BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017846
(365 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 177 IRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235
IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+ AL
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 123
Query: 236 SLAGTMLGFYPVRVLPSKTAI 256
+ G M G P+++ S AI
Sbjct: 124 AFNGVMFGDRPLKINHSNNAI 144
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNC 335
RT+Y N++ + T D L F GEV+ +R+ GD TR AFVEFA S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 336 SGAVLGSLPIRLVSPSKTPVRP 357
+G + G P+++ + V+P
Sbjct: 126 NGVMFGDRPLKINHSNNAIVKP 147
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 177 IRRTVYVSDIDQQVT-EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235
IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 236 SLAGTMLGFYPVRVLPSKTAI 256
+ G M G P+++ S AI
Sbjct: 127 AFNGVMFGDRPLKINHSNNAI 147
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 292
AAL T LG P L + V+P+ + DE RT+Y N++ + T D
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 293 KLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRL 347
L F GEV+ +R+ GD TR AFVEFA S AL +G + G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 177 IRRTVYVSDIDQQVT-EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235
IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 236 SLAGTMLGFYPVRVLPSKTAI 256
+ G M G P+++ S AI
Sbjct: 127 AFNGVMFGDRPLKINHSNNAI 147
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 233 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 292
AAL T LG P L + V+P+ + DE RT+Y N++ + T D
Sbjct: 38 AALDPNITALGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 293 KLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRL 347
L F GEV+ +R+ GD TR AFVEFA S AL +G + G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSL 237
+T++V ++ V +EQ+ F G+VVD R + R F VEF E A+ AL L
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKALEL 508
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-------EDEREMCSRTIYCTNIDKKVTQG 290
AG L PVR+ +A + P S + + TI+ D +
Sbjct: 509 AGHDLMGRPVRL-----DLARERGAYTPGSGRDNSSFKKPAQSSGNTIFIKGFDTSLDIH 563
Query: 291 DIKLFFES---VCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNCSGAVLG 341
I+ E CGE+ R+ + DY+ S +A+++FA S A +G+ LG
Sbjct: 564 QIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYELNGSDLG 619
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 265 PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL----GDYQHSTRIAF 320
P S + S+T++ N+ V Q +K FF+ GEV +R G+++
Sbjct: 438 PASNQNQATGSKTLFVGNLPYNVEQEQVKQFFQE-AGEVVDIRFSTFEDGNFRG---FGH 493
Query: 321 VEFAMAESAIAALNCSGAVLGSLPIRL 347
VEFA AE+A AL +G L P+RL
Sbjct: 494 VEFATAEAAKKALELAGHDLMGRPVRL 520
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 13/183 (7%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEGARAALSLAG 239
+YV++ E + LF G VVD R N+ RF +V+ + A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHK 727
Query: 240 TMLG-FYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 298
+L YP++V S P+ T PRS E R +Y TNID KV + D++ FF
Sbjct: 728 KLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFRD 779
Query: 299 VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGS--LPIRLVSPSKTPVR 356
G+V+ +R+ + +V + A AL+ +G LG+ L + L P ++ +
Sbjct: 780 Y-GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSKPRESLEK 838
Query: 357 PRA 359
R
Sbjct: 839 TRV 841
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 26/184 (14%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLA 238
R +YV++ID +V E+ + T F GQV RI N F +V T + A ALS A
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 239 GTMLGFYPVRVLPS-------KTAIAPVNPTFLPRSEDERE-------------MCSRTI 278
G LG + V+ S KT ++ + L +S + E + S+++
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA-MAESAIAALNCSG 337
TN+D V + ++ FES G++ R+ L +++ A VEF + ++ A+L G
Sbjct: 877 GVTNVDGTVNEARLRSLFESY-GKLYRVVLHPEHEG----AVVEFLDIHDAGKASLALEG 931
Query: 338 AVLG 341
+G
Sbjct: 932 HEIG 935
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAE 327
E R T+ TN+ +++ ++K+FF+ CG + R+ +L D Q ++A +EF+
Sbjct: 582 EQHRNREELTVLVTNLPSDISENELKIFFKD-CGNIIRIFILEDNQKDVKVAQIEFSETS 640
Query: 328 SAIAA 332
+AA
Sbjct: 641 EVLAA 645
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAA 234
TV V+++ ++E +L F CG ++ I D ++ A +EF++ AA
Sbjct: 591 TVLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQKDVKVAQIEFSETSEVLAA 645
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 120 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 179
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV + E A A+ ML L K + + R EM + +
Sbjct: 180 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 232
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 334
Y NID+ VT+ + + FE GE+ L D + +R FV F+ ESA AA++
Sbjct: 233 YIKNIDQDVTEEEFRELFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 110 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 157
Query: 297 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 340
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 158 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 201
