Query 017845
Match_columns 365
No_of_seqs 257 out of 675
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lbc_A Ubiquitin carboxyl-term 99.9 6.1E-22 2.1E-26 169.1 9.1 104 88-200 1-117 (126)
2 4ae4_A Ubiquitin-associated pr 99.9 1.3E-21 4.4E-26 165.8 9.4 101 91-197 9-111 (118)
3 1oqy_A HHR23A, UV excision rep 99.8 6.9E-22 2.4E-26 196.4 1.5 162 89-263 167-366 (368)
4 2lbc_A Ubiquitin carboxyl-term 99.8 2.9E-20 1E-24 158.7 7.3 102 161-262 2-118 (126)
5 4ae4_A Ubiquitin-associated pr 99.7 4E-18 1.4E-22 144.4 10.0 99 163-261 9-115 (118)
6 3ihp_A Ubiquitin carboxyl-term 99.5 5.8E-14 2E-18 152.7 7.8 108 86-201 648-760 (854)
7 2crn_A Ubash3A protein; compac 99.4 1.8E-13 6.2E-18 103.9 4.0 50 86-135 5-55 (64)
8 2cpw_A CBL-interacting protein 99.4 1.4E-13 4.7E-18 104.6 3.1 49 84-133 14-63 (64)
9 1whc_A RSGI RUH-027, UBA/UBX 3 99.4 2.8E-13 9.6E-18 102.8 4.2 49 87-135 6-55 (64)
10 2dag_A Ubiquitin carboxyl-term 99.4 4.6E-13 1.6E-17 104.5 5.4 50 86-135 5-55 (74)
11 1wgn_A UBAP1, ubiquitin associ 99.4 3E-13 1E-17 100.9 3.7 42 222-263 19-60 (63)
12 2g3q_A Protein YBL047C; endocy 99.3 6.2E-13 2.1E-17 92.9 4.3 41 89-129 3-43 (43)
13 2dak_A Ubiquitin carboxyl-term 99.3 6.2E-13 2.1E-17 100.5 4.4 48 88-135 7-54 (63)
14 2dai_A Ubadc1, ubiquitin assoc 99.3 9.5E-13 3.3E-17 104.8 5.5 49 87-135 26-74 (83)
15 1wiv_A UBP14, ubiquitin-specif 99.3 4.5E-13 1.5E-17 104.2 1.9 64 192-263 3-70 (73)
16 1wgn_A UBAP1, ubiquitin associ 99.3 2.3E-12 7.8E-17 96.1 4.4 40 91-130 20-59 (63)
17 1ify_A HHR23A, UV excision rep 99.3 1.8E-12 6.2E-17 93.3 3.4 41 90-130 8-48 (49)
18 1wiv_A UBP14, ubiquitin-specif 99.3 3.4E-12 1.2E-16 99.3 5.0 45 88-132 27-71 (73)
19 1vek_A UBP14, ubiquitin-specif 99.3 4.3E-12 1.5E-16 101.2 5.4 50 86-135 25-75 (84)
20 2ekk_A UBA domain from E3 ubiq 99.3 3.9E-12 1.3E-16 90.6 4.6 42 87-129 6-47 (47)
21 1wji_A Tudor domain containing 99.3 5.6E-12 1.9E-16 95.4 5.6 45 88-132 7-51 (63)
22 1wji_A Tudor domain containing 99.3 8E-12 2.7E-16 94.5 6.5 45 221-265 8-52 (63)
23 2dag_A Ubiquitin carboxyl-term 99.3 9.4E-12 3.2E-16 97.0 6.9 44 220-263 7-51 (74)
24 3ihp_A Ubiquitin carboxyl-term 99.2 6.2E-12 2.1E-16 136.7 5.9 104 161-264 651-762 (854)
25 2g3q_A Protein YBL047C; endocy 99.2 1.2E-11 4E-16 86.4 5.2 40 221-260 3-42 (43)
26 1veg_A NEDD8 ultimate buster-1 99.2 2.3E-11 7.8E-16 96.7 6.2 48 218-265 25-72 (83)
27 1dv0_A DNA repair protein HHR2 99.2 1.4E-11 4.7E-16 88.0 3.3 43 221-263 3-45 (47)
28 1veg_A NEDD8 ultimate buster-1 99.2 3.3E-11 1.1E-15 95.8 5.7 46 86-131 25-70 (83)
29 1dv0_A DNA repair protein HHR2 99.1 6.9E-12 2.4E-16 89.6 0.4 43 90-132 4-46 (47)
30 2cpw_A CBL-interacting protein 99.1 4.4E-11 1.5E-15 90.7 4.8 43 221-263 18-61 (64)
31 2dkl_A Trinucleotide repeat co 99.1 2.3E-11 7.7E-16 97.3 3.2 45 89-133 20-64 (85)
32 1vg5_A RSGI RUH-014, rhomboid 99.1 8.8E-11 3E-15 91.3 5.6 43 88-130 27-69 (73)
33 2ekk_A UBA domain from E3 ubiq 99.1 7E-11 2.4E-15 84.0 4.5 41 220-261 7-47 (47)
34 1ify_A HHR23A, UV excision rep 99.1 6.2E-11 2.1E-15 85.2 4.1 40 221-260 7-46 (49)
35 2crn_A Ubash3A protein; compac 99.1 6.3E-11 2.1E-15 89.9 4.2 44 220-263 7-51 (64)
36 2dak_A Ubiquitin carboxyl-term 99.1 6.1E-11 2.1E-15 89.5 4.0 44 220-263 7-50 (63)
37 1z96_A DNA-damage, UBA-domain 99.1 1.1E-10 3.6E-15 79.8 4.8 36 91-126 5-40 (40)
38 2knz_A Ubiquilin-4; cytoplasm, 99.1 1.3E-10 4.5E-15 84.8 5.6 39 91-129 12-51 (53)
39 1vg5_A RSGI RUH-014, rhomboid 99.1 1.5E-10 5.3E-15 89.9 6.1 44 220-263 27-70 (73)
40 1whc_A RSGI RUH-027, UBA/UBX 3 99.1 1.1E-10 3.8E-15 88.4 5.0 44 220-263 7-51 (64)
41 2jy5_A Ubiquilin-1; UBA, alter 99.0 1.7E-10 5.7E-15 84.0 4.8 38 91-128 13-51 (52)
42 2jy5_A Ubiquilin-1; UBA, alter 99.0 2.4E-10 8.4E-15 83.1 5.7 40 222-261 12-52 (52)
43 2dai_A Ubadc1, ubiquitin assoc 99.0 2E-10 6.9E-15 91.4 5.7 44 220-263 27-70 (83)
44 2knz_A Ubiquilin-4; cytoplasm, 99.0 3.1E-10 1.1E-14 82.8 5.6 39 223-261 12-51 (53)
45 2bwb_A Ubiquitin-like protein 99.0 6E-10 2E-14 79.1 5.2 38 91-128 8-46 (46)
46 1z96_A DNA-damage, UBA-domain 99.0 7.7E-10 2.6E-14 75.5 5.3 37 222-258 4-40 (40)
47 1vek_A UBP14, ubiquitin-specif 98.9 9.4E-10 3.2E-14 87.7 6.3 45 219-263 26-71 (84)
48 2dkl_A Trinucleotide repeat co 98.9 1E-09 3.5E-14 87.7 5.3 44 220-263 19-62 (85)
49 2bwb_A Ubiquitin-like protein 98.9 1.5E-09 5.2E-14 77.0 5.6 38 223-260 8-46 (46)
50 2dah_A Ubiquilin-3; UBA domain 98.9 1.2E-09 4E-14 80.2 4.7 41 91-131 10-51 (54)
51 1wr1_B Ubiquitin-like protein 98.9 1.9E-09 6.6E-14 80.2 5.2 39 91-129 18-57 (58)
52 1vej_A Riken cDNA 4931431F19; 98.9 1.5E-09 5E-14 84.6 4.7 41 91-131 30-71 (74)
53 2dah_A Ubiquilin-3; UBA domain 98.9 1.7E-09 5.9E-14 79.3 4.5 41 223-263 10-51 (54)
54 2dna_A Unnamed protein product 98.9 1.6E-09 5.5E-14 82.7 4.4 41 91-131 20-61 (67)
55 1vej_A Riken cDNA 4931431F19; 98.9 3.1E-09 1.1E-13 82.7 5.9 42 222-263 29-71 (74)
56 1wr1_B Ubiquitin-like protein 98.8 2.6E-09 8.8E-14 79.5 4.9 39 223-261 18-57 (58)
57 2dna_A Unnamed protein product 98.8 3.4E-09 1.2E-13 80.9 5.4 43 223-265 20-63 (67)
58 2ooa_A E3 ubiquitin-protein li 98.7 1.1E-08 3.8E-13 73.8 5.4 38 222-259 11-48 (52)
59 2qsf_X RAD23, UV excision repa 98.7 2.4E-08 8.1E-13 89.3 8.7 86 177-262 36-170 (171)
60 2ooa_A E3 ubiquitin-protein li 98.7 2.4E-08 8.1E-13 72.1 5.7 37 91-127 12-48 (52)
61 2d9s_A CBL E3 ubiquitin protei 98.7 2.6E-08 8.8E-13 72.2 5.0 40 221-260 8-47 (53)
62 2juj_A E3 ubiquitin-protein li 98.6 4.1E-08 1.4E-12 71.4 4.2 40 221-260 6-45 (56)
63 2d9s_A CBL E3 ubiquitin protei 98.5 1.1E-07 3.9E-12 68.8 5.7 40 89-128 8-47 (53)
64 2juj_A E3 ubiquitin-protein li 98.5 9.3E-08 3.2E-12 69.5 4.9 39 90-128 7-45 (56)
65 2cos_A Serine/threonine protei 98.5 9.7E-08 3.3E-12 69.3 4.7 39 88-126 7-46 (54)
66 2cwb_A Chimera of immunoglobul 98.5 1.5E-07 5.3E-12 78.1 5.5 41 222-262 66-107 (108)
67 2cwb_A Chimera of immunoglobul 98.5 1.7E-07 5.8E-12 77.9 5.7 39 91-129 67-106 (108)
68 2oo9_A E3 ubiquitin-protein li 98.4 3.1E-07 1.1E-11 64.4 5.1 38 223-260 5-42 (46)
69 2cos_A Serine/threonine protei 98.3 3.9E-07 1.3E-11 66.2 4.5 38 160-197 7-45 (54)
70 2oo9_A E3 ubiquitin-protein li 98.3 1.3E-06 4.6E-11 61.2 5.5 38 91-128 5-42 (46)
71 1oqy_A HHR23A, UV excision rep 98.2 1.1E-06 3.7E-11 87.3 5.9 44 221-264 167-210 (368)
72 1wj7_A Hypothetical protein (R 98.1 2.3E-06 7.9E-11 70.4 4.7 41 91-131 40-81 (104)
73 3k9o_A Ubiquitin-conjugating e 98.1 5.3E-06 1.8E-10 75.5 7.2 39 222-260 163-201 (201)
74 3k9o_A Ubiquitin-conjugating e 97.9 8.1E-06 2.8E-10 74.3 5.6 38 91-128 164-201 (201)
75 2cp8_A NEXT to BRCA1 gene 1 pr 97.9 6.7E-06 2.3E-10 60.1 3.9 40 90-129 9-49 (54)
76 2cp8_A NEXT to BRCA1 gene 1 pr 97.9 8.5E-06 2.9E-10 59.5 4.1 42 222-263 9-51 (54)
77 2qsf_X RAD23, UV excision repa 97.9 9.1E-06 3.1E-10 72.6 4.3 40 91-130 131-170 (171)
78 1wj7_A Hypothetical protein (R 97.8 2.1E-05 7.1E-10 64.8 5.4 45 223-268 40-85 (104)
79 4dbg_B Ring finger protein 31; 97.5 0.00052 1.8E-08 60.3 10.4 109 101-258 28-139 (162)
80 4dbg_B Ring finger protein 31; 97.5 0.00026 8.9E-09 62.2 7.7 68 101-201 74-142 (162)
81 3e46_A Ubiquitin-conjugating e 97.4 0.00027 9.2E-09 66.7 7.3 38 223-260 216-253 (253)
82 2cp9_A EF-TS, EF-TSMT, elongat 97.0 0.00084 2.9E-08 50.6 5.2 41 88-128 7-48 (64)
83 3e46_A Ubiquitin-conjugating e 96.9 0.00083 2.9E-08 63.3 5.6 37 91-127 216-252 (253)
84 1wgl_A TOLL-interacting protei 96.4 0.0042 1.4E-07 46.0 4.8 44 220-263 7-52 (59)
85 2cp9_A EF-TS, EF-TSMT, elongat 96.3 0.0039 1.3E-07 47.0 4.4 38 160-197 7-45 (64)
86 1wgl_A TOLL-interacting protei 96.0 0.0079 2.7E-07 44.5 4.6 45 87-131 6-52 (59)
87 1otr_A Protein CUE2; protein-p 95.7 0.012 4E-07 42.0 4.4 40 91-130 5-46 (49)
88 1q02_A Sequestosome 1; helical 95.6 0.0072 2.5E-07 43.5 2.9 37 91-127 11-49 (52)
89 1otr_A Protein CUE2; protein-p 94.9 0.027 9.3E-07 40.1 4.1 38 223-260 5-44 (49)
90 1q02_A Sequestosome 1; helical 93.9 0.04 1.4E-06 39.6 3.1 36 223-258 11-48 (52)
91 2dhy_A CUE domain-containing p 93.8 0.073 2.5E-06 40.3 4.6 42 221-262 17-60 (67)
92 1aip_C EF-TS, elongation facto 93.8 0.067 2.3E-06 48.5 5.2 38 92-129 5-43 (196)
93 4fp9_B Mterf domain-containing 93.8 0.66 2.3E-05 45.1 12.7 131 91-263 47-197 (335)
94 1xb2_B EF-TS, elongation facto 93.5 0.055 1.9E-06 51.9 4.2 41 91-131 5-46 (291)
95 2pwq_A Ubiquitin conjugating e 93.1 0.017 5.8E-07 53.1 0.0 38 223-260 178-215 (216)
96 2pwq_A Ubiquitin conjugating e 92.7 0.02 7E-07 52.6 0.0 38 91-128 178-215 (216)
97 2dhy_A CUE domain-containing p 91.9 0.25 8.7E-06 37.3 5.1 39 91-130 19-60 (67)
98 1v92_A NSFL1 cofactor P47; 3-h 91.4 0.28 9.7E-06 33.5 4.6 39 224-262 7-46 (46)
99 1xb2_B EF-TS, elongation facto 91.2 0.12 4.1E-06 49.6 3.4 35 163-197 5-40 (291)
100 1aip_C EF-TS, elongation facto 90.8 0.22 7.4E-06 45.2 4.5 34 164-197 5-39 (196)
101 1tr8_A Conserved protein (MTH1 90.4 0.28 9.7E-06 40.0 4.5 39 87-125 62-101 (102)
102 1tte_A Ubiquitin-conjugating e 88.7 0.29 9.9E-06 44.8 3.7 29 89-117 168-196 (215)
103 1tr8_A Conserved protein (MTH1 88.5 0.55 1.9E-05 38.2 4.8 38 160-197 63-101 (102)
104 1tte_A Ubiquitin-conjugating e 88.3 0.33 1.1E-05 44.5 3.7 29 221-249 168-196 (215)
105 2dal_A Protein KIAA0794; FAS a 87.3 0.97 3.3E-05 33.2 5.1 40 223-262 16-56 (62)
106 3edt_B KLC 2, kinesin light ch 86.9 3.5 0.00012 35.2 9.4 104 2-130 50-155 (283)
107 1ixs_A Holliday junction DNA h 85.7 1.2 4.1E-05 32.8 4.9 24 91-114 18-41 (62)
108 2dzl_A Protein FAM100B; UBA-li 85.0 1.9 6.4E-05 32.2 5.7 40 224-263 19-59 (66)
109 3ro3_A PINS homolog, G-protein 84.4 5.4 0.00018 30.6 8.6 99 3-129 17-116 (164)
110 2dam_A ETEA protein; KIAA0887, 84.2 1.9 6.4E-05 32.3 5.4 40 223-262 19-60 (67)
111 3nf1_A KLC 1, kinesin light ch 84.0 5.8 0.0002 34.5 9.6 103 3-130 119-223 (311)
112 3m66_A Mterf3, mterf domain-co 82.8 7.4 0.00025 35.7 10.2 162 91-263 6-196 (270)
113 1vdl_A Ubiquitin carboxyl-term 82.5 4.6 0.00016 31.1 7.0 45 222-266 24-70 (80)
114 2di0_A Activating signal coint 82.2 2.1 7.3E-05 32.6 5.0 38 92-129 15-54 (71)
115 2di0_A Activating signal coint 81.6 2.5 8.5E-05 32.2 5.2 39 223-261 14-54 (71)
116 3nf1_A KLC 1, kinesin light ch 81.3 6 0.0002 34.4 8.6 103 3-130 77-181 (311)
117 1p3q_Q VPS9P, vacuolar protein 80.3 0.68 2.3E-05 33.5 1.6 38 222-259 12-51 (54)
118 1v92_A NSFL1 cofactor P47; 3-h 79.8 2.8 9.5E-05 28.3 4.6 38 91-128 6-44 (46)
119 4fp9_B Mterf domain-containing 78.9 5.3 0.00018 38.7 7.9 95 164-260 48-158 (335)
120 3edt_B KLC 2, kinesin light ch 78.8 7.2 0.00025 33.1 8.1 103 3-130 93-197 (283)
121 3gw4_A Uncharacterized protein 77.3 13 0.00043 30.3 8.9 101 3-131 74-176 (203)
122 2dzl_A Protein FAM100B; UBA-li 77.2 3.7 0.00013 30.6 4.9 38 164-201 19-58 (66)
123 2dal_A Protein KIAA0794; FAS a 77.2 3.5 0.00012 30.2 4.7 39 91-129 16-55 (62)
124 2lva_A Ubiquitin carboxyl-term 78.3 0.52 1.8E-05 39.7 0.0 45 222-266 18-64 (129)
125 3gw4_A Uncharacterized protein 74.8 22 0.00075 28.8 9.8 101 3-130 34-135 (203)
126 3ro3_A PINS homolog, G-protein 74.2 13 0.00045 28.2 7.8 99 3-129 57-156 (164)
127 1zza_A Stannin, AG8_1; helix, 74.0 0.59 2E-05 36.0 -0.3 17 2-18 34-50 (90)
128 1ixs_A Holliday junction DNA h 73.7 3.1 0.00011 30.6 3.7 23 163-185 18-40 (62)
129 3sf4_A G-protein-signaling mod 73.0 12 0.00042 33.8 8.4 99 14-129 156-254 (406)
130 2dam_A ETEA protein; KIAA0887, 72.5 5.5 0.00019 29.7 4.8 40 91-130 19-60 (67)
131 3avx_A Elongation factor TS, e 70.7 0.67 2.3E-05 52.4 -0.9 41 89-129 4-45 (1289)
132 3mva_O Transcription terminati 70.4 74 0.0025 30.1 17.4 145 27-185 56-223 (343)
133 3e21_A HFAF1, FAS-associated f 69.9 4.9 0.00017 27.8 3.7 33 91-123 6-40 (45)
134 4a1s_A PINS, partner of inscut 69.5 6.2 0.00021 36.3 5.6 100 12-129 190-290 (411)
135 3mva_O Transcription terminati 69.4 8.1 0.00028 36.9 6.6 90 90-188 19-112 (343)
136 3ro2_A PINS homolog, G-protein 67.6 18 0.0006 31.3 7.9 71 52-130 221-291 (338)
137 3ro2_A PINS homolog, G-protein 65.7 15 0.00052 31.7 7.1 69 53-129 262-330 (338)
138 3e21_A HFAF1, FAS-associated f 65.7 7.8 0.00027 26.8 4.1 35 222-256 5-41 (45)
139 3sf4_A G-protein-signaling mod 65.3 25 0.00085 31.7 8.7 71 52-130 225-295 (406)
140 4a1s_A PINS, partner of inscut 64.7 22 0.00077 32.5 8.4 70 53-130 262-331 (411)
141 2qho_B E3 ubiquitin-protein li 63.1 16 0.00056 25.8 5.3 41 222-262 9-51 (53)
142 3ulq_A Response regulator aspa 62.0 25 0.00086 32.3 8.3 102 3-130 151-252 (383)
143 3q15_A PSP28, response regulat 62.0 24 0.00082 32.6 8.1 102 3-130 149-250 (378)
144 3uq3_A Heat shock protein STI1 58.4 41 0.0014 27.9 8.4 37 48-84 73-109 (258)
145 3ulq_A Response regulator aspa 58.4 35 0.0012 31.3 8.6 66 56-129 105-170 (383)
146 3rjv_A Putative SEL1 repeat pr 55.3 49 0.0017 28.1 8.4 52 60-128 24-79 (212)
147 1cuk_A RUVA protein; DNA repai 53.1 13 0.00044 33.4 4.4 24 91-114 161-184 (203)
148 3avx_A Elongation factor TS, e 52.6 1.7 5.7E-05 49.2 -1.9 36 163-198 6-42 (1289)
149 4g1t_A Interferon-induced prot 51.8 8.6 0.00029 36.2 3.2 34 54-87 51-84 (472)
150 2xev_A YBGF; tetratricopeptide 51.4 13 0.00044 27.9 3.6 57 55-112 40-100 (129)
151 1hz4_A MALT regulatory protein 51.4 62 0.0021 29.3 8.9 67 53-128 134-200 (373)
152 2w84_A Peroxisomal membrane pr 51.3 33 0.0011 25.9 5.6 44 190-248 18-61 (70)
153 1p3q_Q VPS9P, vacuolar protein 50.6 6.4 0.00022 28.4 1.5 34 163-196 13-48 (54)
154 3dfg_A Xcrecx, regulatory prot 49.6 1.2E+02 0.0041 25.7 13.3 72 164-245 86-158 (162)
155 3e7l_A Transcriptional regulat 49.5 9.3 0.00032 27.4 2.3 24 234-257 19-42 (63)
156 3m66_A Mterf3, mterf domain-co 49.4 14 0.00046 33.9 4.0 23 165-187 44-66 (270)
157 3ff5_A PEX14P, peroxisomal bio 49.1 32 0.0011 24.7 5.0 42 190-246 13-54 (54)
158 2ztd_A Holliday junction ATP-d 48.8 20 0.00068 32.5 4.9 68 34-114 120-188 (212)
159 2lva_A Ubiquitin carboxyl-term 54.2 3.7 0.00013 34.5 0.0 35 165-199 21-57 (129)
160 4i17_A Hypothetical protein; T 48.5 1.2E+02 0.0039 25.2 9.8 32 54-85 76-107 (228)
161 3q15_A PSP28, response regulat 48.4 28 0.00094 32.1 6.1 69 53-129 100-168 (378)
162 1hh8_A P67PHOX, NCF-2, neutrop 47.2 27 0.00092 28.7 5.3 30 56-85 73-102 (213)
163 2qho_B E3 ubiquitin-protein li 46.3 48 0.0016 23.4 5.4 45 86-130 5-51 (53)
164 2km4_A Regulator of TY1 transp 45.4 20 0.0007 30.0 4.2 35 100-134 1-38 (142)
165 1umq_A Photosynthetic apparatu 44.5 12 0.0004 28.9 2.3 24 234-257 41-64 (81)
166 3u3w_A Transcriptional activat 44.0 93 0.0032 27.4 8.7 73 50-129 192-264 (293)
167 3bee_A Putative YFRE protein; 43.2 39 0.0013 25.6 5.2 42 54-96 43-84 (93)
168 1hz4_A MALT regulatory protein 41.2 1.7E+02 0.0058 26.2 10.2 34 54-87 93-126 (373)
169 4g1t_A Interferon-induced prot 40.6 21 0.00073 33.5 4.0 61 13-86 66-126 (472)
170 1cuk_A RUVA protein; DNA repai 40.3 29 0.00098 31.1 4.6 24 223-246 161-184 (203)
171 3n71_A Histone lysine methyltr 37.3 53 0.0018 32.9 6.5 87 10-113 363-450 (490)
172 4f3v_A ESX-1 secretion system 37.0 65 0.0022 30.1 6.7 47 53-103 207-253 (282)
173 2ztd_A Holliday junction ATP-d 37.0 45 0.0016 30.1 5.4 24 223-246 165-188 (212)
174 1p5q_A FKBP52, FK506-binding p 36.9 2.1E+02 0.0071 26.1 10.2 63 51-128 193-256 (336)
175 3urz_A Uncharacterized protein 36.6 85 0.0029 26.3 6.9 65 20-85 19-85 (208)
176 2v5f_A Prolyl 4-hydroxylase su 36.2 1.1E+02 0.0039 22.8 7.0 59 60-128 11-72 (104)
177 1vdl_A Ubiquitin carboxyl-term 33.5 26 0.00088 26.9 2.6 39 93-131 27-67 (80)
