7-28 (186)
258 1nks_A Adenylate kinase; therm 97.0 0.00042 1.4E-08 57.2 3.3 23 37-59 4-26 (194)
259 1gvn_B Zeta; postsegregational 96.9 0.00051 1.7E-08 61.0 3.9 22 37-58 36-57 (287)
260 2p5t_B PEZT; postsegregational 96.9 0.00038 1.3E-08 60.6 3.0 22 37-58 35-56 (253)
261 2iyv_A Shikimate kinase, SK; t 96.9 0.00058 2E-08 56.1 3.9 23 37-59 5-27 (184)
262 1nrj_B SR-beta, signal recogni 96.9 0.0094 3.2E-07 50.0 11.6 27 32-58 10-36 (218)
263 2xau_A PRE-mRNA-splicing facto 96.9 0.0056 1.9E-07 61.9 11.8 21 37-57 112-132 (773)
264 1y63_A LMAJ004144AAA protein; 96.9 0.00064 2.2E-08 56.0 4.1 23 35-57 11-33 (184)
265 2j41_A Guanylate kinase; GMP, 96.9 0.00043 1.5E-08 57.9 3.1 22 37-58 9-30 (207)
266 3tlx_A Adenylate kinase 2; str 96.9 0.001 3.6E-08 57.4 5.6 23 36-58 31-53 (243)
267 2orv_A Thymidine kinase; TP4A 96.9 0.0036 1.2E-07 53.1 8.6 36 130-169 90-125 (234)
268 2ze6_A Isopentenyl transferase 96.9 0.00059 2E-08 59.4 4.0 23 37-59 4-26 (253)
269 2rhm_A Putative kinase; P-loop 96.9 0.00048 1.6E-08 56.9 3.2 22 37-58 8-29 (193)
270 1rz3_A Hypothetical protein rb 96.9 0.0013 4.3E-08 55.0 5.9 38 21-58 6-46 (201)
271 1sq5_A Pantothenate kinase; P- 96.9 0.00088 3E-08 60.1 5.1 32 37-68 83-115 (308)
272 1aky_A Adenylate kinase; ATP:A 96.9 0.00071 2.4E-08 57.4 4.2 24 36-59 6-29 (220)
273 2qor_A Guanylate kinase; phosp 96.9 0.00065 2.2E-08 56.9 3.9 22 37-58 15-36 (204)
274 2bbw_A Adenylate kinase 4, AK4 96.9 0.00059 2E-08 59.0 3.7 23 36-58 29-51 (246)
275 3fb4_A Adenylate kinase; psych 96.9 0.00069 2.4E-08 57.2 3.9 22 37-58 3-24 (216)
276 1e6c_A Shikimate kinase; phosp 96.9 0.00068 2.3E-08 55.0 3.7 22 37-58 5-26 (173)
277 1svm_A Large T antigen; AAA+ f 96.9 0.00075 2.6E-08 62.1 4.3 22 37-58 172-193 (377)
278 3lw7_A Adenylate kinase relate 96.8 0.00059 2E-08 55.2 3.3 21 37-58 4-24 (179)
279 3b9q_A Chloroplast SRP recepto 96.8 0.00053 1.8E-08 61.3 3.2 34 37-71 103-136 (302)
280 3tau_A Guanylate kinase, GMP k 96.8 0.0006 2.1E-08 57.4 3.4 22 37-58 11-32 (208)
281 1cke_A CK, MSSA, protein (cyti 96.8 0.00067 2.3E-08 57.7 3.7 23 36-58 7-29 (227)
282 3euj_A Chromosome partition pr 96.8 0.00081 2.8E-08 63.8 4.5 37 36-73 31-67 (483)
283 3dl0_A Adenylate kinase; phosp 96.8 0.00067 2.3E-08 57.3 3.6 22 37-58 3-24 (216)
284 2cdn_A Adenylate kinase; phosp 96.8 0.00078 2.7E-08 56.2 4.0 23 37-59 23-45 (201)
285 3cmu_A Protein RECA, recombina 96.8 0.0033 1.1E-07 68.9 9.6 26 37-62 1084-1109(2050)
286 2c95_A Adenylate kinase 1; tra 96.8 0.0008 2.7E-08 55.7 3.9 23 36-58 11-33 (196)
287 1tev_A UMP-CMP kinase; ploop, 96.8 0.00076 2.6E-08 55.7 3.7 22 37-58 6-27 (196)
288 1odf_A YGR205W, hypothetical 3 96.8 0.0017 5.7E-08 57.7 6.1 23 37-59 34-56 (290)
289 3asz_A Uridine kinase; cytidin 96.8 0.00064 2.2E-08 57.2 3.2 22 37-58 9-30 (211)
290 2plr_A DTMP kinase, probable t 96.8 0.00078 2.7E-08 56.5 3.7 24 37-60 7-30 (213)
291 2jaq_A Deoxyguanosine kinase; 96.8 0.00079 2.7E-08 56.1 3.7 23 37-59 3-25 (205)
292 2pt5_A Shikimate kinase, SK; a 96.8 0.00099 3.4E-08 53.7 4.0 23 37-59 3-25 (168)
293 1qf9_A UMP/CMP kinase, protein 96.8 0.00097 3.3E-08 55.0 4.0 22 37-58 9-30 (194)
294 3zvl_A Bifunctional polynucleo 96.8 0.005 1.7E-07 57.6 9.2 22 37-58 261-282 (416)
295 4b3f_X DNA-binding protein smu 96.7 0.0023 7.9E-08 63.5 7.3 42 18-61 191-232 (646)
296 3fmo_B ATP-dependent RNA helic 96.7 0.019 6.7E-07 51.0 12.7 44 129-172 234-279 (300)
297 2r6a_A DNAB helicase, replicat 96.7 0.0053 1.8E-07 58.1 9.4 23 37-59 206-228 (454)
298 1zak_A Adenylate kinase; ATP:A 96.7 0.00093 3.2E-08 56.7 3.8 24 36-59 7-30 (222)
299 2vli_A Antibiotic resistance p 96.7 0.00059 2E-08 55.9 2.4 24 36-59 7-30 (183)
300 2bwj_A Adenylate kinase 5; pho 96.7 0.00081 2.8E-08 55.8 3.3 22 37-58 15-36 (199)
301 2obl_A ESCN; ATPase, hydrolase 96.7 0.00082 2.8E-08 61.3 3.5 48 19-70 59-106 (347)
302 3sr0_A Adenylate kinase; phosp 96.7 0.00094 3.2E-08 56.1 3.6 22 37-58 3-24 (206)
303 1ak2_A Adenylate kinase isoenz 96.7 0.0013 4.4E-08 56.4 4.4 23 36-58 18-40 (233)
304 1qde_A EIF4A, translation init 96.7 0.013 4.4E-07 49.5 10.7 44 129-172 154-198 (224)
305 3pey_A ATP-dependent RNA helic 96.7 0.012 4.3E-07 53.9 11.4 44 128-171 143-188 (395)
306 2dpy_A FLII, flagellum-specifi 96.7 0.00096 3.3E-08 62.8 3.7 49 19-71 145-193 (438)
307 3ney_A 55 kDa erythrocyte memb 96.7 0.0014 4.7E-08 54.5 4.3 22 37-58 22-43 (197)
308 2pbr_A DTMP kinase, thymidylat 96.7 0.001 3.6E-08 54.8 3.6 22 37-58 3-24 (195)
309 2pez_A Bifunctional 3'-phospho 96.7 0.0013 4.4E-08 53.7 4.1 22 37-58 8-29 (179)
310 2z0h_A DTMP kinase, thymidylat 96.7 0.0011 3.6E-08 55.0 3.6 22 37-58 3-24 (197)
311 2yvu_A Probable adenylyl-sulfa 96.7 0.0011 3.7E-08 54.5 3.7 23 37-59 16-38 (186)
312 3cmw_A Protein RECA, recombina 96.7 0.0012 4.2E-08 71.3 4.9 24 37-60 735-758 (1706)
313 3be4_A Adenylate kinase; malar 96.7 0.00099 3.4E-08 56.4 3.4 23 36-58 7-29 (217)
314 1rif_A DAR protein, DNA helica 96.7 0.015 5.2E-07 51.0 11.3 41 129-172 224-264 (282)
315 3tqc_A Pantothenate kinase; bi 96.6 0.002 7E-08 57.8 5.5 23 37-59 95-117 (321)
316 1zd8_A GTP:AMP phosphotransfer 96.6 0.00088 3E-08 57.1 3.0 23 36-58 9-31 (227)
317 2og2_A Putative signal recogni 96.6 0.00092 3.1E-08 61.1 3.2 34 37-71 160-193 (359)
318 1ukz_A Uridylate kinase; trans 96.6 0.0012 4E-08 55.1 3.7 23 36-58 17-39 (203)
319 2wwf_A Thymidilate kinase, put 96.6 0.001 3.4E-08 55.9 3.2 24 37-60 13-36 (212)
320 3umf_A Adenylate kinase; rossm 96.6 0.0012 4.2E-08 55.8 3.7 22 37-58 32-53 (217)
321 3bh0_A DNAB-like replicative h 96.6 0.02 6.7E-07 51.4 11.9 25 37-61 71-95 (315)
322 1ex7_A Guanylate kinase; subst 96.6 0.0012 4.1E-08 54.4 3.5 22 37-58 4-25 (186)
323 1jjv_A Dephospho-COA kinase; P 96.6 0.00089 3E-08 56.1 2.8 20 37-56 5-24 (206)
324 2if2_A Dephospho-COA kinase; a 96.6 0.00096 3.3E-08 55.7 3.0 21 37-58 4-24 (204)
325 3lnc_A Guanylate kinase, GMP k 96.6 0.00048 1.6E-08 58.9 1.1 21 37-57 30-51 (231)
326 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.00068 2.3E-08 64.2 2.3 42 26-70 132-175 (460)
327 1zu4_A FTSY; GTPase, signal re 96.6 0.0092 3.2E-07 53.6 9.6 24 37-60 108-131 (320)
328 3ux8_A Excinuclease ABC, A sub 96.6 0.0074 2.5E-07 60.1 9.8 42 130-171 564-607 (670)
329 2xb4_A Adenylate kinase; ATP-b 96.6 0.0012 4.3E-08 56.1 3.7 22 37-58 3-24 (223)
330 1e4v_A Adenylate kinase; trans 96.6 0.0011 3.9E-08 55.9 3.2 22 37-58 3-24 (214)
331 1m7g_A Adenylylsulfate kinase; 96.6 0.0025 8.5E-08 53.6 5.2 24 36-59 27-50 (211)
332 3e2i_A Thymidine kinase; Zn-bi 96.6 0.0019 6.5E-08 54.1 4.3 39 129-170 100-138 (219)
333 2vf7_A UVRA2, excinuclease ABC 96.6 0.0036 1.2E-07 63.4 7.2 42 131-172 752-795 (842)
334 3h1t_A Type I site-specific re 96.5 0.0066 2.3E-07 59.5 9.0 42 18-60 183-224 (590)
335 1nn5_A Similar to deoxythymidy 96.5 0.0012 4.2E-08 55.4 3.2 23 37-59 12-34 (215)
336 1qhl_A Protein (cell division 96.5 0.00055 1.9E-08 58.4 1.0 34 37-71 30-63 (227)
337 3lxx_A GTPase IMAP family memb 96.5 0.032 1.1E-06 47.6 12.3 22 36-57 31-52 (239)
338 2wsm_A Hydrogenase expression/ 96.5 0.0016 5.6E-08 55.0 3.9 42 17-58 13-54 (221)
339 2qm8_A GTPase/ATPase; G protei 96.5 0.00077 2.6E-08 61.3 1.9 34 36-70 57-90 (337)
340 2v54_A DTMP kinase, thymidylat 96.5 0.0012 4.2E-08 55.0 3.0 22 37-58 7-28 (204)
341 4gzl_A RAS-related C3 botulinu 96.5 0.0084 2.9E-07 49.9 8.0 41 17-57 13-53 (204)
342 3aez_A Pantothenate kinase; tr 96.5 0.0016 5.4E-08 58.5 3.7 23 37-59 93-115 (312)
343 4e22_A Cytidylate kinase; P-lo 96.5 0.0015 5.3E-08 56.6 3.5 23 36-58 29-51 (252)
344 2qnr_A Septin-2, protein NEDD5 96.5 0.0099 3.4E-07 53.0 8.9 21 37-57 21-41 (301)
345 3kta_A Chromosome segregation 96.5 0.0018 6.2E-08 52.9 3.6 23 37-59 29-51 (182)
346 2pl3_A Probable ATP-dependent 96.4 0.022 7.6E-07 48.4 10.6 44 129-172 170-214 (236)
347 3r20_A Cytidylate kinase; stru 96.4 0.0019 6.5E-08 55.2 3.7 23 36-58 11-33 (233)
348 3vkw_A Replicase large subunit 96.4 0.0039 1.3E-07 58.3 5.9 37 131-171 235-271 (446)
349 2oxc_A Probable ATP-dependent 96.4 0.025 8.4E-07 48.0 10.7 43 129-171 165-209 (230)
350 2dr3_A UPF0273 protein PH0284; 96.4 0.0018 6E-08 55.7 3.3 33 37-69 26-58 (247)
351 2hf9_A Probable hydrogenase ni 96.4 0.0038 1.3E-07 52.8 5.3 42 19-60 23-64 (226)
352 2nzj_A GTP-binding protein REM 96.3 0.0051 1.8E-07 49.4 5.6 20 37-56 7-26 (175)
353 2qag_B Septin-6, protein NEDD5 96.3 0.0011 3.7E-08 61.9 1.6 36 22-57 30-65 (427)
354 3fht_A ATP-dependent RNA helic 96.3 0.036 1.2E-06 51.2 12.1 43 129-171 167-211 (412)
355 1uj2_A Uridine-cytidine kinase 96.3 0.0023 7.7E-08 55.5 3.6 23 37-59 25-47 (252)
356 2f1r_A Molybdopterin-guanine d 96.3 0.00064 2.2E-08 55.3 0.0 35 36-70 4-40 (171)
357 1hv8_A Putative ATP-dependent 96.3 0.027 9.4E-07 51.0 11.1 43 129-171 146-189 (367)
358 3ake_A Cytidylate kinase; CMP 96.3 0.0024 8.4E-08 53.2 3.6 23 36-58 4-26 (208)
359 2grj_A Dephospho-COA kinase; T 96.3 0.0028 9.7E-08 52.5 3.9 22 37-58 15-36 (192)
360 3iuy_A Probable ATP-dependent 96.3 0.042 1.4E-06 46.4 11.4 44 129-172 166-210 (228)
361 1xjc_A MOBB protein homolog; s 96.3 0.0034 1.2E-07 50.8 4.1 26 34-59 4-29 (169)
362 2qt1_A Nicotinamide riboside k 96.2 0.0018 6E-08 54.3 2.4 22 37-58 24-45 (207)
363 3bor_A Human initiation factor 96.2 0.014 4.9E-07 49.8 8.3 43 129-171 172-215 (237)
364 3ber_A Probable ATP-dependent 96.2 0.022 7.5E-07 49.1 9.5 44 129-172 185-229 (249)
365 1kao_A RAP2A; GTP-binding prot 96.2 0.041 1.4E-06 43.4 10.5 21 37-57 6-26 (167)
366 1vec_A ATP-dependent RNA helic 96.2 0.028 9.7E-07 46.5 9.8 43 129-171 145-188 (206)
367 1gtv_A TMK, thymidylate kinase 96.2 0.0011 3.9E-08 55.6 1.1 23 37-59 3-25 (214)
368 3crm_A TRNA delta(2)-isopenten 96.2 0.0025 8.6E-08 57.1 3.4 22 37-58 8-29 (323)
369 4eaq_A DTMP kinase, thymidylat 96.2 0.0029 1E-07 54.0 3.7 24 37-60 29-52 (229)
370 1uf9_A TT1252 protein; P-loop, 96.2 0.0027 9.4E-08 52.7 3.3 22 36-57 10-31 (203)
371 3cr8_A Sulfate adenylyltranfer 96.2 0.0038 1.3E-07 60.4 4.7 42 19-60 352-395 (552)
372 1u8z_A RAS-related protein RAL 96.2 0.012 4.1E-07 46.6 7.0 21 37-57 7-27 (168)
373 2ce2_X GTPase HRAS; signaling 96.1 0.0097 3.3E-07 47.0 6.3 21 37-57 6-26 (166)
374 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0036 1.2E-07 49.5 3.6 24 37-60 26-49 (149)
375 2yv5_A YJEQ protein; hydrolase 96.1 0.0056 1.9E-07 54.6 5.3 30 37-68 168-197 (302)
376 1nij_A Hypothetical protein YJ 96.1 0.0022 7.7E-08 57.7 2.5 39 34-72 4-49 (318)
377 1ltq_A Polynucleotide kinase; 96.1 0.0035 1.2E-07 55.7 3.8 21 37-57 5-25 (301)
378 1m7b_A RND3/RHOE small GTP-bin 96.1 0.021 7.3E-07 46.4 8.3 21 37-57 10-30 (184)
379 1s2m_A Putative ATP-dependent 96.1 0.12 4.1E-06 47.5 14.3 43 129-171 162-205 (400)
380 1g8f_A Sulfate adenylyltransfe 96.1 0.0071 2.4E-07 57.8 5.9 42 18-59 377-420 (511)
381 1q0u_A Bstdead; DEAD protein, 96.1 0.024 8.2E-07 47.6 8.7 44 129-172 149-193 (219)
382 1np6_A Molybdopterin-guanine d 96.0 0.0042 1.4E-07 50.6 3.7 25 35-59 7-31 (174)
383 1vht_A Dephospho-COA kinase; s 96.0 0.0035 1.2E-07 52.9 3.4 20 37-56 7-26 (218)
384 3ly5_A ATP-dependent RNA helic 96.0 0.012 4.2E-07 51.1 6.9 44 129-172 200-244 (262)
385 3fmp_B ATP-dependent RNA helic 96.0 0.03 1E-06 53.2 10.0 44 129-172 234-279 (479)
386 1z0j_A RAB-22, RAS-related pro 96.0 0.018 6E-07 45.8 7.3 21 37-57 9-29 (170)
387 3lxw_A GTPase IMAP family memb 96.0 0.25 8.7E-06 42.3 15.1 20 37-56 24-43 (247)
388 1lw7_A Transcriptional regulat 96.0 0.0033 1.1E-07 57.7 3.1 25 37-62 173-197 (365)
389 2bov_A RAla, RAS-related prote 96.0 0.018 6.2E-07 47.5 7.5 22 36-57 16-37 (206)
390 1u0l_A Probable GTPase ENGC; p 96.0 0.0029 9.8E-08 56.5 2.6 31 37-68 172-202 (301)
391 3con_A GTPase NRAS; structural 96.0 0.013 4.5E-07 47.8 6.5 21 37-57 24-44 (190)
392 3fe2_A Probable ATP-dependent 96.0 0.023 8E-07 48.6 8.3 44 129-172 175-219 (242)
393 2rcn_A Probable GTPase ENGC; Y 96.0 0.0015 5E-08 59.6 0.6 22 37-58 218-239 (358)
394 2oca_A DAR protein, ATP-depend 96.0 0.047 1.6E-06 52.2 11.2 37 19-58 116-152 (510)
395 1nlf_A Regulatory protein REPA 96.0 0.0038 1.3E-07 55.0 3.2 23 37-59 33-55 (279)
396 2v6i_A RNA helicase; membrane, 95.9 0.036 1.2E-06 52.0 10.1 21 35-55 3-24 (431)
397 2f9l_A RAB11B, member RAS onco 95.9 0.0043 1.5E-07 51.4 3.4 22 37-58 8-29 (199)
398 3llu_A RAS-related GTP-binding 95.9 0.029 9.9E-07 46.1 8.5 21 36-56 22-42 (196)
399 2a9k_A RAS-related protein RAL 95.9 0.016 5.5E-07 46.9 6.8 21 37-57 21-41 (187)
400 1mh1_A RAC1; GTP-binding, GTPa 95.9 0.027 9.3E-07 45.5 8.2 21 37-57 8-28 (186)
401 3foz_A TRNA delta(2)-isopenten 95.9 0.0055 1.9E-07 54.4 4.1 22 37-58 13-34 (316)
402 1oix_A RAS-related protein RAB 95.9 0.004 1.4E-07 51.4 3.0 22 37-58 32-53 (191)
403 1q3t_A Cytidylate kinase; nucl 95.9 0.0065 2.2E-07 52.0 4.3 23 36-58 18-40 (236)
404 1bif_A 6-phosphofructo-2-kinas 95.9 0.029 9.9E-07 53.3 9.2 25 37-61 42-66 (469)
405 3d3q_A TRNA delta(2)-isopenten 95.9 0.0047 1.6E-07 55.7 3.5 22 37-58 10-31 (340)
406 1gwn_A RHO-related GTP-binding 95.8 0.032 1.1E-06 46.4 8.3 21 37-57 31-51 (205)
407 1wp9_A ATP-dependent RNA helic 95.8 0.1 3.5E-06 48.9 12.8 44 128-171 123-167 (494)
408 2qmh_A HPR kinase/phosphorylas 95.8 0.004 1.4E-07 51.5 2.4 22 37-58 37-58 (205)
409 1xti_A Probable ATP-dependent 95.8 0.14 4.9E-06 46.7 13.3 44 128-171 150-195 (391)
410 4dhe_A Probable GTP-binding pr 95.8 0.12 4.1E-06 43.2 11.8 23 34-56 29-51 (223)
411 2atx_A Small GTP binding prote 95.7 0.047 1.6E-06 44.6 9.0 21 37-57 21-41 (194)
412 3gmt_A Adenylate kinase; ssgci 95.7 0.0073 2.5E-07 51.3 4.0 23 37-59 11-33 (230)
413 1z0f_A RAB14, member RAS oncog 95.7 0.032 1.1E-06 44.7 7.8 21 37-57 18-38 (179)
414 3qks_A DNA double-strand break 95.7 0.008 2.7E-07 50.2 4.1 24 37-60 26-49 (203)
415 2ged_A SR-beta, signal recogni 95.7 0.013 4.5E-07 47.9 5.4 22 36-57 50-71 (193)
416 3a8t_A Adenylate isopentenyltr 95.7 0.0043 1.5E-07 55.9 2.5 24 36-59 42-65 (339)
417 2z43_A DNA repair and recombin 95.7 0.0071 2.4E-07 54.5 4.0 24 37-60 110-133 (324)
418 4dsu_A GTPase KRAS, isoform 2B 95.7 0.022 7.5E-07 46.2 6.7 21 37-57 7-27 (189)
419 3fho_A ATP-dependent RNA helic 95.7 0.049 1.7E-06 52.2 10.0 44 129-172 258-303 (508)
420 2whx_A Serine protease/ntpase/ 95.7 0.051 1.8E-06 53.4 10.3 43 129-171 276-319 (618)
421 2va8_A SSO2462, SKI2-type heli 95.7 0.023 7.9E-07 57.0 8.0 20 35-54 47-66 (715)
422 3q3j_B RHO-related GTP-binding 95.7 0.047 1.6E-06 45.6 8.8 21 37-57 30-50 (214)
423 2ffh_A Protein (FFH); SRP54, s 95.7 0.041 1.4E-06 51.3 9.0 25 37-61 101-125 (425)
424 3oes_A GTPase rhebl1; small GT 95.7 0.14 4.9E-06 42.0 11.7 22 36-57 26-47 (201)
425 2xxa_A Signal recognition part 95.6 0.089 3E-06 49.2 11.4 25 37-61 103-127 (433)
426 1v5w_A DMC1, meiotic recombina 95.6 0.013 4.6E-07 53.1 5.5 22 37-58 125-146 (343)
427 3reg_A RHO-like small GTPase; 95.6 0.041 1.4E-06 45.0 8.1 21 37-57 26-46 (194)
428 3ihw_A Centg3; RAS, centaurin, 95.6 0.041 1.4E-06 44.8 7.9 21 37-57 23-43 (184)
429 3qf7_A RAD50; ABC-ATPase, ATPa 95.6 0.0086 3E-07 54.9 4.1 26 37-62 26-51 (365)
430 2atv_A RERG, RAS-like estrogen 95.6 0.024 8.3E-07 46.5 6.6 22 36-57 30-51 (196)
431 2f6r_A COA synthase, bifunctio 95.6 0.0059 2E-07 53.9 2.8 20 37-56 78-97 (281)
432 3dz8_A RAS-related protein RAB 95.5 0.026 8.8E-07 46.2 6.6 22 37-58 26-47 (191)
433 2h92_A Cytidylate kinase; ross 95.5 0.0078 2.7E-07 50.7 3.5 22 37-58 6-27 (219)
434 3bwd_D RAC-like GTP-binding pr 95.5 0.04 1.4E-06 44.3 7.7 22 36-57 10-31 (182)
435 2dyk_A GTP-binding protein; GT 95.5 0.0083 2.8E-07 47.4 3.4 23 35-57 2-24 (161)
436 2eyq_A TRCF, transcription-rep 95.5 0.16 5.4E-06 53.7 14.0 39 18-56 608-646 (1151)
437 3tw8_B RAS-related protein RAB 95.5 0.039 1.3E-06 44.3 7.5 21 36-56 11-31 (181)
438 4edh_A DTMP kinase, thymidylat 95.5 0.0088 3E-07 50.4 3.6 24 37-60 9-32 (213)
439 2j37_W Signal recognition part 95.5 0.11 3.9E-06 49.4 11.7 23 37-59 104-126 (504)
440 3t5g_A GTP-binding protein RHE 95.5 0.17 5.9E-06 40.5 11.4 21 36-56 8-28 (181)
441 2j0v_A RAC-like GTP-binding pr 95.5 0.054 1.9E-06 45.0 8.5 21 37-57 12-32 (212)
442 3dkp_A Probable ATP-dependent 95.5 0.12 4.2E-06 44.0 11.0 43 129-171 174-221 (245)
443 1j8m_F SRP54, signal recogniti 95.5 0.032 1.1E-06 49.5 7.3 23 37-59 101-123 (297)
444 2gk6_A Regulator of nonsense t 95.5 0.021 7.3E-07 56.3 6.7 40 18-60 182-221 (624)
445 3ld9_A DTMP kinase, thymidylat 95.4 0.011 3.7E-07 50.1 4.0 25 36-60 23-47 (223)
446 2p6r_A Afuhel308 helicase; pro 95.4 0.071 2.4E-06 53.3 10.5 43 129-171 137-183 (702)
447 1m8p_A Sulfate adenylyltransfe 95.4 0.012 3.9E-07 57.4 4.5 23 37-59 399-421 (573)
448 3tqf_A HPR(Ser) kinase; transf 95.4 0.0086 2.9E-07 48.3 2.9 20 37-56 19-38 (181)
449 3pih_A Uvrabc system protein A 95.4 0.11 3.8E-06 53.1 11.8 42 130-171 826-869 (916)
450 1a7j_A Phosphoribulokinase; tr 95.4 0.0044 1.5E-07 55.0 1.3 23 37-59 8-30 (290)
451 2www_A Methylmalonic aciduria 95.4 0.022 7.5E-07 51.8 6.0 23 36-58 76-98 (349)
452 2e87_A Hypothetical protein PH 95.3 0.067 2.3E-06 48.8 9.2 21 36-56 169-189 (357)
453 2wji_A Ferrous iron transport 95.3 0.0097 3.3E-07 47.6 3.2 20 37-56 6-25 (165)
454 2vp4_A Deoxynucleoside kinase; 95.3 0.0051 1.7E-07 52.5 1.5 21 37-57 23-43 (230)
455 2q6t_A DNAB replication FORK h 95.3 0.079 2.7E-06 49.8 9.8 23 37-59 203-225 (444)
456 3v9p_A DTMP kinase, thymidylat 95.3 0.0079 2.7E-07 51.2 2.6 23 37-59 28-50 (227)
457 3p32_A Probable GTPase RV1496/ 95.3 0.033 1.1E-06 50.7 6.9 26 35-60 80-105 (355)
458 2zj8_A DNA helicase, putative 95.2 0.03 1E-06 56.2 7.2 40 129-171 137-180 (720)
459 2zej_A Dardarin, leucine-rich 95.2 0.0087 3E-07 48.8 2.7 20 37-56 5-24 (184)
460 4dkx_A RAS-related protein RAB 95.2 0.066 2.2E-06 45.0 8.2 21 37-57 16-36 (216)
461 2gco_A H9, RHO-related GTP-bin 95.2 0.063 2.2E-06 44.2 8.0 21 37-57 28-48 (201)
462 1wf3_A GTP-binding protein; GT 95.2 0.5 1.7E-05 41.8 14.3 22 36-57 9-30 (301)
463 2hup_A RAS-related protein RAB 95.2 0.059 2E-06 44.5 7.7 21 37-57 32-52 (201)
464 2gks_A Bifunctional SAT/APS ki 95.2 0.019 6.4E-07 55.6 5.2 41 19-59 355-397 (546)
465 2j1l_A RHO-related GTP-binding 95.2 0.015 5.1E-07 48.8 3.9 20 37-56 37-56 (214)
466 2ocp_A DGK, deoxyguanosine kin 95.1 0.01 3.5E-07 50.9 3.0 22 37-58 5-26 (241)
467 4ag6_A VIRB4 ATPase, type IV s 95.1 0.018 6.3E-07 53.2 4.8 30 33-62 34-63 (392)
468 3lv8_A DTMP kinase, thymidylat 95.1 0.012 4.1E-07 50.4 3.2 24 37-60 30-53 (236)
469 3eiq_A Eukaryotic initiation f 95.1 0.068 2.3E-06 49.3 8.7 43 129-171 182-225 (414)
470 2q3h_A RAS homolog gene family 95.1 0.046 1.6E-06 45.0 6.8 22 36-57 22-43 (201)
471 2j0s_A ATP-dependent RNA helic 95.1 0.12 4E-06 47.8 10.2 43 129-171 178-221 (410)
472 3th5_A RAS-related C3 botulinu 94.1 0.0038 1.3E-07 51.9 0.0 25 32-56 28-52 (204)
473 1z2a_A RAS-related protein RAB 95.1 0.014 4.7E-07 46.4 3.3 21 37-57 8-28 (168)
474 3eph_A TRNA isopentenyltransfe 95.1 0.012 4.1E-07 54.3 3.2 22 37-58 5-26 (409)
475 2wjg_A FEOB, ferrous iron tran 95.0 0.011 3.9E-07 48.1 2.8 20 37-56 10-29 (188)
476 1mky_A Probable GTP-binding pr 95.0 0.13 4.5E-06 48.2 10.5 22 36-57 182-203 (439)
477 3qkt_A DNA double-strand break 95.0 0.017 5.8E-07 52.4 4.1 25 37-61 26-50 (339)
478 2z83_A Helicase/nucleoside tri 95.0 0.048 1.7E-06 51.6 7.4 23 36-58 23-46 (459)
479 1jql_B DNA polymerase III, del 95.0 0.42 1.4E-05 36.9 11.7 71 110-185 61-138 (140)
480 1yks_A Genome polyprotein [con 95.0 0.089 3E-06 49.4 9.1 21 36-56 10-31 (440)
481 4tmk_A Protein (thymidylate ki 95.0 0.015 5E-07 49.0 3.3 24 37-60 6-29 (213)
482 2wjy_A Regulator of nonsense t 94.9 0.038 1.3E-06 56.0 6.8 40 18-60 358-397 (800)
483 2gj8_A MNME, tRNA modification 94.9 0.012 4.2E-07 47.4 2.7 21 37-57 7-27 (172)
484 3tmk_A Thymidylate kinase; pho 94.9 0.015 5.1E-07 49.0 3.2 24 37-60 8-31 (216)
485 2lkc_A Translation initiation 94.9 0.018 6.2E-07 46.2 3.6 23 35-57 9-31 (178)
486 1ek0_A Protein (GTP-binding pr 94.9 0.017 5.7E-07 45.9 3.3 21 37-57 6-26 (170)
487 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.017 5.9E-07 46.3 3.4 21 37-57 10-30 (177)
488 2axn_A 6-phosphofructo-2-kinas 94.8 0.016 5.6E-07 55.7 3.7 25 37-61 38-62 (520)
489 1z08_A RAS-related protein RAB 94.8 0.018 6E-07 45.9 3.4 21 37-57 9-29 (170)
490 1p5z_B DCK, deoxycytidine kina 94.8 0.0065 2.2E-07 52.9 0.7 22 37-58 27-48 (263)
491 2zpa_A Uncharacterized protein 94.8 0.021 7.3E-07 56.0 4.5 39 20-59 179-217 (671)
492 2yc2_C IFT27, small RAB-relate 94.8 0.048 1.6E-06 45.0 6.1 21 37-57 23-43 (208)
493 1ky3_A GTP-binding protein YPT 94.8 0.018 6.3E-07 46.3 3.4 22 36-57 10-31 (182)
494 1c1y_A RAS-related protein RAP 94.7 0.019 6.6E-07 45.4 3.3 21 37-57 6-26 (167)
495 1c9k_A COBU, adenosylcobinamid 94.7 0.016 5.6E-07 47.2 2.8 21 37-57 2-22 (180)
496 1g16_A RAS-related protein SEC 94.7 0.017 5.7E-07 45.9 3.0 21 37-57 6-26 (170)
497 2qtf_A Protein HFLX, GTP-bindi 94.7 0.21 7.3E-06 45.5 10.6 22 36-57 181-202 (364)
498 2erx_A GTP-binding protein DI- 94.7 0.017 5.8E-07 46.0 2.9 20 37-56 6-25 (172)
499 1r8s_A ADP-ribosylation factor 94.6 0.021 7E-07 45.2 3.3 21 37-57 3-23 (164)
500 1r2q_A RAS-related protein RAB 94.6 0.021 7.1E-07 45.3 3.3 21 37-57 9-29 (170)
No 1
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=7.6e-45 Score=338.56 Aligned_cols=323 Identities=37% Similarity=0.685 Sum_probs=258.3
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHH-HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l-~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
|+|++||||++|++++|++.+++.++.++ ..++.+|++|+||+|+||||+++++++.+.++..+.+.+++..+ ..|+.
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~-~~~~~ 80 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF-VTASN 80 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee-ccccc
Confidence 59999999999999999999999999999 88888889999999999999999999999898888877777666 44555
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCC----CCC-CCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID----TKG-KRGFKVLVLNEVDKLSREAQHSLRRTM 154 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~-~~~~~vliiDE~~~L~~~~~~~Ll~~l 154 (365)
.+..+ .......++.+.+.+.+......+++.++.+....++. +++ .++++|+||||++.|+..+++.|++++
T Consensus 81 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 81 RKLEL--NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp -------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred cccee--eeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence 54444 44444555666555444333224666666665444321 012 457899999999999999999999999
Q ss_pred hhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Q 017844 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 155 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~-~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
++++.++.+|++|+++.++.++++|||..++|++|+.+++.+++..++.++|+.++ +++++.+++.++||+|+|++.++
T Consensus 159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99988999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhcCC-CCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--hCCHHHH
Q 017844 234 TCRVQQY-PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--RLDAEIK 310 (365)
Q Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~--~~~~~~~ 310 (365)
.++.+.. .++.+..+...+++..+++++++++..+....+..+++.+++++..|.++..|+.++.+++.+ .++...+
T Consensus 239 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~l 318 (354)
T 1sxj_E 239 SMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNK 318 (354)
T ss_dssp HHHHTTTTEECSSCCCCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHH
T ss_pred HHHHhCCCCcCcCcCCCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHH
Confidence 9988765 466655566677888999999999988888899999999999999999999999999999887 7889999
Q ss_pred HHHHHHHHHhhhhhHH
Q 017844 311 HEVCHWAAYYVSISFQ 326 (365)
Q Consensus 311 ~~~~~~~~~~~~~~~~ 326 (365)
.++.+.++.+++++..
T Consensus 319 ~~~~~~l~~~d~~l~~ 334 (354)
T 1sxj_E 319 SSIIEYSSVFDERLSL 334 (354)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988543
No 2
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=4.6e-37 Score=282.60 Aligned_cols=278 Identities=22% Similarity=0.325 Sum_probs=222.1
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
.+|++||||++|++++|++++++.++.++..++.++ ++++||||+|||++++++++.+.. .
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~---~--------------- 75 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA---D--------------- 75 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE---E---------------
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC---C---------------
Confidence 479999999999999999999999999999999888 788899999999999999997621 0
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHhhhc
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYS 158 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-~~~~~~Ll~~le~~~ 158 (365)
++++++++.+ ...+++.+..+....+. .+++++++|||+|.++ .+.++.|++++++++
T Consensus 76 --------------~~~i~~~~~~---~~~i~~~~~~~~~~~~~----~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~ 134 (324)
T 3u61_B 76 --------------MMFVNGSDCK---IDFVRGPLTNFASAASF----DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS 134 (324)
T ss_dssp --------------EEEEETTTCC---HHHHHTHHHHHHHBCCC----SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG
T ss_pred --------------EEEEcccccC---HHHHHHHHHHHHhhccc----CCCCeEEEEECCcccCcHHHHHHHHHHHHhCC
Confidence 1223333322 22455656666655443 4577999999999999 999999999999998
Q ss_pred CceeEEEEecCCCcccHHHhccceeEEecCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCHHHHHH
Q 017844 159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ-------IVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAIL 230 (365)
Q Consensus 159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~-------~~~iL~~~~~~~~~~i~~-~~~~~i~~~~~g~lr~ai~ 230 (365)
.++.+|++||...++.++++|||.++.|++|+.++ +.+++..++.++++.+++ ++++.+++.++||+|.+++
T Consensus 135 ~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 135 SNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp GGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred CCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence 89999999999999999999999999999999887 455566777889999998 9999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHH
Q 017844 231 SFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIK 310 (365)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~~~~~ 310 (365)
.|+.++ ..+.++.+..-......+.++++++.+.. .+..+++..+++++. +|..++.++++++.+.++....
T Consensus 215 ~L~~~~-~~~~i~~~~v~~~~~~~~~i~~~~~~~~~----~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~~~~~~~l 286 (324)
T 3u61_B 215 ELDSYS-SKGVLDAGILSLVTNDRGAIDDVLESLKN----KDVKQLRALAPKYAA---DYSWFVGKLAEEIYSRVTPQSI 286 (324)
T ss_dssp HHHHHG-GGTCBCC------------CHHHHHHHHT----TCHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHh-ccCCCCHHHHHHHhCCHHHHHHHHHHHHc----CCHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhCCHHHH
Confidence 999998 33345444311111113356677776654 456777788888776 8999999999999999999999
Q ss_pred HHHHHHHHHhhhhhH
Q 017844 311 HEVCHWAAYYVSISF 325 (365)
Q Consensus 311 ~~~~~~~~~~~~~~~ 325 (365)
.++.+.++.+++++.
T Consensus 287 ~~i~~~l~~~d~~l~ 301 (324)
T 3u61_B 287 IRMYEIVGENNQYHG 301 (324)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998754
No 3
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=7.5e-37 Score=282.94 Aligned_cols=288 Identities=28% Similarity=0.459 Sum_probs=230.7
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
++|++||||++|++++|++++++.|..+++.|+.+|++|+||+|+||||+++++++.+.+.....
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~--------------- 77 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN--------------- 77 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHH---------------
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccc---------------
Confidence 48999999999999999999999999999999999999999999999999999999886543110
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
.+.+++..+.. ....+++.+..+...... ..++++|++|||+|.++.+++++|++++|+++.+
T Consensus 78 ------------~~~~~~~~~~~--~~~~ir~~i~~~~~~~~~---~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~ 140 (340)
T 1sxj_C 78 ------------MVLELNASDDR--GIDVVRNQIKDFASTRQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140 (340)
T ss_dssp ------------HEEEECTTSCC--SHHHHHTHHHHHHHBCCS---SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT
T ss_pred ------------eEEEEcCcccc--cHHHHHHHHHHHHhhccc---CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence 01222222211 122455556655543221 1345799999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~ 240 (365)
+.||+++|...++.++++|||..+.|.+++.+++.+++.+++.++++.++++++..+++.++||+|++++.|+.++....
T Consensus 141 ~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~ 220 (340)
T 1sxj_C 141 TRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLD 220 (340)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTC
T ss_pred eEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999998765543
Q ss_pred -----CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCC-HHHH
Q 017844 241 -----PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLD-AEIK 310 (365)
Q Consensus 241 -----~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~-~~~~~~~il~~l~~~l~~-~~~-~~~~ 310 (365)
.++.+. .+........++++++.+.. ++..++...+++++. .|.+|..++..+..++.. .++ ....
T Consensus 221 ~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~~----~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~ 296 (340)
T 1sxj_C 221 NPDEDEISDDVIYECCGAPRPSDLKAVLKSILE----DDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETR 296 (340)
T ss_dssp SSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHHT----SCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHH
T ss_pred CcccccccHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence 222221 11222345678888888876 355778888889987 999999999999988865 455 6777
Q ss_pred HHHHHHHHHhhhhh
Q 017844 311 HEVCHWAAYYVSIS 324 (365)
Q Consensus 311 ~~~~~~~~~~~~~~ 324 (365)
.++.+.++.++.++
T Consensus 297 ~~~~~~l~~~~~~l 310 (340)
T 1sxj_C 297 VHLLTKLADIEYSI 310 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777664
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=1.3e-35 Score=271.92 Aligned_cols=288 Identities=33% Similarity=0.513 Sum_probs=227.1
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
++|++||||++|++++|++.+++.+..++..++.+|++|+||+|+|||++++.+++.+.++.... .
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~------~-------- 70 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD------N-------- 70 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHH------H--------
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccC------C--------
Confidence 48999999999999999999999999999999888899999999999999999999876543210 0
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
++.+.+.+.... ..+++.+..+....+. ..+++++++|||+|.++.+.++.|++++++++.+
T Consensus 71 -------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~ 132 (319)
T 2chq_A 71 -------------FIEMNASDERGI--DVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKS 132 (319)
T ss_dssp -------------CEEEETTSTTCT--TTSSHHHHHHHHSCCS---SSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSS
T ss_pred -------------eEEEeCccccCh--HHHHHHHHHHHhcCCC---CCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCC
Confidence 011111111110 1123444444433332 2356799999999999999999999999999889
Q ss_pred eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~ 240 (365)
+.+|++|+...++.+++++||..+.|++++.+++.+++..++.++|+.+++++++.+++.++||+|.+++.++.++....
T Consensus 133 ~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~ 212 (319)
T 2chq_A 133 CRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE 212 (319)
T ss_dssp EEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSS
T ss_pred CeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 017844 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLDAEIKHEVCHW 316 (365)
Q Consensus 241 ~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~-~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~ 316 (365)
.++.+. .+........++++++++.. ++..++...+.+++. .|.+|..++..+..++.. .++.....++.+.
T Consensus 213 ~i~~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~ 288 (319)
T 2chq_A 213 VVDADTIYQITATARPEEMTELIQTALK----GNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDK 288 (319)
T ss_dssp CBCHHHHHHHTTCCCHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 444332 22233345678888888876 345677777888887 899999999998888765 4666666667776
Q ss_pred HHHhhhhh
Q 017844 317 AAYYVSIS 324 (365)
Q Consensus 317 ~~~~~~~~ 324 (365)
+...+.++
T Consensus 289 l~~~~~~l 296 (319)
T 2chq_A 289 LGEVDFRL 296 (319)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
No 5
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=1.3e-35 Score=277.97 Aligned_cols=335 Identities=19% Similarity=0.226 Sum_probs=246.1
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+|++||||++|++++|++++++.+..++..++.+| ++|+||+|+|||++++.+++.+.+..... ..||+.
T Consensus 5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~~~~ 75 (373)
T 1jr3_A 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGV 75 (373)
T ss_dssp CHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSCCSS
T ss_pred HHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcc
Confidence 69999999999999999999999999999998888 89999999999999999999887654211 223333
Q ss_pred ceeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
|..+ ...... ..+.+.+...... ..+++++..+.. .+ ..++++|+||||+|.++.+.++.|+++++++
T Consensus 76 ~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~----~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~ 146 (373)
T 1jr3_A 76 CDNC--REIEQGRFVDLIEIDAASRTKV--EDTRDLLDNVQY-AP----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 (373)
T ss_dssp SHHH--HHHHTSCCSSCEEEETTCSCCS--SCHHHHHHHTTS-CC----SSSSSEEEEEECGGGSCHHHHHHHHHHHHSC
T ss_pred cHHH--HHHhccCCCceEEecccccCCH--HHHHHHHHHHhh-cc----ccCCeEEEEEECcchhcHHHHHHHHHHHhcC
Confidence 3222 212222 2233332221111 124555554332 22 2456799999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.+|++++...++.+++++||..++|++++.+++.+++..++.++|+.+++++++.+++.++||+|.+.++++.+..
T Consensus 147 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 (373)
T ss_dssp CSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h------
Q 017844 238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R------ 304 (365)
Q Consensus 238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~------ 304 (365)
++. .++.+. .+........++++++++..+ +..++...+.++...|.++..++..+..++.+ +
T Consensus 227 ~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~ 302 (373)
T 1jr3_A 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA----NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 (373)
T ss_dssp HTTTCBCHHHHHHHTTCCCHHHHHHHHHHHHHT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCC
T ss_pred hcCCcccHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 543 233221 112222356678888888764 34556666778888999999998888877654 1
Q ss_pred --CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844 305 --LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD 359 (365)
Q Consensus 305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (365)
+.+.....+...+..|+......++. .+.+....+|....+.+ +|+.|++++.-
T Consensus 303 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~-~l~~~~~~lk~~~~~~l~le~~ll~~~~~ 359 (373)
T 1jr3_A 303 GNDMAAIELRMRELARTIPPTDIQLYYQ-TLLIGRKELPYAPDRRMGVEMTLLRALAF 359 (373)
T ss_dssp CSGGGGTHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 11233556667777777653333332 23444334556667777 99999988643
No 6
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=5.3e-35 Score=268.81 Aligned_cols=288 Identities=34% Similarity=0.538 Sum_probs=227.8
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
++|++||+|.+|++++|++++++.+..++..++.+|++|+||+|+|||++++.+++.+.++....
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~--------------- 77 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRH--------------- 77 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHH---------------
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccC---------------
Confidence 58999999999999999999999999999999988999999999999999999999875432100
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
.++.+.+.+.. ....+++.+..+....+. ..+++++++|||++.++.+.++.|++++++++.+
T Consensus 78 ------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~ 140 (327)
T 1iqp_A 78 ------------NFLELNASDER--GINVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSN 140 (327)
T ss_dssp ------------HEEEEETTCHH--HHHTTHHHHHHHHHSCCG---GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred ------------ceEEeeccccC--chHHHHHHHHHHHhhCCc---CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCC
Confidence 01222222110 001233444444443333 1256789999999999999999999999999889
Q ss_pred eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~ 240 (365)
+.||++++.+.++.+++.+||..+.|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++.++....
T Consensus 141 ~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 220 (327)
T 1iqp_A 141 VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 220 (327)
T ss_dssp EEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred CeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876654
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 017844 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHW 316 (365)
Q Consensus 241 ~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~ 316 (365)
.++.+. ..........++++++.+... +...+.+.+++++ ..|.+|..++..+..++.+ .++.....++...
T Consensus 221 ~i~~~~v~~~~~~~~~~~i~~l~~~~~~~----~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~ 296 (327)
T 1iqp_A 221 KITDENVFMVASRARPEDIREMMLLALKG----NFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADK 296 (327)
T ss_dssp EECHHHHHHHTTCCCHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 443322 122233456778888888763 4566677788888 8899999999999998766 5777777777777
Q ss_pred HHHhhhhh
Q 017844 317 AAYYVSIS 324 (365)
Q Consensus 317 ~~~~~~~~ 324 (365)
+...+.++
T Consensus 297 l~~~~~~l 304 (327)
T 1iqp_A 297 IGEYNFRL 304 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 7
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=7.6e-34 Score=264.01 Aligned_cols=292 Identities=27% Similarity=0.471 Sum_probs=221.4
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
.+|++||||.+|++++|++++++.+..++..+..+|++|+||||+||||+++++++.+.++....
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~--------------- 89 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMK--------------- 89 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHT---------------
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccc---------------
Confidence 48999999999999999999999999999999888899999999999999999999875321100
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCC-------CCCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-------TKGKRGFKVLVLNEVDKLSREAQHSLRRT 153 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~vliiDE~~~L~~~~~~~Ll~~ 153 (365)
...+++.+.+... ...+++.+..+....... ....++++|++|||++.++...++.|++.
T Consensus 90 -----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~ 156 (353)
T 1sxj_D 90 -----------SRILELNASDERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRT 156 (353)
T ss_dssp -----------TSEEEECSSSCCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHH
T ss_pred -----------cceEEEccccccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHH
Confidence 0012222222111 112233333333221100 00124568999999999999999999999
Q ss_pred HhhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 154 le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
+++++.+++||++++.+..+.+++++||..+.|++++.+++..++..++.++++.+++++++.+++.++||+|.+++.++
T Consensus 157 le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 157 METYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp HHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC------CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Q 017844 234 TCRVQQY------PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-- 303 (365)
Q Consensus 234 ~~~~~~~------~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-- 303 (365)
.++...+ .++.++ .+........++++++++.. ++...+...+++++..|.+|..|+..+.+++..
T Consensus 237 ~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~ 312 (353)
T 1sxj_D 237 SASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKS----GDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITND 312 (353)
T ss_dssp HTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHS----CCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCS
T ss_pred HHHHhcCCCccCccccHHHHHHHhCCCCHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8765432 233221 01111122456677777764 345667777888999999999999999998876
Q ss_pred hCCHHHHHHHHHHHHHhhhhh
Q 017844 304 RLDAEIKHEVCHWAAYYVSIS 324 (365)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~ 324 (365)
.++......+...++..+.++
T Consensus 313 ~~~~~~~~~~~~~l~~~~~~l 333 (353)
T 1sxj_D 313 NFDTNFKNQISWLLFTTDSRL 333 (353)
T ss_dssp SSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 467777777777777766654
No 8
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=8.3e-33 Score=253.71 Aligned_cols=286 Identities=23% Similarity=0.353 Sum_probs=216.2
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
++|++||+|.+|++++|++.+++.+..++..++.+|++|+||+|+|||++++.+++.+.++....
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~--------------- 73 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYAD--------------- 73 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHH---------------
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccC---------------
Confidence 47999999999999999999999999999999988899999999999999999999875432110
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
..+.+.+.+.. ....+++.+..+...... . ..++++++||||++.++...++.|++++++++.+
T Consensus 74 ------------~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~-~-~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~ 137 (323)
T 1sxj_B 74 ------------GVLELNASDDR--GIDVVRNQIKHFAQKKLH-L-PPGKHKIVILDEADSMTAGAQQALRRTMELYSNS 137 (323)
T ss_dssp ------------HEEEECTTSCC--SHHHHHTHHHHHHHBCCC-C-CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT
T ss_pred ------------CEEEecCcccc--ChHHHHHHHHHHHhcccc-C-CCCCceEEEEECcccCCHHHHHHHHHHHhccCCC
Confidence 01222222211 122355555555432211 0 1334799999999999999999999999999889
Q ss_pred eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~ 240 (365)
+.+|++|+...++.++++|||..+.|++++.+++.+++..++.++|+.+++++++.+++.++||+|.+++.++.++....