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 107/275 (38%), Gaps = 60/275 (21%)
Query: 133 NFIMHTDG-TANTNGHTTTRRKRNGYSQG----------KRRMNCRTSNA---------- 171
N++M+ G T R K+NGYS+G N +T N
Sbjct: 94 NYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAF 153
Query: 172 ------------QQDEVIRRTVYVSDIDQQVTEEQLATLF------LTCGQVVDCRICGD 213
+Q E TV+V D+ VT+ L F + +VV+ R G
Sbjct: 154 RLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGR 213
Query: 214 PNSVLRFAFVEFTDE-EGARAALSLAGTMLGFYPVRVLPSKT----AIAPVNPTFLPRSE 268
+ FV F DE E RA + G P+R P+ + P + +
Sbjct: 214 SKG---YGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNS 270
Query: 269 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF---AM 325
E + + TI+ +D+ VT+ D+K F GE+ +++ R FV++ A
Sbjct: 271 GESDPTNTTIFVGAVDQSVTEDDLKSVFGQF-GELVHVKIPA----GKRCGFVQYANRAC 325
Query: 326 AESAIAALNCSGAVLGSLPIRLV---SPSKTPVRP 357
AE A++ LN G LG IRL SPS +P
Sbjct: 326 AEQALSVLN--GTQLGGQSIRLSWGRSPSNKQTQP 358
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSLA 238
T+++ ++ + ++Q+ F G+V+ R+ + R F V+F E A+ AL L
Sbjct: 312 TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELH 371
Query: 239 GTMLGFYPVRVLPSKTAIAPVNPTFLPRS-------EDEREMCSRTIYCTNIDKKVTQGD 291
G L PVR+ +A + P S + + S++I+ D + +
Sbjct: 372 GCDLDGRPVRL-----DLAHERGAYTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLEESK 426
Query: 292 IKLFFE---SVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNCSGAVLG 341
I+ E + CGE+ R+ + D + S IA+++F S AL SG+ LG
Sbjct: 427 IRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLG 481
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 242 LGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG 301
L P + P+ T P P S + S T++ N+ + Q +K FF+ V G
Sbjct: 278 LAKTPKKKTPAATKSQNDEPK-TPASNQSQGTESATLFMGNLSFNLNQDQVKEFFQEV-G 335
Query: 302 EVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNCSGAVLGSLPIRL 347
EV +RL S+R V+FA +E A AL G L P+RL
Sbjct: 336 EVISVRLATHEDGSSRGFGHVQFASSEEAKKALELHGCDLDGRPVRL 382
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 179 RTVYVSDIDQQVTE----EQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGAR 232
++++V D + E E L F CG++ + D + A+++F D+
Sbjct: 411 QSIFVKGFDSSLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFS 470
Query: 233 AALSLAGTMLGFYPVRV 249
AL L+G+ LG Y + V
Sbjct: 471 KALELSGSDLGGYNLYV 487
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 123 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 182
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV + E A A+ ML L K + + R EM + +
Sbjct: 183 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 235
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 334
Y NID++VT + + FE GE+ L D + +R FV F+ +SA AA++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 297 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 340
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 204
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 132 NNFIMHTDGTANTN-----GHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDI 186
NN I H +G + GH +++ R + M +N VY+ +I
Sbjct: 194 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE---EMKANFTN----------VYIKNI 240
Query: 187 DQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
DQ+VT+E+ +F G++ + D R F FV F+ + A+AA+
Sbjct: 241 DQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAV 290
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 123 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 182
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV + E A A+ ML L K + + R EM + +
Sbjct: 183 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 235
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 334
Y NID++VT + + FE GE+ L D + +R FV F+ +SA AA++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 297 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 340
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 204
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 132 NNFIMHTDGTANTN-----GHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDI 186
NN I H +G + GH +++ R + M +N VY+ +I
Sbjct: 194 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE---EMKANFTN----------VYIKNI 240
Query: 187 DQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
DQ+VT+E+ +F G++ + D R F FV F+ + A+AA+
Sbjct: 241 DQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAV 290
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 16/177 (9%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 122 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 181
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE--DEREMCSRTI 278
FV + E A A+ ML L K + + R DE + I
Sbjct: 182 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFDEMKANFTNI 234
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 334
Y NID VT+ + + FE GE+ L D + +R FV ++ ESA AA++
Sbjct: 235 YIKNIDPDVTEEEFRKIFEQF-GEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 112 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 159
Query: 297 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 340
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 160 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 203