178 1ufz_A Hypothetical protein BA 33.1 72 0.0025 24.8 5.1 33 96-128 43-75 (83)
179 3k6g_A Telomeric repeat-bindin 33.1 98 0.0033 25.1 6.1 32 230-261 22-53 (111)
180 4gco_A Protein STI-1; structur 33.0 26 0.00089 27.4 2.8 57 57-128 16-73 (126)
181 2ho1_A Type 4 fimbrial biogene 31.5 1.9E+02 0.0064 23.9 8.3 25 58-82 109-133 (252)
182 3sz7_A HSC70 cochaperone (SGT) 31.1 1.5E+02 0.005 23.3 7.2 61 53-128 10-71 (164)
183 2ifu_A Gamma-SNAP; membrane fu 30.7 1.6E+02 0.0055 26.2 8.1 63 58-129 159-222 (307)
184 3hym_B Cell division cycle pro 30.4 2.1E+02 0.0073 24.4 8.6 28 57-84 196-223 (330)
185 3vtx_A MAMA; tetratricopeptide 30.3 28 0.00097 28.0 2.6 29 56-84 7-35 (184)
186 3qwp_A SET and MYND domain-con 30.2 1.7E+02 0.0057 28.5 8.7 84 12-112 343-427 (429)
187 1ntc_A Protein (nitrogen regul 29.6 17 0.00059 27.9 1.1 24 234-257 51-74 (91)
188 1eto_A FIS, factor for inversi 29.4 28 0.00096 27.5 2.3 24 234-257 58-81 (98)
189 2xev_A YBGF; tetratricopeptide 29.1 1.7E+02 0.0057 21.4 7.4 30 58-87 6-35 (129)
190 3qww_A SET and MYND domain-con 28.4 2.6E+02 0.009 27.3 9.8 83 37-127 322-407 (433)
191 3n71_A Histone lysine methyltr 28.1 2.3E+02 0.0077 28.3 9.4 84 37-128 333-419 (490)
192 3sz7_A HSC70 cochaperone (SGT) 28.1 1.4E+02 0.0046 23.5 6.5 32 54-85 45-76 (164)
193 3k9i_A BH0479 protein; putativ 28.0 1.5E+02 0.0053 21.9 6.5 63 52-129 25-88 (117)
194 3u4t_A TPR repeat-containing p 28.0 1.2E+02 0.0042 25.4 6.5 47 51-100 218-264 (272)
195 1kt0_A FKBP51, 51 kDa FK506-bi 27.7 4E+02 0.014 25.4 10.9 63 51-128 314-377 (457)
196 1g2h_A Transcriptional regulat 27.6 29 0.001 24.6 2.0 23 234-257 21-43 (61)
197 1na3_A Designed protein CTPR2; 27.4 1E+02 0.0034 21.0 4.9 60 55-129 10-70 (91)
198 1ihg_A Cyclophilin 40; ppiase 26.9 1.1E+02 0.0038 28.8 6.6 29 54-82 273-301 (370)
199 2y4t_A DNAJ homolog subfamily 26.6 92 0.0031 28.6 5.8 27 56-82 96-122 (450)
200 3ieg_A DNAJ homolog subfamily 26.5 1.4E+02 0.0049 25.8 6.8 99 1-127 160-259 (359)
201 1ufz_A Hypothetical protein BA 26.5 85 0.0029 24.4 4.5 28 233-260 48-75 (83)
202 3qww_A SET and MYND domain-con 26.4 1.1E+02 0.0036 30.1 6.5 74 10-97 352-426 (433)
203 3rkv_A Putative peptidylprolyl 26.3 56 0.0019 25.9 3.7 33 53-85 10-42 (162)
204 3dfg_A Xcrecx, regulatory prot 25.8 2E+02 0.0067 24.3 7.3 96 8-113 58-158 (162)
205 1qqe_A Vesicular transport pro 25.6 1.6E+02 0.0055 26.0 7.1 100 15-128 2-103 (292)
206 4gcn_A Protein STI-1; structur 24.8 1.6E+02 0.0055 22.5 6.2 44 52-99 81-124 (127)
207 3qky_A Outer membrane assembly 24.7 1.6E+02 0.0056 24.9 6.8 103 3-127 60-173 (261)
208 1klx_A Cysteine rich protein B 24.4 1.1E+02 0.0039 24.1 5.3 29 99-127 89-122 (138)
209 4g3o_A E3 ubiquitin-protein li 23.7 1.4E+02 0.0047 21.7 4.9 38 91-129 18-57 (58)
210 4abn_A Tetratricopeptide repea 23.1 1.7E+02 0.0058 28.2 7.2 33 53-85 101-134 (474)
211 3e7l_A Transcriptional regulat 23.1 39 0.0014 23.9 2.0 24 174-197 19-42 (63)
212 1ixr_A Holliday junction DNA h 23.0 18 0.0006 32.2 0.0 24 91-114 147-170 (191)
213 2vyi_A SGTA protein; chaperone 22.7 2.1E+02 0.0072 20.3 6.9 63 51-128 9-72 (131)
214 4g3o_A E3 ubiquitin-protein li 22.4 1.6E+02 0.0056 21.3 5.1 36 224-260 19-56 (58)
215 1elw_A TPR1-domain of HOP; HOP 22.2 2E+02 0.007 20.0 6.3 60 55-128 5-64 (118)
216 2kck_A TPR repeat; tetratricop 22.2 2E+02 0.0068 19.9 6.6 61 56-129 42-104 (112)
217 3ma5_A Tetratricopeptide repea 21.9 2.3E+02 0.0078 20.4 7.5 61 55-130 8-69 (100)
218 4b4t_Q 26S proteasome regulato 21.8 1.5E+02 0.0053 27.0 6.3 74 50-130 171-244 (434)
219 2ejs_A Autocrine motility fact 21.2 1.7E+02 0.0058 21.1 5.0 37 92-129 15-53 (58)
220 3bq3_A Defective in cullin ned 21.1 67 0.0023 30.1 3.6 39 223-261 16-55 (270)
221 2ifu_A Gamma-SNAP; membrane fu 20.9 3.5E+02 0.012 23.8 8.5 65 56-129 78-142 (307)
222 3d5l_A Regulatory protein RECX 20.7 4.4E+02 0.015 23.2 12.9 132 93-245 67-205 (221)
223 2kna_A Baculoviral IAP repeat- 20.7 69 0.0024 25.6 3.1 37 92-128 29-72 (104)
224 3uq3_A Heat shock protein STI1 20.4 3.5E+02 0.012 22.0 8.9 61 53-128 138-199 (258)
225 2kat_A Uncharacterized protein 20.1 2.5E+02 0.0087 20.3 6.4 60 55-129 20-80 (115)
No 1
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.86 E-value=6.1e-22 Score=169.14 Aligned_cols=104 Identities=19% Similarity=0.327 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCC--CC------
Q 017845 88 QVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTP--LK------ 158 (365)
Q Consensus 88 ~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~--~~------ 158 (365)
.||++.|.+|++|||++.+|++||++|+| |++.|++||++|+++++...+ . ....+.... ..
T Consensus 1 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~ep------l---~~~~~~s~~~~~~~~l~~~ 71 (126)
T 2lbc_A 1 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEP------L---TMPGYGGAASAGASVFGAS 71 (126)
T ss_dssp CCCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCT------T---CCSSCCSSSSSCCCCSTTS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccccc------c---cccccccccccchhhhccc
Confidence 37899999999999999999999999976 899999999999998754211 0 000111110 00
Q ss_pred --Cc-CCHHHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHhhc-CCC
Q 017845 159 --KA-VDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNP 200 (365)
Q Consensus 159 --~~-vd~~~l~~L~~MGF~~~~Ar~ALr~t~ndve~Al~~L-~~p 200 (365)
.+ ++++.|++|++|||++..|++||+.|+||+++|++|| +++
T Consensus 72 ~~~~~~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~ 117 (126)
T 2lbc_A 72 GLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHP 117 (126)
T ss_dssp SCCCCCCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred ccccCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 22 7899999999999999999999999999999999998 444
No 2
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.85 E-value=1.3e-21 Score=165.77 Aligned_cols=101 Identities=20% Similarity=0.295 Sum_probs=78.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh--hHHHhhhhHHHHHHHHHHHhhcCCCCCCCcCCHHHHHH
Q 017845 91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA--KRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKE 168 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~--d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vd~~~l~~ 168 (365)
.+.|.+|++||||+.+|++||++|+||++.||+||++|+. ++....+ ..+...+ .++.+..+.+++++.|++
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h~~L~d~~~d~~-~~e~~l~-----~~~~~~~~~~~~~~~v~~ 82 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHGQLCEKGFDPL-LVEEALE-----MHQCSEEKMMEFLQLMSK 82 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHTTCCHH-HHHHHHH-----HCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHhchhcccCCChh-hhHHHHH-----hccCCccccccCHHHHHH
Confidence 5779999999999999999999999999999999999973 2111100 0111121 112222223567889999
Q ss_pred HHhCCCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845 169 LVSIGFEKELVAEALRRNENDSQKALDDL 197 (365)
Q Consensus 169 L~~MGF~~~~Ar~ALr~t~ndve~Al~~L 197 (365)
|++|||+..+|++||+.|+||+++|++||
T Consensus 83 L~eMGF~~~~a~~AL~~~~nd~erAlewL 111 (118)
T 4ae4_A 83 FKEMGFELKDIKEVLLLHNNDQDNALEDL 111 (118)
T ss_dssp HHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999997
No 3
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.82 E-value=6.9e-22 Score=196.35 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=122.9
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhh--cCCC--CCCCcCCHH
Q 017845 89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKR--YGLT--PLKKAVDIE 164 (365)
Q Consensus 89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~--~g~~--~~~~~vd~~ 164 (365)
.+++.|.+||+|||++.+|++|||+++||+++||+||++|+++...... ..+.. .... +.+. ...
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~ 235 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEH---------GSVQESQVSEQPATEAA--GEN 235 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCC---------CCCCCCCSSCCCCSSCC--SCC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCccccccc---------CCccccccccccCcccc--ccc
Confidence 4788999999999999999999999999999999999999987422100 00000 0000 0000 112
Q ss_pred HHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc--CCCcchHHHHHhHHHHhhhh------------------------
Q 017845 165 KIKELVSI-GFEKELVAEALRRNENDSQKALDDL--TNPESNSAIQLYIESRKRKR------------------------ 217 (365)
Q Consensus 165 ~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L--~~p~~~~~L~~~~~~~~~~~------------------------ 217 (365)
.+..|... -| .+.|..+++++.-++.-+++| +||++.+.|+.+++.+.+-.
T Consensus 236 ~l~~Lr~~pqf--~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
T 1oqy_A 236 PLEFLRDQPQF--QNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEA 313 (368)
T ss_dssp TTHHHHHSHHH--HHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCC
T ss_pred hHHHHhcChHH--HHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccC
Confidence 35666665 35 678888888888899999998 78999988888866543110
Q ss_pred ------hc-cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 218 ------CR-QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 218 ------~~-~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
+. ..+.++|++|++|||++..|++||++|+||+++|++|||+|+++
T Consensus 314 ~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~~~d 366 (368)
T 1oqy_A 314 PQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFD 366 (368)
T ss_dssp TTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHHCC
T ss_pred CccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhCcCc
Confidence 11 35889999999999999999999999999999999999999775
No 4
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=158.70 Aligned_cols=102 Identities=19% Similarity=0.347 Sum_probs=80.3
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHhhc-C---CCcchHHHHHh-HHHHhh-hh--------hccccHHH
Q 017845 161 VDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDL-T---NPESNSAIQLY-IESRKR-KR--------CRQAADAK 225 (365)
Q Consensus 161 vd~~~l~~L~~MGF~~~~Ar~ALr~t~n-dve~Al~~L-~---~p~~~~~L~~~-~~~~~~-~~--------~~~~~~~~ 225 (365)
||++.|++|++|||++..|++||+.|+| +++.|++|| . +|++.+++..+ ...... .. .+.+++..
T Consensus 2 ~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~~ 81 (126)
T 2lbc_A 2 IDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEI 81 (126)
T ss_dssp CCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHHH
Confidence 5788999999999999999999999977 899999998 3 34432222110 000000 00 22368899
Q ss_pred HHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845 226 IEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPG 262 (365)
Q Consensus 226 I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~ 262 (365)
|.+|++|||++..|+.||++|+||+++|++|||+|.+
T Consensus 82 v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 82 VAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999987
No 5
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.75 E-value=4e-18 Score=144.37 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHhhc-CC-----CcchHH-HHHhHHHHh-hhhhccccHHHHHHHHhCCC
Q 017845 163 IEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TN-----PESNSA-IQLYIESRK-RKRCRQAADAKIEQLVAMGF 234 (365)
Q Consensus 163 ~~~l~~L~~MGF~~~~Ar~ALr~t~ndve~Al~~L-~~-----p~~~~~-L~~~~~~~~-~~~~~~~~~~~I~~L~~MGF 234 (365)
.+.|++|++|||++..|++||+.|+||+++|++|| .+ +++... ++..+.... ......++...|.+|++|||
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF 88 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGF 88 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCC
Confidence 35799999999999999999999999999999998 32 222221 112221110 01112346788999999999
Q ss_pred CHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845 235 ERPRVIEACRAGGDDIHQIMLQLLGEP 261 (365)
Q Consensus 235 ~~~~A~~AL~~~~nnve~A~e~Ll~~~ 261 (365)
+++.|++||+.|+||+++|++|||...
T Consensus 89 ~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 89 ELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 999999999999999999999999753
No 6
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.8e-14 Score=152.66 Aligned_cols=108 Identities=15% Similarity=0.240 Sum_probs=81.8
Q ss_pred cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCC---CCcC
Q 017845 86 QLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPL---KKAV 161 (365)
Q Consensus 86 ~l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~v 161 (365)
.+.+|++.|++|++|||++.+|++||++++| +++.||+||++|+++++...+-... ...+..+. ...+
T Consensus 648 ~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~--------~~~~~~s~~~~~~~~ 719 (854)
T 3ihp_A 648 APMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP--------GSSGPGSTSAAADPP 719 (854)
T ss_dssp -----CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC----------------------C
T ss_pred ccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCccccccccccc--------ccccccccccccCCC
Confidence 5678999999999999999999999999976 6999999999999998765321100 00001010 1357
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHhhc-CCCc
Q 017845 162 DIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNPE 201 (365)
Q Consensus 162 d~~~l~~L~~MGF~~~~Ar~ALr~t~ndve~Al~~L-~~p~ 201 (365)
+++.|.+|.+|||+..+|++||+.++||+++|++|+ +||+
T Consensus 720 ~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d 760 (854)
T 3ihp_A 720 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHID 760 (854)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcc
Confidence 899999999999999999999999999999999997 5554
No 7
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.38 E-value=1.8e-13 Score=103.92 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=45.6
Q ss_pred cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHh
Q 017845 86 QLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKE 135 (365)
Q Consensus 86 ~l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~ 135 (365)
.-.+|++.|++|++|||++.+|++||++|+| |++.||+||++|+++++..
T Consensus 5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d 55 (64)
T 2crn_A 5 SSGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLD 55 (64)
T ss_dssp SCCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccc
Confidence 3467899999999999999999999999987 9999999999999987654
No 8
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.38 E-value=1.4e-13 Score=104.57 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=44.2
Q ss_pred hccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHH
Q 017845 84 FFQLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRV 133 (365)
Q Consensus 84 ~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~ 133 (365)
|.++ +|++.|++|++|||++.+|++||++|+| |+++|++||++|+++++
T Consensus 14 ya~~-~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 14 PGTI-KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp SCSS-SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred cccc-CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 3344 7899999999999999999999999998 99999999999998753
No 9
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.37 E-value=2.8e-13 Score=102.82 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHh-CCCHHHHHHHHHHhhhhHHHh
Q 017845 87 LQVPDESLSLVMSMGFKEQDAKRALRIC-SQDVGSAIDFLVEEKAKRVKE 135 (365)
Q Consensus 87 l~vd~~~L~~LmeMGF~~~~arrALra~-~~dve~Av~~L~e~~~d~~~~ 135 (365)
..+|+++|++||+|||++.+|++||++| ++|+++|++||++|+++++..