T Consensus 138 ~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~ 217 (323)
T 1sxj_B 138 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG 217 (323)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred ceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875433
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHh--CCHHHHHHHHH
Q 017844 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYE-LLLNCVPPVVVLKRLLYELLKR--LDAEIKHEVCH 315 (365)
Q Consensus 241 ~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~-l~~~~~~~~~il~~l~~~l~~~--~~~~~~~~~~~ 315 (365)
.++.+. .+........++++++. ++..++...+.. ++..|.++..++..+..++.+. ++.....++.+
T Consensus 218 ~i~~~~v~~~~~~~~~~~i~~~~~~-------~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~ 290 (323)
T 1sxj_B 218 LVNADNVFKIVDSPHPLIVKKMLLA-------SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIK 290 (323)
T ss_dssp SBCHHHHHHHHTSCCHHHHHHHHSC-------SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCCHHHHHHHHhc-------CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 333221 01111122333433332 345667677777 7778999999988887766542 56766667766
Q ss_pred HHHHhhhhh
Q 017844 316 WAAYYVSIS 324 (365)
Q Consensus 316 ~~~~~~~~~ 324 (365)
.+...+.++
T Consensus 291 ~l~~~~~~l 299 (323)
T 1sxj_B 291 EIGLTHMRI 299 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665553
No 9
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=100.00 E-value=3.1e-32 Score=258.97 Aligned_cols=321 Identities=17% Similarity=0.195 Sum_probs=222.9
Q ss_pred CcccccCCCCCCccccCHHHH---HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844 2 LWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~ 78 (365)
+|+++|||++|++++||++++ +.+...+..++.++++|+|||||||||+|+++++.+.++ +
T Consensus 15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-----------f----- 78 (447)
T 3pvs_A 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-----------V----- 78 (447)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-----------E-----
T ss_pred ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-----------e-----
Confidence 799999999999999999999 899999999998889999999999999999999965221 1
Q ss_pred CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~ 158 (365)
+.+++...+ ...+++.+........ .+++.++||||+|.++...++.|++.+++
T Consensus 79 ----------------~~l~a~~~~---~~~ir~~~~~a~~~~~-----~~~~~iLfIDEI~~l~~~~q~~LL~~le~-- 132 (447)
T 3pvs_A 79 ----------------ERISAVTSG---VKEIREAIERARQNRN-----AGRRTILFVDEVHRFNKSQQDAFLPHIED-- 132 (447)
T ss_dssp ----------------EEEETTTCC---HHHHHHHHHHHHHHHH-----TTCCEEEEEETTTCC------CCHHHHHT--
T ss_pred ----------------EEEEeccCC---HHHHHHHHHHHHHhhh-----cCCCcEEEEeChhhhCHHHHHHHHHHHhc--
Confidence 111111111 1124444444332211 24568999999999999999999999997
Q ss_pred CceeEEEEecCCC--cccHHHhccceeEEecCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHcCCCHHHHH
Q 017844 159 ASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK-------EGLQLPSGFATRLAEKSNRSLRRAI 229 (365)
Q Consensus 159 ~~~~~Il~t~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~-------~~~~i~~~~~~~i~~~~~g~lr~ai 229 (365)
..+.+|++|+... .+.+++.|||.++.|.+++.+++..++.+.+.+ .++.+++++++.+++.++||+|.++
T Consensus 133 ~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 3577888776543 688999999999999999999999999999886 5677999999999999999999999
Q ss_pred HHHHHHHhcCC-------CCCCCC---CCCC-----CCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHH
Q 017844 230 LSFETCRVQQY-------PFKDNQ---AIPA-----MDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVL 294 (365)
Q Consensus 230 ~~l~~~~~~~~-------~~~~~~---~~~~-----~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il 294 (365)
+.|+.++..+. .++.+. .+.. ....+..++++.++.+.....+...+..++..++..|.+|..|.
T Consensus 213 n~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~ 292 (447)
T 3pvs_A 213 NTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVA 292 (447)
T ss_dssp HHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999887654 122211 0000 00112344555555543333556778888899999999999999
Q ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHhh----hhhHHHHhhhcccCCCCCccccccccc-cccchh-cccCCCcccC
Q 017844 295 KRLLYELLKRLD---AEIKHEVCHWAAYYV----SISFQILFIVPLVDFPSPLECSAQAAY-IQPPLI-RANSDPVALH 364 (365)
Q Consensus 295 ~~l~~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 364 (365)
+.+...-.+.+. +.........+..++ .+-.-.|.+..++-..+||.|++-.+| --+..+ .-.+.||++|
T Consensus 293 rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~~~~~~~~~~vp~~ 371 (447)
T 3pvs_A 293 RRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVH 371 (447)
T ss_dssp HHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHSCCCCCCGG
T ss_pred HHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhcCCCCCChH
Confidence 999998887543 332222222222222 222334455433334799999998888 233333 3457788888
No 10
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.97 E-value=1.7e-29 Score=232.65 Aligned_cols=298 Identities=18% Similarity=0.167 Sum_probs=201.3
Q ss_pred cCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc---cc
Q 017844 17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS---SA 92 (365)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~ 92 (365)
-++++++.+...++.++.+| ++|+||+|+|||++++.+++.+.|..... ..||+.|..| ..+. ..
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---------~~~c~~c~~c--~~~~~~~~~ 74 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---------HKSCGHCRGC--QLMQAGTHP 74 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---------TBCCSCSHHH--HHHHHTCCT
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---------CCCCCCCHHH--HHHhcCCCC
Confidence 36888999999999999999 99999999999999999999998765321 2355555444 3222 23
Q ss_pred cceecCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 93 NHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 93 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
+...+.+.+. .......++++++.+.. .+ ..++++|+||||+|.|+.+++++|+++||+++.++.||++|++++
T Consensus 75 d~~~~~~~~~~~~~~i~~ir~l~~~~~~-~~----~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 75 DYYTLAPEKGKNTLGVDAVREVTEKLNE-HA----RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp TEEEECCCTTCSSBCHHHHHHHHHHTTS-CC----TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CEEEEeccccCCCCCHHHHHHHHHHHhh-cc----ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 3344444311 11222345565554332 22 246789999999999999999999999999999999999999999
Q ss_pred cccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 017844 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAM 251 (365)
Q Consensus 172 ~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~~~~~~ 251 (365)
+++++++|||+.++|++++.+++.++|..++ .+++++++.+++.++||+|+|+++++.....
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~------------- 211 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQ------------- 211 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHH-------------
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHH-------------
Confidence 9999999999999999999999999998764 6789999999999999999999999865421
Q ss_pred CHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHhh
Q 017844 252 DWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL----------DAEIKHEVCHWAAYYV 321 (365)
Q Consensus 252 ~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~----------~~~~~~~~~~~~~~~~ 321 (365)
....+.+.+..+........ +.+.+. +.++..++.++..++.+-+ ..+....+...+..++
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~~~~~~~~a~~~~ 282 (334)
T 1a5t_A 212 -ARETLCQALAYSVPSGDWYS-------LLAALN-HEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLS 282 (334)
T ss_dssp -HHHHHHHHHHHHHHHCCCGG-------GHHHHC-STTHHHHHHHHHHHHHHHTCC------CCCTTCHHHHHHHHHHSC
T ss_pred -HHHHHHHHHHHHHhChHHHH-------HHHHHh-cccHHHHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhCC
Confidence 11233444444433211111 111222 3467777777766655421 1222344455555565
Q ss_pred hhhHHHHhhhcccCCCCCcc--ccccccc-cccchhcccC
Q 017844 322 SISFQILFIVPLVDFPSPLE--CSAQAAY-IQPPLIRANS 358 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~ 358 (365)
..-...++. .+.+....++ ....+.. ++..+++++.
T Consensus 283 ~~~l~~~~~-~l~~~~~~l~~~~~~n~~l~le~ll~~l~~ 321 (334)
T 1a5t_A 283 PSRLQAILG-DVCHIREQLMSVTGINRELLITDLLLRIEH 321 (334)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 442222222 1333333444 4455555 8888887764
No 11
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.96 E-value=5.2e-28 Score=209.42 Aligned_cols=207 Identities=41% Similarity=0.680 Sum_probs=169.6
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
++|.++|+|.+|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+.+.....
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~--------------- 69 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD--------------- 69 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGG---------------
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcccccc---------------
Confidence 47999999999999999999999999999988777799999999999999999999764322110
Q ss_pred ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
..+.+.+.... ....+.+.+..+...... ...++.+++|||++.++...++.|++.+++.+.+
T Consensus 70 ------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~ 132 (226)
T 2chg_A 70 ------------NFIEMNASDER--GIDVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKS 132 (226)
T ss_dssp ------------GEEEEETTCTT--CHHHHHHHHHHHHTSCCS---TTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred ------------ceEEecccccc--ChHHHHHHHHHHhcccCC---CccCceEEEEeChhhcCHHHHHHHHHHHHhcCCC
Confidence 00111211111 111233444444433221 2356789999999999999999999999998888
Q ss_pred eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
+.+|++++....+.+++.+||..+.|++++.+++.+++...+.+.+..+++++++.+++.++||+|.+++.++.++..+
T Consensus 133 ~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211 (226)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 9999999999899999999999999999999999999999999999999999999999999999999999999988765
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.96 E-value=2.7e-27 Score=207.62 Aligned_cols=220 Identities=21% Similarity=0.309 Sum_probs=168.5
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~ 80 (365)
+|.++|+|.+|++++|++..++.+..++..++.++ ++|+||+|+||||+++.+++.+.+..... ..++..
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~---------~~~~~~ 82 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGV 82 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSC---------SSCCSC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCcc
Confidence 69999999999999999999999999999888766 99999999999999999999876543110 111121
Q ss_pred ceeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 81 NIDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
+..+ ...... ..+.+..... .....+++.+..+.. .+..+++.+++|||++.++...++.|++.+++.
T Consensus 83 ~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~ 153 (250)
T 1njg_A 83 CDNC--REIEQGRFVDLIEIDAASR--TKVEDTRDLLDNVQY-----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 153 (250)
T ss_dssp SHHH--HHHHTTCCSSEEEEETTCG--GGHHHHHHHHHSCCC-----SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC
T ss_pred cHHH--HHHhccCCcceEEecCccc--ccHHHHHHHHHHhhh-----chhcCCceEEEEECcccccHHHHHHHHHHHhcC
Confidence 1111 111111 1122221111 111122222222111 112445689999999999999999999999988
Q ss_pred cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~ 237 (365)
+.++.+|++++....+.+++.+||..+.|++++.+++.+++..++.+++..+++++++.+++.++|++|.+.++++.+..
T Consensus 154 ~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~ 233 (250)
T 1njg_A 154 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 233 (250)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 88899999999988999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred cC
Q 017844 238 QQ 239 (365)
Q Consensus 238 ~~ 239 (365)
.+
T Consensus 234 ~~ 235 (250)
T 1njg_A 234 SG 235 (250)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 13
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.95 E-value=3e-27 Score=213.84 Aligned_cols=238 Identities=13% Similarity=0.142 Sum_probs=174.5
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc-CCCCccceeccccceecCCCcceeccccccccccce
Q 017844 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (365)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (365)
||+++++.|+..++.++.|+++|+||+|+|||++++++++... +.. ...++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~---------------------------~~~d~~ 53 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP---------------------------KASDVL 53 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC---------------------------CTTTEE
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc---------------------------cCCCEE
Confidence 7889999999999999855599999999999999999998521 100 112223
Q ss_pred ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccH
Q 017844 96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175 (365)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~ 175 (365)
.+.+++. ......++++++.+. ..+. .++++|+||||+|.|+.+++++|+++||+|++++.||++|+++.++++
T Consensus 54 ~l~~~~~-~~~id~ir~li~~~~-~~p~----~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 54 EIDPEGE-NIGIDDIRTIKDFLN-YSPE----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp EECCSSS-CBCHHHHHHHHHHHT-SCCS----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred EEcCCcC-CCCHHHHHHHHHHHh-hccc----cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChH
Confidence 4444321 122234677666554 3332 457899999999999999999999999999999999999999999999
Q ss_pred HHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH-----------HhcCCCCCC
Q 017844 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC-----------RVQQYPFKD 244 (365)
Q Consensus 176 ~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~-----------~~~~~~~~~ 244 (365)
+++|| +++|++++.+++.++|.+++ + ++++++ +.+.||+|+|+++++.. ..++. ...
T Consensus 128 tI~SR--~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~-~~~ 195 (305)
T 2gno_A 128 TIKSR--VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLET-EKL 195 (305)
T ss_dssp HHHTT--SEEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHH
T ss_pred HHHce--eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccc-HHH
Confidence 99999 99999999999999999887 3 567665 45799999999888632 12210 000
Q ss_pred CCCCCCCCHHH--HHHHHHHHHHhccChhHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHH
Q 017844 245 NQAIPAMDWEE--FVFEIASDIMQEQSPKRLFQVRGKLYELLL--NCVPPVVVLKRLLYELLK 303 (365)
Q Consensus 245 ~~~~~~~~~~~--~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~--~~~~~~~il~~l~~~l~~ 303 (365)
-..+.....+. .++++++++..++. .++.+.+++++. .|.+|..++..+++.+..
T Consensus 196 v~~~~~~~~~~~~~v~~l~~ai~~~~~----~~a~~~~~~l~~~~~g~~~~~~i~~~~r~l~~ 254 (305)
T 2gno_A 196 LKKVLSKGLEGYLACRELLERFSKVES----KEFFALFDQVTNTITGKDAFLLIQRLTRIILH 254 (305)
T ss_dssp TTTTTCSHHHHHHHHHHHHHHHHHSCG----GGHHHHHHHHHHHSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCcchHHHHHHHHHHHCCCH----HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Confidence 11223333433 78999999998644 455666777877 898998888888888874
No 14
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.95 E-value=1.2e-27 Score=232.59 Aligned_cols=231 Identities=23% Similarity=0.347 Sum_probs=164.3
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHc-----------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~ 63 (365)
.+|++||||++|++++|++.+++.+..++.. +..++++|+||||+|||++|+++++++..
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~--- 103 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--- 103 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC---
Confidence 4799999999999999999999999999865 12345999999999999999999997621
Q ss_pred ccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCC---------CCCCCCCceEE
Q 017844 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI---------DTKGKRGFKVL 134 (365)
Q Consensus 64 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~vl 134 (365)
..+.+++. +.... ..+.+.+........+ ......++.|+
T Consensus 104 ~~i~in~s-----------------------------~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (516)
T 1sxj_A 104 DILEQNAS-----------------------------DVRSK--TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI 152 (516)
T ss_dssp EEEEECTT-----------------------------SCCCH--HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEE
T ss_pred CEEEEeCC-----------------------------CcchH--HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEE
Confidence 11222221 11000 0011111100000000 00113466899
Q ss_pred EEeCCCCCCHHHH---HHHHHHHhhhcCceeEEEEecCCC-cccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCC
Q 017844 135 VLNEVDKLSREAQ---HSLRRTMEKYSASCRLILCCNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (365)
Q Consensus 135 iiDE~~~L~~~~~---~~Ll~~le~~~~~~~~Il~t~~~~-~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~ 210 (365)
||||+|.+....+ +.|++++++. +..+|++++... ...+++++||..+.|++|+.+++.+++..++.++++.++
T Consensus 153 iIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~ 230 (516)
T 1sxj_A 153 IMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD 230 (516)
T ss_dssp EECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred EEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 9999999976433 7788888764 456888887654 445679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCC--CC---CCCHHHHHHHHHHHHHhc
Q 017844 211 SGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQA--IP---AMDWEEFVFEIASDIMQE 267 (365)
Q Consensus 211 ~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~~--~~---~~~~~~~i~~~~~~i~~~ 267 (365)
+++++.|++.++||+|.+++.|+.++.....++.+.. +. ..+....++++++.++..
T Consensus 231 ~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~ 292 (516)
T 1sxj_A 231 PNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDG 292 (516)
T ss_dssp TTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBG
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcC
Confidence 9999999999999999999999998876665554431 00 012223567777777764
No 15
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.93 E-value=2.1e-26 Score=213.02 Aligned_cols=293 Identities=14% Similarity=0.070 Sum_probs=208.5
Q ss_pred HHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcC
Q 017844 25 LKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103 (365)
Q Consensus 25 l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (365)
+...++ ++.+| ++|+||+|+||++.++.+++.+.+.+... + . .+.+.. +
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~-------~---------~----------~~~~~~-~-- 58 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE-------H---------H----------TFSIDP-N-- 58 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCE-------E---------E----------EEECCT-T--
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCe-------e---------E----------EEEecC-C--
Confidence 444555 45666 99999999999999999999775432100 0 0 011111 1
Q ss_pred ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCC-CCHHHHHHHHHHHhhhcCceeEEEEecCC------CcccHH
Q 017844 104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSS------SKVTEA 176 (365)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~-L~~~~~~~Ll~~le~~~~~~~~Il~t~~~------~~l~~~ 176 (365)
..+++++..+.. .++ .++++|++|||++. ++.+++++|+++++++++++.+|++++.. .++.++
T Consensus 59 ----~~~~~l~~~~~~-~pl----f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~ 129 (343)
T 1jr3_D 59 ----TDWNAIFSLCQA-MSL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTA 129 (343)
T ss_dssp ----CCHHHHHHHHHH-HHH----CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHH
T ss_pred ----CCHHHHHHHhcC-cCC----ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHH
Confidence 124555555433 332 45679999999999 99999999999999999999999999874 358899
Q ss_pred HhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCCC--CCCCCC
Q 017844 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY--PFKDNQ--AIPAMD 252 (365)
Q Consensus 177 l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~--~~~~~~--~~~~~~ 252 (365)
+.|||.++.|.+++.+++..++++++.++|+.+++++++.+++.++||+|.+.+.|++++.+.+ .++.++ .+....
T Consensus 130 i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 130 LANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred HHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999988642 222221 000011
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----hC-----CH-----------HHHHH
Q 017844 253 WEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----RL-----DA-----------EIKHE 312 (365)
Q Consensus 253 ~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~~-----~~-----------~~~~~ 312 (365)
.+..++++++++..+ +..++...+..++..|.+|..++..+..++.. .. +. .....
T Consensus 210 ~~~~if~l~~ai~~~----d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~ 285 (343)
T 1jr3_D 210 AHFTPFHWVDALLMG----KSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGM 285 (343)
T ss_dssp CCCCHHHHHHHHTTS----CHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHH
T ss_pred hcCCHHHHHHHHHCC----CHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHH
Confidence 123577888888874 34556666777778899999999988887765 11 11 11234
Q ss_pred HHHHHHHhhhh-hHHHHhhhcccCCCCCcccc--ccccc-cccchhcccCCCcc
Q 017844 313 VCHWAAYYVSI-SFQILFIVPLVDFPSPLECS--AQAAY-IQPPLIRANSDPVA 362 (365)
Q Consensus 313 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~ 362 (365)
+.+.+..|+.. +.+.+-. +.+.....|++ .++.+ +|..+++++..+.+
T Consensus 286 ~~~~~~~~s~~~L~~~l~~--l~~~d~~lK~~~~~~~~~~le~l~l~l~~~~~~ 337 (343)
T 1jr3_D 286 MGEALNRLSQTQLRQAVQL--LTRTELTLKQDYGQSVWAELEGLSLLLCHKPLA 337 (343)
T ss_dssp HHHHHHHSCHHHHHHHHHH--HHHHHHHHHHSSCSCHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHcCCHHHHHHHHHH--HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCC
Confidence 45556667655 3333322 44444456664 34545 99999999876544
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.92 E-value=1.1e-23 Score=194.31 Aligned_cols=191 Identities=20% Similarity=0.290 Sum_probs=148.3
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHc-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
.|.+||+|.+|++++|++.+++.+..++.. ...++++|+||+|||||++|+++++.+.++ .+.+++.
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~---~~~~~~~----- 89 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN---IKTTAAP----- 89 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC---EEEEEGG-----
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEecch-----
Confidence 599999999999999999999998888864 333459999999999999999999875322 1111110
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~ 156 (365)
... ....+... +.. ..+..+++|||++.+....++.|++.+++
T Consensus 90 ------------------------~~~--~~~~~~~~---~~~--------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~ 132 (338)
T 3pfi_A 90 ------------------------MIE--KSGDLAAI---LTN--------LSEGDILFIDEIHRLSPAIEEVLYPAMED 132 (338)
T ss_dssp ------------------------GCC--SHHHHHHH---HHT--------CCTTCEEEEETGGGCCHHHHHHHHHHHHT
T ss_pred ------------------------hcc--chhHHHHH---HHh--------ccCCCEEEEechhhcCHHHHHHHHHHHHh
Confidence 000 11112222 211 23457999999999999999999999987
Q ss_pred hcC------------------ceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844 157 YSA------------------SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (365)
Q Consensus 157 ~~~------------------~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i 217 (365)
... .+.+|++||....+.+++++|| ..+.|++|+.+++..++...+...++.+++++++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l 212 (338)
T 3pfi_A 133 YRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEI 212 (338)
T ss_dssp SCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred ccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 431 2678889999888999999999 799999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHh
Q 017844 218 AEKSNRSLRRAILSFETCRV 237 (365)
Q Consensus 218 ~~~~~g~lr~ai~~l~~~~~ 237 (365)
++.+.|++|.+.+.++.+..
T Consensus 213 ~~~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 213 AKRSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp HHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999998643
No 17
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.91 E-value=1.4e-23 Score=195.97 Aligned_cols=234 Identities=18% Similarity=0.212 Sum_probs=153.2
Q ss_pred CcccccCCCC-CCccccCHHHHHH---HHHHHHcCCCC--eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee
Q 017844 2 LWVDKYRPKT-LDQVIVHQDIAQN---LKKLVTEQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (365)
Q Consensus 2 ~w~~k~rP~~-~~~iig~~~~~~~---l~~~l~~~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~ 75 (365)
.+.++++|.. |++++|++.+++. +...+..+..+ +++|+||||+|||++|+++++.+.+.. ..+.+++..+ .
T Consensus 32 ~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~-~~~~~~~~~~-~ 109 (368)
T 3uk6_A 32 GLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDT-PFTAIAGSEI-F 109 (368)
T ss_dssp CBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSC-CEEEEEGGGG-S
T ss_pred CcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccC-Ccccccchhh-h
Confidence 4568899998 9999999988765 55566666664 599999999999999999999885432 1122222111 0
Q ss_pred cCCCcceecccccc--------------------------ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCC
Q 017844 76 DAGSRNIDLELTTL--------------------------SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKR 129 (365)
Q Consensus 76 ~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 129 (365)
.......+.....+ .......+.....+. ....+++.+...............
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~g~~~~ 188 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGE-IKSEVREQINAKVAEWREEGKAEI 188 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC---
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccc-cHHHHHHHHHHHHHHhhhhccccc
Confidence 00000000000000 000000000000000 011233333332221100000011
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEec------------CCCcccHHHhccceeEEecCCCHHHHHHH
Q 017844 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN------------SSSKVTEAIRSRCLNIRINSPTEEQIVKV 197 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~------------~~~~l~~~l~sR~~~i~~~~~~~~~~~~i 197 (365)
.+.|+||||+|.++.+.++.|++.++++...+ ++++++ .+..++++++|||..+.|++|+.+++.++
T Consensus 189 ~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 267 (368)
T 3uk6_A 189 IPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQI 267 (368)
T ss_dssp CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHH
T ss_pred cCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHH
Confidence 24699999999999999999999999876554 444444 24568899999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHhcC
Q 017844 198 LEFIAKKEGLQLPSGFATRLAEKSN-RSLRRAILSFETCRVQQ 239 (365)
Q Consensus 198 L~~~~~~~~~~i~~~~~~~i~~~~~-g~lr~ai~~l~~~~~~~ 239 (365)
++.++..+++.+++++++.+++.+. ||+|.++++++.++..+
T Consensus 268 l~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A 310 (368)
T 3uk6_A 268 LRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVC 310 (368)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 99999999999876553
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.90 E-value=1.2e-22 Score=186.21 Aligned_cols=194 Identities=23% Similarity=0.298 Sum_probs=150.5
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHc----C-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
+|.+||+|.+|++++|++.+++.+..++.. + ...+++|+||+|+|||++|+++++.+.++. +.++
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~------- 70 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS------- 70 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-------
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-------
Confidence 478999999999999999999888887753 2 334599999999999999999999763211 1111
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~ 156 (365)
+.... . ..++...+.. . ..+..+++|||++.++...++.|++.+++
T Consensus 71 ----------------------~~~~~--~---~~~l~~~l~~--~-----~~~~~~l~lDEi~~l~~~~~~~L~~~l~~ 116 (324)
T 1hqc_A 71 ----------------------GPAIE--K---PGDLAAILAN--S-----LEEGDILFIDEIHRLSRQAEEHLYPAMED 116 (324)
T ss_dssp ----------------------TTTCC--S---HHHHHHHHTT--T-----CCTTCEEEETTTTSCCHHHHHHHHHHHHH
T ss_pred ----------------------ccccC--C---hHHHHHHHHH--h-----ccCCCEEEEECCcccccchHHHHHHHHHh
Confidence 11110 0 1122222221 0 13457999999999999999999999987
Q ss_pred hc------------------CceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844 157 YS------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (365)
Q Consensus 157 ~~------------------~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i 217 (365)
.. .++.+|++|+....+.+++.+|| .++.|++|+.+++..++...+...+..+++++++.+
T Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l 196 (324)
T 1hqc_A 117 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEI 196 (324)
T ss_dssp SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 53 24679999999989999999999 599999999999999999999988999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhcC
Q 017844 218 AEKSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 218 ~~~~~g~lr~ai~~l~~~~~~~ 239 (365)
++.++|++|.+.++++.+...+
T Consensus 197 ~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 197 GRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp HHHSCSCHHHHHHHHHHHTTTS
T ss_pred HHHccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999886554
No 19
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=1.7e-22 Score=193.59 Aligned_cols=106 Identities=21% Similarity=0.303 Sum_probs=97.9
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEe---------cC----CCcccHHHhccceeEEecCCCHHHHHHHH
Q 017844 132 KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC---------NS----SSKVTEAIRSRCLNIRINSPTEEQIVKVL 198 (365)
Q Consensus 132 ~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t---------~~----~~~l~~~l~sR~~~i~~~~~~~~~~~~iL 198 (365)
+|++|||+|.|+.+++++|+++||+++.+ .||+++ ++ +..++++++|||..+.|++++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999999888 577788 54 66899999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 017844 199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ 238 (365)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~ 238 (365)
+.++..+++.++++++..+++.+ .|++|.|+++++.+...
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~ 416 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLL 416 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999987443
No 20
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.90 E-value=3e-23 Score=197.48 Aligned_cols=275 Identities=14% Similarity=0.218 Sum_probs=144.1
Q ss_pred cCCC-CCCccc-c--CHHHHHHHHHHHHcCC-CCeEEEECCCCCcHHHHHHHHHHHhcCC--CCccceeccccceecCCC
Q 017844 7 YRPK-TLDQVI-V--HQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 7 ~rP~-~~~~ii-g--~~~~~~~l~~~l~~~~-~~~lll~Gp~G~GKTtla~~la~~l~~~--~~~~i~~~~~~~~~~~~~ 79 (365)
..|. +|++++ | +..+...+........ .++++|+||+|+||||+++++++.+... ....+++++..+
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~------ 171 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF------ 171 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH------
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH------
Confidence 4454 899988 5 4555666676666543 4459999999999999999999977432 111122211111
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCC--CCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHh
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP--IDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTME 155 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le 155 (365)
..++...+..... +......++.+++|||++.+.. ..++.|+.+++
T Consensus 172 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~ 221 (440)
T 2z4s_A 172 ------------------------------LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFN 221 (440)
T ss_dssp ------------------------------HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 0011111110000 0000011457999999999875 78888999998
Q ss_pred hhc-CceeEEEEecCCCc----ccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Q 017844 156 KYS-ASCRLILCCNSSSK----VTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR 227 (365)
Q Consensus 156 ~~~-~~~~~Il~t~~~~~----l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ 227 (365)
... .+..+|++|+.+.. +.++++||| ..+.+++|+.+++.+++.+.+...++.+++++++.|+..++||+|.
T Consensus 222 ~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~ 301 (440)
T 2z4s_A 222 ELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRR 301 (440)
T ss_dssp HHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHH
T ss_pred HHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Confidence 754 34567777776543 789999999 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHH-----hccC-hhHHHHHHHHHHHHHHcCCC------hHHHHH
Q 017844 228 AILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIM-----QEQS-PKRLFQVRGKLYELLLNCVP------PVVVLK 295 (365)
Q Consensus 228 ai~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~-----~~~~-~~~~~~~~~~l~~l~~~~~~------~~~il~ 295 (365)
+.+.|+.+...+... ...++..+ +.+.+..+. +..+ .+.+.+..+.+|++....+. .....+
T Consensus 302 l~~~L~~~~~~a~~~--~~~It~~~----~~~~l~~~~~~~~~~~i~~~~~i~~~v~~~y~i~~~~~~s~~r~~~~~~~r 375 (440)
T 2z4s_A 302 LRGAIIKLLVYKETT--GKEVDLKE----AILLLKDFIKPNRVKAMDPIDELIEIVAKVTGVPREEILSNSRNVKALTAR 375 (440)
T ss_dssp HHHHHHHHHHHHHHS--SSCCCHHH----HHHHTSTTTCC----------------------------------------
T ss_pred HHHHHHHHHHHHHHh--CCCCCHHH----HHHHHHHHhhccccccCChHHHHHHHHHHHhCCCHHHhcCccCCcccchHH
Confidence 999999877654311 11122222 222222211 1122 34455556677776533221 112367
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhh
Q 017844 296 RLLYELLKRLDAEIKHEVCHWAAYYVSIS 324 (365)
Q Consensus 296 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (365)
++++++.+.++..+.++++..+ +.+|..
T Consensus 376 ~i~~yl~r~l~~~s~~~IG~~~-~rdhst 403 (440)
T 2z4s_A 376 RIGMYVAKNYLKSSLRTIAEKF-NRSHPV 403 (440)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHh-CCChhH
Confidence 8889999999999999999999 888873
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.89 E-value=2.7e-22 Score=175.64 Aligned_cols=194 Identities=16% Similarity=0.239 Sum_probs=148.8
Q ss_pred CcccccCC-CCCCcccc---CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 2 LWVDKYRP-KTLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 2 ~w~~k~rP-~~~~~iig---~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
+|..+++| .+|++++| ++.+++.+..++..+..++++|+||+|+||||+++.+++.+........++++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~---- 91 (242)
T 3bos_A 16 SLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH---- 91 (242)
T ss_dssp EEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG----
T ss_pred CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH----
Confidence 58899999 79999997 36888899988877666679999999999999999999987544322222222111
Q ss_pred CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHh
Q 017844 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA--QHSLRRTME 155 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~--~~~Ll~~le 155 (365)
.. ... +.+. ...++.+++|||++.+.... ++.|+..++
T Consensus 92 -----------------~~------~~~------~~~~-----------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~ 131 (242)
T 3bos_A 92 -----------------AS------IST------ALLE-----------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYN 131 (242)
T ss_dssp -----------------GG------SCG------GGGT-----------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHH
T ss_pred -----------------HH------HHH------HHHH-----------hccCCCEEEEeccccccCCHHHHHHHHHHHH
Confidence 00 000 0000 01235799999999887655 788888887
Q ss_pred hhcCce--eEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 017844 156 KYSASC--RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226 (365)
Q Consensus 156 ~~~~~~--~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr 226 (365)
...... .+|++++... ...+++.+|| ..+.|++|+.+++.+++...+...++.+++++++.+++.++||+|
T Consensus 132 ~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r 211 (242)
T 3bos_A 132 RVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLR 211 (242)
T ss_dssp HHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHH
Confidence 754332 4888887554 3568999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 017844 227 RAILSFETCRVQQ 239 (365)
Q Consensus 227 ~ai~~l~~~~~~~ 239 (365)
.+.+.++.++..+
T Consensus 212 ~l~~~l~~~~~~a 224 (242)
T 3bos_A 212 TLFDVLDRLDKAS 224 (242)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877654
No 22
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.89 E-value=1.3e-21 Score=180.02 Aligned_cols=191 Identities=20% Similarity=0.279 Sum_probs=146.2
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHcC-----CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~-----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~ 77 (365)
|+++++|++|++++|++.+++.+...+..+ ...+++|+||||+||||+++++++.+.++.. ...+..
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~sg~~----- 86 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTSGPV----- 86 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEETTT-----
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEechH-----
Confidence 599999999999999999999998888643 3345999999999999999999997733110 000000
Q ss_pred CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~ 157 (365)
......+..... . .....|++|||++.+.+..++.|+..++..
T Consensus 87 --------------------------~~~~~~l~~~~~---~--------~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~ 129 (334)
T 1in4_A 87 --------------------------LVKQGDMAAILT---S--------LERGDVLFIDEIHRLNKAVEELLYSAIEDF 129 (334)
T ss_dssp --------------------------CCSHHHHHHHHH---H--------CCTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred --------------------------hcCHHHHHHHHH---H--------ccCCCEEEEcchhhcCHHHHHHHHHHHHhc
Confidence 000111222111 1 123479999999999998888888877654
Q ss_pred c------------------CceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017844 158 S------------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (365)
Q Consensus 158 ~------------------~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~ 218 (365)
. ..+.++.+++.+..+.+++++||. .+.|.+++.+++.+++++.+...++.++++++..|+
T Consensus 130 ~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia 209 (334)
T 1in4_A 130 QIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIA 209 (334)
T ss_dssp CCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred ccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 2 124567778888889999999995 789999999999999999999899999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHhc
Q 017844 219 EKSNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 219 ~~~~g~lr~ai~~l~~~~~~ 238 (365)
+.+.|++|.|+++|+.+...
T Consensus 210 ~~~~G~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 210 KRSRGTPRIAIRLTKRVRDM 229 (334)
T ss_dssp HTSTTCHHHHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHH
Confidence 99999999999999876543
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.87 E-value=1.4e-20 Score=176.88 Aligned_cols=196 Identities=18% Similarity=0.247 Sum_probs=143.9
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~ 69 (365)
-|+++|+|.+|++++|++.+++.+..++.. ....++||+||+|||||++|+++++++.. ..+.++
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~---~~~~v~ 180 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA---TFFNIS 180 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEC
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC---cEEEee
Confidence 499999999999999999999999988731 12345999999999999999999987522 112222
Q ss_pred cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-------
Q 017844 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL------- 142 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L------- 142 (365)
+..+ .. .........++..+..... ..+.||+|||+|.|
T Consensus 181 ~~~l---------------------~~----~~~g~~~~~~~~~~~~a~~---------~~~~il~iDEid~l~~~~~~~ 226 (389)
T 3vfd_A 181 AASL---------------------TS----KYVGEGEKLVRALFAVARE---------LQPSIIFIDQVDSLLCERREG 226 (389)
T ss_dssp SCCC--------------------------------CHHHHHHHHHHHHH---------SSSEEEEEETGGGGC------
T ss_pred HHHh---------------------hc----cccchHHHHHHHHHHHHHh---------cCCeEEEEECchhhcccCCCc
Confidence 2111 00 0000111223344444332 23479999999987
Q ss_pred ----CHHHHHHHHHHHhhh----cCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 017844 143 ----SREAQHSLRRTMEKY----SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213 (365)
Q Consensus 143 ----~~~~~~~Ll~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~ 213 (365)
....++.|+..++.. ..++.+|.+||.+..+.+++++||. .+.|+.|+.+++..++..++...+..++++.
T Consensus 227 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~ 306 (389)
T 3vfd_A 227 EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKE 306 (389)
T ss_dssp --CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHH
T ss_pred cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 244566777777753 3457888899998899999999995 8999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 017844 214 ATRLAEKSNRSLRRAILSFET 234 (365)
Q Consensus 214 ~~~i~~~~~g~lr~ai~~l~~ 234 (365)
+..+++.+.|..+..+..|-.
T Consensus 307 ~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 307 LAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp HHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 999999999988877765543
No 24
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.87 E-value=2.5e-21 Score=177.57 Aligned_cols=260 Identities=15% Similarity=0.184 Sum_probs=171.8
Q ss_pred CCCCccc-c--CHHHHHHHHHHHHcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844 10 KTLDQVI-V--HQDIAQNLKKLVTEQD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (365)
Q Consensus 10 ~~~~~ii-g--~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (365)
.+|++++ | +..+...++.++.... .++++|+||||+||||+++++++.+.......+++++..+
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~----------- 76 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF----------- 76 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-----------
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH-----------
Confidence 4789987 4 5666777777776642 3459999999999999999999977433222222222111
Q ss_pred cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhh-cCce
Q 017844 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKY-SASC 161 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~-~~~~ 161 (365)
. ...... ........+.... .++.+++|||++.+.. ..++.++..++.. ..+.
T Consensus 77 -----~-~~~~~~-------~~~~~~~~~~~~~-----------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~ 132 (324)
T 1l8q_A 77 -----A-QAMVEH-------LKKGTINEFRNMY-----------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEK 132 (324)
T ss_dssp -----H-HHHHHH-------HHHTCHHHHHHHH-----------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTC
T ss_pred -----H-HHHHHH-------HHcCcHHHHHHHh-----------cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCC
Confidence 0 000000 0000011111111 1247999999999875 6788888888764 3345
Q ss_pred eEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844 162 RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (365)
Q Consensus 162 ~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~ 234 (365)
.+|++++.+. .+.+++.+|+ ..+.|++ +.+++.+++...+...++.+++++++.+++.+ ||+|.+.+.++.
T Consensus 133 ~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~ 210 (324)
T 1l8q_A 133 QIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKL 210 (324)
T ss_dssp EEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHH
T ss_pred eEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 6777777554 4789999999 7899999 99999999999999999999999999999999 999999999998
Q ss_pred HHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHH------HcCCChHHHHHHHHHHHHHhCCH
Q 017844 235 CRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQ-SPKRLFQVRGKLYELL------LNCVPPVVVLKRLLYELLKRLDA 307 (365)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~-~~~~~~~~~~~l~~l~------~~~~~~~~il~~l~~~l~~~~~~ 307 (365)
++..+. ..+. + .. .... +...+.++...+|++. ..+..+....+++++++.+.+..
T Consensus 211 ~~~~~~--------------~~l~-~-~~-~~~i~t~~~i~~~~~~~~~~~~~~i~s~~~~~~~~~~r~i~~~l~r~~~~ 273 (324)
T 1l8q_A 211 IKLKGF--------------EGLE-R-KE-RKERDKLMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCS 273 (324)
T ss_dssp HHHHCH--------------HHHH-H-HH-HHHHHHHHHHHHHHHHHHSCCHHHHSSCCCCSSSHHHHHHHHHHHHHHHC
T ss_pred HHHcCH--------------HHhc-c-cc-ccCCCCHHHHHHHHHHHhCCCHHHHhcCCCCCccchHHHHHHHHHHHHhC
Confidence 876611 0000 0 00 0001 1233444444444322 12344555688889998886666
Q ss_pred HHHHHHHHHHHHhhhh
Q 017844 308 EIKHEVCHWAAYYVSI 323 (365)
Q Consensus 308 ~~~~~~~~~~~~~~~~ 323 (365)
.+.++++...+..+|.
T Consensus 274 ~s~~~ig~~~g~~~~~ 289 (324)
T 1l8q_A 274 ASLIEIARAFKRKDHT 289 (324)
T ss_dssp CCHHHHHHHSSCCCST
T ss_pred CCHHHHHHHhCCCCch
Confidence 6778888888766776
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.86 E-value=3.8e-20 Score=167.49 Aligned_cols=197 Identities=17% Similarity=0.236 Sum_probs=144.1
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~ 69 (365)
.|+++++|.+|++++|++.+++.+..++.. ....+++|+||||||||++|+++++.+.++ .+.++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~---~~~i~ 86 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT---FLNIS 86 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE---EEEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEee
Confidence 488999999999999999999999988742 123349999999999999999999976321 11122
Q ss_pred cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC------
Q 017844 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------ 143 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------ 143 (365)
+..+ .. ...+ ......+..+..... ..+.+++|||++.+.
T Consensus 87 ~~~l---------------------~~---~~~~-~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~ 132 (297)
T 3b9p_A 87 AASL---------------------TS---KYVG-DGEKLVRALFAVARH---------MQPSIIFIDEVDSLLSERSSS 132 (297)
T ss_dssp STTT---------------------SS---SSCS-CHHHHHHHHHHHHHH---------TCSEEEEEETGGGTSBCC---
T ss_pred HHHH---------------------hh---cccc-hHHHHHHHHHHHHHH---------cCCcEEEeccHHHhccccccC
Confidence 1111 00 0001 111223333333322 234799999998773
Q ss_pred -----HHHHHHHHHHHhhhc-----CceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844 144 -----REAQHSLRRTMEKYS-----ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (365)
Q Consensus 144 -----~~~~~~Ll~~le~~~-----~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~ 212 (365)
...++.|+..++..+ .++.+|.+||.+..+++++++|| ..+.++.|+.++...++..++.+.+..++++
T Consensus 133 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~ 212 (297)
T 3b9p_A 133 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTE 212 (297)
T ss_dssp --CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHH
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHH
Confidence 345667888888754 34778888999889999999999 5899999999999999999998888889999
Q ss_pred HHHHHHHHcCCCHHHHH-HHHHHH
Q 017844 213 FATRLAEKSNRSLRRAI-LSFETC 235 (365)
Q Consensus 213 ~~~~i~~~~~g~lr~ai-~~l~~~ 235 (365)
.++.+++.+.|..+..+ ++++.+
T Consensus 213 ~~~~la~~~~g~~~~~l~~l~~~a 236 (297)
T 3b9p_A 213 ALRRLAKITDGYSGSDLTALAKDA 236 (297)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999887666 444444
No 26
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=7.5e-21 Score=173.09 Aligned_cols=187 Identities=21% Similarity=0.279 Sum_probs=138.9
Q ss_pred ccccCHHHHHHHHHHHH---------------cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC----ccceeccccce
Q 017844 14 QVIVHQDIAQNLKKLVT---------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA----EKVKVENKTWK 74 (365)
Q Consensus 14 ~iig~~~~~~~l~~~l~---------------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~----~~i~~~~~~~~ 74 (365)
+++|++.+++.+...+. .....+++|+||||||||++|+++++.+.+... ..+.+++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD-- 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH--
Confidence 68999999998887664 223335999999999999999999998754221 011111100
Q ss_pred ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC---------CHH
Q 017844 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SRE 145 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L---------~~~ 145 (365)
+...-.+ .......+.+... ...|++|||+|.+ +..
T Consensus 110 ----------------------l~~~~~g-~~~~~~~~~~~~~------------~~~vl~iDEid~l~~~~~~~~~~~~ 154 (309)
T 3syl_A 110 ----------------------LVGQYIG-HTAPKTKEVLKRA------------MGGVLFIDEAYYLYRPDNERDYGQE 154 (309)
T ss_dssp ----------------------TCCSSTT-CHHHHHHHHHHHH------------TTSEEEEETGGGSCCCC---CCTHH
T ss_pred ----------------------hhhhccc-ccHHHHHHHHHhc------------CCCEEEEEChhhhccCCCcccccHH
Confidence 0000011 1111222333221 1269999999977 788
Q ss_pred HHHHHHHHHhhhcCceeEEEEecCCC-----cccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017844 146 AQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219 (365)
Q Consensus 146 ~~~~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~ 219 (365)
.++.|++.+++.+.++.+|++++... .+.+++++|| ..+.|++|+.+++..+++.++.+.+..+++++++.+++
T Consensus 155 ~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~ 234 (309)
T 3syl_A 155 AIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRA 234 (309)
T ss_dssp HHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 89999999999888888888887543 2468999999 79999999999999999999999999999999999998
Q ss_pred H--------cCCCHHHHHHHHHHHHh
Q 017844 220 K--------SNRSLRRAILSFETCRV 237 (365)
Q Consensus 220 ~--------~~g~lr~ai~~l~~~~~ 237 (365)
. +.||+|.+.++++.++.
T Consensus 235 ~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 235 YIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 6 45999999999998765
No 27
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.86 E-value=2e-20 Score=171.22 Aligned_cols=197 Identities=18% Similarity=0.201 Sum_probs=143.3
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHH----------c-CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~----------~-~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~ 69 (365)
.|+.++.+.+|++++|++.+++.++.++. . +..+ +++|+||||||||++|+++++++..+ .+.++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~v~ 83 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS 83 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC---EEEEc
Confidence 37889999999999999999999998872 1 2222 39999999999999999999976321 11122
Q ss_pred cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----
Q 017844 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----- 144 (365)
+..+ .....+ .....++..+..... ..+.||+|||+|.+..
T Consensus 84 ~~~l------------------------~~~~~g-~~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~~~~~ 129 (322)
T 3eie_A 84 SSDL------------------------VSKWMG-ESEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEG 129 (322)
T ss_dssp HHHH------------------------HTTTGG-GHHHHHHHHHHHHHH---------TSSEEEEEECGGGGSCC----
T ss_pred hHHH------------------------hhcccc-hHHHHHHHHHHHHHh---------cCCeEEEechhhhhhccCCCC
Confidence 1111 000001 111224444444332 2347999999998753
Q ss_pred ------HHHHHHHHHHhhh---cCceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 017844 145 ------EAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (365)
Q Consensus 145 ------~~~~~Ll~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~ 214 (365)
..++.|+..++.. ..++.+|.+||.+..+++++++|| ..+.++.|+.++..++++.++.+.+..+++..+
T Consensus 130 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l 209 (322)
T 3eie_A 130 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDY 209 (322)
T ss_dssp --CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHH
T ss_pred cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHH
Confidence 3467788888753 346778888999999999999999 489999999999999999999888888899999
Q ss_pred HHHHHHcCC-CHHHHHHHHHHH
Q 017844 215 TRLAEKSNR-SLRRAILSFETC 235 (365)
Q Consensus 215 ~~i~~~~~g-~lr~ai~~l~~~ 235 (365)
+.+++.+.| +.++..++++.+
T Consensus 210 ~~la~~t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 210 RTLGAMTEGYSGSDIAVVVKDA 231 (322)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHH
Confidence 999999887 555555555443
No 28
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.85 E-value=3.9e-20 Score=171.39 Aligned_cols=198 Identities=18% Similarity=0.199 Sum_probs=137.6
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~ 69 (365)
.|..++++.+|++++|++.+++.|+.++.. ...+ +++|+||||||||++|+++++++..+ .+.++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~v~ 116 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS 116 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC---EEEee
Confidence 366788999999999999999999987731 2223 39999999999999999999987321 11122
Q ss_pred cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----
Q 017844 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----- 144 (365)
+..+ .. .-.+ .....++..+..... ..+.||||||+|.+..
T Consensus 117 ~~~l---------------------~~---~~~g-~~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~r~~~ 162 (355)
T 2qp9_X 117 SSDL---------------------VS---KWMG-ESEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEG 162 (355)
T ss_dssp HHHH---------------------HS---CC----CHHHHHHHHHHHHH---------TSSEEEEEECGGGGTC-----
T ss_pred HHHH---------------------hh---hhcc-hHHHHHHHHHHHHHH---------cCCeEEEEechHhhcccCCCC
Confidence 1111 00 0001 111234444443322 2347999999998863
Q ss_pred ------HHHHHHHHHHhhh---cCceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 017844 145 ------EAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (365)
Q Consensus 145 ------~~~~~Ll~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~ 214 (365)
..++.|+..|+.. ..++.+|.+||.++.+++++++|| ..+.++.|+.+++.++++.++...+..+++..+
T Consensus 163 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l 242 (355)
T 2qp9_X 163 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDY 242 (355)
T ss_dssp -CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHH
T ss_pred cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHH
Confidence 3467788888743 456788889999999999999999 589999999999999999999888777899999
Q ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Q 017844 215 TRLAEKSNR-SLRRAILSFETCR 236 (365)
Q Consensus 215 ~~i~~~~~g-~lr~ai~~l~~~~ 236 (365)
+.|++.+.| +.++..++++.++
T Consensus 243 ~~la~~t~G~sg~dl~~l~~~A~ 265 (355)
T 2qp9_X 243 RTLGAMTEGYSGSDIAVVVKDAL 265 (355)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999998 5555555555443
No 29
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.85 E-value=6e-20 Score=172.31 Aligned_cols=218 Identities=16% Similarity=0.190 Sum_probs=150.7
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHc----CCCC--eEEEECCCCCcHHHHHHHHHHHhcCC-CCccceeccccce
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCP--HLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWK 74 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~~~~--~lll~Gp~G~GKTtla~~la~~l~~~-~~~~i~~~~~~~~ 74 (365)
+|..+|+| ++++|++..++.+..++.. +... +++|+||+|+||||+++.+++.+.+. ....+++++...
T Consensus 9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~- 84 (389)
T 1fnn_A 9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY- 84 (389)
T ss_dssp GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC-
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC-
Confidence 47788888 7799999988888887764 3323 69999999999999999999987554 233344443221
Q ss_pred ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~l 154 (365)
.....+. ..+. ..+.......+. ....+.+.+...... .+++.|++|||++.++...++.|++.+
T Consensus 85 ----~~~~~~~-~~l~--~~l~~~~~~~~~-~~~~~~~~l~~~l~~-------~~~~~vlilDE~~~l~~~~~~~L~~~~ 149 (389)
T 1fnn_A 85 ----RNFTAII-GEIA--RSLNIPFPRRGL-SRDEFLALLVEHLRE-------RDLYMFLVLDDAFNLAPDILSTFIRLG 149 (389)
T ss_dssp ----CSHHHHH-HHHH--HHTTCCCCSSCC-CHHHHHHHHHHHHHH-------TTCCEEEEEETGGGSCHHHHHHHHHHT
T ss_pred ----CCHHHHH-HHHH--HHhCccCCCCCC-CHHHHHHHHHHHHhh-------cCCeEEEEEECccccchHHHHHHHHHH
Confidence 0000000 0000 000000000111 111122222222211 234689999999999999999999999
Q ss_pred hhhc----CceeEEEEecCC---CcccHHHhccce--eEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc--
Q 017844 155 EKYS----ASCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS-- 221 (365)
Q Consensus 155 e~~~----~~~~~Il~t~~~---~~l~~~l~sR~~--~i~~~~~~~~~~~~iL~~~~~~~--~~~i~~~~~~~i~~~~-- 221 (365)
++.+ .++.+|++++.. ..+.+.+.+||. .+.|++++.+++.+++...+... ...+++++++.+++.+
T Consensus 150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (389)
T 1fnn_A 150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA 229 (389)
T ss_dssp TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred HhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Confidence 8764 478899999887 567889999986 79999999999999999988752 3478999999999999
Q ss_pred -------CCCHHHHHHHHHHHHhc
Q 017844 222 -------NRSLRRAILSFETCRVQ 238 (365)
Q Consensus 222 -------~g~lr~ai~~l~~~~~~ 238 (365)
+||+|.++++++.++..
T Consensus 230 ~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 230 QTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp SSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCCcHHHHHHHHHHHHHH
Confidence 89999999999987654
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.2e-19 Score=163.02 Aligned_cols=197 Identities=17% Similarity=0.194 Sum_probs=140.3
Q ss_pred ccccCCCCCCccccCHHHHHHHHHHHHc-----------CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
+.++.+.+|++++|++.+++.|+..+.. ... .+++|+||||||||++|+++++++.+. ..+.+++.
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~~~ 80 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISSS 80 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEECC
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEEhH
Confidence 4566778999999999999999987731 122 239999999999999999999976211 11112211
Q ss_pred cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--------
Q 017844 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (365)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-------- 143 (365)
.+ .. ...+ .....++..+..... ..+.||+|||+|.+.
T Consensus 81 ~l---------------------~~---~~~g-~~~~~~~~lf~~a~~---------~~~~vl~iDEid~l~~~~~~~~~ 126 (322)
T 1xwi_A 81 DL---------------------VS---KWLG-ESEKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENES 126 (322)
T ss_dssp SS---------------------CC---SSCC-SCHHHHHHHHHHHHH---------TSSEEEEEETTTGGGCCSSSCCT
T ss_pred HH---------------------Hh---hhhh-HHHHHHHHHHHHHHh---------cCCcEEEeecHHHhccccccccc
Confidence 11 00 0011 122234455544432 234799999999872
Q ss_pred ---HHHHHHHHHHHhhh---cCceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017844 144 ---REAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216 (365)
Q Consensus 144 ---~~~~~~Ll~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~ 216 (365)
....+.|+..++.. ..++.+|.+||.+..+++++++|| ..+.++.|+.++..++++.++...+..+++..++.