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 7/167 (4%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEGARAALSL 237
+T++ ++ Q+ + F G+VVD R+ D S + +EF E A+ AL +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297
G +L VR+ + P N + E + SRTIY + + +IK
Sbjct: 444 NGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQ---SRTIYVRGFSSSLGEDEIKKELR 500
Query: 298 S---VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLG 341
S CGEV R+ + D + F + AL SG+ +G
Sbjct: 501 SHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLSGSEIG 547
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL-------LGDYQHSTRIAFVEFAMAE 327
S+T++ N+ ++ + DI+ FF+ GEV +RL Y H +EFA E
Sbjct: 383 SKTLFAGNLSYQIARSDIENFFKE-AGEVVDVRLSSFDDGSFKGYGH------IEFASPE 435
Query: 328 SAIAALNCSGAVLGSLPIRL 347
A AL +G +L +RL
Sbjct: 436 EAQKALEMNGKLLLGRDVRL 455
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 168 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF 225
T+ Q E + ++YV D+D V+E L +F G V R+C D + L +A+V F
Sbjct: 24 TNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNF 83
Query: 226 TDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDK 285
D + A+ A+ L F P++ + + +P+ R+ + I+ N+
Sbjct: 84 NDHDAAKTAIE----KLNFTPIKGKLCRIMWSQRDPSL-------RKKGAGNIFIKNLHP 132
Query: 286 KVTQGDIKLFFE--SVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNCSGAVL 340
+ D K ++ SV G + ++ D ++ +V F ESA A++ +L
Sbjct: 133 DI---DNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGML 187
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-F 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D N + +
Sbjct: 132 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 191
Query: 221 AFVEF-TDEEGARAALSLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRSEDEREMCSR 276
FV + TDE ++A + G +L V V +P K + DE +
Sbjct: 192 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF---------DEMKANFT 242
Query: 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAAL 333
IY NI+ +VT + + FE G+V L D + S FV F E A A+
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKY-GDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAV 300
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 17/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF-TDEEGARAALS 236
++YV ++D VTE L LF G V R+C D L +A+V + T +G +A
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 122 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDVAIDNKALHDTF 169
Query: 297 ESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNCSGAVL 340
+ G + ++ D +++ FV + E+A A+ +L
Sbjct: 170 -AAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGML 213
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 19/180 (10%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-F 220
CR +Q+D +R+ +Y+ ++ + + L F T G ++ C++ D N V R F
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGF 168
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV F +E AR A+ ML + + ++ + R E+ ++ +
Sbjct: 169 GFVHFENESDARDAIEAVDGML-------MNDQEVYVALHVSKKDRQSKLEEVKAKFTNV 221
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEF---AMAESAIAALN 334
Y NID++ +Q + + F G++ L D + R FV F A A A+ LN
Sbjct: 222 YVKNIDQETSQEEFEELF-GKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELN 280
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEE-GARAALS 236
++YV +++ V+E L +F G V R+C D N+ L +A+V F D E G +A
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+ S IY N+ + + F
Sbjct: 99 LNYTLIKGKPCRIMWSQ------------RDPSLRKKGSGNIYIKNLHPAIDNKSLHETF 146
Query: 297 ESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNCSGAVL 340
S G + ++ D +R FV F A A+ +L
Sbjct: 147 -STFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGA-RAALSL 237
++Y D+D +VTE L LF VV R+C D N L +A++ F++ A RA +L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 298 --SVCGEVQRLRLLGDYQ-HSTRIAFVEFAMAESAIAALNCSGAVL 340
S G + ++ D S FV+F ESA AA++ +L
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGML 200
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 25/187 (13%)
Query: 162 RRMNCRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV 217
R R +Q+D +RR+ V++ ++D+ + + + F G ++ C++ D
Sbjct: 69 RNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN 128
Query: 218 LR-FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR 276
+ + FV F EE A ++ ML L K F+PR E E+E+ +
Sbjct: 129 SKGYGFVHFETEEAANTSIDKVNGML-------LNGKKVYVG---KFIPRKEREKELGEK 178
Query: 277 T-----IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR----IAFVEFAMAE 327
+Y N + +K FFE G++ +++ ++ +AF AE
Sbjct: 179 AKLFTNVYVKNFTEDFDDEKLKEFFEP-YGKITSYKVMSKEDGKSKGFGFVAFETTEAAE 237
Query: 328 SAIAALN 334
+A+ ALN
Sbjct: 238 AAVQALN 244
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 237
++YV D+ Q V E L F + G V+ R+C D L +A+V F A AL
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD- 61
Query: 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297
+ F VR P + + +P+ R ++ N+D+ + I F
Sbjct: 62 ---TMNFDLVRNKPIRIMWSQRDPSL-------RRSGVGNVFIKNLDRAIDNKAIYDTF- 110
Query: 298 SVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNCSGAVL 340
S G + ++ D + +++ FV F E+A +++ +L
Sbjct: 111 SAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGML 154