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~d 55 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVD 55 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcccc
Confidence 5689999999999999999999999999 689999999999999987643
No 10
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.6e-13 Score=104.48 Aligned_cols=50 Identities=10% Similarity=0.229 Sum_probs=45.7
Q ss_pred cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHh
Q 017845 86 QLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKE 135 (365)
Q Consensus 86 ~l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~ 135 (365)
...+|+++|++||+|||++.+|++||++|+| |+++|++||++|+++++..
T Consensus 5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d 55 (74)
T 2dag_A 5 SSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFA 55 (74)
T ss_dssp CCSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSS
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccc
Confidence 3568999999999999999999999999986 8999999999999987654
No 11
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.36 E-value=3e-13 Score=100.86 Aligned_cols=42 Identities=29% Similarity=0.503 Sum_probs=40.1
Q ss_pred cHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 222 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 222 ~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
.++.|.+|++|||++++|+.||++|+||+|+|++|||+|+++
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 567899999999999999999999999999999999999886
No 12
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.34 E-value=6.2e-13 Score=92.93 Aligned_cols=41 Identities=29% Similarity=0.539 Sum_probs=38.6
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
+++++|++|++|||++.+|++||++|+||++.|++||++|+
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 56889999999999999999999999999999999999873
No 13
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.2e-13 Score=100.48 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHh
Q 017845 88 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKE 135 (365)
Q Consensus 88 ~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~ 135 (365)
.+++++|++|++|||++.+|++||++|+||+++|++||++|+++++..
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~d~d 54 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAE 54 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSCCSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCcccc
Confidence 578999999999999999999999999999999999999999886543
No 14
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.5e-13 Score=104.83 Aligned_cols=49 Identities=27% Similarity=0.461 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHh
Q 017845 87 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKE 135 (365)
Q Consensus 87 l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~ 135 (365)
..+|+++|++||+|||++.+|++||++|+||++.|++||++|+++++..
T Consensus 26 ~~~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d~d 74 (83)
T 2dai_A 26 ERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTID 74 (83)
T ss_dssp SSCCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCSTTC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcccc
Confidence 4579999999999999999999999999999999999999999987643
No 15
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.30 E-value=4.5e-13 Score=104.24 Aligned_cols=64 Identities=19% Similarity=0.392 Sum_probs=51.5
Q ss_pred HHHhhc----CCCcchHHHHHhHHHHhhhhhccccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 192 KALDDL----TNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 192 ~Al~~L----~~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
.|++|| .+|++..+|.. ....++++.|.+|++|||++.+|+.||++|+||+++|++|||+|+++
T Consensus 3 ~am~wl~~h~dDpd~d~pl~~--------~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 3 SGSSGLLSHMDDPDIDAPISH--------QTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp CCCCCCSSCCSCSCSSCCSCC--------SSCSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHcCCCCCccCCCCC--------CCCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 578897 35765433211 01246899999999999999999999999999999999999999876
No 16
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.28 E-value=2.3e-12 Score=96.09 Aligned_cols=40 Identities=18% Similarity=0.413 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
++.|.+|++|||++.+|++||++|+||||+|++|||.|++
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 5789999999999999999999999999999999999975
No 17
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.27 E-value=1.8e-12 Score=93.30 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=38.6
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 90 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 90 d~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
++++|++|++|||++.+|++||++|+||+++|++||+++++
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~gip 48 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIP 48 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHCCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999999864
No 18
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.26 E-value=3.4e-12 Score=99.30 Aligned_cols=45 Identities=24% Similarity=0.498 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhH
Q 017845 88 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR 132 (365)
Q Consensus 88 ~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~ 132 (365)
.+++++|++|++|||++.+|++||++|+||+++|++||++|.+++
T Consensus 27 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 27 DIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp SSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 589999999999999999999999999999999999999998764
No 19
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.26 E-value=4.3e-12 Score=101.24 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=45.9
Q ss_pred cCCCCHHHHHHHHhCCCCHHHHHHHHHHhC-CCHHHHHHHHHHhhhhHHHh
Q 017845 86 QLQVPDESLSLVMSMGFKEQDAKRALRICS-QDVGSAIDFLVEEKAKRVKE 135 (365)
Q Consensus 86 ~l~vd~~~L~~LmeMGF~~~~arrALra~~-~dve~Av~~L~e~~~d~~~~ 135 (365)
.+.+|+++|++||+|||++.+|++||++++ +|+++|++||++|+++++..
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d 75 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDID 75 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTT
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccc
Confidence 567899999999999999999999999996 69999999999999987654
No 20
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.9e-12 Score=90.57 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 87 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 87 l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
..+|+++|.+|++|||++.+|++||++|+ |+++|++||++|+
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 6 SGVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp CSSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 46899999999999999999999999995 9999999999884
No 21
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.25 E-value=5.6e-12 Score=95.38 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhH
Q 017845 88 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR 132 (365)
Q Consensus 88 ~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~ 132 (365)
.+|+++|++|++|||++.+|++||++|+||+++|++||++|..+.
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 478999999999999999999999999999999999999997654
No 22
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.25 E-value=8e-12 Score=94.53 Aligned_cols=45 Identities=18% Similarity=0.388 Sum_probs=41.7
Q ss_pred ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCCC
Q 017845 221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNP 265 (365)
Q Consensus 221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~~ 265 (365)
++++.|.+|++|||++.+|+.||++|+||+++|++|||+|..+..
T Consensus 8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~~ 52 (63)
T 1wji_A 8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKP 52 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcc
Confidence 578899999999999999999999999999999999999977643
No 23
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=9.4e-12 Score=97.03 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=41.2
Q ss_pred cccHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 017845 220 QAADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGS 263 (365)
Q Consensus 220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~n-nve~A~e~Ll~~~~~ 263 (365)
.++++.|.+|++|||++..|+.||++|+| |+++|++|||+|.++
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 7 GLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp SSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 46889999999999999999999999997 899999999999876
No 24
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.22 E-value=6.2e-12 Score=136.73 Aligned_cols=104 Identities=19% Similarity=0.309 Sum_probs=79.9
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHhhc----CCCcchHHHHHhHHH-Hhhhh--hccccHHHHHHHHhC
Q 017845 161 VDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDL----TNPESNSAIQLYIES-RKRKR--CRQAADAKIEQLVAM 232 (365)
Q Consensus 161 vd~~~l~~L~~MGF~~~~Ar~ALr~t~n-dve~Al~~L----~~p~~~~~L~~~~~~-~~~~~--~~~~~~~~I~~L~~M 232 (365)
++.+.|++|++|||++..|++||..++| +++.|++|| .+|++..++..+... ..+.. ...++++.|.+|.+|
T Consensus 651 ~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~m 730 (854)
T 3ihp_A 651 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSM 730 (854)
T ss_dssp --CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTT
T ss_pred cCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHc
Confidence 4567899999999999999999999977 699999997 456655443221000 00011 124688999999999
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCC
Q 017845 233 GFERPRVIEACRAGGDDIHQIMLQLLGEPGSN 264 (365)
Q Consensus 233 GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~ 264 (365)
||+..+|++||+.++||+++|++|||+|+++.
T Consensus 731 Gf~~~~a~~aL~~t~~~~eraidwlfs~~d~~ 762 (854)
T 3ihp_A 731 GFSRDQALKALRATNNSLERAVDWIFSHIDDL 762 (854)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcCcHHHHHHhhhcCcccc
Confidence 99999999999999999999999999998763
No 25
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.21 E-value=1.2e-11 Score=86.39 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=37.9
Q ss_pred ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
++++.|.+|++|||+++.|+.||++|+||+++|++|||+|
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 4678899999999999999999999999999999999987
No 26
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.18 E-value=2.3e-11 Score=96.70 Aligned_cols=48 Identities=29% Similarity=0.342 Sum_probs=43.6
Q ss_pred hccccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCCC
Q 017845 218 CRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNP 265 (365)
Q Consensus 218 ~~~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~~ 265 (365)
+..++++.|.+|++|||++.+|+.||++|+||+++|++|||+|++..+
T Consensus 25 ~~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip 72 (83)
T 1veg_A 25 QASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGSLP 72 (83)
T ss_dssp SCCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCC
T ss_pred cCCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCc
Confidence 345688999999999999999999999999999999999999988633
No 27
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.16 E-value=1.4e-11 Score=88.01 Aligned_cols=43 Identities=28% Similarity=0.254 Sum_probs=40.5
Q ss_pred ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
.+.++|.+|++|||++..|++||.+|++|+++|++|||+|+++
T Consensus 3 ~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d 45 (47)
T 1dv0_A 3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFD 45 (47)
T ss_dssp CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCC
Confidence 3678999999999999999999999999999999999999875
No 28
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.15 E-value=3.3e-11 Score=95.81 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=42.7
Q ss_pred cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845 86 QLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAK 131 (365)
Q Consensus 86 ~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d 131 (365)
...+++++|++||+|||++.+|++||++|+||+++|++||++|.++
T Consensus 25 ~~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 25 QASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp SCCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 3457899999999999999999999999999999999999999874
No 29
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.12 E-value=6.9e-12 Score=89.56 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=40.7
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhH
Q 017845 90 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR 132 (365)
Q Consensus 90 d~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~ 132 (365)
++++|++|++|||++..|++||.+|++|++.|++||++|++++
T Consensus 4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~ 46 (47)
T 1dv0_A 4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDD 46 (47)
T ss_dssp CHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCC
Confidence 5789999999999999999999999999999999999999774
No 30
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.12 E-value=4.4e-11 Score=90.69 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=40.5
Q ss_pred ccHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 017845 221 AADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGS 263 (365)
Q Consensus 221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~n-nve~A~e~Ll~~~~~ 263 (365)
++++.|.+|++|||++..|+.||++|+| |+++|++|||+|+++
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGP 61 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 5677899999999999999999999998 999999999999876
No 31
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.11 E-value=2.3e-11 Score=97.27 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=42.3
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHH
Q 017845 89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRV 133 (365)
Q Consensus 89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~ 133 (365)
+|+++|.+|++|||++.+|++||+.+++|+++|++||++|+.+++
T Consensus 20 ~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 20 IMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 478999999999999999999999999999999999999998865
No 32
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.09 E-value=8.8e-11 Score=91.27 Aligned_cols=43 Identities=21% Similarity=0.465 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 88 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 88 ~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
...+++|++||+|||++.+|++||+.|+||+++|++||++|.+
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 3468999999999999999999999999999999999999864
No 33
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7e-11 Score=84.05 Aligned_cols=41 Identities=29% Similarity=0.445 Sum_probs=38.2
Q ss_pred cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845 220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEP 261 (365)
Q Consensus 220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~ 261 (365)
.++++.|.+|++|||++..|+.||++|+ |+++|++|||+|+
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 7 GVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp SSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 4688999999999999999999999995 8999999999985
No 34
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.09 E-value=6.2e-11 Score=85.23 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=37.6
Q ss_pred ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
..++.|.+|++|||++++|+.||++|+||+++|++|||++
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3577899999999999999999999999999999999985
No 35
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.08 E-value=6.3e-11 Score=89.89 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=40.7
Q ss_pred cccHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 017845 220 QAADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGS 263 (365)
Q Consensus 220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~n-nve~A~e~Ll~~~~~ 263 (365)
.+++..|.+|++|||++..|++||++|+| |++.|++|||+|.++
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 7 GSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp CCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 45777899999999999999999999988 999999999999876
No 36
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.1e-11 Score=89.51 Aligned_cols=44 Identities=18% Similarity=0.377 Sum_probs=41.2
Q ss_pred cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
.++++.|.+|++|||++..|+.||++|+||+++|++|||+|.++
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 36788999999999999999999999999999999999998765
No 37
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.08 E-value=1.1e-10 Score=79.82 Aligned_cols=36 Identities=31% Similarity=0.548 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 017845 91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 126 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~ 126 (365)
+++|++|++|||++.+|++||++|+||++.|++||+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 578999999999999999999999999999999984
No 38
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.08 E-value=1.3e-10 Score=84.83 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 91 DESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 91 ~~~L~~LmeMGF-~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
+++|.+|++||| ++..|++||++|+||+++|++||++|.
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 467999999999 999999999999999999999999985
No 39
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.07 E-value=1.5e-10 Score=89.91 Aligned_cols=44 Identities=36% Similarity=0.579 Sum_probs=41.0
Q ss_pred cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
.+.++.|.+|++|||++++|+.||++|+||+++|++|||+|.++
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 45788999999999999999999999999999999999998765
No 40
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.07 E-value=1.1e-10 Score=88.43 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=40.7
Q ss_pred cccHHHHHHHHhCCCCHHHHHHHHHHc-CCCHHHHHHHHhcCCCC
Q 017845 220 QAADAKIEQLVAMGFERPRVIEACRAG-GDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~-~nnve~A~e~Ll~~~~~ 263 (365)
.++++.|.+|++|||++..|+.||++| ++|+++|++|||+|+++
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 457788999999999999999999999 69999999999999876
No 41
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.04 E-value=1.7e-10 Score=84.01 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 91 DESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 91 ~~~L~~LmeMGF-~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
+++|.+|++||| ++..|++||++|+||+++|++||+.|
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 678999999999 99999999999999999999999987
No 42
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.04 E-value=2.4e-10 Score=83.12 Aligned_cols=40 Identities=40% Similarity=0.591 Sum_probs=37.5
Q ss_pred cHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845 222 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEP 261 (365)
Q Consensus 222 ~~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~ 261 (365)
-+..|.+|++||| ++..++.||++|+||+++|++|||+|+
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 4678999999999 999999999999999999999999875
No 43
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=2e-10 Score=91.39 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=41.4
Q ss_pred cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
.++++.|.+|++|||++..|+.||++|+||+++|++|||+|+++
T Consensus 27 ~~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 27 RVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp SCCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 36889999999999999999999999999999999999999876
No 44
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.02 E-value=3.1e-10 Score=82.83 Aligned_cols=39 Identities=38% Similarity=0.600 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845 223 DAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEP 261 (365)
Q Consensus 223 ~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~ 261 (365)
.+.|.+|++||| ++..++.||++|+||+++|++|||+|+
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 467999999999 999999999999999999999999985
No 45
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.97 E-value=6e-10 Score=79.14 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 91 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 91 ~~~L~~LmeMGF~-~~~arrALra~~~dve~Av~~L~e~ 128 (365)
+++|++|++|||+ +..+++||++++||+++|++||++|
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 6789999999996 6677999999999999999999975
No 46
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.96 E-value=7.7e-10 Score=75.46 Aligned_cols=37 Identities=35% Similarity=0.465 Sum_probs=34.8
Q ss_pred cHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 017845 222 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLL 258 (365)
Q Consensus 222 ~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll 258 (365)
.++.|.+|++|||+++.|+.||+.|+||+++|++|||
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4568999999999999999999999999999999996
No 47
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.95 E-value=9.4e-10 Score=87.69 Aligned_cols=45 Identities=24% Similarity=0.306 Sum_probs=41.3
Q ss_pred ccccHHHHHHHHhCCCCHHHHHHHHHHcC-CCHHHHHHHHhcCCCC
Q 017845 219 RQAADAKIEQLVAMGFERPRVIEACRAGG-DDIHQIMLQLLGEPGS 263 (365)
Q Consensus 219 ~~~~~~~I~~L~~MGF~~~~A~~AL~~~~-nnve~A~e~Ll~~~~~ 263 (365)
..+++..|.+|++|||++..|++||+.++ +|+++|++|||+|.++
T Consensus 26 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 26 PVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp CCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 35689999999999999999999999996 6999999999999876
No 48
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.92 E-value=1e-09 Score=87.68 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=41.3
Q ss_pred cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
+++++.|.+|++|||++.+|+.||+.+++|+++|++|||+|..+
T Consensus 19 ~~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 19 WIMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 35688999999999999999999999999999999999999876
No 49
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.91 E-value=1.5e-09 Score=77.05 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 223 DAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 223 ~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
+..|.+|++||| ++..++.||++++||+++|++|||++
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 567999999999 57788999999999999999999975
No 50
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.90 E-value=1.2e-09 Score=80.20 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCCHHH-HHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845 91 DESLSLVMSMGFKEQD-AKRALRICSQDVGSAIDFLVEEKAK 131 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~-arrALra~~~dve~Av~~L~e~~~d 131 (365)
+++|++|++|||+..+ +++||++|+|||++|++||+++.+.
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 6789999999996655 6999999999999999999998653
No 51
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.87 E-value=1.9e-09 Score=80.17 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 91 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 91 ~~~L~~LmeMGF~-~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
+++|++|++|||+ +..+++||++++||+++|++||++|.
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 6689999999995 77789999999999999999999874
No 52
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.87 E-value=1.5e-09 Score=84.55 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845 91 DESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEKAK 131 (365)
Q Consensus 91 ~~~L~~LmeMGF-~~~~arrALra~~~dve~Av~~L~e~~~d 131 (365)
+++|++|++||| ++..+++||++++|||++|++||+.|++.
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 679999999999 57888999999999999999999999764
No 53
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.86 E-value=1.7e-09 Score=79.27 Aligned_cols=41 Identities=29% Similarity=0.438 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCH-HHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 223 DAKIEQLVAMGFER-PRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 223 ~~~I~~L~~MGF~~-~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
.+.|.+|++|||+. ..++.||++|+||+++|++|||++++.
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 66899999999955 557999999999999999999998654
No 54
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.86 E-value=1.6e-09 Score=82.70 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCCHHHH-HHHHHHhCCCHHHHHHHHHHhhhh
Q 017845 91 DESLSLVMSMGFKEQDA-KRALRICSQDVGSAIDFLVEEKAK 131 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~a-rrALra~~~dve~Av~~L~e~~~d 131 (365)
..+|++|++|||...++ ++||++|+|||++||+||++|.++
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 45899999999976655 999999999999999999999876
No 55
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.85 E-value=3.1e-09 Score=82.75 Aligned_cols=42 Identities=36% Similarity=0.559 Sum_probs=38.2
Q ss_pred cHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 222 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 222 ~~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
-++.|.+|++||| +++.++.||++++||+++|++|||++++.
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4678999999999 68899999999999999999999998665
No 56
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.84 E-value=2.6e-09 Score=79.48 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845 223 DAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEP 261 (365)
Q Consensus 223 ~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~ 261 (365)
+..|.+|++||| +++.++.||++++||+++|++|||+++
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 567999999999 588889999999999999999999885
No 57
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.83 E-value=3.4e-09 Score=80.90 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCCHH-HHHHHHHHcCCCHHHHHHHHhcCCCCCC
Q 017845 223 DAKIEQLVAMGFERP-RVIEACRAGGDDIHQIMLQLLGEPGSNP 265 (365)
Q Consensus 223 ~~~I~~L~~MGF~~~-~A~~AL~~~~nnve~A~e~Ll~~~~~~~ 265 (365)
...|.+|++|||... .++.||++|+||+++|++|||++++..+
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCccC
Confidence 457999999999655 5599999999999999999999977643
No 58
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.74 E-value=1.1e-08 Score=73.78 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=35.5
Q ss_pred cHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 017845 222 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLG 259 (365)
Q Consensus 222 ~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~ 259 (365)
.++.|.+|++|||+++.|++||+.++||++.|+++|+.
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34899999999999999999999999999999999974
No 59
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.74 E-value=2.4e-08 Score=89.27 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCCHHHHHhhc--CCCcchHHHHHhHHHHhhh--------------------------------------
Q 017845 177 ELVAEALRRNENDSQKALDDL--TNPESNSAIQLYIESRKRK-------------------------------------- 216 (365)
Q Consensus 177 ~~Ar~ALr~t~ndve~Al~~L--~~p~~~~~L~~~~~~~~~~-------------------------------------- 216 (365)
.+.|..+++++--+..-++.| +||.+.+.|+.+++.+.+-
T Consensus 36 ~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep~~~~~~~m~~~~~~~~~g~~~~~~~~~g~~~~~~ 115 (171)
T 2qsf_X 36 LSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQ 115 (171)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHCCC--------------------------------
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCcccchhhhhcccccccccccccccccccccccccC
Confidence 457788888888888888877 6888877776665432100
Q ss_pred --------hhc-cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845 217 --------RCR-QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPG 262 (365)
Q Consensus 217 --------~~~-~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~ 262 (365)
.+. +.+.++|.+|++|||++..|++||.+|++|++.|++|||++..