T Consensus 127 ~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~ 206 (322)
T 1xwi_A 127 EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRE 206 (322)
T ss_dssp THHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 23456777777753 456788889999999999999999 58999999999999999999988887889999999
Q ss_pred HHHHcCCC-HHHHHHHHHHHH
Q 017844 217 LAEKSNRS-LRRAILSFETCR 236 (365)
Q Consensus 217 i~~~~~g~-lr~ai~~l~~~~ 236 (365)
|++.+.|- .++..++++.++
T Consensus 207 la~~t~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 207 LGRKTDGYSGADISIIVRDAL 227 (322)
T ss_dssp HHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHH
Confidence 99999884 444545555433
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.84 E-value=7.7e-20 Score=169.64 Aligned_cols=197 Identities=16% Similarity=0.202 Sum_probs=140.9
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
+.++++|.+|++++|++.+++.++.++.. ....+++|+||+|||||++|+++++.+.++ .+.+++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~i~~ 150 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT---FFSISA 150 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE---EEEEEG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe---EEEEeh
Confidence 56889999999999999999999988752 223349999999999999999999975221 122222
Q ss_pred ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-------
Q 017844 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------- 143 (365)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------- 143 (365)
..+ .. ...+ .....++..+..... ..+.||+|||+|.|.
T Consensus 151 ~~l---------------------~~---~~~g-~~~~~~~~~~~~a~~---------~~~~vl~iDEid~l~~~~~~~~ 196 (357)
T 3d8b_A 151 SSL---------------------TS---KWVG-EGEKMVRALFAVARC---------QQPAVIFIDEIDSLLSQRGDGE 196 (357)
T ss_dssp GGG---------------------CC---SSTT-HHHHHHHHHHHHHHH---------TCSEEEEEETHHHHTBC-----
T ss_pred HHh---------------------hc---cccc-hHHHHHHHHHHHHHh---------cCCeEEEEeCchhhhccCCCCc
Confidence 111 00 0001 111123333333222 235799999998763
Q ss_pred ----HHHHHHHHHHHhhh----cCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 017844 144 ----REAQHSLRRTMEKY----SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (365)
Q Consensus 144 ----~~~~~~Ll~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~ 214 (365)
...++.|+..++.. ..++.+|++||.+..+.+++++||. .+.++.|+.++..+++..++...+..++++.+
T Consensus 197 ~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l 276 (357)
T 3d8b_A 197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI 276 (357)
T ss_dssp -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHH
T ss_pred chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHH
Confidence 23456777777642 3467788889998899999999996 88999999999999999999888888999999
Q ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Q 017844 215 TRLAEKSNR-SLRRAILSFETCR 236 (365)
Q Consensus 215 ~~i~~~~~g-~lr~ai~~l~~~~ 236 (365)
+.+++.+.| +.+....+++.++
T Consensus 277 ~~la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 277 EQIVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999998 4444445555443
No 32
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.83 E-value=1.6e-19 Score=172.02 Aligned_cols=198 Identities=17% Similarity=0.190 Sum_probs=141.5
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHH----------c-CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~----------~-~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
+..++++.+|++++|++.+++.|+.++. . ... .+++|+||||||||++|+++++++.+ ...+.+++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~--~~~~~v~~ 201 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--STFFSISS 201 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS--SEEEEECC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC--CCEEEEeH
Confidence 5677889999999999999999998772 1 122 34999999999999999999997521 11122222
Q ss_pred ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-------
Q 017844 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------- 143 (365)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------- 143 (365)
..+ .... .+. ....++..+..... ..+.||+|||+|.+.
T Consensus 202 ~~l---------------------~~~~---~g~-~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~~~~~~ 247 (444)
T 2zan_A 202 SDL---------------------VSKW---LGE-SEKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENE 247 (444)
T ss_dssp C----------------------------------CCCTHHHHHHHHHH---------SCSEEEEESCTTTTCCCSSCCC
T ss_pred HHH---------------------Hhhh---cch-HHHHHHHHHHHHHH---------cCCeEEEEechHhhccCCCCcc
Confidence 111 0000 000 11124455544332 234799999999883
Q ss_pred ----HHHHHHHHHHHhhh---cCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017844 144 ----REAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (365)
Q Consensus 144 ----~~~~~~Ll~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~ 215 (365)
...++.|+..++.. ..++.||++||.+..+++++++||. .+.++.|+.++...+++.++...+..+++..+.
T Consensus 248 ~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~ 327 (444)
T 2zan_A 248 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQ 327 (444)
T ss_dssp CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 34566777777653 4568889999999999999999994 899999999999999999988877778999999
Q ss_pred HHHHHcCC-CHHHHHHHHHHHH
Q 017844 216 RLAEKSNR-SLRRAILSFETCR 236 (365)
Q Consensus 216 ~i~~~~~g-~lr~ai~~l~~~~ 236 (365)
.|++.+.| +.++..++++.++
T Consensus 328 ~la~~t~G~sgadl~~l~~~a~ 349 (444)
T 2zan_A 328 ELGRKTDGYSGADISIIVRDAL 349 (444)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHH
Confidence 99999998 5555555555443
No 33
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.83 E-value=1.2e-19 Score=160.67 Aligned_cols=200 Identities=18% Similarity=0.258 Sum_probs=139.0
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~ 69 (365)
+|.+++++.+|++++|++.+++.+...+.. ...+ +++|+||||+||||+++++++.+..+ .+.++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~i~ 77 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTIS 77 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEEC
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC---EEEEe
Confidence 699999999999999999999887766532 1233 49999999999999999999976322 12222
Q ss_pred cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----
Q 017844 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----- 144 (365)
+..+ ... ..+ .....++..+..... ..+.++++||+|.+..
T Consensus 78 ~~~~---------------------~~~---~~~-~~~~~~~~~~~~a~~---------~~~~il~iDeid~l~~~~~~~ 123 (257)
T 1lv7_A 78 GSDF---------------------VEM---FVG-VGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAG 123 (257)
T ss_dssp SCSS---------------------TTS---CCC-CCHHHHHHHHHHHHT---------TCSEEEEETTHHHHTCCCSTT
T ss_pred HHHH---------------------HHH---hhh-hhHHHHHHHHHHHHH---------cCCeeehhhhhhhhccCCCCC
Confidence 2211 000 001 111234444444321 2347999999976532
Q ss_pred ---------HHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCC
Q 017844 145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (365)
Q Consensus 145 ---------~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~ 210 (365)
...+.++..++.. ..++.+|.+||.++.+++++.+ |+ ..+.|+.|+.++..++++..+.+.++. +
T Consensus 124 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~ 202 (257)
T 1lv7_A 124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-P 202 (257)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-T
T ss_pred cCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-c
Confidence 3455677777643 3457788889999889999987 76 478999999999999998887654432 2
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Q 017844 211 SGFATRLAEKSNR-SLRRAILSFETCRVQQ 239 (365)
Q Consensus 211 ~~~~~~i~~~~~g-~lr~ai~~l~~~~~~~ 239 (365)
+..+..++..+.| +.|+..++++.++..+
T Consensus 203 ~~~~~~la~~~~G~~~~dl~~l~~~a~~~a 232 (257)
T 1lv7_A 203 DIDAAIIARGTPGFSGADLANLVNEAALFA 232 (257)
T ss_dssp TCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3336788999999 9999999988776553
No 34
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.83 E-value=4.4e-20 Score=172.99 Aligned_cols=217 Identities=20% Similarity=0.260 Sum_probs=144.6
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCC------CCccceecccc
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP------GAEKVKVENKT 72 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKTtla~~la~~l~~~------~~~~i~~~~~~ 72 (365)
|..+|.| ++++|++...+.+..++.. +..++++|+||+|+|||++++.+++.+... ....+++++..
T Consensus 12 l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 12 LLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp HSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred cCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 4556777 7889999999999988854 334459999999999999999999976432 22223333321
Q ss_pred ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH--HHHHH
Q 017844 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHSL 150 (365)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~--~~~~L 150 (365)
. .....+. ..+ ...+.......+. . ..+.+..+..... ..+++.+++|||++.+... .++.|
T Consensus 89 ~-----~~~~~~~-~~l--~~~l~~~~~~~~~-~---~~~~~~~l~~~l~----~~~~~~vlilDEi~~l~~~~~~~~~l 152 (387)
T 2v1u_A 89 R-----ETPYRVA-SAI--AEAVGVRVPFTGL-S---VGEVYERLVKRLS----RLRGIYIIVLDEIDFLPKRPGGQDLL 152 (387)
T ss_dssp S-----CSHHHHH-HHH--HHHHSCCCCSSCC-C---HHHHHHHHHHHHT----TSCSEEEEEEETTTHHHHSTTHHHHH
T ss_pred C-----CCHHHHH-HHH--HHHhCCCCCCCCC-C---HHHHHHHHHHHHh----ccCCeEEEEEccHhhhcccCCCChHH
Confidence 1 0000000 000 0000000000111 1 1122222211111 1234679999999998766 67777
Q ss_pred HHHHhhh-----cCceeEEEEecCC---CcccHHHhccc--eeEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHH
Q 017844 151 RRTMEKY-----SASCRLILCCNSS---SKVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLA 218 (365)
Q Consensus 151 l~~le~~-----~~~~~~Il~t~~~---~~l~~~l~sR~--~~i~~~~~~~~~~~~iL~~~~~~--~~~~i~~~~~~~i~ 218 (365)
..+++.. ..++.+|++++.. ..+.+++.+|+ ..+.|++++.+++.+++...+.. .+..+++++++.++
T Consensus 153 ~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~ 232 (387)
T 2v1u_A 153 YRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCA 232 (387)
T ss_dssp HHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHH
T ss_pred HhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 7777654 4567889999887 57889999999 68999999999999999999876 56778999999999
Q ss_pred HHcC---CCHHHHHHHHHHHHhc
Q 017844 219 EKSN---RSLRRAILSFETCRVQ 238 (365)
Q Consensus 219 ~~~~---g~lr~ai~~l~~~~~~ 238 (365)
+.+. ||+|.++++++.+...
T Consensus 233 ~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 233 ALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 9998 9999999999987654
No 35
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.82 E-value=1.9e-19 Score=168.74 Aligned_cols=219 Identities=15% Similarity=0.105 Sum_probs=142.3
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCC--------CCccceec
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP--------GAEKVKVE 69 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKTtla~~la~~l~~~--------~~~~i~~~ 69 (365)
+|..+|+| ++++|++..++.+..++.. +..++++|+||+|+|||++++.+++.+... ....++++
T Consensus 12 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 12 FIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp TTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 57788888 7899999988888766653 334459999999999999999999976332 22223333
Q ss_pred cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH-HH
Q 017844 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QH 148 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~-~~ 148 (365)
+.....++..-...+ . ...........+... .+.+..+..... ..+ .+++|||+|.+.... ++
T Consensus 89 ~~~~~~~~~~~~~~l----~--~~l~~~~~~~~~~~~----~~~~~~l~~~l~-----~~~-~vlilDEi~~l~~~~~~~ 152 (384)
T 2qby_B 89 CREVGGTPQAVLSSL----A--GKLTGFSVPKHGINL----GEYIDKIKNGTR-----NIR-AIIYLDEVDTLVKRRGGD 152 (384)
T ss_dssp HHHHCSCHHHHHHHH----H--HHHHCSCCCSSSSCT----HHHHHHHHHHHS-----SSC-EEEEEETTHHHHHSTTSH
T ss_pred CccCCCCHHHHHHHH----H--HHhcCCCCCCCCCCH----HHHHHHHHHHhc-----cCC-CEEEEECHHHhccCCCCc
Confidence 321100000000000 0 000000000111111 122222221111 112 399999999886542 45
Q ss_pred H-HHHHHhhhcCceeEEEEecCC---CcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHc
Q 017844 149 S-LRRTMEKYSASCRLILCCNSS---SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAEKS 221 (365)
Q Consensus 149 ~-Ll~~le~~~~~~~~Il~t~~~---~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~--~~~~i~~~~~~~i~~~~ 221 (365)
. +..+++.. .++.+|++++.. ..+.+++.+|+ ..+.|++++.+++.+++..++.. .+..+++++++.+++.+
T Consensus 153 ~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 231 (384)
T 2qby_B 153 IVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS 231 (384)
T ss_dssp HHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred eeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence 5 44555544 678899999987 57889999995 69999999999999999998875 45678999999999998
Q ss_pred C---CCHHHHHHHHHHHHhcCC
Q 017844 222 N---RSLRRAILSFETCRVQQY 240 (365)
Q Consensus 222 ~---g~lr~ai~~l~~~~~~~~ 240 (365)
. ||+|.++++++.+...+.
T Consensus 232 ~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 232 AKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHHHHHHHHHHHHhc
Confidence 8 999999999998876654
No 36
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1e-18 Score=161.31 Aligned_cols=194 Identities=20% Similarity=0.251 Sum_probs=131.7
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHHc-----------CC-CCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QD-CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~-~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
++-...+|+++.|.+++++.|++.+.- |- .|. +|||||||||||++|+++|+++..+- +.+++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~~s 216 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVSGA 216 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEEGG
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEEhH
Confidence 334446899999999999999987641 32 233 99999999999999999999873321 111111
Q ss_pred cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-------
Q 017844 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------- 144 (365)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------- 144 (365)
.+ + +.........+++++...... .+.|++|||+|.+..
T Consensus 217 ~l---------------------~----sk~vGese~~vr~lF~~Ar~~---------aP~IIFiDEiDai~~~R~~~~~ 262 (405)
T 4b4t_J 217 EL---------------------V----QKYIGEGSRMVRELFVMAREH---------APSIIFMDEIDSIGSTRVEGSG 262 (405)
T ss_dssp GG---------------------S----CSSTTHHHHHHHHHHHHHHHT---------CSEEEEEESSSCCTTSCSCSSS
T ss_pred Hh---------------------h----ccccchHHHHHHHHHHHHHHh---------CCceEeeecchhhccCCCCCCC
Confidence 11 1 011111223466666655443 347999999998732
Q ss_pred ----H---HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844 145 ----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (365)
Q Consensus 145 ----~---~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~ 212 (365)
. ..+.|+..|+.. ..++.+|.+||+++.+++++++ |+. .|+|+.|+.+++.++++.++.+.++. ++.
T Consensus 263 ~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dv 341 (405)
T 4b4t_J 263 GGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGI 341 (405)
T ss_dssp GGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSC
T ss_pred CCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccC
Confidence 1 344566666643 3467889999999999999998 774 89999999999999999887655432 222
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHHH
Q 017844 213 FATRLAEKSNR-SLRRAILSFETCR 236 (365)
Q Consensus 213 ~~~~i~~~~~g-~lr~ai~~l~~~~ 236 (365)
.++.+|+.+.| +..+.-+++..++
T Consensus 342 dl~~lA~~t~G~SGADi~~l~~eA~ 366 (405)
T 4b4t_J 342 NLRKVAEKMNGCSGADVKGVCTEAG 366 (405)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 47888988876 4444444454443
No 37
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.82 E-value=5.1e-20 Score=176.67 Aligned_cols=200 Identities=15% Similarity=0.243 Sum_probs=141.1
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
.|.++|||..|++++|++..++.+...+.....+|++|+||||||||++++++++.+.+...... +.+
T Consensus 169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~-l~~----------- 236 (468)
T 3pxg_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI-LRD----------- 236 (468)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT-TSS-----------
T ss_pred HHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh-hcC-----------
Confidence 48899999999999999999999999998877778999999999999999999998754321100 000
Q ss_pred eeccccccccccceecCCC-CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 82 IDLELTTLSSANHVELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
..++.+... .........++.++..+.. .++.|++|| ...++++.|+..|+. ..
T Consensus 237 ----------~~~~~l~~~~~~~g~~e~~~~~~~~~~~~---------~~~~iLfiD----~~~~a~~~L~~~L~~--g~ 291 (468)
T 3pxg_A 237 ----------KRVMTLDMGTKYRGEFEDRLKKVMDEIRQ---------AGNIILFID----AAIDASNILKPSLAR--GE 291 (468)
T ss_dssp ----------CCEECC----------CTTHHHHHHHHHT---------CCCCEEEEC----C--------CCCTTS--SS
T ss_pred ----------CeEEEeeCCccccchHHHHHHHHHHHHHh---------cCCeEEEEe----CchhHHHHHHHhhcC--CC
Confidence 011111111 0000001124455555443 234699999 455677778888774 36
Q ss_pred eeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------H
Q 017844 161 CRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS------L 225 (365)
Q Consensus 161 ~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~~~~g~------l 225 (365)
+.+|.+||..+ .+++++++||..+.|++|+.+++..+++.++.+ +++.++++++..++..+.+. +
T Consensus 292 v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp 371 (468)
T 3pxg_A 292 LQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP 371 (468)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred EEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCC
Confidence 78888888876 588999999999999999999999999988766 78899999999999976543 5
Q ss_pred HHHHHHHHHHHhc
Q 017844 226 RRAILSFETCRVQ 238 (365)
Q Consensus 226 r~ai~~l~~~~~~ 238 (365)
+.++.+++.++..
T Consensus 372 ~~ai~ll~~a~~~ 384 (468)
T 3pxg_A 372 DKAIDLIDEAGSK 384 (468)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 6799999876653
No 38
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5e-19 Score=159.71 Aligned_cols=206 Identities=8% Similarity=0.066 Sum_probs=131.6
Q ss_pred cccCHHHHH----HHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC-------CCccceeccccceecCCCccee
Q 017844 15 VIVHQDIAQ----NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-------GAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 15 iig~~~~~~----~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-------~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
+.|.++..+ .|...+..+..++++|+||||||||++++.+++++... ....++++|... .++..-...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~-~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL-AGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC-C--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc-CCHHHHHHH
Confidence 345544444 44455566777779999999999999999999988532 123345555432 111000000
Q ss_pred ccccccccccceecCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---cC
Q 017844 84 LELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---SA 159 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---~~ 159 (365)
+ +. .+..... .......++..+... .. ....+.|+++||+|.+. .++.|+.+++.+ ..
T Consensus 101 I----~~-----~L~g~~~~~~~~~~~L~~~f~~~---~~----~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s 162 (318)
T 3te6_A 101 I----WF-----AISKENLCGDISLEALNFYITNV---PK----AKKRKTLILIQNPENLL--SEKILQYFEKWISSKNS 162 (318)
T ss_dssp H----HH-----HHSCCC--CCCCHHHHHHHHHHS---CG----GGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSC
T ss_pred H----HH-----HhcCCCCCchHHHHHHHHHHHHh---hh----ccCCceEEEEecHHHhh--cchHHHHHHhcccccCC
Confidence 0 00 0000000 001111223333221 00 12356799999999998 567777777643 33
Q ss_pred ceeEEEEecCCCc----ccHHHhccc--eeEEecCCCHHHHHHHHHHHHHHcC---------------------------
Q 017844 160 SCRLILCCNSSSK----VTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKEG--------------------------- 206 (365)
Q Consensus 160 ~~~~Il~t~~~~~----l~~~l~sR~--~~i~~~~~~~~~~~~iL~~~~~~~~--------------------------- 206 (365)
++.+|+++|+.+. +.++++||+ ..+.|++++.+++.+++++++....
T Consensus 163 ~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 242 (318)
T 3te6_A 163 KLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKI 242 (318)
T ss_dssp CEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------
T ss_pred cEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 5778888888753 456778998 5799999999999999999987631
Q ss_pred --------CCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHhcC
Q 017844 207 --------LQLPSGFATRLAE---KSNRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 207 --------~~i~~~~~~~i~~---~~~g~lr~ai~~l~~~~~~~ 239 (365)
+.+++++++.+|+ ...||+|+|+++|+.+...+
T Consensus 243 ~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 243 PDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 1478999999999 57899999999999876544
No 39
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.82 E-value=7.4e-18 Score=149.47 Aligned_cols=216 Identities=19% Similarity=0.242 Sum_probs=136.0
Q ss_pred CCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 9 PKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 9 P~~~~~iig~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
+.+|++++|++.+++.++..+.. ....+++|+||||+|||++|+++++++..+ .+.+++..+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~~~~~--- 75 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMAGAEF--- 75 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEETTTT---
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEechHHH---
Confidence 46899999999999888876632 122349999999999999999999976322 112222111
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC------------H
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------R 144 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------------~ 144 (365)
.. .........++..+..... ..+.|++|||+|.+. .
T Consensus 76 ------------------~~----~~~~~~~~~~~~~~~~a~~---------~~~~vl~iDeid~l~~~~~~~~~~~~~~ 124 (262)
T 2qz4_A 76 ------------------VE----VIGGLGAARVRSLFKEARA---------RAPCIVYIDEIDAVGKKRSTTMSGFSNT 124 (262)
T ss_dssp ------------------SS----SSTTHHHHHHHHHHHHHHH---------TCSEEEEEECC-----------------
T ss_pred ------------------Hh----hccChhHHHHHHHHHHHHh---------cCCeEEEEeCcchhhccccccccCccch
Confidence 00 0011111123344443322 234799999999883 2
Q ss_pred HHHHHHHHH---Hhh--hcCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HH
Q 017844 145 EAQHSLRRT---MEK--YSASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-AT 215 (365)
Q Consensus 145 ~~~~~Ll~~---le~--~~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~-~~ 215 (365)
..+..+..+ ++. ...++.+|.++|.+..+++++++ |+ ..+.|+.|+.++..++++..+.+.+...+++. ..
T Consensus 125 ~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~ 204 (262)
T 2qz4_A 125 EEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQ 204 (262)
T ss_dssp --CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHH
T ss_pred hHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHH
Confidence 233334444 443 23467788888888889999998 88 58999999999999999999998888777664 57
Q ss_pred HHHHHcCCC-HHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHH
Q 017844 216 RLAEKSNRS-LRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIAS 262 (365)
Q Consensus 216 ~i~~~~~g~-lr~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 262 (365)
.++..+.|. .+...++++.++..+.. .....+...++...+.++..
T Consensus 205 ~l~~~~~g~~~~~l~~l~~~a~~~a~~-~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 205 RLAELTPGFSGADIANICNEAALHAAR-EGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHhcc
Confidence 888888774 55666777776655432 12234556666665555443
No 40
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.81 E-value=1.8e-19 Score=163.82 Aligned_cols=194 Identities=16% Similarity=0.279 Sum_probs=131.1
Q ss_pred CccccCHHHHHHHHHHHHc--------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844 13 DQVIVHQDIAQNLKKLVTE--------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~--------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~ 78 (365)
++++|++.+++.+...+.. ....+++|+||||||||++++++++.+.++ .+.+++..+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~---~~~i~~~~~----- 86 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKF----- 86 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGG-----
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEcchhc-----
Confidence 3589999999988887754 223449999999999999999999977321 222332221
Q ss_pred CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH------------
Q 017844 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA------------ 146 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~------------ 146 (365)
... .+. +......+++.+. ..+-.......+.|++|||++.+....
T Consensus 87 -----------~~~---~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~ 144 (310)
T 1ofh_A 87 -----------TEV---GYV----GKEVDSIIRDLTD----SAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGV 144 (310)
T ss_dssp -----------SSC---CSG----GGSTTHHHHHHHH----TTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHH
T ss_pred -----------ccC---Ccc----CccHHHHHHHHHH----HhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHH
Confidence 000 000 1011111222222 110000001135799999999987544
Q ss_pred HHHHHHHHhhh----------cCceeEEEEe----cCCCcccHHHhccce-eEEecCCCHHHHHHHHHH-----------
Q 017844 147 QHSLRRTMEKY----------SASCRLILCC----NSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEF----------- 200 (365)
Q Consensus 147 ~~~Ll~~le~~----------~~~~~~Il~t----~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~----------- 200 (365)
++.|++.+++. ..++.+|+++ +.+..+.+++.+||. .+.|++|+.+++.+++++
T Consensus 145 ~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 224 (310)
T 1ofh_A 145 QRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA 224 (310)
T ss_dssp HHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHH
Confidence 88899999863 2356677764 345578999999995 699999999999999983
Q ss_pred HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Q 017844 201 IAKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCR 236 (365)
Q Consensus 201 ~~~~~~~--~i~~~~~~~i~~~~--------~g~lr~ai~~l~~~~ 236 (365)
.+...+. .+++++++.|++.+ .||+|.+.+.++.+.
T Consensus 225 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 225 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp HHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred HHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 2333453 68999999999987 799999999999865
No 41
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.81 E-value=2.8e-19 Score=162.79 Aligned_cols=201 Identities=15% Similarity=0.262 Sum_probs=139.3
Q ss_pred CccccCHHHHHHHHHHHHcC--------CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~--------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
++++|++.+++.+...+..+ +.. +++|+||||||||++|+++++.+.+.....+.+++..+ . ..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~-~----~~-- 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY-M----EK-- 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC-C----ST--
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc-c----cc--
Confidence 46789999999988888653 222 49999999999999999999987665443444444322 0 00
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----- 158 (365)
......+...+...+......+ ...+.. ....+++|||++.+++..++.|++.|++..
T Consensus 90 -----~~~~~l~g~~~~~~~~~~~~~~---~~~~~~---------~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~ 152 (311)
T 4fcw_A 90 -----HAVSRLIGAPPGYVGYEEGGQL---TEAVRR---------RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSH 152 (311)
T ss_dssp -----THHHHHHCCCTTSTTTTTCCHH---HHHHHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTT
T ss_pred -----ccHHHhcCCCCccccccccchH---HHHHHh---------CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCC
Confidence 0000011111111111111111 122221 123799999999999999999999999754
Q ss_pred ------CceeEEEEecC--------------------------CCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHc
Q 017844 159 ------ASCRLILCCNS--------------------------SSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE 205 (365)
Q Consensus 159 ------~~~~~Il~t~~--------------------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~ 205 (365)
.++.+|++||. ...+.+++.+|| ..+.|.+|+.+++..++...+.+.
T Consensus 153 ~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 153 GRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp SCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred CCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 25558888887 335778999999 689999999999999998876542
Q ss_pred ---------CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 017844 206 ---------GLQLPSGFATRLAEKS---NRSLRRAILSFETCRV 237 (365)
Q Consensus 206 ---------~~~i~~~~~~~i~~~~---~g~lr~ai~~l~~~~~ 237 (365)
.+.+++++++.+++.+ .|++|.+.+.++.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 233 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 3468999999999964 5999999999987654
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=6.2e-19 Score=158.53 Aligned_cols=195 Identities=18% Similarity=0.273 Sum_probs=131.7
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHHc-------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
.+..+.+|++++|++.+++.+..++.. ....+++|+||||||||++++++++.+..+ .+.+++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~---~~~v~~~ 85 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT---FIRVVGS 85 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE---EEEEEGG
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEehH
Confidence 455567899999999999999887743 233349999999999999999999975221 1111111
Q ss_pred cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC---------
Q 017844 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--------- 142 (365)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L--------- 142 (365)
.+ .....+ .....++..+..... ..+.|++|||+|.+
T Consensus 86 ~~------------------------~~~~~~-~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~~~ 131 (285)
T 3h4m_A 86 EL------------------------VKKFIG-EGASLVKDIFKLAKE---------KAPSIIFIDEIDAIAAKRTDALT 131 (285)
T ss_dssp GG------------------------CCCSTT-HHHHHHHHHHHHHHH---------TCSEEEEEETTHHHHBCCSSSCC
T ss_pred HH------------------------HHhccc-hHHHHHHHHHHHHHH---------cCCeEEEEECHHHhcccCccccC
Confidence 11 000001 111123333333322 23479999999987
Q ss_pred --CHHHHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844 143 --SREAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (365)
Q Consensus 143 --~~~~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~ 212 (365)
+...+..+..++++. ..++.+|++||.++.+.+++.+ |+. .+.|++|+.++..++++..+...+.. ++.
T Consensus 132 ~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~ 210 (285)
T 3h4m_A 132 GGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDV 210 (285)
T ss_dssp GGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTC
T ss_pred CccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcC
Confidence 445566666666542 3467888889988899999998 884 89999999999999999888765543 233
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHh
Q 017844 213 FATRLAEKSNR-SLRRAILSFETCRV 237 (365)
Q Consensus 213 ~~~~i~~~~~g-~lr~ai~~l~~~~~ 237 (365)
.+..++..+.| +.|...++++.+..
T Consensus 211 ~~~~l~~~~~g~~~~~i~~l~~~a~~ 236 (285)
T 3h4m_A 211 NLEEIAKMTEGCVGAELKAICTEAGM 236 (285)
T ss_dssp CHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 47788888777 55566666655443
No 43
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.81 E-value=8e-19 Score=161.31 Aligned_cols=252 Identities=15% Similarity=0.148 Sum_probs=161.0
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
.|+++++|..+++++|++++++.+...+..+. +++|+||||+|||++++++++.+.++. ..+++. +....
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~~~~---~~i~~~-----~~~~~ 85 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMDLDF---HRIQFT-----PDLLP 85 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTTCCE---EEEECC-----TTCCH
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhCCCe---EEEecC-----CCCCh
Confidence 48999999999999999999999988887754 499999999999999999999763321 111110 00000
Q ss_pred eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh----
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---- 157 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---- 157 (365)
.+. .....+. .. .+... ....+ -...|++|||++.+++..++.|++.+++.
T Consensus 86 ~~l-----~g~~~~~--~~-~~~~~-----------~~~g~------l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~ 140 (331)
T 2r44_A 86 SDL-----IGTMIYN--QH-KGNFE-----------VKKGP------VFSNFILADEVNRSPAKVQSALLECMQEKQVTI 140 (331)
T ss_dssp HHH-----HEEEEEE--TT-TTEEE-----------EEECT------TCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred hhc-----CCceeec--CC-CCceE-----------eccCc------ccccEEEEEccccCCHHHHHHHHHHHhcCceee
Confidence 000 0000000 00 00000 00000 01269999999999999999999999874
Q ss_pred -------cCceeEEEEecCCC-----cccHHHhccce-eEEecCCCHHHHHHHHHHHHHH--------------------
Q 017844 158 -------SASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK-------------------- 204 (365)
Q Consensus 158 -------~~~~~~Il~t~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~-------------------- 204 (365)
+....+|.++|..+ .+.+++++||. .+.+++|+.++..++++..+..
T Consensus 141 ~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (331)
T 2r44_A 141 GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRN 220 (331)
T ss_dssp TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHH
T ss_pred CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHH
Confidence 23344554444222 38899999997 5999999999999999987654
Q ss_pred --cCCCCCHHHHHHHHHHc-----CC---------------CHHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHH
Q 017844 205 --EGLQLPSGFATRLAEKS-----NR---------------SLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIAS 262 (365)
Q Consensus 205 --~~~~i~~~~~~~i~~~~-----~g---------------~lr~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 262 (365)
.++.+++++++++++.+ .| ++|.++++++.+...+.. .....+. .+.+...+.
T Consensus 221 ~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l-~g~~~v~----~~dv~~~~~ 295 (331)
T 2r44_A 221 EINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF-NNRDYVL----PEDIKEVAY 295 (331)
T ss_dssp HHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH-TTCSBCC----HHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH-cCCCCCC----HHHHHHHHH
Confidence 26778999999998753 22 799999998865544321 1111121 234455555
Q ss_pred HHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 017844 263 DIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301 (365)
Q Consensus 263 ~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l 301 (365)
.++..+...... ....+++++.|+.++...+
T Consensus 296 ~vl~~r~~~~~~--------~~~~~~~~~~i~~~i~~~~ 326 (331)
T 2r44_A 296 DILNHRIILNYE--------AEAEGISTRQIIETILRKV 326 (331)
T ss_dssp HHHTTTSEECHH--------HHHTTCCHHHHHHHHHHHC
T ss_pred HHhHhhccCCHH--------HHhcCCCHHHHHHHHHhcC
Confidence 555433221111 1125778888888887654
No 44
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.4e-18 Score=159.26 Aligned_cols=194 Identities=17% Similarity=0.241 Sum_probs=129.9
Q ss_pred ccccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
+++-...+|+++.|.+++++.|++.+.. | ..|. +|||||||||||++|+++|+++..+ .+.+++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~---fi~v~~ 249 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT---FLRIVG 249 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE---EEEEES
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC---EEEEEH
Confidence 4455557999999999999999887631 2 2333 9999999999999999999987322 111111
Q ss_pred ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------
Q 017844 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------ 144 (365)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------ 144 (365)
..+ +. .........+++++....... +.|++|||+|.+..
T Consensus 250 s~l---------------------~s----k~vGesek~ir~lF~~Ar~~a---------P~IIfiDEiDai~~~R~~~~ 295 (437)
T 4b4t_I 250 SEL---------------------IQ----KYLGDGPRLCRQIFKVAGENA---------PSIVFIDEIDAIGTKRYDSN 295 (437)
T ss_dssp GGG---------------------CC----SSSSHHHHHHHHHHHHHHHTC---------SEEEEEEEESSSSCCCSCSS
T ss_pred HHh---------------------hh----ccCchHHHHHHHHHHHHHhcC---------CcEEEEehhhhhcccCCCCC
Confidence 111 10 111112234556665554433 47999999997731
Q ss_pred -----H---HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844 145 -----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (365)
Q Consensus 145 -----~---~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~ 211 (365)
. ..+.|+..++.. ..++.+|++||+++.+++++++ |+. .|+|+.|+.++..++++.++.+..+. ++
T Consensus 296 ~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~d 374 (437)
T 4b4t_I 296 SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-ED 374 (437)
T ss_dssp CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SC
T ss_pred CCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-Cc
Confidence 2 234555555543 3467899999999999999998 774 79999999999999999888654432 12
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHHH
Q 017844 212 GFATRLAEKSNR-SLRRAILSFETC 235 (365)
Q Consensus 212 ~~~~~i~~~~~g-~lr~ai~~l~~~ 235 (365)
-.++.||+.+.| +.++..+++..+
T Consensus 375 vdl~~LA~~T~GfSGADI~~l~~eA 399 (437)
T 4b4t_I 375 VNLETLVTTKDDLSGADIQAMCTEA 399 (437)
T ss_dssp CCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 247888888776 444444444443
No 45
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.4e-18 Score=157.96 Aligned_cols=193 Identities=16% Similarity=0.218 Sum_probs=128.2
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHH-----------cC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
++-...+|+++.|.+++++.|++.+. -| ..|. +|||||||||||++|+++|+++..+ .+.+++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~---fi~vs~s 277 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT---FIRVIGS 277 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE---EEEEEGG
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC---eEEEEhH
Confidence 34334689999999999999988763 13 3333 9999999999999999999987432 1111111
Q ss_pred cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-------
Q 017844 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------- 144 (365)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------- 144 (365)
.+ + . .........+++++...... .+.|++|||+|.+..
T Consensus 278 ~L---------------------~---s-k~vGesek~ir~lF~~Ar~~---------aP~IIfiDEiDai~~~R~~~~~ 323 (467)
T 4b4t_H 278 EL---------------------V---Q-KYVGEGARMVRELFEMARTK---------KACIIFFDEIDAVGGARFDDGA 323 (467)
T ss_dssp GG---------------------C---C-CSSSHHHHHHHHHHHHHHHT---------CSEEEEEECCTTTSBCCSSSSC
T ss_pred Hh---------------------h---c-ccCCHHHHHHHHHHHHHHhc---------CCceEeecccccccccccCcCC
Confidence 11 1 0 11111223456666555443 347999999998731
Q ss_pred ----H---HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844 145 ----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (365)
Q Consensus 145 ----~---~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~ 212 (365)
. ..+.++..|+.. ..++.+|++||+++.+++++++ |+. .|+|+.|+.+++.++++.++++..+. ++-
T Consensus 324 ~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dv 402 (467)
T 4b4t_H 324 GGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGI 402 (467)
T ss_dssp GGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSC
T ss_pred CccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCC
Confidence 1 234455555533 3457788999999999999987 884 89999999999999999887654432 122
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHH
Q 017844 213 FATRLAEKSNR-SLRRAILSFETC 235 (365)
Q Consensus 213 ~~~~i~~~~~g-~lr~ai~~l~~~ 235 (365)
.++.||+.+.| +..+..+++..+
T Consensus 403 dl~~LA~~T~GfSGADI~~l~~eA 426 (467)
T 4b4t_H 403 RWELISRLCPNSTGAELRSVCTEA 426 (467)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHH
Confidence 37788888876 334444444433
No 46
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=6.4e-18 Score=158.36 Aligned_cols=193 Identities=18% Similarity=0.226 Sum_probs=128.8
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHH-----------cC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
++-.+.+|+++.|.+++++.|++.+. .| ..|. +|||||||||||++|+++|+++..+ .+.+++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~---f~~v~~s 249 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT---FLKLAAP 249 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGG
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC---EEEEehh
Confidence 34455689999999999999987652 12 2333 9999999999999999999987332 1111111
Q ss_pred cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--------
Q 017844 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (365)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-------- 143 (365)
.+ + . .........++.++....... +.|++|||+|.+.
T Consensus 250 ~l---------------------~---~-~~vGese~~ir~lF~~A~~~a---------P~IifiDEiDal~~~R~~~~~ 295 (434)
T 4b4t_M 250 QL---------------------V---Q-MYIGEGAKLVRDAFALAKEKA---------PTIIFIDELDAIGTKRFDSEK 295 (434)
T ss_dssp GG---------------------C---S-SCSSHHHHHHHHHHHHHHHHC---------SEEEEEECTHHHHCCCSSGGG
T ss_pred hh---------------------h---h-cccchHHHHHHHHHHHHHhcC---------CeEEeecchhhhhhccCCCCC
Confidence 11 1 0 111112234556665554433 3799999998761
Q ss_pred ---HH---HHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844 144 ---RE---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (365)
Q Consensus 144 ---~~---~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~ 212 (365)
.. ..+.|+..|+... .++.+|.+||+++.+++++++ |+. .|+|+.|+.+++.++++.++.+.... ++-
T Consensus 296 ~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dv 374 (434)
T 4b4t_M 296 SGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDI 374 (434)
T ss_dssp GTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCC
T ss_pred CCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcC
Confidence 12 2345666666543 356788899999999999988 774 89999999999999999888765432 112
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHH
Q 017844 213 FATRLAEKSNR-SLRRAILSFETC 235 (365)
Q Consensus 213 ~~~~i~~~~~g-~lr~ai~~l~~~ 235 (365)
.++.||+.+.| +.++.-+++..+
T Consensus 375 dl~~lA~~t~G~sGADi~~l~~eA 398 (434)
T 4b4t_M 375 NWQELARSTDEFNGAQLKAVTVEA 398 (434)
T ss_dssp CHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHH
Confidence 37888888776 444444444433
No 47
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.78 E-value=3.9e-19 Score=149.66 Aligned_cols=171 Identities=15% Similarity=0.281 Sum_probs=113.5
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
+|.++|+|.+|++++|+++.++.+..++..+...+++|+||+|+|||++++.+++.+.+...... ..+..+ ..
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~-~~~~~~------~~ 83 (195)
T 1jbk_A 11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG-LKGRRV------LA 83 (195)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGG-GTTCEE------EE
T ss_pred HHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh-hcCCcE------EE
Confidence 58899999999999999999999999998776677999999999999999999998754221100 000000 00
Q ss_pred eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------HHHHHHHHH
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHSLRRT 153 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------~~~~~Ll~~ 153 (365)
.++ ... .............+.+.+..+.. ..++.+++|||++.+.. ..++.|...
T Consensus 84 ~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~ 146 (195)
T 1jbk_A 84 LDM--GAL-------VAGAKYRGEFEERLKGVLNDLAK--------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA 146 (195)
T ss_dssp ECH--HHH-------HTTTCSHHHHHHHHHHHHHHHHH--------STTTEEEEEETGGGGTT------CCCCHHHHHHH
T ss_pred eeH--HHH-------hccCCccccHHHHHHHHHHHHhh--------cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh
Confidence 000 000 00000000001123333333332 23457999999998853 235666666
Q ss_pred HhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHH
Q 017844 154 MEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVL 198 (365)
Q Consensus 154 le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL 198 (365)
++. .++.+|++++... .+.+++.+||..+.|++|+.+++.+++
T Consensus 147 ~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 147 LAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred hcc--CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 654 3677888888765 578999999999999999999988765
No 48
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.77 E-value=2.3e-18 Score=161.07 Aligned_cols=217 Identities=15% Similarity=0.209 Sum_probs=140.1
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCC---CCccceecccccee
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP---GAEKVKVENKTWKI 75 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKTtla~~la~~l~~~---~~~~i~~~~~~~~~ 75 (365)
|..+|+| ++++|++..++.+..++.. +...+++|+||+|+||||+++.+++.+... ....+++++... .
T Consensus 13 l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~-~ 88 (386)
T 2qby_A 13 LLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI-D 88 (386)
T ss_dssp GSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH-C
T ss_pred CCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC-C
Confidence 4556666 7789999999999988864 333449999999999999999999976432 223333433211 0
Q ss_pred cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC----HHHHHHHH
Q 017844 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLR 151 (365)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~----~~~~~~Ll 151 (365)
.+ .... ..+. ..+.......+. ......+.+...... .+.+.+++|||++.+. .+....|+
T Consensus 89 ~~----~~~~-~~i~--~~l~~~~~~~~~-~~~~~~~~l~~~l~~-------~~~~~vlilDE~~~l~~~~~~~~l~~l~ 153 (386)
T 2qby_A 89 TP----YRVL-ADLL--ESLDVKVPFTGL-SIAELYRRLVKAVRD-------YGSQVVIVLDEIDAFVKKYNDDILYKLS 153 (386)
T ss_dssp SH----HHHH-HHHT--TTTSCCCCSSSC-CHHHHHHHHHHHHHT-------CCSCEEEEEETHHHHHHSSCSTHHHHHH
T ss_pred CH----HHHH-HHHH--HHhCCCCCCCCC-CHHHHHHHHHHHHhc-------cCCeEEEEEcChhhhhccCcCHHHHHHh
Confidence 00 0000 0000 000000001111 111111222222211 2346899999998775 34555666
Q ss_pred HHHhhh-cCceeEEEEecCCC---cccHHHhccc--eeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcC-
Q 017844 152 RTMEKY-SASCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKSN- 222 (365)
Q Consensus 152 ~~le~~-~~~~~~Il~t~~~~---~l~~~l~sR~--~~i~~~~~~~~~~~~iL~~~~~~~--~~~i~~~~~~~i~~~~~- 222 (365)
+.+++. ..++.+|++++... .+.+.+.+|+ ..+.|++++.+++.+++...+... ...+++++++.+++.+.
T Consensus 154 ~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (386)
T 2qby_A 154 RINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR 233 (386)
T ss_dssp HHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred hchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 666542 34677888888773 5778899999 689999999999999999887653 35789999999999888
Q ss_pred --CCHHHHHHHHHHHHhc
Q 017844 223 --RSLRRAILSFETCRVQ 238 (365)
Q Consensus 223 --g~lr~ai~~l~~~~~~ 238 (365)
|++|.++++++.++..
T Consensus 234 ~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 234 EHGDARRALDLLRVSGEI 251 (386)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 9999999999877654
No 49
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.6e-17 Score=154.13 Aligned_cols=190 Identities=21% Similarity=0.283 Sum_probs=127.6
Q ss_pred CCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~ 74 (365)
...+|+|+.|.+++++.|+..+.. | ..|. +|||||||||||++|+++|+++..+ .+.+++..+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~---~~~v~~~~l- 242 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA---FIRVNGSEF- 242 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE---EEEEEGGGT-
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEecchh-
Confidence 335899999999999999887631 3 2233 9999999999999999999987322 111111111
Q ss_pred ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------
Q 017844 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----------- 143 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~----------- 143 (365)
+ +.........+++++...... .+.|+++||+|.+.
T Consensus 243 --------------------~----~~~~Ge~e~~ir~lF~~A~~~---------aP~IifiDEiD~i~~~R~~~~~~~~ 289 (428)
T 4b4t_K 243 --------------------V----HKYLGEGPRMVRDVFRLAREN---------APSIIFIDEVDSIATKRFDAQTGSD 289 (428)
T ss_dssp --------------------C----CSSCSHHHHHHHHHHHHHHHT---------CSEEEEEECTHHHHCSCSSSCSCCC
T ss_pred --------------------h----ccccchhHHHHHHHHHHHHHc---------CCCeeechhhhhhhccccCCCCCCC
Confidence 1 011111223456666655443 34799999998551
Q ss_pred ---HHHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEec-CCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 017844 144 ---REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRIN-SPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (365)
Q Consensus 144 ---~~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~-~~~~~~~~~iL~~~~~~~~~~i~~~~~ 214 (365)
....+.|+..|+.. ..++.+|++||+++.+++++++ |+. .|+|+ .|+.++...+++.++.+..+. ++..+
T Consensus 290 ~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl 368 (428)
T 4b4t_K 290 REVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADL 368 (428)
T ss_dssp CHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCH
T ss_pred hHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCH
Confidence 12355677777754 3457899999999999999998 664 79996 789999999999888755432 22247
Q ss_pred HHHHHHcCC-CHHHHHHHHHHH
Q 017844 215 TRLAEKSNR-SLRRAILSFETC 235 (365)
Q Consensus 215 ~~i~~~~~g-~lr~ai~~l~~~ 235 (365)
+.+|..+.| +.++..+++..+
T Consensus 369 ~~lA~~t~G~sgadi~~l~~eA 390 (428)
T 4b4t_K 369 DSLIIRNDSLSGAVIAAIMQEA 390 (428)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 888888776 444444444443
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.76 E-value=3e-18 Score=158.50 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=134.5
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCC---CccceeccccceecCCCcc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG---AEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~---~~~i~~~~~~~~~~~~~~~ 81 (365)
..-+|.+|++++|++.+++.+......+...+++|+||||||||++|+++++.+.... ... +++... .++..+
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~--~~~~~~--~~~~~~ 91 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP--VSSPNV--EMIPDW 91 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT--TCCSSG--GGSCTT
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCcccccccccc--cccccc--ccccch
Confidence 3446789999999999887766655444445699999999999999999999663210 000 111111 111111
Q ss_pred eecccccccc----ccceecCCCCc--CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 017844 82 IDLELTTLSS----ANHVELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME 155 (365)
Q Consensus 82 ~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le 155 (365)
..+ ..+.. ...+....... .......+...+.........+........+++|||++.++.+.++.|++.++
T Consensus 92 ~~~--~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le 169 (350)
T 1g8p_A 92 ATV--LSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQ 169 (350)
T ss_dssp CCC--SCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred hhh--hccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHh
Confidence 111 00000 00011000000 00000000111110000000000001124799999999999999999999998
Q ss_pred hh-------------cCceeEEEEecCCC-cccHHHhcccee-EEecCCC-HHHHHHHHHHH------------------
Q 017844 156 KY-------------SASCRLILCCNSSS-KVTEAIRSRCLN-IRINSPT-EEQIVKVLEFI------------------ 201 (365)
Q Consensus 156 ~~-------------~~~~~~Il~t~~~~-~l~~~l~sR~~~-i~~~~~~-~~~~~~iL~~~------------------ 201 (365)
+. +.++.+|.++|..+ .+.+++++||.. +.+++|+ .++..+++..+
T Consensus 170 ~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~ 249 (350)
T 1g8p_A 170 SGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKD 249 (350)
T ss_dssp HSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccch
Confidence 73 23566777777544 789999999974 9999994 55555666542
Q ss_pred -----------HHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHhcC
Q 017844 202 -----------AKKEGLQLPSGFATRLAEKSNR----SLRRAILSFETCRVQQ 239 (365)
Q Consensus 202 -----------~~~~~~~i~~~~~~~i~~~~~g----~lr~ai~~l~~~~~~~ 239 (365)
....++.+++++++.|++.+.+ ++|.++++++.+...+
T Consensus 250 ~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A 302 (350)
T 1g8p_A 250 MDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALA 302 (350)
T ss_dssp HHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 2234568999999999998766 8999999998765443
No 51
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.4e-17 Score=153.62 Aligned_cols=189 Identities=15% Similarity=0.185 Sum_probs=127.0
Q ss_pred CCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee
Q 017844 9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (365)
Q Consensus 9 P~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~ 75 (365)
..+|+++.|.+++++.|+..+.. | ..|. +|||||||||||++|+++|+++..+. +.+++..+
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~~s~l-- 251 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSPASGI-- 251 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGGGT--
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEehhhh--
Confidence 35899999999999999887741 3 2333 99999999999999999999873321 11111111
Q ss_pred cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----------
Q 017844 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------- 144 (365)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----------- 144 (365)
+ +.+.......++..+...... .+.|++|||+|.+..
T Consensus 252 -------------------~----sk~~Gese~~ir~~F~~A~~~---------~P~IifiDEiDai~~~R~~~~~~~~~ 299 (437)
T 4b4t_L 252 -------------------V----DKYIGESARIIREMFAYAKEH---------EPCIIFMDEVDAIGGRRFSEGTSADR 299 (437)
T ss_dssp -------------------C----CSSSSHHHHHHHHHHHHHHHS---------CSEEEEEECCCSSSCCCSSSCCSSTT
T ss_pred -------------------c----cccchHHHHHHHHHHHHHHhc---------CCceeeeecccccccccccCCCCcch
Confidence 1 011111122355555554433 347999999998731
Q ss_pred ---HHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhcc--c-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017844 145 ---EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216 (365)
Q Consensus 145 ---~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~ 216 (365)
...+.||..|+.. ..++.+|++||+++.++++++++ + ..|+|+.|+.+++.++++.++.+.... ++..++.
T Consensus 300 ~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~ 378 (437)
T 4b4t_L 300 EIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEA 378 (437)
T ss_dssp HHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHH
T ss_pred HHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHH
Confidence 1345567777654 34578999999999999999876 4 379999999999999999888764432 2223788
Q ss_pred HHHHcCC-CHHHHHHHHHHH
Q 017844 217 LAEKSNR-SLRRAILSFETC 235 (365)
Q Consensus 217 i~~~~~g-~lr~ai~~l~~~ 235 (365)
+|+.+.| +.++..+++..+
T Consensus 379 lA~~t~G~sGADi~~l~~eA 398 (437)
T 4b4t_L 379 AVKMSDGFNGADIRNCATEA 398 (437)
T ss_dssp HHHTCCSCCHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHH
Confidence 8888776 444444444433
No 52
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.75 E-value=4.8e-17 Score=144.63 Aligned_cols=204 Identities=13% Similarity=0.104 Sum_probs=123.7
Q ss_pred CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (365)
.+|++++|+....+.+...+.. ....+++|+||+|||||++|++++..........+.+++..+ . + .
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~-~-------~---~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL-N-------E---N 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS-C-------H---H
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC-C-------h---h
Confidence 3789999998888777665543 223449999999999999999999865433222333333221 0 0 0
Q ss_pred ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh----------
Q 017844 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------- 157 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---------- 157 (365)
... ...+.... +.+... .......+. .....+++|||++.++.+.++.|++.+++.
