Your job contains 1 sequence.
>017846
MAVAENAGAKIDSSNQNLDDTVVSSDSNDVQNSNDHSKERSGNGNANIQIQNGQTKPGAG
AGGGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNP
AFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRT
VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGT
MLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVC
GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKTPVRPRAP
RPPLH
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017846
(365 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2082961 - symbol:CID10 "CTC-interacting domain... 1010 6.9e-102 1
TAIR|locus:2139242 - symbol:CID12 "CTC-interacting domain... 991 7.1e-100 1
TAIR|locus:2035629 - symbol:CID11 "CTC-interacting domain... 971 9.4e-98 1
TAIR|locus:2091657 - symbol:CID9 "CTC-interacting domain ... 893 1.7e-89 1
TAIR|locus:2024842 - symbol:CID8 "CTC-interacting domain ... 875 1.4e-87 1
TAIR|locus:2184022 - symbol:CID13 "CTC-interacting domain... 753 1.2e-79 2
UNIPROTKB|F1NA16 - symbol:Gga.54187 "Uncharacterized prot... 147 3.3e-10 2
UNIPROTKB|J9P0H2 - symbol:SREK1 "Uncharacterized protein"... 153 3.7e-10 2
TAIR|locus:2100696 - symbol:PHIP1 "phragmoplastin interac... 159 1.1e-08 1
RGD|621696 - symbol:Srek1 "splicing regulatory glutamine/... 153 4.0e-08 1
UNIPROTKB|Q9JKL7 - symbol:Srek1 "Splicing regulatory glut... 153 4.0e-08 1
MGI|MGI:2145245 - symbol:Srek1 "splicing regulatory gluta... 153 4.0e-08 1
UNIPROTKB|Q8WXA9 - symbol:SREK1 "Splicing regulatory glut... 153 4.2e-08 1
UNIPROTKB|E2R749 - symbol:SREK1 "Uncharacterized protein"... 153 4.3e-08 1
ZFIN|ZDB-GENE-040801-132 - symbol:srek1 "splicing regulat... 153 4.3e-08 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 152 7.3e-08 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 150 8.1e-08 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 135 9.3e-08 2
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 147 1.4e-07 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 142 2.7e-07 1
POMBASE|SPBC1861.04c - symbol:SPBC1861.04c "RNA-binding p... 147 5.3e-07 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 140 8.6e-07 1
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 137 2.9e-06 2
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 119 3.3e-06 1
TAIR|locus:2086884 - symbol:NUC-L2 "nucleolin like 2" spe... 137 3.8e-06 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 133 4.8e-06 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 135 7.8e-06 1
DICTYBASE|DDB_G0283687 - symbol:DDB_G0283687 "RNA-binding... 133 1.3e-05 1
UNIPROTKB|F1MY46 - symbol:RBM23 "Uncharacterized protein"... 117 1.5e-05 2
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 130 1.6e-05 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 121 2.0e-05 1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 130 2.1e-05 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 131 2.3e-05 1
DICTYBASE|DDB_G0275459 - symbol:DDB_G0275459 "RNA-binding... 125 2.3e-05 1
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 130 2.3e-05 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 118 3.4e-05 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 114 3.8e-05 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 128 4.1e-05 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 126 5.5e-05 1
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 118 6.5e-05 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 114 6.6e-05 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 124 8.1e-05 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 100 9.9e-05 1
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 122 0.00011 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 123 0.00011 1
WB|WBGene00004704 - symbol:rsp-7 species:6239 "Caenorhabd... 84 0.00013 2
GENEDB_PFALCIPARUM|PFF0300w - symbol:PFF0300w "RNA-bindin... 123 0.00013 2
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 122 0.00014 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 115 0.00014 1
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 122 0.00014 1
DICTYBASE|DDB_G0293252 - symbol:DDB_G0293252 "putative RN... 123 0.00016 1
WB|WBGene00020354 - symbol:T08B6.5 species:6239 "Caenorha... 111 0.00016 1
TAIR|locus:2831834 - symbol:AT5G03580 species:3702 "Arabi... 98 0.00016 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 114 0.00018 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 121 0.00019 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 97 0.00021 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 113 0.00022 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 118 0.00023 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 118 0.00023 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 118 0.00023 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 121 0.00024 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 116 0.00025 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 120 0.00026 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 115 0.00029 1
SGD|S000005846 - symbol:HSH49 "U2-snRNP associated splici... 112 0.00029 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 116 0.00032 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 114 0.00035 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 117 0.00036 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 115 0.00040 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 111 0.00041 1
TAIR|locus:2028451 - symbol:NUC-L1 "nucleolin like 1" spe... 118 0.00042 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 114 0.00042 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 114 0.00044 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 114 0.00044 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 114 0.00044 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 114 0.00044 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 94 0.00044 2
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 115 0.00047 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 115 0.00048 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 115 0.00049 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 117 0.00049 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 117 0.00050 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 117 0.00050 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 117 0.00050 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 117 0.00050 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 117 0.00050 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 117 0.00050 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 117 0.00050 1
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 120 0.00051 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 117 0.00051 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 118 0.00052 1
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 113 0.00052 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 108 0.00055 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 93 0.00057 1
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi... 117 0.00059 2
UNIPROTKB|E2R8F6 - symbol:CELF1 "Uncharacterized protein"... 116 0.00062 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 112 0.00062 1
UNIPROTKB|G5EA30 - symbol:CELF1 "CUG triplet repeat, RNA ... 116 0.00062 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 113 0.00063 1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 113 0.00064 1
WARNING: Descriptions of 42 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2082961 [details] [associations]
symbol:CID10 "CTC-interacting domain 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 EMBL:AC012329
EMBL:AL132956 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818
Pfam:PF07145 EMBL:AK317338 IPI:IPI00545615 PIR:T45844
RefSeq:NP_001030833.1 RefSeq:NP_190508.1 UniGene:At.738
ProteinModelPortal:Q9SG10 SMR:Q9SG10 PRIDE:Q9SG10
EnsemblPlants:AT3G49390.1 EnsemblPlants:AT3G49390.2 GeneID:824101
KEGG:ath:AT3G49390 TAIR:At3g49390 InParanoid:Q9SG10 OMA:ETDDRIN
PhylomeDB:Q9SG10 ProtClustDB:CLSN2684239 Genevestigator:Q9SG10
Uniprot:Q9SG10
Length = 353
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 216/361 (59%), Positives = 246/361 (68%)
Query: 1 MAVAENAGAKIDSSNQNLXXXXXXXXXXXXXXXXXXXKERSXXXXXXXXXXXXXTKPXXX 60
MAVAENAG K+DSS QNL ++S T
Sbjct: 1 MAVAENAGVKVDSSGQNLDNNNTAASATETTKPPCPDDDQSPKSDSSTPLTIDSTPETDD 60
Query: 61 XXXXFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIXXXXX 120
+ N GE + E++DL D SKLNPMA EFVPPSLA Q
Sbjct: 61 RINETAQKVQTLNGFSGN-GERDNNGEIKDLADAFSKLNPMAQEFVPPSLARSQ------ 113
Query: 121 XXXXXXXXXYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRT 180
+TNNF A+ N H R+R + QGKRRMN RTS AQ+D+VIRRT
Sbjct: 114 SGVLRNGLGFTNNFAAPPK-LADGNDHFP--RRRRSFGQGKRRMNKRTSLAQKDDVIRRT 170
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGT 240
VYVSDIDQQVTEE LA +F+ CGQVVDCR+CGDPNSVLRFAF+EFT+EEGARAALS++GT
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGT 230
Query: 241 MLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVC 300
+LGFYP++VLPSKTAIAPVNPTFLPRSEDEREMC RT+YCTNIDK++TQ D+K FFE +C
Sbjct: 231 VLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMLC 290
Query: 301 GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKTPVRPRAP 360
GEV RLRL GDY H TRIAFVEFAMAESAIAAL+CSG VLG+LPIR VSPSKTPVRP P
Sbjct: 291 GEVHRLRL-GDYHHQTRIAFVEFAMAESAIAALHCSGIVLGALPIR-VSPSKTPVRPHFP 348
Query: 361 R 361
R
Sbjct: 349 R 349
>TAIR|locus:2139242 [details] [associations]
symbol:CID12 "CTC-interacting domain 12" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 InterPro:IPR009818 Pfam:PF07145 EMBL:AL161517
EMBL:AL049523 EMBL:AF118222 EMBL:AF109721 EMBL:AY039599
EMBL:AY078011 EMBL:AY086286 IPI:IPI00524673 PIR:T04196
RefSeq:NP_192799.1 UniGene:At.24082 ProteinModelPortal:Q9S7N9
SMR:Q9S7N9 STRING:Q9S7N9 PRIDE:Q9S7N9 EnsemblPlants:AT4G10610.1
GeneID:826653 KEGG:ath:AT4G10610 TAIR:At4g10610 InParanoid:Q9S7N9
OMA:DMRELHE PhylomeDB:Q9S7N9 ProtClustDB:CLSN2682834
ArrayExpress:Q9S7N9 Genevestigator:Q9S7N9 Uniprot:Q9S7N9
Length = 336
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 206/294 (70%), Positives = 233/294 (79%)
Query: 74 HMERKMG-ESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIXXXXXXXXXXXXXXYTN 132
H+ R G ESFK +MR+L ++LSKLNPMA EF+PPSL + N
Sbjct: 52 HVARSDGGESFKR-DMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAV-----NN 105
Query: 133 NFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTE 192
F+ + N +G + RRK++ QGKRRMN RTS AQ++E+IRRTVYVSDIDQQVTE
Sbjct: 106 GFVAAGNFPVNEDG--SFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTE 163
Query: 193 EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252
EQLA LF+ GQVVDCRICGDPNSVLRFAF+EFTDE GAR AL+L+GTMLGFYPV+V+PS
Sbjct: 164 EQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPS 223
Query: 253 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY 312
KTAIAPVNPTFLPR+EDEREMC+RTIYCTNIDKK+TQ DIKLFFESVCGEV RLRLLGDY
Sbjct: 224 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDY 283
Query: 313 QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKTPVRPRA-PRPPLH 365
H TRI FVEF MAESAIAALNCSG +LGSLPIR VSPSKTPVR RA PR +H
Sbjct: 284 HHPTRIGFVEFVMAESAIAALNCSGVLLGSLPIR-VSPSKTPVRSRAIPRHQMH 336
>TAIR|locus:2035629 [details] [associations]
symbol:CID11 "CTC-interacting domain 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0046482 "para-aminobenzoic acid metabolic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
IPI:IPI00657306 RefSeq:NP_001031131.1 UniGene:At.27546
ProteinModelPortal:F4IEC7 SMR:F4IEC7 PRIDE:F4IEC7
EnsemblPlants:AT1G32790.2 GeneID:840173 KEGG:ath:AT1G32790
OMA:NARTSMA PhylomeDB:F4IEC7 Uniprot:F4IEC7
Length = 406
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 196/269 (72%), Positives = 218/269 (81%)
Query: 80 GESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIXXXXXXXXXXXXXXYTNNFIMHTD 139
GESFK +MR+L ++ SKLNPMA EFVPPSL + NN T
Sbjct: 76 GESFKR-DMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTG 134
Query: 140 --GTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLAT 197
G N NG RRK++ + QGKRRMN RTS AQ+++VIRRTVYVSD+DQQVTEEQLA
Sbjct: 135 NGGYGNENGGF--RRKKS-FGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAG 191
Query: 198 LFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
LF++CGQVVDCRICGDPNSVLRFAF+EFTDEEGA AL+L+GTMLGFYPV+VLPSKTAIA
Sbjct: 192 LFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIA 251
Query: 258 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR 317
PVNPTFLPR+EDEREMC+RTIYCTNIDKKVTQ D+K+FFES CGEV RLRLLGDYQHSTR
Sbjct: 252 PVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTR 311
Query: 318 IAFVEFAMAESAIAALNCSGAVLGSLPIR 346
IAFVEF MAESAIAALNCSG VLGSLPIR
Sbjct: 312 IAFVEFVMAESAIAALNCSGVVLGSLPIR 340
Score = 167 (63.8 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 270 ERE-MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAES 328
+RE + RT+Y +++D++VT+ + F S CG+V R+ GD R AF+EF E
Sbjct: 166 QREDVIRRTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEG 224
Query: 329 AIAALNCSGAVLGSLPIRLVSPSKTPVRPRAP 360
A+ ALN SG +LG P++++ PSKT + P P
Sbjct: 225 AMTALNLSGTMLGFYPVKVL-PSKTAIAPVNP 255
>TAIR|locus:2091657 [details] [associations]
symbol:CID9 "CTC-interacting domain 9" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB028617 HSSP:P11940 HOGENOM:HOG000006309 IPI:IPI00526270
RefSeq:NP_188063.1 UniGene:At.53311 ProteinModelPortal:Q9LRR6
SMR:Q9LRR6 EnsemblPlants:AT3G14450.1 GeneID:820668
KEGG:ath:AT3G14450 TAIR:At3g14450 eggNOG:NOG243629
InParanoid:Q9LRR6 OMA:PRVNRVG PhylomeDB:Q9LRR6
ProtClustDB:CLSN2915572 Genevestigator:Q9LRR6 Uniprot:Q9LRR6
Length = 327
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 184/280 (65%), Positives = 206/280 (73%)
Query: 87 EMRDLVDMLSKLNPMAAEFVPPSL---ANGQIXXXXXXXXXXXXXXYTNNFIMHTDGTAN 143
+M LV M KLNP+A EF P N Q+ D A
Sbjct: 49 DMHKLVAMFKKLNPLAKEFFPSYYDPKKNNQVAKANQFLPADDFETTKKQSGEEFDLDAK 108
Query: 144 TNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCG 203
+ +T RKR YSQG+RR+ R S AQ+++ IRRTVYVSDIDQ VTEE LA LF CG
Sbjct: 109 KDDNT---RKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCG 165
Query: 204 QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTF 263
QVVDCRICGDP+SVLRFAFVEF D++GA ALSL GTMLGFYPVRVLPSKTAI PVNPTF
Sbjct: 166 QVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTF 225
Query: 264 LPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF 323
LPRSEDEREMC+RTIYCTNIDKKV+Q D++ FFES CGEV RLRLLGD HSTRIAFVEF
Sbjct: 226 LPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEF 285
Query: 324 AMAESAIAALNCSGAVLGSLPIRLVSPSKTPVRPRAPRPP 363
A+A+SA++ALNCSG V+GS PIR VSPSKTPVRPR RPP