T Consensus 116 ~~~~~~~~i~~tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~ 170 (171)
T 2qsf_X 116 GEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHA 170 (171)
T ss_dssp -----EECCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC--
T ss_pred CCCCCcccCCCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 011 2467899999999999999999999999999999999998753
No 60
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.69 E-value=2.4e-08 Score=72.08 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 017845 91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 127 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e 127 (365)
++.|++||+|||++.+|++||+.++|||+.|.++|.|
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4899999999999999999999999999999999976
No 61
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.65 E-value=2.6e-08 Score=72.22 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=36.7
Q ss_pred ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
+.+..|.+|++|||+++.|++||..++||++.|+++|+..
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3457799999999999999999999999999999999864
No 62
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.57 E-value=4.1e-08 Score=71.36 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=37.1
Q ss_pred ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
+.+..|.+|++|||+++.|++||..++||++.|.+.|++-
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999864
No 63
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.54 E-value=1.1e-07 Score=68.81 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=36.9
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
..+..|.+||+|||+++++++||..++|||+.|.+.|.+-
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3467899999999999999999999999999999999865
No 64
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.52 E-value=9.3e-08 Score=69.51 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=36.5
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 90 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 90 d~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
.++.|++||+|||+++.+++||..++|||+.|.+.|.|-
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 367899999999999999999999999999999999875
No 65
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.51 E-value=9.7e-08 Score=69.31 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHH
Q 017845 88 QVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLV 126 (365)
Q Consensus 88 ~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~ 126 (365)
.||...|++|++|||+..+|.+||+.|+| .++.||+||.
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 57899999999999999999999999987 6999999985
No 66
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.47 E-value=1.5e-07 Score=78.14 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=37.4
Q ss_pred cHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845 222 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEPG 262 (365)
Q Consensus 222 ~~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~~ 262 (365)
-++.|.+|++||| +++.++.||++++||+++|++|||++++
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 3678999999999 5689999999999999999999998864
No 67
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.46 E-value=1.7e-07 Score=77.89 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 91 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 91 ~~~L~~LmeMGF~-~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
+++|++|.+|||+ +..+++||++++|||++||+||+++.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 7899999999995 57999999999999999999999874
No 68
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.41 E-value=3.1e-07 Score=64.42 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 223 ~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
+..|.+|++|||+++.|++||-.++||++.|++.|+..
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 46799999999999999999999999999999999753
No 69
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.35 E-value=3.9e-07 Score=66.17 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHhhc
Q 017845 160 AVDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDL 197 (365)
Q Consensus 160 ~vd~~~l~~L~~MGF~~~~Ar~ALr~t~n-dve~Al~~L 197 (365)
.++.+.+++|++|||++..|.+||++|+| .++.|++||
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL 45 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYI 45 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHH
Confidence 67889999999999999999999999998 799999998
No 70
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.26 E-value=1.3e-06 Score=61.19 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
+..++.||+|||+.+.+++||-.++|||+.|.+-|.+-
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 67899999999999999999999999999999998764
No 71
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.21 E-value=1.1e-06 Score=87.30 Aligned_cols=44 Identities=27% Similarity=0.439 Sum_probs=40.6
Q ss_pred ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCC
Q 017845 221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSN 264 (365)
Q Consensus 221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~ 264 (365)
..++.|.+|++|||++.+|+.||++++||+++|++|||++..+.
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~ 210 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 210 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 46889999999999999999999999999999999999986653
No 72
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.10 E-value=2.3e-06 Score=70.42 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=38.6
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845 91 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEKAK 131 (365)
Q Consensus 91 ~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~~d 131 (365)
++.|.+||+| ||++.+|+.||..|+||++.|+++|++...+
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 5789999999 9999999999999999999999999999753
No 73
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.08 E-value=5.3e-06 Score=75.52 Aligned_cols=39 Identities=38% Similarity=0.447 Sum_probs=37.0
Q ss_pred cHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 222 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 222 ~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
-++.|.+|++|||++++|+.||..+++|+++|+++||+|
T Consensus 163 ~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 163 YTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 378999999999999999999999999999999999975
No 74
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=97.94 E-value=8.1e-06 Score=74.31 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
+++|++|++|||++..|+.||+.+++|+++|++||+++
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 68999999999999999999999999999999999974
No 75
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.94 E-value=6.7e-06 Score=60.05 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=36.7
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 90 PDESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 90 d~~~L~~LmeMGF-~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
+..+|.+|.+||| ....-++||+.++|||++||+.|....
T Consensus 9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 9 TAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 4678999999999 999999999999999999999998764
No 76
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.91 E-value=8.5e-06 Score=59.53 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=37.3
Q ss_pred cHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 222 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 222 ~~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
....+.+|.+||| +++.-+.||+.++||+++|++.|+..+..
T Consensus 9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 9 TAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 3457899999999 99999999999999999999999976544
No 77
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.86 E-value=9.1e-06 Score=72.56 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
.++|.+|++|||++..|+.|+.+|++|++.|++||+++..
T Consensus 131 ~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~ 170 (171)
T 2qsf_X 131 DQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHA 170 (171)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC--
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 3899999999999999999999999999999999998864
No 78
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.82 E-value=2.1e-05 Score=64.76 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=39.3
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCCCccc
Q 017845 223 DAKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPGSNPTAA 268 (365)
Q Consensus 223 ~~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~~~~~ 268 (365)
++.|..|++| ||+++.|+.||..|+||+++|+++||+... +...|
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~-~~~~W 85 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP-DTHSW 85 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS-SCSSC
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC-cCCce
Confidence 5679999999 999999999999999999999999998764 33344
No 79
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=97.54 E-value=0.00052 Score=60.26 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHH-HhhhhHHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHHhC-CCCHHH
Q 017845 101 GFKEQDAKRALRICSQDVGSAIDFLVEEKAKRV-KEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSI-GFEKEL 178 (365)
Q Consensus 101 GF~~~~arrALra~~~dve~Av~~L~e~~~d~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~vd~~~l~~L~~M-GF~~~~ 178 (365)
||+..+.--||..|++.. =++||.+.-+..- .+.. ....+|. .. .++...
T Consensus 28 GfspEEV~aAl~~~g~~~--P~~WLk~ewp~ll~~V~~----------la~~~~~----------------~~g~~s~~E 79 (162)
T 4dbg_B 28 GACPEEIFSALQYSGTEV--PLQWLRSELPYVLEMVAE----------LAGQQDP----------------GLGAFSCQE 79 (162)
T ss_dssp CCCHHHHHHHHHHHTCCC--CHHHHHHHSCSHHHHHHH----------HHHHHCG----------------GGCCCCHHH
T ss_pred CCCHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHH----------HHHHhCC----------------CCCcccHHH
Confidence 999999999997665322 6789988866522 1100 1111121 11 267789
Q ss_pred HHHHHHhcCCCHHHHHhhcCCCcchHHHHHhHHHHhhhhhccccHHHHHHHHhCC-CCHHHHHHHHHHcCCCHHHHHHHH
Q 017845 179 VAEALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMG-FERPRVIEACRAGGDDIHQIMLQL 257 (365)
Q Consensus 179 Ar~ALr~t~ndve~Al~~L~~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L~~MG-F~~~~A~~AL~~~~nnve~A~e~L 257 (365)
|++||+...||+++|+... ++. ...++..|.++| |+++.+..||...+||++.|+--|
T Consensus 80 Ar~Aw~~~~Gd~~~Av~~c--------i~~-------------R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 80 ARRAWLDRHGNLDEAVEEC--------VRT-------------RRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHTTTCHHHHHHHH--------HHH-------------HHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHccCChHHHHHHH--------HHH-------------HHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999999741 111 234688999999 788899999999999999999765
Q ss_pred h
Q 017845 258 L 258 (365)
Q Consensus 258 l 258 (365)
.
T Consensus 139 q 139 (162)
T 4dbg_B 139 Q 139 (162)
T ss_dssp H
T ss_pred H
Confidence 4
No 80
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=97.48 E-value=0.00026 Score=62.17 Aligned_cols=68 Identities=28% Similarity=0.348 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHHhCC-CCHHHH
Q 017845 101 GFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIG-FEKELV 179 (365)
Q Consensus 101 GF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vd~~~l~~L~~MG-F~~~~A 179 (365)
.|+..+||.||+..+||++.|+......+. .++..|++.| |++.+|
T Consensus 74 ~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R~---------------------------------~K~~eL~s~G~~~~~~~ 120 (162)
T 4dbg_B 74 AFSCQEARRAWLDRHGNLDEAVEECVRTRR---------------------------------RKVQELQSLGFGPEEGS 120 (162)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHH---------------------------------HHHHHHHHTTCCGGGTH
T ss_pred cccHHHHHHHHHHccCChHHHHHHHHHHHH---------------------------------HHHHHHHhcCCchHHHH
Confidence 378899999999999999999998655431 2367899999 788999
Q ss_pred HHHHHhcCCCHHHHHhhcCCCc
Q 017845 180 AEALRRNENDSQKALDDLTNPE 201 (365)
Q Consensus 180 r~ALr~t~ndve~Al~~L~~p~ 201 (365)
.+||+++.||++.|+-.|+-|.
T Consensus 121 ~~aL~~~~Gdv~~Al~eLqr~l 142 (162)
T 4dbg_B 121 LQALFQHGGDVSRALTELQRQR 142 (162)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999999998775543
No 81
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.40 E-value=0.00027 Score=66.72 Aligned_cols=38 Identities=37% Similarity=0.434 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 223 ~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
.+.|.+|++|||++..|+.||..++.|+++|+++||++
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~~ 253 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLSN 253 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 68999999999999999999999999999999999974
No 82
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.03 E-value=0.00084 Score=50.61 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 88 QVPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 88 ~vd~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
.|..+.|..|.++ |.+..+|++||..|+||++.|+.||.+.
T Consensus 7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4567889999987 9999999999999999999999999644
No 83
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=96.95 E-value=0.00083 Score=63.35 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 017845 91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 127 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e 127 (365)
+++|.+|++|||++..|+.||..+++|++.|+++|+.
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 6899999999999999999999999999999999986
No 84
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.38 E-value=0.0042 Score=45.99 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=39.7
Q ss_pred cccHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 220 QAADAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 220 ~~~~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
.+.++.|.+|.+| +++...++.+|++|+||++.|++.|+....+
T Consensus 7 ~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 4578899999999 7899999999999999999999999987554
No 85
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=96.33 E-value=0.0039 Score=46.96 Aligned_cols=38 Identities=21% Similarity=0.097 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845 160 AVDIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL 197 (365)
Q Consensus 160 ~vd~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L 197 (365)
.+..+.|..|.+. |.....|++||..++||++.|++||
T Consensus 7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4677889999998 9999999999999999999999998
No 86
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.99 E-value=0.0079 Score=44.49 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845 87 LQVPDESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEKAK 131 (365)
Q Consensus 87 l~vd~~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e~~~d 131 (365)
..+.++.|.+|.+| +++..-.+.+|++|+||+++|++-|++...+
T Consensus 6 ~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 6 SGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp SSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 45789999999999 5578889999999999999999999886543
No 87
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.73 E-value=0.012 Score=42.04 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=35.2
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 91 DESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 91 ~~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
++.+..|++| .-+...++.+|+.++||+++|++-|.+..+
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 5779999999 556889999999999999999999998743
No 88
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=95.60 E-value=0.0072 Score=43.47 Aligned_cols=37 Identities=38% Similarity=0.535 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCHHHHH--HHHHHhCCCHHHHHHHHHH
Q 017845 91 DESLSLVMSMGFKEQDAK--RALRICSQDVGSAIDFLVE 127 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~ar--rALra~~~dve~Av~~L~e 127 (365)
.++|+|++.|||+-...- +.|...+||+.+|++-|..
T Consensus 11 ~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQY 49 (52)
T ss_dssp HHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhhh
Confidence 478999999999988886 6788889999999987753
No 89
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.93 E-value=0.027 Score=40.12 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=34.6
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 223 DAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 223 ~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
++.+..|.+| .-+...++.+|+.++||+++|++.|++-
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4668899999 7899999999999999999999999875
No 90
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=93.93 E-value=0.04 Score=39.60 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCHHHH--HHHHHHcCCCHHHHHHHHh
Q 017845 223 DAKIEQLVAMGFERPRV--IEACRAGGDDIHQIMLQLL 258 (365)
Q Consensus 223 ~~~I~~L~~MGF~~~~A--~~AL~~~~nnve~A~e~Ll 258 (365)
.++|.++.+|||+.+-. ...|...++|+.+|++.|.
T Consensus 11 ~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 56789999999999876 4889999999999999874
No 91
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.82 E-value=0.073 Score=40.31 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=36.9
Q ss_pred ccHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845 221 AADAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGEPG 262 (365)
Q Consensus 221 ~~~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~ 262 (365)
+-+..+.+|.+| -+++...+.+|++|+||++.|++-|+.-..
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 467889999999 568999999999999999999999987543
No 92
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=93.81 E-value=0.067 Score=48.55 Aligned_cols=38 Identities=29% Similarity=0.277 Sum_probs=33.3
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 92 ESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 92 ~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
..|..|-++ |.+..+|++||-.|+||++.|++||-+.-
T Consensus 5 ~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG 43 (196)
T 1aip_C 5 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERG 43 (196)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 456777777 99999999999999999999999997753
No 93
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=93.81 E-value=0.66 Score=45.11 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=77.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHH
Q 017845 91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELV 170 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vd~~~l~~L~ 170 (365)
+..|..|.+|||+..+..++|...-+-... . . ...|+.|.
T Consensus 47 e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----------~---l---------------------------~~~i~~L~ 86 (335)
T 4fp9_B 47 ERVMSSLLDMGFSNAHINELLSVRRGASLQ----------Q---L---------------------------LDIISEFI 86 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----------H---H---------------------------HHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhCcccchh----------H---H---------------------------HHHHHHHH
Confidence 456888999999999999998875431100 0 0 12467778
Q ss_pred hCCCCHHHHHHHHHhcCCC-------HHHHHhhcC-----CCcchHHHHHhHHHHhhhhhccccHHHHHHH-HhCCCCHH
Q 017845 171 SIGFEKELVAEALRRNEND-------SQKALDDLT-----NPESNSAIQLYIESRKRKRCRQAADAKIEQL-VAMGFERP 237 (365)
Q Consensus 171 ~MGF~~~~Ar~ALr~t~nd-------ve~Al~~L~-----~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L-~~MGF~~~ 237 (365)
.+||+...+.++|+.++.- +..-+.||. ..++...+...+.-...+ ...-...+.-| ..|||+..
T Consensus 87 ~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s--~e~i~~~v~~L~~~lGfS~~ 164 (335)
T 4fp9_B 87 LLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR--QQDINDTVRLLKEKCLFTVQ 164 (335)
T ss_dssp HTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSC--HHHHHHHHHHHHHTSCCCHH
T ss_pred HcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhccC--hHHHHHHHHHHHHHcCCCHH
Confidence 8888888888888887642 233333431 112211222111100000 00012233445 58999999
Q ss_pred HHHHHHHHc-------CCCHHHHHHHHhcCCCC
Q 017845 238 RVIEACRAG-------GDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 238 ~A~~AL~~~-------~nnve~A~e~Ll~~~~~ 263 (365)
++..++..| ..++..-++||.+..+-
T Consensus 165 ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl 197 (335)
T 4fp9_B 165 QVTKILHSCPSVLREDLGQLEYKFQYAYFRMGI 197 (335)
T ss_dssp HHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCC
Confidence 999998865 34678888998877664
No 94
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=93.47 E-value=0.055 Score=51.92 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=35.2
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845 91 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEKAK 131 (365)
Q Consensus 91 ~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~~d 131 (365)
...|..|-++ |.+..+||+||-.|+||++.|++||-+....
T Consensus 5 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~k 46 (291)
T 1xb2_B 5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQK 46 (291)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3557778887 9999999999999999999999999875433
No 95
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=93.10 E-value=0.017 Score=53.14 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 223 ~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
.+.|.+|++|||++..++.||..++-|+++|++.||+.
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 57899999999999999999999999999999999863
No 96
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=92.73 E-value=0.02 Score=52.58 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
+++|..|++|||++..+++||..++.|++.|++.|+..
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 68999999999999999999999999999999998754
No 97
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.87 E-value=0.25 Score=37.29 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCC---CHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 91 DESLSLVMSMGF---KEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 91 ~~~L~~LmeMGF---~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
+++|.+|.+| | +..-.+..|++|+||+++|++-|.+-..
T Consensus 19 ~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 19 NQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 6789999999 6 5677888999999999999999988654
No 98
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=91.39 E-value=0.28 Score=33.46 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=33.0
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845 224 AKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPG 262 (365)
Q Consensus 224 ~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~ 262 (365)
+.|.+.++. |.+...|+.-|..++.|++.|++-.|.+++
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~~ 46 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGG 46 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 456666665 899999999999999999999998887653
No 99
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=91.20 E-value=0.12 Score=49.57 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=31.9
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845 163 IEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL 197 (365)
Q Consensus 163 ~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L 197 (365)
...|..|.++ |...-.|++||..++||+++|++||
T Consensus 5 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~L 40 (291)
T 1xb2_B 5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWL 40 (291)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568888888 8888999999999999999999998
No 100
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=90.75 E-value=0.22 Score=45.20 Aligned_cols=34 Identities=35% Similarity=0.271 Sum_probs=30.7
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845 164 EKIKELVSI-GFEKELVAEALRRNENDSQKALDDL 197 (365)
Q Consensus 164 ~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L 197 (365)
..|..|.++ |...-.|++||..++||++.|++||
T Consensus 5 ~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~L 39 (196)
T 1aip_C 5 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL 39 (196)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 457788887 8888999999999999999999998
No 101
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=90.43 E-value=0.28 Score=39.97 Aligned_cols=39 Identities=36% Similarity=0.599 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHh-CCCCHHHHHHHHHHhCCCHHHHHHHH
Q 017845 87 LQVPDESLSLVMS-MGFKEQDAKRALRICSQDVGSAIDFL 125 (365)
Q Consensus 87 l~vd~~~L~~Lme-MGF~~~~arrALra~~~dve~Av~~L 125 (365)
..++++.+..+|+ .|-++.+|++||+.|+||+=.|+-+|
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 5688999998876 69999999999999999988888775
No 102
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=88.73 E-value=0.29 Score=44.81 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=26.6
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCC
Q 017845 89 VPDESLSLVMSMGFKEQDAKRALRICSQD 117 (365)
Q Consensus 89 vd~~~L~~LmeMGF~~~~arrALra~~~d 117 (365)
.|.++|..|++|||++..++.||..++.|
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~~ 196 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGVK 196 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCCS
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 46889999999999999999999998876
No 103
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=88.49 E-value=0.55 Score=38.23 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845 160 AVDIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL 197 (365)
Q Consensus 160 ~vd~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L 197 (365)
.++++.|..+++- |-++..|++||+.++||+-.|+-.|
T Consensus 63 ~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3677888887765 9999999999999999999988765
No 104
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=88.29 E-value=0.33 Score=44.45 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=26.2
Q ss_pred ccHHHHHHHHhCCCCHHHHHHHHHHcCCC
Q 017845 221 AADAKIEQLVAMGFERPRVIEACRAGGDD 249 (365)
Q Consensus 221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nn 249 (365)
.+...|.+|+.|||+++.|+.||..++.|
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~~ 196 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGVK 196 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCCS
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 35789999999999999999999999884
No 105
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.30 E-value=0.97 Score=33.23 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845 223 DAKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPG 262 (365)
Q Consensus 223 ~~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~ 262 (365)
.+.|.+.+.+ |-++..|+.-|..++.|++.|++..|.+++
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 4567777776 999999999999999999999998887753
No 106
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=86.87 E-value=3.5 Score=35.19 Aligned_cols=104 Identities=13% Similarity=0.011 Sum_probs=70.1
Q ss_pred eehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHH
Q 017845 2 VWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQ 81 (365)
Q Consensus 2 vWcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~ 81 (365)
.+||+.++ ..+.|..-+.+|-+.+++.+|.+.. ...+.+..-|.+.+..|+.++|...+.+|-
T Consensus 50 ~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 112 (283)
T 3edt_B 50 ALVYRDQN---KYKEAAHLLNDALAIREKTLGKDHP--------------AVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112 (283)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTCH--------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcc---cHHHHHHHHHHHHHHHHHHcCCcch--------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35666554 4678888888888888777776543 344566667999999999999999999987
Q ss_pred hhhccC--CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 82 AKFFQL--QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 82 ~~~~~l--~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
..+.+. .-++.....+..+|. +....|+.+.|+.++..-..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~la~--------~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 113 EIREKVLGKFHPDVAKQLNNLAL--------LCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH--------HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHH
Confidence 765443 112444444443321 22346789999999766543
No 107
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=85.69 E-value=1.2 Score=32.83 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 017845 91 DESLSLVMSMGFKEQDAKRALRIC 114 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~ 114 (365)
+++++.|+.+||++.+|.+|+...