T Consensus 72 ~~~-~~l~g~~~---~~~~g~-~~~~~~~l~---------~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLD-SELFGHEA---GAFTGA-QKRHPGRFE---------RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHH-HHHHCCC-------------CCCCHHH---------HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHH-HHhcCCcc---cccccc-cccccchhh---------hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCccc
Confidence 000 00000000 000000 000000000 012369999999999999999999999863
Q ss_pred -cCceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHH----HHHcCC----CCCHHHHHHH
Q 017844 158 -SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFI----AKKEGL----QLPSGFATRL 217 (365)
Q Consensus 158 -~~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~----~~~~~~----~i~~~~~~~i 217 (365)
+.++++|++||... .+.+.+.+|+. .+.+++++. +++..++..+ +.+.+. .+++++++.+
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L 217 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETL 217 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHH
Confidence 34678888888752 36789999984 577777765 5666554443 444554 6899999999
Q ss_pred HHH-cCCCHHHHHHHHHHHHhc
Q 017844 218 AEK-SNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 218 ~~~-~~g~lr~ai~~l~~~~~~ 238 (365)
... +.||+|++.+.++.++..
T Consensus 218 ~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 218 LNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHh
Confidence 876 499999999999987654
No 53
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.75 E-value=3.6e-17 Score=155.69 Aligned_cols=198 Identities=18% Similarity=0.265 Sum_probs=134.2
Q ss_pred cccc-cCCCCCCccccCHHHHHHHHHHHHc-----------CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844 3 WVDK-YRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (365)
Q Consensus 3 w~~k-~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~ 69 (365)
|.++ ..+.+|++++|++++++.+++.+.. .+.+. ++|+||||||||++++++++++..+ .+.++
T Consensus 5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~---f~~is 81 (476)
T 2ce7_A 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP---FFHIS 81 (476)
T ss_dssp CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC---EEEEE
T ss_pred eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---eeeCC
Confidence 4444 3445899999999999888876642 23343 9999999999999999999976322 12222
Q ss_pred cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----
Q 017844 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----- 144 (365)
+..+ .... .+ .....++..+..... ..+.||+|||+|.+..
T Consensus 82 ~~~~---------------------~~~~---~g-~~~~~~r~lf~~A~~---------~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 82 GSDF---------------------VELF---VG-VGAARVRDLFAQAKA---------HAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp GGGT---------------------TTCC---TT-HHHHHHHHHHHHHHH---------TCSEEEEEETGGGTCCC----
T ss_pred HHHH---------------------HHHH---hc-ccHHHHHHHHHHHHh---------cCCCEEEEechhhhhhhcccc
Confidence 2211 1100 01 111234445444332 2358999999988742
Q ss_pred ---------HHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCC
Q 017844 145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (365)
Q Consensus 145 ---------~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~ 210 (365)
..++.|+..++.. ..++.+|.+||.++.+++++++ |+. .+.++.|+.+++.++++.++++..+. +
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~ 206 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-E 206 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-T
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-c
Confidence 2456677777642 3467888889888888888876 775 89999999999999999887654432 2
Q ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHhc
Q 017844 211 SGFATRLAEKSNRSL-RRAILSFETCRVQ 238 (365)
Q Consensus 211 ~~~~~~i~~~~~g~l-r~ai~~l~~~~~~ 238 (365)
+..+..++..+.|.. |+..++++.++..
T Consensus 207 ~v~l~~la~~t~G~sgadL~~lv~~Aal~ 235 (476)
T 2ce7_A 207 DVNLEIIAKRTPGFVGADLENLVNEAALL 235 (476)
T ss_dssp TCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 223778999999977 7788888766544
No 54
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.75 E-value=1.6e-17 Score=150.46 Aligned_cols=194 Identities=21% Similarity=0.235 Sum_probs=130.1
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
.+..+.+|++++|++.+++.++.++.. + ..+ +++|+||||||||++|+++++.+.. ..+.+++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~---~~i~v~~~ 83 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISIKGP 83 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---EEEEECHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC---CEEEEEhH
Confidence 456778999999999999999988753 1 223 3999999999999999999997631 22222221
Q ss_pred cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH------
Q 017844 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------ 145 (365)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~------ 145 (365)
.+ .... .+. ....++..+..... ..+.+++|||+|.+...
T Consensus 84 ~l---------------------~~~~---~g~-~~~~~~~~f~~a~~---------~~p~il~iDEid~l~~~~~~~~~ 129 (301)
T 3cf0_A 84 EL---------------------LTMW---FGE-SEANVREIFDKARQ---------AAPCVLFFDELDSIAKARGGNIG 129 (301)
T ss_dssp HH---------------------HHHH---HTT-CTTHHHHHHHHHHH---------TCSEEEEECSTTHHHHHHTTTTC
T ss_pred HH---------------------Hhhh---cCc-hHHHHHHHHHHHHh---------cCCeEEEEEChHHHhhccCCCcC
Confidence 11 0000 000 01124444444332 23479999999976543
Q ss_pred --------HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844 146 --------AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (365)
Q Consensus 146 --------~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~ 212 (365)
.++.|+..++.. ..++.+|++||.++.+++++++ |+. .+.|+.|+.+++.++++.++.+.+.. ++.
T Consensus 130 ~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~ 208 (301)
T 3cf0_A 130 DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDV 208 (301)
T ss_dssp CSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSC
T ss_pred CcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccc
Confidence 357788888753 3467888999999889999988 884 89999999999999999988776543 222
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHHH
Q 017844 213 FATRLAEKSNR-SLRRAILSFETCR 236 (365)
Q Consensus 213 ~~~~i~~~~~g-~lr~ai~~l~~~~ 236 (365)
.++.++..+.| +.++..++++.++
T Consensus 209 ~~~~la~~~~g~sg~dl~~l~~~a~ 233 (301)
T 3cf0_A 209 DLEFLAKMTNGFSGADLTEICQRAC 233 (301)
T ss_dssp CHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34566665554 3345555555443
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.75 E-value=3.3e-18 Score=175.70 Aligned_cols=205 Identities=18% Similarity=0.264 Sum_probs=139.0
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
.|.++|||.+|++++|+++.++.+...+..+..++++|+||||+|||++++.+++.+.+..... ...+..
T Consensus 159 ~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~-~l~~~~--------- 228 (854)
T 1qvr_A 159 DLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE-GLKGKR--------- 228 (854)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT-TSTTCE---------
T ss_pred hHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCch-hhcCCe---------
Confidence 4889999999999999999999999999887777799999999999999999999874322110 000000
Q ss_pred eeccccccccccceecCCCCc------CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--------HHHH
Q 017844 82 IDLELTTLSSANHVELSPSDA------GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------REAQ 147 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--------~~~~ 147 (365)
.+.+..... .......++..+..+.. ..++.|++|||+|.+. .++.
T Consensus 229 ------------~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~--------~~~~~iL~IDEi~~l~~~~~~~g~~~~~ 288 (854)
T 1qvr_A 229 ------------IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ--------SQGEVILFIDELHTVVGAGKAEGAVDAG 288 (854)
T ss_dssp ------------EEEECC-----------CHHHHHHHHHHHHHT--------TCSSEEEEECCC----------------
T ss_pred ------------EEEeehHHhhccCccchHHHHHHHHHHHHHHh--------cCCCeEEEEecHHHHhccCCccchHHHH
Confidence 011111110 00111123344444332 1245799999999986 3455
Q ss_pred HHHHHHHhhhcCceeEEEEecCCC----cccHHHhccceeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHH
Q 017844 148 HSLRRTMEKYSASCRLILCCNSSS----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----KEGLQLPSGFATRLAE 219 (365)
Q Consensus 148 ~~Ll~~le~~~~~~~~Il~t~~~~----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~----~~~~~i~~~~~~~i~~ 219 (365)
+.|...++. ..+.+|++|+..+ .+.+++.+||..+.|++|+.++...+++..+. ..++.++++++..+++
T Consensus 289 ~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ 366 (854)
T 1qvr_A 289 NMLKPALAR--GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAAT 366 (854)
T ss_dssp ---HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred HHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHH
Confidence 667777764 3567888887654 36789999999999999999999999987665 3578899999999999
Q ss_pred HcCC------CHHHHHHHHHHHHhc
Q 017844 220 KSNR------SLRRAILSFETCRVQ 238 (365)
Q Consensus 220 ~~~g------~lr~ai~~l~~~~~~ 238 (365)
.+.| -++.++.+++.++..
T Consensus 367 ls~r~i~~~~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 367 LSHRYITERRLPDKAIDLIDEAAAR 391 (854)
T ss_dssp HHHHHCCSSCTHHHHHHHHHHHHHH
T ss_pred HHhhhcccccChHHHHHHHHHHHHH
Confidence 7743 378899998876654
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=8.1e-18 Score=170.97 Aligned_cols=200 Identities=15% Similarity=0.236 Sum_probs=141.5
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
.|.++++|..+++++|+++.++.+...+.....+|++|+||||||||++|+++++.+.+........++ .
T Consensus 169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~-~--------- 238 (758)
T 3pxi_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK-R--------- 238 (758)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC-C---------
T ss_pred HHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCC-e---------
Confidence 488999999999999999999999999988877889999999999999999999987553321110000 0
Q ss_pred eeccccccccccceecCC-CCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 82 IDLELTTLSSANHVELSP-SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
.+.+.. ..........++..+..+.. .++.|++|| ...++++.|+..++. ..
T Consensus 239 ------------~~~~~~g~~~~G~~e~~l~~~~~~~~~---------~~~~iLfiD----~~~~~~~~L~~~l~~--~~ 291 (758)
T 3pxi_A 239 ------------VMTLDMGTKYRGEFEDRLKKVMDEIRQ---------AGNIILFID----AAIDASNILKPSLAR--GE 291 (758)
T ss_dssp ------------EECC----------CTTHHHHHHHHHT---------CCCCEEEEC----C--------CCCTTS--SS
T ss_pred ------------EEEecccccccchHHHHHHHHHHHHHh---------cCCEEEEEc----CchhHHHHHHHHHhc--CC
Confidence 011111 00011111134555555543 234699999 344577778887773 46
Q ss_pred eeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CH
Q 017844 161 CRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR------SL 225 (365)
Q Consensus 161 ~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~~~~g------~l 225 (365)
+.+|.+||..+ .+++++++||..+.|++|+.+++.++++.++.. .++.++++++..+++.+.+ .+
T Consensus 292 v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p 371 (758)
T 3pxi_A 292 LQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP 371 (758)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred EEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCC
Confidence 88888888877 688999999999999999999999999977765 6788999999999987643 45
Q ss_pred HHHHHHHHHHHhc
Q 017844 226 RRAILSFETCRVQ 238 (365)
Q Consensus 226 r~ai~~l~~~~~~ 238 (365)
+.++.+++.++..
T Consensus 372 ~~ai~ll~~a~~~ 384 (758)
T 3pxi_A 372 DKAIDLIDEAGSK 384 (758)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 7899998876654
No 57
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.74 E-value=1.8e-17 Score=161.58 Aligned_cols=196 Identities=16% Similarity=0.212 Sum_probs=123.9
Q ss_pred CccccCHHHHHHHHHHHH------cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844 13 DQVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (365)
++++|+++++..+...+. ....++++|+|||||||||+++++++.+.. ....+.+.+.. +.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~~~----------~~-- 147 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGGVR----------DE-- 147 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC----------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecccc----------hh--
Confidence 347899999887766543 123345999999999999999999997622 22211111100 00
Q ss_pred cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhhc----
Q 017844 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTMEKYS---- 158 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~----~~~~Ll~~le~~~---- 158 (365)
.........-.+.. .......+... .....+++|||++.+... .++.|++.|++..
T Consensus 148 -----~~~~g~~~~~ig~~----~~~~~~~~~~a-------~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~ 211 (543)
T 3m6a_A 148 -----SEIRGHRRTYVGAM----PGRIIQGMKKA-------GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSF 211 (543)
T ss_dssp -------------------------CHHHHHHTT-------CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBC
T ss_pred -----hhhhhHHHHHhccC----chHHHHHHHHh-------hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhccee
Confidence 00000000000000 00111111111 112349999999999877 4578888886432
Q ss_pred -----------CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHH
Q 017844 159 -----------ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-----KE-----GLQLPSGFATRL 217 (365)
Q Consensus 159 -----------~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~-----~~-----~~~i~~~~~~~i 217 (365)
.++.||+++|....+++++++||.++.|++|+.++...++..++. +. ++.++++++..+
T Consensus 212 ~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l 291 (543)
T 3m6a_A 212 SDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDI 291 (543)
T ss_dssp CCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHH
T ss_pred ecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHH
Confidence 456788899999999999999999999999999999999987652 22 456789999998
Q ss_pred HHHcC--CCHHHHHHHHHHHHh
Q 017844 218 AEKSN--RSLRRAILSFETCRV 237 (365)
Q Consensus 218 ~~~~~--g~lr~ai~~l~~~~~ 237 (365)
++... |++|.+.+.++.++.
T Consensus 292 ~~~~~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 292 IRYYTREAGVRSLERQLAAICR 313 (543)
T ss_dssp HHHHCCCSSSHHHHHHHHHHHH
T ss_pred HHhCChhhchhHHHHHHHHHHH
Confidence 87544 789988888876554
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.73 E-value=2e-17 Score=168.19 Aligned_cols=209 Identities=14% Similarity=0.189 Sum_probs=141.8
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
.|.++++|.+|++++|++..++.+...+......+++|+||||||||++++.+++.+.+........++..+
T Consensus 175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~-------- 246 (758)
T 1r6b_X 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY-------- 246 (758)
T ss_dssp BHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE--------
T ss_pred hHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE--------
Confidence 588999999999999999999999999987777779999999999999999999987543321111111000
Q ss_pred eeccccccccccceecCC-CCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHH
Q 017844 82 IDLELTTLSSANHVELSP-SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLR 151 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------~~~~~~Ll 151 (365)
.. .. ..+.. ..........++..++.+. ..+..+++|||+|.+. .+..+.|.
T Consensus 247 -~~-----~~---~~l~~~~~~~g~~e~~l~~~~~~~~---------~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~ 308 (758)
T 1r6b_X 247 -SL-----DI---GSLLAGTKYRGDFEKRFKALLKQLE---------QDTNSILFIDEIHTIIGAGAASGGQVDAANLIK 308 (758)
T ss_dssp -EC-----CC---C---CCCCCSSCHHHHHHHHHHHHS---------SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHS
T ss_pred -EE-----cH---HHHhccccccchHHHHHHHHHHHHH---------hcCCeEEEEechHHHhhcCCCCcchHHHHHHHH
Confidence 00 00 00010 0111111112333333332 1234899999999882 23344444
Q ss_pred HHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcC
Q 017844 152 RTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSN 222 (365)
Q Consensus 152 ~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~~~~ 222 (365)
..++. ....+|.+++.++ ..++++.+||..+.|++|+.+++.+++...+.. .++.++++++..++..+.
T Consensus 309 ~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~ 386 (758)
T 1r6b_X 309 PLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAV 386 (758)
T ss_dssp SCSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHhC--CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Confidence 44443 3567778877543 466889999999999999999999999887765 688899999999998765
Q ss_pred C------CHHHHHHHHHHHHhc
Q 017844 223 R------SLRRAILSFETCRVQ 238 (365)
Q Consensus 223 g------~lr~ai~~l~~~~~~ 238 (365)
| .+..++.+++.++..
T Consensus 387 ~~i~~~~lp~~~i~lld~a~~~ 408 (758)
T 1r6b_X 387 KYINDRHLPDKAIDVIDEAGAR 408 (758)
T ss_dssp HHCTTSCTTHHHHHHHHHHHHH
T ss_pred hhcccccCchHHHHHHHHHHHH
Confidence 4 345788888766543
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.73 E-value=6.5e-17 Score=164.30 Aligned_cols=185 Identities=18% Similarity=0.351 Sum_probs=134.6
Q ss_pred CccccCHHHHHHHHHHHHcCC-------CC--eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 13 DQVIVHQDIAQNLKKLVTEQD-------CP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~~-------~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
++++|++.+++.+...+.... .| +++|+||+|||||++|+++++.+.......+.+++..+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~---------- 560 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY---------- 560 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG----------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc----------
Confidence 468899999988888776321 11 59999999999999999999988766555566665443
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh------
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------ 157 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~------ 157 (365)
.+......+ .+...+.. ..+.|++|||++.++++.++.|++.|++.
T Consensus 561 -----------~~~~~~~~~--------~l~~~~~~---------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~ 612 (758)
T 3pxi_A 561 -----------MEKHSTSGG--------QLTEKVRR---------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSK 612 (758)
T ss_dssp -----------CSSCCCC-----------CHHHHHH---------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC---
T ss_pred -----------ccccccccc--------hhhHHHHh---------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCC
Confidence 000000001 11111111 13469999999999999999999999972
Q ss_pred -----cCceeEEEEecCCCc------------ccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHc---------CCCCC
Q 017844 158 -----SASCRLILCCNSSSK------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE---------GLQLP 210 (365)
Q Consensus 158 -----~~~~~~Il~t~~~~~------------l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~---------~~~i~ 210 (365)
..++.+|++||.... +.+++.+|| .++.|++++.+++..++...+... .+.++
T Consensus 613 g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 692 (758)
T 3pxi_A 613 GRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELT 692 (758)
T ss_dssp --CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred CCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence 346788999986443 789999999 799999999999999998877542 34689
Q ss_pred HHHHHHHHHH---cCCCHHHHHHHHHHH
Q 017844 211 SGFATRLAEK---SNRSLRRAILSFETC 235 (365)
Q Consensus 211 ~~~~~~i~~~---~~g~lr~ai~~l~~~ 235 (365)
+++++.|++. ..|++|.+.+.++..
T Consensus 693 ~~a~~~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 693 DAAKAKVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 9999999875 568888888888754
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.73 E-value=3.7e-18 Score=143.05 Aligned_cols=163 Identities=16% Similarity=0.262 Sum_probs=106.3
Q ss_pred CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
.|.++|+|.+|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+.+...... ..+..+
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~-~~~~~~-------- 81 (187)
T 2p65_A 11 DLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDS-LKGRKL-------- 81 (187)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTT-TTTCEE--------
T ss_pred HHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcch-hcCCeE--------
Confidence 58899999999999999999999999988776677999999999999999999998754221100 000000
Q ss_pred eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHHH
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRR 152 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------~~~~~~Ll~ 152 (365)
..+ ....... ...........+.+.+..+.. ..++.+++|||++.+. ....+.|..
T Consensus 82 ~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~ 146 (187)
T 2p65_A 82 VSL-----DLSSLIA--GAKYRGDFEERLKSILKEVQD--------AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKP 146 (187)
T ss_dssp EEE-----CHHHHHH--HCCSHHHHHHHHHHHHHHHHH--------TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHH
T ss_pred EEE-----eHHHhhc--CCCchhHHHHHHHHHHHHHHh--------cCCceEEEEeCHHHhcccccccccchHHHHHHHH
Confidence 000 0000000 000000001123333333332 1245799999999886 445666666
Q ss_pred HHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCC
Q 017844 153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPT 190 (365)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~ 190 (365)
.+++ .++.+|++++... .+.+++++||..+.+++|+
T Consensus 147 ~~~~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 147 MLAR--GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHT--TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHhc--CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 6664 3677888888665 5789999999999998875
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.71 E-value=3.1e-16 Score=159.50 Aligned_cols=197 Identities=17% Similarity=0.218 Sum_probs=133.9
Q ss_pred CccccCHHHHHHHHHHHHcC--------CC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 13 DQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
+.++|++++++.+..++... +. .+++|+||+|||||++|+++++.+. ...+.+++..+ ...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~---~~~~~i~~s~~-~~~------ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEY-MER------ 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT---CEEEEEEGGGC-SSS------
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc---CCEEEEechhh-cch------
Confidence 35789999998888777531 12 2599999999999999999999772 22344444333 000
Q ss_pred ccccccccccceecCCCCcCccchhH-HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYV-VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---- 158 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---- 158 (365)
......+.. ..+ +.... ...+...+.. ..+.|++|||++.+.++.++.|++.|++..
T Consensus 528 -----~~~~~l~g~---~~g-~~g~~~~~~l~~~~~~---------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~ 589 (758)
T 1r6b_X 528 -----HTVSRLIGA---PPG-YVGFDQGGLLTDAVIK---------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN 589 (758)
T ss_dssp -----SCCSSSCCC---CSC-SHHHHHTTHHHHHHHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEET
T ss_pred -----hhHhhhcCC---CCC-CcCccccchHHHHHHh---------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcC
Confidence 000011111 111 11000 0111222221 234899999999999999999999999742
Q ss_pred -------CceeEEEEecCCC-------------------------cccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHc
Q 017844 159 -------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE 205 (365)
Q Consensus 159 -------~~~~~Il~t~~~~-------------------------~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~ 205 (365)
.++.+|++||... .+.+++++|| .++.|++++.+++..++...+.+.
T Consensus 590 ~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 590 NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp TTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHH
Confidence 3566888888643 5778999999 689999999999999998877632
Q ss_pred ---------CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 017844 206 ---------GLQLPSGFATRLAEKS---NRSLRRAILSFETCRV 237 (365)
Q Consensus 206 ---------~~~i~~~~~~~i~~~~---~g~lr~ai~~l~~~~~ 237 (365)
.+.+++++++.+++.+ ++++|.+.+.++..+.
T Consensus 670 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 670 QVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 3468999999999865 5558888888776543
No 62
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.70 E-value=8.9e-16 Score=138.96 Aligned_cols=203 Identities=16% Similarity=0.142 Sum_probs=129.2
Q ss_pred CccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc
Q 017844 13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (365)
++++|+....+.+...+.. ....+++|+||+|||||++|++++..........+.++|..+ | + ...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~---~-----~---~l~- 69 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL---N-----E---SLL- 69 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC---C-----H---HHH-
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC---C-----h---HHH-
Confidence 4688988888777777654 333449999999999999999999865333333344443222 0 0 000
Q ss_pred cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------C
Q 017844 91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------A 159 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------~ 159 (365)
....+............ .....+.. ....+++|||++.++...+..|++.+++.. .
T Consensus 70 ~~~lfg~~~g~~tg~~~-~~~g~~~~------------a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 70 ESELFGHEKGAFTGADK-RREGRFVE------------ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHHHTCCCSSCCC---C-CCCCHHHH------------HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HHHhcCccccccCchhh-hhcCHHHh------------cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 00000000000000000 00000111 112589999999999999999999998752 4
Q ss_pred ceeEEEEecCCC-------cccHHHhccce--eEEecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc
Q 017844 160 SCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS 221 (365)
Q Consensus 160 ~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~iL~~~~~----~~~---~~i~~~~~~~i~~~~ 221 (365)
++++|++||... .+.+.+.+|+. .+.++++. .+++..++...+. +.+ ..+++++++.+...+
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~ 216 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD 216 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence 578888888762 35678889974 56677776 4666666655443 333 578999999999976
Q ss_pred -CCCHHHHHHHHHHHHhcCC
Q 017844 222 -NRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 222 -~g~lr~ai~~l~~~~~~~~ 240 (365)
.||+|++.+.++.++..+.
T Consensus 217 wpGnvReL~~~l~~~~~~~~ 236 (304)
T 1ojl_A 217 WPGNIRELENAIERAVVLLT 236 (304)
T ss_dssp CSSHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHhCC
Confidence 9999999999998876543
No 63
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=1.1e-16 Score=149.55 Aligned_cols=194 Identities=18% Similarity=0.217 Sum_probs=123.9
Q ss_pred ccccCHHHHHHHHHHHH----c-------------------------C-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCC
Q 017844 14 QVIVHQDIAQNLKKLVT----E-------------------------Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63 (365)
Q Consensus 14 ~iig~~~~~~~l~~~l~----~-------------------------~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~ 63 (365)
.++||+.+++.+..++. . . ..++++|+||||||||++|+++++.+..+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~-- 99 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP-- 99 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC--
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCC--
Confidence 47899999998887772 1 1 12349999999999999999999976221
Q ss_pred ccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC
Q 017844 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS 143 (365)
Q Consensus 64 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~ 143 (365)
.+.+++..+ ... .+. +......+...+.. ..... ......|++|||++.+.
T Consensus 100 -~~~~~~~~~----------------~~~---~~~----g~~~~~~~~~~~~~----~~~~~-~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 100 -IAISDATSL----------------TEA---GYV----GEDVENILTRLLQA----SDWNV-QKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp -EEEEEGGGC----------------C---------------CTHHHHHHHHH----TTTCH-HHHTTSEEEEETGGGC-
T ss_pred -EEEecchhh----------------hhc---CcC----CccHHHHHHHHHhh----ccchh-hhcCCeEEEEcCHHHHh
Confidence 122222111 000 000 11111112222221 10000 01234799999999998
Q ss_pred HH--------------HHHHHHHHHhhhc---------------------CceeEEEEecC-------------------
Q 017844 144 RE--------------AQHSLRRTMEKYS---------------------ASCRLILCCNS------------------- 169 (365)
Q Consensus 144 ~~--------------~~~~Ll~~le~~~---------------------~~~~~Il~t~~------------------- 169 (365)
.. .++.|++.|++.. .++.+|++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~ 230 (376)
T 1um8_A 151 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT 230 (376)
T ss_dssp -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred hhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence 77 8999999999641 34466666651
Q ss_pred ----------------------CCcccHHHhccc-eeEEecCCCHHHHHHHHHH----HHH-------H--cCCCCCHHH
Q 017844 170 ----------------------SSKVTEAIRSRC-LNIRINSPTEEQIVKVLEF----IAK-------K--EGLQLPSGF 213 (365)
Q Consensus 170 ----------------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~----~~~-------~--~~~~i~~~~ 213 (365)
...+.+++.+|+ .++.|++++.+++..++.. ++. . .++.+++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 310 (376)
T 1um8_A 231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEA 310 (376)
T ss_dssp CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHH
T ss_pred chhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHH
Confidence 012568899999 7899999999999999862 221 1 235689999
Q ss_pred HHHHHHHcC---CCHHHHHHHHHHHHhc
Q 017844 214 ATRLAEKSN---RSLRRAILSFETCRVQ 238 (365)
Q Consensus 214 ~~~i~~~~~---g~lr~ai~~l~~~~~~ 238 (365)
++.|++.+. |++|.+.+.++.++..
T Consensus 311 ~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 311 IKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 999999854 9999999999987653
No 64
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.70 E-value=3.1e-18 Score=152.55 Aligned_cols=198 Identities=15% Similarity=0.234 Sum_probs=128.7
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHH-----------cCCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~-----------~~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~ 72 (365)
.++.+.+|++++|++.+++.++..+. ....+ +++|+||||||||++|+++++.+..+. +.+++..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~v~~~~ 79 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF---FSMGGSS 79 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC---CCCCSCT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEechHH
Confidence 46778899999999988888887765 12333 399999999999999999999874322 1222211
Q ss_pred ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-------
Q 017844 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------- 145 (365)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~------- 145 (365)
+ .......... .++..+..... ..+.|++|||+|.+...
T Consensus 80 ~---------------------~~~~~~~~~~----~~~~~~~~a~~---------~~~~vl~iDEid~l~~~~~~~~~~ 125 (268)
T 2r62_A 80 F---------------------IEMFVGLGAS----RVRDLFETAKK---------QAPSIIFIDEIDAIGKSRAAGGVV 125 (268)
T ss_dssp T---------------------TTSCSSSCSS----SSSTTHHHHHH---------SCSCEEEESCGGGTTC--------
T ss_pred H---------------------HHhhcchHHH----HHHHHHHHHHh---------cCCeEEEEeChhhhcccccccccC
Confidence 1 0000000000 01122333222 13479999999988643
Q ss_pred --------HHHHHHHHHhhhc---CceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844 146 --------AQHSLRRTMEKYS---ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (365)
Q Consensus 146 --------~~~~Ll~~le~~~---~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~ 211 (365)
.++.|+..++... ..+.+|+++|.+..+++++.+ |+ ..+.|++|+.+++.++++..+...+.. ++
T Consensus 126 ~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~ 204 (268)
T 2r62_A 126 SGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-ND 204 (268)
T ss_dssp --CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SS
T ss_pred CCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-Cc
Confidence 2345666666542 236677788888888889988 65 479999999999999999887644332 22
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC
Q 017844 212 GFATRLAEKSNR-SLRRAILSFETCRVQQY 240 (365)
Q Consensus 212 ~~~~~i~~~~~g-~lr~ai~~l~~~~~~~~ 240 (365)
..++.+++.+.| +.|++.++++.++..+.
T Consensus 205 ~~~~~la~~~~g~~g~dl~~l~~~a~~~a~ 234 (268)
T 2r62_A 205 VNLQEVAKLTAGLAGADLANIINEAALLAG 234 (268)
T ss_dssp CCTTTTTSSSCSSCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 336667777776 45677778887766553
No 65
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.68 E-value=4.7e-16 Score=148.85 Aligned_cols=197 Identities=18% Similarity=0.288 Sum_probs=129.0
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHc-----------CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
|.++ .+.+|++++|+++++..+++.+.. .+.+. ++|+|||||||||+++++++.+. .+.+.+++
T Consensus 22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~---~~~i~i~g 97 (499)
T 2dhr_A 22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG 97 (499)
T ss_dssp ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeh
Confidence 4444 677999999999998888776542 12333 99999999999999999999753 23333433
Q ss_pred ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------
Q 017844 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------ 144 (365)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------ 144 (365)
..+ ... ..+ .....+..+.+.. ....+.+++|||++.+..
T Consensus 98 ~~~---------------------~~~---~~g-----~~~~~v~~lfq~a-----~~~~p~il~IDEId~l~~~r~~~~ 143 (499)
T 2dhr_A 98 SDF---------------------VEM---FVG-----VGAARVRDLFETA-----KRHAPCIVFIDEIDAVGRKRGSGV 143 (499)
T ss_dssp GGG---------------------TSS---CTT-----HHHHHHHHHTTTS-----SSSSSCEEEEECGGGTCCCSSSST
T ss_pred hHH---------------------HHh---hhh-----hHHHHHHHHHHHH-----HhcCCCEEEEehHHHHHHhhccCc
Confidence 222 000 001 0111222222111 112357999999987631
Q ss_pred --------HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844 145 --------EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (365)
Q Consensus 145 --------~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~ 211 (365)
...+.|+..|+... ..+.++.++|.++.+++++.+++ ..+.++.|+.+++.++++.++. +..+++
T Consensus 144 ~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~ 221 (499)
T 2dhr_A 144 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAE 221 (499)
T ss_dssp TTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCC
T ss_pred CCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCCh
Confidence 23345555555332 23556666777777888998854 3899999999999999987654 445554
Q ss_pred HH-HHHHHHHcCCCH-HHHHHHHHHHHhcC
Q 017844 212 GF-ATRLAEKSNRSL-RRAILSFETCRVQQ 239 (365)
Q Consensus 212 ~~-~~~i~~~~~g~l-r~ai~~l~~~~~~~ 239 (365)
++ +..++..+.|+. |++.++++.++..+
T Consensus 222 dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A 251 (499)
T 2dhr_A 222 DVDLALLAKRTPGFVGADLENLLNEAALLA 251 (499)
T ss_dssp SSTTHHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 44 888999999987 88888888776553
No 66
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.68 E-value=3e-16 Score=150.48 Aligned_cols=195 Identities=17% Similarity=0.230 Sum_probs=132.1
Q ss_pred ccCCCCCCccccCHHHHHHHHHHHHc------------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844 6 KYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (365)
Q Consensus 6 k~rP~~~~~iig~~~~~~~l~~~l~~------------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~ 72 (365)
.+++.+|++++|++.+++.++.++.. ...+ ++||+||||||||++|+++++++.. ..+.++|..
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~---~fv~vn~~~ 273 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPE 273 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS---EEEEEEHHH
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC---CEEEEEchH
Confidence 45677899999999999999888753 1333 4999999999999999999987521 122232221
Q ss_pred ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------
Q 017844 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------- 143 (365)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--------- 143 (365)
+ . +.........++..+..... ..+.+++|||+|.+.
T Consensus 274 l----------------~---------~~~~g~~~~~~~~~f~~A~~---------~~p~iLfLDEId~l~~~~~~~~~~ 319 (489)
T 3hu3_A 274 I----------------M---------SKLAGESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGE 319 (489)
T ss_dssp H----------------H---------TSCTTHHHHHHHHHHHHHHH---------TCSEEEEEESHHHHCBCTTSCCCH
T ss_pred h----------------h---------hhhcchhHHHHHHHHHHHHh---------cCCcEEEecchhhhccccccccch
Confidence 1 0 00011111123344444332 234799999997654
Q ss_pred --HHHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017844 144 --REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216 (365)
Q Consensus 144 --~~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~ 216 (365)
...++.|+..|+.. ..++.+|.+||.++.+++++++ |+. .+.|+.|+.++..++|+.++...... .+..+..
T Consensus 320 ~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~ 398 (489)
T 3hu3_A 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQ 398 (489)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHH
T ss_pred HHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHH
Confidence 25678899999864 3467888889998889999998 553 79999999999999999887655443 2334677
Q ss_pred HHHHcCCC-HHHHHHHHHHHHhc
Q 017844 217 LAEKSNRS-LRRAILSFETCRVQ 238 (365)
Q Consensus 217 i~~~~~g~-lr~ai~~l~~~~~~ 238 (365)
++..+.|. .+...++++.++..
T Consensus 399 la~~t~g~s~~dL~~L~~~A~~~ 421 (489)
T 3hu3_A 399 VANETHGHVGADLAALCSEAALQ 421 (489)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHHH
Confidence 88887774 44444455554433
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.68 E-value=1.5e-16 Score=163.43 Aligned_cols=201 Identities=16% Similarity=0.283 Sum_probs=136.7
Q ss_pred CccccCHHHHHHHHHHHHcCC--------C-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844 13 DQVIVHQDIAQNLKKLVTEQD--------C-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~~--------~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (365)
++++|++.+++.+...+.... . .+++|+||+|||||++|+++++.+.+.....+.+++..+ . +
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~-~-------~ 629 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY-M-------E 629 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC-C-------S
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc-c-------c
Confidence 467999999988888876421 1 249999999999999999999988776555556665443 0 0
Q ss_pred ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (365)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----- 158 (365)
. ......+...+...+... ...+...+.. . .+.|++|||++.++++.++.|++.|++..
T Consensus 630 ~----~~~s~l~g~~~~~~G~~~---~g~l~~~~~~-~--------~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~ 693 (854)
T 1qvr_A 630 K----HAVSRLIGAPPGYVGYEE---GGQLTEAVRR-R--------PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH 693 (854)
T ss_dssp S----GGGGGC-----------------CHHHHHHH-C--------SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSS
T ss_pred h----hHHHHHcCCCCCCcCccc---cchHHHHHHh-C--------CCeEEEEecccccCHHHHHHHHHHhccCceECCC
Confidence 0 000000110010011111 0112222222 1 24799999999999999999999999753
Q ss_pred ------CceeEEEEecCC--------------------------CcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHH-
Q 017844 159 ------ASCRLILCCNSS--------------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK- 204 (365)
Q Consensus 159 ------~~~~~Il~t~~~--------------------------~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~- 204 (365)
.++.+|++||.. ..+.+.+.+|| .++.|.|++.+++..++...+.+
T Consensus 694 g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 694 GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL 773 (854)
T ss_dssp SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence 355688888752 13567889999 68899999999999998877653
Q ss_pred ------c--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 017844 205 ------E--GLQLPSGFATRLAEKS---NRSLRRAILSFETCRV 237 (365)
Q Consensus 205 ------~--~~~i~~~~~~~i~~~~---~g~lr~ai~~l~~~~~ 237 (365)
. .+.+++++++.|++.+ .|++|.+.+.++.+..
T Consensus 774 ~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 774 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 1 2468999999999965 4999999999887543
No 68
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.68 E-value=5.5e-16 Score=153.29 Aligned_cols=233 Identities=18% Similarity=0.186 Sum_probs=141.1
Q ss_pred ccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce-------ec
Q 017844 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK-------ID 76 (365)
Q Consensus 4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~-------~~ 76 (365)
-.+|||++|++++|++.+++.+...+..+. +++|+||||+||||+++++++.+.+...+.+.+.+.... ..
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred cccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 468999999999999999999999998885 499999999999999999999665444344433332210 00
Q ss_pred CCCccee-------------------ccccccccccceec-CCCCcC----ccchhHHHHHHHHHHhc----CCC-----
Q 017844 77 AGSRNID-------------------LELTTLSSANHVEL-SPSDAG----FQDRYVVQEVIKEMAKN----RPI----- 123 (365)
Q Consensus 77 ~~~~~~~-------------------~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~----~~~----- 123 (365)
|.+.... ..+........+.+ .....+ ........+++..+... ...
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 0000000 00000000000000 000000 00000111221110000 000
Q ss_pred -----CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------------------cCceeEEEEecCC--CcccH
Q 017844 124 -----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------------------SASCRLILCCNSS--SKVTE 175 (365)
Q Consensus 124 -----~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---------------------~~~~~~Il~t~~~--~~l~~ 175 (365)
+.....+..+++|||++.|++..++.|++.|++. +.++++|+++|.. ..+.+
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 0000123469999999999999999999999842 2356788888876 47899
Q ss_pred HHhccce----eEEecC---CCHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc---CC-------CHHHHHHHHH
Q 017844 176 AIRSRCL----NIRINS---PTEEQIVKVLEFIAKKE-----GLQLPSGFATRLAEKS---NR-------SLRRAILSFE 233 (365)
Q Consensus 176 ~l~sR~~----~i~~~~---~~~~~~~~iL~~~~~~~-----~~~i~~~~~~~i~~~~---~g-------~lr~ai~~l~ 233 (365)
++++||. .+.|+. -..+.+..++..+++.. ...++++++..+++.+ .| ++|.+.++++
T Consensus 270 ~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr 349 (604)
T 3k1j_A 270 ALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR 349 (604)
T ss_dssp HHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHH
T ss_pred HHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHH
Confidence 9999994 566543 25566777776555432 2578999999999854 56 6999999998
Q ss_pred HHHhc
Q 017844 234 TCRVQ 238 (365)
Q Consensus 234 ~~~~~ 238 (365)
.+...
T Consensus 350 ~A~~~ 354 (604)
T 3k1j_A 350 AAGDI 354 (604)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 69
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.67 E-value=7.9e-16 Score=137.27 Aligned_cols=184 Identities=15% Similarity=0.235 Sum_probs=113.8
Q ss_pred CccccCHHHHHHHHH-------HHHc--CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844 13 DQVIVHQDIAQNLKK-------LVTE--QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (365)
Q Consensus 13 ~~iig~~~~~~~l~~-------~l~~--~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~ 82 (365)
..++|+....+.+.. .+.. ... ++++|+||+|||||++|+++++.+.++ .+.+++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~---~~~i~~~----------- 98 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP---FIKICSP----------- 98 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS---EEEEECG-----------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC---EEEEeCH-----------
Confidence 457777655443333 3431 222 349999999999999999999975322 1111110
Q ss_pred eccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC----------CHHHHHHHHH
Q 017844 83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL----------SREAQHSLRR 152 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L----------~~~~~~~Ll~ 152 (365)
. .+.. .........++..+.... ..++.+++|||++.+ ....++.|..
T Consensus 99 ----------~--~~~g-~~~~~~~~~~~~~~~~~~---------~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~ 156 (272)
T 1d2n_A 99 ----------D--KMIG-FSETAKCQAMKKIFDDAY---------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLV 156 (272)
T ss_dssp ----------G--GCTT-CCHHHHHHHHHHHHHHHH---------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHH
T ss_pred ----------H--HhcC-CchHHHHHHHHHHHHHHH---------hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHH
Confidence 0 0000 000000012333333322 134589999999876 4455566666
Q ss_pred HHhh---hcCceeEEEEecCCCcccH-HHhccc-eeEEecCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC---
Q 017844 153 TMEK---YSASCRLILCCNSSSKVTE-AIRSRC-LNIRINSPTE-EQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR--- 223 (365)
Q Consensus 153 ~le~---~~~~~~~Il~t~~~~~l~~-~l~sR~-~~i~~~~~~~-~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g--- 223 (365)
.++. ....+.+|.+||.++.+.+ .+++|+ ..+.+++++. +++..++.+. ..++++.+..+++.+.|
T Consensus 157 ~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~-----~~~~~~~~~~l~~~~~g~~~ 231 (272)
T 1d2n_A 157 LLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL-----GNFKDKERTTIAQQVKGKKV 231 (272)
T ss_dssp HTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH-----TCSCHHHHHHHHHHHTTSEE
T ss_pred HhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc-----CCCCHHHHHHHHHHhcCCCc
Confidence 6654 2234556666766665655 678885 6889988877 6666666542 24689999999999988
Q ss_pred --CHHHHHHHHHHHHh
Q 017844 224 --SLRRAILSFETCRV 237 (365)
Q Consensus 224 --~lr~ai~~l~~~~~ 237 (365)
++|+++++++.+..
T Consensus 232 ~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 232 WIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp EECHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHhh
Confidence 99999999998854
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.65 E-value=2e-15 Score=133.30 Aligned_cols=197 Identities=18% Similarity=0.281 Sum_probs=124.5
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
+...+++.+|++++|+++++..++..... -..+ .++|+||||+||||+++++++.+. .+.+.+++
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~ 82 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG 82 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeeH
Confidence 34567778999999999888777665431 1223 399999999999999999999653 22333333
Q ss_pred ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-------
Q 017844 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------- 143 (365)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------- 143 (365)
..+ .... .+ .....+...+.... ...+.++++||++.+.
T Consensus 83 ~~~---------------------~~~~---~~-~~~~~i~~~~~~~~---------~~~~~i~~~Deid~l~~~~~~~~ 128 (254)
T 1ixz_A 83 SDF---------------------VEMF---VG-VGAARVRDLFETAK---------RHAPCIVFIDEIDAVGRKRGSGV 128 (254)
T ss_dssp HHH---------------------HHSC---TT-HHHHHHHHHHHHHT---------TSSSEEEEEETHHHHHC------
T ss_pred HHH---------------------HHHH---hh-HHHHHHHHHHHHHH---------hcCCeEEEehhhhhhhcccCccc
Confidence 211 0000 00 00111222222221 1234799999997552
Q ss_pred ----H---HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844 144 ----R---EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (365)
Q Consensus 144 ----~---~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~ 211 (365)
. ...+.++..++... ....++.+++.++.+++++.+ |+ ..+.++.|+.++..++++..+. +..+++
T Consensus 129 ~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~ 206 (254)
T 1ixz_A 129 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAE 206 (254)
T ss_dssp ---CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCT
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCc
Confidence 1 12344555554322 234566677788888999988 44 3799999999999999987764 344444
Q ss_pred HH-HHHHHHHcCCCH-HHHHHHHHHHHhc
Q 017844 212 GF-ATRLAEKSNRSL-RRAILSFETCRVQ 238 (365)
Q Consensus 212 ~~-~~~i~~~~~g~l-r~ai~~l~~~~~~ 238 (365)
++ +..++..+.|.. |++.++++.++..
T Consensus 207 ~~~~~~la~~~~G~~~~dl~~~~~~a~~~ 235 (254)
T 1ixz_A 207 DVDLALLAKRTPGFVGADLENLLNEAALL 235 (254)
T ss_dssp TCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 43 888999998865 7777887766543
No 71
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.62 E-value=2.3e-14 Score=128.13 Aligned_cols=193 Identities=18% Similarity=0.288 Sum_probs=122.0
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844 7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (365)
Q Consensus 7 ~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~ 74 (365)
..+.+|++++|+++++..++..... -..+ +++|+||||+||||+++++++.+. .+.+.+++..+
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~- 109 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDF- 109 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHH-
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHH-
Confidence 3567899999999888777765531 1223 399999999999999999999653 22333333221
Q ss_pred ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------
Q 017844 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----------- 143 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~----------- 143 (365)
.... .+ .....+...+..... ..+.++++||++.+.
T Consensus 110 --------------------~~~~---~~-~~~~~i~~~~~~~~~---------~~~~i~~iDeid~l~~~~~~~~~~~~ 156 (278)
T 1iy2_A 110 --------------------VEMF---VG-VGAARVRDLFETAKR---------HAPCIVFIDEIDAVGRKRGSGVGGGN 156 (278)
T ss_dssp --------------------HHST---TT-HHHHHHHHHHHHHHT---------SCSEEEEEETHHHHHCC--------C
T ss_pred --------------------HHHH---hh-HHHHHHHHHHHHHHh---------cCCcEEehhhhHhhhcccccccCCcc
Confidence 0000 00 001112233333221 134799999997541
Q ss_pred HHHHHHHHHHHhhh---c--CceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-H
Q 017844 144 REAQHSLRRTMEKY---S--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-A 214 (365)
Q Consensus 144 ~~~~~~Ll~~le~~---~--~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~-~ 214 (365)
......+...+.+. . ....++.+++.++.+++++.+ |+ ..+.|+.|+.++..++++..+. +..+++++ +
T Consensus 157 ~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~ 234 (278)
T 1iy2_A 157 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDL 234 (278)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCH
Confidence 12233333333332 1 234566678888889999988 44 3799999999999999997764 34444443 7
Q ss_pred HHHHHHcCCCH-HHHHHHHHHHHhc
Q 017844 215 TRLAEKSNRSL-RRAILSFETCRVQ 238 (365)
Q Consensus 215 ~~i~~~~~g~l-r~ai~~l~~~~~~ 238 (365)
..++..+.|+. |++.++++.++..
T Consensus 235 ~~la~~~~G~~~~dl~~l~~~a~~~ 259 (278)
T 1iy2_A 235 ALLAKRTPGFVGADLENLLNEAALL 259 (278)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 88999999977 6677777766543
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.60 E-value=4.4e-15 Score=148.81 Aligned_cols=176 Identities=17% Similarity=0.259 Sum_probs=119.4
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
.+|+++.|.+++++.|++++.- | ..|. +|||||||||||++|+++|+++..+ .+.+++..+
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~---~~~v~~~~l--- 274 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGPEI--- 274 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE---EEEEEHHHH---
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe---EEEEEhHHh---
Confidence 5799999999888888887631 2 2233 9999999999999999999976321 122222111
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----------H
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E 145 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----------~ 145 (365)
.. .........+++.+.... ...+.||+|||+|.+.+ .
T Consensus 275 ---------------------~s-k~~gese~~lr~lF~~A~---------~~~PsIIfIDEiDal~~~r~~~~~~~~~r 323 (806)
T 3cf2_A 275 ---------------------MS-KLAGESESNLRKAFEEAE---------KNAPAIIFIDELDAIAPKREKTHGEVERR 323 (806)
T ss_dssp ---------------------HS-SCTTHHHHHHHHHHHHHT---------TSCSEEEEEESGGGTCCTTTTCCCTTHHH
T ss_pred ---------------------hc-ccchHHHHHHHHHHHHHH---------HcCCeEEEEehhcccccccCCCCChHHHH
Confidence 00 111111223445554432 23458999999998842 2
Q ss_pred HHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017844 146 AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK 220 (365)
Q Consensus 146 ~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~ 220 (365)
..+.|+..|+... .++.+|.+||+++.+++++++ |+. .|+++.|+.+++.++|+.++.+.... ++..+..+|..
T Consensus 324 iv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~ 402 (806)
T 3cf2_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANE 402 (806)
T ss_dssp HHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHH
T ss_pred HHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHh
Confidence 4556777776542 357788899999999999998 774 89999999999999998776543222 23347778887
Q ss_pred cCC
Q 017844 221 SNR 223 (365)
Q Consensus 221 ~~g 223 (365)
+.|
T Consensus 403 T~G 405 (806)
T 3cf2_A 403 THG 405 (806)
T ss_dssp CCS
T ss_pred cCC
Confidence 765
No 73
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=1.2e-14 Score=137.20 Aligned_cols=214 Identities=14% Similarity=0.210 Sum_probs=130.0
Q ss_pred cccCCCCCCccccCHHHHHHHHHHH-Hc---C---CCCeEEE--ECCCCCcHHHHHHHHHHHhcCC------CCccceec
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLV-TE---Q---DCPHLLF--YGPPGSGKKTLIMALLRQVFGP------GAEKVKVE 69 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l-~~---~---~~~~lll--~Gp~G~GKTtla~~la~~l~~~------~~~~i~~~ 69 (365)
.+|.| ++++|.+..++.+..++ .. + ...+++| +||+|+|||++++.+++.+... ....++++
T Consensus 17 ~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 17 ENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp TTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 34544 67899988888887777 42 3 3344888 9999999999999999876431 11222333
Q ss_pred cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC------
Q 017844 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------ 143 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------ 143 (365)
+... .....+. ..+. ..+.......+.........+...+.. .+++.+++|||++.+.
T Consensus 94 ~~~~-----~~~~~~~-~~l~--~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~llvlDe~~~l~~~~~~~ 157 (412)
T 1w5s_A 94 AFNA-----PNLYTIL-SLIV--RQTGYPIQVRGAPALDILKALVDNLYV--------ENHYLLVILDEFQSMLSSPRIA 157 (412)
T ss_dssp GGGC-----CSHHHHH-HHHH--HHHTCCCCCTTCCHHHHHHHHHHHHHH--------HTCEEEEEEESTHHHHSCTTSC
T ss_pred CCCC-----CCHHHHH-HHHH--HHhCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEeCHHHHhhccCcc
Confidence 2111 0000000 0000 000000000011111111112222211 1345799999998874
Q ss_pred HHHHHHHHHHHhhhc-----CceeEEEEecCCC---ccc---HHHhccc-eeEEecCCCHHHHHHHHHHHHHHcC--CCC
Q 017844 144 REAQHSLRRTMEKYS-----ASCRLILCCNSSS---KVT---EAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG--LQL 209 (365)
Q Consensus 144 ~~~~~~Ll~~le~~~-----~~~~~Il~t~~~~---~l~---~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~--~~i 209 (365)
.+....+++.+++.+ .++.+|++++.+. .+. +.+.+++ ..+.|++++.+++.+++...+...+ ..+
T Consensus 158 ~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~ 237 (412)
T 1w5s_A 158 AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW 237 (412)
T ss_dssp HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC
T ss_pred hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC
Confidence 356666777777654 4567888887654 233 5566665 3599999999999999988776533 357
Q ss_pred CHHHHHHHHHHcC------CCHHHHHHHHHHHHh
Q 017844 210 PSGFATRLAEKSN------RSLRRAILSFETCRV 237 (365)
Q Consensus 210 ~~~~~~~i~~~~~------g~lr~ai~~l~~~~~ 237 (365)
+++++..+++.++ |++|.++.+++.+..
T Consensus 238 ~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~ 271 (412)
T 1w5s_A 238 EPRHLELISDVYGEDKGGDGSARRAIVALKMACE 271 (412)
T ss_dssp CHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence 8999999999999 999999999886543
No 74
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.57 E-value=7.1e-15 Score=136.62 Aligned_cols=193 Identities=21% Similarity=0.266 Sum_probs=121.3
Q ss_pred cccCHHHHHHHHHHHH-------------cC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 15 VIVHQDIAQNLKKLVT-------------EQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 15 iig~~~~~~~l~~~l~-------------~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
++|++.+++.+..++. .. ...+++|+||||||||++|+++++.+..+ .+.+++..+
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~---~~~~~~~~l------ 87 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVP---FTMADATTL------ 87 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHHHH------
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---EEEechHHh------
Confidence 5899999998888873 11 22349999999999999999999976221 111222111
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH--------------
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-------------- 145 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-------------- 145 (365)
..... ........+..+........ ....+.|++|||++.+...