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 15/173 (8%)
Query: 171 AQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDE 228
+++D+ ++YV ++D VTE L +F G V R+C D L +A+V F ++
Sbjct: 38 SKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQ 97
Query: 229 EGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVT 288
AL L + P++ P + + +P R+ + IY N+D +
Sbjct: 98 ADGIRALE----ELNYSPIKERPCRIMWSQRDPAL-------RKTGAGNIYIKNLDPAID 146
Query: 289 QGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 340
+ F S G++ ++ D + +S FV + AESA +A+ +L
Sbjct: 147 NKALHDTF-SAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGML 198
>sp|Q9SVV9|AML3_ARATH Protein MEI2-like 3 OS=Arabidopsis thaliana GN=ML3 PE=2 SV=2
Length = 759
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 23/161 (14%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDPNSVLRFAFVEFTDEEGARAA 234
RT++V +I+ V + +L LF G + C+ G F V + D +RAA
Sbjct: 166 RTLFVRNINSNVEDSELQALFEQYGHIRTLYTACKQRG-------FVMVSYNDIRASRAA 218
Query: 235 L-SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
+ +L G +L R L +I NP+ E+++ T+ N+ V+ D++
Sbjct: 219 MRALQGKLLK---KRKLDIHFSIPKDNPS-------EKDVNQGTLVVFNLAPSVSNRDLE 268
Query: 294 LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334
F V GE++ +R + +H + F + A++A+ ALN
Sbjct: 269 NIF-GVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALN 308
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 178
Query: 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 278
FV + E A A+ ML L K + + R EM + +
Sbjct: 179 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 231
Query: 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 334
Y N+D+++++ + + FE GE+ L D + +R FV ++ +SA AA++
Sbjct: 232 YIKNLDQEISEEEFRQMFEKF-GEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 109 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 156
Query: 297 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 340
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 157 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 200
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 131 TNNFIMHTDGTANTN-----GHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSD 185
NN I H +G + GH +++ R + M +N VY+ +
Sbjct: 189 ANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE---EMKANFTN----------VYIKN 235
Query: 186 IDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
+DQ+++EE+ +F G++ + D R F FV ++ + A+AA+
Sbjct: 236 LDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAV 286
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + G V R+C D + L +A+V F + E+G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+M + ++ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 297 ESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNCSGAVL 340
S G++ ++ D + + FV F ESA AA+ +L
Sbjct: 189 -SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGML 232
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 146 GHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV 205
GH +RR+R + + +N VY+ ++D ++TE++ + LF G++
Sbjct: 241 GHHVSRRERQSKVEA---LKANFTN----------VYIKNLDTEITEQEFSDLFGQFGEI 287
Query: 206 VDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
+ D N R F FV + + E A+ A+
Sbjct: 288 TSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFT 226
++ E R++YV ++D T E+L F CG V + C + G P FA++EF+
Sbjct: 165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFS 221
Query: 227 DEEGARAALSLAGTMLGFYPVRVLPSKT 254
D+E R +L+L ++ ++V+P +T
Sbjct: 222 DKESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM 325
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 326 AESAIAALNCSGAVLGSLPIRLVSPSKT 353
ES +L ++ I+++ P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVI-PKRT 249
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 22/184 (11%)
Query: 159 QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NS 216
Q ++ S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 217 VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR 276
L +A+V F D E R A+ L + P++ + + +P+ R+ S
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSG 126
Query: 277 TIYCTNIDKKVTQGDIKLFFE--SVCGEVQRLRLLGDYQHSTR----IAFVEFAMAESAI 330
I+ N+ + D K ++ SV G++ ++ D ++ + F E A+ AI
Sbjct: 127 NIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAI 183
Query: 331 AALN 334
ALN
Sbjct: 184 DALN 187
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 167 RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEF 225
R S ++ + +YV +I+ + T+EQ LF G +V + D + L+ F FV +
Sbjct: 207 RDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNY 266
Query: 226 TDEEGARAAL 235
E A A+
Sbjct: 267 EKHEDAVKAV 276
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 172 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFT 226
++ E R++YV ++D T E+L F CG V + C + G P FA++EF+
Sbjct: 161 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFS 217
Query: 227 DEEGARAALSLAGTMLGFYPVRVLPSKT 254
D+E R +L+L ++ ++V+P +T
Sbjct: 218 DKESVRTSLALDESLFRGRQIKVIPKRT 245
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM 325
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 218
Query: 326 AESAIAALNCSGAVLGSLPIRLVSPSKT 353
ES +L ++ I+++ P +T
Sbjct: 219 KESVRTSLALDESLFRGRQIKVI-PKRT 245
