Query 017846
Match_columns 365
No_of_seqs 375 out of 2569
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:56:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.4E-43 5.1E-48 341.0 26.4 257 76-354 5-349 (352)
2 KOG0145 RNA-binding protein EL 100.0 2.2E-40 4.8E-45 290.3 20.1 253 79-353 46-357 (360)
3 KOG0117 Heterogeneous nuclear 100.0 3.4E-40 7.4E-45 308.2 19.8 276 41-362 52-339 (506)
4 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-39 2.7E-44 333.6 24.5 246 77-355 3-262 (562)
5 TIGR01648 hnRNP-R-Q heterogene 100.0 3.7E-38 8.1E-43 315.6 25.7 271 41-357 27-310 (578)
6 TIGR01628 PABP-1234 polyadenyl 100.0 2.5E-37 5.3E-42 316.6 24.7 256 76-354 90-364 (562)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.7E-35 1E-39 293.7 26.9 244 76-354 4-351 (481)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.1E-34 4.6E-39 289.0 26.6 251 76-354 98-480 (481)
9 TIGR01622 SF-CC1 splicing fact 100.0 1.5E-34 3.2E-39 289.1 24.9 256 74-353 89-447 (457)
10 KOG0144 RNA-binding protein CU 100.0 4.1E-35 8.8E-40 273.0 15.1 268 70-358 30-508 (510)
11 KOG0123 Polyadenylate-binding 100.0 3.4E-34 7.4E-39 275.2 18.8 233 84-353 8-245 (369)
12 KOG0148 Apoptosis-promoting RN 100.0 1.9E-33 4.2E-38 248.0 19.6 232 72-359 4-243 (321)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.7E-33 1.7E-37 280.3 25.6 250 74-352 175-500 (509)
14 KOG0127 Nucleolar protein fibr 100.0 4.6E-33 9.9E-38 265.8 21.7 254 76-353 7-377 (678)
15 TIGR01645 half-pint poly-U bin 100.0 3.1E-33 6.7E-38 280.6 21.1 158 74-253 107-282 (612)
16 TIGR01659 sex-lethal sex-letha 100.0 5.6E-31 1.2E-35 251.7 21.8 170 173-358 102-279 (346)
17 TIGR01645 half-pint poly-U bin 100.0 1E-29 2.2E-34 255.4 22.4 177 177-358 106-288 (612)
18 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-28 3.5E-33 237.4 21.6 163 177-355 2-172 (352)
19 TIGR01622 SF-CC1 splicing fact 100.0 8.8E-28 1.9E-32 240.2 22.7 175 175-353 86-265 (457)
20 TIGR01659 sex-lethal sex-letha 100.0 3.1E-28 6.7E-33 232.8 17.0 161 73-255 106-275 (346)
21 KOG0123 Polyadenylate-binding 100.0 2.5E-28 5.5E-33 234.6 14.2 257 77-357 79-352 (369)
22 KOG0148 Apoptosis-promoting RN 99.9 2.2E-27 4.7E-32 209.8 13.7 159 74-257 62-240 (321)
23 KOG0144 RNA-binding protein CU 99.9 2.1E-27 4.6E-32 221.7 13.2 169 174-357 30-209 (510)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.3E-25 1.4E-29 222.5 22.8 175 174-354 171-375 (509)
25 KOG0124 Polypyrimidine tract-b 99.9 3.8E-25 8.3E-30 202.6 18.1 252 75-350 114-531 (544)
26 TIGR01648 hnRNP-R-Q heterogene 99.9 4E-25 8.6E-30 222.0 19.4 161 174-355 54-223 (578)
27 KOG0110 RNA-binding protein (R 99.9 3E-25 6.4E-30 218.7 18.0 246 76-354 387-693 (725)
28 KOG0131 Splicing factor 3b, su 99.9 8.6E-26 1.9E-30 189.2 11.3 168 176-358 7-181 (203)
29 KOG0145 RNA-binding protein EL 99.9 2.7E-25 5.9E-30 195.4 12.9 169 175-359 38-214 (360)
30 KOG0117 Heterogeneous nuclear 99.9 6.6E-24 1.4E-28 199.2 18.4 162 175-357 80-251 (506)
31 KOG0127 Nucleolar protein fibr 99.9 5.6E-24 1.2E-28 203.8 16.5 174 179-354 6-196 (678)
32 KOG0109 RNA-binding protein LA 99.9 1.6E-24 3.5E-29 193.5 11.3 151 179-359 3-155 (346)
33 KOG0147 Transcriptional coacti 99.9 1.7E-23 3.8E-28 201.4 14.7 243 83-350 188-524 (549)
34 KOG0124 Polypyrimidine tract-b 99.9 1.8E-23 3.9E-28 191.7 12.0 177 177-358 112-294 (544)
35 KOG0146 RNA-binding protein ET 99.9 1.3E-23 2.9E-28 185.5 10.3 192 166-359 7-370 (371)
36 KOG4205 RNA-binding protein mu 99.9 2.1E-23 4.5E-28 194.3 10.7 161 74-254 6-175 (311)
37 KOG0131 Splicing factor 3b, su 99.9 3.1E-22 6.8E-27 167.8 7.7 157 76-254 11-176 (203)
38 KOG4205 RNA-binding protein mu 99.8 3.3E-20 7.1E-25 173.0 11.5 172 177-358 5-180 (311)
39 KOG0147 Transcriptional coacti 99.8 5.1E-21 1.1E-25 184.5 6.0 176 174-352 175-356 (549)
40 KOG0109 RNA-binding protein LA 99.8 5.1E-20 1.1E-24 164.8 9.7 146 75-256 3-151 (346)
41 KOG0105 Alternative splicing f 99.8 5.5E-19 1.2E-23 148.6 14.8 157 177-340 5-175 (241)