Sbjct: 286 ALADSALSALNCSGMVVGSQPIR-VSPSKTPVRPRITRPP 324
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 181/279 (64%), Positives = 208/279 (74%)
Query: 87 EMRDLVDMLSKLNPMAAEFVPPSLANGQIXXXXXXXXXXXXXXYTNNFIMHTDGTANTNG 146
+M+ LV M KLNP A EF P N +++F++ + N
Sbjct: 49 QMKKLVAMFKKLNPEAKEFFPSYKRN---------------TNQSDDFVIAIKPSGEDNK 93
Query: 147 HTT-TRRKRNGYSQGKR-RMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQ 204
RR+RN Y+QG+R R+ R S AQ+++ IRRTVYVSDIDQ VTEE LA LF +CGQ
Sbjct: 94 KVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQ 153
Query: 205 VVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL 264
VVDCRICGDPNSVLRFAFVEF+D++GAR+ALSL GTM+G+YPVRVLPSKTAI PVNPTFL
Sbjct: 154 VVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFL 213
Query: 265 PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA 324
PRSEDEREMCSRTIYCTN+DK T+ D+ FF+S CGEV RLRLLGD HSTRIAFVEFA
Sbjct: 214 PRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFA 273
Query: 325 MAESAIAALNCSGAVLGSLPIRLVSPSKTPVRPRAPRPP 363
MAESA+AALNCSG VLGS PIR VSPSKTPVR R R P
Sbjct: 274 MAESAVAALNCSGIVLGSQPIR-VSPSKTPVRSRITRSP 311
>TAIR|locus:2184022 [details] [associations]
symbol:CID13 "CTC-interacting domain 13" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB025641 HOGENOM:HOG000006309 IPI:IPI00536712
RefSeq:NP_197832.1 UniGene:At.54975 ProteinModelPortal:Q9FGE6
SMR:Q9FGE6 EnsemblPlants:AT5G24440.1 GeneID:832515
KEGG:ath:AT5G24440 TAIR:At5g24440 eggNOG:NOG303272
InParanoid:Q9FGE6 OMA:FKLAESA PhylomeDB:Q9FGE6
ProtClustDB:CLSN2916288 Genevestigator:Q9FGE6 Uniprot:Q9FGE6
Length = 320
Score = 753 (270.1 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
Identities = 157/267 (58%), Positives = 195/267 (73%)
Query: 90 DLVDMLSKLNPMAAEFVPPSLANGQIXXXXXXXXXXXXXXYTNNFIMHTDGTANTNGHTT 149
+L +S LNPMA EFVP LA +TN+F T G
Sbjct: 58 NLKSEISHLNPMAKEFVPSFLAQ-----THHSEFWGNRFWFTNHFPKQTIFLI---GQFA 109
Query: 150 TRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR 209
T R RN + +G+ + +T+ Q +++I+RTVYVSDID QVTEEQLA+LFL+CGQVVDCR
Sbjct: 110 TMR-RN-FGKGRPWITKKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCR 167
Query: 210 ICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 269
+CGD S+LRFAF+EFTD EGAR+AL +GTM G +P+RV SKTAIAPVNP+FLP+S+D
Sbjct: 168 MCGDYKSILRFAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKD 227
Query: 270 EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESA 329
E E C +T+YCTNIDK+VT+ +++ FF++VCGEV LRLLGD+ H TRIAFVEF +AESA
Sbjct: 228 ELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESA 287
Query: 330 IAALNCSGAVLGSLPIRLVSPSKTPVR 356
I+ALNCSG VLG LPIR VSPSKTPVR
Sbjct: 288 ISALNCSGVVLGELPIR-VSPSKTPVR 313
Score = 66 (28.3 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 1 MAVAENAGAKIDSSN-QNL 18
MAVAEN G K+DSSN QN+
Sbjct: 1 MAVAENVGVKVDSSNNQNI 19
>UNIPROTKB|F1NA16 [details] [associations]
symbol:Gga.54187 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
OMA:EKEQDKD EMBL:AADN02045988 EMBL:AADN02045989 EMBL:AADN02045990
EMBL:AADN02045991 EMBL:AADN02045992 EMBL:AADN02045993
IPI:IPI00583646 Ensembl:ENSGALT00000023839 Uniprot:F1NA16
Length = 475
Score = 147 (56.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 42/117 (35%), Positives = 62/117 (52%)
Query: 239 GTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKVTQGDIKL- 294
GT LG P L P+ TA+ + P + + + + RT+Y N++ + T D L
Sbjct: 129 GT-LGAIPAAALDPNITALGEIPQPPIMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 187
Query: 295 FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPS 351
FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P++ V+ S
Sbjct: 188 FFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKFVNHS 243
Score = 141 (54.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 33/76 (43%), Positives = 43/76 (56%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 164 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 222
Query: 233 AALSLAGTMLGFYPVR 248
AL+ G M G P++
Sbjct: 223 RALAFNGVMFGDRPLK 238
Score = 66 (28.3 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA----FVEFTDEEGARAALS 236
+ V+++ VT EQ+ TLF G + + R+ N+ L F+ +++F + A
Sbjct: 7 IQVTNLSLAVTSEQMRTLFGFLGDIEELRLYPPDNAPLAFSSKVCYIKFREASSVGVAQH 66
Query: 237 LAGTM 241
L T+
Sbjct: 67 LTNTV 71
>UNIPROTKB|J9P0H2 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 KO:K13165 CTD:140890 OMA:EKEQDKD
EMBL:AAEX03001478 RefSeq:XP_544361.3 Ensembl:ENSCAFT00000044884
GeneID:487233 KEGG:cfa:487233 Uniprot:J9P0H2
Length = 626
Score = 153 (58.9 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 178 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 236
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 237 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 270
Score = 140 (54.3 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 40/132 (30%), Positives = 65/132 (49%)
Query: 235 LSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKVTQGD 291
L ++ + LG P L P+ + + P + + + + RT+Y N++ + T D
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 197
Query: 292 IKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350
L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P+++
Sbjct: 198 QLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS 256
Query: 351 SKTPVRPRAPRP 362
+ V+P P
Sbjct: 257 NNAIVKPPEMTP 268
Score = 77 (32.2 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA----FVEFTDEEGARAALS 236
+ V+++ VT EQ+ TLF G++ + R+ N+ L F+ +V+F D A
Sbjct: 21 IQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSSVGVAQH 80
Query: 237 LAGTM 241
L T+
Sbjct: 81 LTNTV 85
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 58/229 (25%), Positives = 102/229 (44%)
Query: 149 TTRRKRNGYSQGK---RRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV 205
T ++ G + K + T N ++D V+ +YV I Q TE+++ + F +CG +
Sbjct: 128 TPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVI 187
Query: 206 --VDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTF 263
VDC++ + + AF+ F E+GA+ AL+ +G R L + + P+
Sbjct: 188 IKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFDRAAMGD---RYLTIQQYVKTTTPS- 243
Query: 264 LPRSEDER----EMCS--RTIYCTNIDKKVTQGDI-KLFFESVCGEVQ--RLRLLGDYQH 314
+PR + EM +Y N+ T+ DI KLF + V V+ + + G+++
Sbjct: 244 IPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKG 303
Query: 315 STRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKTPVRPRAPRPP 363
A V+F + S AL V+ P+++ K RP P
Sbjct: 304 ---YAHVDFKDSVSVAIALKLDQQVICGRPVKICCALKD--RPATDHTP 347
>RGD|621696 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:621696 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 KO:K13165 CTD:140890
HOVERGEN:HBG079174 OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759
RefSeq:NP_064477.1 UniGene:Rn.161755 ProteinModelPortal:Q9JKL7
STRING:Q9JKL7 PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763
UCSC:RGD:621696 eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 153 (58.9 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 65 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 123
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 124 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 152 (58.6 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 43/136 (31%), Positives = 70/136 (51%)
Query: 231 ARAALSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKV 287
A ++L ++ + LG P L P+ TA+ + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 288 TQGDIKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIR 346
T D L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P++
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 139
Query: 347 LVSPSKTPVRPRAPRP 362
+ + V+P P
Sbjct: 140 INHSNNAIVKPPEMTP 155
>UNIPROTKB|Q9JKL7 [details] [associations]
symbol:Srek1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:621696 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003676 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759 RefSeq:NP_064477.1
UniGene:Rn.161755 ProteinModelPortal:Q9JKL7 STRING:Q9JKL7
PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763 UCSC:RGD:621696
eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 153 (58.9 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 65 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 123
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 124 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 152 (58.6 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 43/136 (31%), Positives = 70/136 (51%)
Query: 231 ARAALSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKV 287
A ++L ++ + LG P L P+ TA+ + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 288 TQGDIKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIR 346
T D L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P++
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 139
Query: 347 LVSPSKTPVRPRAPRP 362
+ + V+P P
Sbjct: 140 INHSNNAIVKPPEMTP 155
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 153 (58.9 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 65 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 123
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 124 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 42/136 (30%), Positives = 69/136 (50%)
Query: 231 ARAALSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKV 287
A ++L ++ + LG P L P+ T + + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 288 TQGDIKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIR 346
T D L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P++
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 139
Query: 347 LVSPSKTPVRPRAPRP 362
+ + V+P P
Sbjct: 140 INHSNNAIVKPPEMTP 155
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 153 (58.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 62 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 120
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 121 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 154
Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 40/132 (30%), Positives = 65/132 (49%)
Query: 235 LSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKVTQGD 291
L ++ + LG P L P+ + + P + + + + RT+Y N++ + T D
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 81
Query: 292 IKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350
L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P+++
Sbjct: 82 QLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS 140
Query: 351 SKTPVRPRAPRP 362
+ V+P P
Sbjct: 141 NNAIVKPPEMTP 152
>UNIPROTKB|E2R749 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:AAEX03001478 Ensembl:ENSCAFT00000012107 Uniprot:E2R749
Length = 510
Score = 153 (58.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 62 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 120
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 121 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 154
Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 40/132 (30%), Positives = 65/132 (49%)
Query: 235 LSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKVTQGD 291
L ++ + LG P L P+ + + P + + + + RT+Y N++ + T D
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 81
Query: 292 IKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350
L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P+++
Sbjct: 82 QLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS 140
Query: 351 SKTPVRPRAPRP 362
+ V+P P
Sbjct: 141 NNAIVKPPEMTP 152
>ZFIN|ZDB-GENE-040801-132 [details] [associations]
symbol:srek1 "splicing regulatory
glutamine/lysine-rich protein 1" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040801-132 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 OrthoDB:EOG4K3KWS HOGENOM:HOG000121772
EMBL:BX950207 EMBL:CU207241 EMBL:CU467961 IPI:IPI00497438
UniGene:Dr.81675 Ensembl:ENSDART00000134937 HOVERGEN:HBG097523
InParanoid:A2BIN4 Uniprot:A2BIN4
Length = 515
Score = 153 (58.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 174 DEVIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
DE IRRTVYV +++ Q T +QL F G V R+ GD RFAFVEF D++
Sbjct: 167 DE-IRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVA 225
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 267
AL+ G M G P+++ S AI P P++
Sbjct: 226 RALTYNGVMFGDRPLKINHSNNAIVKP-PELTPQA 259
Score = 139 (54.0 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 247 VRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKL-FFESVCGEVQR 305
V L + +A P+ P DE RT+Y N++ + T D L FF+ V G+V+
Sbjct: 145 VATLSAVSAQPPLMGNVDPSKVDE---IRRTVYVGNLNSQSTTADQLLKFFKQV-GDVKF 200
Query: 306 LRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKTPVRP 357
+R+ GD TR AFVEFA +S AL +G + G P+++ + V+P
Sbjct: 201 VRMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKINHSNNAIVKP 252
Score = 55 (24.4 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 13/65 (20%), Positives = 32/65 (49%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA----FVEFTDEEGARAALS 236
+ ++++ V+ +Q+ TLF G + + R+ N+ L F+ ++++ + A
Sbjct: 10 IQITNLSAAVSSDQMRTLFGFLGDIDELRLYPPDNAPLSFSSKVCYIKYREPSSVGVAQH 69
Query: 237 LAGTM 241
L T+
Sbjct: 70 LTNTV 74
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 152 (58.6 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 51/194 (26%), Positives = 90/194 (46%)
Query: 167 RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEF 225
+T + +E +Y+ ++D V+E+ L F G++V I D N + R +AFV F
Sbjct: 190 KTDRVKPEEKYTN-LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNF 248
Query: 226 TDEEGAR-AALSLAGTMLG---FYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYC 280
+ E AR AA ++ GT G Y R + F + E+++ + IY
Sbjct: 249 DNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYV 308
Query: 281 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNC-SGA 338
N++ VT+ +++ F S CG + +L+ D + ++ FV F+ E AI A+ G
Sbjct: 309 KNVNVAVTEEELRKHF-SQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQ 367
Query: 339 VLGSLPIRLVSPSK 352
+ P+ + K
Sbjct: 368 MFHGKPLYVAIAQK 381
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 150 (57.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 57/194 (29%), Positives = 95/194 (48%)
Query: 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARA 233
DE +T+YV ++D V+E+ L LF T G V C+I +P + +AF+E+++ + A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 234 ALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
AL+ L + + + A +P N P+++ I+ ++ ++ ++
Sbjct: 61 ALTAMNKRL--FLEKEIKVNWATSPGNQ---PKTDISSH---HHIFVGDLSPEIETETLR 112
Query: 294 LFFESVCGEVQRLRLLGDYQHSTR---IAFVEF---AMAESAIAALNCSGAVLGSLPIRL 347
F GE+ R++ D H+ + AFV F A AE+AI A+N G +GS IR
Sbjct: 113 EAFAPF-GEISNCRIVRD-PHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRT 168
Query: 348 V-SPSKTPVRPRAP 360