T Consensus 88 ------------------~~~~~---~g~~~~~~~~~~~~~~~~~~-~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~ 145 (363)
T 3hws_A 88 ------------------TEAGY---VGEDVENIIQKLLQKCDYDV-QKAQRGIVYIDQIDKISRKSDNPSITRDVSGEG 145 (363)
T ss_dssp ------------------TTCHH---HHHHHTHHHHHHHHHTTTCH-HHHHHCEEEEECHHHHCCCSSCC---CHHHHHH
T ss_pred ------------------ccccc---ccccHHHHHHHHHHHhhhhH-HhcCCcEEEEeChhhhcccccccccccccchHH
Confidence 00000 00001111222211111000 0123469999999988755
Q ss_pred HHHHHHHHHhhh---------------------cCceeEEEEecCC----------Cc----------------------
Q 017844 146 AQHSLRRTMEKY---------------------SASCRLILCCNSS----------SK---------------------- 172 (365)
Q Consensus 146 ~~~~Ll~~le~~---------------------~~~~~~Il~t~~~----------~~---------------------- 172 (365)
.++.|++.|+.. ..+..||++++.. .+
T Consensus 146 ~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l 225 (363)
T 3hws_A 146 VQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGEL 225 (363)
T ss_dssp HHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHH
T ss_pred HHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHH
Confidence 899999999821 1233455555532 11
Q ss_pred -------------ccHHHhccce-eEEecCCCHHHHHHHHHH----HHH-------HcC--CCCCHHHHHHHHHH---cC
Q 017844 173 -------------VTEAIRSRCL-NIRINSPTEEQIVKVLEF----IAK-------KEG--LQLPSGFATRLAEK---SN 222 (365)
Q Consensus 173 -------------l~~~l~sR~~-~i~~~~~~~~~~~~iL~~----~~~-------~~~--~~i~~~~~~~i~~~---~~ 222 (365)
+.+.+.+|+. ++.|.+|+.+++.+++.. .+. ..+ +.+++++++.|++. .+
T Consensus 226 ~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~ 305 (363)
T 3hws_A 226 LAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARK 305 (363)
T ss_dssp HHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCc
Confidence 6788999996 566999999999888875 222 123 35899999999964 57
Q ss_pred CCHHHHHHHHHHHHhc
Q 017844 223 RSLRRAILSFETCRVQ 238 (365)
Q Consensus 223 g~lr~ai~~l~~~~~~ 238 (365)
++.|.+.+.++.+...
T Consensus 306 ~gaR~L~~~ie~~~~~ 321 (363)
T 3hws_A 306 TGARGLRSIVEAALLD 321 (363)
T ss_dssp CTTTTHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHH
Confidence 7889999988876654
No 75
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.55 E-value=2.3e-13 Score=122.52 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=92.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (365)
++|+||||||||++|+++|+++..+ .+.+++..+ . . .........+++.+..
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~---~i~v~~~~l---------------------~---~-~~~g~~~~~i~~~f~~ 90 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGIN---PIMMSAGEL---------------------E---S-GNAGEPAKLIRQRYRE 90 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCC---CEEEEHHHH---------------------H---C-C---HHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC---EEEEeHHHh---------------------h---h-ccCchhHHHHHHHHHH
Confidence 9999999999999999999987321 222222111 0 0 0001111223344443
Q ss_pred HHhcCCCCCCCCCCceEEEEeCCCCCCH-------------HHHHHHHHHHhh-------------hcCceeEEEEecCC
Q 017844 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------EAQHSLRRTMEK-------------YSASCRLILCCNSS 170 (365)
Q Consensus 117 ~~~~~~~~~~~~~~~~vliiDE~~~L~~-------------~~~~~Ll~~le~-------------~~~~~~~Il~t~~~ 170 (365)
...... ...+.|++|||+|.+.+ ..++.|+..|+. ...++.+|++||.+
T Consensus 91 a~~~~~-----~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~ 165 (293)
T 3t15_A 91 AAEIIR-----KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF 165 (293)
T ss_dssp HHHHHT-----TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC
T ss_pred HHHHHh-----cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc
Confidence 321111 23457999999988754 244788888862 22467899999999
Q ss_pred CcccHHHhc--cceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Q 017844 171 SKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN-RSL 225 (365)
Q Consensus 171 ~~l~~~l~s--R~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~-g~l 225 (365)
+.+++++++ |+..+-+ .|+.++..++++.++...++ +.+.+..+..... .++
T Consensus 166 ~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l 220 (293)
T 3t15_A 166 STLYAPLIRDGRMEKFYW-APTREDRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSI 220 (293)
T ss_dssp CC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCH
T ss_pred ccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHhccCCCC--CHHHHHHHhCCCCcccH
Confidence 999999986 6653333 46999999999988876654 4666666666444 444
No 76
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.54 E-value=9.1e-15 Score=146.55 Aligned_cols=184 Identities=21% Similarity=0.243 Sum_probs=109.9
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------CC-CCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTE-----------QD-CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~-----------~~-~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~ 76 (365)
.+|+++.|.+++++.|++.+.. |. .+. +|||||||||||.+|+++|.++..+ .+.+.+
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~---f~~v~~------ 544 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIKG------ 544 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE---EEECCH------
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc---eEEecc------
Confidence 4789999999999999887641 22 222 9999999999999999999975221 111111
Q ss_pred CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-----------
Q 017844 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----------- 145 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~----------- 145 (365)
...+ . .+.......+++++...... .+.||+|||+|.+...
T Consensus 545 ---------------~~l~---s-~~vGese~~vr~lF~~Ar~~---------~P~IifiDEiDsl~~~R~~~~~~~~~~ 596 (806)
T 3cf2_A 545 ---------------PELL---T-MWFGESEANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIGDGGGA 596 (806)
T ss_dssp ---------------HHHH---T-TTCSSCHHHHHHHHHHHHTT---------CSEEEECSCGGGCC-------------
T ss_pred ---------------chhh---c-cccchHHHHHHHHHHHHHHc---------CCceeechhhhHHhhccCCCCCCCchH
Confidence 1001 0 11112233566777665433 3479999999988421
Q ss_pred ---HHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844 146 ---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (365)
Q Consensus 146 ---~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i 217 (365)
..+.||..|+... .++.+|.+||.++.+++++++ |+. .++|+.|+.+++.++++.++++..+. ++..++.|
T Consensus 597 ~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~l 675 (806)
T 3cf2_A 597 ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFL 675 (806)
T ss_dssp -CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC------
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHH
Confidence 3466788887543 346677789999999999998 884 89999999999999998777554332 22335666
Q ss_pred HHHc----CCCHHHHHHH
Q 017844 218 AEKS----NRSLRRAILS 231 (365)
Q Consensus 218 ~~~~----~g~lr~ai~~ 231 (365)
++.+ +.|+..+.+.
T Consensus 676 a~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 676 AKMTNGFSGADLTEICQR 693 (806)
T ss_dssp ----------CHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHH
Confidence 6654 4466555443
No 77
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.52 E-value=6.3e-14 Score=134.33 Aligned_cols=196 Identities=12% Similarity=0.106 Sum_probs=120.1
Q ss_pred CccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc
Q 017844 13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (365)
..++|++++++.+...+..+. |++|+||||||||++|+++++.+.... ......+. + .+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~~~-~f~~~~~~-~---------------~t~~ 82 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTR-F---------------STPE 82 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSSCC-EEEEECCT-T---------------CCHH
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhhhh-HHHHHHHh-c---------------CCHH
Confidence 357899999998888877664 599999999999999999998652211 00111110 0 0000
Q ss_pred cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---------CceeE
Q 017844 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------ASCRL 163 (365)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---------~~~~~ 163 (365)
..+... .... ... ...+.....- ....+.|++|||++.+++..++.|+..|++.. ....|
T Consensus 83 dL~G~~----~~~~---~~~-~g~~~~~~~g---~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~ 151 (500)
T 3nbx_X 83 EVFGPL----SIQA---LKD-EGRYERLTSG---YLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRL 151 (500)
T ss_dssp HHHCCB----C--------------CBCCTT---SGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCE
T ss_pred HhcCcc----cHHH---Hhh-chhHHhhhcc---CCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhh
Confidence 000000 0000 000 0001000000 00134699999999999999999999998531 12234
Q ss_pred -EEEecCCCc---ccHHHhccce-eEEecCCCH-HHHHHHHHHHH-----------------------HHcCCCCCHHHH
Q 017844 164 -ILCCNSSSK---VTEAIRSRCL-NIRINSPTE-EQIVKVLEFIA-----------------------KKEGLQLPSGFA 214 (365)
Q Consensus 164 -Il~t~~~~~---l~~~l~sR~~-~i~~~~~~~-~~~~~iL~~~~-----------------------~~~~~~i~~~~~ 214 (365)
|++||.... ..+++.+|+. .+.+++|+. ++...++.... ...++.++++++
T Consensus 152 iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~ 231 (500)
T 3nbx_X 152 LVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVF 231 (500)
T ss_dssp EEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHH
T ss_pred hhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHH
Confidence 667765432 5569999985 588899987 56677776532 123677899999
Q ss_pred HHHHHHc----------CCCHHHHHHHHHHHHhc
Q 017844 215 TRLAEKS----------NRSLRRAILSFETCRVQ 238 (365)
Q Consensus 215 ~~i~~~~----------~g~lr~ai~~l~~~~~~ 238 (365)
+++++.. +.+.|.++.++..+.+.
T Consensus 232 e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~ 265 (500)
T 3nbx_X 232 ELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQAS 265 (500)
T ss_dssp HHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHH
Confidence 9998865 55889988877654433
No 78
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.51 E-value=6.1e-14 Score=116.98 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=82.4
Q ss_pred ccccCCCCCCcccc----CHHHHHHHHHHHHcCC---CCeEEEECCCCCcHHHHHHHHHHHhcC-CCCccceecccccee
Q 017844 4 VDKYRPKTLDQVIV----HQDIAQNLKKLVTEQD---CPHLLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKVENKTWKI 75 (365)
Q Consensus 4 ~~k~rP~~~~~iig----~~~~~~~l~~~l~~~~---~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~i~~~~~~~~~ 75 (365)
+++|++.+|+++++ ++.+++.++.++..-. ...++|+||+|+||||+++++++.+.. .....++++...+
T Consensus 1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~-- 78 (180)
T 3ec2_A 1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL-- 78 (180)
T ss_dssp CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH--
T ss_pred CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH--
Confidence 57999999999986 4566777777776532 234999999999999999999997631 1111111111000
Q ss_pred cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC--CCCHHHHHHHHHH
Q 017844 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVD--KLSREAQHSLRRT 153 (365)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~--~L~~~~~~~Ll~~ 153 (365)
............ ..+.+..+ .++++++|||++ .+++..+..|..+
T Consensus 79 -------------------~~~~~~~~~~~~---~~~~~~~~-----------~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 79 -------------------IFRLKHLMDEGK---DTKFLKTV-----------LNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -------------------HHHHHHHHHHTC---CSHHHHHH-----------HTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -------------------HHHHHHHhcCch---HHHHHHHh-----------cCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 000000000000 00111111 135799999997 6788888888888
Q ss_pred Hhhhc-CceeEEEEecCCCc
Q 017844 154 MEKYS-ASCRLILCCNSSSK 172 (365)
Q Consensus 154 le~~~-~~~~~Il~t~~~~~ 172 (365)
+++.. .+..+|++||....
T Consensus 126 l~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHTTCEEEEECCCCSC
T ss_pred HHHHHHcCCCEEEEcCCChh
Confidence 87653 46778888887754
No 79
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.51 E-value=3.4e-13 Score=126.60 Aligned_cols=108 Identities=17% Similarity=0.254 Sum_probs=81.0
Q ss_pred ceEEEEeCCCCCCH------------HHHHHHHHHHhhh----------cCceeEEEEe----cCCCcccHHHhcccee-
Q 017844 131 FKVLVLNEVDKLSR------------EAQHSLRRTMEKY----------SASCRLILCC----NSSSKVTEAIRSRCLN- 183 (365)
Q Consensus 131 ~~vliiDE~~~L~~------------~~~~~Ll~~le~~----------~~~~~~Il~t----~~~~~l~~~l~sR~~~- 183 (365)
..++++||+|.+.. ..|++||+.+|.. ..++.||+++ .++..+.|.+++|+.+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~ 330 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 330 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence 45899999998842 2678999999852 2355677776 2455677999999975
Q ss_pred EEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHH--------cCCCHHHHHHHHHHHHhc
Q 017844 184 IRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEK--------SNRSLRRAILSFETCRVQ 238 (365)
Q Consensus 184 i~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~~~~i~~~--------~~g~lr~ai~~l~~~~~~ 238 (365)
+.|++++.+++.+++.. .+..+|+ .++++++..|++. -++..|.+.+.++.++..
T Consensus 331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~ 406 (444)
T 1g41_A 331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDK 406 (444)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHH
Confidence 99999999999999941 1222344 6899999999985 357888888888876543
No 80
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.50 E-value=1.8e-13 Score=110.00 Aligned_cols=132 Identities=19% Similarity=0.159 Sum_probs=87.3
Q ss_pred ccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccc
Q 017844 14 QVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS 91 (365)
Q Consensus 14 ~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (365)
+++|+...++.+...++. ....+++|+||+|||||++|++++..........+ +++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~------------------ 62 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP------------------ 62 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT------------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC------------------
Confidence 578998888888777653 33345999999999999999999885322221112 222111
Q ss_pred ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.... .....+... ...+++|||++.++...+..|+..|+..+.++++|++||...
T Consensus 63 -----------~~~~--~~~~~~~~a------------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 63 -----------DNAP--QLNDFIALA------------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSL 117 (145)
T ss_dssp -----------TTSS--CHHHHHHHH------------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCH
T ss_pred -----------Ccch--hhhcHHHHc------------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCH
Confidence 0000 111222211 125899999999999999999999987777889999999753
Q ss_pred -------cccHHHhccce--eEEecCC
Q 017844 172 -------KVTEAIRSRCL--NIRINSP 189 (365)
Q Consensus 172 -------~l~~~l~sR~~--~i~~~~~ 189 (365)
.+.+.+..|+. .++++|+
T Consensus 118 ~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 118 VELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp HHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred HHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 35567777764 5666654
No 81
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.1e-12 Score=116.64 Aligned_cols=175 Identities=19% Similarity=0.216 Sum_probs=103.3
Q ss_pred CCCCCCccccCHHHHHHHHHHHH------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLVT------------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l~------------~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~ 74 (365)
...+|+++.|.+++++.++..+. +-..+. ++|+|||||||||+++++++.+.. +.+.+++..+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l- 80 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVKGPEL- 80 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTT-
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHH-
Confidence 45689999999999998887542 112233 999999999999999999996522 2333333211
Q ss_pred ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----------
Q 017844 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------- 144 (365)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~---------- 144 (365)
.. .........++..+..... ..+.++++||++.+..
T Consensus 81 --------------------~~----~~~~~~~~~i~~vf~~a~~---------~~p~i~~~Deid~~~~~r~~~~~~~~ 127 (274)
T 2x8a_A 81 --------------------LN----MYVGESERAVRQVFQRAKN---------SAPCVIFFDEVDALCPRRSDRETGAS 127 (274)
T ss_dssp --------------------CS----STTHHHHHHHHHHHHHHHH---------TCSEEEEEETCTTTCC---------C
T ss_pred --------------------Hh----hhhhHHHHHHHHHHHHHHh---------cCCCeEeeehhhhhhcccCCCcchHH
Confidence 00 0000001123333333211 1247999999987632
Q ss_pred -HHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHc-CCCCC-HHHHHH
Q 017844 145 -EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKE-GLQLP-SGFATR 216 (365)
Q Consensus 145 -~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~-~~~i~-~~~~~~ 216 (365)
...+.++..|... ...+.++.++|+++.+++++++ |+. .+.++.|+.++..++++.+++.. ....+ +..++.
T Consensus 128 ~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~ 207 (274)
T 2x8a_A 128 VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEA 207 (274)
T ss_dssp TTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHH
T ss_pred HHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHH
Confidence 1234455555432 2235567778888889999987 774 89999999999999999877542 22222 223556
Q ss_pred HHH
Q 017844 217 LAE 219 (365)
Q Consensus 217 i~~ 219 (365)
++.
T Consensus 208 la~ 210 (274)
T 2x8a_A 208 IAG 210 (274)
T ss_dssp HHT
T ss_pred HHH
Confidence 665
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=1.9e-13 Score=134.35 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=93.3
Q ss_pred CccccCHHHHHHHHHHHHcCCC-----------CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844 13 DQVIVHQDIAQNLKKLVTEQDC-----------PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~~~~-----------~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~ 81 (365)
..++|++.+++.+..++.++.. .|++|+||||||||++|+++++.+.... +..+...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~----~~~~~~~-------- 362 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAV----YTTGKGS-------- 362 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEE----CCCTTCS--------
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCce----ecCCCcc--------
Confidence 4578999999888777766631 1699999999999999999987542110 0000000
Q ss_pred eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---
Q 017844 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~--- 158 (365)
.. ..+.................. .+ .. ....+++|||++.++++.++.|++.|++..
T Consensus 363 -~~--~~l~~~~~~~~~~g~~~~~~G-----~l---~~---------A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i 422 (595)
T 3f9v_A 363 -TA--AGLTAAVVREKGTGEYYLEAG-----AL---VL---------ADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSI 422 (595)
T ss_dssp -TT--TTSEEECSSGGGTSSCSEEEC-----HH---HH---------HSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEE
T ss_pred -cc--ccccceeeeccccccccccCC-----ee---Ee---------cCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEE
Confidence 00 000000000000000000000 00 00 122699999999999999999999998632
Q ss_pred ----------CceeEEEEecCCC-------------cccHHHhccc-eeEEecCCCHHHHHHHHHHHHH
Q 017844 159 ----------ASCRLILCCNSSS-------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAK 203 (365)
Q Consensus 159 ----------~~~~~Il~t~~~~-------------~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~ 203 (365)
.++.+|.++|... .+++++.||| ..+.+..++.++...+.++++.
T Consensus 423 ~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~ 491 (595)
T 3f9v_A 423 AKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILD 491 (595)
T ss_dssp ESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHT
T ss_pred ecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3455777787664 7889999999 4444444444445555555554
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.42 E-value=3.5e-13 Score=107.99 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=82.1
Q ss_pred ccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccc
Q 017844 14 QVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS 91 (365)
Q Consensus 14 ~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (365)
+++|+...++.+...+.. ....+++|+||+|||||++|++++.... ..+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~----~~~------------------------- 55 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT----PWV------------------------- 55 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS----CEE-------------------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC----CeE-------------------------
Confidence 578998888887777653 3334599999999999999999876431 111
Q ss_pred ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-cCceeEEEEecCC
Q 017844 92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-SASCRLILCCNSS 170 (365)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-~~~~~~Il~t~~~ 170 (365)
.+.+...... .....+. . .+..+++|||++.++.+.+..|++.+++. +.++++|++||..
T Consensus 56 ----~~~~~~~~~~---~~~~~~~---~---------a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 56 ----SPARVEYLID---MPMELLQ---K---------AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp ----CCSSTTHHHH---CHHHHHH---H---------TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred ----EechhhCChH---hhhhHHH---h---------CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 1111110000 0111211 1 11258999999999999999999999876 3568899998865
Q ss_pred C-c----ccHHHhccce--eEEecCC
Q 017844 171 S-K----VTEAIRSRCL--NIRINSP 189 (365)
Q Consensus 171 ~-~----l~~~l~sR~~--~i~~~~~ 189 (365)
. . +.+.+..|+. .+.++|+
T Consensus 117 ~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 117 AGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp TTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred HHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 3 2 4566777764 5666654
No 84
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.40 E-value=7.5e-12 Score=115.14 Aligned_cols=220 Identities=14% Similarity=0.154 Sum_probs=127.8
Q ss_pred CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee----c
Q 017844 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI----D 76 (365)
Q Consensus 1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~----~ 76 (365)
|+|.- ..|..-+.++|.+..++.|..++..+ +.++++||+|+|||++++.+++.. +.+++++..... .
T Consensus 1 ~~F~~-~~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 1 MLFDL-RPKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRELYAERGHI 72 (350)
T ss_dssp CCSCC-SCCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHHHHHTTTCB
T ss_pred CCCCC-CCCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeecccccccCC
Confidence 55533 34456678999999999999999876 459999999999999999998864 133333321100 0
Q ss_pred CCCcceeccccccccc----cc--eecCCCCcCcc-chhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----
Q 017844 77 AGSRNIDLELTTLSSA----NH--VELSPSDAGFQ-DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----- 144 (365)
+...........+... .. +.+........ ......+++..+..... ..++.+++|||++.++.
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~vlvlDe~~~~~~~~~~~ 147 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE-----ELGEFIVAFDEAQYLRFYGSRG 147 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH-----HHSCEEEEEETGGGGGGBTTTT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh-----ccCCEEEEEeCHHHHhccCccc
Confidence 0000000000000000 00 00000000000 00112233333321100 01247999999998764
Q ss_pred --HHHHHHHHHHhhhcCceeEEEEecCCCcc---------cHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844 145 --EAQHSLRRTMEKYSASCRLILCCNSSSKV---------TEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (365)
Q Consensus 145 --~~~~~Ll~~le~~~~~~~~Il~t~~~~~l---------~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~ 212 (365)
+....|...++.. .++.+|++++....+ ..++..|. ..+.+.+++.++..+++...+...|..++++
T Consensus 148 ~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~ 226 (350)
T 2qen_A 148 GKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPEN 226 (350)
T ss_dssp THHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHH
T ss_pred hhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 4444444444443 467888887653211 11233344 4899999999999999998887778889999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 017844 213 FATRLAEKSNRSLRRAILSFET 234 (365)
Q Consensus 213 ~~~~i~~~~~g~lr~ai~~l~~ 234 (365)
.+..+++.++|++.-+..+...
T Consensus 227 ~~~~i~~~tgG~P~~l~~~~~~ 248 (350)
T 2qen_A 227 EIEEAVELLDGIPGWLVVFGVE 248 (350)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999865555443
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.39 E-value=2.3e-12 Score=131.04 Aligned_cols=184 Identities=18% Similarity=0.260 Sum_probs=119.7
Q ss_pred ccCCCCCCccccCHHHHHHHHHHHHc-------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844 6 KYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (365)
Q Consensus 6 k~rP~~~~~iig~~~~~~~l~~~l~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~ 72 (365)
++.+.+|++++|++.+++.++.++.. ....+++|+|||||||||+++++++.+.. ..+.+++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~---~~i~v~~~~ 273 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPE 273 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC---EEEEEEHHH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---cEEEEEchH
Confidence 45567899999999998888887753 12224999999999999999999986521 112222211
Q ss_pred ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------
Q 017844 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------- 144 (365)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-------- 144 (365)
+ .....+ .....++..+...... .+.++++||++.+..
T Consensus 274 l------------------------~~~~~g-~~~~~l~~vf~~a~~~---------~p~il~iDEid~l~~~~~~~~~~ 319 (806)
T 1ypw_A 274 I------------------------MSKLAG-ESESNLRKAFEEAEKN---------APAIIFIDELDAIAPKREKTHGE 319 (806)
T ss_dssp H------------------------SSSSTT-HHHHHHHHHHHHHHHH---------CSEEEEEESGGGTSCTTSCCCSH
T ss_pred h------------------------hhhhhh-hHHHHHHHHHHHHHhc---------CCcEEEeccHHHhhhccccccch
Confidence 1 000001 1111233444443322 347999999987642
Q ss_pred ---HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017844 145 ---EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216 (365)
Q Consensus 145 ---~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~ 216 (365)
...+.|+..++... ..+.+|+++|.++.+.+++++ |+ ..+.+..|+.++..++++..+.+..+. ++..+..
T Consensus 320 ~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~ 398 (806)
T 1ypw_A 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQ 398 (806)
T ss_dssp HHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHH
T ss_pred HHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHH
Confidence 34567777777543 357788888888889998887 77 478999999999999998776543332 2223556
Q ss_pred HHHHcCCCHHH
Q 017844 217 LAEKSNRSLRR 227 (365)
Q Consensus 217 i~~~~~g~lr~ 227 (365)
++..+.|..+.
T Consensus 399 la~~t~g~~g~ 409 (806)
T 1ypw_A 399 VANETHGHVGA 409 (806)
T ss_dssp HHHSCSSCCHH
T ss_pred HHHhhcCcchH
Confidence 66666654433
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.35 E-value=3e-14 Score=144.81 Aligned_cols=161 Identities=22% Similarity=0.272 Sum_probs=107.5
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHc-----------C--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 7 ~rP~~~~~iig~~~~~~~l~~~l~~-----------~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
....+|+++.|.+.+++.+...+.. + ...+++|+||||||||++++++|+.+..+ .+.+++..+
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~---~i~v~~~~l 547 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGPEL 547 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC---CCCCCCSSS
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC---EEEEechHh
Confidence 3445799999999999999887742 1 22249999999999999999999976322 122222111
Q ss_pred eecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC----------
Q 017844 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------- 143 (365)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------- 143 (365)
.. .........++..+....... +.|+++||+|.+.
T Consensus 548 ---------------------~~----~~~g~~~~~i~~~f~~a~~~~---------p~vl~iDEid~l~~~r~~~~~~~ 593 (806)
T 1ypw_A 548 ---------------------LT----MWFGESEANVREIFDKARQAA---------PCVLFFDELDSIAKARGGNIGDG 593 (806)
T ss_dssp ---------------------TT----CCTTTSSHHHHHHHHHHHHHC---------SBCCCCSSHHHHCCTTTTCCSHH
T ss_pred ---------------------hh----hhcCccHHHHHHHHHHHHhcC---------CeEEEEEChhhhhhhccCCCCCc
Confidence 00 000111123455555544322 3699999998762
Q ss_pred ----HHHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHH
Q 017844 144 ----REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKK 204 (365)
Q Consensus 144 ----~~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~ 204 (365)
....+.|+..|+.. ..++.+|++||.++.+++++++ ||. .+.|+.|+.++..++++.++.+
T Consensus 594 ~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp HHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred chhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 12345566666543 3456788889999999999998 985 8999999999999999887654
No 87
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.31 E-value=6.8e-11 Score=109.61 Aligned_cols=201 Identities=16% Similarity=0.171 Sum_probs=124.9
Q ss_pred CccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc
Q 017844 13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (365)
Q Consensus 13 ~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (365)
.+++|+......+...+.. ....+++++|++|+||+++++++...-.... ..+.++|..+ |... .
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~-~fv~vnc~~~---~~~~---------~ 195 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG-AFVDLNCASI---PQEL---------A 195 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS-CEEEEESSSS---CTTT---------H
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccC-CcEEEEcccC---ChHH---------H
Confidence 4578877666655554432 2223399999999999999999987442222 2444554322 0000 0
Q ss_pred cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-----------cC
Q 017844 91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----------SA 159 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-----------~~ 159 (365)
....+.............. ...+. . .+...+++||++.|+...|..|++.|++. +.
T Consensus 196 ~~~lfg~~~g~~tga~~~~-~g~~~---~---------a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 196 ESELFGHEKGAFTGALTRK-KGKLE---L---------ADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHHHHEECSCSSSSCCCCE-ECHHH---H---------TTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred HHHhcCccccccCCccccc-CChHh---h---------cCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceee
Confidence 0000111111000000000 00000 0 12258999999999999999999999863 22
Q ss_pred ceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc
Q 017844 160 SCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS 221 (365)
Q Consensus 160 ~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~~----~~~---~~i~~~~~~~i~~~~ 221 (365)
++++|.+||... .+.+.+..|+. .++++|+.. +++..++.+.+. +.+ ..+++++++.+....
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 567888888653 35567888875 566888766 666666555543 333 458999999999864
Q ss_pred -CCCHHHHHHHHHHHHhcC
Q 017844 222 -NRSLRRAILSFETCRVQQ 239 (365)
Q Consensus 222 -~g~lr~ai~~l~~~~~~~ 239 (365)
.||+|++.|.++.++..+
T Consensus 343 wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 343 WKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CTTHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHHhC
Confidence 999999999999987654
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.29 E-value=1.4e-10 Score=108.35 Aligned_cols=204 Identities=16% Similarity=0.116 Sum_probs=123.5
Q ss_pred CCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844 12 LDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (365)
Q Consensus 12 ~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 89 (365)
+..++|+....+.+...+.. ....+++++|++|+||+++|+.+...........+.++|..+ | + . .
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~---~-----~---~-~ 203 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASI---P-----R---D-I 203 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTS---C-----H---H-H
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCC---C-----H---H-H
Confidence 56788887766666665543 222238999999999999999998743222222333433222 0 0 0 0
Q ss_pred ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-----------c
Q 017844 90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----------S 158 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-----------~ 158 (365)
.....+............. ....+. .....++++||++.|+.+.|..|++.|++. +
T Consensus 204 ~~~elfg~~~g~~tga~~~-~~g~~~------------~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 204 FEAELFGYEKGAFTGAVSS-KEGFFE------------LADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHHHCBCTTSSTTCCSC-BCCHHH------------HTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHHHhcCCCCCCCCCcccc-cCCcee------------eCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 0000011100000000000 000000 012358999999999999999999999863 2
Q ss_pred CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHHH----HcCC---CCCHHHHHHHHHH
Q 017844 159 ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAK----KEGL---QLPSGFATRLAEK 220 (365)
Q Consensus 159 ~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~~----~~~~---~i~~~~~~~i~~~ 220 (365)
.++++|.+||... .+.+.+..|+. .+.++|+.. +++..++...+. +.+. .+++++++.+...
T Consensus 271 ~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~ 350 (387)
T 1ny5_A 271 VNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY 350 (387)
T ss_dssp CCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS
T ss_pred ccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 3577888888643 35667777764 566666643 566655554443 3343 4789999999974
Q ss_pred -cCCCHHHHHHHHHHHHhcCC
Q 017844 221 -SNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 221 -~~g~lr~ai~~l~~~~~~~~ 240 (365)
+.||+|++.+.++.++..+.
T Consensus 351 ~wpGNvreL~~~i~~~~~~~~ 371 (387)
T 1ny5_A 351 PWYGNVRELKNVIERAVLFSE 371 (387)
T ss_dssp CCTTHHHHHHHHHHHHHHHCC
T ss_pred CCCcHHHHHHHHHHHHHHhCC
Confidence 59999999999999877543
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.21 E-value=3.3e-11 Score=96.99 Aligned_cols=119 Identities=19% Similarity=0.366 Sum_probs=74.1
Q ss_pred CCCccc--cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844 11 TLDQVI--VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (365)
Q Consensus 11 ~~~~ii--g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
+|++++ ++..+...+..+ ....++|+||+|+||||+++++++.+.......+++++..+
T Consensus 15 ~~~~f~~g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~--------------- 75 (149)
T 2kjq_A 15 SFDKFLGTENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM--------------- 75 (149)
T ss_dssp CCCCCCSCCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS---------------
T ss_pred chhhcCcCccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh---------------
Confidence 555554 244555555444 33349999999999999999999976432111222222111
Q ss_pred cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc-ee-EEEE
Q 017844 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS-CR-LILC 166 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~-~~-~Il~ 166 (365)
... .+ ..++++++|||++.+....+..|+.+++..... .. +|++
T Consensus 76 --------------~~~----------~~----------~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiit 121 (149)
T 2kjq_A 76 --------------PLT----------DA----------AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLG 121 (149)
T ss_dssp --------------CCC----------GG----------GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred --------------hHH----------HH----------HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 000 00 123479999999998877788888888765332 33 7778
Q ss_pred ecCCCc---ccHHHhccce
Q 017844 167 CNSSSK---VTEAIRSRCL 182 (365)
Q Consensus 167 t~~~~~---l~~~l~sR~~ 182 (365)
++.... ..+.++||+.
T Consensus 122 s~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 122 SEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp ESSCTTTSSCCHHHHHHGG
T ss_pred CCCCHHHccccHHHHHHHh
Confidence 775432 2289999984
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.20 E-value=9.3e-10 Score=101.25 Aligned_cols=211 Identities=12% Similarity=0.153 Sum_probs=121.9
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee---c
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID---L 84 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~---~ 84 (365)
.+...+.++|.+..++.|.. +.. +.++|+||+|+|||++++.+++.+... .+++++............. .
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHHHHH
Confidence 34456789999999999998 765 469999999999999999999876321 2334332110000000000 0
Q ss_pred ccccc--------------ccccceecCCCCcCc----cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--
Q 017844 85 ELTTL--------------SSANHVELSPSDAGF----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-- 144 (365)
Q Consensus 85 ~~~~~--------------~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-- 144 (365)
....+ .....+......... .......+++..+.... . ++.+++|||++.++.
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQAS------K-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTC------S-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcC------C-CCeEEEEECHHHhhccC
Confidence 00000 000000000000000 00112344554444321 1 357999999998753
Q ss_pred --HHHHHHHHHHhhhcCceeEEEEecCCCcc---------cHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844 145 --EAQHSLRRTMEKYSASCRLILCCNSSSKV---------TEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (365)
Q Consensus 145 --~~~~~Ll~~le~~~~~~~~Il~t~~~~~l---------~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~ 212 (365)
+....|....+.. .++.+|++++....+ ..++..|. ..+.+.+++.++..+++...+...+...++.
T Consensus 154 ~~~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~ 232 (357)
T 2fna_A 154 GVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY 232 (357)
T ss_dssp TCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH
T ss_pred chhHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH
Confidence 2333443444432 367888888754211 11244454 6899999999999999998877667766554
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Q 017844 213 FATRLAEKSNRSLRRAILSFETC 235 (365)
Q Consensus 213 ~~~~i~~~~~g~lr~ai~~l~~~ 235 (365)
..+++.++|++.-+..+...+
T Consensus 233 --~~i~~~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 233 --EVVYEKIGGIPGWLTYFGFIY 253 (357)
T ss_dssp --HHHHHHHCSCHHHHHHHHHHH
T ss_pred --HHHHHHhCCCHHHHHHHHHHH
Confidence 889999999998776665554
No 91
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.18 E-value=2.8e-11 Score=102.60 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=44.5
Q ss_pred ccccCCCCCCccccCH----HHHHHHHHHHHcCC----CCeEEEECCCCCcHHHHHHHHHHHhcCC
Q 017844 4 VDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQD----CPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (365)
Q Consensus 4 ~~k~rP~~~~~iig~~----~~~~~l~~~l~~~~----~~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (365)
..+|++.+|+++++.. .+.+.+..++.... ..+++|+||+|+|||++++++++.+...
T Consensus 16 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 16 PREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4567889999999743 35566677776542 1459999999999999999999987543
No 92
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.15 E-value=3.2e-10 Score=98.97 Aligned_cols=136 Identities=15% Similarity=0.236 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcC-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844 21 IAQNLKKLVTEQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (365)
Q Consensus 21 ~~~~l~~~l~~~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (365)
....+..+++.. ... +++|+||||||||++++++|+.+.. .+.+ ++
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l--~G~v-----n~------------------------- 136 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF--YGCV-----NW------------------------- 136 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC--EEEC-----CT-------------------------
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc--ccee-----ec-------------------------
Confidence 345677777654 222 4999999999999999999985310 0000 00
Q ss_pred CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh--------hhc-----CceeEEE
Q 017844 99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME--------KYS-----ASCRLIL 165 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le--------~~~-----~~~~~Il 165 (365)
.... .. ++......+++.||+... .++++.+..+++ ... ....+|+
T Consensus 137 -~~~~-----------------f~--l~~~~~k~i~l~Ee~~~~-~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIi 195 (267)
T 1u0j_A 137 -TNEN-----------------FP--FNDCVDKMVIWWEEGKMT-AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIV 195 (267)
T ss_dssp -TCSS-----------------CT--TGGGSSCSEEEECSCCEE-TTTHHHHHHHHTTCCEEC------CCEECCCCEEE
T ss_pred -cccc-----------------cc--cccccccEEEEeccccch-hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEE
Confidence 0000 00 001123367777777654 456667777776 322 4567999
Q ss_pred EecCCC-----------cccHHHhccceeEEec--------CCCHHHHHHHHHHHHHHcCCCCC
Q 017844 166 CCNSSS-----------KVTEAIRSRCLNIRIN--------SPTEEQIVKVLEFIAKKEGLQLP 210 (365)
Q Consensus 166 ~t~~~~-----------~l~~~l~sR~~~i~~~--------~~~~~~~~~iL~~~~~~~~~~i~ 210 (365)
+||..- ...+.|+|||..++|. +++.+++..++. .++.++.+++
T Consensus 196 tsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~-w~~~~~~~~~ 258 (267)
T 1u0j_A 196 TSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR-WAKDHVVEVE 258 (267)
T ss_dssp EESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH-HHHHTCCCCC
T ss_pred EecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH-HHHHcCCCCc
Confidence 999722 4558899999999999 899999999998 4466766654
No 93
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.11 E-value=4.9e-10 Score=107.11 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=80.0
Q ss_pred CCcccccCCCCCCccc-cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844 1 MLWVDKYRPKTLDQVI-VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (365)
Q Consensus 1 ~~w~~k~rP~~~~~ii-g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~ 79 (365)
.+|+.||||.+|+++- +|..++..+...+..+.. +++|.|++|||||+++..++..+.......+.+ ..|++
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~------~a~T~ 84 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGETGIIL------AAPTH 84 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE------EESSH
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE------ecCcH
Confidence 3799999999999997 788888888888877653 699999999999999999998875543211111 11211
Q ss_pred cceeccccccccccceecCCCCcCccchhHHHHHHHHHHh-------cCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHH
Q 017844 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK-------NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~ 152 (365)
+........ ... ...++...+..... ..........+.+++||||++.++...+..|++
T Consensus 85 ~Aa~~l~~~------~~~--------~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~ 150 (459)
T 3upu_A 85 AAKKILSKL------SGK--------EASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLS 150 (459)
T ss_dssp HHHHHHHHH------HSS--------CEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHH
T ss_pred HHHHHHHhh------hcc--------chhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHH
Confidence 110000000 000 00000010000000 000000122356899999999999988888887
Q ss_pred HHhhhcCceeEEEEecCCC
Q 017844 153 TMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~ 171 (365)
.+. .+..++++.....
T Consensus 151 ~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 151 TIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp HSC---TTCEEEEEECTTS
T ss_pred hcc---CCCEEEEECCHHH
Confidence 775 4667888776544
No 94
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.07 E-value=1.5e-10 Score=99.70 Aligned_cols=132 Identities=15% Similarity=0.144 Sum_probs=73.9
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh--
Q 017844 31 EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-- 108 (365)
Q Consensus 31 ~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (365)
.|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+....... ....+.+.+++.......
T Consensus 29 ~Ge~--~~iiG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~------~~~~i~~v~q~~~l~~~~tv 99 (224)
T 2pcj_A 29 KGEF--VSIIGASGSGKSTLLYILGL-LDAPTEGKVFLEGKEVDYTNEKELSLL------RNRKLGFVFQFHYLIPELTA 99 (224)
T ss_dssp TTCE--EEEEECTTSCHHHHHHHHTT-SSCCSEEEEEETTEECCSSCHHHHHHH------HHHHEEEECSSCCCCTTSCH
T ss_pred CCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCCCCHHHHHHH------HhCcEEEEecCcccCCCCCH
Confidence 4444 88999999999999999998 667888888888755410000000000 001122222211111100
Q ss_pred --------------------HHHHHHHHHHhcC-----CCCCC------------CCCCceEEEEeCC-CCCCHHHHHHH
Q 017844 109 --------------------VVQEVIKEMAKNR-----PIDTK------------GKRGFKVLVLNEV-DKLSREAQHSL 150 (365)
Q Consensus 109 --------------------~~~~~l~~~~~~~-----~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~L 150 (365)
.+.+.++.+.-.. +..+| ...+++++++||+ ..|++.....+
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~ 179 (224)
T 2pcj_A 100 LENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179 (224)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHH
Confidence 1122222211100 00111 2347899999998 78999999999
Q ss_pred HHHHhhhc-CceeEEEEecCCC
Q 017844 151 RRTMEKYS-ASCRLILCCNSSS 171 (365)
Q Consensus 151 l~~le~~~-~~~~~Il~t~~~~ 171 (365)
.+.+.+.. .+..+|++|++.+
T Consensus 180 ~~~l~~l~~~g~tvi~vtHd~~ 201 (224)
T 2pcj_A 180 MDIFLKINEGGTSIVMVTHERE 201 (224)
T ss_dssp HHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHHHHCCCEEEEEcCCHH
Confidence 99988763 3456777776643
No 95
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.05 E-value=1.3e-10 Score=105.00 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=42.3
Q ss_pred cccCCCCCCccccC----HHHHHHHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844 5 DKYRPKTLDQVIVH----QDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 5 ~k~rP~~~~~iig~----~~~~~~l~~~l~~~---~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
..+++.+|+++++. ..+...+..++... ...+++|+||+|+|||+++++++..+.
T Consensus 116 ~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 116 KSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp GGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45677899999863 34556666777652 134599999999999999999999875
No 96
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.04 E-value=3.7e-10 Score=103.38 Aligned_cols=143 Identities=16% Similarity=0.190 Sum_probs=83.7
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhH
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV 109 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (365)
..|.. +.|.||+|+||||+++++++ +..++.|.+.+++.++...+ .. +. . .....+.+.+++.......+
T Consensus 52 ~~Gei--~~IiGpnGaGKSTLlr~i~G-L~~p~~G~I~i~G~~i~~~~-~~--~~--~--~~r~~Ig~v~Q~~~l~~~~T 121 (366)
T 3tui_C 52 PAGQI--YGVIGASGAGKSTLIRCVNL-LERPTEGSVLVDGQELTTLS-ES--EL--T--KARRQIGMIFQHFNLLSSRT 121 (366)
T ss_dssp CTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECSSCC-HH--HH--H--HHHTTEEEECSSCCCCTTSC
T ss_pred cCCCE--EEEEcCCCchHHHHHHHHhc-CCCCCceEEEECCEECCcCC-HH--HH--H--HHhCcEEEEeCCCccCCCCC
Confidence 34444 89999999999999999998 77888899988886551100 00 00 0 00011222222222111111
Q ss_pred ----------------------HHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844 110 ----------------------VQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS 149 (365)
Q Consensus 110 ----------------------~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~ 149 (365)
+.+.++.+.-. .+..+| ...+++++++||+ ..|++..+..
T Consensus 122 V~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~ 201 (366)
T 3tui_C 122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201 (366)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 22222222110 111111 2357899999998 8899999999
Q ss_pred HHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
++++|.+... +..+|++|++.+ ....+.+|+.+
T Consensus 202 i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~v 236 (366)
T 3tui_C 202 ILELLKDINRRLGLTILLITHEMD-VVKRICDCVAV 236 (366)
T ss_dssp HHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 9999987632 566777777654 33455666643
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.04 E-value=5.2e-10 Score=93.28 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCCC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844 20 DIAQNLKKLVTEQDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (365)
..+..++.++++-.. .+++|+||||+||||++.++++.+.+.. +.+.
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i--------------------------------~~fa 90 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV--------------------------------ISFV 90 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE--------------------------------CCCC
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe--------------------------------eeEE
Confidence 345677777764211 2499999999999999999999763210 0000
Q ss_pred CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-HHHHHHHHHHhhhc-------------CceeEE
Q 017844 99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-EAQHSLRRTMEKYS-------------ASCRLI 164 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-~~~~~Ll~~le~~~-------------~~~~~I 164 (365)
.+... . . ..+ ..+.+++++||++.-.. .....+...++..+ ....+|
T Consensus 91 ns~s~-f-------~------l~~-----l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlI 151 (212)
T 1tue_A 91 NSTSH-F-------W------LEP-----LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPIL 151 (212)
T ss_dssp CSSSC-G-------G------GGG-----GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEE
T ss_pred eccch-h-------h------hcc-----cCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEE
Confidence 00000 0 0 001 11347999999973211 11234555555431 124699
Q ss_pred EEecCC---CcccHHHhccceeEEecCC
Q 017844 165 LCCNSS---SKVTEAIRSRCLNIRINSP 189 (365)
Q Consensus 165 l~t~~~---~~l~~~l~sR~~~i~~~~~ 189 (365)
++||.. +...+.|.||+..+.|+.+
T Consensus 152 ITtN~~~~~~~~~~~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 152 LTTNIHPAKDNRWPYLESRITVFEFPNA 179 (212)
T ss_dssp EEESSCTTSSSSCHHHHTSCEEEECCSC
T ss_pred EecCCCcccccchhhhhhhEEEEEcCCC
Confidence 999974 3455789999999998844
No 98
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.03 E-value=2.2e-10 Score=99.43 Aligned_cols=52 Identities=8% Similarity=0.182 Sum_probs=39.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|++.....+++.+.+... +..+|++|++.+ + ..+.+|+.
T Consensus 162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-~-~~~~d~i~ 216 (235)
T 3tif_A 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERII 216 (235)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-H-HTTSSEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-H-HHhCCEEE
Confidence 47899999998 88999999999999987643 567788887765 3 24555554
No 99
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.01 E-value=6.3e-10 Score=97.95 Aligned_cols=137 Identities=14% Similarity=0.198 Sum_probs=77.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch---------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------- 107 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 107 (365)
+.|.||+|+||||+++++++ +..++.|.+.+++..+. .+....... ...+.+.+++......
T Consensus 53 ~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~i~-~~~~~~~~~-------~~~i~~v~Q~~~l~~~~tv~e~l~~ 123 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNL-LEDFDEGEIIIDGINLK-AKDTNLNKV-------REEVGMVFQRFNLFPHMTVLNNITL 123 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEESS-STTCCHHHH-------HHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHc-CCCCCCcEEEECCEECC-CccccHHHH-------hCcEEEEeCCCcCCCCCCHHHHHHH
Confidence 89999999999999999998 66788888888875541 000000000 0011111111111100
Q ss_pred --------------hHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHh
Q 017844 108 --------------YVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (365)
Q Consensus 108 --------------~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le 155 (365)
..+.+.++.+.-. .+..+| ...+++++++||+ ..|++..+..+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~ 203 (263)
T 2olj_A 124 APMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203 (263)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1122222222110 000111 1347899999998 8899999999999988
Q ss_pred hhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 156 KYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 156 ~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+... +..+|++|++.+ ....+.+|+.+
T Consensus 204 ~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 231 (263)
T 2olj_A 204 QLANEGMTMVVVTHEMG-FAREVGDRVLF 231 (263)
T ss_dssp HHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHhCCCEEEEEcCCHH-HHHHhCCEEEE
Confidence 7633 456666666543 33445566543
No 100
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.00 E-value=2.3e-10 Score=100.47 Aligned_cols=132 Identities=17% Similarity=0.252 Sum_probs=75.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch---------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------- 107 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 107 (365)
+.|.||+|+||||+++++++ +..+..+.+.+++... ... .. .. ...+.+.+++......
T Consensus 44 ~~l~G~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~-~~~-~~--~~-------~~~i~~v~q~~~l~~~ltv~enl~~ 111 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIIST-LIKPSSGIVTVFGKNV-VEE-PH--EV-------RKLISYLPEEAGAYRNMQGIEYLRF 111 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEET-TTC-HH--HH-------HTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEC-Ccc-HH--HH-------hhcEEEEcCCCCCCCCCcHHHHHHH
Confidence 89999999999999999998 6678888888877543 100 00 00 0012222221111111
Q ss_pred -------------hHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhh
Q 017844 108 -------------YVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (365)
Q Consensus 108 -------------~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~ 156 (365)
..+.+.++.+.-. .+..+| ...+++++++||+ ..|++.....+.+.|.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 0122222222110 000111 1347899999998 78999999999999887
Q ss_pred hc-CceeEEEEecCCCcccHHHhccc
Q 017844 157 YS-ASCRLILCCNSSSKVTEAIRSRC 181 (365)
Q Consensus 157 ~~-~~~~~Il~t~~~~~l~~~l~sR~ 181 (365)
.. .+..+|++|++.+. ...+.+|+
T Consensus 192 l~~~g~tiiivtHd~~~-~~~~~d~v 216 (256)
T 1vpl_A 192 ASQEGLTILVSSHNMLE-VEFLCDRI 216 (256)
T ss_dssp HHHTTCEEEEEECCHHH-HTTTCSEE
T ss_pred HHhCCCEEEEEcCCHHH-HHHHCCEE
Confidence 64 34567777765442 23334454
No 101
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.97 E-value=5.4e-10 Score=98.28 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=39.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+.+ ..+.+|+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~-~~~~d~v~ 224 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV-LNYIDHLY 224 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT-GGGCSEEE
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH-HHhCCEEE
Confidence 47899999998 88999999999999887643 56677777776543 34556653
No 102
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.96 E-value=5.1e-10 Score=99.15 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=81.1
Q ss_pred HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc------
Q 017844 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA------ 102 (365)
Q Consensus 29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 102 (365)
+..|.. +.|.||+|+||||+++++++ +..+..|.+.+++..+ .......... ...+.+.+++.
T Consensus 31 i~~Ge~--~~iiGpnGsGKSTLl~~l~G-l~~p~~G~I~~~G~~i-~~~~~~~~~~-------~~~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 31 IKRGEV--TAILGGNGVGKSTLFQNFNG-ILKPSSGRILFDNKPI-DYSRKGIMKL-------RESIGIVFQDPDNQLFS 99 (275)
T ss_dssp EETTSE--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEEC-CCSHHHHHHH-------HHSEEEECSSGGGTCCS
T ss_pred EcCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCCeEEEECCEEC-CcccccHHHH-------hCcEEEEEcCccccccc
Confidence 334554 89999999999999999998 6688888888887654 1000000000 00111111110
Q ss_pred --------------Cccch---hHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHH
Q 017844 103 --------------GFQDR---YVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQ 147 (365)
Q Consensus 103 --------------~~~~~---~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~ 147 (365)
+.... ..+.+.++.+.-. .+..+| ...+++++|+||+ ..|++..+
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~ 179 (275)
T 3gfo_A 100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179 (275)
T ss_dssp SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 10000 0122222221100 001111 1347899999998 78999999
Q ss_pred HHHHHHHhhhc-C-ceeEEEEecCCCcccHHHhcccee
Q 017844 148 HSLRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 148 ~~Ll~~le~~~-~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
..+++.+.+.. . +..+|++|++.+.+ ..+.+|+.+
T Consensus 180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~-~~~~drv~~ 216 (275)
T 3gfo_A 180 SEIMKLLVEMQKELGITIIIATHDIDIV-PLYCDNVFV 216 (275)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCCSSG-GGGCSEEEE
T ss_pred HHHHHHHHHHHhhCCCEEEEEecCHHHH-HHhCCEEEE
Confidence 99999988764 2 56677777776643 445666543
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.96 E-value=4.9e-09 Score=86.79 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=51.7
Q ss_pred CceEEEEeC--C-CCCCHHHHHHHHHHHhhhcCceeEEEEec--CCCcccHHHhcc--ceeEEecCCCHHHHHHHHH
Q 017844 130 GFKVLVLNE--V-DKLSREAQHSLRRTMEKYSASCRLILCCN--SSSKVTEAIRSR--CLNIRINSPTEEQIVKVLE 199 (365)
Q Consensus 130 ~~~vliiDE--~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~--~~~~l~~~l~sR--~~~i~~~~~~~~~~~~iL~ 199 (365)
+++++++|| + ..+++..++.+.+.+++. ...+|++++ +...+...+.+| +.++.+.+.+.+++...+.
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 458999999 4 567888999999999873 444677774 555677888888 7889998888766655543
No 104
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.95 E-value=6.7e-10 Score=102.35 Aligned_cols=137 Identities=15% Similarity=0.233 Sum_probs=81.9
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhH
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV 109 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (365)
..|.. +.|.||+|+||||++++|++ +..++.|.+.+++..+...+.. ...+.+..++...+...+
T Consensus 27 ~~Ge~--~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~~~~~~~~------------~r~ig~VfQ~~~l~p~lt 91 (381)
T 3rlf_A 27 HEGEF--VVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPA------------ERGVGMVFQSYALYPHLS 91 (381)
T ss_dssp CTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTCCGG------------GSCEEEECTTCCCCTTSC
T ss_pred CCCCE--EEEEcCCCchHHHHHHHHHc-CCCCCCeEEEECCEECCCCCHH------------HCCEEEEecCCcCCCCCC
Confidence 34444 89999999999999999999 7788889999888665111110 011222222222111111
Q ss_pred HH------------------HHHHHHHhcCCC---------CCCC------------CCCceEEEEeCC-CCCCHHHHHH
Q 017844 110 VQ------------------EVIKEMAKNRPI---------DTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (365)
Q Consensus 110 ~~------------------~~l~~~~~~~~~---------~~~~------------~~~~~vliiDE~-~~L~~~~~~~ 149 (365)
+. +...++.....+ .+|+ ..+++++++||+ ..|+...+..