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Query: 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNS--VLRFAFVEFTDE- 228
Q E T++V D+ +VT+ L+ F G V ++ D + + FV F DE
Sbjct: 148 QTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADEN 207
Query: 229 EGARAALSLAGTMLGFYPVRVLPSKTAIA-PVNPTFLPRSE----DEREMCSRTIYCTNI 283
E RA + G P+R+ P+ A P+ P ++ + + + TI+ +
Sbjct: 208 EQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGL 267
Query: 284 DKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF---AMAESAIAALNCSGAVL 340
D VT ++K F GE+ +++ R FV++ A AE A++ LN G L
Sbjct: 268 DANVTDDELKSIFGQF-GELLHVKI----PPGKRCGFVQYANKASAEHALSVLN--GTQL 320
Query: 341 GSLPIRLV---SPSK 352
G IRL SP+K
Sbjct: 321 GGQSIRLSWGRSPNK 335
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 165 NCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVE 224
N + +NA ++ T++V +D VT+++L ++F G+++ +I P R FV+
Sbjct: 246 NTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI--PPGK--RCGFVQ 301
Query: 225 FTDEEGARAALS-LAGTMLGFYPVRV 249
+ ++ A ALS L GT LG +R+
Sbjct: 302 YANKASAEHALSVLNGTQLGGQSIRL 327
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEEGARA 233
R++YV ++D T E+L F CG V + C + G P FA++EF+D+E R
Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 228
Query: 234 ALSLAGTMLGFYPVRVLPSKT 254
+L+L ++ ++V+P +T
Sbjct: 229 SLALDESLFRGRQIKVIPKRT 249
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM 325
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 326 AESAIAALNCSGAVLGSLPIRLVSPSKT 353
ES +L ++ I+++ P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVI-PKRT 249
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 220
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGY 178
Query: 221 AFVEFTDEEGARAALS-LAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRSEDEREMCSR 276
FV + E A A+ + G +L V V +P K ++ +E +
Sbjct: 179 GFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---------EEMKANFT 229
Query: 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 334
IY NID VT D + FE G++ + D Q +R FV + E+A A++
Sbjct: 230 NIYVKNIDLDVTDEDFRELFEK-HGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVD 287
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 168 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF 225
T+ AQQ ++YV ++D VTE L LF + GQV R+C D L +A+V +
Sbjct: 37 TTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 96
Query: 226 -TDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNID 284
+ E+G +A L T++ P R++ S+ +P R+ ++ N+D
Sbjct: 97 NSSEDGEKALEELNYTVIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLD 144
Query: 285 KKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 340
+ + F + G + ++ D +S FV + AE+A A+ +L
Sbjct: 145 HAIDNKALHDTF-AAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGML 200
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEEGARA 233
++VYV ++D VT E+L + F +CG V + C + G P FA++EF++
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFSEPSLVPN 111
Query: 234 ALSLAGTMLGFYPVRVLPSKTAI 256
AL L G+ML P++V P +T +
Sbjct: 112 ALLLNGSMLHERPLKVTPKRTNV 134
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 269 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMA 326
D+ + ++++Y N+D VT +++ F S CG V R+ +L D H A++EF+
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFAS-CGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
Query: 327 ESAIAALNCSGAVLGSLPIRLVSPSKTPV 355
AL +G++L P++ V+P +T V
Sbjct: 107 SLVPNALLLNGSMLHERPLK-VTPKRTNV 134
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 297 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 340
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGML 207
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAAL 235
VYV +IDQ TEE+ LF G++ + D S F FV FT + A AA+
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 183 VSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF--AFVEFTDEEGARAAL-SLAG 239
V+ + Q +T+ +L LF TCG + CRI D + F AFV+F E A+ A+ SL G
Sbjct: 89 VNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNG 148
Query: 240 TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESV 299
VR K + A P E ++ +Y TN+ + +T +++ F
Sbjct: 149 VT-----VRNKRLKVSYA------RPGGESIKDT---NLYVTNLPRTITDDELEKIFGKY 194
Query: 300 CGEVQRLRLLGDYQHSTR-IAFVEF---AMAESAIAALN 334
VQ+ L R +AFV F A+ AI+ALN
Sbjct: 195 GNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 233
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 155 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-----R 209
NG + +R+ + + + +YV+++ + +T+++L +F G +V +
Sbjct: 147 NGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDK 206
Query: 210 ICGDPNSVLRFAFVEFTDEEGARAALS 236
+ G P V AFV F E A+ A+S
Sbjct: 207 LTGKPRGV---AFVRFNKREEAQEAIS 230
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 162
Query: 297 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 340
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 163 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 206
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
VY+ ++D ++ +++ +F G++ + D R F FV F+ E A+AA+
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 292