42 KOG4212 RNA-binding protein hn 99.8 1.5E-17 3.3E-22 156.0 19.3 159 72-251 42-290 (608)
43 KOG4211 Splicing factor hnRNP- 99.8 1.7E-17 3.8E-22 158.3 15.6 246 77-346 13-351 (510)
44 KOG4206 Spliceosomal protein s 99.7 6.6E-17 1.4E-21 141.0 16.4 170 177-352 8-220 (221)
45 KOG1190 Polypyrimidine tract-b 99.7 3.7E-16 8.1E-21 145.8 16.7 169 178-354 297-491 (492)
46 KOG0110 RNA-binding protein (R 99.7 2.2E-17 4.8E-22 163.5 9.1 161 77-254 518-692 (725)
47 PLN03134 glycine-rich RNA-bind 99.7 4.8E-16 1E-20 131.0 12.2 80 176-255 32-114 (144)
48 KOG4212 RNA-binding protein hn 99.7 1.5E-15 3.3E-20 142.7 16.1 179 176-356 42-296 (608)
49 KOG0146 RNA-binding protein ET 99.7 2.5E-16 5.3E-21 139.6 10.2 77 177-253 284-363 (371)
50 KOG4211 Splicing factor hnRNP- 99.7 1.7E-15 3.6E-20 144.8 16.2 168 177-350 9-178 (510)
51 KOG0106 Alternative splicing f 99.7 2E-16 4.3E-21 139.3 7.9 156 179-348 2-165 (216)
52 KOG1190 Polypyrimidine tract-b 99.7 6E-15 1.3E-19 137.8 17.8 245 76-356 30-375 (492)
53 KOG1457 RNA binding protein (c 99.6 3.7E-15 8.1E-20 129.1 14.2 163 175-340 31-273 (284)
54 PLN03134 glycine-rich RNA-bind 99.6 1.9E-15 4.2E-20 127.3 11.8 80 274-355 33-115 (144)
55 KOG1548 Transcription elongati 99.6 1.6E-14 3.4E-19 132.6 17.3 173 174-350 130-348 (382)
56 PF00076 RRM_1: RNA recognitio 99.6 5.8E-15 1.2E-19 108.2 9.5 68 181-248 1-70 (70)
57 KOG0120 Splicing factor U2AF, 99.6 1.7E-14 3.6E-19 141.3 14.3 249 76-351 177-489 (500)
58 PLN03120 nucleic acid binding 99.6 2.4E-14 5.2E-19 129.4 11.6 78 177-255 3-80 (260)
59 COG0724 RNA-binding proteins ( 99.6 9.7E-14 2.1E-18 127.6 15.0 156 178-334 115-285 (306)
60 PF00076 RRM_1: RNA recognitio 99.5 5.3E-14 1.1E-18 103.1 9.7 68 278-346 1-70 (70)
61 KOG1456 Heterogeneous nuclear 99.5 5.1E-12 1.1E-16 117.1 22.7 251 78-357 35-366 (494)
62 KOG0125 Ataxin 2-binding prote 99.5 6.4E-14 1.4E-18 127.8 9.8 81 174-254 92-173 (376)
63 PLN03120 nucleic acid binding 99.5 1.9E-13 4.2E-18 123.5 11.5 79 274-355 3-81 (260)
64 KOG0149 Predicted RNA-binding 99.5 5.6E-14 1.2E-18 123.1 7.3 78 177-254 11-90 (247)
65 KOG0122 Translation initiation 99.5 1E-13 2.3E-18 121.8 8.7 79 274-354 188-269 (270)
66 KOG1365 RNA-binding protein Fu 99.5 2E-13 4.4E-18 126.6 11.1 248 80-350 66-358 (508)
67 PF14259 RRM_6: RNA recognitio 99.5 2.9E-13 6.2E-18 99.6 9.2 68 181-248 1-70 (70)
68 PLN03121 nucleic acid binding 99.5 4.7E-13 1E-17 119.2 11.4 78 177-255 4-81 (243)
69 KOG1456 Heterogeneous nuclear 99.5 7.6E-12 1.7E-16 116.0 19.6 160 179-342 288-474 (494)
70 KOG0122 Translation initiation 99.5 2.6E-13 5.7E-18 119.3 9.3 79 176-254 187-268 (270)
71 KOG0125 Ataxin 2-binding prote 99.4 3.2E-13 6.9E-18 123.3 9.3 84 273-358 94-178 (376)
72 KOG0107 Alternative splicing f 99.4 3.1E-13 6.7E-18 113.3 8.4 75 177-254 9-84 (195)
73 KOG0121 Nuclear cap-binding pr 99.4 2.4E-13 5.3E-18 108.2 7.1 78 175-252 33-113 (153)
74 PF14259 RRM_6: RNA recognitio 99.4 1E-12 2.2E-17 96.7 9.7 68 278-346 1-70 (70)
75 PLN03213 repressor of silencin 99.4 5.1E-13 1.1E-17 127.6 9.9 77 176-254 8-87 (759)
76 smart00362 RRM_2 RNA recogniti 99.4 1.5E-12 3.3E-17 94.7 9.8 71 180-250 1-72 (72)
77 KOG0114 Predicted RNA-binding 99.4 3.4E-12 7.4E-17 98.0 9.3 79 174-253 14-93 (124)
78 PLN03121 nucleic acid binding 99.4 4E-12 8.7E-17 113.3 11.0 76 274-352 4-79 (243)
79 KOG0126 Predicted RNA-binding 99.4 1E-13 2.3E-18 116.7 0.4 79 176-254 33-114 (219)
80 KOG0129 Predicted RNA-binding 99.4 1.5E-11 3.2E-16 118.8 15.1 156 174-334 255-431 (520)
81 smart00362 RRM_2 RNA recogniti 99.4 6E-12 1.3E-16 91.5 9.7 71 277-349 1-72 (72)
82 PLN03213 repressor of silencin 99.3 4.2E-12 9.2E-17 121.4 9.3 79 272-354 7-88 (759)
83 KOG4207 Predicted splicing fac 99.3 2.6E-12 5.5E-17 110.4 6.8 79 177-255 12-93 (256)
84 KOG0111 Cyclophilin-type pepti 99.3 1.8E-12 3.8E-17 112.3 5.4 83 175-257 7-92 (298)
85 KOG0105 Alternative splicing f 99.3 2E-11 4.4E-16 103.2 11.1 138 76-243 8-176 (241)
86 KOG0113 U1 small nuclear ribon 99.3 9.1E-12 2E-16 112.6 9.0 78 176-253 99-179 (335)