S K P PR P
Sbjct: 169 NWSTRKLPP-PREP 181
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 135 (52.6 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 55/200 (27%), Positives = 85/200 (42%)
Query: 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNSVLR--FAFVEFTDE 228
+Q E TV+V D+ VT+ L F V ++ D + + FV F DE
Sbjct: 166 RQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADE 225
Query: 229 -EGARAALSLAGTMLGFYPVRVLPSKT----AIAPVNPTFLPRSEDEREMCSRTIYCTNI 283
E RA + G P+R P+ + P + + E + + TI+ +
Sbjct: 226 SEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAV 285
Query: 284 DKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA---MAESAIAALNCSGAVL 340
D+ VT+ D+K F GE+ +++ R FV++A AE A++ LN G L
Sbjct: 286 DQSVTEDDLKSVFGQF-GELVHVKIPA----GKRCGFVQYANRACAEQALSVLN--GTQL 338
Query: 341 GSLPIRLV---SPSKTPVRP 357
G IRL SPS +P
Sbjct: 339 GGQSIRLSWGRSPSNKQTQP 358
Score = 54 (24.1 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 133 NFIMHTDG-TANTNGHTTTRRKRNGYSQG 160
N++M+ G T R K+NGYS+G
Sbjct: 94 NYLMNVFGLTGEATAAKVIRNKQNGYSEG 122
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 147 (56.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 42/167 (25%), Positives = 79/167 (47%)
Query: 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALS 236
R V+V ++D+ + +QL +F G+V+ C++ D + V + + FV+F + A +
Sbjct: 30 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACN 89
Query: 237 LA-GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 295
GT++ + V P F+ R + ++ +Y N+ + T D+K
Sbjct: 90 FHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLKRL 138
Query: 296 FESVCGEVQRLRLLGDYQ-HSTRIAFVEFAMAESAIAALN-CSGAVL 340
F GE+ ++ D + S R FV F AE+A+ A+ +G V+
Sbjct: 139 FGEF-GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVV 184
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 142 (55.0 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 42/166 (25%), Positives = 80/166 (48%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSLAG 239
+Y+ ++++ + + + F G +++C + D + R + FV F EE ARAA+
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 240 TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS--RTIYCTNIDKKVTQGDIKLFFE 297
ML + + V F+PR + E+E + + +Y N+ ++ T+ ++ FE
Sbjct: 175 GMLC--------NNQKVHVVK--FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFE 224
Query: 298 SVCGEVQRLRLLGDYQ-HSTRIAFVEFAMAESAIAA-LNCSGAVLG 341
G + +L+ D + S R FV + +SA+AA + G LG
Sbjct: 225 PY-GRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 147 (56.8 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 51/170 (30%), Positives = 79/170 (46%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEGARAALSLAG 239
+YV++ E + LF G VVD R N+ RF +V+ + A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHK 727
Query: 240 TMLGF-YPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 298
+L YP++V S P+ T PRS E R +Y TNID KV + D++ FF
Sbjct: 728 KLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFRD 779
Query: 299 VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLV 348
G+V+ +R+ + +V + A AL+ +G LG+ + +V
Sbjct: 780 Y-GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVV 828
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 140 (54.3 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 60/209 (28%), Positives = 99/209 (47%)
Query: 163 RMNCRTSNA--QQDEVIRRTVYVSDIDQQVTEEQLATLFLTC------GQVVDCRICGDP 214
RMN + A ++D+ T++V D+ VT+ L F + +VV RI G
Sbjct: 158 RMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRS 217
Query: 215 NSVLRFAFVEFTDE-EGARAALSLAGTMLGFYPVRVLPS---KTAIAPVNPTFL-PRS-E 268
+ FV+F DE E RA + G + P+R+ P+ K P T+ P++ +
Sbjct: 218 KG---YGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQ 274
Query: 269 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF---AM 325
E + + TI+ +D V + ++ F S GE+ ++++ R FV+F A
Sbjct: 275 GESDPNNTTIFVGGLDPTVAEEHLRQVF-SPYGELVHVKIVA----GKRCGFVQFGTRAS 329
Query: 326 AESAIAALNCSGAVLGSLPIRLVSPSKTP 354
AE A+++LN G LG IRL S ++P
Sbjct: 330 AEQALSSLN--GTQLGGQSIRL-SWGRSP 355
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 137 (53.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 52/182 (28%), Positives = 88/182 (48%)
Query: 159 QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVL 218
+ + R R+S ++E RRTV+VS + ++T +L F G V D +I D S
Sbjct: 220 RSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGR 279
Query: 219 R--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR 276
A+VEF E+ +AA++L+G L PV V ++ A N +E R +
Sbjct: 280 SKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTE---AEKNRKAREAAELARAASAE 336
Query: 277 TIY---C-TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIA 331
+ C +NI +T D+K FE G+++ + L D Q+ ++ ++++ SA
Sbjct: 337 IPFHRLCVSNIHFNLTDEDVKAIFEPF-GDIEFVHLQRDDQNRSKGFGYIQYRNPISARN 395
Query: 332 AL 333
AL
Sbjct: 396 AL 397
Score = 42 (19.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 139 DGTANTNGHTTTRRKRNGYS 158
D N++ H T R R YS
Sbjct: 102 DVVTNSSSHRTPRHHRRSYS 121
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 119 (46.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTD 227
++ + ++VYV ++D VT E+L + F +CG V + C + G P FA++EF++
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFSE 105
Query: 228 EEGARAALSLAGTMLGFYPVRVLPSKTAI 256
AL L G+ML P++V P +T +
Sbjct: 106 PSLVPNALLLNGSMLHERPLKVTPKRTNV 134
Score = 106 (42.4 bits), Expect = 0.00048, P = 0.00048
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 269 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMA 326
D+ + ++++Y N+D VT +++ F S CG V R+ +L D H A++EF+
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFAS-CGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
Query: 327 ESAIAALNCSGAVLGSLPIRLVSPSKTPV 355
AL +G++L P++ V+P +T V
Sbjct: 107 SLVPNALLLNGSMLHERPLK-VTPKRTNV 134
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 137 (53.3 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 44/167 (26%), Positives = 70/167 (41%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEGARAALSL 237
+T++ ++ Q+ + F G+VVD R+ D S + +EF E A+ AL +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297
G +L VR+ + P N P + E SRTIY + + +IK
Sbjct: 444 NGKLLLGRDVRLDLANERGTPRNSN--PGRKGEGSQ-SRTIYVRGFSSSLGEDEIKKELR 500
Query: 298 S---VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLG 341
S CGEV R+ + D + F + AL SG+ +G
Sbjct: 501 SHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLSGSEIG 547
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 133 (51.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 55/196 (28%), Positives = 89/196 (45%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNSVLR--FAFVEFTDE- 228
Q E T++V D+ +VT+ L+ F G V ++ D + + FV F DE
Sbjct: 148 QTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADEN 207
Query: 229 EGARAALSLAGTMLGFYPVRVLPS--KTAIAPVNPTFLPRSED----EREMCSRTIYCTN 282
E RA + G P+R+ P+ K A+ P+ P ++ + + + TI+
Sbjct: 208 EQMRAMTEMNGQYCSTRPMRIGPAANKNAL-PMQPAMYQNTQGANAGDNDPNNTTIFVGG 266
Query: 283 IDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA---MAESAIAALNCSGAV 339
+D VT ++K F GE+ +++ R FV++A AE A++ LN G
Sbjct: 267 LDANVTDDELKSIFGQF-GELLHVKI----PPGKRCGFVQYANKASAEHALSVLN--GTQ 319
Query: 340 LGSLPIRLV---SPSK 352
LG IRL SP+K
Sbjct: 320 LGGQSIRLSWGRSPNK 335
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 135 (52.6 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 47/176 (26%), Positives = 76/176 (43%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-F 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D V + +
Sbjct: 113 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGY 172
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV + E A A+ ML L K + + R EM + I
Sbjct: 173 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNI 225
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAAL 333
Y NID +V + + FE GE+ L D + +R FV F+ ESA AA+
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKF-GEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 58/229 (25%), Positives = 105/229 (45%)
Query: 138 TDGTANTNGHTTTRRKRNGYSQGKRRM----NCRTSNAQ-----QDEVIRRTVYVSDIDQ 188
T T++T+ TT K + S + TS++ +E +RTV+VS + Q
Sbjct: 216 TTSTSSTSSSNTTTNKESSSSSISTSTPPTSSSTTSSSSTLPEPDEESDQRTVFVSKLSQ 275
Query: 189 QVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYP 246
+ E+ L+ LF G V++ R+ D + +VEF+ +E A++L+G++L
Sbjct: 276 NIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMVDKAIALSGSVLDGQQ 335
Query: 247 VRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL 306
+ V +I P S SR IY I V + I++ F+ G++ +
Sbjct: 336 ILV----HSIQPEKKVIKSNSTGSSGGESR-IYVGYIHLSVAEEQIRVIFQPY-GDIDFI 389
Query: 307 RLLGDYQHSTRIAFVEFAMAESAIAALN-CSG-AVLG-SLPIRLVSPSK 352
+ ++ AF++F ESA A+ +G ++G +L + +VS K
Sbjct: 390 NI-HTKPGISKYAFIQFKTQESAKRAITELNGYELMGKNLKLNMVSQEK 437
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 117 (46.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 49/193 (25%), Positives = 84/193 (43%)
Query: 170 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD 227
N +E RTV+ + ++ L F G+V D RI D NS A+VEF +
Sbjct: 172 NLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE 231
Query: 228 EEGARAALSLAGTMLGFYPVRVLPS---KTAIAPVNPTFLPRSEDEREMCSRTIYCTNID 284
+ A+ L G L P+ V S K +A + S + +++C NI
Sbjct: 232 IQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGSGGPVRLYVGSLHC-NIT 290
Query: 285 KKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLG 341
+ + +G ++ F G++ + L+ D + S F+ F+ +E A AL +G L
Sbjct: 291 EDMLRGILEPF-----GKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQLNGFELA 345
Query: 342 SLPIRLVSPSKTP 354
P+R+ ++ P
Sbjct: 346 GRPMRIGHVTERP 358
Score = 54 (24.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 138 TDGTANTNGHTTT---RRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQ 189
TDGT+ NG+ T+ +K+ S K R R+ + +D R+ D+Q
Sbjct: 58 TDGTSAANGNGTSGEASKKKRSRSHSKSRERKRSRSRDRDRHRRKNSRSRSRDRQ 112
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 130 (50.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 54/221 (24%), Positives = 97/221 (43%)
Query: 138 TDGTANTNGHTTTR--RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQL 195
+D ++++ +++ +KR + R + + QD TV+V + V ++ L
Sbjct: 221 SDSSSDSESESSSEDEKKRKAEPASEERP-AKITKPSQDSNETCTVFVGRLSWNVDDQWL 279
Query: 196 ATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALSLAGTM-LGFYPVRVLPS 252
F G +V R+ D S + +V+F E A+AA++ GT + V + S
Sbjct: 280 GQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLS 339
Query: 253 KTAIAPVNPTFLPRSE---DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL 309
A P R+ D+ S T++ N+ T+ D+ F CG++Q +RL
Sbjct: 340 NPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGG-CGDIQSIRLP 398
Query: 310 GDYQHSTRI---AFVEFAMAESAIAALNCSGAVLGSLPIRL 347
D Q S R+ +V F+ +SA + +G + P RL
Sbjct: 399 TDPQ-SGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRL 438
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 121 (47.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 33/105 (31%), Positives = 54/105 (51%)
Query: 155 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-R 209
N SQ + T ++ E ++VYV ++D T E++ F CG V + C R
Sbjct: 55 NTSSQSNSSQSLLTPE-EKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDR 113
Query: 210 ICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254
G P FA+VEFT++EG + AL++ ++L ++V P +T
Sbjct: 114 FSGHPKG---FAYVEFTEKEGMQNALAMTDSLLRGRQIKVDPKRT 155
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 130 (50.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 50/202 (24%), Positives = 86/202 (42%)
Query: 139 DGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATL 198
D + G T + R+R+ + R S ++D RTV+ + Q+V L
Sbjct: 201 DRNSRRRG-TNSPRRRSPPNGADRTTPTELSPEERDA---RTVFCIQLSQRVRARDLEEF 256
Query: 199 FLTCGQVVDCRI--CGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS---K 253
F + G+V D R+ C A++EF D E AL L+G L P+ V + K
Sbjct: 257 FSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEK 316
Query: 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ 313
+ P F P+S +Y ++ +T+ ++ FE G++ ++L+ D +
Sbjct: 317 NRLQNAAPAFQPKSHTG----PMRLYVGSLHFNITEDMLRGIFEPF-GKIDAIQLIMDTE 371
Query: 314 --HSTRIAFVEFAMAESAIAAL 333
S F+ + A+ A AL
Sbjct: 372 TGRSKGYGFITYHNADDAKKAL 393
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 131 (51.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 56/209 (26%), Positives = 90/209 (43%)
Query: 140 GTANTNGHTTTRRKRN----GYSQGKRRMNCRTSNAQQDEVIRRT----VYVSDIDQQVT 191
G A N +TT ++ Y+ K R CR +Q+D +R+T V++ ++D +
Sbjct: 103 GYAYVNYNTTADGEKALEELNYTLIKGRP-CRIMWSQRDPALRKTGQGNVFIKNLDVAID 161
Query: 192 EEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEF-TDEEGARAALSLAGTMLGFYPVRV 249
+ L F G ++ C++ D N + + FV + TDE ++A + G +L V V
Sbjct: 162 NKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 221
Query: 250 ---LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL 306
+P K F DE + IY NI+ +VT + + FE G+V
Sbjct: 222 GHHIPKKDR----QSKF-----DEMKANFTNIYVKNINPEVTDDEFRTLFEKY-GDVTSS 271
Query: 307 RLLGDYQ--HSTRIAFVEFAMAESAIAAL 333
L D + S FV F E A A+
Sbjct: 272 SLARDQETGKSRGFGFVNFTSHEDASKAV 300
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 125 (49.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 52/175 (29%), Positives = 82/175 (46%)
Query: 168 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFT 226
+SN + D+ ++ V+V + VTE L F CG + + +I +P V AF+ F
Sbjct: 67 SSNTKTDDDLK--VFVGQLPSGVTEYDLKEYFSECGDISNIKILNSNPQRVA--AFITFA 122
Query: 227 DEEGARAALSLAGTML-GFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDK 285
DE+G A++ G G +R+ + + P S+ E E TI C NI
Sbjct: 123 DEKGRDTAITYNGKDFNGQGSLRINGANS-----KP-----SDGEGE--PTTIVCRNIAF 170
Query: 286 KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI---AFVEFAMAESAIAALNCSG 337
V + +K FF S CG + R+ L Y+ S R+ AFV F ++ A+ +G
Sbjct: 171 TVDETLVKEFF-SKCGSISRVSL-PVYEDSGRLKGFAFVSFDSEDAVEKAIALTG 223
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 130 (50.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 53/191 (27%), Positives = 91/191 (47%)
Query: 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEE 229
QQ + VYV I ++ E+ + F G + + DP + FAFVE+ E
Sbjct: 123 QQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPE 182
Query: 230 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVT 288
GA+ AL + G ++G ++V + + P + ++E + +R IY +I ++
Sbjct: 183 GAQLALEQMNGALMGGRNIKV--GRPSNMPQAQQVIDEVQEEAKSFNR-IYVASIHPDLS 239
Query: 289 QGDIKLFFESVCGEVQRLRLL-GDYQHSTR-IAFVEFAMAES---AIAALNCSGAVLGSL 343
+ DIK FE+ G + +L G H+ + F+E+A ++ AIA++N LG
Sbjct: 240 EEDIKSVFEAF-GPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFD--LGGQ 296
Query: 344 PIRLVSPSKTP 354
+R V S TP
Sbjct: 297 LLR-VGRSITP 306
