BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017845
(365 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54729|NUB1_MOUSE NEDD8 ultimate buster 1 OS=Mus musculus GN=Nub1 PE=1 SV=2
Length = 614
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 168/368 (45%), Gaps = 51/368 (13%)
Query: 1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
+VWCYF L + L +A +L A++ + +G++ R+ ++ E L LR+ LL+
Sbjct: 286 IVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQ 345
Query: 61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
G+ YHSG ++AR L A+ F +L + + ++ +GF Q+A+ LR C +V
Sbjct: 346 GIQNYHSGNGEEAREYLNKARQLFKELYIDPSKVHNLLQLGFTAQEARLGLRACDGNVDH 405
Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
A + RR+E+ + ++ K+ +E + L +G+ +
Sbjct: 406 AATHI--------------SNRREELAQIRK--EEKEKRRRRLENVNTLRGMGYSTQAAK 449
Query: 181 EAL---RRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAK--IEQLVAMGFE 235
+AL R N +D+ K L L+NP + ++ RQA+ ++ I QLV MGF+
Sbjct: 450 QALHQARGNLDDALKVL--LSNPH----MWWLQDADPENNSRQASPSQESINQLVYMGFD 503
Query: 236 RPRVIEACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVE 295
A R G ++ Q+ Q L G S+P P + E+
Sbjct: 504 TVVAEAALRVFGGNV-QLAAQTLAHHGG--------------SLP----PDLQFSGEDSS 544
Query: 296 GDPDSSFEETSATEDVNGRDVEMEDELANDLTGDVF---ADY-DIEVTKEGEAISEYLSL 351
P +S +++ T + D +ME E N++ D+ DY D + E I+EYLS
Sbjct: 545 PTPSTSPSDSAGTSSAST-DEDMETEAVNEILEDIPEHEEDYLDSTLEDEEVIIAEYLSY 603
Query: 352 LDSVAGIA 359
++S++ A
Sbjct: 604 VESISSAA 611
>sp|Q9Y5A7|NUB1_HUMAN NEDD8 ultimate buster 1 OS=Homo sapiens GN=NUB1 PE=1 SV=2
Length = 615
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 156/360 (43%), Gaps = 45/360 (12%)
Query: 1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
+VWCYF L + L +A +L A++ + +G++ R+ ++ E L LR+ LL+
Sbjct: 287 IVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQ 346
Query: 61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
G+ YHSG +A L A+ F +L + + ++ +GF Q+A+ LR C +V
Sbjct: 347 GIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLGLRACDGNVDH 406
Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
A + RR+E+ + ++ KK +E I+ L +G+
Sbjct: 407 AATHIT--------------NRREELAQIRKEEKE--KKRRRLENIRFLKGMGYSTHAAQ 450
Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAK--IEQLVAMGFERPR 238
+ L + +AL L SN + +S RQ + ++ I++LV MGF+
Sbjct: 451 QVLHAASGNLDEALKILL---SNPQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALV 507
Query: 239 VIEACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVEGDP 298
A R ++ Q+ Q L A+N S +P + E S S P
Sbjct: 508 AEAALRVFRGNV-QLAAQTL----------AHNGGSLPPELPLSPEDSLS---------P 547
Query: 299 DSSFEETSATEDVNGRDVEMEDELANDLTGDVF---ADY-DIEVTKEGEAISEYLSLLDS 354
++ SA D +ME E N++ D+ DY D + E I+EYLS +++
Sbjct: 548 PATSPSDSAGTSSASTDEDMETEAVNEILEDIPEHEEDYLDSTLEDEEIIIAEYLSYVEN 607
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 88 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL-----VEEKAKRVKEREDN 139
Q P+E+++++ SMGF A +ALR + ++ A+D++ EE + V E E+N
Sbjct: 727 QPPEETVAIITSMGFHRNQAIQALRATNSNLERALDWIFSHPEFEEDSDFVIEMENN 783
>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13
PE=1 SV=2
Length = 863
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 88 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL-----VEEKAKRVKEREDN 139
Q P+E ++++ SMGF+ A +ALR + ++ A+D++ EE + V E E+N
Sbjct: 727 QPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENN 783