87 KOG0149 Predicted RNA-binding 99.3 8.2E-12 1.8E-16 109.6 8.4 84 274-359 11-96 (247)
88 KOG0114 Predicted RNA-binding 99.3 1.6E-11 3.5E-16 94.3 8.4 76 274-352 17-93 (124)
89 KOG0111 Cyclophilin-type pepti 99.3 3.1E-12 6.7E-17 110.8 4.8 83 275-359 10-95 (298)
90 KOG0121 Nuclear cap-binding pr 99.3 8.6E-12 1.9E-16 99.4 6.9 78 272-351 33-113 (153)
91 cd00590 RRM RRM (RNA recogniti 99.3 4E-11 8.6E-16 87.6 10.1 72 180-251 1-74 (74)
92 smart00360 RRM RNA recognition 99.3 2.3E-11 5E-16 88.0 8.5 68 183-250 1-71 (71)
93 KOG0107 Alternative splicing f 99.3 9.8E-12 2.1E-16 104.4 7.2 76 275-355 10-86 (195)
94 KOG4206 Spliceosomal protein s 99.2 7.1E-11 1.5E-15 103.4 11.7 137 89-253 28-220 (221)
95 KOG0126 Predicted RNA-binding 99.2 1.1E-12 2.3E-17 110.6 0.2 77 274-352 34-113 (219)
96 smart00360 RRM RNA recognition 99.2 4.7E-11 1E-15 86.4 8.7 68 280-349 1-71 (71)
97 KOG0106 Alternative splicing f 99.2 1.1E-11 2.4E-16 109.4 6.1 143 76-251 3-167 (216)
98 cd00590 RRM RRM (RNA recogniti 99.2 1.2E-10 2.5E-15 85.1 10.1 72 277-350 1-74 (74)
99 PF13893 RRM_5: RNA recognitio 99.2 7.6E-11 1.7E-15 82.8 8.1 55 195-252 1-56 (56)
100 KOG4207 Predicted splicing fac 99.2 2.2E-11 4.8E-16 104.7 6.4 78 274-353 12-92 (256)
101 KOG0108 mRNA cleavage and poly 99.2 4.3E-11 9.3E-16 116.8 8.1 76 179-254 19-97 (435)
102 PF13893 RRM_5: RNA recognitio 99.2 1E-10 2.2E-15 82.2 7.9 55 292-351 1-56 (56)
103 KOG0130 RNA-binding protein RB 99.2 4.2E-11 9E-16 96.3 6.3 81 272-354 69-152 (170)
104 KOG0113 U1 small nuclear ribon 99.2 9.2E-11 2E-15 106.1 9.1 79 272-352 98-179 (335)
105 KOG0130 RNA-binding protein RB 99.2 4.3E-11 9.4E-16 96.2 5.9 74 180-253 74-150 (170)
106 KOG0128 RNA-binding protein SA 99.2 5.7E-12 1.2E-16 127.7 1.0 217 90-357 588-818 (881)
107 smart00361 RRM_1 RNA recogniti 99.2 2E-10 4.4E-15 84.6 8.4 58 192-249 2-69 (70)
108 COG0724 RNA-binding proteins ( 99.1 2.3E-10 5E-15 105.0 10.7 77 275-353 115-194 (306)
109 smart00361 RRM_1 RNA recogniti 99.1 3.6E-10 7.7E-15 83.3 8.2 58 289-348 2-69 (70)
110 KOG0120 Splicing factor U2AF, 99.1 3.1E-10 6.8E-15 111.5 8.0 172 177-354 174-369 (500)
111 KOG0129 Predicted RNA-binding 99.1 1.5E-09 3.1E-14 105.2 11.9 150 74-237 259-432 (520)
112 KOG0108 mRNA cleavage and poly 99.0 3.9E-10 8.5E-15 110.1 7.9 79 276-356 19-100 (435)
113 KOG0153 Predicted RNA-binding 99.0 1.6E-09 3.4E-14 100.1 8.3 76 175-254 225-302 (377)
114 KOG4454 RNA binding protein (R 99.0 1.3E-10 2.9E-15 100.8 0.8 148 175-346 6-156 (267)
115 KOG1457 RNA binding protein (c 99.0 3.2E-09 6.9E-14 92.6 9.2 155 69-243 29-274 (284)
116 KOG0112 Large RNA-binding prot 98.9 1.2E-09 2.6E-14 111.6 4.6 161 176-358 370-535 (975)
117 KOG0226 RNA-binding proteins [ 98.9 1.9E-09 4.1E-14 95.7 4.9 160 180-349 98-265 (290)
118 KOG0132 RNA polymerase II C-te 98.8 9E-09 2E-13 103.7 8.1 74 177-254 420-494 (894)
119 KOG0153 Predicted RNA-binding 98.8 1.2E-08 2.6E-13 94.3 8.3 76 272-353 225-302 (377)
120 KOG4210 Nuclear localization s 98.8 8.1E-09 1.8E-13 96.4 6.2 172 177-354 87-264 (285)
121 KOG0132 RNA polymerase II C-te 98.8 1.7E-08 3.7E-13 101.8 7.6 78 272-355 418-496 (894)
122 KOG0415 Predicted peptidyl pro 98.7 1.5E-08 3.3E-13 93.8 6.4 78 177-254 238-318 (479)
123 KOG0415 Predicted peptidyl pro 98.7 1.6E-08 3.4E-13 93.7 6.1 82 272-355 236-320 (479)
124 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.2E-08 7E-13 96.5 8.4 81 176-256 403-486 (940)
125 KOG4208 Nucleolar RNA-binding 98.7 5.8E-08 1.3E-12 84.0 8.0 79 175-253 46-128 (214)
126 KOG4208 Nucleolar RNA-binding 98.7 4.3E-08 9.4E-13 84.8 7.0 80 273-353 47-129 (214)
127 KOG0226 RNA-binding proteins [ 98.7 2.5E-08 5.3E-13 88.7 5.3 141 91-253 116-268 (290)
128 KOG1548 Transcription elongati 98.6 5.6E-07 1.2E-11 83.4 13.1 154 74-252 134-349 (382)
129 KOG4210 Nuclear localization s 98.6 3.1E-08 6.7E-13 92.5 4.0 160 75-253 89-262 (285)
130 KOG4660 Protein Mei2, essentia 98.6 5.5E-08 1.2E-12 95.2 5.8 179 166-354 63-250 (549)
131 KOG1365 RNA-binding protein Fu 98.6 2.6E-07 5.6E-12 86.5 9.7 163 178-346 60-236 (508)