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 118 (46.6 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 178 RRTVYVSDIDQQVTEEQLATLFLTCGQV--VDC---RICGDPNSVLRFAFVEFTDEEGAR 232
RR++YV ++D T ++L F +CG V V R G P FA++EF+D E R
Sbjct: 65 RRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKG---FAYIEFSDRESVR 121
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPT 262
A++L T+ ++V P +T I + T
Sbjct: 122 TAMALDETLFRGRVIKVSPKRTNIPGFSTT 151
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 114 (45.2 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 40 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 96
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 97 SVRTSLALDESLFRGRQIKVIPKRT 121
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 128 (50.1 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 48/175 (27%), Positives = 77/175 (44%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSL 237
++YV D+D VT+ QL F QVV R+C D N+ L + +V +++ + A A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ- 105
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297
L + L K + T+ R R ++ N+DK V + F
Sbjct: 106 ---KLNY---SYLNGKM----IRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAF- 154
Query: 298 SVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350
S CG + ++ D+ +R FV+F +SA A+ +G VL I V P
Sbjct: 155 SGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI-FVGP 208
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 126 (49.4 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 44/188 (23%), Positives = 86/188 (45%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R++ V++ ++D+ + + L F G ++ C++ D NS F
Sbjct: 81 CRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGF 140
Query: 221 AFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIY 279
FV + +E A A++ + G M+ V V P K++ PT E+ ++
Sbjct: 141 GFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPT---------EVKFTNVF 191
Query: 280 CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAAL-NCSG 337
N+ + V +K + GE+ + ++ D + ++ F F AE+A + N +G
Sbjct: 192 FKNLSEDVGPDQLKELLQQY-GEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENG 250
Query: 338 AVLGSLPI 345
+ PI
Sbjct: 251 KIFHGKPI 258
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 118 (46.6 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 269 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
D+ E+ SR++Y N+D K T I +F+S CG V R+ +L D H +VEF
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQS-CGTVNRITILSDKTTGHPKGCCYVEFVNK 152
Query: 327 ESAIAALNCSGAVLGSLPIRLVSPSKT 353
ES I A+ + + ++ ++P +T
Sbjct: 153 ESIINAMALNDSFFNERQLK-ITPKRT 178
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 114 (45.2 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 40 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 96
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 97 SVRTSLALDESLFRGRQIKVIPKRT 121
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 124 (48.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 49/202 (24%), Positives = 86/202 (42%)
Query: 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
R R+ + + + + N +E RTV+ + ++ L F G+V D RI
Sbjct: 122 RSRSPFKKDRSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRII 181
Query: 212 GDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVN-PTFLPRSE 268
D NS A++EF D A+ L+G L P+ V S+ A N L +
Sbjct: 182 SDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQ---AEKNRAAALANNL 238
Query: 269 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
+ +Y ++ +T+ ++ FE G + ++L+ D + S F+ F+ A
Sbjct: 239 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIDSIQLMMDSETGRSKGYGFITFSDA 297
Query: 327 ESAIAALN-CSGAVLGSLPIRL 347
E A AL +G L P+++
Sbjct: 298 ECAKKALEQLNGFELAGRPMKV 319
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 100 (40.3 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRI-CGDPNSVLR-FAFVEFTDEEGA-RAALS 236
+VYV + Q TEE+L F + GQ+ + RI C R FAF+EF +E A RA
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 237 LAGTMLGFYPVRV 249
+ G P+RV
Sbjct: 66 MNGAEFNGRPLRV 78
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 51/209 (24%), Positives = 93/209 (44%)
Query: 140 GTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRT-VYVSDIDQQVTEEQLATL 198
G A N + N + N +N +E +T + V+ + Q ++++++ +L
Sbjct: 70 GQATANNAASNNNNNNNNTNNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSL 129
Query: 199 FLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255
F++ G+V C++ D L + FV + +E A A++ L G L ++V +
Sbjct: 130 FVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKV-----S 184
Query: 256 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--- 312
IA P SE + +Y + + K +TQ D++ F S G++ R+L D
Sbjct: 185 IAR------PSSESIK---GANLYVSGLPKNMTQSDLESLF-SPYGKIITSRILCDNITG 234
Query: 313 QH----STRIAFVEFAM---AESAIAALN 334
+H S + F+ F A+ AI LN
Sbjct: 235 EHAAGLSKGVGFIRFDQRFEADRAIKELN 263
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 49/203 (24%), Positives = 88/203 (43%)
Query: 151 RRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 210
++ ++ + + K + N +E RTV+ + ++ L F G+V D R+
Sbjct: 139 KKDKSPFKKDKSPVRQPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRM 198
Query: 211 CGDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE 268
D NS A+VEF D A+ L G + P+ V S+ A N S
Sbjct: 199 ISDRNSRRSKGIAYVEFVDSTSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMASM 255
Query: 269 DEREMCS-RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM 325
+R +Y ++ +T+ ++ FE G+++ ++L+ D + S F+ FA
Sbjct: 256 LQRGGAGPMRLYVGSLHFNITEDMLRGIFEPF-GKIEGIQLMMDSETGRSKGYGFISFAD 314
Query: 326 AESAIAALN-CSGAVLGSLPIRL 347
AE A AL +G L P+++
Sbjct: 315 AECAKKALEQLNGFELAGRPMKV 337
>WB|WBGene00004704 [details] [associations]
symbol:rsp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040017
"positive regulation of locomotion" evidence=IMP] [GO:0019915
"lipid storage" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040010
GO:GO:0002119 GO:GO:0016246 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0040017 GO:GO:0003723 GO:GO:0019915
GO:GO:0000398 EMBL:Z36948 GeneTree:ENSGT00700000104035 EMBL:Z49911
PIR:T20382 RefSeq:NP_741039.1 RefSeq:NP_741040.1
ProteinModelPortal:O01159 SMR:O01159 STRING:O01159 PaxDb:O01159
PRIDE:O01159 EnsemblMetazoa:D2089.1a GeneID:174646
KEGG:cel:CELE_D2089.1 UCSC:D2089.1b.1 CTD:174646 WormBase:D2089.1a
WormBase:D2089.1b eggNOG:NOG277302 InParanoid:O01159 KO:K13165
OMA:CAYAYVE NextBio:884894 Uniprot:O01159
Length = 452
Score = 84 (34.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/105 (27%), Positives = 42/105 (40%)
Query: 258 PVNPTFLPRSEDER--EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL-GDYQH 314
P P LP D E RT+Y N+ K V ++ F GEV R+ G
Sbjct: 144 PAYPP-LPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDAL 202
Query: 315 STRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKTPVRPRA 359
A+VEF+ S AL G P+++ ++P+A
Sbjct: 203 PCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIKPQA 247
Score = 81 (33.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 23/100 (23%), Positives = 50/100 (50%)
Query: 169 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC---GD--PNSVLRFAFV 223
S ++++V + ++V++I T + + +F G++ D ++ G+ N++L+ AF+
Sbjct: 2 SGEEKEKV--KILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFI 59
Query: 224 EFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTF 263
+F DE A L T++ + LP + P +F
Sbjct: 60 KFDDERCVEVAQHLTNTVVIDCAIVCLPYPNPVIPDEESF 99
>GENEDB_PFALCIPARUM|PFF0300w [details] [associations]
symbol:PFF0300w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL844505 RefSeq:XP_966051.1
ProteinModelPortal:C6KSQ9 EnsemblProtists:PFF0300w:mRNA
GeneID:3885781 KEGG:pfa:PFF0300w EuPathDB:PlasmoDB:PF3D7_0606100
HOGENOM:HOG000281446 ProtClustDB:CLSZ2497377 Uniprot:C6KSQ9
Length = 582
Score = 123 (48.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 39/156 (25%), Positives = 70/156 (44%)
Query: 96 SKLN-PMAAEFVPPSLANGQIXXXXXXXXXXXXXXYTNNFIMHTDGTANTNGHTTTRRKR 154
S LN PM + P + N + N+ + + N T +K+
Sbjct: 71 SLLNVPMVVSVIEPIINNTNLSELSTTECDKN----VNSLLDVRNSITNQGVQTLLLQKQ 126
Query: 155 NGYSQGKRRMNCRTS-NAQQD--EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
Q KR ++ + S N + + +V + VY+ +I ++ EE + F G ++
Sbjct: 127 VISEQKKRLVDFQNSLNEKNNKFDVFSKIVYMENIPEKYGEEDIKAFFQNVGNTTSYKLQ 186
Query: 212 GDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPV 247
+ + AFVEF +EE A+AAL+L+GT +G + +
Sbjct: 187 YNEQKKVHTAFVEFKNEEHAKAALNLSGTKVGLHEI 222
Score = 115 (45.5 bits), Expect = 0.00096, P = 0.00096
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 264 LPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF 323
L ++ ++ S+ +Y NI +K + DIK FF++V G +L + Q AFVEF
Sbjct: 142 LNEKNNKFDVFSKIVYMENIPEKYGEEDIKAFFQNV-GNTTSYKLQYNEQKKVHTAFVEF 200
Query: 324 AMAESAIAALNCSGAVLG 341
E A AALN SG +G
Sbjct: 201 KNEEHAKAALNLSGTKVG 218
Score = 41 (19.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGE 302
E+C R Y DK + + + + + GE
Sbjct: 221 EICIRDAYSLINDKDILKNNFSFYSNNTTGE 251
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 44/199 (22%), Positives = 86/199 (43%)
Query: 147 HTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV 206
H+ ++++ Q +++ N + E ++V D+ ++ +QL F G++
Sbjct: 66 HSQQQQQQQMSQQQQQQQQQLVGNNSKPEQFH--IFVGDLSAEIETQQLKDAFTPFGEIS 123
Query: 207 DCRICGDPNSVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRVL------PSKTAIA 257
DCR+ DP ++ + FV F + A A++ + G LG +R P+ A
Sbjct: 124 DCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSIRTNWATRKPPATKADM 183
Query: 258 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVT---QGDIKLFFESVCGEVQRLRLLGDYQH 314
P ++ + T+YC I+ ++ +I S G +Q +R+ D +
Sbjct: 184 NAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKGY 243
Query: 315 STRIAFVEFAMAESAIAAL 333
AFV F+ E+A A+
Sbjct: 244 ----AFVRFSTKEAATHAI 258
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 42/182 (23%), Positives = 77/182 (42%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGA 231
+D V+V +I + +E+L LF G ++ D + + F FV + E A
Sbjct: 29 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 88
Query: 232 -RAALSLAGTMLG---FYPVRVLPSKTAIAPVNPTFLP-RSEDEREMCSRTIYCTNIDKK 286
+A L L G + Y R +A + F R +++ IY N+D+
Sbjct: 89 QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDET 148
Query: 287 VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPI 345
+ +K F S G + R +++ + V F+ E A A++ +G ++GS P+
Sbjct: 149 INDEKLKEEFSSF-GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 207
Query: 346 RL 347
+
Sbjct: 208 HV 209
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 53/195 (27%), Positives = 85/195 (43%)
Query: 160 GKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD----PN 215
G ++MN + Q ++ ++V I + +E+QL LF G V + + D P
Sbjct: 35 GSKKMNGSLDHPDQPDIDSIKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPP 94
Query: 216 SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS 275
FV + + A A + M ++LP + P SE +
Sbjct: 95 QSKGCCFVTYYTRKSALEAQNALHNM------KILPGMHHPIQMKPA---DSEKNNAVED 145
Query: 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL-GDYQHSTRIAFVEFA---MAESAIA 331
R ++ I KK + DI+L F S G+++ R+L G S AFV F MA+SAI
Sbjct: 146 RKLFVGMISKKCNENDIRLMF-SPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIK 204
Query: 332 ALNCSGAVLG-SLPI 345
+++ S + G S PI
Sbjct: 205 SMHQSQTMEGCSSPI 219
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 48/176 (27%), Positives = 86/176 (48%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGA-RAALSL 237
+ V+ +I+ + TEE++ LF G + +I PN + AF+ F D A +A +L
Sbjct: 177 KIVWAGNINPESTEEEVRHLFSQFGYLQAIKII--PNK--QCAFITFADVNCAIQAQFNL 232
Query: 238 AGTMLGFYPVRVLPSKTAIAP-VN---PTFLPRSEDEREMC-SRTIYCTNIDKKVTQGDI 292
GT+ P+++ K AP N F ++ +E ++ ++ N++ V+ +
Sbjct: 233 NGTIFRGLPLKLGFGKVENAPQANFGGGRFDQYNKPHQEETPTKNLWLGNVNSNVSYELL 292
Query: 293 KLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRL 347
K F+ G V +R+L H AFV F ESA AA N +G ++ +P+++
Sbjct: 293 KQIFDQF-GNVDTIRIL----HGRGCAFVNFFTVESAAAARNGLNGTMVCGMPLKI 343
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 32/103 (31%), Positives = 54/103 (52%)
Query: 253 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY 312
K A++ P +E++ + +R++Y N+D K T +I+ F +VCG+V R+ + D
Sbjct: 23 KQALSASKKYMAPTAEEQEKTDARSVYVGNVDWKSTVSEIEEHF-AVCGKVARVTIPKDK 81
Query: 313 --QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKT 353
+ AFVEF ES AL SG + + I +V+ +T
Sbjct: 82 FTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKI-MVTLKRT 123
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGA-RAALSL 237
++Y++++D QV+EE L +F G+V+ + D R FAF+EF + A RA L +
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 238 AGTMLG 243
G ++G
Sbjct: 78 DGRLIG 83
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 43/155 (27%), Positives = 71/155 (45%)
Query: 207 DCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYP---VRVLPSK-TAIAPVNP 261
+C + DP +R E +E LS +G P ++++ SK TA
Sbjct: 19 ECEL-DDPELKAIRMRVREMEEEAERLKGLSGQDKSIGVSPRPCMKLIHSKMTAGEYTEG 77
Query: 262 TFLPRS-EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRI 318
P S E+++E+ R++Y N+D T D++ F S CG + R+ +L D H
Sbjct: 78 PPRPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSS-CGSINRITILCDKFSGHPKGY 136
Query: 319 AFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKT 353
A++EFA S AA+ V I+++ P +T
Sbjct: 137 AYIEFAERNSVDAAVTMDETVFRGRTIKVL-PKRT 170
Score = 111 (44.1 bits), Expect = 0.00041, P = 0.00041
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 157 YSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RIC 211
Y++G R S ++ E+ +R+VYV ++D T + L F +CG + + C +
Sbjct: 74 YTEGPPRP---LSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFS 130
Query: 212 GDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 262
G P +A++EF + AA+++ T+ ++VLP +T + ++ T
Sbjct: 131 GHPKG---YAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
Identities = 53/213 (24%), Positives = 86/213 (40%)
Query: 140 GTANTNGHTTTRRKRNGYSQGKRR-MNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATL 198
G + + RR R KR R+ +DE RRT++V + ++ ++L
Sbjct: 134 GRSRRDERDEERRPRREREPRKRSDSRDRSPELNEDERDRRTIFVQQLAARLRTKELIAF 193
Query: 199 FLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAI 256
F G V + +I D S +VEF DE A+ L G L P+ ++
Sbjct: 194 FEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQLTGQKLLGIPIIAQLTEAEK 253
Query: 257 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHST 316
S ++ +Y NI + + D++ FE GE++ ++L D +
Sbjct: 254 NRQARNSEASSGNKHSAPFHRLYVGNIHFSIDENDLQSVFEPF-GELEFVQLQKDETGRS 312
Query: 317 R-IAFVEFAMAESAIAALN-CSGAVLGSLPIRL 347
R FV+F A AL +G LG IR+
Sbjct: 313 RGYGFVQFRDPNQAREALEKMNGYDLGGRAIRV 345
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 97 (39.2 bits), Expect = 0.00021, P = 0.00021