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999999999999875
No 108
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.97 E-value=1.9 Score=32.20 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=34.1
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845 224 AKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 224 ~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~ 263 (365)
+.|.+.+.+ |-+...|+.-|..++.|++.|++-.|.++..
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~~ 59 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETNI 59 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 567777766 9999999999999999999999998876543
No 109
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=84.37 E-value=5.4 Score=30.55 Aligned_cols=99 Identities=18% Similarity=0.049 Sum_probs=62.3
Q ss_pred ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845 3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
|+|+..+ ..+.|..-+.+|-+.+.+. | ......+.+..-|.+.+..|+.++|...+.++-.
T Consensus 17 ~~~~~~~---~~~~A~~~~~~al~~~~~~-~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 17 NTHYLLG---NFRDAVIAHEQRLLIAKEF-G---------------DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHHH-T---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhc---CHHHHHHHHHHHHHHHHHh-C---------------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566554 4667777777777666542 1 1122345666679999999999999999999977
Q ss_pred hhccCCCCHHHHHHHHhCCCCHHHHHHH-HHHhCCCHHHHHHHHHHhh
Q 017845 83 KFFQLQVPDESLSLVMSMGFKEQDAKRA-LRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 83 ~~~~l~vd~~~L~~LmeMGF~~~~arrA-Lra~~~dve~Av~~L~e~~ 129 (365)
..+...-.......+.. .| +....|+.+.|+.++..-.
T Consensus 78 ~~~~~~~~~~~~~~~~~---------l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 78 LARQLKDRAVEAQSCYS---------LGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHTTCHHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHH
Confidence 77655322222222222 22 2233678999999876554
No 110
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.19 E-value=1.9 Score=32.26 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=34.0
Q ss_pred HHHHHHHHhC-C-CCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845 223 DAKIEQLVAM-G-FERPRVIEACRAGGDDIHQIMLQLLGEPG 262 (365)
Q Consensus 223 ~~~I~~L~~M-G-F~~~~A~~AL~~~~nnve~A~e~Ll~~~~ 262 (365)
.+.|.+.+.+ | -+...|+.-|..++.|++.|++-.|.+..
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4567777776 8 78889999999999999999999887644
No 111
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=84.02 E-value=5.8 Score=34.48 Aligned_cols=103 Identities=13% Similarity=0.006 Sum_probs=68.1
Q ss_pred ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845 3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
+||+.+ .....|..-+.+|-+.+++.+|.+... ....+..-|.+.+..|+.++|...+.++-.
T Consensus 119 ~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 119 VLYGKR---GKYKEAEPLCKRALEIREKVLGKDHPD--------------VAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHHHTT---TCHHHHHHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHc---CcHHHHHHHHHHHHHHHHHhcCCCChH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455554 457788888888888888777755432 345556678889999999999999999877
Q ss_pred hhccCC--CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 83 KFFQLQ--VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 83 ~~~~l~--vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
.+.+.. -++.....+..+| -+....|+.+.|+.++..-..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLA--------SCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHH--------HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHHHH
Confidence 655431 1333333333322 122335789999999866553
No 112
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=82.81 E-value=7.4 Score=35.67 Aligned_cols=162 Identities=10% Similarity=0.073 Sum_probs=88.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh----C----CCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCCcCC
Q 017845 91 DESLSLVMSMGFKEQDAKRALRIC----S----QDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVD 162 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~----~----~dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vd 162 (365)
.+.|+.|.+||++....++....+ . .++..-+.||.+.--...++.+ .-.+.|.-++.... . -
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~------il~~~P~lL~~~~e--~-l 76 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGA------FLTKNHAIFSEDLE--N-L 76 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHH------HHHHCTTGGGSCHH--H-H
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHH------HHHhCChhhhCCHH--H-H
Confidence 467888999999999887765551 2 2466677888665322222210 00001111111100 0 1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCC----C---HHHHHhhc-CC-----CcchHHHHHhHHHHhhhhhccccHHHHHH-
Q 017845 163 IEKIKELVSIGFEKELVAEALRRNEN----D---SQKALDDL-TN-----PESNSAIQLYIESRKRKRCRQAADAKIEQ- 228 (365)
Q Consensus 163 ~~~l~~L~~MGF~~~~Ar~ALr~t~n----d---ve~Al~~L-~~-----p~~~~~L~~~~~~~~~~~~~~~~~~~I~~- 228 (365)
...++.|.++|++.....+.+..++. + +...+++| .. .++...+...+.-... ....-...+.-
T Consensus 77 ~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~--s~e~~~~~v~~l 154 (270)
T 3m66_A 77 KTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTG--SLEPVKENMKVY 154 (270)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTS--CSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceee--chHHHHHHHHHH
Confidence 23677889999999999999888864 2 33344444 11 1111111111100000 00011334554
Q ss_pred HHhCCCCHHHHHHHHHHc-------CCCHHHHHHHHhcCCCC
Q 017845 229 LVAMGFERPRVIEACRAG-------GDDIHQIMLQLLGEPGS 263 (365)
Q Consensus 229 L~~MGF~~~~A~~AL~~~-------~nnve~A~e~Ll~~~~~ 263 (365)
+..|||+.+.+..++..+ -.++..-++||.+..+-
T Consensus 155 ~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~ 196 (270)
T 3m66_A 155 RLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSI 196 (270)
T ss_dssp HHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCC
T ss_pred HHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCC
Confidence 479999999999988876 34578888999776554
No 113
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=82.50 E-value=4.6 Score=31.09 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=35.1
Q ss_pred cHHHHHHHHhC-CCCHH-HHHHHHHHcCCCHHHHHHHHhcCCCCCCc
Q 017845 222 ADAKIEQLVAM-GFERP-RVIEACRAGGDDIHQIMLQLLGEPGSNPT 266 (365)
Q Consensus 222 ~~~~I~~L~~M-GF~~~-~A~~AL~~~~nnve~A~e~Ll~~~~~~~~ 266 (365)
.+..+++|.+. |..-. .-.+||++.+||+.+|+-+|.+.+...+.
T Consensus 24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~~P~ 70 (80)
T 1vdl_A 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKTPP 70 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCCCS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccccCCC
Confidence 44577888887 86554 55689999999999999999987666443
No 114
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=82.16 E-value=2.1 Score=32.61 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=31.5
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 92 ESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 92 ~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
..|+++.++ -++..-+++.|.++++|||.+++.|++..
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 455666665 67788899999999999999999999973
No 115
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=81.62 E-value=2.5 Score=32.23 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=33.5
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845 223 DAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGEP 261 (365)
Q Consensus 223 ~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~~~ 261 (365)
+..|.++.++ -+...-+.+.|..+++|+|++++.||++.
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 4567777777 68889999999999999999999999864
No 116
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=81.34 E-value=6 Score=34.39 Aligned_cols=103 Identities=13% Similarity=-0.006 Sum_probs=66.2
Q ss_pred ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845 3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
+||+.++ ....|..-+.+|-+.+.+.+|.+.. .....+..-|.+.+..|+.++|...+.++-.
T Consensus 77 ~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 77 LVYRDQN---KYKDAANLLNDALAIREKTLGKDHP--------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHHHHCTTCH--------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCCh--------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4555544 5677888888887777777765533 2344556668888999999999999999876
Q ss_pred hhccC--CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 83 KFFQL--QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 83 ~~~~l--~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
...+. .-++.....+..+|. +....|+.+.|+.++..-..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~la~--------~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 140 IREKVLGKDHPDVAKQLNNLAL--------LCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH--------HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHH
Confidence 65433 222333333333221 22336789999999765543
No 117
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=80.35 E-value=0.68 Score=33.53 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=29.8
Q ss_pred cHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 017845 222 ADAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLG 259 (365)
Q Consensus 222 ~~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~ 259 (365)
..+.+.+|.+| .++++..+..|++++||++.|++-||.
T Consensus 12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 56778999999 899999999999999999999998874
No 118
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=79.82 E-value=2.8 Score=28.32 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=31.7
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 91 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 91 ~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
+++|.+.++. |-++..|+.-|..+++|++.|+.-.++.
T Consensus 6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3567777665 8899999999999999999999977764
No 119
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=78.88 E-value=5.3 Score=38.71 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=57.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhcCCCHHHHH----hhc----CC-CcchHHHHHhHHHHhhhhhccccHHHHHHHHhCCC
Q 017845 164 EKIKELVSIGFEKELVAEALRRNENDSQKAL----DDL----TN-PESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGF 234 (365)
Q Consensus 164 ~~l~~L~~MGF~~~~Ar~ALr~t~ndve~Al----~~L----~~-p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L~~MGF 234 (365)
..|..|++|||+..+..++|..+++-...-+ ..| -+ .++...|...+.-...+ ..--...|.-|..+||
T Consensus 48 ~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s--~e~L~~~l~fL~~lGl 125 (335)
T 4fp9_B 48 RVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLP--IMQMRKRSSYLQKLGL 125 (335)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSC--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCC--HHHHHHHHHHHHHcCC
Confidence 4688899999999999999999988543322 222 12 23333344332211100 0012345778999999
Q ss_pred CHHHHHHHHHHc----CCCHH---HHHHHHhcC
Q 017845 235 ERPRVIEACRAG----GDDIH---QIMLQLLGE 260 (365)
Q Consensus 235 ~~~~A~~AL~~~----~nnve---~A~e~Ll~~ 260 (365)
+....+..+..+ ..+.+ .-+.+|...
T Consensus 126 ~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~~~ 158 (335)
T 4fp9_B 126 GEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEK 158 (335)
T ss_dssp TTTTHHHHHHHCGGGGTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCchhhccChHHHHHHHHHHHHH
Confidence 998888888765 34444 344566543
No 120
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=78.76 E-value=7.2 Score=33.12 Aligned_cols=103 Identities=12% Similarity=-0.080 Sum_probs=67.4
Q ss_pred ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845 3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
+||+.++ ..+.|..-+.+|-+.+++.+|.+.. .....+..-|.+.+..|+.++|...+.++-.
T Consensus 93 ~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 93 VLYGKRG---KYKEAEPLCKRALEIREKVLGKFHP--------------DVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCH--------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhc---cHHHHHHHHHHHHHHHHHHcCCCCh--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555554 5678888888888888877775432 2345666778999999999999999999877
Q ss_pred hhccCCC--CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 83 KFFQLQV--PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 83 ~~~~l~v--d~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
.+..... ++.....+..+|. +....|+.+.|+.++..-..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~--------~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 156 IYATRLGPDDPNVAKTKNNLAS--------CYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHH--------HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHH
Confidence 6543321 2333333333211 22235789999999866543
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=77.32 E-value=13 Score=30.29 Aligned_cols=101 Identities=13% Similarity=0.021 Sum_probs=58.4
Q ss_pred ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845 3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
|||+.++ ..+.|..-+.+|-+.++ .+|.+. ......+..-|.+.+..|+.++|...+.++-.
T Consensus 74 ~~~~~~g---~~~~A~~~~~~al~~~~-~~~~~~--------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 74 MVERMAG---NWDAARRCFLEERELLA-SLPEDP--------------LAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHH-HSCCCH--------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcC---CHHHHHHHHHHHHHHHH-HcCccH--------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444443 35566666666666554 344322 12344556678899999999999999998866
Q ss_pred hhccCCCCHHHHH-HHHhCCCCHHHHHHH-HHHhCCCHHHHHHHHHHhhhh
Q 017845 83 KFFQLQVPDESLS-LVMSMGFKEQDAKRA-LRICSQDVGSAIDFLVEEKAK 131 (365)
Q Consensus 83 ~~~~l~vd~~~L~-~LmeMGF~~~~arrA-Lra~~~dve~Av~~L~e~~~d 131 (365)
...... +...+. .+. .+| +....|+.+.|+.++.+-..-
T Consensus 136 ~~~~~~-~~~~~~~~~~---------~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 136 YAQQAD-DQVAIACAFR---------GLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHTT-CHHHHHHHHH---------HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcc-chHHHHHHHH---------HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 554432 121111 111 122 223367899999887665443
No 122
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.19 E-value=3.7 Score=30.59 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=31.0
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHh-hcCCCc
Q 017845 164 EKIKELVSI-GFEKELVAEALRRNENDSQKALD-DLTNPE 201 (365)
Q Consensus 164 ~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~-~L~~p~ 201 (365)
+.|.+.+.. |-++..|+.-|..+++|++.|++ ++.+|.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 456666666 88999999999999999999999 456654
No 123
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.15 E-value=3.5 Score=30.20 Aligned_cols=39 Identities=15% Similarity=0.357 Sum_probs=33.2
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 91 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 91 ~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
+++|.+.|.+ |-++..|+.-|..+++|++.|+.-.+++.
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 4567777775 88999999999999999999999887763
No 124
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=78.26 E-value=0.52 Score=39.68 Aligned_cols=45 Identities=27% Similarity=0.340 Sum_probs=36.1
Q ss_pred cHHHHHHHHhC-CCC-HHHHHHHHHHcCCCHHHHHHHHhcCCCCCCc
Q 017845 222 ADAKIEQLVAM-GFE-RPRVIEACRAGGDDIHQIMLQLLGEPGSNPT 266 (365)
Q Consensus 222 ~~~~I~~L~~M-GF~-~~~A~~AL~~~~nnve~A~e~Ll~~~~~~~~ 266 (365)
.+-.++||.+. |.. ...-.+||++++||+.+|+.+|.+.+...+.
T Consensus 18 ~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~~p~ 64 (129)
T 2lva_A 18 GQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPS 64 (129)
Confidence 34467888887 877 6677899999999999999999887665443
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=74.76 E-value=22 Score=28.76 Aligned_cols=101 Identities=13% Similarity=0.181 Sum_probs=60.7
Q ss_pred ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845 3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
|||+.++ ..+.|..-+.+|-+.++.. |. .....+.+..-|.+.+..|+.++|...+.+|-.
T Consensus 34 ~~~~~~g---~~~~A~~~~~~al~~~~~~-~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 34 YVYAFMD---RFDEARASFQALQQQAQKS-GD---------------HTAEHRALHQVGMVERMAGNWDAARRCFLEERE 94 (203)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHTT-CC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC---cHHHHHHHHHHHHHHHHHc-CC---------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555544 3556666666666555432 11 223445566678899999999999999999887
Q ss_pred hhccCCCCH-HHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 83 KFFQLQVPD-ESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 83 ~~~~l~vd~-~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
.+....-++ .....+..+|. +....|+.+.|..++..-..
T Consensus 95 ~~~~~~~~~~~~~~~~~~lg~--------~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 95 LLASLPEDPLAASANAYEVAT--------VALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHSCCCHHHHHHHHHHHHH--------HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCccHHHHHHHHHHHHH--------HHHHhCCHHHHHHHHHHHHH
Confidence 766554233 22223333321 22235788999988766543
No 126
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=74.21 E-value=13 Score=28.22 Aligned_cols=99 Identities=12% Similarity=-0.038 Sum_probs=58.2
Q ss_pred ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845 3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
|||+.++ ..+.|..-+.+|-+.+... | ......+.+..-|.+.+..|+.++|...+.++-.
T Consensus 57 ~~~~~~g---~~~~A~~~~~~a~~~~~~~-~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 57 NAYIFLG---EFETASEYYKKTLLLARQL-K---------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHHT-T---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcC---CHHHHHHHHHHHHHHHHHh-C---------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555544 3456666666655554432 1 1233455666779999999999999999999876
Q ss_pred hhccCCCCHHHHHHHHhCCCCHHHHHHHH-HHhCCCHHHHHHHHHHhh
Q 017845 83 KFFQLQVPDESLSLVMSMGFKEQDAKRAL-RICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 83 ~~~~l~vd~~~L~~LmeMGF~~~~arrAL-ra~~~dve~Av~~L~e~~ 129 (365)
...+..-.......+. ..|. ....|+.+.|+.++..-.
T Consensus 118 ~~~~~~~~~~~~~~~~---------~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 118 IAQELKDRIGEGRACW---------SLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHTTCHHHHHHHHH---------HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHccchHhHHHHHH---------HHHHHHHHccCHHHHHHHHHHHH
Confidence 6655432111111111 1221 222578888888876543
No 127
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=73.98 E-value=0.59 Score=36.01 Aligned_cols=17 Identities=35% Similarity=0.833 Sum_probs=14.4
Q ss_pred eehhhhhCCCCChHHHH
Q 017845 2 VWCYFMLRDISWLSEAG 18 (365)
Q Consensus 2 vWcy~~L~~~~~L~dA~ 18 (365)
.|||++|+-|.|-.|-+
T Consensus 34 cwcylrlqri~qsedee 50 (90)
T 1zza_A 34 CWCYLRLQRISQSEDEE 50 (90)
T ss_dssp HHTTTSSCSSCSSCCCT
T ss_pred HHHHHHHHHHhccccch
Confidence 59999999999877744
No 128
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=73.66 E-value=3.1 Score=30.56 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHh
Q 017845 163 IEKIKELVSIGFEKELVAEALRR 185 (365)
Q Consensus 163 ~~~l~~L~~MGF~~~~Ar~ALr~ 185 (365)
.+.++.|+.+||++..|.+|++.
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~ 40 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLD 40 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 129
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=73.02 E-value=12 Score=33.81 Aligned_cols=99 Identities=17% Similarity=0.037 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHH
Q 017845 14 LSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDES 93 (365)
Q Consensus 14 L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~ 93 (365)
.+.|...+..|.+.|.++.- ..+.. .......+.+..-|.+.+..|+.++|...+.++-...+...-+...
T Consensus 156 ~~~a~~~~~~A~~~~~~al~-------~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (406)
T 3sf4_A 156 PEEVRDALQAAVDFYEENLS-------LVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH-------HHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 45566667777777766521 11111 1234455667777999999999999999999997776664322222
Q ss_pred HHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 94 LSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 94 L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
...+..+| -+....|+.+.|+.++..-.
T Consensus 227 ~~~~~~la--------~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 227 RRAYSNLG--------NAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHHHH--------HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH--------HHHHHcCChHHHHHHHHHHH
Confidence 22222221 12233678999998876544
No 130
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.54 E-value=5.5 Score=29.66 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHHHHHHHhC-C-CCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 91 DESLSLVMSM-G-FKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 91 ~~~L~~LmeM-G-F~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
+++|.+.+.+ | =++..|+.-|..+++|++.|+.-.++..+
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3567888775 7 78889999999999999999999888743
No 131
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=70.70 E-value=0.67 Score=52.39 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=35.3
Q ss_pred CCHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 89 VPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 89 vd~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
|....|..|-++ |.+..+||+||-.++||++.|++||-+.-
T Consensus 4 ita~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRkkG 45 (1289)
T 3avx_A 4 ITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSG 45 (1289)
T ss_dssp SCCSCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHTTH
T ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345568888887 99999999999999999999999997543
No 132
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=70.35 E-value=74 Score=30.09 Aligned_cols=145 Identities=14% Similarity=0.089 Sum_probs=83.4
Q ss_pred HHHHhcCCChHHHHHHHhCC-----CchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh-hhccCCCC---HHHHHHH
Q 017845 27 GIERAHGKDSSRVRLLQAGR-----HPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA-KFFQLQVP---DESLSLV 97 (365)
Q Consensus 27 ~f~~~yG~~~~Rl~~lkg~~-----~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~-~~~~l~vd---~~~L~~L 97 (365)
.|.+++|-+..-+..|=..+ +....|.-|+..|+++ .+. .++....+.+.-. .+... .+ ...|.-|
T Consensus 56 ~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~l-G~s---~~~i~~il~~~P~iLl~s~-~~~~l~p~v~fL 130 (343)
T 3mva_O 56 MFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKI-VTS---DLEIVNILERSPESFFRSN-NNLNLENNIKFL 130 (343)
T ss_dssp HHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTT-SSC---HHHHHHHHHHCSHHHHSCC-CHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHc-CCC---HHHHHHHHHHCCHHHhCCC-hHhhHHHHHHHH
Confidence 67789999998887665432 3345688888888864 333 2444455544433 22211 11 2457789
Q ss_pred HhCCCCHHHHHHHHHHh----CCCHHH---HHHHHHHhhhh-----HH-HhhhhHHHHHHHHHHHhhcCCCCCCCcCCHH
Q 017845 98 MSMGFKEQDAKRALRIC----SQDVGS---AIDFLVEEKAK-----RV-KEREDNEQRRKEIMEQKRYGLTPLKKAVDIE 164 (365)
Q Consensus 98 meMGF~~~~arrALra~----~~dve~---Av~~L~e~~~d-----~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~vd~~ 164 (365)
.++|++..+..+.+..+ ..+++. .++|+.+-.-. +. .+ ...-.+.|.-++... ..+ ..