132 KOG0151 Predicted splicing reg 98.5 2.1E-07 4.5E-12 93.2 8.1 80 177-256 173-258 (877)
133 KOG4661 Hsp27-ERE-TATA-binding 98.5 2.1E-07 4.6E-12 91.0 7.5 82 272-355 402-486 (940)
134 KOG0533 RRM motif-containing p 98.5 4.3E-07 9.2E-12 82.2 8.7 77 275-353 83-161 (243)
135 KOG0533 RRM motif-containing p 98.5 5.2E-07 1.1E-11 81.6 9.1 80 175-254 80-161 (243)
136 KOG4307 RNA binding protein RB 98.5 1.3E-06 2.7E-11 87.5 12.4 157 75-251 312-510 (944)
137 KOG4454 RNA binding protein (R 98.5 1.2E-07 2.5E-12 82.7 4.5 143 72-249 7-157 (267)
138 KOG0116 RasGAP SH3 binding pro 98.5 2.8E-07 6.1E-12 89.8 6.7 76 179-254 289-366 (419)
139 KOG2193 IGF-II mRNA-binding pr 98.5 1.8E-08 3.9E-13 95.2 -1.6 148 180-351 3-154 (584)
140 KOG4676 Splicing factor, argin 98.5 6E-08 1.3E-12 90.9 1.6 163 179-344 8-217 (479)
141 KOG4209 Splicing factor RNPS1, 98.4 5E-07 1.1E-11 81.8 6.7 83 173-255 96-180 (231)
142 KOG0128 RNA-binding protein SA 98.4 1.4E-07 3E-12 96.4 2.0 141 76-252 669-812 (881)
143 KOG0112 Large RNA-binding prot 98.3 1.4E-06 3E-11 89.7 8.5 155 75-255 373-531 (975)
144 KOG4307 RNA binding protein RB 98.3 1.1E-06 2.4E-11 87.9 7.1 169 179-350 312-510 (944)
145 KOG0116 RasGAP SH3 binding pro 98.3 1.4E-06 3.1E-11 84.9 7.7 81 275-357 288-370 (419)
146 PF04059 RRM_2: RNA recognitio 98.3 4.8E-06 1E-10 64.8 9.1 75 179-253 2-85 (97)
147 PF04059 RRM_2: RNA recognitio 98.3 5.2E-06 1.1E-10 64.6 9.1 78 276-354 2-87 (97)
148 KOG4660 Protein Mei2, essentia 98.3 7.2E-07 1.6E-11 87.5 4.5 77 266-346 66-143 (549)
149 KOG0151 Predicted splicing reg 98.3 3E-06 6.5E-11 85.1 8.7 88 269-358 168-261 (877)
150 KOG4209 Splicing factor RNPS1, 98.3 1.7E-06 3.7E-11 78.4 6.3 81 272-354 98-180 (231)
151 PF11608 Limkain-b1: Limkain b 97.9 8.4E-05 1.8E-09 55.5 7.8 68 276-353 3-76 (90)
152 PF11608 Limkain-b1: Limkain b 97.8 9E-05 1.9E-09 55.4 7.2 67 179-253 3-75 (90)
153 PF08777 RRM_3: RNA binding mo 97.7 0.00011 2.4E-09 58.4 7.0 66 276-346 2-73 (105)
154 PF08777 RRM_3: RNA binding mo 97.6 0.00022 4.8E-09 56.6 7.0 68 179-250 2-75 (105)
155 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00041 8.9E-09 54.4 7.3 78 275-354 6-92 (100)
156 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00033 7.1E-09 48.4 5.6 52 179-235 2-53 (53)
157 KOG1995 Conserved Zn-finger pr 97.4 0.00016 3.6E-09 67.8 4.3 81 273-355 64-155 (351)
158 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0014 3E-08 51.4 7.4 74 178-252 6-89 (100)
159 COG5175 MOT2 Transcriptional r 97.2 0.00097 2.1E-08 62.1 7.3 75 180-254 116-202 (480)
160 KOG2193 IGF-II mRNA-binding pr 97.2 2.1E-05 4.5E-10 74.9 -3.6 146 76-252 3-154 (584)
161 KOG1995 Conserved Zn-finger pr 97.2 0.0003 6.5E-09 66.1 4.0 78 176-253 64-152 (351)
162 KOG0115 RNA-binding protein p5 97.2 0.00091 2E-08 60.2 6.1 101 230-353 6-113 (275)
163 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0016 3.4E-08 45.0 5.4 52 276-333 2-53 (53)
164 COG5175 MOT2 Transcriptional r 97.0 0.0017 3.7E-08 60.5 6.5 75 276-352 115-201 (480)
165 KOG2314 Translation initiation 96.9 0.0034 7.4E-08 62.2 7.7 77 175-251 55-140 (698)
166 PF08952 DUF1866: Domain of un 96.8 0.0053 1.1E-07 51.1 7.2 54 194-253 52-105 (146)
167 PF08952 DUF1866: Domain of un 96.6 0.0096 2.1E-07 49.6 7.7 72 273-352 25-105 (146)
168 KOG2314 Translation initiation 96.6 0.0046 9.9E-08 61.4 6.7 71 275-346 58-137 (698)
169 KOG1855 Predicted RNA-binding 96.6 0.0018 3.9E-08 62.2 3.8 64 175-238 228-306 (484)
170 KOG1996 mRNA splicing factor [ 96.6 0.0059 1.3E-07 56.0 6.7 74 276-351 282-364 (378)
171 KOG3152 TBP-binding protein, a 96.4 0.0016 3.5E-08 58.6 2.1 70 177-246 73-157 (278)
172 KOG4849 mRNA cleavage factor I 96.4 0.0027 5.9E-08 59.4 3.6 73 178-250 80-157 (498)
173 KOG2202 U2 snRNP splicing fact 96.4 0.0015 3.3E-08 58.8 1.9 59 194-252 84-145 (260)
174 KOG1855 Predicted RNA-binding 96.3 0.0042 9.2E-08 59.7 4.2 66 272-338 228-309 (484)
175 KOG2202 U2 snRNP splicing fact 95.9 0.0037 8.1E-08 56.4 1.5 61 290-352 83-146 (260)