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGA-RAALS 236
+VYV ++ Q TEE++ F G V + RI D + FAFVEF++E GA RA
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 237 LAGTMLGFYPVRV 249
L G +RV
Sbjct: 67 LNGVAFNGRNLRV 79
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 113 (44.8 bits), Expect = 0.00022, P = 0.00022
Identities = 50/194 (25%), Positives = 85/194 (43%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 233 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 290
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 291 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 345
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 346 RLVSPSKTPVRPRA 359
R ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 52/192 (27%), Positives = 85/192 (44%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
+D+ RT+YV ++ + VTE + LF G C++ + S + FVEF + A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 292
AAL+ M G R + K VN P S+ + ++ ++ ++T DI
Sbjct: 63 AALA---AMNG----RKILGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 113
Query: 293 KLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRL 347
K F G++ R++ D S FV F AE+AI ++ G LG IR
Sbjct: 114 KSAFAPF-GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI--VHMGGQWLGGRQIRT 170
Query: 348 VSPSKTPVRPRA 359
++ P P++
Sbjct: 171 NWATRKPPAPKS 182
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 52/192 (27%), Positives = 85/192 (44%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
+D+ RT+YV ++ + VTE + LF G C++ + S + FVEF + A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 292
AAL+ M G R + K VN P S+ + ++ ++ ++T DI
Sbjct: 63 AALA---AMNG----RKILGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 113
Query: 293 KLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRL 347
K F G++ R++ D S FV F AE+AI ++ G LG IR
Sbjct: 114 KSAFAPF-GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI--VHMGGQWLGGRQIRT 170
Query: 348 VSPSKTPVRPRA 359
++ P P++
Sbjct: 171 NWATRKPPAPKS 182
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 51/223 (22%), Positives = 91/223 (40%)
Query: 132 NNFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVT 191
N I H +G N R + + + +R RT +D V+V +I +
Sbjct: 159 NRAIWHMNGVRLNNRQVYVGRFK--FPE-ERAAEVRT----RDRATFTNVFVKNIGDDID 211
Query: 192 EEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGA-RAALSLAGTMLG---FYP 246
+E+L LF G ++ D + + F FV + E A +A L L G + Y
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 247 VRVLPSKTAIAPVNPTFLP-RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR 305
R +A + F R +++ IY N+D+ + +K F S G + R
Sbjct: 272 GRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSF-GSISR 330
Query: 306 LRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRL 347
+++ + V F+ E A A++ +G ++GS P+ +
Sbjct: 331 AKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 121 (47.7 bits), Expect = 0.00024, P = 0.00024
Identities = 48/160 (30%), Positives = 71/160 (44%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGA-RAALSL 237
++Y D+D +VTE L LF VV R+C D N L +A++ F++ A RA +L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 298 --SVCGEVQRLRLLGDYQ-HSTRIAFVEFAMAESAIAALN 334
S G + ++ D S FV+F ESA AA++
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAID 194
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 164 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 220
Query: 230 GARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTF--LPRS 267
R +L+L ++ ++V+P +T ++ T PRS
Sbjct: 221 SVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRS 260
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 53/210 (25%), Positives = 90/210 (42%)
Query: 149 TTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC 208
T + N Q ++ S +Q E ++YV D++ V+E L +F G V
Sbjct: 8 TAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSI 67
Query: 209 RICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 266
R+C D + L +A+V F D E R A+ L + P++ + + +P+
Sbjct: 68 RVCRDAITKTSLGYAYVNFNDHEAGRKAIE----QLNYTPIKGRLCRIMWSQRDPSL--- 120
Query: 267 SEDEREMCSRTIYCTNIDKKVTQGDIKLFFE--SVCGEVQRLRLLGDYQHSTR-IAFVEF 323
R+ S I+ N+ + D K ++ SV G++ ++ D ++ FV F
Sbjct: 121 ----RKKGSGNIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHF 173
Query: 324 ---AMAESAIAALNCSGAVLGSLPIRLVSP 350
A+ AI ALN G +L I V+P
Sbjct: 174 EEEGAAKEAIDALN--GMLLNGQEI-YVAP 200
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 115 (45.5 bits), Expect = 0.00029, P = 0.00029
Identities = 52/192 (27%), Positives = 84/192 (43%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 292
AAL+ M G R + K VN P S+ + ++ ++ ++T DI
Sbjct: 61 AALA---AMNG----RKIMGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 111
Query: 293 KLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRL 347
K F G + R++ D S FV F AE+AI + G LG IR
Sbjct: 112 KAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRT 168
Query: 348 VSPSKTPVRPRA 359
++ P P++
Sbjct: 169 NWATRKPPAPKS 180
>SGD|S000005846 [details] [associations]
symbol:HSH49 "U2-snRNP associated splicing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP;IPI] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005846 EMBL:BK006948 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 GO:GO:0005686 GO:GO:0071004 EMBL:X90565
GeneTree:ENSGT00690000101901 EMBL:Z75227 EMBL:AY558437 PIR:S58329
RefSeq:NP_014964.1 ProteinModelPortal:Q99181 SMR:Q99181
DIP:DIP-930N IntAct:Q99181 MINT:MINT-391267 STRING:Q99181
PaxDb:Q99181 PeptideAtlas:Q99181 EnsemblFungi:YOR319W GeneID:854497
KEGG:sce:YOR319W CYGD:YOR319w eggNOG:NOG282907 HOGENOM:HOG000200535
KO:K12831 OMA:QEATVYL OrthoDB:EOG4Q886Z NextBio:976831
Genevestigator:Q99181 GermOnline:YOR319W Uniprot:Q99181
Length = 213
Score = 112 (44.5 bits), Expect = 0.00029, P = 0.00029
Identities = 43/164 (26%), Positives = 76/164 (46%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR----FAFVEFTDEEGARAAL 235
TVYV +ID ++T+EQL LF+ V+ RI + VL+ +AF+EF ++ A+ A+
Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVL--RIKYPKDKVLQAYQGYAFIEFYNQGDAQYAI 67
Query: 236 SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS--RTIYCTNIDKKVTQGD-I 292
+ + Y R++ + T LP S ++M ++ N+ + +
Sbjct: 68 KIMNNTVRLYD-RLIKVRQVTNSTGTTNLP-SNISKDMILPIAKLFIKNLADSIDSDQLV 125
Query: 293 KLF--FESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334
K+F F + E + L + F +F A+ AI +LN
Sbjct: 126 KIFNKFGKLIREPEIFYLSNGKLKCAYVYFEDFEKADLAIKSLN 169
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 50/191 (26%), Positives = 83/191 (43%)
Query: 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARA 233
DE RT+YV ++ + VTE + +F G C++ D + FVEF + A A
Sbjct: 4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAA 63
Query: 234 ALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
AL+ M G R + K VN P S+ + ++ ++ +++ D++
Sbjct: 64 ALA---AMNG----RKILGKDM--KVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVR 114
Query: 294 LFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRLV 348
F G++ R++ D S F+ F AESAI +N G LG IR
Sbjct: 115 AAFAPF-GKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMN--GQWLGGRQIRTN 171
Query: 349 SPSKTPVRPRA 359
++ P P++
Sbjct: 172 WATRKPSAPKS 182
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 114 (45.2 bits), Expect = 0.00035, P = 0.00035
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 137 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 193
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 194 SVRTSLALDESLFRGRQIKVIPKRT 218
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 117 (46.2 bits), Expect = 0.00036, P = 0.00036
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
R ++ + + K + N +E RTV+ + ++ L F T G+V D R+
Sbjct: 126 RSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 185
Query: 212 GDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 269
D NS A+VEF D A+ L G + P+ V S+ A N +
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNL 242
Query: 270 EREMCS-RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
++ +Y ++ +T+ ++ FE G ++ ++L+ D + S F+ F+ +
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDS 301
Query: 327 ESAIAALN-CSGAVLGSLPIRL 347
E A AL +G L P+++
Sbjct: 302 ECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 115 (45.5 bits), Expect = 0.00040, P = 0.00040
Identities = 55/216 (25%), Positives = 92/216 (42%)
Query: 156 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 215
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 104 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 163
Query: 216 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 271
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 164 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 221
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 329
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 222 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 278
Query: 330 IAALNCSGAV-LGSLPIRLVSPSKTPVRPR-APRPP 363
A++ LG +R V + TP P P P
Sbjct: 279 QDAVSSMNLFDLGGQYLR-VGKAVTPPMPLLTPATP 313
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 111 (44.1 bits), Expect = 0.00041, P = 0.00041
Identities = 29/120 (24%), Positives = 60/120 (50%)
Query: 148 TTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV-- 205
T ++ Y++G + S ++ E+ +R+VYV ++D T + L F +CG +
Sbjct: 65 THSKMTAGAYTEGPPQP---LSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINR 121
Query: 206 --VDC-RICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 262
+ C + G P +A++EF + AA+++ T+ ++VLP +T + ++ T
Sbjct: 122 ITILCDKFSGHPKG---YAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 178
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 118 (46.6 bits), Expect = 0.00042, P = 0.00042
Identities = 45/175 (25%), Positives = 77/175 (44%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG--DPNSVLRFAFVEFTDEEGARAALS 236
+T++ +++ + + F G+VVD R D S F VEF E A+ AL
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 237 LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDEREMCS----RTIYCTNIDKKVTQGD 291
G L +R+ + + P F P+S + R + I+ D +++ D
Sbjct: 357 FHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDD 416
Query: 292 IKLFFE---SVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNCSGAVLG 341
IK S CGE++ + + D +S IA++EF+ E AL +G+ +G
Sbjct: 417 IKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS--EGKEKALELNGSDMG 469
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 114 (45.2 bits), Expect = 0.00042, P = 0.00042
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 164 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 220
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 221 SVRTSLALDESLFRGRQIKVIPKRT 245
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 114 (45.2 bits), Expect = 0.00044, P = 0.00044
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 114 (45.2 bits), Expect = 0.00044, P = 0.00044
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 114 (45.2 bits), Expect = 0.00044, P = 0.00044
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 114 (45.2 bits), Expect = 0.00044, P = 0.00044
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 94 (38.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 245 YPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ 304
YPV V PS A APV P D C+ TI N+D+ VT+ ++K F + GEV
Sbjct: 211 YPVTV-PSAVA-APVQAYVAPPESDVT--CT-TISVANLDQNVTEEELKKAFSQL-GEVI 264
Query: 305 RLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTP 354
+++ + +V+F SA A+ G V+G +R +S SK P
Sbjct: 265 YVKIPATKGYG----YVQFKTRPSAEEAVQRMQGQVIGQQAVR-ISWSKNP 310
Score = 64 (27.6 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCR-----ICGDPNSVLRFAFVEFTDEEGARA 233
RT+++ D+ V E L + F G++V + I G P + F+EF A
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEG---YGFIEFISHAAAER 80
Query: 234 AL-SLAGTML 242
L + GT +
Sbjct: 81 TLQTYNGTQM 90
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 115 (45.5 bits), Expect = 0.00047, P = 0.00047
Identities = 55/216 (25%), Positives = 92/216 (42%)
Query: 156 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 215
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 63 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 122
Query: 216 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 271
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 123 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 180
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 329
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 181 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 237
Query: 330 IAALNCSGAV-LGSLPIRLVSPSKTPVRPR-APRPP 363
A++ LG +R V + TP P P P
Sbjct: 238 QDAVSSMNLFDLGGQYLR-VGKAVTPPMPLLTPATP 272
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 115 (45.5 bits), Expect = 0.00048, P = 0.00048
Identities = 39/179 (21%), Positives = 80/179 (44%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVL-RFAFVEFTDEEGARAALS-LA 238
VY+ + + +E L ++F GQ + ++ D + RF FV F + A+ A+ +
Sbjct: 192 VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMN 251
Query: 239 GTMLGFYPVRVLPSKTAI---APVNPTFLPRSEDE-REMCSRTIYCTNIDKKVTQGDIKL 294
G + + V ++ + A + F ++ R + +Y N+D + ++
Sbjct: 252 GRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRK 311
Query: 295 FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL-NCSGAVLGSLPIRLVSPSK 352
F SV G + R++++ + S + F E+A A+ +G +LGS P+ + K
Sbjct: 312 EF-SVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQK 369
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 115 (45.5 bits), Expect = 0.00049, P = 0.00049
Identities = 52/192 (27%), Positives = 84/192 (43%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 292
AAL+ M G R + K VN P S+ + ++ ++ ++T DI
Sbjct: 61 AALA---AMNG----RKIMGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 111
Query: 293 KLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRL 347
K F G + R++ D S FV F AE+AI + G LG IR
Sbjct: 112 KAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRT 168
Query: 348 VSPSKTPVRPRA 359
++ P P++
Sbjct: 169 NWATRKPPAPKS 180
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 117 (46.2 bits), Expect = 0.00049, P = 0.00049
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
R ++ + + K + N +E RTV+ + ++ L F T G+V D R+
Sbjct: 126 RSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 185
Query: 212 GDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 269
D NS A+VEF D A+ L G + P+ V S+ A N +
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNL 242
Query: 270 EREMCS-RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
++ +Y ++ +T+ ++ FE G ++ ++L+ D + S F+ F+ +
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDS 301
Query: 327 ESAIAALN-CSGAVLGSLPIRL 347
E A AL +G L P+++