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
PE=1 SV=2
Length = 1386
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 19/145 (13%)
Query: 101 GFKEQDAKRALRICSQDVGSAIDFLV-----EEKAKRVKERED-NEQRRKEIMEQKR--- 151
GF + + LR+C DVG++++ L+ E +R+K E N+ E MEQ++
Sbjct: 193 GFNTERCQAVLRMCDGDVGASLEHLLTQCFSETFGERMKISEAVNQISLDECMEQRQEEA 252
Query: 152 YGLTPLKKAVDIEKIKELV-SIGFEKELVAEALRRNENDSQKALDDLTNPESNS--AIQL 208
+ L + IE+I+ V +IG E E + R++ K + N + NS +
Sbjct: 253 FALKSICGEKFIERIQNRVWTIGLELEYLTSRFRKS-----KPKESTKNVQENSLEICKF 307
Query: 209 YIESRKR--KRCRQAADAKIEQLVA 231
Y++ + +CR + Q+V
Sbjct: 308 YLKGNCKFGSKCRFKHEVPPNQIVG 332
>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana
GN=DRM1 PE=4 SV=2
Length = 624
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 91 DESLSLVMSMGFKEQDAKRALRICSQDVG--SAIDFLVEEKAKRVKEREDNEQRRKEIM- 147
D L ++ MG+ +DA A+ C +D +DF+ + R + E +KE+M
Sbjct: 192 DRILQALIKMGYLREDAAIAIERCGEDASMEEVVDFICAAQMARQFDEIYAEPDKKELMN 251
Query: 148 ---EQKRYGLTPLKKAVD--IEKIKELVSIG 173
+++ Y TP K D I KE++ G
Sbjct: 252 NNKKRRTYTETPRKPNTDQLISLPKEMIGFG 282
>sp|A2AEY4|MA7D3_MOUSE MAP7 domain-containing protein 3 OS=Mus musculus GN=Map7d3 PE=2
SV=1
Length = 876
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 126 VEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEK 176
+EEK +++KE+++ +QRR+ E+KR K+A D EK K +VS E+
Sbjct: 101 LEEKHRKLKEQKEKDQRRQASAEEKRKQ----KQAEDTEKFKAVVSRTLER 147
>sp|Q8R1K1|UBAC2_MOUSE Ubiquitin-associated domain-containing protein 2 OS=Mus musculus
GN=Ubac2 PE=2 SV=1
Length = 345
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 87 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128
L+V +E ++ +M MGF DA ALR + D+ A +FL++
Sbjct: 304 LEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 345
>sp|Q4R910|UBAC2_MACFA Ubiquitin-associated domain-containing protein 2 OS=Macaca
fascicularis GN=UBAC2 PE=2 SV=1
Length = 345
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 87 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128
L+V +E ++ +M MGF DA ALR + D+ A +FL++
Sbjct: 304 LEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 345
>sp|Q8NBM4|UBAC2_HUMAN Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens
GN=UBAC2 PE=2 SV=1
Length = 344
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 87 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128
L+V +E ++ +M MGF DA ALR + D+ A +FL++
Sbjct: 303 LEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 344
>sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana
GN=DRM2 PE=1 SV=1
Length = 626
Score = 31.6 bits (70), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 164 EKIKELVSIGFEKELVAEALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAAD 223
E L +GF E+++ A++ T P +++ + S+ C +A
Sbjct: 63 EVFATLFDMGFPVEMISRAIKE------------TGPNVETSVIIDTISKYSSDC-EAGS 109
Query: 224 AK---IEQLVAMGFERPRVIEACRAGG-DDIHQIMLQLLGEPGSNPTAAA 269
+K I+ +AMGF+ +V++A + G D++ I LL P + AA
Sbjct: 110 SKSKAIDHFLAMGFDEEKVVKAIQEHGEDNMEAIANALLSCPEAKKLPAA 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,493,174
Number of Sequences: 539616
Number of extensions: 5466124
Number of successful extensions: 29889
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 294
Number of HSP's that attempted gapping in prelim test: 28867
Number of HSP's gapped (non-prelim): 1133
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)