176 KOG4676 Splicing factor, argin 95.8 0.017 3.7E-07 55.0 5.5 79 276-355 8-91 (479)
177 KOG3152 TBP-binding protein, a 95.7 0.0062 1.3E-07 54.9 2.2 70 274-344 73-157 (278)
178 KOG1996 mRNA splicing factor [ 95.5 0.045 9.7E-07 50.4 7.0 60 193-252 301-364 (378)
179 KOG4849 mRNA cleavage factor I 95.5 0.014 3E-07 54.8 3.7 75 275-350 80-159 (498)
180 KOG2416 Acinus (induces apopto 95.5 0.013 2.7E-07 58.7 3.6 76 272-352 441-520 (718)
181 PF10309 DUF2414: Protein of u 95.4 0.098 2.1E-06 37.1 6.9 53 276-334 6-60 (62)
182 PF07292 NID: Nmi/IFP 35 domai 95.1 0.028 6.1E-07 42.9 3.7 72 221-297 1-74 (88)
183 PF07576 BRAP2: BRCA1-associat 94.9 0.23 5.1E-06 39.6 8.6 66 277-342 15-81 (110)
184 PF08675 RNA_bind: RNA binding 94.8 0.12 2.7E-06 38.7 6.3 55 276-337 9-64 (87)
185 PF08675 RNA_bind: RNA binding 94.8 0.17 3.6E-06 38.1 6.9 55 177-238 8-63 (87)
186 KOG2416 Acinus (induces apopto 94.5 0.041 8.9E-07 55.2 4.2 73 177-253 443-520 (718)
187 PF10309 DUF2414: Protein of u 94.3 0.3 6.5E-06 34.7 7.1 54 177-236 4-60 (62)
188 KOG0115 RNA-binding protein p5 94.2 0.067 1.5E-06 48.4 4.5 94 151-252 10-111 (275)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 93.7 0.11 2.5E-06 45.1 4.8 66 275-340 7-80 (176)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 93.4 0.11 2.3E-06 45.3 4.2 77 177-253 6-96 (176)
191 KOG4285 Mitotic phosphoprotein 93.4 0.3 6.4E-06 45.3 7.1 69 276-350 198-266 (350)
192 KOG0804 Cytoplasmic Zn-finger 93.3 0.49 1.1E-05 46.3 8.9 68 177-244 73-142 (493)
193 PF07576 BRAP2: BRCA1-associat 93.0 1.1 2.4E-05 35.8 9.2 64 181-244 16-81 (110)
194 KOG2135 Proteins containing th 93.0 0.056 1.2E-06 52.9 2.0 70 181-254 375-445 (526)
195 PF15023 DUF4523: Protein of u 93.0 0.49 1.1E-05 39.2 7.1 74 272-353 83-161 (166)
196 KOG2591 c-Mpl binding protein, 92.9 0.32 7E-06 48.6 7.1 67 275-346 175-245 (684)
197 PF04847 Calcipressin: Calcipr 92.7 0.44 9.5E-06 41.8 7.0 62 288-355 8-72 (184)
198 KOG2068 MOT2 transcription fac 92.5 0.053 1.2E-06 51.0 1.1 76 179-254 78-162 (327)
199 KOG4574 RNA-binding protein (c 92.3 0.098 2.1E-06 54.6 2.8 76 279-360 302-380 (1007)
200 KOG4285 Mitotic phosphoprotein 91.7 0.37 8E-06 44.7 5.5 67 180-251 199-266 (350)
201 KOG0804 Cytoplasmic Zn-finger 91.6 0.52 1.1E-05 46.1 6.7 68 275-342 74-142 (493)
202 KOG2591 c-Mpl binding protein, 91.5 0.36 7.9E-06 48.3 5.6 69 177-250 174-247 (684)
203 PF10567 Nab6_mRNP_bdg: RNA-re 91.1 6.9 0.00015 36.5 13.0 177 175-352 12-230 (309)
204 PF11767 SET_assoc: Histone ly 90.8 1.4 2.9E-05 31.8 6.6 55 188-249 10-65 (66)
205 PF15023 DUF4523: Protein of u 90.6 0.9 1.9E-05 37.7 6.2 73 175-253 83-160 (166)
206 PF04847 Calcipressin: Calcipr 90.3 1.1 2.3E-05 39.4 6.9 59 191-253 8-69 (184)
207 KOG2253 U1 snRNP complex, subu 90.0 0.34 7.3E-06 49.5 3.9 145 176-334 38-194 (668)
208 KOG2068 MOT2 transcription fac 89.1 0.18 3.9E-06 47.5 1.3 77 276-354 78-163 (327)
209 KOG2135 Proteins containing th 88.6 0.36 7.9E-06 47.4 2.9 70 280-355 377-447 (526)
210 KOG4574 RNA-binding protein (c 86.9 0.54 1.2E-05 49.4 3.1 72 180-255 300-374 (1007)
211 PF03880 DbpA: DbpA RNA bindin 85.2 3.2 7E-05 30.4 5.9 59 285-351 11-74 (74)
212 PF14111 DUF4283: Domain of un 84.9 1.5 3.3E-05 36.6 4.6 118 189-321 28-150 (153)
213 PF03880 DbpA: DbpA RNA bindin 84.2 4.5 9.7E-05 29.6 6.3 58 188-252 11-74 (74)
214 KOG2253 U1 snRNP complex, subu 83.2 1 2.2E-05 46.1 3.1 68 274-350 39-107 (668)
215 PF11767 SET_assoc: Histone ly 80.7 7.2 0.00016 28.1 5.9 53 286-346 11-64 (66)
216 KOG4483 Uncharacterized conser 70.6 10 0.00022 36.9 5.7 63 274-341 390-452 (528)
217 KOG2318 Uncharacterized conser 67.8 19 0.00041 36.7 7.2 75 272-346 171-299 (650)
218 KOG4483 Uncharacterized conser 67.5 15 0.00032 35.8 6.1 56 177-237 390-446 (528)
219 PF03468 XS: XS domain; Inter 66.0 6 0.00013 31.9 2.8 57 180-237 10-76 (116)
220 PRK14548 50S ribosomal protein 60.8 31 0.00067 26.1 5.6 57 277-334 22-79 (84)
221 TIGR03636 L23_arch archaeal ri 57.9 39 0.00085 25.1 5.7 57 277-334 15-72 (77)