Sbjct: 302 ECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
R ++ + + K + N +E RTV+ + ++ L F T G+V D R+
Sbjct: 126 RSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 185
Query: 212 GDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 269
D NS A+VEF D A+ L G + P+ V S+ A N +
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNL 242
Query: 270 EREMCS-RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
++ +Y ++ +T+ ++ FE G ++ ++L+ D + S F+ F+ +
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDS 301
Query: 327 ESAIAALN-CSGAVLGSLPIRL 347
E A AL +G L P+++
Sbjct: 302 ECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
R ++ + + K + N +E RTV+ + ++ L F T G+V D R+
Sbjct: 126 RSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 185
Query: 212 GDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 269
D NS A+VEF D A+ L G + P+ V S+ A N +
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNL 242
Query: 270 EREMCS-RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
++ +Y ++ +T+ ++ FE G ++ ++L+ D + S F+ F+ +
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDS 301
Query: 327 ESAIAALN-CSGAVLGSLPIRL 347
E A AL +G L P+++
Sbjct: 302 ECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
R ++ + + K + N +E RTV+ + ++ L F T G+V D R+
Sbjct: 126 RSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 185
Query: 212 GDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 269
D NS A+VEF D A+ L G + P+ V S+ A N +
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNL 242
Query: 270 EREMCS-RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
++ +Y ++ +T+ ++ FE G ++ ++L+ D + S F+ F+ +
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDS 301
Query: 327 ESAIAALN-CSGAVLGSLPIRL 347
E A AL +G L P+++
Sbjct: 302 ECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
R ++ + + K + N +E RTV+ + ++ L F T G+V D R+
Sbjct: 126 RSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 185
Query: 212 GDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 269
D NS A+VEF D A+ L G + P+ V S+ A N +
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNL 242
Query: 270 EREMCS-RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
++ +Y ++ +T+ ++ FE G ++ ++L+ D + S F+ F+ +
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDS 301
Query: 327 ESAIAALN-CSGAVLGSLPIRL 347
E A AL +G L P+++
Sbjct: 302 ECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
R ++ + + K + N +E RTV+ + ++ L F T G+V D R+
Sbjct: 126 RSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 185
Query: 212 GDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 269
D NS A+VEF D A+ L G + P+ V S+ A N +
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNL 242
Query: 270 EREMCS-RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
++ +Y ++ +T+ ++ FE G ++ ++L+ D + S F+ F+ +
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDS 301
Query: 327 ESAIAALN-CSGAVLGSLPIRL 347
E A AL +G L P+++
Sbjct: 302 ECAKKALEQLNGFELAGRPMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
R ++ + + K + N +E RTV+ + ++ L F T G+V D R+
Sbjct: 126 RSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 185
Query: 212 GDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 269
D NS A+VEF D A+ L G + P+ V S+ A N +
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNL 242
Query: 270 EREMCS-RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
++ +Y ++ +T+ ++ FE G ++ ++L+ D + S F+ F+ +
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDS 301
Query: 327 ESAIAALN-CSGAVLGSLPIRL 347
E A AL +G L P+++
Sbjct: 302 ECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 211
R ++ + + K + N +E RTV+ + ++ L F T G+V D R+
Sbjct: 126 RSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 185
Query: 212 GDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 269
D NS A+VEF D A+ L G + P+ V S+ A N +
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNL 242
Query: 270 EREMCS-RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
++ +Y ++ +T+ ++ FE G ++ ++L+ D + S F+ F+ +
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDS 301
Query: 327 ESAIAALN-CSGAVLGSLPIRL 347
E A AL +G L P+++
Sbjct: 302 ECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 46/165 (27%), Positives = 73/165 (44%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV-----LRFAFVEFTDEEGARAA 234
T+++ +++ TEE L +F G V C I N + F FVE+ E A+ A
Sbjct: 736 TLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKA 795
Query: 235 LS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
L L G ++ + + V S+ A P PT + + R+ + I NI + +I+
Sbjct: 796 LKQLQGHVVDGHKLEVRISERATKPA-PTATRKKQVARKQTTSKILVRNIPFQADSREIR 854
Query: 294 LFFESVCGEVQRLRL----LGDYQHSTRIAFVEFAMAESAIAALN 334
F S GE++ +RL G H FV+F + A A N
Sbjct: 855 ELF-STFGELKTVRLPKKMTGTGTHRG-FGFVDFFTKQDAKRAFN 897
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 117 (46.2 bits), Expect = 0.00051, P = 0.00051
Identities = 44/165 (26%), Positives = 76/165 (46%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG 239
+YV ++D +T L +F G ++ C++ + F FV+F E+ A +A S L G
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 240 TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESV 299
+M+ Y ++ +K I + ++D S +Y N+ + VT + F S
Sbjct: 174 SMV--YGKKLFVAKF-INKDERAAMAGNQD-----STNVYVKNLIETVTDDCLHTLF-SQ 224
Query: 300 CGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAAL-NCSGAVLGS 342
G V + ++ D +R FV F E+A A+ + G LGS
Sbjct: 225 YGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGS 269
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 118 (46.6 bits), Expect = 0.00052, P = 0.00052
Identities = 45/166 (27%), Positives = 80/166 (48%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + G V R+C D L +A+V F + E+G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ +P+ R+M + ++ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQR-----DPSL-------RKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 297 ESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAAL-NCSGAVL 340
S G++ ++ D + + FV F ESA AA+ + +G +L
Sbjct: 189 -SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLL 233
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 113 (44.8 bits), Expect = 0.00052, P = 0.00052
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 158 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFSDKE 214
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 215 SVRTSLALDESLFRGRQIKVVPKRT 239
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 108 (43.1 bits), Expect = 0.00055, P = 0.00055
Identities = 47/179 (26%), Positives = 86/179 (48%)
Query: 165 NCRTS-NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFA 221
NC + ++ E + + V+ + Q +T+E+L +LF + G++ C++ D L +
Sbjct: 24 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 222 FVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDEREMCSRTIYC 280
FV + D + A A++ T+ G +R L +KT + ++ P S R+ +Y
Sbjct: 84 FVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSASIRDA---NLYV 129
Query: 281 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM---AESAIAALN 334
+ + K +TQ +++ F S G + R+L D S + F+ F AE AI LN
Sbjct: 130 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 93 (37.8 bits), Expect = 0.00057, P = 0.00057
Identities = 20/76 (26%), Positives = 39/76 (51%)
Query: 171 AQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFT 226
+Q+D +R++ V++ ++D+ + + L F G ++ C++ D N +AFV F
Sbjct: 31 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFE 90
Query: 227 DEEGARAALSLAGTML 242
+E A A+ ML
Sbjct: 91 TQEAADKAIEKMNGML 106
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 117 (46.2 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 46/181 (25%), Positives = 81/181 (44%)
Query: 159 QGKRRMNCRTSNAQQD-EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV 217
+G RR + + D E +RTV+ + + TE + F G+V D R+ D NS
Sbjct: 147 RGSRRHRDKKDEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 206
Query: 218 LR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA--IAPVNPTFLPRSEDEREM 273
++EF D A++L+G + PV V PS+ +A N T + +
Sbjct: 207 RSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGP---- 262
Query: 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIA 331
R +Y N+ +++ ++ FE+ G V+ ++L D + F++F E + A
Sbjct: 263 ADRKLYVGNLHFNMSELQLRQIFEAF-GPVELVQLPLDPETGQCKGFGFIQFVQLEHSKA 321
Query: 332 A 332
A
Sbjct: 322 A 322
Score = 40 (19.1 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 139 DGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDE 175
DG N G R+R+ S+ K R + +D+
Sbjct: 64 DGEENGGGKRDRERERHRSSRDKDRERDKVREGSRDK 100
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 116 (45.9 bits), Expect = 0.00062, P = 0.00062
Identities = 51/193 (26%), Positives = 87/193 (45%)
Query: 162 RRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD----PNSV 217
++MN + Q ++ ++V + + +E+ L LF G V + + D P
Sbjct: 26 KKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQS 85
Query: 218 LRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT 277
FV F +AAL + + ++VLP + P SE + R
Sbjct: 86 KGCCFVTFYTR---KAALEAQNAL---HNMKVLPGMHHPIQMKPA---DSEKNNAVEDRK 136
Query: 278 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL-GDYQHSTRIAFVEF---AMAESAIAAL 333
++ I KK T+ DI++ F S G+++ R+L G S AFV F AMA++AI A+
Sbjct: 137 LFIGMISKKCTENDIRVMFSSF-GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195
Query: 334 NCSGAVLG-SLPI 345
+ + + G S P+
Sbjct: 196 HQAQTMEGCSSPM 208
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 112 (44.5 bits), Expect = 0.00062, P = 0.00062
Identities = 50/186 (26%), Positives = 80/186 (43%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLA 238
+T+YV ++ + VTE + LF G +C++ D + FVEF + A AAL+
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALA-- 60
Query: 239 GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 298
M G R + K VN P S+ + ++ ++ ++T DIK F
Sbjct: 61 -AMNG----RKIMGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAP 113
Query: 299 VCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRLVSPSKT 353
G + R++ D S FV F AE+AI + G LG IR ++
Sbjct: 114 F-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRTNWATRK 170
Query: 354 PVRPRA 359
P P++
Sbjct: 171 PPAPKS 176
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 116 (45.9 bits), Expect = 0.00062, P = 0.00062
Identities = 51/193 (26%), Positives = 87/193 (45%)
Query: 162 RRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD----PNSV 217
++MN + Q ++ ++V + + +E+ L LF G V + + D P
Sbjct: 26 KKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQS 85
Query: 218 LRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT 277
FV F +AAL + + ++VLP + P SE + R
Sbjct: 86 KGCCFVTFYTR---KAALEAQNAL---HNMKVLPGMHHPIQMKPA---DSEKNNAVEDRK 136
Query: 278 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL-GDYQHSTRIAFVEF---AMAESAIAAL 333
++ I KK T+ DI++ F S G+++ R+L G S AFV F AMA++AI A+
Sbjct: 137 LFIGMISKKCTENDIRVMFSSF-GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195
Query: 334 NCSGAVLG-SLPI 345
+ + + G S P+
Sbjct: 196 HQAQTMEGCSSPM 208
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 113 (44.8 bits), Expect = 0.00063, P = 0.00063
Identities = 52/191 (27%), Positives = 85/191 (44%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALS-L 237
VYV I ++ E+ + F G + + D ++ FAFVE+ E A+ AL +
Sbjct: 113 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 172
Query: 238 AGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
MLG ++V PS I P +E+ R +R IY ++ + ++ DIK F
Sbjct: 173 NSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF-NR-IYVASVHQDLSDDDIKSVF 228
Query: 297 ESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESAIAALNCSGAV-LGSLPIRLVSPSKT 353
E+ G+++ L D F+E+ A+S+ A++ LG +R V + T
Sbjct: 229 EAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR-VGKAVT 286
Query: 354 PVRPR-APRPP 363
P P P P
Sbjct: 287 PPMPLLTPATP 297
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 52/188 (27%), Positives = 90/188 (47%)
Query: 155 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP 214
NGY +CR D++ R + V+ + Q +T+E+L +LF + G+V ++ D
Sbjct: 3 NGYEDHMAE-DCR------DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDK 55
Query: 215 --NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDER 271
L + FV + + A A+S T+ G +R L SKT + ++ P SE +
Sbjct: 56 VAGHSLGYGFVNYVTAKDAERAIS---TLNG---LR-LQSKT----IKVSYARPSSEVIK 104
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMA 326
+ +Y + + + +TQ D++ F S G + R+L D S +AF+ F + A
Sbjct: 105 DA---NLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 327 ESAIAALN 334
E AI + N
Sbjct: 161 EEAITSFN 168
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 52/188 (27%), Positives = 90/188 (47%)
Query: 155 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP 214
NGY +CR D++ R + V+ + Q +T+E+L +LF + G+V ++ D
Sbjct: 3 NGYEDHMAE-DCR------DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDK 55
Query: 215 --NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDER 271
L + FV + + A A+S T+ G +R L SKT + ++ P SE +
Sbjct: 56 VAGHSLGYGFVNYVTAKDAERAIS---TLNG---LR-LQSKT----IKVSYARPSSEVIK 104
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMA 326
+ +Y + + + +TQ D++ F S G + R+L D S +AF+ F + A
Sbjct: 105 DA---NLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 327 ESAIAALN 334
E AI + N
Sbjct: 161 EEAITSFN 168
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 107 (42.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 36/174 (20%), Positives = 76/174 (43%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALS-LA 238
VY+ + + +E+L +F G+ + ++ D + + F FV F E A+ A+ +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 239 GTMLGFYPVRVLPSKTAI---APVNPTFLPRSEDEREMCSRT-IYCTNIDKKVTQGDIKL 294
G + + V ++ + A + F + C +Y N+D + ++
Sbjct: 252 GRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRN 311
Query: 295 FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRL 347
F S G + R++++ + S + F+ E A A+ +G +LGS P+ +
Sbjct: 312 EFSSF-GSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364
Score = 46 (21.3 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 65 FVNVNASDNHMERKMGESFKDCEM-----RDLVDMLSKLNPMAAEFVPPSLAN 112
F N +A+D +E G+ K C++ ++ D ++L A+EF + N
Sbjct: 144 FQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKN 196
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 115 (45.5 bits), Expect = 0.00069, P = 0.00069
Identities = 51/212 (24%), Positives = 97/212 (45%)
Query: 159 QGKRRMNCRTSNAQQDEVIRR-TVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDP-N 215
Q +++M + QQ + ++Y+ D+ VT++QL F V R+ D
Sbjct: 92 QQQQQMQQQQQQQQQQQSDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSAT 151
Query: 216 SVLR-FAFVEF-TDEEGARAALSLAGTMLGFYPVRVL-PSKTAIAPVNPTFLPRSEDERE 272
+ R + FV+F +D E +A + + G + P++V P+ + T + +