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 31/178 (17%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 237
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 238 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 295
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 M-NMIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 296 FES-----VCGEVQRLRLLGDYQHSTRIAFVEFA---MAESAIAALNCSGAVLGSLPI 345
+++ V + ++ D +S AF+ FA +++AI A+N G L + PI
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN--GQYLCNRPI 172
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEEGARA 233
R++YV ++D T E+L F CG V + C + G P FA++EF+D+E R
Sbjct: 162 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFSDKESVRT 218
Query: 234 ALSLAGTMLGFYPVRVLPSKT 254
+L+L ++ ++V+P +T
Sbjct: 219 SLALDESLFRGRQIKVVPKRT 239
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM 325
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 154 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEFSD 212
Query: 326 AESAIAALNCSGAVLGSLPIRLVSPSKT 353
ES +L ++ I++V P +T
Sbjct: 213 KESVRTSLALDESLFRGRQIKVV-PKRT 239
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 236
++YV ++D VTE L LF + GQV R+C D L +A+V + D G RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 297 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 340
+ G + ++ D + S FV + AE+A A+ +L
Sbjct: 151 -AAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGML 194
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 19/110 (17%)
Query: 132 NNFIMHTDGTANTN-----GHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDI 186
NN I H +G + GH +++ R + M +N +Y+ +I
Sbjct: 184 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE---EMKANFTN----------IYIKNI 230
Query: 187 DQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
D +V +E+ LF G++ + D R F FV F+ E A+AA+
Sbjct: 231 DPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTD-EEGARAALS 236
++YV D+D VT+ QL F G VV R+C D L + +V FT+ ++ ARA
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
L L P+RV+ S R R + I+ N+D+ + + F
Sbjct: 97 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 297 ESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVL 340
S V + S FV++A ESA A+ +L
Sbjct: 145 SSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGML 188
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 24/181 (13%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-F 220
R + +D +RR+ +++ ++D+ + + L F + G +V C++ D + + +
Sbjct: 107 IRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGY 166
Query: 221 AFVEFTDEEGARAAL-SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT-- 277
FV++ +EE A+ A+ L G +L V V P FL R E + ++T
Sbjct: 167 GFVQYANEESAQKAIEKLNGMLLNDKQVYVGP-----------FLRRQERD-STANKTKF 214
Query: 278 --IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 334
+Y N+ + T D+K F G++ ++ D + ++ FV F A+ A A+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGE-YGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVE 273
Query: 335 C 335
Sbjct: 274 S 274
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 126 NGFGYTN--NFIMHTDGTANTNGHTTTRRKRN-GYSQGK--RRMNCRTSNAQQ-----DE 175
GFG+ N N + NGH ++ G +Q K R R Q D+
Sbjct: 255 KGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADK 314
Query: 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA-FVEF-TDEEGARA 233
+YV ++D +++E+L +F G V ++ DPN + + FV F T EE A
Sbjct: 315 FQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEA 374
Query: 234 ALSLAGTMLGFYPVRV 249
L+G M+ P+ V
Sbjct: 375 MSQLSGKMIESKPLYV 390
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 31/178 (17%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 237
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 238 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 295
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 M-NMIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 296 FES-----VCGEVQRLRLLGDYQHSTRIAFVEFA---MAESAIAALNCSGAVLGSLPI 345
+++ V + ++ D +S AF+ FA +++AI A+N G L + PI
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN--GQYLCNRPI 172
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 31/178 (17%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 237
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 238 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 295
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 M-NMIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 296 FES-----VCGEVQRLRLLGDYQHSTRIAFVEFA---MAESAIAALNCSGAVLGSLPI 345
+++ V + ++ D +S AF+ FA +++AI A+N G L + PI
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN--GQYLCNRPI 172
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEEGARA 233
R++YV ++D T E+L F CG V + C + G P FA++EF+D+E R
Sbjct: 163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYIEFSDKESVRT 219
Query: 234 ALSLAGTMLGFYPVRVLPSKT 254
+L+L ++ ++V+P +T
Sbjct: 220 SLALDESLFRGRQIKVVPKRT 240
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM 325
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKYTGHPKGFAYIEFSD 213
Query: 326 AESAIAALNCSGAVLGSLPIRLVSPSKT 353
ES +L ++ I++V P +T
Sbjct: 214 KESVRTSLALDESLFRGRQIKVV-PKRT 240
>sp|Q8VWF5|AML5_ARATH Protein MEI2-like 5 OS=Arabidopsis thaliana GN=ML5 PE=1 SV=1