222 KOG4365 Uncharacterized conser 56.9 1.8 3.9E-05 42.3 -2.0 84 276-362 4-90 (572)
223 PF07292 NID: Nmi/IFP 35 domai 54.8 3.7 8E-05 31.4 -0.2 26 175-200 49-74 (88)
224 KOG4410 5-formyltetrahydrofola 52.6 18 0.00038 33.7 3.7 46 180-229 332-378 (396)
225 PF03468 XS: XS domain; Inter 48.8 20 0.00043 28.9 3.1 48 277-326 10-66 (116)
226 PF11411 DNA_ligase_IV: DNA li 45.3 16 0.00035 22.9 1.6 16 85-100 20-35 (36)
227 PF14111 DUF4283: Domain of un 40.6 62 0.0013 26.7 5.1 85 127-221 56-148 (153)
228 KOG2318 Uncharacterized conser 39.1 1.5E+02 0.0033 30.5 8.1 77 175-251 171-304 (650)
229 KOG1295 Nonsense-mediated deca 38.6 44 0.00096 32.4 4.2 66 177-242 6-77 (376)
230 KOG1295 Nonsense-mediated deca 37.1 37 0.0008 32.9 3.4 65 276-340 8-77 (376)
231 PF02714 DUF221: Domain of unk 34.8 63 0.0014 30.6 4.8 55 221-297 1-56 (325)
232 PRK05738 rplW 50S ribosomal pr 34.5 73 0.0016 24.4 4.1 37 277-313 21-58 (92)
233 PF15513 DUF4651: Domain of un 33.6 42 0.00092 23.8 2.4 27 88-114 8-34 (62)
234 KOG4410 5-formyltetrahydrofola 33.4 1.1E+02 0.0024 28.6 5.7 48 274-326 329-377 (396)
235 PTZ00191 60S ribosomal protein 32.6 1.3E+02 0.0029 25.2 5.6 56 277-333 83-139 (145)
236 PF09707 Cas_Cas2CT1978: CRISP 32.4 1.1E+02 0.0024 23.2 4.7 50 177-227 24-73 (86)
237 KOG2891 Surface glycoprotein [ 31.2 48 0.001 30.8 3.0 38 175-212 146-195 (445)
238 PF10567 Nab6_mRNP_bdg: RNA-re 26.9 1.1E+02 0.0024 28.8 4.6 75 275-351 15-105 (309)
239 CHL00030 rpl23 ribosomal prote 26.5 1.1E+02 0.0024 23.6 3.9 37 277-313 20-57 (93)
240 PRK11558 putative ssRNA endonu 25.6 1.4E+02 0.003 23.3 4.2 49 178-227 27-75 (97)
241 KOG2295 C2H2 Zn-finger protein 25.5 19 0.00041 36.6 -0.6 84 275-362 231-317 (648)
242 PF14893 PNMA: PNMA 24.7 60 0.0013 31.2 2.6 51 177-227 17-71 (331)
243 KOG4019 Calcineurin-mediated s 22.8 96 0.0021 27.0 3.2 39 315-354 50-90 (193)
244 PRK14548 50S ribosomal protein 22.3 3.3E+02 0.0072 20.5 5.7 56 180-236 22-79 (84)
245 TIGR03636 L23_arch archaeal ri 21.8 3.1E+02 0.0068 20.2 5.4 55 180-235 15-71 (77)
246 PRK12280 rplW 50S ribosomal pr 21.6 1.4E+02 0.003 25.4 3.9 36 277-312 23-59 (158)
247 KOG0156 Cytochrome P450 CYP2 s 21.5 1.6E+02 0.0034 30.0 5.1 62 179-247 33-97 (489)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.4e-43 Score=340.98 Aligned_cols=257 Identities=18% Similarity=0.279 Sum_probs=212.7
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
..++|+|++++++++|+++|++||+|.+|+|++|+.++++ + |||||+|.+ .+ +|.. |++.+
T Consensus 5 ~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s-~---------g~afV~f~~-~~------~A~~--Ai~~l 65 (352)
T TIGR01661 5 NLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQS-L---------GYGFVNYVR-PE------DAEK--AVNSL 65 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCcc-c---------eEEEEEECc-HH------HHHH--HHhhc
Confidence 5678999999999999999999999999999999999988 8 999999999 66 6888 99988
Q ss_pred CCC--CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHH
Q 017846 156 GYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGA 231 (365)
Q Consensus 156 ~~~--~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A 231 (365)
++. .|++ +.+....+........+|||+|||.++++++|+++|++||.|..++++.+. +.++|||||+|.+.++|
T Consensus 66 ~g~~l~g~~-i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A 144 (352)
T TIGR01661 66 NGLRLQNKT-IKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEA 144 (352)
T ss_pred ccEEECCee-EEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHH
Confidence 877 6776 333333333334456789999999999999999999999999999999886 34799999999999999
Q ss_pred HHHHH-hCCceeCC--eeEEEeeCCCCCCCCCC------------CC---------------------------------
Q 017846 232 RAALS-LAGTMLGF--YPVRVLPSKTAIAPVNP------------TF--------------------------------- 263 (365)
Q Consensus 232 ~~Al~-l~g~~i~g--~~l~V~~a~~~~~~~~~------------~~--------------------------------- 263 (365)
.+|++ |||..+.| .+|.|.++......... ..
T Consensus 145 ~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (352)