Sbjct: 152 GISRGYGFVKFASDVEKDKALIDMNGFYINNKPIKVNNPTHKRLNSQTSTIPDLTSTDPN 211
Query: 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAA 332
+ IY + +D + +G ++ F + GE+ +++L + + S AFV F ESA AA
Sbjct: 212 --NTAIYVSQLDHYIDEGVLQTIFGAY-GEISYIKMLTN-KFS---AFVNFVNRESAEAA 264
Query: 333 LNCSGAVLGSLPIRLVSPSKTPVRPRAPRPPL 364
+ +G+ ++ V K V P PP+
Sbjct: 265 FGLNNFPVGNTRLK-VQWGKN-VAPPPKSPPM 294
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 112 (44.5 bits), Expect = 0.00069, P = 0.00069
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 159 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYIEFSDKE 215
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 216 SVRTSLALDESLFRGRQIKVVPKRT 240
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 116 (45.9 bits), Expect = 0.00070, P = 0.00070
Identities = 57/214 (26%), Positives = 94/214 (43%)
Query: 160 GKRRMNCRTSNAQQDEV--IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV 217
GK + ++ AQ+ I VYV I ++ E+ + F G + + D ++
Sbjct: 109 GKPLLPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTM 168
Query: 218 LR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDEREM 273
FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 169 KHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF 226
Query: 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESAIA 331
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 227 -NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQD 283
Query: 332 ALNCSGAV-LGSLPIRLVSPSKTPVRPR-APRPP 363
A++ LG +R V + TP P P P
Sbjct: 284 AVSSMNLFDLGGQYLR-VGKAVTPPMPLLTPATP 316
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 109 (43.4 bits), Expect = 0.00070, P = 0.00070
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGA 231
++EV R+VYV ++D T E++ F TCG V I D + FA+VEF + E
Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAV 142
Query: 232 RAALSLAGTMLGFYPVRVLPSKTAI 256
+ AL L + L ++V P +T +
Sbjct: 143 QEALQLNESELHGRQLKVSPKRTNV 167
Score = 109 (43.4 bits), Expect = 0.00070, P = 0.00070
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMA 326
E + E+ +R++Y N+D T +++L F++ CG V R+ +L D + A+VEF
Sbjct: 81 EGKEEVDARSVYVGNVDYACTPEEVQLHFQT-CGTVNRVTILMDKFGQPKGFAYVEFVEV 139
Query: 327 ESAIAALNCSGAVLGSLPIRLVSPSKTPV 355
E+ AL + + L ++ VSP +T V
Sbjct: 140 EAVQEALQLNESELHGRQLK-VSPKRTNV 167
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 115 (45.5 bits), Expect = 0.00072, P = 0.00072
Identities = 50/178 (28%), Positives = 84/178 (47%)
Query: 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN---SVLRFAFVEFTDEEGARAA 234
+R +YV +D +VTE+ L +F T G V+ +I D N + FVEF D A A
Sbjct: 89 KRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERA 148
Query: 235 LSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT-IYCTNIDKKVTQGDIK 293
+ T+ G R+ S+ VN + + ++ + + I+ ++ +V ++
Sbjct: 149 MQ---TLNGR---RIHQSEIR---VNWAYQSNTANKEDTSNHFHIFVGDLSNEVND-EVL 198
Query: 294 LFFESVCGEVQRLRLLGDYQHS-TR----IAFVEFAMAESAIAALNCSGAVLGSLPIR 346
L S G V R++ D + +R +AF E A AE A+ +++ G LGS IR
Sbjct: 199 LQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMD--GEWLGSRAIR 254
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 113 (44.8 bits), Expect = 0.00073, P = 0.00073
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 144 TNGHTTTRRKRNGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLF 199
+NG T+ NG S R NC +T A D + + V+ + Q +T+E+ +LF
Sbjct: 11 SNGPTSNTS--NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLF 64
Query: 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
+ G++ C++ D L + FV + D + A A++ T+ G +R L +KT
Sbjct: 65 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT--- 114
Query: 258 PVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH-- 314
+ ++ P S R+ +Y + + K +TQ +++ F S G + R+L D
Sbjct: 115 -IKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGV 169
Query: 315 STRIAFVEFAM---AESAIAALN 334
S + F+ F AE AI LN
Sbjct: 170 SRGVGFIRFDKRIEAEEAIKGLN 192
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 118 (46.6 bits), Expect = 0.00075, P = 0.00075
Identities = 42/161 (26%), Positives = 75/161 (46%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALS-LA 238
++V ++D+ + + L F G ++ C++ D + + FV + DEE A+ A+ +
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 239 GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT-IYCTNIDKKVTQGDIKLFFE 297
G LG SK V P F+ +SE T +Y N VT+ ++ F
Sbjct: 166 GVQLG--------SKNVY--VGP-FIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFN 214
Query: 298 SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL-NCSG 337
GE+ + + D ++ + F+ +A AESA A+ N +G
Sbjct: 215 PY-GEITSMIVKMDNKNR-KFCFINYADAESAKNAMDNLNG 253
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 118 (46.6 bits), Expect = 0.00075, P = 0.00075
Identities = 42/161 (26%), Positives = 75/161 (46%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALS-LA 238
++V ++D+ + + L F G ++ C++ D + + FV + DEE A+ A+ +
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 239 GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT-IYCTNIDKKVTQGDIKLFFE 297
G LG SK V P F+ +SE T +Y N VT+ ++ F
Sbjct: 166 GVQLG--------SKNVY--VGP-FIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFN 214
Query: 298 SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL-NCSG 337
GE+ + + D ++ + F+ +A AESA A+ N +G
Sbjct: 215 PY-GEITSMIVKMDNKNR-KFCFINYADAESAKNAMDNLNG 253
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 113 (44.8 bits), Expect = 0.00079, P = 0.00079
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 144 TNGHTTTRRKRNGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLF 199
+NG T+ NG S R NC +T A D + + V+ + Q +T+E+ +LF
Sbjct: 13 SNGPTSNTS--NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLF 66
Query: 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
+ G++ C++ D L + FV + D + A A++ T+ G +R L +KT
Sbjct: 67 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT--- 116
Query: 258 PVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH-- 314
+ ++ P S R+ +Y + + K +TQ +++ F S G + R+L D
Sbjct: 117 -IKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGV 171
Query: 315 STRIAFVEFAM---AESAIAALN 334
S + F+ F AE AI LN
Sbjct: 172 SRGVGFIRFDKRIEAEEAIKGLN 194
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 113 (44.8 bits), Expect = 0.00079, P = 0.00079
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 144 TNGHTTTRRKRNGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLF 199
+NG T+ NG S R NC +T A D + + V+ + Q +T+E+ +LF
Sbjct: 13 SNGPTSNTS--NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLF 66
Query: 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
+ G++ C++ D L + FV + D + A A++ T+ G +R L +KT
Sbjct: 67 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT--- 116
Query: 258 PVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH-- 314
+ ++ P S R+ +Y + + K +TQ +++ F S G + R+L D
Sbjct: 117 -IKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGV 171
Query: 315 STRIAFVEFAM---AESAIAALN 334
S + F+ F AE AI LN
Sbjct: 172 SRGVGFIRFDKRIEAEEAIKGLN 194
>TAIR|locus:2065190 [details] [associations]
symbol:AT2G47310 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:BT015132 EMBL:BT015799 EMBL:AK229352 IPI:IPI00531580
RefSeq:NP_850472.1 UniGene:At.36378 ProteinModelPortal:Q6AWW6
SMR:Q6AWW6 PRIDE:Q6AWW6 EnsemblPlants:AT2G47310.1 GeneID:819344
KEGG:ath:AT2G47310 TAIR:At2g47310 HOGENOM:HOG000084673
InParanoid:Q6AWW6 OMA:RERIGFA PhylomeDB:Q6AWW6
ProtClustDB:CLSN2918289 Genevestigator:Q6AWW6 Uniprot:Q6AWW6
Length = 512
Score = 115 (45.5 bits), Expect = 0.00080, P = 0.00080
Identities = 60/210 (28%), Positives = 93/210 (44%)
Query: 156 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 215
G S KRR T NA D I + +YV+ I + TE + +F G V + + D
Sbjct: 90 GSSLRKRRSQSATDNA--DGSIAK-LYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKM 146
Query: 216 SVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT---FLP-RSED 269
+ R + F+++ E AA++ F P +LP K A F P + D
Sbjct: 147 TGERAAYCFIKYKKVEEGNAAIAALTEQFTF-PGEMLPVKVRFAEAERERIGFAPVQLPD 205
Query: 270 EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL-LGDYQHSTRIAFVEFA---M 325
++ R C N K+ T+ ++ F S G ++ + + L D + AFV+F+ M
Sbjct: 206 NPKLYVR---CLN--KQTTKMEVNEVF-SRYGIIEDIYMALDDMKICRGYAFVQFSCKEM 259
Query: 326 AESAIAALNCSGAVLGS---LPIRLVSPSK 352
A +AI ALN + GS L +R P K
Sbjct: 260 ALAAIKALNGLFTIRGSDQPLIVRFADPKK 289
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 113 (44.8 bits), Expect = 0.00080, P = 0.00080
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 144 TNGHTTTRRKRNGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLF 199
+NG T+ NG S R NC +T A D + + V+ + Q +T+E+ +LF
Sbjct: 18 SNGPTSNTT--NGPSSNSR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLF 71
Query: 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
+ G++ C++ D L + FV + D + A A++ T+ G +R L +KT
Sbjct: 72 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT--- 121
Query: 258 PVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH-- 314
+ ++ P S R+ +Y + + K +TQ +++ F S G + R+L D
Sbjct: 122 -IKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGV 176
Query: 315 STRIAFVEFAM---AESAIAALN 334
S + F+ F AE AI LN
Sbjct: 177 SRGVGFIRFDKRIEAEEAIKGLN 199
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 113 (44.8 bits), Expect = 0.00081, P = 0.00081
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 144 TNGHTTTRRKRNGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLF 199
+NG T+ NG S R NC +T A D + + V+ + Q +T+E+ +LF
Sbjct: 6 SNGPTSNTS--NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLF 59
Query: 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
+ G++ C++ D L + FV + D + A A++ T+ G +R L +KT
Sbjct: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT--- 109
Query: 258 PVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH-- 314
+ ++ P S R+ +Y + + K +TQ +++ F S G + R+L D
Sbjct: 110 -IKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGV 164
Query: 315 STRIAFVEFAM---AESAIAALN 334
S + F+ F AE AI LN
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLN 187
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 113 (44.8 bits), Expect = 0.00081, P = 0.00081
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 144 TNGHTTTRRKRNGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLF 199
+NG T+ NG S R NC +T A D + + V+ + Q +T+E+ +LF
Sbjct: 6 SNGPTSNTS--NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLF 59
Query: 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
+ G++ C++ D L + FV + D + A A++ T+ G +R L +KT
Sbjct: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT--- 109
Query: 258 PVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH-- 314
+ ++ P S R+ +Y + + K +TQ +++ F S G + R+L D
Sbjct: 110 -IKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGV 164
Query: 315 STRIAFVEFAM---AESAIAALN 334
S + F+ F AE AI LN
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLN 187
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 116 (45.9 bits), Expect = 0.00082, P = 0.00082
Identities = 46/175 (26%), Positives = 76/175 (43%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 237
++YV D+D VT+ QL F G VV R+C D L + +V FT+ + A A+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ- 95
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297
L + P L K P+ + R R + I+ N+D+ + + F
Sbjct: 96 ---ELNYIP---LYGK----PIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFS 145
Query: 298 SVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350
S G + ++ D ++ FV++A ESA A+ +G +L + V P
Sbjct: 146 SF-GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV-YVGP 198
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 115 (45.5 bits), Expect = 0.00082, P = 0.00082
Identities = 55/216 (25%), Positives = 92/216 (42%)
Query: 156 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 215
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 69 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 128
Query: 216 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 271
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 129 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 186
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 329
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 187 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 243
Query: 330 IAALNCSGAV-LGSLPIRLVSPSKTPVRPR-APRPP 363
A++ LG +R V + TP P P P
Sbjct: 244 QDAVSSMNLFDLGGQYLR-VGKAVTPPMPLLTPATP 278
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 112 (44.5 bits), Expect = 0.00083, P = 0.00083
Identities = 46/170 (27%), Positives = 86/170 (50%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEG 230
+D++ R + V+ + Q +T+++L +LF + G+V ++ D L + FV + + +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKD 73
Query: 231 ARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQ 289
A A++ T+ G +R L SKT + +F P SE ++ +Y + + + +TQ
Sbjct: 74 AERAIN---TLNG---LR-LQSKT----IKVSFARPSSETIKDA---NLYISGLPRTMTQ 119
Query: 290 GDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMAESAIAALN 334
D++ F G + R+L D S +AF+ F + AE AIA+ N
Sbjct: 120 KDVEDMFLPF-GHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFN 168
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 112 (44.5 bits), Expect = 0.00083, P = 0.00083
Identities = 46/169 (27%), Positives = 84/169 (49%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEG 230
+D++ R + V+ + Q +T+++L +LF + G+V ++ D L + FV + + +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKD 73
Query: 231 ARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQG 290
A A++ T+ G +R L SKT V P SE ++ +Y + + + +TQ
Sbjct: 74 AERAIN---TLNG---LR-LQSKTIKVSVAR---PSSESIKDA---NLYISGLPRTMTQK 120
Query: 291 DIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMAESAIAALN 334
D++ F G + R+L D S +AF+ F + AE AIA+ N
Sbjct: 121 DVEDMFLPF-GRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFN 168
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 118 (46.6 bits), Expect = 0.00083, P = 0.00083
Identities = 49/188 (26%), Positives = 81/188 (43%)
Query: 158 SQGKRRMNCRTSNAQQDEVIRR-TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS 216
S GK +++E I T+++ +++ TEE L +F G + C I N
Sbjct: 700 STGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK 759
Query: 217 V-----LRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDE 270
+ F FVE+ E A+ AL L G + + + V S+ A P + + +
Sbjct: 760 AGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPK 819
Query: 271 REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL----LGDYQHSTRIAFVEFAMA 326
++ S+ I NI + Q +I+ F S GE++ +RL G H FV+F
Sbjct: 820 KQTTSK-ILVRNIPFQANQREIRELF-STFGELKTVRLPKKMTGTGAHRG-FGFVDFITK 876
Query: 327 ESAIAALN 334
+ A A N