T Consensus 131 ~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g~~~p~~~I------~~il~~~P~iL~~s~--~~i-~~ 201 (343)
T 3mva_O 131 YSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFV------RKIIFKNPFILIQST--KRV-KA 201 (343)
T ss_dssp HHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTTCSCHHHHH------HHHHHHCGGGGGSCH--HHH-HH
T ss_pred HHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcCCCcHHHHH------HHHHHhCChHhcCCH--HHH-HH
Confidence 99999999999988765 345654 77887664211 11 11 111101111112110 011 24
Q ss_pred HHHHHHh-CCCCHHHHHHHHHh
Q 017845 165 KIKELVS-IGFEKELVAEALRR 185 (365)
Q Consensus 165 ~l~~L~~-MGF~~~~Ar~ALr~ 185 (365)
.+..|.+ +||+...+..++..
T Consensus 202 ~v~fL~~~~G~~~~~~~~~i~~ 223 (343)
T 3mva_O 202 NIEFLRSTFNLNSEELLVLICG 223 (343)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHhc
Confidence 6778884 99999887777654
No 133
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=69.88 E-value=4.9 Score=27.84 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=29.0
Q ss_pred HHHHHHHHhC-CCCH-HHHHHHHHHhCCCHHHHHH
Q 017845 91 DESLSLVMSM-GFKE-QDAKRALRICSQDVGSAID 123 (365)
Q Consensus 91 ~~~L~~LmeM-GF~~-~~arrALra~~~dve~Av~ 123 (365)
+++|++..++ |-+. .+|+.-|-+++.|++.|++
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 5788888888 8885 9999999999999999985
No 134
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=69.50 E-value=6.2 Score=36.34 Aligned_cols=100 Identities=13% Similarity=-0.025 Sum_probs=61.4
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCH
Q 017845 12 SWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPD 91 (365)
Q Consensus 12 ~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~ 91 (365)
....+|...+..|.+.|.++.- ....+ .........+..-|.+.+..|+.++|...+.++-...+......
T Consensus 190 ~~~~~a~~~~~~A~~~~~~al~----~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 190 KFGDDVKEALTRAVEFYQENLK----LMRDL-----GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH----HHHHH-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHH----HHHHc-----CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 3356677778888888877531 11111 12244556677789999999999999999999877665532111
Q ss_pred HHHHHHHhCCCCHHHHHHH-HHHhCCCHHHHHHHHHHhh
Q 017845 92 ESLSLVMSMGFKEQDAKRA-LRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 92 ~~L~~LmeMGF~~~~arrA-Lra~~~dve~Av~~L~e~~ 129 (365)
.....+. .+| +....|+.+.|+.++..-.
T Consensus 261 ~~~~~~~---------~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 261 AERRANS---------NLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHH---------HHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHH---------HHHHHHHHCcCHHHHHHHHHHHH
Confidence 1111121 222 2233678999999986554
No 135
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=69.42 E-value=8.1 Score=36.92 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=53.2
Q ss_pred CHHHHHHHHhCCCCHHHHHHH---HHHh-CCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCCcCCHHH
Q 017845 90 PDESLSLVMSMGFKEQDAKRA---LRIC-SQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEK 165 (365)
Q Consensus 90 d~~~L~~LmeMGF~~~~arrA---Lra~-~~dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vd~~~ 165 (365)
++..|+-|.++||+...+.++ +... -.+++..++||.++--...++.. .-.+-|.-+...+ ..+ ...
T Consensus 19 ~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~------iv~~~P~lL~~~~--~~l-~p~ 89 (343)
T 3mva_O 19 NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIAS------IISRYPRAITRTP--ENL-SKR 89 (343)
T ss_dssp -CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHH------HHHHCGGGGGCCH--HHH-HHH
T ss_pred cHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHH------HHHhCcHHHhCCH--HHH-HHH
Confidence 577899999999998888665 2111 24688888998876433222210 1001111111110 000 125
Q ss_pred HHHHHhCCCCHHHHHHHHHhcCC
Q 017845 166 IKELVSIGFEKELVAEALRRNEN 188 (365)
Q Consensus 166 l~~L~~MGF~~~~Ar~ALr~t~n 188 (365)
++-|.++|++..+..++|.+++.
T Consensus 90 l~fL~~lG~s~~~i~~il~~~P~ 112 (343)
T 3mva_O 90 WDLWRKIVTSDLEIVNILERSPE 112 (343)
T ss_dssp HHHHTTTSSCHHHHHHHHHHCSH
T ss_pred HHHHHHcCCCHHHHHHHHHHCCH
Confidence 67788999999999988887764
No 136
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=67.60 E-value=18 Score=31.27 Aligned_cols=71 Identities=23% Similarity=0.134 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 52 LHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 52 l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
...+.+..-|.+.+..|+.++|...+.++-...+...-.......+..+| -+....|+.+.|+.++..-..
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG--------NTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH--------HHHHHhcCHHHHHHHHHHHHH
Confidence 33455666788888999999999999988776655432222222222221 122336789999999766543
No 137
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=65.73 E-value=15 Score=31.67 Aligned_cols=69 Identities=13% Similarity=-0.019 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 53 HLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 53 ~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
....+..-|.+.+..|+.++|...+.++-...+...-.......+..+| -+....|+.+.|..++..-.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG--------NAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH--------HHHHHcCChHHHHHHHHHHH
Confidence 3556666788999999999999999998776655432222222222211 12223578999999876543
No 138
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=65.71 E-value=7.8 Score=26.80 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=30.0
Q ss_pred cHHHHHHHHhC-CCCH-HHHHHHHHHcCCCHHHHHHH
Q 017845 222 ADAKIEQLVAM-GFER-PRVIEACRAGGDDIHQIMLQ 256 (365)
Q Consensus 222 ~~~~I~~L~~M-GF~~-~~A~~AL~~~~nnve~A~e~ 256 (365)
..+.|.+.+++ |-+. ..|+.=|.+++.|++.|+.-
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 35678888888 9886 99999999999999999863
No 139
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=65.26 E-value=25 Score=31.68 Aligned_cols=71 Identities=23% Similarity=0.134 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 52 LHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 52 l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
.....+..-|.+.+..|+.++|...+.++-...+...-.......+..+| -+....|+.+.|+.++..-..
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG--------NTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH--------HHHHHhCcHHHHHHHHHHHHH
Confidence 33556667799999999999999999998776665532222222232221 122336789999999766543
No 140
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=64.73 E-value=22 Score=32.48 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 53 HLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 53 ~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
..+.+..-|.+.+..|+.++|...+.++-...+...-.......+..+| -+....|+.+.|+.++..-..
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG--------NTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHHHH
Confidence 3456666788999999999999999998777665432222222222211 123346789999999866543
No 141
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=63.09 E-value=16 Score=25.80 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=31.3
Q ss_pred cHHHHHH--HHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845 222 ADAKIEQ--LVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPG 262 (365)
Q Consensus 222 ~~~~I~~--L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~ 262 (365)
.++.|.+ -+=-|=+++..+.-|+.|+=|++.|++-|++..+
T Consensus 9 Pe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T 2qho_B 9 PEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp CHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC---
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcccc
Confidence 4445544 3444999999999999999999999999998644
No 142
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=62.03 E-value=25 Score=32.35 Aligned_cols=102 Identities=14% Similarity=0.047 Sum_probs=64.3
Q ss_pred ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845 3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
|||+.++ ..+.|..-+.+|-+.+.+. |.. .....+.+..-|.+.+..|+.++|...+.+|-.
T Consensus 151 ~~~~~~~---~~~~A~~~~~~al~~~~~~-~~~--------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (383)
T 3ulq_A 151 ESYYYMK---QTYFSMDYARQAYEIYKEH-EAY--------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS 212 (383)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHTC-STT--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcC---CHHHHHHHHHHHHHHHHhC-ccc--------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5666644 4566777777776666553 211 122345666778999999999999999999987
Q ss_pred hhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 83 KFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 83 ~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
..++..-+......+..+|. +....|+.+.|+.++..-..
T Consensus 213 ~~~~~~~~~~~~~~~~~lg~--------~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 213 MAEAEKQPQLMGRTLYNIGL--------CKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--------HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHH--------HHHHCCCHHHHHHHHHHHHH
Confidence 77665322222223333332 23346789999999766543
No 143
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=62.01 E-value=24 Score=32.57 Aligned_cols=102 Identities=11% Similarity=-0.004 Sum_probs=63.0
Q ss_pred ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845 3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
+||+.++ ..+.|..-+.+|-+.|.+..+-. .-....+..-|.+.+..|+.++|.+.+.+|-.
T Consensus 149 ~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 210 (378)
T 3q15_A 149 EAYYHMK---QTHVSMYHILQALDIYQNHPLYS---------------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALE 210 (378)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHTSTTCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcC---CcHHHHHHHHHHHHHHHhCCCch---------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555544 45666666666666665533211 12344556678999999999999999999877
Q ss_pred hhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 83 KFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 83 ~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
...+..-+......+..+|. +....|+.+.|+.++..-..
T Consensus 211 ~~~~~~~~~~~~~~~~~lg~--------~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 211 LAMDIQNDRFIAISLLNIAN--------SYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--------HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--------HHHHCCCHHHHHHHHHHHHH
Confidence 66555322222233444332 22335789999999866654
No 144
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=58.42 E-value=41 Score=27.92 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhh
Q 017845 48 PELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 84 (365)
Q Consensus 48 ~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~ 84 (365)
+........+..-|.+.+..|+.++|...+.++-...
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 109 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 3444557788888999999999999999999887643
No 145
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=58.41 E-value=35 Score=31.30 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=45.1
Q ss_pred HHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 56 MELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 56 L~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
.+.+.|.+.+..|+.++|...+.+|-..+....-+......+..+|. +....|+.+.|+.|+..-.
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~--------~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSE--------SYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHH--------HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH--------HHHHcCCHHHHHHHHHHHH
Confidence 56679999999999999999999998877665433333333433331 2223567888888765544
No 146
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=55.29 E-value=49 Score=28.06 Aligned_cols=52 Identities=21% Similarity=0.043 Sum_probs=35.1
Q ss_pred HHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC----CHHHHHHHHHHh
Q 017845 60 EGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQ----DVGSAIDFLVEE 128 (365)
Q Consensus 60 qgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~----dve~Av~~L~e~ 128 (365)
-|.+.+..|+.++|...|.+|-. .|++.....+|.....+ |.+.|+.|+..-
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~-----------------~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAA-----------------QGDGDALALLAQLKIRNPQQADYPQARQLAEKA 79 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH-----------------cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 46666668889999888887732 35555555555554445 788899887544
No 147
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=53.11 E-value=13 Score=33.40 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 017845 91 DESLSLVMSMGFKEQDAKRALRIC 114 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~ 114 (365)
+++++.|+.+||++.+|++|+...
T Consensus 161 ~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 579999999999999999999986
No 148
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=52.61 E-value=1.7 Score=49.24 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=31.3
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhcC
Q 017845 163 IEKIKELVSI-GFEKELVAEALRRNENDSQKALDDLT 198 (365)
Q Consensus 163 ~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L~ 198 (365)
...|..|.++ |...-.||+||..++||+++|++||-
T Consensus 6 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR 42 (1289)
T 3avx_A 6 ASLVKELRERTGAGMMDCKKALTEANGDIELAIENMR 42 (1289)
T ss_dssp CSCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3457888888 77778999999999999999999983
No 149
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=51.83 E-value=8.6 Score=36.22 Aligned_cols=34 Identities=24% Similarity=0.063 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhcccCChhHHHHHhHHHHhhhccC
Q 017845 54 LRMELLEGVAAYHSGQFDKARNALTSAQAKFFQL 87 (365)
Q Consensus 54 ~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l 87 (365)
.++|-+-|.|.+..|+.++|.+.|.+|-..+++.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~ 84 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Confidence 4677778999999999999999999997765443
No 150
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=51.42 E-value=13 Score=27.95 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=33.9
Q ss_pred HHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHH----HHHHhCCCCHHHHHHHHH
Q 017845 55 RMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESL----SLVMSMGFKEQDAKRALR 112 (365)
Q Consensus 55 RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L----~~LmeMGF~~~~arrALr 112 (365)
..+..-|.+.+..|+.++|...+.++-...+.-..-+..+ ..++.+|= ..+|...+.
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~ 100 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGK-NTEAQQTLQ 100 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 3445568888888999999988888866665532212222 23455663 344544443
No 151
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=51.36 E-value=62 Score=29.28 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 53 HLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 53 ~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
....+..-|.+.+..|+.++|...+.++-...+...... .+..+..+ ++ +....|+.+.|..++..-
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l------a~--~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAML------IQ--CSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHH------HH--HHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHH------HH--HHHHcCCHHHHHHHHHHH
Confidence 345556678889999999999999999877665543211 22212111 11 223357888888887544
No 152
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=51.30 E-value=33 Score=25.95 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=33.7
Q ss_pred HHHHHhhcCCCcchHHHHHhHHHHhhhhhccccHHHHHHHHhCCCCHHHHHHHHHHcCC
Q 017845 190 SQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGD 248 (365)
Q Consensus 190 ve~Al~~L~~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L~~MGF~~~~A~~AL~~~~n 248 (365)
++.|+.+|.||.+. . .+-...+.=|.+=|.+.+....||+..+.
T Consensus 18 i~~Av~FLqdp~V~----~-----------sp~~~K~~FL~sKGLt~eEI~~Al~ra~~ 61 (70)
T 2w84_A 18 IATAVKFLQNSRVR----Q-----------SPLATRRAFLKKKGLTDEEIDMAFQQSGT 61 (70)
T ss_dssp HHHHHHHHCSTTGG----G-----------SCHHHHHHHHHHTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHhCChhhh----h-----------CCHHHHHHHHHHcCCCHHHHHHHHHHccC
Confidence 56778889998743 1 23455678899999999999999988765
No 153
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=50.61 E-value=6.4 Score=28.39 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHhcCCCHHHHHhh
Q 017845 163 IEKIKELVSI--GFEKELVAEALRRNENDSQKALDD 196 (365)
Q Consensus 163 ~~~l~~L~~M--GF~~~~Ar~ALr~t~ndve~Al~~ 196 (365)
.+.+++|.+| .++++-.+-.|+.++|+++.|++-
T Consensus 13 ~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~Ida 48 (54)
T 1p3q_Q 13 KDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDA 48 (54)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3679999999 899999999999999999999984
No 154
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=49.58 E-value=1.2e+02 Score=25.67 Aligned_cols=72 Identities=21% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhcCCC-HHHHHhhcCCCcchHHHHHhHHHHhhhhhccccHHHHHHHHhCCCCHHHHHHH
Q 017845 164 EKIKELVSIGFEKELVAEALRRNEND-SQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEA 242 (365)
Q Consensus 164 ~~l~~L~~MGF~~~~Ar~ALr~t~nd-ve~Al~~L~~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L~~MGF~~~~A~~A 242 (365)
...+.|..-|++...+..||.....+ .+.|..++. ...... .......-...+.-|+.=||+.+.+..+
T Consensus 86 ~I~~eL~~KGI~~~~I~~al~~~~~de~e~a~~l~~---------Kk~~~~-~~~~~~~k~K~~~~L~rrGF~~~~I~~~ 155 (162)
T 3dfg_A 86 HIRAELGTHGLDSDAVSAAMATFEGDWTENALDLIR---------RRFGED-GPVDLAQRRKAADLLARRGFDGNSIRLA 155 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTTCCSCHHHHHHHHHH---------HHHCTT-CCCSHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCcHhHHHHHHHHHH---------HhcCCC-CCCCHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 34567888899999999988776544 333333321 000000 0000011234567899999999999998
Q ss_pred HHH
Q 017845 243 CRA 245 (365)
Q Consensus 243 L~~ 245 (365)
|..
T Consensus 156 l~~ 158 (162)
T 3dfg_A 156 TRF 158 (162)
T ss_dssp TTC
T ss_pred Hhc
Confidence 754
No 155
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=49.52 E-value=9.3 Score=27.37 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Q 017845 234 FERPRVIEACRAGGDDIHQIMLQL 257 (365)
Q Consensus 234 F~~~~A~~AL~~~~nnve~A~e~L 257 (365)
|++.....||..|+||+..|+..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 678889999999999999999877
No 156
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=49.44 E-value=14 Score=33.88 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=13.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHhcC
Q 017845 165 KIKELVSIGFEKELVAEALRRNE 187 (365)
Q Consensus 165 ~l~~L~~MGF~~~~Ar~ALr~t~ 187 (365)
.+.-|.++||+..+..+.|..++
T Consensus 44 ~l~fL~~lG~~~~~i~~il~~~P 66 (270)
T 3m66_A 44 MLLFLKDVGIEDNQLGAFLTKNH 66 (270)
T ss_dssp HHHHHHHHTCCGGGHHHHHHHCT
T ss_pred HHHHHHHcCCCHHHHHHHHHhCC
Confidence 45556666666666666665554
No 157
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=49.06 E-value=32 Score=24.70 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=31.8
Q ss_pred HHHHHhhcCCCcchHHHHHhHHHHhhhhhccccHHHHHHHHhCCCCHHHHHHHHHHc
Q 017845 190 SQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAG 246 (365)
Q Consensus 190 ve~Al~~L~~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L~~MGF~~~~A~~AL~~~ 246 (365)
++.|+.+|.||.+. + .+-...+.=|.+=|.+.+....||+.+
T Consensus 13 i~~Av~FL~dp~V~----~-----------sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 13 IATAVKFLQNSRVR----Q-----------SPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHCTTGG----G-----------SCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHhCChhhh----c-----------CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 67788888888743 1 234456788999999999999999763
No 158
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=48.77 E-value=20 Score=32.53 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=41.9
Q ss_pred CChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCC-CCHHHHHHHHhCCCCHHHHHHHHH
Q 017845 34 KDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQ-VPDESLSLVMSMGFKEQDAKRALR 112 (365)
Q Consensus 34 ~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~-vd~~~L~~LmeMGF~~~~arrALr 112 (365)
.+.+||..++| .++-.+-.+.++|-..+..+ . ... ... ..-. +-+++++.|+.+||++.+|.+|+.
T Consensus 120 ~d~~~L~~vpG-IG~KtA~rIi~elk~kl~~~-~---~~~------~~~--~~~~~~~~ea~~AL~~LGy~~~ea~~av~ 186 (212)
T 2ztd_A 120 GNVAALTRVPG-IGKRGAERMVLELRDKVGVA-A---TGG------ALS--TNGHAVRSPVVEALVGLGFAAKQAEEATD 186 (212)
T ss_dssp TCHHHHHTSTT-CCHHHHHHHHHHHTTTCC-------------------------CCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHhhCCC-CCHHHHHHHHHHHHHhhccc-c---ccc------ccc--ccCcccHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46667766654 56777777778876655321 0 000 000 0001 226899999999999999999998
Q ss_pred Hh
Q 017845 113 IC 114 (365)
Q Consensus 113 a~ 114 (365)
..