T TIGR01661 145 DRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTA 224 (352)
T ss_pred HHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhh
Confidence 99998 99999887 67899887533210000 00
Q ss_pred --------------------CCCCch-------------hhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEec
Q 017846 264 --------------------LPRSED-------------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLG 310 (365)
Q Consensus 264 --------------------~~~~~~-------------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~ 310 (365)
.+.... .....+.+|||+|||+.+++++|+++|++ ||.|.+|+|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~-fG~v~~v~i~~ 303 (352)
T TIGR01661 225 VLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGP-FGAVQNVKIIR 303 (352)
T ss_pred hhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeE
Confidence 000000 00112347999999999999999999999 59999999999
Q ss_pred cC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 017846 311 DY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 311 d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~ 354 (365)
|. +.++|||||+|.+.++|.+|+. |||..|+|++|+ |.|..+.
T Consensus 304 d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~-V~~~~~~ 349 (352)
T TIGR01661 304 DLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQ-VSFKTNK 349 (352)
T ss_pred cCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEE-EEEccCC
Confidence 86 6899999999999999999999 999999999999 9997654
No 2
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-40 Score=290.25 Aligned_cols=253 Identities=18% Similarity=0.283 Sum_probs=213.0
Q ss_pred cCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcCCC
Q 017846 79 MGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS 158 (365)
Q Consensus 79 ~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~ 158 (365)
+.=|+-.-+.++|+.+|+.+|+|+||+++||+.|+.| + |||||+|.. +. ||++ |+..+|+.
T Consensus 46 vNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqS-L---------GYGFVNYv~-p~------DAe~--AintlNGL 106 (360)
T KOG0145|consen 46 VNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQS-L---------GYGFVNYVR-PK------DAEK--AINTLNGL 106 (360)
T ss_pred eeecccccCHHHHHHHhhcccceeeeeeeeccccccc-c---------ccceeeecC-hH------HHHH--HHhhhcce
Confidence 3445566689999999999999999999999999999 9 999999999 77 8999 99999887
Q ss_pred --CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHH
Q 017846 159 --QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAA 234 (365)
Q Consensus 159 --~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~A 234 (365)
+.|. +.+...++..+.....+|||.+||..+|..+|+++|++||.|..-+|+.|..+ +||.|||.|....+|+.|
T Consensus 107 rLQ~KT-IKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~A 185 (360)
T KOG0145|consen 107 RLQNKT-IKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEA 185 (360)
T ss_pred eeccce-EEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHH
Confidence 6666 33334444555667788999999999999999999999999999999999855 799999999999999999
Q ss_pred HH-hCCceeCC--eeEEEeeCCCCCCCCCC--------------------------------------CCCCCCchh---
Q 017846 235 LS-LAGTMLGF--YPVRVLPSKTAIAPVNP--------------------------------------TFLPRSEDE--- 270 (365)
Q Consensus 235 l~-l~g~~i~g--~~l~V~~a~~~~~~~~~--------------------------------------~~~~~~~~~--- 270 (365)
++ |||+.-.| .+|.|+++..+...... .|.|...+.
T Consensus 186 Ik~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~ 265 (360)
T KOG0145|consen 186 IKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSG 265 (360)
T ss_pred HHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccce
Confidence 99 99999887 48999998643211110 011111110
Q ss_pred --------hcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCce
Q 017846 271 --------REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAV 339 (365)
Q Consensus 271 --------~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~ 339 (365)
....+.+|||.||.++.+|.-||++|++| |.|..|+|++|. ++++|||||.+.+-++|..||. |||..