T Consensus 92 V~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~ 171 (381)
T 3rlf_A 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 171 (381)
T ss_dssp HHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 11 111222111111 1121 126889999998 8899999988
Q ss_pred HHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
+++.|.+... +..+|++|++.+. ...+.+|+.
T Consensus 172 l~~~l~~l~~~~g~tii~vTHd~~e-a~~~aDri~ 205 (381)
T 3rlf_A 172 MRIEISRLHKRLGRTMIYVTHDQVE-AMTLADKIV 205 (381)
T ss_dssp HHHHHHHHHHHHCCEEEEECSCHHH-HHHHCSEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHH-HHHhCCEEE
Confidence 8888877632 5677777776553 234566654
No 105
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.94 E-value=1.2e-09 Score=99.99 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=80.7
Q ss_pred HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch-
Q 017844 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR- 107 (365)
Q Consensus 29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 107 (365)
+..|.. +.|.||+|+||||++++|++ +..++.+.+.+++..+...+.. ...+.+..++......
T Consensus 38 i~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~------------~r~ig~v~Q~~~l~~~l 102 (355)
T 1z47_A 38 IREGEM--VGLLGPSGSGKTTILRLIAG-LERPTKGDVWIGGKRVTDLPPQ------------KRNVGLVFQNYALFQHM 102 (355)
T ss_dssp EETTCE--EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTCCGG------------GSSEEEECGGGCCCTTS
T ss_pred ECCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECCcCChh------------hCcEEEEecCcccCCCC
Confidence 344555 89999999999999999998 6788888888888654111100 0111222221111111
Q ss_pred ---------------------hHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844 108 ---------------------YVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQH 148 (365)
Q Consensus 108 ---------------------~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~ 148 (365)
..+.+.++.+.-. .+..+| ...+++++++||+ ..|+.....
T Consensus 103 tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~ 182 (355)
T 1z47_A 103 TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRR 182 (355)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1122222221100 011111 1347899999998 889999999
Q ss_pred HHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 149 ~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+.+.|.+... +..+|++|++.+. ...+.+|+.
T Consensus 183 ~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~ 217 (355)
T 1z47_A 183 ELRTFVRQVHDEMGVTSVFVTHDQEE-ALEVADRVL 217 (355)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEE
T ss_pred HHHHHHHHHHHhcCCEEEEECCCHHH-HHHhCCEEE
Confidence 88888877532 4667777776543 234556654
No 106
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.93 E-value=9.2e-10 Score=93.83 Aligned_cols=139 Identities=12% Similarity=0.159 Sum_probs=75.2
Q ss_pred HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc------cccccccceecCCCCc
Q 017844 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL------TTLSSANHVELSPSDA 102 (365)
Q Consensus 29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 102 (365)
+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..+. +......+.. ...+..+.+.+.....
T Consensus 32 i~~Ge~--~~iiG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 106 (214)
T 1sgw_A 32 IEKGNV--VNFHGPNGIGKTTLLKTIST-YLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY 106 (214)
T ss_dssp EETTCC--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT
T ss_pred EcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc
Confidence 344555 89999999999999999998 66788888888775431 0000000000 0000000000000000
Q ss_pred C-ccchhHHHHHHHHHHhcC----CCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeE
Q 017844 103 G-FQDRYVVQEVIKEMAKNR----PIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRL 163 (365)
Q Consensus 103 ~-~~~~~~~~~~l~~~~~~~----~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~ 163 (365)
+ ......+.+.++.+.-.. +..+| ...+++++++||+ ..|++.....+.+.+.+.. .+..+
T Consensus 107 ~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~ti 186 (214)
T 1sgw_A 107 GVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186 (214)
T ss_dssp TCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEE
T ss_pred CCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 0 001112333333321110 00111 1347899999998 7899888888888887754 24567
Q ss_pred EEEecCCCc
Q 017844 164 ILCCNSSSK 172 (365)
Q Consensus 164 Il~t~~~~~ 172 (365)
|++|++.+.
T Consensus 187 iivtHd~~~ 195 (214)
T 1sgw_A 187 IISSREELS 195 (214)
T ss_dssp EEEESSCCT
T ss_pred EEEeCCHHH
Confidence 777777653
No 107
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.92 E-value=1.3e-09 Score=100.03 Aligned_cols=148 Identities=14% Similarity=0.275 Sum_probs=81.2
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccccc------cccccceecCCCCcC
Q 017844 31 EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT------LSSANHVELSPSDAG 103 (365)
Q Consensus 31 ~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~ 103 (365)
.|.. +.|.||+|+||||+++++++ +..++.+.+.+++..+...+. .+...+.+.. ++..+.+.+.....+
T Consensus 28 ~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 104 (359)
T 2yyz_A 28 DGEF--VALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR 104 (359)
T ss_dssp TTCE--EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSC
T ss_pred CCCE--EEEEcCCCchHHHHHHHHHC-CCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 4444 88999999999999999999 678888989888865411111 0111110000 000001111100000
Q ss_pred ccc---hhHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--c
Q 017844 104 FQD---RYVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--S 160 (365)
Q Consensus 104 ~~~---~~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~ 160 (365)
... ...+.+.++.+.-. .+..+| ...+++++++||+ ..|+......+.+.+.+... +
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (359)
T 2yyz_A 105 ISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG 184 (359)
T ss_dssp SHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 000 11233333332110 111111 1347899999998 88999999988888877532 5
Q ss_pred eeEEEEecCCCcccHHHhccce
Q 017844 161 CRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
..+|++|++.+.. ..+.+|+.
T Consensus 185 ~tvi~vTHd~~~~-~~~adri~ 205 (359)
T 2yyz_A 185 ITSVYVTHDQAEA-MTMASRIA 205 (359)
T ss_dssp CEEEEEESCHHHH-HHHCSEEE
T ss_pred CEEEEEcCCHHHH-HHhCCEEE
Confidence 6778888775532 34556654
No 108
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.92 E-value=8.8e-10 Score=95.93 Aligned_cols=148 Identities=11% Similarity=0.091 Sum_probs=80.0
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC----cceecccc------ccccccceecCCC
Q 017844 31 EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELT------TLSSANHVELSPS 100 (365)
Q Consensus 31 ~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~ 100 (365)
.|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+.. ....+.+. ..+..+.+.+...
T Consensus 31 ~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 107 (240)
T 1ji0_A 31 RGQI--VTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp TTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred CCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence 4444 89999999999999999998 6678888888887544100000 00000000 0000011111100
Q ss_pred CcCccc--hhHHHHHHHHHH-hc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-
Q 017844 101 DAGFQD--RYVVQEVIKEMA-KN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS- 158 (365)
Q Consensus 101 ~~~~~~--~~~~~~~l~~~~-~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~- 158 (365)
...... ...+.+.++.+. -. .+..+| ...+++++++||+ ..|++.....+.+.+.+..
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~ 187 (240)
T 1ji0_A 108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 000011 112233333221 11 111122 1347899999998 7899999999999988764
Q ss_pred CceeEEEEecCCCcccHHHhccce
Q 017844 159 ASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 159 ~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+..+|++|++.+. ...+.+|+.
T Consensus 188 ~g~tvi~vtHd~~~-~~~~~d~v~ 210 (240)
T 1ji0_A 188 EGTTILLVEQNALG-ALKVAHYGY 210 (240)
T ss_dssp TTCCEEEEESCHHH-HHHHCSEEE
T ss_pred CCCEEEEEecCHHH-HHHhCCEEE
Confidence 35667777776542 234555543
No 109
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.92 E-value=8.2e-10 Score=95.98 Aligned_cols=145 Identities=12% Similarity=0.179 Sum_probs=77.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccccc------cccccceecCCCCcCcc-ch
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT------LSSANHVELSPSDAGFQ-DR 107 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~ 107 (365)
.+.|.||+|+||||+++++++ +..++.|.+.+++..+...+. .....+.+.. .+..+.+.+.....+.. ..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 104 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG-IVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence 388999999999999999998 667888888888755411000 0000000000 00000011110000000 00
Q ss_pred hHHHHHHHHHHhcC-----CCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEe
Q 017844 108 YVVQEVIKEMAKNR-----PIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCC 167 (365)
Q Consensus 108 ~~~~~~l~~~~~~~-----~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t 167 (365)
..+.+.++.+.-.. +..+| ...+++++++||+ ..|++.....+.+.+.+... +..+|++|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt 184 (240)
T 2onk_A 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 11222222211100 00111 1347899999998 88999999999999987632 45677777
Q ss_pred cCCCcccHHHhccce
Q 017844 168 NSSSKVTEAIRSRCL 182 (365)
Q Consensus 168 ~~~~~l~~~l~sR~~ 182 (365)
++.+. ...+.+|+.
T Consensus 185 Hd~~~-~~~~~d~i~ 198 (240)
T 2onk_A 185 HDLIE-AAMLADEVA 198 (240)
T ss_dssp SCHHH-HHHHCSEEE
T ss_pred CCHHH-HHHhCCEEE
Confidence 76543 234555554
No 110
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.92 E-value=1.3e-09 Score=99.66 Aligned_cols=148 Identities=14% Similarity=0.213 Sum_probs=80.6
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC------CCcceecccccc------ccccceec
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA------GSRNIDLELTTL------SSANHVEL 97 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~ 97 (365)
..|.. +.|.||+|+||||++++|++ +..++.|.+.+++..+ ... ..+...+.+... +..+.+.+
T Consensus 28 ~~Ge~--~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~i-~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~ 103 (359)
T 3fvq_A 28 DPGEI--LFIIGASGCGKTTLLRCLAG-FEQPDSGEISLSGKTI-FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAY 103 (359)
T ss_dssp CTTCE--EEEEESTTSSHHHHHHHHHT-SSCCSEEEEEETTEEE-ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHT
T ss_pred cCCCE--EEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEEC-cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHH
Confidence 34544 89999999999999999999 7788889999888665 111 001111100000 00001111
Q ss_pred CCCCcCccc---hhHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhh
Q 017844 98 SPSDAGFQD---RYVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (365)
Q Consensus 98 ~~~~~~~~~---~~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~ 156 (365)
.....+... ...+.+.++.+.-. .+..+| ...+++++++||+ ..|++.....+++.+.+
T Consensus 104 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183 (359)
T ss_dssp TSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 111011111 11233333332211 111122 1347899999998 88999888888765544
Q ss_pred h--cCceeEEEEecCCCcccHHHhccce
Q 017844 157 Y--SASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 157 ~--~~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
. ..+..+|++|++.+. ...+.+|+.
T Consensus 184 ~~~~~g~tvi~vTHd~~e-a~~~aDri~ 210 (359)
T 3fvq_A 184 ALRANGKSAVFVSHDREE-ALQYADRIA 210 (359)
T ss_dssp HHHHTTCEEEEECCCHHH-HHHHCSEEE
T ss_pred HHHhCCCEEEEEeCCHHH-HHHHCCEEE
Confidence 3 235677777777553 234566654
No 111
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.91 E-value=7.5e-10 Score=97.76 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=79.8
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceecccc------ccccccceecCCC
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELT------TLSSANHVELSPS 100 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~~ 100 (365)
..|.. +.|.||+|+||||+++++++ +..++.|.+.+++.++...+... ...+.+. ..+..+.+.+...
T Consensus 35 ~~Ge~--~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 111 (266)
T 4g1u_C 35 ASGEM--VAIIGPNGAGKSTLLRLLTG-YLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRA 111 (266)
T ss_dssp ETTCE--EEEECCTTSCHHHHHHHHTS-SSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGT
T ss_pred cCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhh
Confidence 34544 89999999999999999998 67888898888886541100000 0000000 0000000101000
Q ss_pred CcC-ccchhHHHHHHHHHHhcC-----CCCCC------------CCC------CceEEEEeCC-CCCCHHHHHHHHHHHh
Q 017844 101 DAG-FQDRYVVQEVIKEMAKNR-----PIDTK------------GKR------GFKVLVLNEV-DKLSREAQHSLRRTME 155 (365)
Q Consensus 101 ~~~-~~~~~~~~~~l~~~~~~~-----~~~~~------------~~~------~~~vliiDE~-~~L~~~~~~~Ll~~le 155 (365)
... ......+.+.++.+.-.. +..+| ... +++++++||+ ..|++..+..+++.+.
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~ 191 (266)
T 4g1u_C 112 PYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191 (266)
T ss_dssp TSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 000 001112223333221100 00111 012 7899999998 8899999999999998
Q ss_pred hhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 156 KYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 156 ~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+... +..+|++|++.+ ....+.+|+.+
T Consensus 192 ~l~~~~~~tvi~vtHdl~-~~~~~~d~v~v 220 (266)
T 4g1u_C 192 QLTRQEPLAVCCVLHDLN-LAALYADRIML 220 (266)
T ss_dssp HHHHHSSEEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHcCCCEEEEEEcCHH-HHHHhCCEEEE
Confidence 7643 345666666544 33445666543
No 112
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.91 E-value=1.6e-09 Score=99.46 Aligned_cols=137 Identities=19% Similarity=0.290 Sum_probs=81.0
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhH
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV 109 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (365)
..|.. +.|.||+|+||||++++|++ +..++.+.+.+++..+...+.. ...+.+..++...+...+
T Consensus 27 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~------------~r~ig~v~Q~~~l~~~lt 91 (362)
T 2it1_A 27 KDGEF--MALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTELPPK------------DRNVGLVFQNWALYPHMT 91 (362)
T ss_dssp CTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGG------------GTTEEEECTTCCCCTTSC
T ss_pred CCCCE--EEEECCCCchHHHHHHHHhc-CCCCCceEEEECCEECCcCCHh------------HCcEEEEecCcccCCCCC
Confidence 34444 89999999999999999999 6788888888888654111100 011222222221111111
Q ss_pred ----------------------HHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844 110 ----------------------VQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS 149 (365)
Q Consensus 110 ----------------------~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~ 149 (365)
+.+.++.+.-. .+..+| ...+++++++||+ ..|+......
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 171 (362)
T 2it1_A 92 VYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE 171 (362)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 12222221110 000111 1247899999998 8899999998
Q ss_pred HHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
+.+.|.+... +..+|++|++.+.. ..+.+|+.
T Consensus 172 l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~ 205 (362)
T 2it1_A 172 VRAELKRLQKELGITTVYVTHDQAEA-LAMADRIA 205 (362)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHHH-HHhCCEEE
Confidence 8888877532 56788888775532 34556654
No 113
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.90 E-value=1.6e-09 Score=100.03 Aligned_cols=144 Identities=15% Similarity=0.266 Sum_probs=82.2
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh-
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY- 108 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 108 (365)
..|.. +.|.||+|+||||++++|++ +..++.+.+.+++..+...... ... . .....+.+..++.......
T Consensus 27 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~~~~~~--~~~--~--~~~r~ig~v~Q~~~l~~~lt 97 (372)
T 1g29_1 27 KDGEF--MILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKG--IFV--P--PKDRDIAMVFQSYALYPHMT 97 (372)
T ss_dssp ETTCE--EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEEEGGGT--EEC--C--GGGSSEEEECSCCCCCTTSC
T ss_pred cCCCE--EEEECCCCcHHHHHHHHHHc-CCCCCccEEEECCEECcccccc--ccC--C--HhHCCEEEEeCCCccCCCCC
Confidence 34444 89999999999999999999 6788889998888665110000 000 0 0001122222222111111
Q ss_pred ---------------------HHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CCCCHHHHHH
Q 017844 109 ---------------------VVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (365)
Q Consensus 109 ---------------------~~~~~l~~~~~~-----~~~~~~~------------~~~~~vliiDE~-~~L~~~~~~~ 149 (365)
.+.+.++.+.-. .+..+|+ ..+++++++||+ ..|+......
T Consensus 98 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 177 (372)
T 1g29_1 98 VYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR 177 (372)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence 122223222110 1111121 237899999998 8899999998
Q ss_pred HHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+.+.|.+... +..+|++|++.+. ...+.+|+.+
T Consensus 178 l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~v 212 (372)
T 1g29_1 178 MRAELKKLQRQLGVTTIYVTHDQVE-AMTMGDRIAV 212 (372)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEE
T ss_pred HHHHHHHHHHhcCCEEEEECCCHHH-HHHhCCEEEE
Confidence 8888877532 5678888877553 2345566543
No 114
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.89 E-value=2.1e-09 Score=99.04 Aligned_cols=150 Identities=15% Similarity=0.252 Sum_probs=82.8
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceeccccc------cccccceecCCCCc
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTT------LSSANHVELSPSDA 102 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~ 102 (365)
..|.. +.|.||+|+||||++++|++ +..++.+.+.+++..+...+ ..+...+.+.. ++..+.+.+.....
T Consensus 35 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 111 (372)
T 1v43_A 35 KDGEF--LVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK 111 (372)
T ss_dssp CTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred CCCCE--EEEECCCCChHHHHHHHHHc-CCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 34444 89999999999999999999 67888898988886541111 11111110000 00001111111000
Q ss_pred Cccch---hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--
Q 017844 103 GFQDR---YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-- 159 (365)
Q Consensus 103 ~~~~~---~~~~~~l~~~~~-----~~~~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-- 159 (365)
+.... ..+.+.++.+.- ..+..+|+ ..+++++++||+ ..|+......+++.|.+...
T Consensus 112 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 191 (372)
T 1v43_A 112 KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 191 (372)
T ss_dssp CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 11110 122333333211 11112332 237899999998 88999999988888877532
Q ss_pred ceeEEEEecCCCcccHHHhcccee
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
+..+|++|++.+.. ..+.+|+.+
T Consensus 192 g~tvi~vTHd~~~a-~~~adri~v 214 (372)
T 1v43_A 192 KVTTIYVTHDQVEA-MTMGDRIAV 214 (372)
T ss_dssp TCEEEEEESCHHHH-HHHCSEEEE
T ss_pred CCEEEEEeCCHHHH-HHhCCEEEE
Confidence 46788888775532 345566543
No 115
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.88 E-value=1.2e-09 Score=96.28 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=39.0
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~ 183 (365)
.+++++++||+ ..|++..+..+.+.+.+... +..+|++|++.+ ....+.+|+.+
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIF 225 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEE
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 47899999998 78999999999999887633 456777776644 33445566543
No 116
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.84 E-value=6e-09 Score=90.97 Aligned_cols=137 Identities=20% Similarity=0.245 Sum_probs=76.0
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceecccc---c--cccccceecCCCC
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT---T--LSSANHVELSPSD 101 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~---~--~~~~~~~~~~~~~ 101 (365)
..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......+.. ....+.+. . .+..+.+.+..
T Consensus 33 ~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~-- 107 (247)
T 2ff7_A 33 KQGEV--IGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN-- 107 (247)
T ss_dssp ETTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTC--
T ss_pred cCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccC--
Confidence 34444 89999999999999999998 6678888888887543100000 00000000 0 00000111110
Q ss_pred cCccchhHHHHHHHH-----HHhcCC-----------CCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844 102 AGFQDRYVVQEVIKE-----MAKNRP-----------IDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR 152 (365)
Q Consensus 102 ~~~~~~~~~~~~l~~-----~~~~~~-----------~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~ 152 (365)
.......+.+.++. +....+ ..+| ...+++++++||+ ..|++.....+.+
T Consensus 108 -~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~ 186 (247)
T 2ff7_A 108 -PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186 (247)
T ss_dssp -TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00111122222222 111111 1111 1247899999998 8899999999999
Q ss_pred HHhhhcCceeEEEEecCCCc
Q 017844 153 TMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.+...+..+|++|++...
T Consensus 187 ~l~~~~~g~tviivtH~~~~ 206 (247)
T 2ff7_A 187 NMHKICKGRTVIIIAHRLST 206 (247)
T ss_dssp HHHHHHTTSEEEEECSSGGG
T ss_pred HHHHHcCCCEEEEEeCCHHH
Confidence 98877555677777777553
No 117
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.84 E-value=1.2e-09 Score=100.22 Aligned_cols=149 Identities=17% Similarity=0.271 Sum_probs=80.9
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee-----cCC-Ccceecccccc------ccccceec
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-----DAG-SRNIDLELTTL------SSANHVEL 97 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~-----~~~-~~~~~~~~~~~------~~~~~~~~ 97 (365)
..|.. +.|.||+|+||||++++|++ +..++.|.+.+++..+.. .+. .+...+.+... +..+.+.+
T Consensus 29 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 105 (353)
T 1oxx_K 29 ENGER--FGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF 105 (353)
T ss_dssp CTTCE--EEEECSCHHHHHHHHHHHHT-SSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHG
T ss_pred CCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHH
Confidence 34444 89999999999999999999 678888999888866521 110 01111100000 00000111
Q ss_pred CCCCcCccc---hhHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhh
Q 017844 98 SPSDAGFQD---RYVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (365)
Q Consensus 98 ~~~~~~~~~---~~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~ 156 (365)
.....+... ...+.+.++.+.-. .+..+| ...+++++++||+ ..|+......+++.|.+
T Consensus 106 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 185 (353)
T 1oxx_K 106 PLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185 (353)
T ss_dssp GGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 100001010 11122333322110 111111 1347899999998 88999888888888876
Q ss_pred hcC--ceeEEEEecCCCcccHHHhccce
Q 017844 157 YSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 157 ~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
... +..+|++|++.+.. ..+.+|+.
T Consensus 186 l~~~~g~tvi~vTHd~~~~-~~~adri~ 212 (353)
T 1oxx_K 186 VQSRLGVTLLVVSHDPADI-FAIADRVG 212 (353)
T ss_dssp HHHHHCCEEEEEESCHHHH-HHHCSEEE
T ss_pred HHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence 532 46778888775532 34556654
No 118
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.84 E-value=2.1e-09 Score=98.16 Aligned_cols=137 Identities=12% Similarity=0.231 Sum_probs=81.1
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch--
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR-- 107 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 107 (365)
..|.. +.|.||+|+||||++++|++ +..++.+.+.+++..+...+.. ...+.+..++...+..
T Consensus 24 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~~~~~~------------~r~ig~v~Q~~~l~~~lt 88 (348)
T 3d31_A 24 ESGEY--FVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDVTDLSPE------------KHDIAFVYQNYSLFPHMN 88 (348)
T ss_dssp CTTCE--EEEECCCTHHHHHHHHHHHT-SSCCSEEEEEETTEECTTSCHH------------HHTCEEECTTCCCCTTSC
T ss_pred cCCCE--EEEECCCCccHHHHHHHHHc-CCCCCCcEEEECCEECCCCchh------------hCcEEEEecCcccCCCCC
Confidence 34444 89999999999999999999 6788888888887654100000 0112222222111111
Q ss_pred -----------------hHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844 108 -----------------YVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR 152 (365)
Q Consensus 108 -----------------~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~ 152 (365)
..+.+.++.+.-. .+..+| ...+++++++||+ ..|+......+.+
T Consensus 89 v~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~ 168 (348)
T 3d31_A 89 VKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168 (348)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 1122333222110 000111 2347899999998 8899999999998
Q ss_pred HHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844 153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 153 ~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.|.+... +..+|++|++.+.. ..+.+|+.
T Consensus 169 ~l~~l~~~~g~tii~vTHd~~~~-~~~adri~ 199 (348)
T 3d31_A 169 MLSVLHKKNKLTVLHITHDQTEA-RIMADRIA 199 (348)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHH-HHHCSEEE
T ss_pred HHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence 8887632 56788888765432 34555553
No 119
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.80 E-value=5.8e-09 Score=92.16 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=79.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce---------ecCCCcceeccccccccccceecCCCCc-Cc-c
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK---------IDAGSRNIDLELTTLSSANHVELSPSDA-GF-Q 105 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 105 (365)
+.|.||+|+||||+++++++ +..+..|.+.+++.... ..|....... ...+..+.+.+..... .. .
T Consensus 36 ~~liG~nGsGKSTLl~~i~G-l~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~--~~~tv~enl~~~~~~~~~~~~ 112 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQF--FAERVFDEVAFAVKNFYPDRD 112 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGC--CCSSHHHHHHHTTTTTCTTSC
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCCcEEEECCEECchHHhhhhEEEEeccchhhc--CCCcHHHHHHHHHHhcCCHHH
Confidence 89999999999999999998 66788888888775431 0111000000 0001111111111000 00 1
Q ss_pred chhHHHHHHHHHHhc-------CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEE
Q 017844 106 DRYVVQEVIKEMAKN-------RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLI 164 (365)
Q Consensus 106 ~~~~~~~~l~~~~~~-------~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~I 164 (365)
....+.+.++.+.-. .+..+| ...+++++++||+ ..|++.....+.+.+.+.. .+..+|
T Consensus 113 ~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii 192 (266)
T 2yz2_A 113 PVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 192 (266)
T ss_dssp SHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 111233444432211 111112 1347899999998 7899999999999998763 355677
Q ss_pred EEecCCCcccHHHhccce
Q 017844 165 LCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 165 l~t~~~~~l~~~l~sR~~ 182 (365)
++|++.+. ...+.+|+.
T Consensus 193 ~vtHd~~~-~~~~~d~v~ 209 (266)
T 2yz2_A 193 LISHDIET-VINHVDRVV 209 (266)
T ss_dssp EECSCCTT-TGGGCSEEE
T ss_pred EEeCCHHH-HHHhCCEEE
Confidence 77776553 334455554
No 120
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.80 E-value=1.4e-09 Score=95.03 Aligned_cols=141 Identities=15% Similarity=0.186 Sum_probs=74.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceecc-c-----cccccccceecCCCCcCccch
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLE-L-----TTLSSANHVELSPSDAGFQDR 107 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~ 107 (365)
+.|.||+|+||||+++++++ +..+. |.+.+++......+.. ....+. + ...+..+.+.+.. ... ...
T Consensus 29 ~~liG~NGsGKSTLlk~l~G-l~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~-~~~ 104 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAG-MTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-HDK-TRT 104 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC-SST-TCH
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh-ccC-CcH
Confidence 89999999999999999998 56677 8888887543100000 000000 0 0000000111100 000 011
Q ss_pred hHHHHHHHHHHhcC-----CCCCCC------------CCCce-------EEEEeCC-CCCCHHHHHHHHHHHhhhc-Cce
Q 017844 108 YVVQEVIKEMAKNR-----PIDTKG------------KRGFK-------VLVLNEV-DKLSREAQHSLRRTMEKYS-ASC 161 (365)
Q Consensus 108 ~~~~~~l~~~~~~~-----~~~~~~------------~~~~~-------vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~ 161 (365)
..+.+.++.+.-.. +..+|+ ..+++ ++++||+ ..|++..+..+.+.+.+.. .+.
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ 184 (249)
T 2qi9_C 105 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGL 184 (249)
T ss_dssp HHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 22333333321110 001111 12456 9999998 7899999999999998764 345
Q ss_pred eEEEEecCCCcccHHHhccce
Q 017844 162 RLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 162 ~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+|++|++.+ ....+.+|+.
T Consensus 185 tviivtHd~~-~~~~~~d~v~ 204 (249)
T 2qi9_C 185 AIVMSSHDLN-HTLRHAHRAW 204 (249)
T ss_dssp EEEEECSCHH-HHHHHCSEEE
T ss_pred EEEEEeCCHH-HHHHhCCEEE
Confidence 5666666543 3344555654
No 121
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.80 E-value=5.4e-09 Score=91.50 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=38.1
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHH-hccce
Q 017844 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL 182 (365)
Q Consensus 130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l-~sR~~ 182 (365)
+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+. ...+ .+|+.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~ 215 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVH 215 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEE
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEE
Confidence 6789999998 78999999999999988743 4567777766543 3333 25553
No 122
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.79 E-value=9.7e-10 Score=98.72 Aligned_cols=125 Identities=18% Similarity=0.343 Sum_probs=74.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCcc-----------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ----------- 105 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 105 (365)
+.|.||+|+||||+++++++ +..+..|.+.+++.++.. .... + ....+.+.+++....
T Consensus 83 vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~G~~i~~-~~~~--~-------~r~~i~~v~Q~~~lf~~Tv~eNi~~~ 151 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFR-FYDISSGCIRIDGQDISQ-VTQA--S-------LRSHIGVVPQDTVLFNDTIADNIRYG 151 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTT-SSCCSEEEEEETTEETTS-BCHH--H-------HHHTEEEECSSCCCCSEEHHHHHHTT
T ss_pred EEEECCCCchHHHHHHHHHc-CCCCCCcEEEECCEEccc-CCHH--H-------HhcceEEEecCCccCcccHHHHHHhh
Confidence 89999999999999999998 678888888888865410 0000 0 000122222211111
Q ss_pred ----chhHHHHHHHH-----HHhcCC-----------CCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844 106 ----DRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (365)
Q Consensus 106 ----~~~~~~~~l~~-----~~~~~~-----------~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~ 152 (365)
....+.+.++. +....+ ..+|+ ..+++|+|+||+ ..|++.....+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~ 231 (306)
T 3nh6_A 152 RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231 (306)
T ss_dssp STTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 11112222111 111111 01121 126789999998 8899999999999
Q ss_pred HHhhhcCceeEEEEecCCCc
Q 017844 153 TMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~~ 172 (365)
.|.+...+..+|++|++...
T Consensus 232 ~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 232 SLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHHHTTSEEEEECCSHHH
T ss_pred HHHHHcCCCEEEEEEcChHH
Confidence 99877666677888776553
No 123
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.78 E-value=1.9e-08 Score=88.55 Aligned_cols=128 Identities=17% Similarity=0.276 Sum_probs=76.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee-cCCCCcCc-----------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGF----------- 104 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------- 104 (365)
+.|.||+|+||||+++++++ +. ++.+.+.+++..+...+. ...+. +.+++...
T Consensus 33 ~~i~G~NGsGKSTLlk~l~G-l~-p~~G~I~~~g~~~~~~~~-------------~~~i~~~v~Q~~~l~~tv~enl~~~ 97 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISG-LL-PYSGNIFINGMEVRKIRN-------------YIRYSTNLPEAYEIGVTVNDIVYLY 97 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SS-CCEEEEEETTEEGGGCSC-------------CTTEEECCGGGSCTTSBHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC-CC-CCCcEEEECCEECcchHH-------------hhheEEEeCCCCccCCcHHHHHHHh
Confidence 89999999999999999999 45 888888888754410000 00111 11111110
Q ss_pred -----cchhHHHHHHHHHHhc-C-----CCCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCc
Q 017844 105 -----QDRYVVQEVIKEMAKN-R-----PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 105 -----~~~~~~~~~l~~~~~~-~-----~~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~ 160 (365)
.....+.+.++.+.-. . +..+|+ ..+++++++||+ ..|++.....+.+.+.+...
T Consensus 98 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~- 176 (263)
T 2pjz_A 98 EELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK- 176 (263)
T ss_dssp HHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-
T ss_pred hhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-
Confidence 0111223333332111 0 001111 237899999998 88999999999999988754
Q ss_pred eeEEEEecCCCcccHHHhc-cce
Q 017844 161 CRLILCCNSSSKVTEAIRS-RCL 182 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~s-R~~ 182 (365)
.+|++|++.+.+ ..+.+ |+.
T Consensus 177 -tviivtHd~~~~-~~~~d~~i~ 197 (263)
T 2pjz_A 177 -EGILVTHELDML-NLYKEYKAY 197 (263)
T ss_dssp -EEEEEESCGGGG-GGCTTSEEE
T ss_pred -cEEEEEcCHHHH-HHhcCceEE
Confidence 677777765532 34455 543
No 124
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.78 E-value=6.2e-08 Score=108.22 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=58.1
Q ss_pred CCCceEEEEeCCCCCCH------HHHHHHHHHHhhhc------------CceeEEEEecCCC-----cccHHHhccceeE
Q 017844 128 KRGFKVLVLNEVDKLSR------EAQHSLRRTMEKYS------------ASCRLILCCNSSS-----KVTEAIRSRCLNI 184 (365)
Q Consensus 128 ~~~~~vliiDE~~~L~~------~~~~~Ll~~le~~~------------~~~~~Il~t~~~~-----~l~~~l~sR~~~i 184 (365)
.+++-|++|||++.-.. ...+.|.+.++... .++.+|.++|.+. .+.+++.+||.++
T Consensus 1334 ~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi 1413 (2695)
T 4akg_A 1334 DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAIL 1413 (2695)
T ss_dssp SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEE
T ss_pred CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEE
Confidence 34557999999875432 34566677776311 2466888888774 6899999999999
Q ss_pred EecCCCHHHHHHHHHHHHHH
Q 017844 185 RINSPTEEQIVKVLEFIAKK 204 (365)
Q Consensus 185 ~~~~~~~~~~~~iL~~~~~~ 204 (365)
.++.|+.+++..|+..++..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 125
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.75 E-value=8.6e-09 Score=91.23 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=35.0
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCC
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~ 171 (365)
.+++++++||+ ..|++.....+.+.|.+... +..+|++|++.+
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 47899999998 78999999999999988643 566777777654
No 126
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.73 E-value=1.8e-07 Score=87.47 Aligned_cols=170 Identities=13% Similarity=0.124 Sum_probs=101.2
Q ss_pred cccCHHHHHHHHHHHHcCC-----CCeEEEECCCCCcHHHHHHHH-HHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844 15 VIVHQDIAQNLKKLVTEQD-----CPHLLFYGPPGSGKKTLIMAL-LRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (365)
Q Consensus 15 iig~~~~~~~l~~~l~~~~-----~~~lll~Gp~G~GKTtla~~l-a~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
++||+.++..+.-.+-+|. -.|+|+.|+||+ ||++++.+ ++ +... .++..+.. +.. ..
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~-i~pR---~~ft~g~~----ss~--~g----- 278 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDH-LAPR---GVYVDLRR----TEL--TD----- 278 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHH-TCSS---EEEEEGGG----CCH--HH-----
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHH-hCCC---eEEecCCC----CCc--cC-----
Confidence 7899999888887776653 126999999999 99999999 66 3221 11111100 000 00
Q ss_pred cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------cC
Q 017844 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------SA 159 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---------~~ 159 (365)
+... .. .+.......+ . +. .....++++||++.+++..+.+|++.||+. +.
T Consensus 279 Lt~s-~r--~~tG~~~~~G----~----l~---------LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lpa 338 (506)
T 3f8t_A 279 LTAV-LK--EDRGWALRAG----A----AV---------LADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNA 338 (506)
T ss_dssp HSEE-EE--ESSSEEEEEC----H----HH---------HTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEEC
T ss_pred ceEE-EE--cCCCcccCCC----e----eE---------EcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCC
Confidence 0000 00 0000000000 0 00 112369999999999999999999999963 45
Q ss_pred ceeEEEEecCCC-----------cccHHHhcccee--EEecC-------------CCHHHHHHHHHHHH-HHcCCCCCHH
Q 017844 160 SCRLILCCNSSS-----------KVTEAIRSRCLN--IRINS-------------PTEEQIVKVLEFIA-KKEGLQLPSG 212 (365)
Q Consensus 160 ~~~~Il~t~~~~-----------~l~~~l~sR~~~--i~~~~-------------~~~~~~~~iL~~~~-~~~~~~i~~~ 212 (365)
.+.+|.++|... .+++++.|||.. +.... .+.+++.+++...- ..-...++++
T Consensus 339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~e 418 (506)
T 3f8t_A 339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEE 418 (506)
T ss_dssp CCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHH
T ss_pred CeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHH
Confidence 566777777543 688999999942 22232 33444555554332 1225678888
Q ss_pred HHHHHHHH
Q 017844 213 FATRLAEK 220 (365)
Q Consensus 213 ~~~~i~~~ 220 (365)
+.++|++.
T Consensus 419 a~~yI~~~ 426 (506)
T 3f8t_A 419 ARKRLEHW 426 (506)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 127
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.70 E-value=1.2e-08 Score=89.23 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=39.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+. ...+.+|+.++
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~d~v~~l 202 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLL 202 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH-HHHHCSEEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence 47899999998 78999999999999987643 4567777766442 33455555443
No 128
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.69 E-value=1e-08 Score=95.04 Aligned_cols=138 Identities=21% Similarity=0.310 Sum_probs=79.7
Q ss_pred HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcC-----
Q 017844 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG----- 103 (365)
Q Consensus 29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 103 (365)
+..|.. +.|.||+|+||||++++|++. .. ..+.+.+++..+...+.... ...+.+..++..
T Consensus 44 i~~Ge~--~~llGpsGsGKSTLLr~iaGl-~~-~~G~I~i~G~~i~~~~~~~~----------rr~ig~v~Q~~~lf~~t 109 (390)
T 3gd7_A 44 ISPGQR--VGLLGRTGSGKSTLLSAFLRL-LN-TEGEIQIDGVSWDSITLEQW----------RKAFGVIPQKVFIFSGT 109 (390)
T ss_dssp ECTTCE--EEEEESTTSSHHHHHHHHHTC-SE-EEEEEEESSCBTTSSCHHHH----------HHTEEEESCCCCCCSEE
T ss_pred EcCCCE--EEEECCCCChHHHHHHHHhCC-CC-CCeEEEECCEECCcCChHHH----------hCCEEEEcCCcccCccC
Confidence 344554 899999999999999999994 44 66888888765411110000 001111111110
Q ss_pred ---------ccchhHHHHHHHH-----HHhcCCCC-----------CCC------------CCCceEEEEeCC-CCCCHH
Q 017844 104 ---------FQDRYVVQEVIKE-----MAKNRPID-----------TKG------------KRGFKVLVLNEV-DKLSRE 145 (365)
Q Consensus 104 ---------~~~~~~~~~~l~~-----~~~~~~~~-----------~~~------------~~~~~vliiDE~-~~L~~~ 145 (365)
......+.+.++. +....+.. +|+ ..+++++++||+ ..|+..
T Consensus 110 v~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~ 189 (390)
T 3gd7_A 110 FRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189 (390)
T ss_dssp HHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHH
T ss_pred HHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 1111122233222 11212211 221 137899999998 889999
Q ss_pred HHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844 146 AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 146 ~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
....+.+.|.+......+|+++++.+.+ ...+|+.
T Consensus 190 ~~~~l~~~l~~~~~~~tvi~vtHd~e~~--~~aDri~ 224 (390)
T 3gd7_A 190 TYQIIRRTLKQAFADCTVILCEARIEAM--LECDQFL 224 (390)
T ss_dssp HHHHHHHHHHTTTTTSCEEEECSSSGGG--TTCSEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEEcCHHHH--HhCCEEE
Confidence 9999999998765567788888876533 2355553
No 129
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.68 E-value=2.6e-08 Score=87.60 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=35.3
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
+++++++||+ ..|++.....+.+.+.+...+..+|++|++...
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~ 216 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST 216 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 6789999998 789999999999999877556677777777654
No 130
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.68 E-value=1.6e-08 Score=89.24 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=33.8
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCC
Q 017844 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS 171 (365)
Q Consensus 130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~ 171 (365)
+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 7889999998 78999999999999988743 456666666644
No 131
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.66 E-value=1.8e-08 Score=87.72 Aligned_cols=36 Identities=31% Similarity=0.650 Sum_probs=31.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
+.|.||+|+||||+++++++ +..+..+.+.+++...
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~ 66 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPI 66 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSBSCEEETTEES
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEh
Confidence 89999999999999999998 6678888888887554
No 132
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.65 E-value=7.5e-09 Score=91.93 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=33.7
Q ss_pred HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
..|.. +.|.||+|+|||||++++++ +..++.+.+.+++..+
T Consensus 45 ~~Ge~--~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 45 AKGDK--WILYGLNGAGKTTLLNILNA-YEPATSGTVNLFGKMP 85 (279)
T ss_dssp ETTCE--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTBCC
T ss_pred cCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCCeEEEECCEEc
Confidence 34444 89999999999999999998 6678888888887554
No 133
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.62 E-value=3.6e-08 Score=96.89 Aligned_cols=147 Identities=16% Similarity=0.285 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceec-cccc----cccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDL-ELTT----LSSA 92 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~-~~~~----~~~~ 92 (365)
+++.+.-.+..|+. +.+.||+|+||||+++.+++ +..++.|.+.+++.+....+.. +...+ .+.. .+..
T Consensus 358 ~l~~i~l~i~~G~~--~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 434 (582)
T 3b5x_A 358 ALSHVSFSIPQGKT--VALVGRSGSGKSTIANLFTR-FYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA 434 (582)
T ss_pred ccccceEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHH
Confidence 44444444555555 89999999999999999999 6788889888888654110000 00000 0000 0000
Q ss_pred cceecCCCCcCccchhHHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEeCC-CCCC
Q 017844 93 NHVELSPSDAGFQDRYVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLS 143 (365)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~-----------~~~~~------------~~~~~vliiDE~-~~L~ 143 (365)
+.+.+... ...+...+.+.++.. ....+ ..+|+ ..+++++++||+ ..|+
T Consensus 435 eni~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD 512 (582)
T 3b5x_A 435 NNIAYAAE--GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512 (582)
T ss_pred HHHhccCC--CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 01111100 001111222222211 11111 11121 237899999999 7899
Q ss_pred HHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 144 REAQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 144 ~~~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
+.....+.+.+.+...+..+|++|++.+.
T Consensus 513 ~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b5x_A 513 TESERAIQAALDELQKNKTVLVIAHRLST 541 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999999999887656678888887653
No 134
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.58 E-value=2.5e-08 Score=86.53 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=37.4
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHh---hhcCceeEEEEecCCCcccHHHhccce
Q 017844 130 GFKVLVLNEV-DKLSREAQHSLRRTME---KYSASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 130 ~~~vliiDE~-~~L~~~~~~~Ll~~le---~~~~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
+++++++||+ ..|++.....+.+.+. +...+..+|++|++.+.+ . ..+|+.
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~-~~d~v~ 199 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-P-QVDVII 199 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-G-GSSEEE
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-H-hCCEEE
Confidence 6789999998 7899999999999884 333456778888776643 2 355553
No 135
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.58 E-value=2.2e-08 Score=98.36 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=74.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCc------------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------ 104 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 104 (365)
+.+.||+|+||||+++++++ +..+..|.+.+++.+....+... -...+.+.+++...
T Consensus 370 ~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~~~~~~~----------~r~~i~~v~Q~~~l~~~tv~eni~~~ 438 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPR-FYDVTSGQILIDGHNIKDFLTGS----------LRNQIGLVQQDNILFSDTVKENILLG 438 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTT-SSCCSEEEEEETTEEGGGSCHHH----------HHHTEEEECSSCCCCSSBHHHHHGGG
T ss_pred EEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEEhhhCCHHH----------HhhheEEEeCCCccCcccHHHHHhcC
Confidence 89999999999999999998 67888888888886541100000 00011111111111
Q ss_pred ---cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844 105 ---QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (365)
Q Consensus 105 ---~~~~~~~~~l~~~-----~~~~~~-----------~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~ 152 (365)
.....+.+..+.. ....+. .+|+ ..+++++++||+ ..|++.....+.+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~ 518 (578)
T 4a82_A 439 RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518 (578)
T ss_dssp CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 0111121221111 111110 1111 126789999999 8899999988999
Q ss_pred HHhhhcCceeEEEEecCCCcc
Q 017844 153 TMEKYSASCRLILCCNSSSKV 173 (365)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~~l 173 (365)
.+.+...+..+|++|++.+.+
T Consensus 519 ~l~~~~~~~t~i~itH~l~~~ 539 (578)
T 4a82_A 519 ALDVLSKDRTTLIVAHRLSTI 539 (578)
T ss_dssp HHHHHTTTSEEEEECSSGGGT
T ss_pred HHHHHcCCCEEEEEecCHHHH
Confidence 888776667788888877643
No 136
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.57 E-value=2.6e-08 Score=85.89 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=32.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHH-HhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRT-MEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~-le~~~~~~~~Il~t~~~~ 171 (365)
.+++++++||+ ..|++.....+.+. +.+...+..+|++|++.+
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 36789999998 78999999999886 455444566777777654
No 137
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.56 E-value=4.3e-08 Score=96.40 Aligned_cols=125 Identities=17% Similarity=0.284 Sum_probs=74.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcC-------------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG------------- 103 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 103 (365)
+.+.||+|+||||+++.+++ +..++.|.+.+++.+....+... . ...+.+.+++..
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g-~~~p~~G~i~~~g~~~~~~~~~~---~-------~~~i~~v~Q~~~l~~~tv~eni~~~ 440 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITR-FYDIDEGHILMDGHDLREYTLAS---L-------RNQVALVSQNVHLFNDTVANNIAYA 440 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTT-TTCCSEEEEEETTEETTTBCHHH---H-------HHTEEEECSSCCCCSSBHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhh-ccCCCCCeEEECCEEccccCHHH---H-------HhhCeEEccCCcCCCCCHHHHHhcc
Confidence 89999999999999999998 67888888888875541000000 0 001111111110
Q ss_pred ---ccchhHHHHHHHH-----HHhcCC-----------CCCCC------------CCCceEEEEeCC-CCCCHHHHHHHH
Q 017844 104 ---FQDRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (365)
Q Consensus 104 ---~~~~~~~~~~l~~-----~~~~~~-----------~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll 151 (365)
..+...+.+.++. +....+ ..+|+ ..+++++++||+ ..|++.....+.
T Consensus 441 ~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~ 520 (582)
T 3b60_A 441 RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520 (582)
T ss_dssp TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHH
Confidence 0111122222211 111111 11121 126789999999 889999999999
Q ss_pred HHHhhhcCceeEEEEecCCCc
Q 017844 152 RTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 152 ~~le~~~~~~~~Il~t~~~~~ 172 (365)
+.+.+...+..+|++|++.+.
T Consensus 521 ~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b60_A 521 AALDELQKNRTSLVIAHRLST 541 (582)
T ss_dssp HHHHHHHTTSEEEEECSCGGG
T ss_pred HHHHHHhCCCEEEEEeccHHH
Confidence 999887656678888887654
No 138
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.54 E-value=8.1e-08 Score=81.43 Aligned_cols=50 Identities=32% Similarity=0.446 Sum_probs=35.9
Q ss_pred cccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccc
Q 017844 5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKV 66 (365)
Q Consensus 5 ~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i 66 (365)
...+|++|. +..+++. +..|.. +.|.||+|+||||+++++++. .++.+.+
T Consensus 3 ~~i~pk~~g----~~~~l~~----i~~Ge~--~~liG~nGsGKSTLl~~l~Gl--~p~~G~I 52 (208)
T 3b85_A 3 AVIRPKTLG----QKHYVDA----IDTNTI--VFGLGPAGSGKTYLAMAKAVQ--ALQSKQV 52 (208)
T ss_dssp -CCCCCSHH----HHHHHHH----HHHCSE--EEEECCTTSSTTHHHHHHHHH--HHHTTSC
T ss_pred CccccCCHh----HHHHHHh----ccCCCE--EEEECCCCCCHHHHHHHHhcC--CCcCCee
Confidence 356788763 3444444 356665 899999999999999999994 5555555
No 139
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.53 E-value=2.8e-08 Score=97.97 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=37.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l 173 (365)
.+++++++||+ ..|++.....+.+.+.+...+..+|++|++.+.+
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTI 553 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 36789999999 8899999999999888776677788888887743
No 140
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.51 E-value=2.4e-08 Score=98.19 Aligned_cols=125 Identities=18% Similarity=0.321 Sum_probs=75.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCc------------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------ 104 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 104 (365)
+.+.||+|+||||+++++++ +..+..|.+.+++.+....+... -...+.+.+++...
T Consensus 372 ~~ivG~sGsGKSTll~~l~g-~~~~~~G~i~i~g~~i~~~~~~~----------~r~~i~~v~Q~~~lf~~tv~eni~~~ 440 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLIPR-LIDPERGRVEVDELDVRTVKLKD----------LRGHISAVPQETVLFSGTIKENLKWG 440 (587)
T ss_dssp EEEECSSSSSHHHHHHTTTT-SSCCSEEEEEESSSBGGGBCHHH----------HHHHEEEECSSCCCCSEEHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHhC-CccCCCcEEEECCEEcccCCHHH----------HHhheEEECCCCcCcCccHHHHHhcc
Confidence 89999999999999999998 67888888888886551100000 00111222221111
Q ss_pred ---cchhHHHHHHHH-----HHhcCC-----------CCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844 105 ---QDRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (365)
Q Consensus 105 ---~~~~~~~~~l~~-----~~~~~~-----------~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~ 152 (365)
.....+.+..+. .....+ ..+|+ ..+++++++||+ ..|++.....+.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~ 520 (587)
T 3qf4_A 441 REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520 (587)
T ss_dssp CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 111111111111 110010 01111 136799999999 7899999999999
Q ss_pred HHhhhcCceeEEEEecCCCc
Q 017844 153 TMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.+...+..+|++|++.+.
T Consensus 521 ~l~~~~~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 521 GLKRYTKGCTTFIITQKIPT 540 (587)
T ss_dssp HHHHHSTTCEEEEEESCHHH
T ss_pred HHHHhCCCCEEEEEecChHH
Confidence 99887667788888887653
No 141
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.46 E-value=7.1e-06 Score=92.05 Aligned_cols=167 Identities=16% Similarity=0.215 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCC
Q 017844 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (365)
.....+..++..+.. .++.||+|||||++++.+|+.+..+- +.++|
T Consensus 633 r~~~tl~~Al~~~~~--~~l~GpaGtGKTe~vk~LA~~lg~~~---v~~nc----------------------------- 678 (2695)
T 4akg_A 633 IGFATLTDSLHQKYG--GCFFGPAGTGKTETVKAFGQNLGRVV---VVFNC----------------------------- 678 (2695)
T ss_dssp HHHHHHHHHHHTTCE--EEEECCTTSCHHHHHHHHHHTTTCCC---EEEET-----------------------------
T ss_pred HHHHHHHHHHHhCCC--CcccCCCCCCcHHHHHHHHHHhCCcE---EEEEC-----------------------------
Confidence 344556666665544 78999999999999999999763221 11221
Q ss_pred CCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHH-------HHHhhh-------------cC
Q 017844 100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLR-------RTMEKY-------------SA 159 (365)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll-------~~le~~-------------~~ 159 (365)
.+.- +...+..++..++... ..+++||++.++++....+. ..+.+. .+
T Consensus 679 ~e~l--d~~~lg~~~~g~~~~G----------aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~ 746 (2695)
T 4akg_A 679 DDSF--DYQVLSRLLVGITQIG----------AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSP 746 (2695)
T ss_dssp TSSC--CHHHHHHHHHHHHHHT----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCT
T ss_pred CCCC--ChhHhhHHHHHHHhcC----------CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCC
Confidence 1110 1112334444444321 58999999999998877663 333221 12
Q ss_pred ceeEEEEec----CCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cC
Q 017844 160 SCRLILCCN----SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK-------------SN 222 (365)
Q Consensus 160 ~~~~Il~t~----~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~-------------~~ 222 (365)
+..++++.| ....+++++++||..+.+..|+.+.+.+++-. ..|+...+.....++.. .+
T Consensus 747 ~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hyd 823 (2695)
T 4akg_A 747 HTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYH 823 (2695)
T ss_dssp TCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCC
T ss_pred CceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCccc
Confidence 344566665 23469999999999999999999999888653 23554444444444331 12
Q ss_pred CCHHHHHHHHHHH
Q 017844 223 RSLRRAILSFETC 235 (365)
Q Consensus 223 g~lr~ai~~l~~~ 235 (365)
-.+|.....|..+
T Consensus 824 fglRalksvL~~a 836 (2695)
T 4akg_A 824 FGLRTLKGVLRNC 836 (2695)
T ss_dssp CSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 4677777776643
No 142
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.45 E-value=1.7e-07 Score=83.49 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=32.7
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHH-HhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRT-MEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~-le~~~~~~~~Il~t~~~~ 171 (365)
.+++++++||+ ..|++.....+.+. +.+...+..+|++|++.+
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~ 220 (290)
T 2bbs_A 176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220 (290)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred CCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 36789999998 78999999999886 444444566777777654
No 143
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.44 E-value=1.2e-07 Score=93.41 Aligned_cols=134 Identities=20% Similarity=0.332 Sum_probs=74.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceec-cccc----cccccceecCCCCcCccchh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDL-ELTT----LSSANHVELSPSDAGFQDRY 108 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~ 108 (365)
+.+.||+|+||||+++.+++ +..++.|.+.+++.+....+.. +...+ .+.. .+..+.+.+........+..