Length = 800
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 23/161 (14%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDPNSVLRFAFVEFTDEEGARAA 234
RT++V +I+ V + +L LF G + C+ G F + + D AR A
Sbjct: 168 RTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRG-------FVMISYYDIRSARMA 220
Query: 235 L-SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
+ SL L R L +I NP+ E++M T+ N+D ++ D+
Sbjct: 221 MRSLQNKPLR---RRKLDIHFSIPKDNPS-------EKDMNQGTLVVFNLDPSISNDDLH 270
Query: 294 LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334
F GE++ +R +H + F + AE+A+ ALN
Sbjct: 271 GIF-GAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALN 310
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV-----LRFAFVEFTDEEGARAA 234
T+++ +++ TEE+L +F G V C I N + F FVE+ E A+ A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 235 LS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
L L G ++ + + V S+ A P T + + R+ + I NI + +I+
Sbjct: 791 LKQLQGHVVDGHKLEVRISERATKPAV-TLARKKQVPRKQTTSKILVRNIPFQAHSREIR 849
Query: 294 LFFESVCGEVQRLRL----LGDYQHSTRIAFVEFAMAESAIAALNC 335
F S GE++ +RL G H FV+F + A A N
Sbjct: 850 ELF-STFGELKTVRLPKKMTGTGTHRG-FGFVDFLTKQDAKRAFNA 893
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 269 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 326
D+ E+ SR++Y N+D K T I +F+S CG V R+ +L D H +VEF
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQS-CGTVNRITILSDKTTGHPKGCCYVEFVNK 152
Query: 327 ESAIAALNCSGAVLGSLPIRLVSPSKTPVRPRAP 360
ES I A+ + + +++ TP R P
Sbjct: 153 ESIINAMALNDSFFNERQLKI-----TPKRTNLP 181
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 170 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV-----VDCRICGDPNSVLRFAFVE 224
N Q+E+ R+VYV ++D + T +Q+ F +CG V + + G P +VE
Sbjct: 92 NTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGC---CYVE 148
Query: 225 FTDEEGARAALSLAGTMLGFYPVRVLPSKTAI 256
F ++E A++L + +++ P +T +
Sbjct: 149 FVNKESIINAMALNDSFFNERQLKITPKRTNL 180
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 183 VSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF--AFVEFTDEEGARAALSLAGT 240
V+ + Q +T+ +L LF TCG + CRI D + F AFV+F E A+ A+
Sbjct: 106 VNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNG 165
Query: 241 MLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVC 300
+ VR K + A P E ++ +Y TN+ + +T +++ F
Sbjct: 166 IT----VRNKRLKVSYA------RPGGESIKDT---NLYVTNLPRTITDDELEKIFGKYG 212
Query: 301 GEVQRLRLLGDYQHSTR-IAFVEF---AMAESAIAALN 334
VQ+ L R +AFV F A+ AI+ALN
Sbjct: 213 NIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALN 250
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 155 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-----R 209
NG + +R+ + + + +YV+++ + +T+++L +F G +V +
Sbjct: 164 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDK 223
Query: 210 ICGDPNSVLRFAFVEFTDEEGARAALS 236
+ G P V AFV F E A+ A+S
Sbjct: 224 LTGRPRGV---AFVRFNKREEAQEAIS 247
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 150 TRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR 209
T RK NGY Q M T + +++ T++V +D VT+E L F G++V +
Sbjct: 275 TPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVK 334
Query: 210 I-----CGDPNSVLRFAFVEFTDEEGARAAL-SLAGTMLGFYPVRV 249
I CG FV+F + A AL L GT++G VR+
Sbjct: 335 IPVGKGCG---------FVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 24/220 (10%)
Query: 139 DGTANTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATL 198
+GT N R +S G++R+ + +++V D+ V++ L
Sbjct: 165 NGTTMPNTDQPFRLNWASFSTGEKRLENNGPDL--------SIFVGDLSPDVSDNLLHET 216
Query: 199 FL-TCGQVVDCRICGDPNS--VLRFAFVEFTDE-EGARAALSLAGTMLGFYPVRV---LP 251
F V ++ D N+ + FV F DE E +A + G +R+ P
Sbjct: 217 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 276
Query: 252 SKTAIAPVNPTFLPR---SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL 308
KT ++P + E ++ + TI+ +D VT D+K F GE+ +++
Sbjct: 277 RKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEF-GEIVSVKI 335
Query: 309 -LGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRL 347
+G + + FV AE A+ LN G V+G +RL
Sbjct: 336 PVG--KGCGFVQFVNRPNAEEALEKLN--GTVIGKQTVRL 371
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD-PNSVLRFAFVEFTDEEGARAALSLA 238
++YV D+D V E L LF V + R+C D + L +A+V F + E A A+
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME-- 117
Query: 239 GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE- 297
L + P+R P + ++ +P+ R ++ N+D + D K +E
Sbjct: 118 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASI---DNKALYET 165
Query: 298 -SVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 340
S G + ++ D S FV+F E+A AA++ +L
Sbjct: 166 FSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGML 210
>sp|Q6ZI17|OML2_ORYSJ Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2
SV=1
Length = 848
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLA 238
RT++V +I+ V + +L +LF G D R F + + D AR A+
Sbjct: 197 RTLFVRNINSNVDDTELRSLFEQYG---DIRTLYTATKHRGFVMISYFDIRAARGAMR-- 251
Query: 239 GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 298
G R L +I NP+ ++++ T+ N+D V+ +++ F
Sbjct: 252 GLQNKPLRRRKLDIHFSIPKENPS-------DKDLNQGTLVIFNLDPSVSNEEVRQIF-G 303
Query: 299 VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCS 336