T Consensus 187 ~~ 188 (212)
T 2ztd_A 187 TV 188 (212)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 159
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=54.23 E-value=3.7 Score=34.51 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=30.7
Q ss_pred HHHHHHhC-CCC-HHHHHHHHHhcCCCHHHHHhhcCC
Q 017845 165 KIKELVSI-GFE-KELVAEALRRNENDSQKALDDLTN 199 (365)
Q Consensus 165 ~l~~L~~M-GF~-~~~Ar~ALr~t~ndve~Al~~L~~ 199 (365)
.|++|.+. |.. ......||+.++||+..|+.+|++
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 68899988 876 677889999999999999999954
No 160
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=48.53 E-value=1.2e+02 Score=25.21 Aligned_cols=32 Identities=9% Similarity=-0.119 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhcccCChhHHHHHhHHHHhhhc
Q 017845 54 LRMELLEGVAAYHSGQFDKARNALTSAQAKFF 85 (365)
Q Consensus 54 ~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~ 85 (365)
...+..-|.+.+..|+.++|...+.++-...+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 34455566667777777777777766655443
No 161
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=48.43 E-value=28 Score=32.13 Aligned_cols=69 Identities=6% Similarity=0.046 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 53 HLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 53 ~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
-.+.+...|+..+..|+.++|...+.+|...+..+.-++.....+..||. +....|+.+.|+.++..-.
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~--------~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAE--------AYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHH--------HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH--------HHHHcCCcHHHHHHHHHHH
Confidence 34578889999999999999999999998887765433333333333321 2233567888888876544
No 162
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=47.15 E-value=27 Score=28.70 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=18.7
Q ss_pred HHHHHHhhhcccCChhHHHHHhHHHHhhhc
Q 017845 56 MELLEGVAAYHSGQFDKARNALTSAQAKFF 85 (365)
Q Consensus 56 L~lLqgvv~~h~g~~~~A~~~l~~A~~~~~ 85 (365)
.+..-|.+.+..|+.++|...+.++-...+
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 102 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence 344456666667777777777766655443
No 163
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=46.34 E-value=48 Score=23.44 Aligned_cols=45 Identities=24% Similarity=0.289 Sum_probs=35.0
Q ss_pred cCCCCHHHHHH--HHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845 86 QLQVPDESLSL--VMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 86 ~l~vd~~~L~~--LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~ 130 (365)
...|+++.+.+ -+=-|=+++-.+|-|+.||=||..|+|-|..+-+
T Consensus 5 ~~~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T 2qho_B 5 ASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp GGGSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC---
T ss_pred cccCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcccc
Confidence 34567777774 3445999999999999999999999999988754
No 164
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=45.43 E-value=20 Score=29.96 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHhCCC---HHHHHHHHHHhhhhHHH
Q 017845 100 MGFKEQDAKRALRICSQD---VGSAIDFLVEEKAKRVK 134 (365)
Q Consensus 100 MGF~~~~arrALra~~~d---ve~Av~~L~e~~~d~~~ 134 (365)
|+|++..-..-|..-++. |..+..|++.|+.....
T Consensus 1 m~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~~ 38 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPK 38 (142)
T ss_dssp -CCCHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHHH
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHhhhhHHH
Confidence 899999999999877764 99999999999876443
No 165
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=44.54 E-value=12 Score=28.87 Aligned_cols=24 Identities=4% Similarity=0.080 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Q 017845 234 FERPRVIEACRAGGDDIHQIMLQL 257 (365)
Q Consensus 234 F~~~~A~~AL~~~~nnve~A~e~L 257 (365)
|++.....||+.|+||+.+|+..|
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 567778999999999999999987
No 166
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=43.96 E-value=93 Score=27.42 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 50 LALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 50 ~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
.....+++.--|.+.+..|+.++|...+.+|-....+..........+..+|. +....+++.+.|+.++..-.
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~-------~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE-------CLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH-------HHHHTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------HHHHhCCcHHHHHHHHHHHH
Confidence 34666777788999999999999999999986655443221211222222221 22233335688888865543
No 167
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=43.22 E-value=39 Score=25.64 Aligned_cols=42 Identities=10% Similarity=-0.088 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHH
Q 017845 54 LRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSL 96 (365)
Q Consensus 54 ~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~ 96 (365)
+|-..+-|.++|.+|++.+|...+.++-...+. .++-..|..
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~~ 84 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTIIE 84 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHH
Confidence 344455699999999999999999988776666 555555543
No 168
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=41.24 E-value=1.7e+02 Score=26.25 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhcccCChhHHHHHhHHHHhhhccC
Q 017845 54 LRMELLEGVAAYHSGQFDKARNALTSAQAKFFQL 87 (365)
Q Consensus 54 ~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l 87 (365)
.......|.+.+..|+.++|...+.++-....+.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 126 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 3444557888899999999999998886665443
No 169
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=40.57 E-value=21 Score=33.45 Aligned_cols=61 Identities=18% Similarity=0.073 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhcc
Q 017845 13 WLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 86 (365)
Q Consensus 13 ~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~ 86 (365)
....|..-+++|.+.++..+|.+.. +..+ + .+-=-|.+.|+.|+.++|...+.++....+.
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~----------~~~~--~-~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAE----------IRSL--V-TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCT----------TTTH--H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccc----------hHHH--H-HHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3456666666666666555543211 1110 0 1111377889999999999999998665544
No 170
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=40.26 E-value=29 Score=31.10 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHc
Q 017845 223 DAKIEQLVAMGFERPRVIEACRAG 246 (365)
Q Consensus 223 ~~~I~~L~~MGF~~~~A~~AL~~~ 246 (365)
.+.+.-|+.|||++..|..|+...
T Consensus 161 ~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 578999999999999999999876
No 171
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=37.27 E-value=53 Score=32.92 Aligned_cols=87 Identities=14% Similarity=0.219 Sum_probs=60.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhcc-CC
Q 017845 10 DISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ-LQ 88 (365)
Q Consensus 10 ~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~-l~ 88 (365)
+.....+|..-..++-+.+++.||+++--+...- . =-|++.+++|+.++|..++.+|-.-+.. +-
T Consensus 363 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l----------~----nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 363 YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV----------M----RAGLTNWHAGHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH----------H----HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH----------H----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4457789999999999999999999987664331 1 1367788999999999999999665543 34
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHH
Q 017845 89 VPDESLSLVMSMGFKEQDAKRALRI 113 (365)
Q Consensus 89 vd~~~L~~LmeMGF~~~~arrALra 113 (365)
.|-..+..+..| ..+|+..++.
T Consensus 429 ~~Hp~~~~~~~~---l~~~~~e~~~ 450 (490)
T 3n71_A 429 PSHPITKDLEAM---RMQTEMELRM 450 (490)
T ss_dssp TTSHHHHHHHHH---HHHHHHHHHH
T ss_pred CCChHHHHHHHH---HHHHHHHHHH
Confidence 455555555532 3444444444
No 172
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=37.01 E-value=65 Score=30.13 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCC
Q 017845 53 HLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFK 103 (365)
Q Consensus 53 ~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~ 103 (365)
+.-..+-+|++.++.|+.++|+..|.++.+..+. +..-..|..+.|.
T Consensus 207 ~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~----~~~~~aL~~~~~~ 253 (282)
T 4f3v_A 207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE----PKVAAALKDPSYR 253 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC----HHHHHHHHCTTCC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----HHHHHHHhCCCCC
Confidence 4444556788888888888888888888775543 4455566666664
No 173
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=37.00 E-value=45 Score=30.12 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHc
Q 017845 223 DAKIEQLVAMGFERPRVIEACRAG 246 (365)
Q Consensus 223 ~~~I~~L~~MGF~~~~A~~AL~~~ 246 (365)
.+.+.-|+.|||++..|..|+...
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999999999998764
No 174
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=36.90 E-value=2.1e+02 Score=26.13 Aligned_cols=63 Identities=16% Similarity=0.052 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH-HHhCCCHHHHHHHHHHh
Q 017845 51 ALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL-RICSQDVGSAIDFLVEE 128 (365)
Q Consensus 51 ~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrAL-ra~~~dve~Av~~L~e~ 128 (365)
.+...+++.-|.+.+..|+.++|...+.+|-...+. ....+ ..+|. ....|+.+.|+.++..-
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~---------~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN------NEKGL---------SRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH---------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH---------HHHHHHHHHCCCHHHHHHHHHHH
Confidence 344677788899999999999999999998665432 12222 22232 22356788888886543
No 175
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=36.57 E-value=85 Score=26.25 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHH--HHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhc
Q 017845 20 RLRKAREGIERAHGKDSSRVRL--LQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 85 (365)
Q Consensus 20 rL~~~~~~f~~~yG~~~~Rl~~--lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~ 85 (365)
+...|..+|.+....+.....+ ..| ......+..++..--|.+.+..|+.++|...+.++-...+
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 19 QNGQAVSYFRQTIALNIDRTEMYYWTN-VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHH-SCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHhh-hcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 3455666666665544433222 122 2223344455666579999999999999999998866543
No 176
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=36.20 E-value=1.1e+02 Score=22.85 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=41.6
Q ss_pred HHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHh---CCCHHHHHHHHHHh
Q 017845 60 EGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRIC---SQDVGSAIDFLVEE 128 (365)
Q Consensus 60 qgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~---~~dve~Av~~L~e~ 128 (365)
=|.++|..|++..|..-|..|-..+..-. ..|++...+...|-.| -|+++.|+.++..-
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~----------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDEGE----------ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhccC----------CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 38899999999999999998866553221 1366666666554433 57899999886554
No 177
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.45 E-value=26 Score=26.94 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=29.4
Q ss_pred HHHHHHhC-CCCHHHHH-HHHHHhCCCHHHHHHHHHHhhhh
Q 017845 93 SLSLVMSM-GFKEQDAK-RALRICSQDVGSAIDFLVEEKAK 131 (365)
Q Consensus 93 ~L~~LmeM-GF~~~~ar-rALra~~~dve~Av~~L~e~~~d 131 (365)
.|.||-+. |..--+.. .||.+.+||+..||-+|.+.+..
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~ 67 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAK 67 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccccc
Confidence 46667665 66555444 49999999999999999988543
No 178
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=33.08 E-value=72 Score=24.82 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.8
Q ss_pred HHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 96 LVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 96 ~LmeMGF~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
..++=-.++..-+.|.-.++-|+++|+++|++.
T Consensus 43 ~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 43 EVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 334445788888888888899999999999876
No 179
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=33.08 E-value=98 Score=25.13 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=27.7
Q ss_pred HhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845 230 VAMGFERPRVIEACRAGGDDIHQIMLQLLGEP 261 (365)
Q Consensus 230 ~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~ 261 (365)
....-+-..+.+||..+.|+++.|..||++..
T Consensus 22 eef~~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 22 EKFNLDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHhhhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 34577888999999999999999999999754
No 180
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=32.99 E-value=26 Score=27.38 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=37.4
Q ss_pred HHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH-HHhCCCHHHHHHHHHHh
Q 017845 57 ELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL-RICSQDVGSAIDFLVEE 128 (365)
Q Consensus 57 ~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrAL-ra~~~dve~Av~~L~e~ 128 (365)
+.-+|.+.|.+|++++|...+.+|-...+. ....+.. +|. ....|+.+.|+.++..-
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~---------~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSN---------RAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH---------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHH---------HhhHHHhhccHHHHHHHHHHH
Confidence 445899999999999999999988654332 1222222 222 22357888888886443
No 181
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=31.47 E-value=1.9e+02 Score=23.93 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=16.3
Q ss_pred HHHHhhhcccCChhHHHHHhHHHHh
Q 017845 58 LLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 58 lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
..-|.+.+..|+.++|...+.++-.
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3445666667777777777776644
No 182
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=31.07 E-value=1.5e+02 Score=23.32 Aligned_cols=61 Identities=20% Similarity=0.007 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH-HHhCCCHHHHHHHHHHh
Q 017845 53 HLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL-RICSQDVGSAIDFLVEE 128 (365)
Q Consensus 53 ~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrAL-ra~~~dve~Av~~L~e~ 128 (365)
-...+...|.+.|..|++++|...|.++-...+. +.. .+. .+|. ....|+.+.|+.++..-
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~---~~~---------~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPI---YLS---------NRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHH---HHH---------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHH---HHH---------HHHHHHHHccCHHHHHHHHHHH
Confidence 4456677899999999999999999998665433 122 122 2222 22367899998886443
No 183
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=30.68 E-value=1.6e+02 Score=26.17 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHH-HHHhCCCHHHHHHHHHHhh
Q 017845 58 LLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA-LRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 58 lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrA-Lra~~~dve~Av~~L~e~~ 129 (365)
.--|.+.+..|+.++|...+.++-...++..........++. ++ +....|+.+.|+.++..-.
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA---------QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH---------HHHHHHHcCCHHHHHHHHHHHh
Confidence 334667777888888888888776655443211111111111 12 2223477888888765544
No 184
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=30.38 E-value=2.1e+02 Score=24.41 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=15.8
Q ss_pred HHHHHhhhcccCChhHHHHHhHHHHhhh
Q 017845 57 ELLEGVAAYHSGQFDKARNALTSAQAKF 84 (365)
Q Consensus 57 ~lLqgvv~~h~g~~~~A~~~l~~A~~~~ 84 (365)
+..-|.+.+..|+.++|...+.++-...
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 3344555556666666666666654444
No 185
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=30.29 E-value=28 Score=27.96 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=23.8
Q ss_pred HHHHHHhhhcccCChhHHHHHhHHHHhhh
Q 017845 56 MELLEGVAAYHSGQFDKARNALTSAQAKF 84 (365)
Q Consensus 56 L~lLqgvv~~h~g~~~~A~~~l~~A~~~~ 84 (365)
+|+--|.+.+.+|++++|...|.+|-...
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~ 35 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD 35 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34556999999999999999999986544
No 186
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=30.17 E-value=1.7e+02 Score=28.52 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhcc-CCCC
Q 017845 12 SWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ-LQVP 90 (365)
Q Consensus 12 ~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~-l~vd 90 (365)
....+|..-..++-+.+++.||+++--+... +.. -|.+.+++|+.++|..++.+|-+-+.. +-.|
T Consensus 343 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~----------l~n----La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 343 GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ----------VMK----VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH----------HHH----HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ccHHHHHHHHHHHHHhHHHHcCCCChHHHHH----------HHH----HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567888888888899999999888655321 222 366788899999999999999665544 3445
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH
Q 017845 91 DESLSLVMSMGFKEQDAKRALR 112 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALr 112 (365)
-..+..++. ...+|+.-|+
T Consensus 409 Hp~~~~~~~---~l~~~~~e~~ 427 (429)
T 3qwp_A 409 HSLIEDLIL---LLEECDANIR 427 (429)
T ss_dssp SHHHHHHHH---HHHHHHHHHH
T ss_pred ChHHHHHHH---HHHHHHHHHh
Confidence 555555543 2344544443
No 187
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=29.56 E-value=17 Score=27.91 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Q 017845 234 FERPRVIEACRAGGDDIHQIMLQL 257 (365)
Q Consensus 234 F~~~~A~~AL~~~~nnve~A~e~L 257 (365)
|++.....||+.|+||+..|+..|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 677888999999999999999876
No 188
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=29.43 E-value=28 Score=27.50 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Q 017845 234 FERPRVIEACRAGGDDIHQIMLQL 257 (365)
Q Consensus 234 F~~~~A~~AL~~~~nnve~A~e~L 257 (365)
|++.....||+.|+||+..|+..|
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 567888999999999999999987
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=29.10 E-value=1.7e+02 Score=21.38 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=23.7
Q ss_pred HHHHhhhcccCChhHHHHHhHHHHhhhccC
Q 017845 58 LLEGVAAYHSGQFDKARNALTSAQAKFFQL 87 (365)
Q Consensus 58 lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l 87 (365)
...|.+.|..|+.++|...|.++-...+.-
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 35 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNG 35 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Confidence 346888889999999999998887666553
No 190
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=28.40 E-value=2.6e+02 Score=27.26 Aligned_cols=83 Identities=8% Similarity=-0.051 Sum_probs=55.2
Q ss_pred HHHHHHHh-CCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCC--CCHHHHHHHHhCCCCHHHHHHHHHH
Q 017845 37 SRVRLLQA-GRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQ--VPDESLSLVMSMGFKEQDAKRALRI 113 (365)
Q Consensus 37 ~Rl~~lkg-~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~--vd~~~L~~LmeMGF~~~~arrALra 113 (365)
+|...|+. -.+++-...++.+--=|.+...+|+.++|..++.++-+-+.++- -.++....|..+| .+..
T Consensus 322 ~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa--------~~~~ 393 (433)
T 3qww_A 322 ELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG--------RLYM 393 (433)
T ss_dssp HHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH--------HHHH
Confidence 34444443 36666666667666678888999999999999999855554432 2455555666443 2344
Q ss_pred hCCCHHHHHHHHHH
Q 017845 114 CSQDVGSAIDFLVE 127 (365)
Q Consensus 114 ~~~dve~Av~~L~e 127 (365)
..|+.+.|..++..
T Consensus 394 ~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 394 GLENKAAGEKALKK 407 (433)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHH
Confidence 57789999988643
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=28.14 E-value=2.3e+02 Score=28.25 Aligned_cols=84 Identities=10% Similarity=0.012 Sum_probs=55.6
Q ss_pred HHHHHHHh-CCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccC-C-CCHHHHHHHHhCCCCHHHHHHHHHH
Q 017845 37 SRVRLLQA-GRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQL-Q-VPDESLSLVMSMGFKEQDAKRALRI 113 (365)
Q Consensus 37 ~Rl~~lkg-~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l-~-vd~~~L~~LmeMGF~~~~arrALra 113 (365)
+|...|+. -.+++-...++..---|.+...+|+.++|..++.++-+-+.++ - -.+.....|..+| .+..
T Consensus 333 ~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa--------~~~~ 404 (490)
T 3n71_A 333 RECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG--------LTNW 404 (490)
T ss_dssp HHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHH
Confidence 34444443 3666666677777777888899999999999999885554442 2 2455566666554 2344
Q ss_pred hCCCHHHHHHHHHHh
Q 017845 114 CSQDVGSAIDFLVEE 128 (365)
Q Consensus 114 ~~~dve~Av~~L~e~ 128 (365)
..|+.+.|..++..-
T Consensus 405 ~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 405 HAGHIEVGHGMICKA 419 (490)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 567899998876433
No 192
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=28.07 E-value=1.4e+02 Score=23.53 Aligned_cols=32 Identities=22% Similarity=-0.055 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhcccCChhHHHHHhHHHHhhhc
Q 017845 54 LRMELLEGVAAYHSGQFDKARNALTSAQAKFF 85 (365)
Q Consensus 54 ~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~ 85 (365)
..++..-|.+.+..|+.++|...+.+|-...+
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 76 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 34566678999999999999999998866543
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=28.02 E-value=1.5e+02 Score=21.85 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHH-HhCCCHHHHHHHHHHhh
Q 017845 52 LHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALR-ICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 52 l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALr-a~~~dve~Av~~L~e~~ 129 (365)
-....+..-|.+.+..|+.++|...|.+|-...+.. .... . .+|.- ...|+.+.|+.++..-.
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~---~---------~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALR---V---------FYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHH---H---------HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHH---H---------HHHHHHHHcCCHHHHHHHHHHHH
Confidence 345667778999999999999999999987665442 2222 1 12222 22568899998876554
No 194
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=27.98 E-value=1.2e+02 Score=25.44 Aligned_cols=47 Identities=9% Similarity=-0.181 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhC
Q 017845 51 ALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSM 100 (365)
Q Consensus 51 ~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeM 100 (365)
..+...+..-|.+.+..|+.++|...+.++-...+. |+.+.+.|-.+
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~l~~~ 264 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALDPT---NKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc---HHHHHHHhhhh
Confidence 444556666788999999999999999998776544 45555555444
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=27.72 E-value=4e+02 Score=25.43 Aligned_cols=63 Identities=13% Similarity=-0.006 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH-HHhCCCHHHHHHHHHHh
Q 017845 51 ALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL-RICSQDVGSAIDFLVEE 128 (365)
Q Consensus 51 ~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrAL-ra~~~dve~Av~~L~e~ 128 (365)
.+...+++-.|.+.+..|++++|...+.+|-...+. ....+ -++|. +...|+.+.|+.++..-
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~---------~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA------NEKGL---------YRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHH---------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHH---------HHHHHHHHHccCHHHHHHHHHHH
Confidence 455778888899999999999999999998664432 12222 22332 22356788888886543
No 196
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=27.60 E-value=29 Score=24.60 Aligned_cols=23 Identities=9% Similarity=0.041 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Q 017845 234 FERPRVIEACRAGGDDIHQIMLQL 257 (365)
Q Consensus 234 F~~~~A~~AL~~~~nnve~A~e~L 257 (365)
|++.....||+.| ||+..|+..|
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh
Confidence 5677889999999 8999999877
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=27.38 E-value=1e+02 Score=21.05 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=38.6
Q ss_pred HHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHH-HHHhCCCHHHHHHHHHHhh
Q 017845 55 RMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA-LRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 55 RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrA-Lra~~~dve~Av~~L~e~~ 129 (365)
+.+...|.+.+..|+.++|...+.++-...+. +... +. .+| +....|+.+.|+.++..-.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~---~~---------~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEA---WY---------NLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH---HH---------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHH---HH---------HHHHHHHHHhhHHHHHHHHHHHH
Confidence 44556688899999999999999988664432 1221 22 122 2223678899988875543
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=26.89 E-value=1.1e+02 Score=28.78 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845 54 LRMELLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 54 ~RL~lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
..++..-|.+.+..|+.++|...+.+|-.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 44445555566666666666666655543
No 199
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=26.64 E-value=92 Score=28.58 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=18.8
Q ss_pred HHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845 56 MELLEGVAAYHSGQFDKARNALTSAQA 82 (365)
Q Consensus 56 L~lLqgvv~~h~g~~~~A~~~l~~A~~ 82 (365)
.+..-|.+.+..|+.++|...|.++-.