T Consensus 373 ~~ivG~sGsGKSTLl~~l~g-~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 451 (595)
T 2yl4_A 373 TALVGPSGSGKSTVLSLLLR-LYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE 451 (595)
T ss_dssp EEEECCTTSSSTHHHHHHTT-SSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHH
T ss_pred EEEECCCCCCHHHHHHHHhc-CcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHH
Confidence 89999999999999999998 6788888888888654100000 00000 0000 00000111111000001112
Q ss_pred HHHHHHHHHH-----hcCC-----------CCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC
Q 017844 109 VVQEVIKEMA-----KNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 109 ~~~~~l~~~~-----~~~~-----------~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~ 159 (365)
.+.+.++... ...+ ..+|+ ..+++++++||+ ..|++.....+.+.+.+...
T Consensus 452 ~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 531 (595)
T 2yl4_A 452 EIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD 531 (595)
T ss_dssp HHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc
Confidence 2333332211 1111 11121 126789999999 88999999999999988755
Q ss_pred ceeEEEEecCCC
Q 017844 160 SCRLILCCNSSS 171 (365)
Q Consensus 160 ~~~~Il~t~~~~ 171 (365)
+..+|++|++.+
T Consensus 532 ~~tvi~itH~~~ 543 (595)
T 2yl4_A 532 GRTVLVIAHRLS 543 (595)
T ss_dssp TSEEEEECCCHH
T ss_pred CCEEEEEecCHH
Confidence 667788887754
No 144
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.43 E-value=2.1e-07 Score=90.15 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=75.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (365)
+.|.||+|+||||+++++++ +..++.+.+.+.+..+...|....... ..+..+.+..............+.+.++.
T Consensus 297 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~l~~ 372 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVG-EITADEGSVTPEKQILSYKPQRIFPNY---DGTVQQYLENASKDALSTSSWFFEEVTKR 372 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSBCCEESSCCCEEEECSSCCCCC---SSBHHHHHHHHCSSTTCTTSHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCeeeEeechhccccc---CCCHHHHHHHhhhhccchhHHHHHHHHHH
Confidence 88999999999999999998 667777777665544322222110000 00000000000000000000011111111
Q ss_pred HHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHH
Q 017844 117 MAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEA 176 (365)
Q Consensus 117 ~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~ 176 (365)
+.- ..+..+| ...+++++++||+ ..|+...+..+.+.|.+.. .+..+|+++++.+ ....
T Consensus 373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~ 451 (538)
T 3ozx_A 373 LNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDY 451 (538)
T ss_dssp TTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHH
T ss_pred cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHH
Confidence 000 0000111 1236789999999 8899999999999988763 2456677776644 3455
Q ss_pred HhccceeEE
Q 017844 177 IRSRCLNIR 185 (365)
Q Consensus 177 l~sR~~~i~ 185 (365)
+.+|+.++.
T Consensus 452 ~aDri~vl~ 460 (538)
T 3ozx_A 452 IADRIIVFK 460 (538)
T ss_dssp HCSEEEEEE
T ss_pred hCCEEEEEe
Confidence 667765544
No 145
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.42 E-value=2.8e-06 Score=83.63 Aligned_cols=201 Identities=13% Similarity=0.126 Sum_probs=103.4
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHh---cCCC-CccceeccccceecCCCcc
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQV---FGPG-AEKVKVENKTWKIDAGSRN 81 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKTtla~~la~~l---~~~~-~~~i~~~~~~~~~~~~~~~ 81 (365)
.|.....++|.+..++.|..++... ..+.++|+||+|+||||+|..+++.. .... .+...++... ...
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~-----~~~- 192 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDK- 192 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES-----CCH-
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC-----Cch-
Confidence 3667788999999999999998742 23339999999999999999886421 0000 0111111100 000
Q ss_pred eecccccccc-ccceec--CCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844 82 IDLELTTLSS-ANHVEL--SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (365)
Q Consensus 82 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~ 158 (365)
.... ..+.. ...+.. ..............+.+...... ..++-++|+|+++. .. .++..+
T Consensus 193 ~~~~-~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~LLVLDdv~~--~~-------~l~~l~ 255 (591)
T 1z6t_A 193 SGLL-MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR-------KHPRSLLILDDVWD--SW-------VLKAFD 255 (591)
T ss_dssp HHHH-HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH-------TCTTCEEEEEEECC--HH-------HHHTTC
T ss_pred HHHH-HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc-------CCCCeEEEEeCCCC--HH-------HHHHhc
Confidence 0000 00000 000000 00000111111122222222211 11346999999974 21 233345
Q ss_pred CceeEEEEecCCCcccHHHhccceeEE-ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844 159 ASCRLILCCNSSSKVTEAIRSRCLNIR-INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (365)
Q Consensus 159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~-~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~ 233 (365)
.+..+|+||.+..-. .........+. ..+++.++..+++...+... ..-.++....|++.++|.+--+..+..
T Consensus 256 ~~~~ilvTsR~~~~~-~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~ 329 (591)
T 1z6t_A 256 SQCQILLTTRDKSVT-DSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGA 329 (591)
T ss_dssp SSCEEEEEESCGGGG-TTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCeEEEECCCcHHH-HhcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHH
Confidence 677788877664421 11111112222 25899999999998876431 111245788899999998865544433
No 146
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.36 E-value=5.6e-07 Score=87.31 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=40.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeEE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIR 185 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i~ 185 (365)
.+++++++||+ ..|+...+..+.+.|.+.. ....+|++|++.+ ....+.+|+.++.
T Consensus 418 ~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~ 476 (538)
T 1yqt_A 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFE 476 (538)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 46789999999 7899999999999988763 2456777776644 3345566665443
No 147
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.36 E-value=2.9e-07 Score=76.49 Aligned_cols=50 Identities=8% Similarity=0.089 Sum_probs=34.8
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC------cccHHHhccce
Q 017844 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEAIRSRCL 182 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~------~l~~~l~sR~~ 182 (365)
++++++|||++.++++....|....++ +..+|+++...+ ...+.+.+++.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad 131 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLAD 131 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCS
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhh
Confidence 568999999999987766666666654 566777766443 34456666663
No 148
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.35 E-value=4.4e-06 Score=94.34 Aligned_cols=76 Identities=13% Similarity=0.253 Sum_probs=56.8
Q ss_pred CCceEEEEeCCCCCCH------HHHHHHHHHHhhh------------cCceeEEEEecCCC-----cccHHHhccceeEE
Q 017844 129 RGFKVLVLNEVDKLSR------EAQHSLRRTMEKY------------SASCRLILCCNSSS-----KVTEAIRSRCLNIR 185 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~------~~~~~Ll~~le~~------------~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~ 185 (365)
+++-|++|||++.-.. ...+.|+..++.. ..++.+|.++|.+. .+.+++.+||.++.
T Consensus 1373 Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~ 1452 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL 1452 (3245)
T ss_dssp TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEE
T ss_pred CceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEE
Confidence 5667999999975443 2556677777631 13456777777653 48899999999999
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q 017844 186 INSPTEEQIVKVLEFIAKK 204 (365)
Q Consensus 186 ~~~~~~~~~~~iL~~~~~~ 204 (365)
++.|+.+++..|...+...
T Consensus 1453 i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999999998776543
No 149
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.34 E-value=1.8e-06 Score=78.58 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
+.+.+...+..|.. +++.||+|+||||+++++++ +..+..+.+.+++.
T Consensus 160 ~l~~l~~~i~~g~~--v~i~G~~GsGKTTll~~l~g-~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 160 AISAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIME-FIPKEERIISIEDT 207 (330)
T ss_dssp HHHHHHHHHHHTCC--EEEEESTTSCHHHHHHHGGG-GSCTTSCEEEEESS
T ss_pred HHhhhhhhccCCCE--EEEECCCCCCHHHHHHHHhC-CCcCCCcEEEECCe
Confidence 66777777877876 99999999999999999998 45666677776653
No 150
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.34 E-value=6.1e-07 Score=88.10 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=40.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeEE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIR 185 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i~ 185 (365)
.+++++++||+ ..|+...+..+.+.|.+.. .+..+|+++++.. ....+.+|+.++.
T Consensus 488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~ 546 (607)
T 3bk7_A 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFE 546 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc
Confidence 47789999998 7899999999999998763 3456777766544 3445566665543
No 151
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.30 E-value=1.2e-06 Score=84.93 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=40.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|++.....+++.|++... +..+|+++++.. ....+.+|+.++
T Consensus 175 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl 231 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV 231 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 36799999998 88999999888888887633 566777777644 445566666544
No 152
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.29 E-value=1.1e-06 Score=73.88 Aligned_cols=60 Identities=8% Similarity=0.117 Sum_probs=42.1
Q ss_pred CceEEEEeCCCCCC--H-HHH--HHHHHHHhhhc-CceeEEEEecCCCcccHHHhccce-eEEecCC
Q 017844 130 GFKVLVLNEVDKLS--R-EAQ--HSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCL-NIRINSP 189 (365)
Q Consensus 130 ~~~vliiDE~~~L~--~-~~~--~~Ll~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~ 189 (365)
+..|+||||++.+. . +.. ..++..++... ....+|++++.+..+..++++|+. .+++.++
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 35799999999872 1 111 13555555543 346789999998899999999985 6677654
No 153
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.29 E-value=7.2e-06 Score=80.02 Aligned_cols=187 Identities=15% Similarity=0.196 Sum_probs=95.6
Q ss_pred ccCHHHHHHHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHHH---hcCCCCccceeccccceecCCCcc-eeccccc
Q 017844 16 IVHQDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQ---VFGPGAEKVKVENKTWKIDAGSRN-IDLELTT 88 (365)
Q Consensus 16 ig~~~~~~~l~~~l~~~---~~~~lll~Gp~G~GKTtla~~la~~---l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~ 88 (365)
+|.+..++.+..++..+ ....+.|+|+.|+||||+|+.+++. -.... +++..| .+..... .+. ..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~-----F~~~~w-v~vs~~~~~~~--~~ 202 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGIN-----YDSIVW-LKDSGTAPKST--FD 202 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTT-----BSEEEE-EECCCCSTTHH--HH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhcc-----CCcEEE-EEECCCCCCCH--HH
Confidence 49999999999988654 2333899999999999999999862 11111 112222 0000000 000 00
Q ss_pred cccccce-ecCCC-------CcCccchhHHHHHHHHHHhcCCCCCCCCCC-ceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844 89 LSSANHV-ELSPS-------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (365)
Q Consensus 89 ~~~~~~~-~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~vliiDE~~~L~~~~~~~Ll~~le~~~~ 159 (365)
.. ...+ .+... .....+.......+.... .++ +-++|+|++... +.. . +... .
T Consensus 203 ~~-~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L---------~~~kr~LlVLDdv~~~--~~~-~----~~~~-~ 264 (549)
T 2a5y_B 203 LF-TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL---------IDRPNTLFVFDDVVQE--ETI-R----WAQE-L 264 (549)
T ss_dssp HH-HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH---------TTSTTEEEEEEEECCH--HHH-H----HHHH-T
T ss_pred HH-HHHHHHHhcCcccccccccccccHHHHHHHHHHHH---------cCCCcEEEEEECCCCc--hhh-c----cccc-C
Confidence 00 0000 00000 000000011122222221 222 579999999752 211 1 1111 4
Q ss_pred ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Q 017844 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEKSNRSLRRAI 229 (365)
Q Consensus 160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~-~i~~~~~~~i~~~~~g~lr~ai 229 (365)
+.++|+||.+.. +..........+.+++++.++..+++.+.+..... .-.++....|++.++|.+-.+.
T Consensus 265 gs~ilvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~ 334 (549)
T 2a5y_B 265 RLRCLVTTRDVE-ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLM 334 (549)
T ss_dssp TCEEEEEESBGG-GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCEEEEEcCCHH-HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHH
Confidence 667777776543 22211112246899999999999999876432211 1113467888999988875443
No 154
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.28 E-value=3.6e-06 Score=70.04 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=41.4
Q ss_pred CCCceEEEEeCCCCC---CHHHHHHHHHHHhhhcCceeEE--EEe-cCC-CcccHHHhcc--ceeEEecCCCHHHHHHHH
Q 017844 128 KRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLI--LCC-NSS-SKVTEAIRSR--CLNIRINSPTEEQIVKVL 198 (365)
Q Consensus 128 ~~~~~vliiDE~~~L---~~~~~~~Ll~~le~~~~~~~~I--l~t-~~~-~~l~~~l~sR--~~~i~~~~~~~~~~~~iL 198 (365)
..+++|+|+||+..+ +......+.++++.. ...++ ++. ++. ..+.+.+..+ +.++.+..-+.+.+..-+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~--~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i 180 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP--GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS--SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC--CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence 456789999997554 556677777777753 22232 122 222 2456666654 467888776655555444
No 155
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.28 E-value=6.2e-06 Score=70.35 Aligned_cols=111 Identities=13% Similarity=0.136 Sum_probs=56.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (365)
++++||+|+||||++..++..+.........+..... .. .. ..+ ..++.+......... ..++...
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d------~r-~~--~~i--~srlG~~~~~~~~~~---~~~i~~~ 80 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID------TR-SI--RNI--QSRTGTSLPSVEVES---APEILNY 80 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC------GG-GC--SSC--CCCCCCSSCCEEESS---THHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC------ch-HH--HHH--HHhcCCCccccccCC---HHHHHHH
Confidence 8999999999999998887766443322222211000 00 00 000 011111111101111 1233333
Q ss_pred HHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (365)
Q Consensus 117 ~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~ 169 (365)
+.... ...++++|+|||++.++.+....+ ..+.+. ++.+|++...
T Consensus 81 i~~~~-----~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~~--gi~Vil~Gl~ 125 (223)
T 2b8t_A 81 IMSNS-----FNDETKVIGIDEVQFFDDRICEVA-NILAEN--GFVVIISGLD 125 (223)
T ss_dssp HHSTT-----SCTTCCEEEECSGGGSCTHHHHHH-HHHHHT--TCEEEEECCS
T ss_pred HHHHh-----hCCCCCEEEEecCccCcHHHHHHH-HHHHhC--CCeEEEEecc
Confidence 33211 134568999999999987755544 334332 6778888773
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.27 E-value=2.6e-06 Score=74.81 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=35.7
Q ss_pred CCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 9 P~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
+.+++++--. .+++.+. +..|.. ++|.||+|+||||+++++++.+.....+.+.+.+.
T Consensus 5 ~~~l~~l~~~-~vl~~i~--i~~g~~--v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 5 IPEFKKLGLP-DKVLELC--HRKMGL--ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp -CCGGGSSCC-THHHHGG--GCSSEE--EEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCChHHCCCH-HHHHHHh--hCCCCE--EEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 3445555322 3444443 333333 99999999999999999999653222455555443
No 157
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.26 E-value=5e-07 Score=74.11 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=30.3
Q ss_pred CCCceEEEEeCC-CCCCHH----------------HHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844 128 KRGFKVLVLNEV-DKLSRE----------------AQHSLRRTMEKYS-ASCRLILCCNSSS 171 (365)
Q Consensus 128 ~~~~~vliiDE~-~~L~~~----------------~~~~Ll~~le~~~-~~~~~Il~t~~~~ 171 (365)
..+++++++||+ ..+++. ....+.+.+.+.. .+..+|+++++.+
T Consensus 99 ~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 99 HCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp TCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 357799999998 566666 4466677765542 3566888887754
No 158
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.1e-06 Score=83.00 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=39.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 238 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl 294 (608)
T 3j16_B 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCII 294 (608)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred hCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 36789999998 78999999999999987654 345666665544 345566676554
No 159
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.22 E-value=6.3e-07 Score=95.58 Aligned_cols=133 Identities=20% Similarity=0.281 Sum_probs=79.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc--------------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-------------- 102 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 102 (365)
+.|.||+|+||||+++++++ +..+..|.+.+++.+....+. ..+ ...+.+.+++.
T Consensus 1062 v~ivG~sGsGKSTl~~~l~g-~~~p~~G~I~i~g~~i~~~~~--------~~~--r~~i~~v~Q~~~l~~~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1062 LALVGSSGCGKSTVVQLLER-FYDPMAGSVFLDGKEIKQLNV--------QWL--RAQLGIVSQEPILFDCSIAENIAYG 1130 (1284)
T ss_dssp EEEECSSSTTHHHHHHHHTT-SSCCSEEEEESSSSCTTSSCH--------HHH--TTSCEEEESSCCCCSSBHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEEcccCCH--------HHH--HhceEEECCCCccccccHHHHHhcc
Confidence 89999999999999999998 678888888888865511000 000 00111111111
Q ss_pred ---CccchhHHHHHHHH-----HHhcCCC-----------CCCCC------------CCceEEEEeCC-CCCCHHHHHHH
Q 017844 103 ---GFQDRYVVQEVIKE-----MAKNRPI-----------DTKGK------------RGFKVLVLNEV-DKLSREAQHSL 150 (365)
Q Consensus 103 ---~~~~~~~~~~~l~~-----~~~~~~~-----------~~~~~------------~~~~vliiDE~-~~L~~~~~~~L 150 (365)
.......+.+..+. +....+. .+|+. .+++|+++||+ ..|+..+...+
T Consensus 1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 00111112222221 1111111 11111 26789999999 78999999999
Q ss_pred HHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844 151 RRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 151 l~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+.+++...+..+|++|++.+.+.. .+|+.
T Consensus 1211 ~~~l~~~~~~~tvi~isH~l~~i~~--~dri~ 1240 (1284)
T 3g5u_A 1211 QEALDKAREGRTCIVIAHRLSTIQN--ADLIV 1240 (1284)
T ss_dssp HHHHHHHSSSSCEEEECSCTTGGGS--CSEEE
T ss_pred HHHHHHhCCCCEEEEEecCHHHHHc--CCEEE
Confidence 9999887667788889988875422 45543
No 160
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.20 E-value=9.3e-07 Score=94.29 Aligned_cols=125 Identities=18% Similarity=0.292 Sum_probs=73.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccc----------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD---------- 106 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 106 (365)
+.+.||+|+||||+++++++ +..+..|.+.+++.+... ... . .-...+.+.+++.....
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g-~~~~~~G~i~i~g~~i~~-~~~-------~--~~r~~i~~v~Q~~~l~~~ti~eNi~~g 487 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQR-LYDPLDGMVSIDGQDIRT-INV-------R--YLREIIGVVSQEPVLFATTIAENIRYG 487 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTT-SSCCSEEEEEETTEEGGG-SCH-------H--HHHHHEEEECSSCCCCSSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEHHh-CCH-------H--HHHhheEEEcCCCccCCccHHHHHhcC
Confidence 89999999999999999998 667888888888865410 000 0 00011222222221111
Q ss_pred -----hhHHHHHHHH-----HHhcCCC-----------CCCC------------CCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844 107 -----RYVVQEVIKE-----MAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (365)
Q Consensus 107 -----~~~~~~~l~~-----~~~~~~~-----------~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~ 152 (365)
...+.+..+. +....+. .+|+ ..+++|+++||+ ..|+.+....+.+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~ 567 (1284)
T 3g5u_A 488 REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567 (1284)
T ss_dssp CSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 1111111111 0000110 1111 126789999999 7899998888888
Q ss_pred HHhhhcCceeEEEEecCCCc
Q 017844 153 TMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~~ 172 (365)
.+++...+..+|+++++...
T Consensus 568 ~l~~~~~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 568 ALDKAREGRTTIVIAHRLST 587 (1284)
T ss_dssp HHHHHHTTSEEEEECSCHHH
T ss_pred HHHHHcCCCEEEEEecCHHH
Confidence 88776667778888887653
No 161
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.19 E-value=8e-07 Score=95.06 Aligned_cols=126 Identities=18% Similarity=0.302 Sum_probs=78.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCc------------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------ 104 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 104 (365)
+.|+||+|+||||+++++.+ +..+..|.+.++|.+...-+ . ..+ ...+.+.+++...
T Consensus 1108 vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~iDG~di~~i~------~--~~l--R~~i~~V~Qdp~LF~gTIreNI~~g 1176 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLER-FYDTLGGEIFIDGSEIKTLN------P--EHT--RSQIAIVSQEPTLFDCSIAENIIYG 1176 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTT-SSCCSSSEEEETTEETTTBC------H--HHH--HTTEEEECSSCCCCSEEHHHHHSSS
T ss_pred EEEECCCCChHHHHHHHHhc-CccCCCCEEEECCEEhhhCC------H--HHH--HhheEEECCCCEeeCccHHHHHhcc
Confidence 89999999999999999998 77889999999987651000 0 000 1122233332211
Q ss_pred -----cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC-CCCCHHHHHHH
Q 017844 105 -----QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSL 150 (365)
Q Consensus 105 -----~~~~~~~~~l~~~-----~~~~~~-----------~~~~------------~~~~~vliiDE~-~~L~~~~~~~L 150 (365)
.+...+.+.++.. ....|- .+|+ -.+++|+|+||+ ..++.+....+
T Consensus 1177 ld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~I 1256 (1321)
T 4f4c_A 1177 LDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256 (1321)
T ss_dssp SCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHH
Confidence 1111222222211 111111 0111 126789999999 78999999999
Q ss_pred HHHHhhhcCceeEEEEecCCCcc
Q 017844 151 RRTMEKYSASCRLILCCNSSSKV 173 (365)
Q Consensus 151 l~~le~~~~~~~~Il~t~~~~~l 173 (365)
.+.+++...+..+|+++++...+
T Consensus 1257 q~~l~~~~~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1257 QEALDRAREGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp HHHHTTTSSSSEEEEECSSSSTT
T ss_pred HHHHHHHcCCCEEEEeccCHHHH
Confidence 99999887788899999887654
No 162
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.17 E-value=2.2e-06 Score=84.16 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=40.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeEE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR 185 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i~ 185 (365)
.+++++++||+ ..|+......+.+.|.+... +..+|+++++.. ....+.+|+.++.
T Consensus 245 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~ 302 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVY 302 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEEC
Confidence 36799999998 88999998888888887633 566777777644 4455566665443
No 163
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.17 E-value=1.1e-05 Score=73.87 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=31.2
Q ss_pred CCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844 9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 9 P~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
+.+++++... ..+..+ ....+. .++++||+|+||||+++++++.+..
T Consensus 103 ~~~l~~lg~~-~~l~~l--~~~~~g--~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 103 VLTMEELGMG-EVFKRV--SDVPRG--LVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp CCCTTTTTCC-HHHHHH--HHCSSE--EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHcCCh-HHHHHH--HhCCCC--EEEEECCCCCCHHHHHHHHHhcccC
Confidence 3456666443 333333 222222 4999999999999999999997643
No 164
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.17 E-value=8.7e-06 Score=69.45 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|.||+|+||||+++.+++.+
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 8999999999999999999854
No 165
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.17 E-value=4.4e-05 Score=81.45 Aligned_cols=199 Identities=14% Similarity=0.155 Sum_probs=103.4
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHh---cCCCCccc-eeccccceecCCCcc
Q 017844 8 RPKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQV---FGPGAEKV-KVENKTWKIDAGSRN 81 (365)
Q Consensus 8 rP~~~~~iig~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKTtla~~la~~l---~~~~~~~i-~~~~~~~~~~~~~~~ 81 (365)
-|.....++|.+..++.|...+... ....+.|+|+.|+||||||+.+++.. .......+ .++.... ..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~- 192 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ-----DK- 192 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC-----CH-
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc-----Cc-
Confidence 3556678999999999999998543 22338999999999999998876542 11011100 1110000 00
Q ss_pred eecccccccc-ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844 82 IDLELTTLSS-ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (365)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~ 160 (365)
.... ..... ...+........ .......+....+..... ...++-+||+|+++. .. .++....+
T Consensus 193 ~~~~-~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~----~~~~~~LlvlDd~~~--~~-------~~~~~~~~ 257 (1249)
T 3sfz_A 193 SGLL-MKLQNLCMRLDQEESFSQ-RLPLNIEEAKDRLRVLML----RKHPRSLLILDDVWD--PW-------VLKAFDNQ 257 (1249)
T ss_dssp HHHH-HHHHHHHHHHTTTCTTCS-SCCSSHHHHHHHHHHHTS----SSSCSCEEEEESCCC--HH-------HHTTTCSS
T ss_pred hHHH-HHHHHHHHHhhhhccccc-CCCCCHHHHHHHHHHHHh----ccCCCEEEEEecCCC--HH-------HHHhhcCC
Confidence 0000 00000 000000000000 000012222222222111 122356999999974 21 23334567
Q ss_pred eeEEEEecCCCcccHHHhccceeEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Q 017844 161 CRLILCCNSSSKVTEAIRSRCLNIRINS-PTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229 (365)
Q Consensus 161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~-~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai 229 (365)
.++|+||.+..- ..........+.+.+ ++.++-.+.+...+....-. .++....|++.++|-+-.+.
T Consensus 258 ~~ilvTtR~~~~-~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLal~ 325 (1249)
T 3sfz_A 258 CQILLTTRDKSV-TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLVVS 325 (1249)
T ss_dssp CEEEEEESSTTT-TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHHHH
T ss_pred CEEEEEcCCHHH-HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHHHH
Confidence 788888876542 111122234677875 99999999998776432222 23567889999988775443
No 166
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.13 E-value=2.4e-06 Score=82.79 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=41.7
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+...+..+.+.+.+...+..+|+++++.+ ....+.+|+.++
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~-~~~~~~d~i~vl 210 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI-VLDYLTDLIHII 210 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHH-HHHHHCSEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChH-HHHhhCCEEEEe
Confidence 36789999998 78999999999999988765666777777654 445566666544
No 167
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.12 E-value=5.5e-06 Score=81.28 Aligned_cols=55 Identities=5% Similarity=0.117 Sum_probs=39.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeE
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i 184 (365)
.+++++++||+ ..|+......+.++|.+.. .+..+|++|++.+ ....+.+|+.++
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl 541 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVF 541 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEC
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 47899999998 7899999988888887753 2456777776654 334555666443
No 168
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.12 E-value=7.8e-07 Score=77.39 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+.|.||||+||||+++.++..
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999843
No 169
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.11 E-value=4.5e-05 Score=67.20 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
+.|.||+|+||||+++++++. ..+..+.+.+++.
T Consensus 5 v~lvG~nGaGKSTLln~L~g~-~~~~~G~i~~~g~ 38 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKS-QVSRKASSWNREE 38 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHH-HC-----------
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCCCCCccccCCc
Confidence 789999999999999999994 4566666655554
No 170
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.09 E-value=8.7e-07 Score=94.78 Aligned_cols=126 Identities=21% Similarity=0.324 Sum_probs=74.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCc------------
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------ 104 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 104 (365)
+.++||+|+||||+++++.+ ++.+..|.+.+++.+.. +-.. . .-...+.+++++.-.
T Consensus 447 vaivG~sGsGKSTll~ll~~-~~~~~~G~I~idG~~i~-~~~~-------~--~lr~~i~~v~Q~~~Lf~~TI~eNI~~g 515 (1321)
T 4f4c_A 447 VALVGSSGCGKSTIISLLLR-YYDVLKGKITIDGVDVR-DINL-------E--FLRKNVAVVSQEPALFNCTIEENISLG 515 (1321)
T ss_dssp EEEEECSSSCHHHHHHHHTT-SSCCSEEEEEETTEETT-TSCH-------H--HHHHHEEEECSSCCCCSEEHHHHHHTT
T ss_pred EEEEecCCCcHHHHHHHhcc-ccccccCcccCCCccch-hccH-------H--HHhhcccccCCcceeeCCchhHHHhhh
Confidence 89999999999999999998 66888888888886541 0000 0 000112222222111
Q ss_pred ---cchhHHHHHHHH-----HHhcCCC-----------CCCC------------CCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844 105 ---QDRYVVQEVIKE-----MAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (365)
Q Consensus 105 ---~~~~~~~~~l~~-----~~~~~~~-----------~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~ 152 (365)
.+...+.+..+. +...-|- .+|+ ..+++|+++||+ ..++.+....+.+
T Consensus 516 ~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~ 595 (1321)
T 4f4c_A 516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595 (1321)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHH
Confidence 111112222211 0011110 1111 236789999998 7788877777788
Q ss_pred HHhhhcCceeEEEEecCCCcc
Q 017844 153 TMEKYSASCRLILCCNSSSKV 173 (365)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~~l 173 (365)
.+++...+..+|++|++...+
T Consensus 596 ~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 596 ALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp HHHHHHTTSEEEEECSCTTTT
T ss_pred HHHHHhCCCEEEEEcccHHHH
Confidence 887776677888899887643
No 171
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.03 E-value=9.3e-06 Score=79.97 Aligned_cols=129 Identities=14% Similarity=0.157 Sum_probs=63.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhcCC-CCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHH
Q 017844 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ 111 (365)
Q Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (365)
..|.+.+.||+|+||||+++++++. ..| +.|.+.+++..+....... .......+.+..++....+...+.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~-------~~~~~~~i~~v~Q~~~l~~~~tv~ 115 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVN-------EDKWRGKVSYQDYEIEISDASEVE 115 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSS-------SSCCEEEESCC---CCCCCHHHHH
T ss_pred cCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCc-------cccceeEEeeecccccCCCHHHHH
Confidence 3455999999999999999999994 445 5677766664420000000 000112344444444444545555
Q ss_pred HHHHHHHhcC---CCCC---------CCCCCceEEEEeCC-------CCCCHHHHHHHHHHHhhh---cCceeEEEEecC
Q 017844 112 EVIKEMAKNR---PIDT---------KGKRGFKVLVLNEV-------DKLSREAQHSLRRTMEKY---SASCRLILCCNS 169 (365)
Q Consensus 112 ~~l~~~~~~~---~~~~---------~~~~~~~vliiDE~-------~~L~~~~~~~Ll~~le~~---~~~~~~Il~t~~ 169 (365)
+.+....... .... .....++++++||+ ..+++.....+..++.++ +..+.+++++++
T Consensus 116 e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~ 195 (608)
T 3szr_A 116 KEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN 195 (608)
T ss_dssp TTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred HHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 5554432111 0000 11235689999999 344555555566666553 223444444433
No 172
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.01 E-value=0.00028 Score=80.15 Aligned_cols=168 Identities=13% Similarity=0.182 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (365)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (365)
+...-.+..++..+.. ..+.||+|||||.+++.+|+.+..+- +.++
T Consensus 591 drcy~tl~~Al~~~~g--g~~~GPaGtGKTet~k~La~~lgr~~---~vfn----------------------------- 636 (3245)
T 3vkg_A 591 DRCYLTLTQALESRMG--GNPFGPAGTGKTETVKALGSQLGRFV---LVFC----------------------------- 636 (3245)
T ss_dssp HHHHHHHHHHHHTTCE--EEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-----------------------------
T ss_pred HHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHhCCeE---EEEe-----------------------------
Confidence 3445566677765554 56889999999999999999763211 1111
Q ss_pred CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh-------hh--------------
Q 017844 99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME-------KY-------------- 157 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le-------~~-------------- 157 (365)
+++.- +...+..++..++... .-.++||++++..+....+...+. +.
T Consensus 637 C~~~~--d~~~~g~i~~G~~~~G----------aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l 704 (3245)
T 3vkg_A 637 CDEGF--DLQAMSRIFVGLCQCG----------AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISL 704 (3245)
T ss_dssp CSSCC--CHHHHHHHHHHHHHHT----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEEC
T ss_pred CCCCC--CHHHHHHHHhhHhhcC----------cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEee
Confidence 11111 1112334445554422 367999999999987776655443 10
Q ss_pred cCceeEEEEecC----CCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------
Q 017844 158 SASCRLILCCNS----SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK------------- 220 (365)
Q Consensus 158 ~~~~~~Il~t~~----~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~------------- 220 (365)
..++.++++.|. ...+++.+++||..+.+..|+.+.+.+++-. .+|+.-.......++..
T Consensus 705 ~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~H 781 (3245)
T 3vkg_A 705 HQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSH 781 (3245)
T ss_dssp CTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred cCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 123445666652 2479999999999999999999999988753 45665334444333331
Q ss_pred cCCCHHHHHHHHHHH
Q 017844 221 SNRSLRRAILSFETC 235 (365)
Q Consensus 221 ~~g~lr~ai~~l~~~ 235 (365)
.+-.+|...+.|..+
T Consensus 782 YDfGLRalKsVL~~A 796 (3245)
T 3vkg_A 782 YDFGLRALKSVLVSA 796 (3245)
T ss_dssp CCCSHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHH
Confidence 234577777777654
No 173
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.95 E-value=2.8e-06 Score=82.37 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=33.4
Q ss_pred HHHHHHHHH-HHHcCCCCeEEEECCCCCcHHHHHHHH--HHHhcCCCCccceeccc
Q 017844 19 QDIAQNLKK-LVTEQDCPHLLFYGPPGSGKKTLIMAL--LRQVFGPGAEKVKVENK 71 (365)
Q Consensus 19 ~~~~~~l~~-~l~~~~~~~lll~Gp~G~GKTtla~~l--a~~l~~~~~~~i~~~~~ 71 (365)
..+++.+.. .+..|.. ++|.||||+||||+++.+ ++ +..++.+.+++++.
T Consensus 25 ~~~Ld~i~~G~i~~Ge~--~~l~G~nGsGKSTL~~~~ll~G-l~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRS--TLVSGTSGTGKTLFSIQFLYNG-IIEFDEPGVFVTFE 77 (525)
T ss_dssp CTTHHHHTTSSEETTSE--EEEEESTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS
T ss_pred chhHHHhcCCCCCCCeE--EEEEcCCCCCHHHHHHHHHHHH-HHhCCCCEEEEEEe
Confidence 334444443 4444544 999999999999999994 55 44445566776654
No 174
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.92 E-value=5.6e-06 Score=66.76 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=29.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
+.|.||+|+||||+++.+++.+ +..+.+.+++..+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i 70 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTL 70 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEee
Confidence 8999999999999999999965 6677777766544
No 175
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.90 E-value=1.8e-05 Score=72.78 Aligned_cols=45 Identities=27% Similarity=0.423 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
+.+...+..|.. ++|.||+|+||||+++++++ +..+..+.+.+++
T Consensus 166 ~~l~~~i~~G~~--i~ivG~sGsGKSTll~~l~~-~~~~~~g~I~ie~ 210 (361)
T 2gza_A 166 SFLRRAVQLERV--IVVAGETGSGKTTLMKALMQ-EIPFDQRLITIED 210 (361)
T ss_dssp HHHHHHHHTTCC--EEEEESSSSCHHHHHHHHHT-TSCTTSCEEEEES
T ss_pred HHHHHHHhcCCE--EEEECCCCCCHHHHHHHHHh-cCCCCceEEEECC
Confidence 667777778876 99999999999999999998 4566667676664
No 176
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.87 E-value=3.1e-05 Score=66.23 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.|.||||+||||+++.++..+.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998543
No 177
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.85 E-value=4.2e-05 Score=71.75 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=34.4
Q ss_pred eEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 132 ~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
+++|+||+ ..|+......+.+.|.+...+..+|++|+++.
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~ 357 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ 357 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 89999999 68999999999999998876677888888753
No 178
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.85 E-value=2.8e-05 Score=71.10 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=25.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~ 69 (365)
++|+||||+||||++..++..+.......++++
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 899999999999999999876654433333443
No 179
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.83 E-value=5.6e-05 Score=77.46 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=38.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 182 (365)
.+++++++||+ ..|+......+.+.|.+ .+..+|+++++.. ....+.+|+.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~-~l~~~adrii 616 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSV-FLDNVCEYII 616 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHH-HHHHHCSEEE
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHH-HHHHhCCEEE
Confidence 36789999998 88999999999999988 3566777776644 3344555553
No 180
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.82 E-value=3.6e-05 Score=65.84 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|+||||+||||+++.++..+.
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999997654
No 181
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.79 E-value=8.8e-05 Score=72.44 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=29.7
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
+++++||||+++++......|++.+. ...++|++.+...
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecccc
Confidence 56899999999999887766665543 5678888877544
No 182
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.77 E-value=4.5e-05 Score=70.45 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|+||+|+||||+++++++.+.
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999654
No 183
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.76 E-value=2.9e-05 Score=70.93 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=25.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
++|+||||+||||++..++..+.......++++.
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 8999999999999999999876443333344443
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.72 E-value=0.00011 Score=62.29 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
++|+||||+||||+++.++.
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999988
No 185
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.71 E-value=3.5e-05 Score=78.81 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=28.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHH-HHHhhhc--CceeEEEEecCCC
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLR-RTMEKYS--ASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll-~~le~~~--~~~~~Il~t~~~~ 171 (365)
.+++++++||+ ..+++.....+. .+++... .+..+|++|++.+
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 35689999998 678876655555 4555432 3566777766644
No 186
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.71 E-value=3.6e-05 Score=68.80 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|.||||+||||+++.++..+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998654
No 187
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.71 E-value=0.00014 Score=64.96 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
++|+||||+|||+++..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 799999999999999999875
No 188
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.70 E-value=5.6e-05 Score=75.98 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+||+|+||||+++.++...
T Consensus 579 ~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 579 VLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHhhh
Confidence 8999999999999999999854
No 189
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.69 E-value=5.7e-05 Score=77.44 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
++|+||+|+||||+++.++.
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999854
No 190
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.63 E-value=0.00013 Score=70.09 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
...+++.+...+..|.. ++|.||+|+||||+++++++. ..++.+.+.+++
T Consensus 246 ~~~~l~~l~~~v~~g~~--i~I~GptGSGKTTlL~aL~~~-i~~~~giitied 295 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFS--AIVVGETASGKTTTLNAIMMF-IPPDAKVVSIED 295 (511)
T ss_dssp CHHHHHHHHHHHHTTCC--EEEEESTTSSHHHHHHHHGGG-SCTTCCEEEEES
T ss_pred CHHHHHHHHHHHhCCCE--EEEECCCCCCHHHHHHHHHhh-CCCCCCEEEEcC
Confidence 46777888888887776 999999999999999999984 456666666654
No 191
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.63 E-value=0.0008 Score=69.17 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=34.8
Q ss_pred ccCHHHHHHHHHHHHc-CCCCeEEEECCCCCcHHHHHHHHHH
Q 017844 16 IVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 16 ig~~~~~~~l~~~l~~-~~~~~lll~Gp~G~GKTtla~~la~ 56 (365)
+|.+..++.|..++.. ...+.+.|+||.|+||||+|+.+++
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 8999999999998876 3333499999999999999999885
No 192
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.61 E-value=0.0012 Score=63.59 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=50.2
Q ss_pred ceEEEEeCCCCCC----HHHHHHHHHHHhhh-cCceeEEEEecCCC--cccHHHhccce-eEEecCCCHHHHHHHHH
Q 017844 131 FKVLVLNEVDKLS----REAQHSLRRTMEKY-SASCRLILCCNSSS--KVTEAIRSRCL-NIRINSPTEEQIVKVLE 199 (365)
Q Consensus 131 ~~vliiDE~~~L~----~~~~~~Ll~~le~~-~~~~~~Il~t~~~~--~l~~~l~sR~~-~i~~~~~~~~~~~~iL~ 199 (365)
+-++||||++.+. .+....|.++..+- ...+.+|++|..+. .+...+++-|. .+.|...+..+...+|.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 4689999998663 34445555555543 34577888888877 67788888885 78898888888887774
No 193
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.57 E-value=0.00014 Score=60.49 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.+++||.|+||||.+..++....
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 89999999999999888877664
No 194
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.57 E-value=6.6e-05 Score=76.92 Aligned_cols=41 Identities=20% Similarity=0.414 Sum_probs=33.4
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.+++++|+||+ ..|+......+.+.|.+. ...+|++|++.+
T Consensus 918 ~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e 959 (986)
T 2iw3_A 918 QRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAE 959 (986)
T ss_dssp TCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHH
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHH
Confidence 47899999999 789999999999999876 346777777644
No 195
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.57 E-value=0.00017 Score=71.07 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=29.1
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
+.+++||||+++++......|++.+ +.+.++|++.+...
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~~Q 300 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRDQ 300 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECTTS
T ss_pred CCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcchhh
Confidence 5689999999999876655555544 55788888887654
No 196
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.56 E-value=0.00018 Score=65.83 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|+||||+||||+++.++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999864
No 197
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.56 E-value=0.00057 Score=65.31 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=45.5
Q ss_pred eEEEEeCCCCCCHH----HHHHHHHHHhhhc-CceeEEEEecCCC--cccHHHhccce-eEEecCCCHHHHHHHHH
Q 017844 132 KVLVLNEVDKLSRE----AQHSLRRTMEKYS-ASCRLILCCNSSS--KVTEAIRSRCL-NIRINSPTEEQIVKVLE 199 (365)
Q Consensus 132 ~vliiDE~~~L~~~----~~~~Ll~~le~~~-~~~~~Il~t~~~~--~l~~~l~sR~~-~i~~~~~~~~~~~~iL~ 199 (365)
-+++|||+..+... ..+.+.++..... ..+.+|++|..+. .+...+++.+. .+.|.-.+..+...++.
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 48999999654332 2223333333322 3677888888877 47777888774 78898888888887775
No 198
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.52 E-value=0.00011 Score=80.30 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=23.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVFGPG 62 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (365)
.++|+||||||||++|.+++.+.....
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G 1455 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREG 1455 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 399999999999999999988765443
No 199
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.52 E-value=0.0006 Score=56.43 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=32.6
Q ss_pred CCCceEEEEeCCC------CCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 128 KRGFKVLVLNEVD------KLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 128 ~~~~~vliiDE~~------~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.+++++||+||+. .++. +.+++.+.+.+.+.-+|+|++...
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCC
T ss_pred cCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCc
Confidence 4578999999983 3443 357888888888999999999876
No 200
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.51 E-value=0.00018 Score=61.90 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+||||+||||+++.++...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 8999999999999999999863
No 201
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.51 E-value=0.0012 Score=55.90 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPG 62 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~ 62 (365)
+++.|++|+||||++-.++..+...+
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 99999999999999999998775443
No 202
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.50 E-value=0.00016 Score=59.89 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
++|.||+|+||||+++.+++
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 78999999999999999987
No 203
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.47 E-value=0.00084 Score=60.02 Aligned_cols=35 Identities=31% Similarity=0.250 Sum_probs=28.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~ 72 (365)
+.|.||+|+||||+++.+++.+ .+..+.+.+.+.+
T Consensus 105 i~lvG~nGsGKTTll~~Lagll-~~~~g~V~l~g~D 139 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYY-QNLGKKVMFCAGD 139 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeec
Confidence 8999999999999999999955 4566666666544
No 204
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.44 E-value=0.00016 Score=73.20 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+||+|+||||+++.++...
T Consensus 610 ~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 610 LIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 8999999999999999999853
No 205
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.44 E-value=0.0012 Score=57.66 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.++|.|+||+||||+++.++..+.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998753
No 206
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.44 E-value=0.00061 Score=58.66 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (365)
+.....+..+++.+ .++++||+|+|||.++..++..+
T Consensus 96 ~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 96 DYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 44444455554332 38999999999999998887754
No 207
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.44 E-value=0.00022 Score=63.51 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=24.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC--CCccceecc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVEN 70 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~--~~~~i~~~~ 70 (365)
++++||||+||||++..++...... ....++++.
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 8999999999999988777665432 333344444
No 208
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.42 E-value=0.0003 Score=64.59 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~ 61 (365)
++|+||||+|||+++..++......
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~ 101 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKA 101 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHC
Confidence 8999999999999999988766433
No 209
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.41 E-value=0.00014 Score=66.05 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.+++.+...+..|..++++|.||+|+||||+++++++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4455566666677777799999999999999999999764
No 210
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.38 E-value=0.00012 Score=67.04 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=25.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
++|+||||+||||++..++..........++++.
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 8999999999999999998876544333444443
No 211
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.37 E-value=0.001 Score=60.16 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=27.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
+.|.||+|+||||+++.+++.+ .+..+.+.+.+.
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l-~~~~g~V~l~g~ 165 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWL-KNHGFSVVIAAS 165 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HhcCCEEEEEee
Confidence 8999999999999999999955 455566655553
No 212
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.34 E-value=0.00019 Score=60.10 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|.||+|+||||+++.+++.+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 49999999999999999999866
No 213
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.32 E-value=0.00066 Score=70.48 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMAL 54 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~l 54 (365)
++|+||+|+||||+++.+
T Consensus 792 ~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 792 VLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHH
Confidence 899999999999999999
No 214
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.00012 Score=61.14 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (365)
+.+...+..+. .++|.||+|+||||+++.+++.+
T Consensus 16 ~~~~~~~~~~~--~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 16 ENLYFQSNAMV--RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------CCC--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceeEecCCCC--EEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444443333 49999999999999999999976
No 215
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.30 E-value=0.0012 Score=58.85 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecCC-CHHHHHHHHHHHHHHcCC--------CCCHHHHHHH
Q 017844 147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP-TEEQIVKVLEFIAKKEGL--------QLPSGFATRL 217 (365)
Q Consensus 147 ~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~-~~~~~~~iL~~~~~~~~~--------~i~~~~~~~i 217 (365)
.....+.+++......+.+++-...-...++..- +.+.+. ...++++.+...+...|. .++|+....
T Consensus 78 ~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g---~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~- 153 (322)
T 3exa_A 78 QDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQ---FNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAA- 153 (322)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHT---CCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTT-
T ss_pred HHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcC---CcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhh-
Confidence 3444555555432333333333333233444333 245444 344677777776666553 234443322
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCC
Q 017844 218 AEKSNRSLRRAILSFETCRVQQY 240 (365)
Q Consensus 218 ~~~~~g~lr~ai~~l~~~~~~~~ 240 (365)
....|.++.+..|+-....+.
T Consensus 154 --i~pnd~~Ri~RALEV~~~TG~ 174 (322)
T 3exa_A 154 --IHPNNYRRVIRALEIIKLTGK 174 (322)
T ss_dssp --SCTTCHHHHHHHHHHHHHTC-
T ss_pred --cCcccHHHHHHHHHHHHHHCC
Confidence 246899999999997765554
No 216
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.30 E-value=0.00026 Score=68.47 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|.||+|+||||+++.++....
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998654
No 217
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.29 E-value=0.0013 Score=61.64 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
+++.||+|+||||++..+|..+..
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999987643
No 218
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.29 E-value=0.00027 Score=59.53 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcC-CCCe-EEEECCCCCcHHHHHHHHHHHhc
Q 017844 21 IAQNLKKLVTEQ-DCPH-LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 21 ~~~~l~~~l~~~-~~~~-lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.+.+...+... ..+. +.|.||+|+||||+++.+++.+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444444444332 2222 89999999999999999999764
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.28 E-value=0.002 Score=60.30 Aligned_cols=26 Identities=42% Similarity=0.540 Sum_probs=23.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPG 62 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~ 62 (365)
++++|++|+||||++..+|..+....
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999998776543
No 220
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.28 E-value=0.0015 Score=55.96 Aligned_cols=21 Identities=24% Similarity=0.467 Sum_probs=17.2
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~ 56 (365)
.+++.||+|+||||++..+.-
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHHh
Confidence 389999999999987766543
No 221
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.25 E-value=0.00011 Score=60.78 Aligned_cols=31 Identities=48% Similarity=0.739 Sum_probs=24.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
++|.||||+||||+++.+++. +..+.+.+++
T Consensus 12 i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~ 42 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANL---PGVPKVHFHS 42 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTC---SSSCEEEECT
T ss_pred EEEECCCCCCHHHHHHHHHhc---cCCCeEEEcc
Confidence 899999999999999999884 3334444444
No 222
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.24 E-value=0.00017 Score=58.67 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+||+|+||||+++.+++.+
T Consensus 7 i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999965
No 223
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.23 E-value=0.00067 Score=56.98 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=26.9
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
++++|+|||++.++++..+. +..+.+ .+..+|++.-+.+
T Consensus 101 ~~dvViIDEaQF~~~~~V~~-l~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEV-VQVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHH-HHHHHH--TTCEEEEEECSBC
T ss_pred CCCEEEEECcccCCHHHHHH-HHHHhh--CCCEEEEEecccc
Confidence 46899999999998776643 444332 2677888877443
No 224
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.21 E-value=0.00018 Score=58.85 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+|++|+||||+++.++..+
T Consensus 6 i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999976
No 225
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.21 E-value=0.00014 Score=63.07 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (365)
...+++.+...+..+.. +.|.||+|+||||+++.+++.+
T Consensus 11 ~~~~l~~isl~i~~g~i--igI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFL--IGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ------------CCSEE--EEEECSTTSSHHHHHHHHHHHH
T ss_pred CceeecceeccCCCCEE--EEEECCCCCCHHHHHHHHHHHh
Confidence 34455555555544443 8999999999999999999965
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.21 E-value=0.00042 Score=65.67 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=26.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
++|.||+|+||||+++.|++.+ .+..+.+.+.+
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g 328 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAA 328 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEC
T ss_pred EEEECCCcccHHHHHHHHHHHh-hhcCCeEEEec
Confidence 8999999999999999999965 44556666543
No 227
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.19 E-value=0.00028 Score=58.05 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Q 017844 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (365)
+.++|+||+|+||||+++.+++.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999977
No 228
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.18 E-value=0.00023 Score=60.52 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCcccee
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV 68 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~ 68 (365)
++.+...+..|.. +.|.||+|+||||+++.+++.+ + +.+.+
T Consensus 13 l~~isl~i~~G~~--~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~ 53 (218)
T 1z6g_A 13 GLVPRGSMNNIYP--LVICGPSGVGKGTLIKKLLNEF--P--NYFYF 53 (218)
T ss_dssp ---------CCCC--EEEECSTTSSHHHHHHHHHHHS--T--TTEEE
T ss_pred ccCCceecCCCCE--EEEECCCCCCHHHHHHHHHhhC--C--CcEEE
Confidence 4455556666766 9999999999999999999954 3 44544
No 229
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.18 E-value=0.00022 Score=57.83 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|.||+|+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 230
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.17 E-value=0.0011 Score=59.14 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.++|++|+||||++..+|..+.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78889999999999999999664
No 231
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.15 E-value=0.0011 Score=66.19 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=31.4
Q ss_pred eEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844 132 KVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS 171 (365)
Q Consensus 132 ~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~ 171 (365)
+++++||+ ..|++.....+.+++.+.. .+..+|+++++.+
T Consensus 224 ~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 224 VLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp CEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 49999998 7899988888888887753 3467777877754
No 232
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.13 E-value=0.00039 Score=58.10 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.|.||+|+||||+++.+++.+.
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999774
No 233
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.13 E-value=0.00054 Score=56.60 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.0
Q ss_pred EEEECCCCCcHH-HHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKK-TLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKT-tla~~la~~l~~ 60 (365)
++++||.|+||| .|++++.+....