GEV+ +R + +H I F + AE+A+ +LN S
Sbjct: 304 TYGEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKS 341
>sp|Q9SJG8|AML2_ARATH Protein MEI2-like 2 OS=Arabidopsis thaliana GN=ML2 PE=2 SV=2
Length = 843
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 179 RTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDPNSVLRFAFVEFTDEEGARAA 234
RT++V +I+ V + +L+ LF G++ C+ G F + + D A AA
Sbjct: 198 RTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRG-------FVMISYYDIRAAHAA 250
Query: 235 L-SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
+ +L T+L R L +I NP+ E++M T+ N+D V+ ++
Sbjct: 251 MRALQNTLLR---KRTLDIHFSIPKENPS-------EKDMNQGTLVIFNVDTTVSNDELL 300
Query: 294 LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCS 336
F GE++ +R + + I + + AE+A+ ALN S
Sbjct: 301 QLF-GAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRS 342
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAAL-S 236
++YV D+ Q VTE L F G ++ R+C D L +A+V F A AL +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 237 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 296
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 297 E--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVL 340
+ S G + +++ D S FV F E+A A++ +L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGML 162
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 21/179 (11%)
Query: 166 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA 221
R +Q+D +R++ +++ ++D+ + + L F G ++ C++ D N +
Sbjct: 82 VRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYG 141
Query: 222 FVEFTDEEGA-RAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT--- 277
FV F +E A RA + G +L V V F R E E E+ +R
Sbjct: 142 FVHFETQEAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEF 190
Query: 278 --IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334
+Y N + +K F + + D S FV F E A A++
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 126 NGFGYTNNFIMHTDGTA--------NTNGHTTTRRKRNGYSQGKRRMNCRTSNAQQDEVI 177
GFG+ + F H D + NG + + + + + + +QD +
Sbjct: 231 KGFGFVS-FERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 178 RRT---VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD-EEGARA 233
R +YV ++D + +E+L FL G + ++ + F FV F+ EE +A
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349
Query: 234 ALSLAGTMLGFYPVRV 249
+ G ++ P+ V
Sbjct: 350 VTEMNGRIVATKPLYV 365
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 169 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFV 223
S ++ E R++YV ++D T E+L F CG V + C + G P FA++
Sbjct: 153 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 209
Query: 224 EFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254
EF D+E R +L+L ++ ++V+P +T
Sbjct: 210 EFCDKESVRTSLALDESLFRGRQIKVVPKRT 240
Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 268 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM 325
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEFCD 213
Query: 326 AESAIAALNCSGAVLGSLPIRLVSPSKT 353
ES +L ++ I++V P +T
Sbjct: 214 KESVRTSLALDESLFRGRQIKVV-PKRT 240
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 150 TRRKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR 209
T RK NGY Q M + + I T++V +D VT+E L F G++V +
Sbjct: 277 TPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVK 336
Query: 210 I-----CGDPNSVLRFAFVEFTDEEGARAAL-SLAGTMLGFYPVRV 249
I CG FV+F + A AL L GT++G VR+
Sbjct: 337 IPVGKGCG---------FVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 16/179 (8%)
Query: 180 TVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDPNSVLR--FAFVEFTDE-EGARAAL 235
+++V D+ V++ L F V ++ D N+ + FV F DE E +A
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 236 SLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPR---SEDEREMCSRTIYCTNIDKKVTQ 289
+ G +R+ P KT ++P + E + + TI+ +D VT
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 290 GDIKLFFESVCGEVQRLRL-LGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRL 347
D+K F S GE+ +++ +G + + FV AE A+ LN G V+G +RL
Sbjct: 320 EDLKQPF-SEFGEIVSVKIPVG--KGCGFVQFVNRPNAEEALEKLN--GTVIGKQTVRL 373
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV-----LRFAFVEFTDEEGARAA 234
T+++ +++ TEE L +F G + C I N + F FVE+ E A+ A
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782
Query: 235 LS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 293
L L G + + + V S+ A P + + +++ S+ I NI + Q +I+
Sbjct: 783 LKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSK-ILVRNIPFQANQREIR 841
Query: 294 LFFESVCGEVQRLRL----LGDYQHSTRIAFVEFAMAESAIAALNC 335
F S GE++ +RL G H FV+F + A A N
Sbjct: 842 ELF-STFGELKTVRLPKKMTGTGAHRG-FGFVDFITKQDAKKAFNA 885
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 235
+ V ++ + EE+ LF G + DC + + R F F+ F EE A+AAL
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAAL 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,857,983
Number of Sequences: 539616
Number of extensions: 5989539
Number of successful extensions: 37961
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 387
Number of HSP's that attempted gapping in prelim test: 31397
Number of HSP's gapped (non-prelim): 5316
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)