Sbjct: 877 QDAKKAFN 884
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 113 (44.8 bits), Expect = 0.00084, P = 0.00084
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 144 TNGHTTTRRKRNGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLF 199
+NG T+ NG S R NC +T A D + + V+ + Q +T+E+ +LF
Sbjct: 13 SNGPTSNTS--NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLF 66
Query: 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
+ G++ C++ D L + FV + D + A A++ T+ G +R L +KT
Sbjct: 67 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT--- 116
Query: 258 PVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH-- 314
+ ++ P S R+ +Y + + K +TQ +++ F S G + R+L D
Sbjct: 117 -IKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGV 171
Query: 315 STRIAFVEFAM---AESAIAALN 334
S + F+ F AE AI LN
Sbjct: 172 SRGVGFIRFDKRIEAEEAIKGLN 194
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 115 (45.5 bits), Expect = 0.00084, P = 0.00084
Identities = 55/216 (25%), Positives = 92/216 (42%)
Query: 156 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 215
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 77 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 136
Query: 216 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 271
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 137 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 194
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 329
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 195 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 251
Query: 330 IAALNCSGAV-LGSLPIRLVSPSKTPVRPR-APRPP 363
A++ LG +R V + TP P P P
Sbjct: 252 QDAVSSMNLFDLGGQYLR-VGKAVTPPMPLLTPATP 286
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 115 (45.5 bits), Expect = 0.00084, P = 0.00084
Identities = 55/216 (25%), Positives = 92/216 (42%)
Query: 156 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 215
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 77 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 136
Query: 216 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 271
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 137 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 194
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 329
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 195 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 251
Query: 330 IAALNCSGAV-LGSLPIRLVSPSKTPVRPR-APRPP 363
A++ LG +R V + TP P P P
Sbjct: 252 QDAVSSMNLFDLGGQYLR-VGKAVTPPMPLLTPATP 286
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 113 (44.8 bits), Expect = 0.00085, P = 0.00085
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 144 TNGHTTTRRKRNGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLF 199
+NG T+ NG S R NC +T A D + + V+ + Q +T+E+ +LF
Sbjct: 29 SNGPTSNTS--NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLF 82
Query: 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
+ G++ C++ D L + FV + D + A A++ T+ G +R L +KT
Sbjct: 83 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT--- 132
Query: 258 PVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH-- 314
+ ++ P S R+ +Y + + K +TQ +++ F S G + R+L D
Sbjct: 133 -IKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGV 187
Query: 315 STRIAFVEFAM---AESAIAALN 334
S + F+ F AE AI LN
Sbjct: 188 SRGVGFIRFDKRIEAEEAIKGLN 210
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 114 (45.2 bits), Expect = 0.00085, P = 0.00085
Identities = 44/190 (23%), Positives = 85/190 (44%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALS-L 237
V+V D+ + V+ E L + F G+V + ++ D + + FV F +++ A A++ +
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE--DEREMCSRTIYCTNIDKKVTQGDIKLF 295
G +G VR + + N L + + + + ++Y NI ++ T D++
Sbjct: 287 NGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDL 346
Query: 296 FESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL-NCSGAVLGSLPIRLVSPSKTP 354
F S G++ +R+ + R AFV + E A A+ +G + +R S +T
Sbjct: 347 F-STYGDIAEVRIF----KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRC-SWGRTQ 400
Query: 355 VRPRAPRPPL 364
P PL
Sbjct: 401 AVPNQALNPL 410
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 113 (44.8 bits), Expect = 0.00085, P = 0.00085
Identities = 50/194 (25%), Positives = 85/194 (43%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA 60
Query: 233 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 290
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 291 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 345
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 346 RLVSPSKTPVRPRA 359
R ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 113 (44.8 bits), Expect = 0.00085, P = 0.00085
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 144 TNGHTTTRRKRNGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLF 199
+NG T+ NG S R NC +T A D + + V+ + Q +T+E+ +LF
Sbjct: 17 SNGPTSNTS--NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLF 70
Query: 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
+ G++ C++ D L + FV + D + A A++ T+ G +R L +KT
Sbjct: 71 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT--- 120
Query: 258 PVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH-- 314
+ ++ P S R+ +Y + + K +TQ +++ F S G + R+L D
Sbjct: 121 -IKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGV 175
Query: 315 STRIAFVEFAM---AESAIAALN 334
S + F+ F AE AI LN
Sbjct: 176 SRGVGFIRFDKRIEAEEAIKGLN 198
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 113 (44.8 bits), Expect = 0.00086, P = 0.00086
Identities = 50/194 (25%), Positives = 85/194 (43%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 233 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 290
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 291 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 345
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 346 RLVSPSKTPVRPRA 359
R ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 113 (44.8 bits), Expect = 0.00086, P = 0.00086
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 144 TNGHTTTRRKRNGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLF 199
+NG T+ NG S R NC +T A D + + V+ + Q +T+E+ +LF
Sbjct: 18 SNGPTSNTS--NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLF 71
Query: 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIA 257
+ G++ C++ D L + FV + D + A A++ T+ G +R L +KT
Sbjct: 72 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT--- 121
Query: 258 PVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH-- 314
+ ++ P S R+ +Y + + K +TQ +++ F S G + R+L D
Sbjct: 122 -IKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGV 176
Query: 315 STRIAFVEFAM---AESAIAALN 334
S + F+ F AE AI LN
Sbjct: 177 SRGVGFIRFDKRIEAEEAIKGLN 199
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 113 (44.8 bits), Expect = 0.00086, P = 0.00086
Identities = 50/194 (25%), Positives = 85/194 (43%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 233 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 290
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 291 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 345
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 346 RLVSPSKTPVRPRA 359
R ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 113 (44.8 bits), Expect = 0.00086, P = 0.00086
Identities = 50/194 (25%), Positives = 85/194 (43%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 233 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 290
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 291 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 345
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 346 RLVSPSKTPVRPRA 359
R ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 113 (44.8 bits), Expect = 0.00089, P = 0.00089
Identities = 50/194 (25%), Positives = 85/194 (43%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA 60
Query: 233 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 290
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 291 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 345
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 346 RLVSPSKTPVRPRA 359
R ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 111 (44.1 bits), Expect = 0.00089, P = 0.00089
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R+VYV ++D + T +L F CG++ + C + G P +A++EF E
Sbjct: 158 EADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKFSGHPKG---YAYIEFATES 214
Query: 230 GARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 262
A+AA+ L ++ ++VLP +T ++ T
Sbjct: 215 SAQAAVELDNSVFRGRVIKVLPKRTNFPGISST 247
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 111 (44.1 bits), Expect = 0.00089, P = 0.00089
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 229
E R++YV ++D T E+L F CG V + C + G P FA++EF D+E
Sbjct: 159 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFCDKE 215
Query: 230 GARAALSLAGTMLGFYPVRVLPSKT 254
R +L+L ++ ++V+P +T
Sbjct: 216 SVRTSLALDESLFRGRQIKVVPKRT 240
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 115 (45.5 bits), Expect = 0.00091, P = 0.00091
Identities = 55/216 (25%), Positives = 92/216 (42%)
Query: 156 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 215
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 106 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 165
Query: 216 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 271
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 166 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 223
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 329
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 224 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 280
Query: 330 IAALNCSGAV-LGSLPIRLVSPSKTPVRPR-APRPP 363
A++ LG +R V + TP P P P
Sbjct: 281 QDAVSSMNLFDLGGQYLR-VGKAVTPPMPLLTPATP 315
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 115 (45.5 bits), Expect = 0.00092, P = 0.00092
Identities = 55/216 (25%), Positives = 92/216 (42%)
Query: 156 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 215
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 111 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 170
Query: 216 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 271
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 171 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 228
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 329
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 229 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 285
Query: 330 IAALNCSGAV-LGSLPIRLVSPSKTPVRPR-APRPP 363
A++ LG +R V + TP P P P
Sbjct: 286 QDAVSSMNLFDLGGQYLR-VGKAVTPPMPLLTPATP 320
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 115 (45.5 bits), Expect = 0.00092, P = 0.00092
Identities = 55/216 (25%), Positives = 92/216 (42%)
Query: 156 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 215
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 111 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 170
Query: 216 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 271
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 171 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 228
Query: 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 329
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 229 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 285
Query: 330 IAALNCSGAV-LGSLPIRLVSPSKTPVRPR-APRPP 363
A++ LG +R V + TP P P P
Sbjct: 286 QDAVSSMNLFDLGGQYLR-VGKAVTPPMPLLTPATP 320
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 113 (44.8 bits), Expect = 0.00093, P = 0.00093
Identities = 52/191 (27%), Positives = 85/191 (44%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALS-L 237
VYV I ++ E+ + F G + + D ++ FAFVE+ E A+ AL +
Sbjct: 23 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 82
Query: 238 AGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
MLG ++V PS I P +E+ R +R IY ++ + ++ DIK F
Sbjct: 83 NSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF-NR-IYVASVHQDLSDDDIKSVF 138
Query: 297 ESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESAIAALNCSGAV-LGSLPIRLVSPSKT 353
E+ G+++ L D F+E+ A+S+ A++ LG +R V + T
Sbjct: 139 EAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR-VGKAVT 196
Query: 354 PVRPR-APRPP 363
P P P P
Sbjct: 197 PPMPLLTPATP 207
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 114 (45.2 bits), Expect = 0.00094, P = 0.00093
Identities = 52/174 (29%), Positives = 77/174 (44%)
Query: 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV-LRFAFVEFTDEEGA-RAAL 235
+R +YV +D +VTE+ L +F T G V + +I D N+ + FVE+ D A RA
Sbjct: 84 KRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQ 143
Query: 236 SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 295
+L G + +RV + A + T ED I+ ++ +V +
Sbjct: 144 TLNGRRVHQSEIRV--NWAYQAATSAT----KEDTSNHFH--IFVGDLSNEVNDEVLTQA 195
Query: 296 FESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNC-SGAVLGSLPIR 346
F SV G V R++ D + S FV F A AL+ G LGS IR
Sbjct: 196 F-SVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIR 248
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 91 (37.1 bits), Expect = 0.00095, P = 0.00095
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSL 237
RT++V +++ +VTEE L LF G V+ +I D + + FAFV F E A++L
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69
Query: 238 A-GTMLGFYPVRV 249
G L P+++
Sbjct: 70 LNGIKLYGRPIKI 82
>ASPGD|ASPL0000008076 [details] [associations]
symbol:AN6004 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 EMBL:AACD01000102 eggNOG:NOG67475
HOGENOM:HOG000163072 OrthoDB:EOG4C5GTR RefSeq:XP_663608.1
ProteinModelPortal:Q5B0C6 EnsemblFungi:CADANIAT00007014
GeneID:2871044 KEGG:ani:AN6004.2 OMA:HQLRANA Uniprot:Q5B0C6
Length = 270
Score = 110 (43.8 bits), Expect = 0.00095, P = 0.00095
Identities = 33/100 (33%), Positives = 52/100 (52%)
Query: 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC---GDPNSVLRFAFVEFTDEEGARAA 234
R TV+VS+ID +E+++ F CG++V + G+P S L+ A V F + A+ A
Sbjct: 4 RTTVHVSNIDPSTSEKEVQDFFSFCGKIVSISVTPTSGEPGS-LKSATVTFEKDAAAKTA 62
Query: 235 LSLAGTMLGFYPVRVLPSKTA--IAPVNPTFLPRSEDERE 272
L L T LG V V ++T IA + ++DE +
Sbjct: 63 LLLDQTQLGPSVVTVKAAQTLDEIAGEHSATAAEAKDENQ 102
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.132 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 365 312 0.00080 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 142
No. of states in DFA: 585 (62 KB)
Total size of DFA: 195 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.23u 0.10s 24.33t Elapsed: 00:00:01
Total cpu time: 24.25u 0.10s 24.35t Elapsed: 00:00:01
Start: Fri May 10 01:03:47 2013 End: Fri May 10 01:03:48 2013
WARNINGS ISSUED: 1