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc
Confidence 899999999999 788888775543
No 234
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.13 E-value=0.0008 Score=62.86 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=37.3
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844 10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (365)
Q Consensus 10 ~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~ 69 (365)
-+++++--.......++..+. .....++|+||+|+||||+++++++.+. +..+.+.+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~-~~~g~I~~~ 201 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELN-SSERNILTV 201 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHC-CTTSCEEEE
T ss_pred CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEEe
Confidence 345555444444555655543 2222389999999999999999999653 444444443
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.12 E-value=0.00024 Score=59.83 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=22.8
Q ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (365)
.+..|.. +.|.||+|+||||+++++++.+
T Consensus 16 ~i~~Gei--~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRV--VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCE--EEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCE--EEEECCCCCCHHHHHHHHHhhC
Confidence 4455555 8999999999999999999954
No 236
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.10 E-value=0.00036 Score=62.25 Aligned_cols=36 Identities=31% Similarity=0.580 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (365)
+++.+...+..|.. +.|+||+|+||||++++|++.+
T Consensus 115 vL~~vsl~i~~Ge~--vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNC--LAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSE--EEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCE--EEEECCCCCcHHHHHHHHhhhc
Confidence 34444444444544 9999999999999999999965
No 237
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.10 E-value=0.024 Score=47.59 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCceEEEEeCCCCCC--HHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhc
Q 017844 129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179 (365)
Q Consensus 129 ~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~s 179 (365)
.+.+++|+||+|.+. ......+..++...+.+..+++.|.....-...+.+
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHH
Confidence 456899999999773 344455566666656567777777666543333433
No 238
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.09 E-value=0.00041 Score=60.16 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=31.3
Q ss_pred cCHHHHHHHHHHHHc---CCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844 17 VHQDIAQNLKKLVTE---QDCPHLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 17 g~~~~~~~l~~~l~~---~~~~~lll~Gp~G~GKTtla~~la~~l 58 (365)
+...+++.+...+.. +.. +.|+|++|+||||+++.+++.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~--i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRS--MYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCC--EEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCE--EEEECCCCCCHHHHHHHHHHhc
Confidence 444566777666666 655 9999999999999999999976
No 239
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.09 E-value=0.00076 Score=62.65 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|+||||+||||+++.++...
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 8999999999999999876433
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.08 E-value=0.00032 Score=57.64 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|.||+|+||||+++.+++.+
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999854
No 241
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.06 E-value=0.00036 Score=56.96 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
++|.|+||+||||+++.+++
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 89999999999999999987
No 242
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.06 E-value=0.00039 Score=56.92 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|+|++|+||||+++.++..+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999876
No 243
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.06 E-value=0.00035 Score=57.00 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|.||+|+||||+++.+++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999976
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.05 E-value=0.00039 Score=58.12 Aligned_cols=22 Identities=36% Similarity=0.767 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|.||+|+||||+++.+++.+
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999854
No 245
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.05 E-value=0.00045 Score=55.84 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q 017844 35 PHLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.+++|+|++|+||||+++.++..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999999773
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.04 E-value=0.00038 Score=57.50 Aligned_cols=22 Identities=36% Similarity=0.754 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|.||+|+||||+++.+++.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999854
No 247
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.02 E-value=0.00034 Score=58.49 Aligned_cols=21 Identities=33% Similarity=0.755 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+.|.||+|+||||+++.+++.
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 899999999999999999985
No 248
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.01 E-value=0.00038 Score=58.18 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|+|++|+||||+++.+++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999999876
No 249
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.01 E-value=0.00081 Score=72.67 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++++||||||||++|++++.+-.
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHhh
Confidence 89999999999999999987653
No 250
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.00 E-value=0.00042 Score=56.45 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+||+|+||||+++.+++.+
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHhh
Confidence 8999999999999999999865
No 251
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.00 E-value=0.00042 Score=57.15 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|.|++|+||||+++.++..+.
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999764
No 252
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.99 E-value=0.00059 Score=63.55 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCC-----------------C-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 19 QDIAQNLKKLVTEQD-----------------C-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 19 ~~~~~~l~~~l~~~~-----------------~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
+.+++.+...+..|. . ..+.|.||+|+||||+++++++ +..+..+.+.+++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G-l~~p~~GsI~~~g 104 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG-IGNEEEGAAKTGV 104 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT-CCTTSTTSCCCCC
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC-CCCccCceEEECC
Confidence 556777777777776 1 1389999999999999999998 5556666555544
No 253
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.98 E-value=0.0039 Score=55.68 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++++||+|+||||++..+|..+.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHH
Confidence 89999999999999999998664
No 254
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.98 E-value=0.0031 Score=58.86 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|.||+|+|||||++.+++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7999999999999999998744
No 255
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.98 E-value=0.0066 Score=50.49 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=28.3
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.+++|+||+|.+... ....+..++...+.+..+++.|.....
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPS 187 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCH
T ss_pred hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCH
Confidence 45689999999976432 233445555555556677777766654
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.96 E-value=0.0025 Score=56.77 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|.||+|+||||++..++..+.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 257
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.95 E-value=0.00048 Score=56.61 Aligned_cols=22 Identities=41% Similarity=0.844 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+|++|+||||+++.+++.+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 258
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.95 E-value=0.00042 Score=57.19 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|.|++|+||||+++.+++.+.
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999774
No 259
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.94 E-value=0.00051 Score=61.00 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.||||+||||+++.++..+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999865
No 260
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.94 E-value=0.00038 Score=60.61 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.|+||+||||+++.+++.+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999876
No 261
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.93 E-value=0.00058 Score=56.09 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|+|++|+||||+++.++..+.
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999763
No 262
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.92 E-value=0.0094 Score=49.98 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=22.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844 32 QDCPHLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 32 ~~~~~lll~Gp~G~GKTtla~~la~~l 58 (365)
...+++++.|++|+||||++..+++..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344569999999999999999998754
No 263
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.92 E-value=0.0056 Score=61.92 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.||+|+||||++..++..
T Consensus 112 vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 112 MVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999977776543
No 264
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.92 E-value=0.00064 Score=55.95 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=21.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 017844 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (365)
..++|+|++|+||||+++.++..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34999999999999999999986
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.92 E-value=0.00043 Score=57.91 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|.||+|+||||+++.+++.+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 8999999999999999999854
No 266
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.91 E-value=0.001 Score=57.38 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|+||+|+||||+++.++..+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999999876
No 267
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.91 E-value=0.0036 Score=53.07 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=27.3
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (365)
Q Consensus 130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~ 169 (365)
++++|+|||++.+.. ...+.+.+.+ .+..+|+++-+
T Consensus 90 ~~dvViIDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp TCSEEEESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred cCCEEEEEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 358999999999874 5566777776 36778888776
No 268
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.91 E-value=0.00059 Score=59.36 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|.||+|+||||+++.+++.+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhcCC
Confidence 78999999999999999999763
No 269
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.91 E-value=0.00048 Score=56.94 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.|++|+||||+++.++..+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999876
No 270
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.90 E-value=0.0013 Score=55.02 Aligned_cols=38 Identities=26% Similarity=0.130 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcC--CCCe-EEEECCCCCcHHHHHHHHHHHh
Q 017844 21 IAQNLKKLVTEQ--DCPH-LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 21 ~~~~l~~~l~~~--~~~~-lll~Gp~G~GKTtla~~la~~l 58 (365)
.++.+...+... ..+. +.++||+|+||||+++.+++.+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444455545432 2223 8999999999999999999865
No 271
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.90 E-value=0.00088 Score=60.09 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=25.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC-CCCcccee
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKV 68 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~-~~~~~i~~ 68 (365)
+.|.||+|+||||+++.+++.+.. +..+.+.+
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 899999999999999999985531 55555555
No 272
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.88 E-value=0.00071 Score=57.36 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.++|.|++|+||||+++.++..+.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999763
No 273
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.88 E-value=0.00065 Score=56.95 Aligned_cols=22 Identities=45% Similarity=0.764 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.||+|+||||+++.++..+
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999865
No 274
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.87 E-value=0.00059 Score=59.03 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|.||||+||||+++.+++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999999765
No 275
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.86 E-value=0.00069 Score=57.20 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+||+|+||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 276
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.85 E-value=0.00068 Score=54.95 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+|++|+||||+++.++..+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999976
No 277
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.85 E-value=0.00075 Score=62.14 Aligned_cols=22 Identities=55% Similarity=0.700 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+||+|+||||+++++++.+
T Consensus 172 i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 172 WLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 9999999999999999999854
No 278
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.85 E-value=0.00059 Score=55.21 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.||+|+||||+++.+ ..+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEECCCCCCHHHHHHHH-HHC
Confidence 889999999999999999 544
No 279
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.84 E-value=0.00053 Score=61.27 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=27.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
+.|.||+|+||||+++.+++.+. +..+.+.+.+.
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~ 136 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAG 136 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEee
Confidence 89999999999999999999653 45566666553
No 280
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.84 E-value=0.0006 Score=57.37 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.||+|+||||+++.+++.+
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHST
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8999999999999999999854
No 281
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.83 E-value=0.00067 Score=57.70 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.+.|+||+|+||||+++.+++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999865
No 282
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.83 E-value=0.00081 Score=63.78 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=31.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~ 73 (365)
.+.|.||+|+||||+++++++ +..++.+.+.+++..+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT-ALIPDLTLLNFRNTTE 67 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHCCCTTTCCCCCTTS
T ss_pred eEEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEEc
Confidence 389999999999999999999 5677778888777654
No 283
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.83 E-value=0.00067 Score=57.30 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+||+|+||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998865
No 284
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.83 E-value=0.00078 Score=56.20 Aligned_cols=23 Identities=39% Similarity=0.704 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|+|++|+||||+++.++..+.
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998763
No 285
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.83 E-value=0.0033 Score=68.93 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=22.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPG 62 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~ 62 (365)
++++||||+||||++..++.+.....
T Consensus 1084 vll~G~~GtGKT~la~~~~~ea~k~G 1109 (2050)
T 3cmu_A 1084 VEIYGPESSGKTTLTLQVIAAAQREG 1109 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999988765443
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.81 E-value=0.0008 Score=55.70 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|.|++|+||||+++.+++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999999876
No 287
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.80 E-value=0.00076 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.|++|+||||+++.++..+
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 288
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.80 E-value=0.0017 Score=57.66 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.|.||+|+||||+++.+++.+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 89999999999999999998764
No 289
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.80 E-value=0.00064 Score=57.17 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|.||+|+||||+++.+++.+
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999965
No 290
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.79 E-value=0.00078 Score=56.50 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
++|.|++|+||||+++.++..+..
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999997743
No 291
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.78 E-value=0.00079 Score=56.09 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|.|++|+||||+++.+++.+.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCccCHHHHHHHHHHhcC
Confidence 78999999999999999999763
No 292
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.77 E-value=0.00099 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|+|++|+||||+++.++..+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999763
No 293
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.76 E-value=0.00097 Score=54.95 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+|++|+||||+++.++..+
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 294
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.75 E-value=0.005 Score=57.61 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++++|+||+||||+++.++..+
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999998754
No 295
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.74 E-value=0.0023 Score=63.50 Aligned_cols=42 Identities=19% Similarity=0.430 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q 017844 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (365)
++...+++..++....+ .+|.||||||||+++-.+...+...
T Consensus 191 N~~Q~~AV~~al~~~~~--~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 191 DTSQKEAVLFALSQKEL--AIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp CHHHHHHHHHHHHCSSE--EEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCc--eEEECCCCCCHHHHHHHHHHHHHhC
Confidence 66777778877765433 8999999999998776665555543
No 296
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.74 E-value=0.019 Score=50.99 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=29.3
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.+++||||+|.+.. .....+..++...+.+..+++.|.....
T Consensus 234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred hhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCH
Confidence 3557999999998654 3334455555555667777777776653
No 297
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.74 E-value=0.0053 Score=58.14 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+++.|+||+||||++..++..+.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999988664
No 298
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.73 E-value=0.00093 Score=56.71 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.++|.||+|+||||+++.++..+.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999773
No 299
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.73 E-value=0.00059 Score=55.88 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=17.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.++|+|++|+||||+++.+++.+.
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999998663
No 300
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.72 E-value=0.00081 Score=55.80 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.|++|+||||+++.+++.+
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999976
No 301
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.72 E-value=0.00082 Score=61.25 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
..+++.+ .-+..|.. +.|.||+|+||||+++.|++. ..++.+.+.+.+
T Consensus 59 ~~ald~l-l~i~~Gq~--~gIiG~nGaGKTTLl~~I~g~-~~~~~g~i~~~G 106 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQR--IGIFAGSGVGKSTLLGMICNG-ASADIIVLALIG 106 (347)
T ss_dssp CHHHHHH-SCEETTCE--EEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEES
T ss_pred CEEEEee-eeecCCCE--EEEECCCCCCHHHHHHHHhcC-CCCCEEEEEEec
Confidence 3556555 44555555 899999999999999999995 455555444433
No 302
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.72 E-value=0.00094 Score=56.10 Aligned_cols=22 Identities=45% Similarity=0.827 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.||||+||+|.++.|++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999976
No 303
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.69 E-value=0.0013 Score=56.38 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|.|++|+||||+++.++..+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999976
No 304
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.69 E-value=0.013 Score=49.45 Aligned_cols=44 Identities=11% Similarity=0.295 Sum_probs=28.5
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.+++|+||+|.+... ....+..++...+.+..+++.|.....
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 45689999999976432 233455555555556777777766653
No 305
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.68 E-value=0.012 Score=53.89 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 128 KRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 128 ~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
..+.+++|+||+|.+.. .....+...+...+.+..+++.|..+.
T Consensus 143 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 143 LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFA 188 (395)
T ss_dssp CTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred cccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 34568999999997654 223344445555555677777777665
No 306
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.67 E-value=0.00096 Score=62.78 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
..+++.+ .-+..|.. +.|.||+|+||||+++.|++. ..++.+.+.+.+.
T Consensus 145 ~~vld~v-l~i~~Gq~--~~IvG~sGsGKSTLl~~Iag~-~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQR--MGLFAGSGVGKSVLLGMMARY-TRADVIVVGLIGE 193 (438)
T ss_dssp CHHHHHH-SCCBTTCE--EEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESC
T ss_pred ceEEeee-EEecCCCE--EEEECCCCCCHHHHHHHHhcc-cCCCeEEEEEece
Confidence 3455555 44445544 899999999999999999994 4666666666554
No 307
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.67 E-value=0.0014 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.||+|+||||+++.+++..
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8999999999999999999853
No 308
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.67 E-value=0.001 Score=54.83 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999976
No 309
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.67 E-value=0.0013 Score=53.74 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+|++|+||||+++.++..+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999976
No 310
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.67 E-value=0.0011 Score=54.98 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|+|++|+||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999876
No 311
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.67 E-value=0.0011 Score=54.54 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|.|++|+||||+++.++..+.
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999774
No 312
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.67 E-value=0.0012 Score=71.31 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
++|+||||+||||++..++..+..
T Consensus 735 VlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 735 VEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 313
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.66 E-value=0.00099 Score=56.40 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|.|++|+||||+++.++..+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999977
No 314
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.66 E-value=0.015 Score=51.04 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=27.6
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.+++|+||+|.+... .+..++........+++.|..+.+
T Consensus 224 ~~~~~vIiDEaH~~~~~---~~~~il~~~~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 224 SQFGMMMNDECHLATGK---SISSIISGLNNCMFKFGLSGSLRD 264 (282)
T ss_dssp GGEEEEEEETGGGCCHH---HHHHHTTTCTTCCEEEEECSSCCT
T ss_pred hhCCEEEEECCccCCcc---cHHHHHHHhhcCCeEEEEeCCCCC
Confidence 45689999999999865 344555554445666666666543
No 315
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.64 E-value=0.002 Score=57.84 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.|.||+|+||||+++.+++.+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999998653
No 316
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.64 E-value=0.00088 Score=57.11 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|.|++|+||||+++.++..+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999865
No 317
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.64 E-value=0.00092 Score=61.10 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=27.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
+.|.||+|+||||+++.+++.+ .+..+.+.+.+.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~ 193 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAG 193 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECC
T ss_pred EEEEcCCCChHHHHHHHHHhhc-cccCCEEEEecc
Confidence 8999999999999999999965 445566666553
No 318
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.63 E-value=0.0012 Score=55.13 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.++|+|++|+||||+++.+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999865
No 319
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.63 E-value=0.001 Score=55.89 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
++|+|++|+||||+++.+++.+..
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999997643
No 320
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.63 E-value=0.0012 Score=55.84 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.||||+||+|.++.|++.+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999976
No 321
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.63 E-value=0.02 Score=51.38 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~ 61 (365)
+++.|+||+|||+++..++......
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~ 95 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDN 95 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999998765443
No 322
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.62 E-value=0.0012 Score=54.43 Aligned_cols=22 Identities=36% Similarity=0.754 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+||+|+||||+++.+....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999987753
No 323
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.62 E-value=0.00089 Score=56.07 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
+.|+||+|+||||+++.+++
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 324
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.62 E-value=0.00096 Score=55.73 Aligned_cols=21 Identities=24% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|+|++|+||||+++.+++ +
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEECCCCcCHHHHHHHHHH-C
Confidence 78999999999999999998 5
No 325
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.62 E-value=0.00048 Score=58.95 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=14.6
Q ss_pred EEEECCCCCcHHHHHHHHH-HH
Q 017844 37 LLFYGPPGSGKKTLIMALL-RQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la-~~ 57 (365)
+.|+||+|+||||+++.++ +.
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEECSCC----CHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 8999999999999999999 74
No 326
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.00068 Score=64.20 Aligned_cols=42 Identities=14% Similarity=0.053 Sum_probs=29.3
Q ss_pred HHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCc-c-ceecc
Q 017844 26 KKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-K-VKVEN 70 (365)
Q Consensus 26 ~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~-~-i~~~~ 70 (365)
...+..|.. +.|.||+|+||||++++|++. ..+..+ . +.+++
T Consensus 132 sl~i~~Ge~--v~IvGpnGsGKSTLlr~L~Gl-~~p~~G~~pI~vdg 175 (460)
T 2npi_A 132 RMSNFEGPR--VVIVGGSQTGKTSLSRTLCSY-ALKFNAYQPLYINL 175 (460)
T ss_dssp HHHSSSCCC--EEEEESTTSSHHHHHHHHHHT-THHHHCCCCEEEEC
T ss_pred ceEeCCCCE--EEEECCCCCCHHHHHHHHhCc-ccccCCceeEEEcC
Confidence 333444544 999999999999999999994 334444 4 55443
No 327
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.61 E-value=0.0092 Score=53.62 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
++++||+|+||||++..+|..+..
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999997643
No 328
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.61 E-value=0.0074 Score=60.10 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=33.2
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS 171 (365)
Q Consensus 130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~ 171 (365)
+++++++||+ ..|++.....+++++.+.. .+..+|+++++.+
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 607 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3579999998 7899999988888887764 3566777777765
No 329
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.60 E-value=0.0012 Score=56.07 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.|++|+||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 330
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.58 E-value=0.0011 Score=55.86 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.|++|+||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 331
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.56 E-value=0.0025 Score=53.61 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.++|.|++|+||||+++.+++.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 389999999999999999999764
No 332
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.56 E-value=0.0019 Score=54.14 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=27.7
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCC
Q 017844 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~ 170 (365)
.+..+|+|||++.++++....+.++. + .+..+|+..-+.
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la-~--~gi~Vi~~GLd~ 138 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLS-A--DGHRVIVAGLDM 138 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHH-H--TTCEEEEEEESB
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHH-H--CCCEEEEeeccc
Confidence 35689999999999987777666665 3 256666665443
No 333
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.55 E-value=0.0036 Score=63.41 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=33.1
Q ss_pred ceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCCc
Q 017844 131 FKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSK 172 (365)
Q Consensus 131 ~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~~ 172 (365)
++++|+||+ ..|+......+++.|.+.. ....+|+++++.+.
T Consensus 752 p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~ 795 (842)
T 2vf7_A 752 GTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQV 795 (842)
T ss_dssp CEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 699999999 7899999999988888763 34567777776553
No 334
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.55 E-value=0.0066 Score=59.46 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
|..++..+...+..+. .++++.+|.|+|||..+-.++..+..
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHh
Confidence 4555555555554443 34899999999999998777776643
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.54 E-value=0.0012 Score=55.41 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|+|++|+||||+++.++..+.
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 336
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.54 E-value=0.00055 Score=58.38 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=23.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~ 71 (365)
+.|.||+|+||||++++|+.. ..+..+.+.+++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~-~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA-LIPDLTLLHFRNT 63 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH-HSCCTTTC-----
T ss_pred EEEECCCCCCHHHHHHHHhcc-cccCCCeEEECCE
Confidence 568899999999999999985 4555666655543
No 337
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.54 E-value=0.032 Score=47.59 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.++|.|++|+||||++..+.+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 3999999999999999998763
No 338
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.53 E-value=0.0016 Score=54.96 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=33.5
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (365)
++.+....++......+.+.+++.|++|+||||++..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 455666677776666666679999999999999999998875
No 339
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.52 E-value=0.00077 Score=61.25 Aligned_cols=34 Identities=35% Similarity=0.357 Sum_probs=26.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~ 70 (365)
.+.|.||||+||||+++.+++.+ .+..+.+.+.+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~-~~~~g~v~i~~ 90 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL-TAAGHKVAVLA 90 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhh-hhCCCEEEEEE
Confidence 38999999999999999999854 34445555544
No 340
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.52 E-value=0.0012 Score=54.97 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.|++|+||||+++.+++.+
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999865
No 341
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.48 E-value=0.0084 Score=49.87 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=20.5
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHH
Q 017844 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~ 57 (365)
+++...+.+.......+.-.+++.|++|+||||+++.+...
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34455555544444443334999999999999999988763
No 342
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.48 E-value=0.0016 Score=58.48 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.|.||+|+||||+++.|++.+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 89999999999999999999654
No 343
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.48 E-value=0.0015 Score=56.64 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.+.|.||+|+||||+++.+++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999765
No 344
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.48 E-value=0.0099 Score=52.96 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.||+|+|||||++.+++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999998764
No 345
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.45 E-value=0.0018 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.+|+||+|+||||++++|...+.
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 79999999999999999988654
No 346
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.43 E-value=0.022 Score=48.44 Aligned_cols=44 Identities=18% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.+++|+||+|.+... ....+..+++..+....+++.|.....
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTK 214 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCH
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCH
Confidence 45679999999976432 234455666666656666766666553
No 347
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.43 E-value=0.0019 Score=55.23 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.+.|.||+|+||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 348
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.42 E-value=0.0039 Score=58.30 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=27.2
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 131 ~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.+++||||+.+++......++..+. ...+|++.....
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~~Q 271 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDTQQ 271 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECTTS
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCccc
Confidence 5899999999999887776666543 266777776543
No 349
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.41 E-value=0.025 Score=48.03 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=26.1
Q ss_pred CCceEEEEeCCCCCCHH--HHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLSRE--AQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~--~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.+.+++|+||+|.+... ....+..++...+....+++.|....
T Consensus 165 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 165 GSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYP 209 (230)
T ss_dssp GGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred ccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccC
Confidence 34579999999976322 23344445555555666666665554
No 350
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.39 E-value=0.0018 Score=55.67 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=24.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~ 69 (365)
++++||||+||||++..++..+.......++++
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 899999999999999888776544433334433
No 351
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.36 E-value=0.0038 Score=52.82 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
++..+.++......+.+.+++.|++|+||||++..++.....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 444566666666565666899999999999999999987643
No 352
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.33 E-value=0.0051 Score=49.38 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
+++.|++|+||||+++.+.+
T Consensus 7 i~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCccHHHHHHHHhc
Confidence 89999999999999998865
No 353
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.32 E-value=0.0011 Score=61.88 Aligned_cols=36 Identities=33% Similarity=0.478 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHH
Q 017844 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~ 57 (365)
++.+...+..|..+++.|.||+|+|||||+++|++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 667777777777766899999999999999999885
No 354
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.32 E-value=0.036 Score=51.17 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=27.4
Q ss_pred CCceEEEEeCCCCCC--HHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.+.+++|+||+|.+. ......+..++...+.+..+++.|..+.
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 211 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 211 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecC
Confidence 456899999999653 2233344445555556677777777655
No 355
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.31 E-value=0.0023 Score=55.54 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.|+|++|+||||+++.++..+.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 89999999999999999998663
No 356
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.00064 Score=55.33 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=25.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCC--Cccceecc
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVEN 70 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~--~~~i~~~~ 70 (365)
.+.|.|++|+||||+++.+++.+.... .+.+.+++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 378999999999999999999653221 44455544
No 357
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.31 E-value=0.027 Score=50.97 Aligned_cols=43 Identities=14% Similarity=0.330 Sum_probs=28.4
Q ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~-~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.+.+++|+||+|.+.. .....+...+...+....+++.|..+.
T Consensus 146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 189 (367)
T 1hv8_A 146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMP 189 (367)
T ss_dssp TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccC
Confidence 4568999999987632 223445556655556677777777665
No 358
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.30 E-value=0.0024 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.+.|+|++|+||||+++.+++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48899999999999999999976
No 359
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.29 E-value=0.0028 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|+|++|+||||+++.++..+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999999864
No 360
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.27 E-value=0.042 Score=46.38 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=28.8
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.+++|+||+|.+... ....+..++...+.+..+++.|.....
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPD 210 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCH
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCH
Confidence 45689999999976533 234455556665666777777666553
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.26 E-value=0.0034 Score=50.77 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844 34 CPHLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.+-+.|.|++|+||||++..++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 34489999999999999999998764
No 362
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.25 E-value=0.0018 Score=54.30 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.++|++|+||||+++.+++.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999998843
No 363
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.24 E-value=0.014 Score=49.81 Aligned_cols=43 Identities=19% Similarity=0.354 Sum_probs=27.9
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
...+++|+||+|.+... ....+..++...+....+++.|....
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 35689999999976432 23345555555555677777776655
No 364
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.24 E-value=0.022 Score=49.11 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=28.2
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
...+++|+||+|.+... ....+.+++...+....+++.|.....
T Consensus 185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 185 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 229 (249)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCH
T ss_pred cccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCH
Confidence 45679999999976432 233455566655556667776666553
No 365
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.22 E-value=0.041 Score=43.35 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||++..+...
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998763
No 366
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.22 E-value=0.028 Score=46.53 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=27.7
Q ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~-~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.+.+++|+||+|.+.. .....+..++...+.+..+++.|....
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence 4568999999986543 334445555555555667777766655
No 367
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.21 E-value=0.0011 Score=55.62 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999764
No 368
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.21 E-value=0.0025 Score=57.14 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+||+|+||||+++.+++.+
T Consensus 8 i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999975
No 369
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.20 E-value=0.0029 Score=54.01 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
++|.||+|+||||+++.+++.+..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 899999999999999999997743
No 370
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.19 E-value=0.0027 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.+.|+|++|+||||+++.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 3899999999999999999984
No 371
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.19 E-value=0.0038 Score=60.43 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHH--cCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844 19 QDIAQNLKKLVT--EQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 19 ~~~~~~l~~~l~--~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
.++.+.++.... -.+...+.|+|++|+||||+++++++.+..
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 455555555431 112223899999999999999999997743
No 372
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.16 E-value=0.012 Score=46.63 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998764
No 373
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.14 E-value=0.0097 Score=47.00 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+.+.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 374
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.13 E-value=0.0036 Score=49.53 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
.+|+||+|+||||++.++.-.+..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 799999999999999999876644
No 375
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.13 E-value=0.0056 Score=54.59 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=23.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCcccee
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV 68 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~ 68 (365)
+.|.||+|+||||++++++ +..+..+.+.+
T Consensus 168 ~~l~G~sG~GKSTLln~l~--~~~~~~G~i~~ 197 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT--GEELRTQEVSE 197 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH--SCCCCCSCC--
T ss_pred EEEECCCCCCHHHHHHHHH--HhhCccccccc
Confidence 7899999999999999998 55666666554
No 376
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.11 E-value=0.0022 Score=57.67 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=28.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhc-------CCCCccceecccc
Q 017844 34 CPHLLFYGPPGSGKKTLIMALLRQVF-------GPGAEKVKVENKT 72 (365)
Q Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~-------~~~~~~i~~~~~~ 72 (365)
.+-++|+|++|+||||+++.+++... .++.+.+.+++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH
Confidence 34489999999999999999998431 3455666666543
No 377
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.10 E-value=0.0035 Score=55.74 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
++|.|+||+||||+++.++..
T Consensus 5 I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999984
No 378
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.09 E-value=0.021 Score=46.36 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999874
No 379
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.07 E-value=0.12 Score=47.48 Aligned_cols=43 Identities=9% Similarity=0.250 Sum_probs=26.4
Q ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~-~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.+.+++|+||+|.+.. .....+..++...+....+++.|....
T Consensus 162 ~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~ 205 (400)
T 1s2m_A 162 SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP 205 (400)
T ss_dssp TTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCC
Confidence 4568999999996644 333444444444455566666655544
No 380
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.06 E-value=0.0071 Score=57.78 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHH--cCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844 18 HQDIAQNLKKLVT--EQDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 18 ~~~~~~~l~~~l~--~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.+++.+.++.... ......++|+|.+|+||||+++++++.|.
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3566667766652 22223499999999999999999999885
No 381
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.06 E-value=0.024 Score=47.63 Aligned_cols=44 Identities=9% Similarity=0.194 Sum_probs=27.9
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
...+++|+||+|.+... ....+..++...+.+..+++.|.....
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 34579999999976532 233455556655556667766666554
No 382
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.05 E-value=0.0042 Score=50.59 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q 017844 35 PHLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+-+.|.|++|+||||+++.+++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4489999999999999999998754
No 383
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.05 E-value=0.0035 Score=52.87 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
+.|+|++|+||||+++.++.
T Consensus 7 I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999987
No 384
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.05 E-value=0.012 Score=51.15 Aligned_cols=44 Identities=14% Similarity=0.365 Sum_probs=28.4
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.+++|+||+|.+... ....+..++...+....+++.|....+
T Consensus 200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~ 244 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 244 (262)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCH
T ss_pred ccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCH
Confidence 45689999999976543 233455555555556777777666553
No 385
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.01 E-value=0.03 Score=53.20 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=29.1
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.+++||||+|.+.. .....+..++...+.+..+|+.|..+..
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH
Confidence 4568999999996632 3334445555555667778888777664
No 386
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.00 E-value=0.018 Score=45.83 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+.+.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999774
No 387
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.99 E-value=0.25 Score=42.25 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
++|.|.+|+||||++..+.+
T Consensus 24 I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEESSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 89999999999999999875
No 388
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.98 E-value=0.0033 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPG 62 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~ 62 (365)
+.|.||+|+||||+++.|++. ..+.
T Consensus 173 ~~IvG~nGsGKSTLlk~L~gl-~~~~ 197 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAAV-FNTT 197 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHHH-TTCE
T ss_pred EEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 899999999999999999995 4443
No 389
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.98 E-value=0.018 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.+++.|++|+||||++..+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999998764
No 390
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.98 E-value=0.0029 Score=56.49 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCcccee
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV 68 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~ 68 (365)
+.|.||+|+||||+++++++ +..+..+.+.+
T Consensus 172 v~l~G~sG~GKSTll~~l~g-~~~~~~G~i~~ 202 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLNAINP-GLKLRVSEVSE 202 (301)
T ss_dssp EEEECSTTSSHHHHHHHHST-TCCCC------
T ss_pred EEEECCCCCcHHHHHHHhcc-cccccccceec
Confidence 78999999999999999988 44555555544
No 391
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.97 E-value=0.013 Score=47.78 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||++..++..
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 392
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.97 E-value=0.023 Score=48.59 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=29.2
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
.+.+++|+||+|.+... ....+..+++..+.+..+++.|.....
T Consensus 175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 219 (242)
T ss_dssp TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCH
T ss_pred ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCH
Confidence 45689999999976543 234455566666666777777666553
No 393
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.95 E-value=0.0015 Score=59.61 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|.||+|+|||||+++|++..
T Consensus 218 ~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEECCCCccHHHHHHHHhccc
Confidence 8999999999999999998743
No 394
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.95 E-value=0.047 Score=52.23 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (365)
+.....+..++.. .+.++.||.|+|||..+-.++...
T Consensus 116 ~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 116 WYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp HHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 4444445555543 348999999999999987766654
No 395
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.95 E-value=0.0038 Score=54.96 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|+||||+||||+++.++..+.
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998654
No 396
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.94 E-value=0.036 Score=52.00 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=16.7
Q ss_pred CeEEEECCCCCcHHHHH-HHHH
Q 017844 35 PHLLFYGPPGSGKKTLI-MALL 55 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla-~~la 55 (365)
.++++.||+|+|||..+ ..+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 34899999999999975 4444
No 397
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.94 E-value=0.0043 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+++.|++|+||||+++.+++..
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998843
No 398
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.93 E-value=0.029 Score=46.13 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.4
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~ 56 (365)
.+++.|++|+||||+++.+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 399999999999999987654
No 399
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.93 E-value=0.016 Score=46.88 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 21 i~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 999999999999999998863
No 400
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.92 E-value=0.027 Score=45.49 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998763
No 401
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.92 E-value=0.0055 Score=54.44 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.||+|+|||+++..+++.+
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 8899999999999999999875
No 402
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.91 E-value=0.004 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|.|++|+||||+++.+++..
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998854
No 403
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.88 E-value=0.0065 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.+.|+|++|+||||+++.+++.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999866
No 404
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.86 E-value=0.029 Score=53.27 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~ 61 (365)
+++.|.+|+||||+++.+++.+...
T Consensus 42 IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcc
Confidence 8999999999999999999987543
No 405
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.86 E-value=0.0047 Score=55.73 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.||+|+||||+++.++..+
T Consensus 10 I~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcCcHHHHHHHHHHHc
Confidence 8999999999999999999976
No 406
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.82 E-value=0.032 Score=46.41 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999999874
No 407
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.81 E-value=0.1 Score=48.95 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=28.0
Q ss_pred CCCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 128 KRGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 128 ~~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
..+..++|+||+|.+... ....+...+........+++.|..+.
T Consensus 123 ~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 123 LEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG 167 (494)
T ss_dssp TTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC
T ss_pred hhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC
Confidence 346789999999988632 34445555555444555666655554
No 408
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.77 E-value=0.004 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.||+|+|||+++..+++..
T Consensus 37 ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998753
No 409
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.76 E-value=0.14 Score=46.71 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=29.3
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 128 KRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 128 ~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
..+.+++|+||+|.+.. .....+...+...+....+++.|..+.
T Consensus 150 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 195 (391)
T 1xti_A 150 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS 195 (391)
T ss_dssp CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCC
T ss_pred ccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCC
Confidence 34668999999997753 444555666665555666777666554
No 410
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.76 E-value=0.12 Score=43.15 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=19.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHH
Q 017844 34 CPHLLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 34 ~~~lll~Gp~G~GKTtla~~la~ 56 (365)
.+.+++.|++|+||||++..+.+
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 34599999999999999998865
No 411
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.047 Score=44.57 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+.+.
T Consensus 21 i~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999874
No 412
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.74 E-value=0.0073 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.|.||||+||||.++.++..+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999763
No 413
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.74 E-value=0.032 Score=44.70 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999999764
No 414
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.72 E-value=0.008 Score=50.23 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
.+|+||+|+||||++.+|.-.+.+
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 799999999999999999877654
No 415
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.013 Score=47.91 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.+++.|++|+||||++..+.+.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999874
No 416
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.70 E-value=0.0043 Score=55.89 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
.++|.||+|+|||+++..+|+.+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 389999999999999999998763
No 417
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.69 E-value=0.0071 Score=54.52 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
++|+||||+|||+++..++.....
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~ 133 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQL 133 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHhHHHHHHHHHHhc
Confidence 899999999999999999886543
No 418
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.69 E-value=0.022 Score=46.18 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 419
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.66 E-value=0.049 Score=52.20 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=28.3
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844 129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK 172 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~~~~~Il~t~~~~~ 172 (365)
...+++|+||+|.+.. .....+..++...+.+..+|+.|..+..
T Consensus 258 ~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~ 303 (508)
T 3fho_A 258 RDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSE 303 (508)
T ss_dssp TTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCST
T ss_pred cCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCH
Confidence 4568999999997653 2233444455555556777777776653
No 420
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.66 E-value=0.051 Score=53.39 Aligned_cols=43 Identities=7% Similarity=0.119 Sum_probs=26.6
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~ 171 (365)
.+.+++||||+|.++......+..+++..+ .+..+++.|..+.
T Consensus 276 ~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~ 319 (618)
T 2whx_A 276 PNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP 319 (618)
T ss_dssp CCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCT
T ss_pred cCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCCc
Confidence 456899999999997654443333333322 4566666665543
No 421
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.023 Score=56.99 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=16.7
Q ss_pred CeEEEECCCCCcHHHHHHHH
Q 017844 35 PHLLFYGPPGSGKKTLIMAL 54 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla~~l 54 (365)
.++++.||+|+|||+.+-..
T Consensus 47 ~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHH
Confidence 34999999999999998443
No 422
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.66 E-value=0.047 Score=45.64 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999998764
No 423
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.66 E-value=0.041 Score=51.32 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~ 61 (365)
+++.|++|+||||++..++..+...
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 8889999999999999999976543
No 424
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.65 E-value=0.14 Score=41.96 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.+++.|++|+||||+++.+.+.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3999999999999999999874
No 425
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.65 E-value=0.089 Score=49.25 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~ 61 (365)
++++|++|+||||++-.+|..+...
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 8889999999999999999877543
No 426
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.60 E-value=0.013 Score=53.13 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|+||||+|||+++..++...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998864
No 427
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.58 E-value=0.041 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+.+.
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999999874
No 428
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.58 E-value=0.041 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
++|.|++|+||||+++.+...
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999888764
No 429
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.57 E-value=0.0086 Score=54.92 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=22.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGPG 62 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~ 62 (365)
.+|+||+|+||||+..+|+-.+++..
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al~g~~ 51 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFALFGNG 51 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc
Confidence 78999999999999999998776543
No 430
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.024 Score=46.53 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.+++.|++|+||||+++.+...
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999998774
No 431
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.55 E-value=0.0059 Score=53.86 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
+.|+|++|+||||+++.++.
T Consensus 78 I~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999984
No 432
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.55 E-value=0.026 Score=46.15 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+++.|++|+||||+++.+.+.-
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 8999999999999999998753
No 433
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.55 E-value=0.0078 Score=50.66 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|+|++|+||||+++.++..+
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999865
No 434
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.53 E-value=0.04 Score=44.30 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.+++.|++|+||||+++.+...
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999998763
No 435
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.53 E-value=0.0083 Score=47.37 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 017844 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (365)
+.+++.|++|+||||+++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34899999999999999999864
No 436
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.52 E-value=0.16 Score=53.68 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHH
Q 017844 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~ 56 (365)
|..++..+.....+++..+.+++||.|+|||..+...+-
T Consensus 608 Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~ 646 (1151)
T 2eyq_A 608 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 646 (1151)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHH
Confidence 455555555555556655699999999999988764443
No 437
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.51 E-value=0.039 Score=44.26 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~ 56 (365)
.+++.|++|+||||+++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999998864
No 438
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.50 E-value=0.0088 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=22.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
+.|.|++|+||||.++.++..+..
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998754
No 439
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.50 E-value=0.11 Score=49.44 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|+|++|+||||++..++..+.
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998664
No 440
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.50 E-value=0.17 Score=40.50 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~ 56 (365)
.+++.|++|+||||+++.+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 389999999999999999875
No 441
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.48 E-value=0.054 Score=44.97 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 12 i~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998764
No 442
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.48 E-value=0.12 Score=43.99 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=26.9
Q ss_pred CCceEEEEeCCCCCCH----HHHHHHHHHHhhh-cCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLSR----EAQHSLRRTMEKY-SASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~----~~~~~Ll~~le~~-~~~~~~Il~t~~~~ 171 (365)
.+.+++|+||+|.+.. .....+..++... +.+..+++.|....
T Consensus 174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~ 221 (245)
T 3dkp_A 174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFA 221 (245)
T ss_dssp TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCC
T ss_pred ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCC
Confidence 4568999999998754 2344555555443 23556666665554
No 443
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.45 E-value=0.032 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+++.|++|+||||++..++..+.
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88899999999999999998664
No 444
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.45 E-value=0.021 Score=56.25 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
++.....+...+. + +..++.||||||||+++..++..+..
T Consensus 182 n~~Q~~av~~~l~-~--~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ-R--PLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp CHHHHHHHHHHHT-C--SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhc-C--CCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 4555666666553 2 34899999999999998888777654
No 445
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.43 E-value=0.011 Score=50.13 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
.+.|.|++|+||||+++.++..+..
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3899999999999999999998743
No 446
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.41 E-value=0.071 Score=53.28 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCceEEEEeCCCCCC----HHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLS----REAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~----~~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.+.+++|+||+|.+. ....+.++..+.....+.++|+.|....
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~ 183 (702)
T 2p6r_A 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP 183 (702)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT
T ss_pred hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC
Confidence 356899999999864 2334455555554455677888777655
No 447
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.39 E-value=0.012 Score=57.39 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
++|+|++|+||||+++.+++.+.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999874
No 448
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.37 E-value=0.0086 Score=48.30 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
++|.|++|+||||++..+..
T Consensus 19 vli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 449
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.37 E-value=0.11 Score=53.11 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=33.2
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS 171 (365)
Q Consensus 130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~ 171 (365)
+++++|+||+ ..|+......+++.|.+.. ....+|+++++.+
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~ 869 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3589999999 7899999999999888763 3456777777754
No 450
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.37 E-value=0.0044 Score=54.98 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.|+||+|+||||+++.++..+.
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998653
No 451
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.36 E-value=0.022 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (365)
.+.|.|+||+||||+++.+++.+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 39999999999999999999865
No 452
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.34 E-value=0.067 Score=48.76 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~ 56 (365)
.+++.|++|+||||++..+++
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 399999999999999999865
No 453
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.32 E-value=0.0097 Score=47.58 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
+.+.|++|+||||+++.+++
T Consensus 6 v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999976
No 454
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.29 E-value=0.0051 Score=52.48 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+.|.||+|+||||+++.+++.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999999874
No 455
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.28 E-value=0.079 Score=49.82 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+++.|+||+|||+++..++....
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999988654
No 456
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.28 E-value=0.0079 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+.|.|++|+||||.++.++..+.
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999874
No 457
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.25 E-value=0.033 Score=50.74 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844 35 PHLLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
+.+.|+|++|+||||++..++..+..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34999999999999999999987644
No 458
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.25 E-value=0.03 Score=56.17 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=25.4
Q ss_pred CCceEEEEeCCCCCCH----HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLSR----EAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~----~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
.+.+++|+||+|.+.. ...+.++..+. .+.++|+.|....
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---~~~~ii~lSATl~ 180 (720)
T 2zj8_A 137 KDVKILVADEIHLIGSRDRGATLEVILAHML---GKAQIIGLSATIG 180 (720)
T ss_dssp GGEEEEEEETGGGGGCTTTHHHHHHHHHHHB---TTBEEEEEECCCS
T ss_pred hcCCEEEEECCcccCCCcccHHHHHHHHHhh---cCCeEEEEcCCcC
Confidence 4668999999997742 22334444443 2677777776654
No 459
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.25 E-value=0.0087 Score=48.81 Aligned_cols=20 Identities=45% Similarity=0.813 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
+++.|++|+||||+++.+++
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999876
No 460
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.23 E-value=0.066 Score=45.05 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
++|.|.+|+|||+|+..+...
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 899999999999999988763
No 461
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.21 E-value=0.063 Score=44.23 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 28 i~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998864
No 462
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.19 E-value=0.5 Score=41.79 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.+.+.|.||+|||||+..+.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999998763
No 463
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.19 E-value=0.059 Score=44.49 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 32 i~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhhC
Confidence 899999999999999998763
No 464
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.16 E-value=0.019 Score=55.56 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHc-CCCCe-EEEECCCCCcHHHHHHHHHHHhc
Q 017844 19 QDIAQNLKKLVTE-QDCPH-LLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 19 ~~~~~~l~~~l~~-~~~~~-lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+++.+.++..... +..+. ++|+|++|+||||+++.+++.+.
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 4566666666521 22223 89999999999999999998764
No 465
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.15 E-value=0.015 Score=48.76 Aligned_cols=20 Identities=30% Similarity=0.644 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
+++.|++|+||||+++.+..
T Consensus 37 i~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 99999999999999999875
No 466
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.13 E-value=0.01 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
+.|.|+.|+||||+++.++..+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999976
No 467
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.13 E-value=0.018 Score=53.22 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62 (365)
Q Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (365)
..+|+++.||+|+||||+++.++..+....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~ 63 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG 63 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 446799999999999999999988765433
No 468
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.12 E-value=0.012 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
+.|.|++|+||||+++.++..+..
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999997743
No 469
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.10 E-value=0.068 Score=49.34 Aligned_cols=43 Identities=16% Similarity=0.347 Sum_probs=29.4
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
...+++|+||+|.+... ....+...+...+.+..+|+.|..+.
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP 225 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 34679999999976432 23455666666666777888777764
No 470
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.09 E-value=0.046 Score=44.95 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.+++.|++|+||||+++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999988753
No 471
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.08 E-value=0.12 Score=47.77 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=28.6
Q ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844 129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS 171 (365)
Q Consensus 129 ~~~~vliiDE~~~L~~-~~~~~Ll~~le~~~~~~~~Il~t~~~~ 171 (365)
...+++|+||+|.+.. .....+...+...+....+++.|....
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 221 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 221 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCC
Confidence 4568999999986543 334455666665556677777776654
No 472
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.07 E-value=0.0038 Score=51.87 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=20.3
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Q 017844 32 QDCPHLLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 32 ~~~~~lll~Gp~G~GKTtla~~la~ 56 (365)
.+.-.+++.|++|+||||+++.+..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3333489999999999999988865
No 473
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.06 E-value=0.014 Score=46.38 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+.+.
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999874
No 474
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.05 E-value=0.012 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.||+|+||||++..++..+
T Consensus 5 i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHHC
Confidence 7899999999999999999976
No 475
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.04 E-value=0.011 Score=48.06 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
+++.|++|+||||+++.+++
T Consensus 10 i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999976
No 476
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.02 E-value=0.13 Score=48.21 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.+.|.|+||+|||||++.+++.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
No 477
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.01 E-value=0.017 Score=52.36 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~ 61 (365)
.+|+||+|+||||++.+|+-.+..+
T Consensus 26 ~~i~G~NGsGKS~lleAi~~~l~~~ 50 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAILVGLYWP 50 (339)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 7899999999999999997766553
No 478
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.00 E-value=0.048 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=17.1
Q ss_pred eEEEECCCCCcHHHH-HHHHHHHh
Q 017844 36 HLLFYGPPGSGKKTL-IMALLRQV 58 (365)
Q Consensus 36 ~lll~Gp~G~GKTtl-a~~la~~l 58 (365)
++++.||+|+|||+. +..+...+
T Consensus 23 ~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp EEEECCCTTSCTTTTHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 499999999999996 34444433
No 479
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.99 E-value=0.42 Score=36.95 Aligned_cols=71 Identities=13% Similarity=0.065 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCC-CCHHHHHHHHHHHhhhcCceeEEEEecCCC------cccHHHhccce
Q 017844 110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEAIRSRCL 182 (365)
Q Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~-L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~------~l~~~l~sR~~ 182 (365)
..+++... ...++ .+.+++|+|.+++. +..+....|..+++.+++.+.+|++....+ ++..++.....
T Consensus 61 ~~~l~~~~-~s~sl----F~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~ 135 (140)
T 1jql_B 61 WNAIFSLC-QAMSL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSV 135 (140)
T ss_dssp HHHHHHHH-HCCCT----TCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCE
T ss_pred HHHHHHHH-hcCCC----CCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeE
Confidence 34555443 44443 56779999999854 566677889999998888888888875443 24455545444
Q ss_pred eEE
Q 017844 183 NIR 185 (365)
Q Consensus 183 ~i~ 185 (365)
.+.
T Consensus 136 ~v~ 138 (140)
T 1jql_B 136 QVT 138 (140)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 480
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.97 E-value=0.089 Score=49.43 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.5
Q ss_pred eEEEECCCCCcHHHHH-HHHHH
Q 017844 36 HLLFYGPPGSGKKTLI-MALLR 56 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla-~~la~ 56 (365)
++++.||+|+|||..+ ..+..
T Consensus 10 ~vlv~a~TGSGKT~~~l~~~l~ 31 (440)
T 1yks_A 10 TTVLDFHPGAGKTRRFLPQILA 31 (440)
T ss_dssp EEEECCCTTSSTTTTHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4999999999999974 43444
No 481
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.95 E-value=0.015 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
+.|.|++|+||||.++.++..+..
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998743
No 482
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.94 E-value=0.038 Score=55.98 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
++.....+...+. + +..++.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~-~--~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ-R--PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHT-S--SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcc-C--CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4555666666553 2 34899999999999998888877664
No 483
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.93 E-value=0.012 Score=47.41 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
++|.|++|+||||+++.+++.
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999763
No 484
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.91 E-value=0.015 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (365)
+.|.|++|+||||.++.++..+..
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 899999999999999999998743
No 485
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.88 E-value=0.018 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 017844 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (365)
..+++.|++|+||||+++.+.+.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 44999999999999999998753
No 486
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.87 E-value=0.017 Score=45.93 Aligned_cols=21 Identities=19% Similarity=0.596 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998764
No 487
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.84 E-value=0.017 Score=46.33 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998763
No 488
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.83 E-value=0.016 Score=55.69 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~ 61 (365)
++++|.||+||||+++.+++.+...
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhc
Confidence 8999999999999999999987443
No 489
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.82 E-value=0.018 Score=45.87 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+.+.
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999998764
No 490
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.81 E-value=0.0065 Score=52.95 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 017844 37 LLFYGPPGSGKKTLIMALLRQV 58 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (365)
++|.|++|+||||+++.++..+
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999998865
No 491
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.81 E-value=0.021 Score=56.05 Aligned_cols=39 Identities=26% Similarity=0.251 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (365)
Q Consensus 20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (365)
+..+.+...+... ....+++|++|.|||+++-.++..+.
T Consensus 179 dQ~~al~~~~~~~-~~~~vlta~RGRGKSa~lG~~~a~~~ 217 (671)
T 2zpa_A 179 EQQQLLKQLMTMP-PGVAAVTAARGRGKSALAGQLISRIA 217 (671)
T ss_dssp HHHHHHHHHTTCC-SEEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhh-hCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 3344444444322 13489999999999999988888653
No 492
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.79 E-value=0.048 Score=44.95 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=3.8
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||++..+.+.
T Consensus 23 i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 23 VAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEC-----------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999988764
No 493
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.77 E-value=0.018 Score=46.31 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.+++.|++|+||||+++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999998764
No 494
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.71 E-value=0.019 Score=45.42 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999763
No 495
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.71 E-value=0.016 Score=47.20 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
++++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999998753
No 496
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.71 E-value=0.017 Score=45.95 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 899999999999999998763
No 497
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.69 E-value=0.21 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 017844 36 HLLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (365)
.+.|.|++|+||||+++.+++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3889999999999999999864
No 498
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.66 E-value=0.017 Score=45.98 Aligned_cols=20 Identities=25% Similarity=0.732 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLR 56 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (365)
+++.|++|+||||+++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 89999999999999999875
No 499
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.65 E-value=0.021 Score=45.21 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 500
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.63 E-value=0.021 Score=45.33 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 017844 37 LLFYGPPGSGKKTLIMALLRQ 57 (365)
Q Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (365)
+++.|++|+||||+++.+...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998763
Done!