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344456677777888888888877654
No 200
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=26.50 E-value=1.4e+02 Score=25.78 Aligned_cols=99 Identities=10% Similarity=0.014 Sum_probs=0.0
Q ss_pred CeehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHH
Q 017845 1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSA 80 (365)
Q Consensus 1 ivWcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A 80 (365)
+.+||+.+++ ...|...|.++.-.+.. ....+..-|.+.+..|+.++|...+.++
T Consensus 160 ~~~~~~~~~~----------~~~A~~~~~~~~~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 160 RAECFIKEGE----------PRKAISDLKAASKLKSD---------------NTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHTTC----------HHHHHHHHHHHHTTCSC---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHCCC----------HHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred HhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHh-CCCHHHHHHHHHH
Q 017845 81 QAKFFQLQVPDESLSLVMSMGFKEQDAKRALRIC-SQDVGSAIDFLVE 127 (365)
Q Consensus 81 ~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~-~~dve~Av~~L~e 127 (365)
-...+.. ......+..++--......|.... .|+.+.|+.++..
T Consensus 215 ~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 259 (359)
T 3ieg_A 215 LKLDQDH---KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 259 (359)
T ss_dssp HHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhCccc---hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
No 201
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=26.49 E-value=85 Score=24.43 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 233 GFERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 233 GF~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
-.++...+.|..+++=|+++|++++|+.
T Consensus 48 sV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 48 AVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp TSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 4788889999999999999999999975
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=26.41 E-value=1.1e+02 Score=30.14 Aligned_cols=74 Identities=15% Similarity=-0.083 Sum_probs=53.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhcc-CC
Q 017845 10 DISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ-LQ 88 (365)
Q Consensus 10 ~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~-l~ 88 (365)
+.....+|..-..++-+.+++.||+++--+... +.. -|.+.+++|+.++|..++.+|-+-+.. +-
T Consensus 352 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~----------l~n----La~~~~~qg~~~eA~~~~~~Al~i~~~~lG 417 (433)
T 3qww_A 352 YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM----------WLK----LGRLYMGLENKAAGEKALKKAIAIMEVAHG 417 (433)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH----------HHH----HHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH----------HHH----HHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Confidence 345678899999999999999999998766432 222 377888999999999999998665533 33
Q ss_pred CCHHHHHHH
Q 017845 89 VPDESLSLV 97 (365)
Q Consensus 89 vd~~~L~~L 97 (365)
.|-..+..|
T Consensus 418 ~~Hp~~~~l 426 (433)
T 3qww_A 418 KDHPYISEI 426 (433)
T ss_dssp TTCHHHHHH
T ss_pred CCChHHHHH
Confidence 444444443
No 203
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=26.29 E-value=56 Score=25.87 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhcccCChhHHHHHhHHHHhhhc
Q 017845 53 HLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 85 (365)
Q Consensus 53 ~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~ 85 (365)
...-..-+|...|..|++++|...+.+|-..++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~ 42 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLD 42 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344556789999999999999999998866543
No 204
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.78 E-value=2e+02 Score=24.29 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=54.8
Q ss_pred hCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccC
Q 017845 8 LRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQL 87 (365)
Q Consensus 8 L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l 87 (365)
|+....|+|..---.-++..+.+.||..--+-...+-|...+. .+.++.-.. .++-.....-++.++...
T Consensus 58 l~~~g~ldD~rfA~~~v~~~~~~~~G~~~I~~eL~~KGI~~~~--------I~~al~~~~--~de~e~a~~l~~Kk~~~~ 127 (162)
T 3dfg_A 58 LAGEGWQDDVRFAASVVRNRASSGYGPLHIRAELGTHGLDSDA--------VSAAMATFE--GDWTENALDLIRRRFGED 127 (162)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCCHHH--------HHHHHTTCC--SCHHHHHHHHHHHHHCTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHccccHHHHHHHHHHcCCCHHH--------HHHHHHhCc--HhHHHHHHHHHHHhcCCC
Confidence 4556677777655555666666678887666666666666553 233333222 122222223334455432
Q ss_pred CCCH-----HHHHHHHhCCCCHHHHHHHHHH
Q 017845 88 QVPD-----ESLSLVMSMGFKEQDAKRALRI 113 (365)
Q Consensus 88 ~vd~-----~~L~~LmeMGF~~~~arrALra 113 (365)
..++ -.+.-|+.-||+...++.+|..
T Consensus 128 ~~~~~~~k~K~~~~L~rrGF~~~~I~~~l~~ 158 (162)
T 3dfg_A 128 GPVDLAQRRKAADLLARRGFDGNSIRLATRF 158 (162)
T ss_dssp CCCSHHHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHhc
Confidence 2222 2345788999999999998853
No 205
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=25.55 E-value=1.6e+02 Score=25.95 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHhC-CC-chhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHH
Q 017845 15 SEAGIRLRKAREGIERAHGKDSSRVRLLQAG-RH-PELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDE 92 (365)
Q Consensus 15 ~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~-~~-~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~ 92 (365)
.+|..-++.|++.++.+-|= -.+ .+++ .. .+.++ .++---|.+....|+.++|.+.+.+|-..+.++.-...
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~--~~~--~~~~~~~~~~~A~--~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 75 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGF--MKL--FSGSDSYKFEEAA--DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDE 75 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTH--HHH--HSCCSHHHHHHHH--HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHHHHhCcCCCc--chh--cCCCCCccHHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 46888889999988765221 011 1111 11 22221 22222366777889999999999998776655432222
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 93 SLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 93 ~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
....+..+| . +....|+.+.|+.++..-
T Consensus 76 ~a~~~~~lg-------~-~~~~~g~~~~A~~~~~~A 103 (292)
T 1qqe_A 76 AGNTYVEAY-------K-CFKSGGNSVNAVDSLENA 103 (292)
T ss_dssp HHHHHHHHH-------H-HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-------H-HHHHCCCHHHHHHHHHHH
Confidence 233333322 1 122346778888776443
No 206
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=24.80 E-value=1.6e+02 Score=22.51 Aligned_cols=44 Identities=14% Similarity=0.002 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHh
Q 017845 52 LHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMS 99 (365)
Q Consensus 52 l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~Lme 99 (365)
.+.+.+.-.|.+.+..|+.++|.+.+.+|-.. .+|++.+..|.+
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~----~~~~~~~~~l~~ 124 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE----FRDPELVKKVKE 124 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcCHHHHHHHHH
Confidence 33456666788999999999999999987553 346776666543
No 207
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=24.67 E-value=1.6e+02 Score=24.95 Aligned_cols=103 Identities=10% Similarity=0.013 Sum_probs=0.0
Q ss_pred ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcc--------cCChhHHH
Q 017845 3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYH--------SGQFDKAR 74 (365)
Q Consensus 3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h--------~g~~~~A~ 74 (365)
+||+.+++ ...|..-+.++-+.+ |.-..+...+..-|.+.|. .|+.++|.
T Consensus 60 ~~~~~~~~---~~~A~~~~~~~l~~~-------------------p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~ 117 (261)
T 3qky_A 60 RAYYQNKE---YLLAASEYERFIQIY-------------------QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAI 117 (261)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHC-------------------TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHH
T ss_pred HHHHHhCc---HHHHHHHHHHHHHHC-------------------CCCchhHHHHHHHHHHHHHhcccccccchhHHHHH
Q ss_pred HHhHHHHhhhccCCCCHHHHHHHHhC--CCCHHHHHHHHHHh-CCCHHHHHHHHHH
Q 017845 75 NALTSAQAKFFQLQVPDESLSLVMSM--GFKEQDAKRALRIC-SQDVGSAIDFLVE 127 (365)
Q Consensus 75 ~~l~~A~~~~~~l~vd~~~L~~LmeM--GF~~~~arrALra~-~~dve~Av~~L~e 127 (365)
..|.++-..++.-..-..++..+... .+....-.+|.... .|+.+.|+.++..
T Consensus 118 ~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 118 EAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=24.42 E-value=1.1e+02 Score=24.05 Aligned_cols=29 Identities=3% Similarity=-0.004 Sum_probs=16.6
Q ss_pred hCCCCHHHHHHHHHHh-----CCCHHHHHHHHHH
Q 017845 99 SMGFKEQDAKRALRIC-----SQDVGSAIDFLVE 127 (365)
Q Consensus 99 eMGF~~~~arrALra~-----~~dve~Av~~L~e 127 (365)
+.|++.....+|.... .+|.+.|+.|+..
T Consensus 89 ~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 89 GLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 3455555555554332 3577888888643
No 209
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=23.72 E-value=1.4e+02 Score=21.69 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=29.1
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 91 DESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 91 ~~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
+..+.++.+| -++....+.-|..| |+|+..++-|++++
T Consensus 18 ~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeGr 57 (58)
T 4g3o_A 18 NAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEGR 57 (58)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHccc
Confidence 3445566666 56778888899987 79999999998764
No 210
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=23.14 E-value=1.7e+02 Score=28.21 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhcccCCh-hHHHHHhHHHHhhhc
Q 017845 53 HLRMELLEGVAAYHSGQF-DKARNALTSAQAKFF 85 (365)
Q Consensus 53 ~~RL~lLqgvv~~h~g~~-~~A~~~l~~A~~~~~ 85 (365)
..+.+.+.|.+.+..|++ ++|...|.+|-...+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p 134 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP 134 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC
Confidence 356677889999999999 999999998866543
No 211
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=23.13 E-value=39 Score=23.92 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhcCCCHHHHHhhc
Q 017845 174 FEKELVAEALRRNENDSQKALDDL 197 (365)
Q Consensus 174 F~~~~Ar~ALr~t~ndve~Al~~L 197 (365)
|.+.....||..++||+.+|...|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 567889999999999999999877
No 212
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=22.95 E-value=18 Score=32.23 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 017845 91 DESLSLVMSMGFKEQDAKRALRIC 114 (365)
Q Consensus 91 ~~~L~~LmeMGF~~~~arrALra~ 114 (365)
+++++.|+.+||+..+|.+|+...
T Consensus 147 ~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 147 EEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 679999999999999999999865
No 213
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=22.71 E-value=2.1e+02 Score=20.29 Aligned_cols=63 Identities=13% Similarity=-0.048 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHH-HhCCCHHHHHHHHHHh
Q 017845 51 ALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALR-ICSQDVGSAIDFLVEE 128 (365)
Q Consensus 51 ~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALr-a~~~dve~Av~~L~e~ 128 (365)
.-....+...|.+.+..|+.++|...+.++-...+.. ... + ..+|.- ...|+.+.|+.++..-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~---~---------~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVY---F---------CNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHH---H---------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHH---H---------HHHHHHHHHhhchHHHHHHHHHH
Confidence 3445677788999999999999999999886654321 111 1 122222 2367888888886544
No 214
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=22.38 E-value=1.6e+02 Score=21.28 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=29.4
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845 224 AKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGE 260 (365)
Q Consensus 224 ~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~~ 260 (365)
..++++.+| -++....+.-|..| |+++..++-++..
T Consensus 19 ~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 19 AMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 456667777 68999999999999 6699999988764
No 215
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=22.23 E-value=2e+02 Score=19.97 Aligned_cols=60 Identities=13% Similarity=-0.072 Sum_probs=38.1
Q ss_pred HHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845 55 RMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128 (365)
Q Consensus 55 RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~ 128 (365)
..+...|.+.+..|+.++|...+.++-...+. +... +..+|. +....|+.+.|+.++..-
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~---~~~~a~--------~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVL---YSNRSA--------AYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH---HHHHHH--------HHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHH---HHHHHH--------HHHhhccHHHHHHHHHHH
Confidence 34566788999999999999999988665432 1221 222111 122256788888886544
No 216
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=22.18 E-value=2e+02 Score=19.86 Aligned_cols=61 Identities=15% Similarity=0.049 Sum_probs=37.9
Q ss_pred HHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH-HHhC-CCHHHHHHHHHHhh
Q 017845 56 MELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL-RICS-QDVGSAIDFLVEEK 129 (365)
Q Consensus 56 L~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrAL-ra~~-~dve~Av~~L~e~~ 129 (365)
.+..-|.+.+..|+.++|...+.++-...+. ..+.... ..+|. .... |+.+.|+.++..-.
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~------------~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVW------------AAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHH------------HHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHH------------HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3456688889999999999999888665433 1112221 12222 2235 77888888875543
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=21.90 E-value=2.3e+02 Score=20.45 Aligned_cols=61 Identities=8% Similarity=-0.099 Sum_probs=41.0
Q ss_pred HHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHH-HHHhCCCHHHHHHHHHHhhh
Q 017845 55 RMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA-LRICSQDVGSAIDFLVEEKA 130 (365)
Q Consensus 55 RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrA-Lra~~~dve~Av~~L~e~~~ 130 (365)
+.+..-|.+.+..|+.++|...|.++-...+.. ... + ..+| +....|+.+.|+.++..-..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a---~---------~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDY---VGT---Y---------YHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THH---H---------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHH---H---------HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455667899999999999999999987655432 111 1 2222 22336789999988766543
No 218
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.75 E-value=1.5e+02 Score=27.00 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 50 LALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 50 ~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
....+..++++|-+.+..|+.++|...+.++....+.+..++.....+..++ --+....++.+.|..+..+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMS-------GILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-------HHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHH
Confidence 4456778899999999999999999999999877776655544333322110 112233566777777766654
Q ss_pred h
Q 017845 130 A 130 (365)
Q Consensus 130 ~ 130 (365)
.
T Consensus 244 ~ 244 (434)
T 4b4t_Q 244 E 244 (434)
T ss_dssp H
T ss_pred H
Confidence 3
No 219
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.18 E-value=1.7e+02 Score=21.11 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=28.6
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 92 ESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 92 ~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
..+.++.+| -++....+.-|..++ +|+..++-|++++
T Consensus 15 ~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (58)
T 2ejs_A 15 AMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGR 53 (58)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcC
Confidence 445556666 457788888898877 8999999999876
No 220
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=21.13 E-value=67 Score=30.06 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=33.7
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845 223 DAKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEP 261 (365)
Q Consensus 223 ~~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~ 261 (365)
.+.|.+.+++ |-+...|+.-|..++.|++.|++-.+.++
T Consensus 16 ~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~ 55 (270)
T 3bq3_A 16 QEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKE 55 (270)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4467777777 99999999999999999999999888653
No 221
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=20.89 E-value=3.5e+02 Score=23.83 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=39.2
Q ss_pred HHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845 56 MELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 56 L~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~ 129 (365)
.+.--|.+....|+.++|...+.+|-..+.+..-.......+..+|. +... |+.+.|+.++..-.
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~--------~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK--------LMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--------HHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHc-CCHHHHHHHHHHHH
Confidence 33334677777899999999999987766544311222223333221 1222 78888888876554
No 222
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=20.68 E-value=4.4e+02 Score=23.23 Aligned_cols=132 Identities=12% Similarity=0.015 Sum_probs=67.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhCCC---HHHHHHHHHHhh--hhHHHhhhhHHHHHHHHHHHhhcCCCCCCCcCCHHHHH
Q 017845 93 SLSLVMSMGFKEQDAKRALRICSQD---VGSAIDFLVEEK--AKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIK 167 (365)
Q Consensus 93 ~L~~LmeMGF~~~~arrALra~~~d---ve~Av~~L~e~~--~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vd~~~l~ 167 (365)
+|..|--.-.++.+-+.-|+.-+-+ |+.++++|.+.. +|....+ .....+... -|.+ .-...+
T Consensus 67 Al~~Ls~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~-----~~v~~~~~~-~~~G------~~~I~~ 134 (221)
T 3d5l_A 67 MLDYLSYQMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAA-----SYVRTMINT-DLKG------PGIIRQ 134 (221)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH-----HHHHHHHHH-CCCC------HHHHHH
T ss_pred HHHHhccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHH-----HHHHHHHHh-cccc------HHHHHH
Confidence 4555555666777777666654322 677777777663 3433331 111100000 0111 123445
Q ss_pred HHHhCCCCHHHHHHHHHhcCCC--HHHHHhhcCCCcchHHHHHhHHHHhhhhhccccHHHHHHHHhCCCCHHHHHHHHHH
Q 017845 168 ELVSIGFEKELVAEALRRNEND--SQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRA 245 (365)
Q Consensus 168 ~L~~MGF~~~~Ar~ALr~t~nd--ve~Al~~L~~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L~~MGF~~~~A~~AL~~ 245 (365)
.|..-|++...+..||.....+ .+.|..++ ...............-...+.-|..=||+.+.+..++..
T Consensus 135 eL~~KGI~~~~I~~al~~~~~~~e~e~a~~l~---------~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~ 205 (221)
T 3d5l_A 135 HLRQKGIGESDIDDALTQFTPEVQAELAKKLA---------LKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKDE 205 (221)
T ss_dssp HHHHTTCCHHHHHHHGGGCCHHHHHHHHHHHH---------HHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHcCCCHHHHHHHHHhCCHHHHHHHHHHHH---------HHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 6888899888888888764221 22232221 000000000000011245567899999999999998753
No 223
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=20.68 E-value=69 Score=25.58 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH----hCC---CHHHHHHHHHHh
Q 017845 92 ESLSLVMSMGFKEQDAKRALRI----CSQ---DVGSAIDFLVEE 128 (365)
Q Consensus 92 ~~L~~LmeMGF~~~~arrALra----~~~---dve~Av~~L~e~ 128 (365)
..|...++|||.....+.++.. ++. .++.-+.=|+..
T Consensus 29 ~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 29 PMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 3567889999999999988764 333 255555554444
No 224
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=20.43 E-value=3.5e+02 Score=21.96 Aligned_cols=61 Identities=16% Similarity=0.061 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH-HHhCCCHHHHHHHHHHh
Q 017845 53 HLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL-RICSQDVGSAIDFLVEE 128 (365)
Q Consensus 53 ~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrAL-ra~~~dve~Av~~L~e~ 128 (365)
....+...|.+.+..|+.++|...+.++-...+. +... +. .+|. ....|+.+.|+.++..-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~---~~---------~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARG---YS---------NRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH---HH---------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---cHHH---HH---------HHHHHHHHhCCHHHHHHHHHHH
Confidence 3456677899999999999999999988665433 1211 11 2222 22367899999887554
No 225
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=20.11 E-value=2.5e+02 Score=20.28 Aligned_cols=60 Identities=15% Similarity=-0.080 Sum_probs=39.2
Q ss_pred HHHHHHHhhhcccCChhHHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH-HHhCCCHHHHHHHHHHhh
Q 017845 55 RMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL-RICSQDVGSAIDFLVEEK 129 (365)
Q Consensus 55 RL~lLqgvv~~h~g~~~~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrAL-ra~~~dve~Av~~L~e~~ 129 (365)
+.+..-|.+.+..|+.++|...|.++-...+.. ... + ..+|. ....|+.+.|+.++..-.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~---~---------~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVA---W---------KWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHH---H---------HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---HHH---H---------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455567889999999999999999886654321 111 1 12222 223578888988876554
Done!