T Consensus 266 l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF-GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~ 344 (360)
T KOG0145|consen 266 LAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPF-GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 344 (360)
T ss_pred eeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc-cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcc
Confidence 13357799999999999999999999995 999999999997 5899999999999999999999 99999
Q ss_pred eCCeeeEEeecCCC
Q 017846 340 LGSLPIRLVSPSKT 353 (365)
Q Consensus 340 l~g~~l~~V~~a~~ 353 (365)
++++.|+ |+|.-.
T Consensus 345 lg~rvLQ-VsFKtn 357 (360)
T KOG0145|consen 345 LGDRVLQ-VSFKTN 357 (360)
T ss_pred ccceEEE-EEEecC
Confidence 9999999 998543
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.4e-40 Score=308.20 Aligned_cols=276 Identities=21% Similarity=0.285 Sum_probs=230.4
Q ss_pred CCCCCcchhccccccCCCCCCCC-ceeeeecccchhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccC
Q 017846 41 SGNGNANIQIQNGQTKPGAGAGG-GFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFN 119 (365)
Q Consensus 41 ~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~ 119 (365)
.....|..++..+|.+-|+...+ ......++ .+.++|+++-+.-+++|+.+|++.|+|.++++|+|+.++.+ |
T Consensus 52 ~E~tgy~l~ve~gqrk~ggPpP~weg~~p~~G---~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~n-R-- 125 (506)
T KOG0117|consen 52 LERTGYTLVVENGQRKYGGPPPGWEGPPPPRG---CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDN-R-- 125 (506)
T ss_pred HHhcCceEEEeccccccCCCCCcccCCCCCCC---ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCC-c--
Confidence 45578889999999887765443 22222233 38899999999999999999999999999999999999988 8
Q ss_pred CCCCCCCCeEEeeecccCCCCcccccccchhhhhhcCCC---CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHH
Q 017846 120 PAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS---QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLA 196 (365)
Q Consensus 120 ~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~---~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~ 196 (365)
|||||.|.++.. |+. |++.+|.. .||+ +.+..+ ..++.|||||||.+.++++|.
T Consensus 126 -------GYAFVtf~~Ke~-------Aq~--Aik~lnn~Eir~GK~---igvc~S----van~RLFiG~IPK~k~keeIl 182 (506)
T KOG0117|consen 126 -------GYAFVTFCTKEE-------AQE--AIKELNNYEIRPGKL---LGVCVS----VANCRLFIGNIPKTKKKEEIL 182 (506)
T ss_pred -------ceEEEEeecHHH-------HHH--HHHHhhCccccCCCE---eEEEEe----eecceeEeccCCccccHHHHH
Confidence 999999999544 888 99998887 7777 444433 357889999999999999999
Q ss_pred HHhhhCCC-eeEEEEecCC---CCCceEEEEEeCCHHHHHHHHH--hCCce-eCCeeEEEeeCCCCCCCCCCCCCCCCch
Q 017846 197 TLFLTCGQ-VVDCRICGDP---NSVLRFAFVEFTDEEGARAALS--LAGTM-LGFYPVRVLPSKTAIAPVNPTFLPRSED 269 (365)
Q Consensus 197 ~~F~~~G~-i~~v~i~~d~---~~~kg~aFV~F~~~~~A~~Al~--l~g~~-i~g~~l~V~~a~~~~~~~~~~~~~~~~~ 269 (365)
+.|++.++ |++|.+..++ .++||||||+|.++..|..|-. +++.. +.|..+.|.||.+...+. .
T Consensus 183 ee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~d---------e 253 (506)
T KOG0117|consen 183 EEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPD---------E 253 (506)
T ss_pred HHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCC---------h
Confidence 99999985 6667666644 4579999999999999999986 56554 789999999996432211 1
Q ss_pred hhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 270 EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
+.....+.|||+||+.++||+.|+++|++| |.|++|+.++| ||||.|.++++|.+|++ +||.+|+|..|. |
T Consensus 254 d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~-G~veRVkk~rD------YaFVHf~eR~davkAm~~~ngkeldG~~iE-v 325 (506)
T KOG0117|consen 254 DTMSKVKVLYVRNLMESTTEETLKKLFNEF-GKVERVKKPRD------YAFVHFAEREDAVKAMKETNGKELDGSPIE-V 325 (506)
T ss_pred hhhhheeeeeeeccchhhhHHHHHHHHHhc-cceEEeecccc------eeEEeecchHHHHHHHHHhcCceecCceEE-E
Confidence 134456899999999999999999999995 99999999987 99999999999999999 999999999999 9
Q ss_pred ecCCCCCCCCCCCC
Q 017846 349 SPSKTPVRPRAPRP 362 (365)
Q Consensus 349 ~~a~~~~~~r~~~~ 362 (365)
.++||+..++..|+
T Consensus 326 tLAKP~~k~k~~r~ 339 (506)
T KOG0117|consen 326 TLAKPVDKKKKERK 339 (506)
T ss_pred EecCChhhhccchh
Confidence 99999988776653
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.2e-39 Score=333.56 Aligned_cols=246 Identities=22% Similarity=0.330 Sum_probs=215.0
Q ss_pred hhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcC
Q 017846 77 RKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNG 156 (365)
Q Consensus 77 ~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~ 156 (365)
.++|+|++++++++|+++|++||+|.+|+|++|..|+++ + |||||+|.+ .+ +|++ |+..++
T Consensus 3 l~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s-~---------G~afV~F~~-~~------~A~~--Al~~ln 63 (562)
T TIGR01628 3 LYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRS-L---------GYGYVNFQN-PA------DAER--ALETMN 63 (562)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCc-c---------eEEEEEECC-HH------HHHH--HHHHhC
Confidence 578999999999999999999999999999999999999 8 999999999 66 7999 999998
Q ss_pred CC--CCcccccccCCccccCC----CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHH
Q 017846 157 YS--QGKRRMNCRTSNAQQDE----VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEE 229 (365)
Q Consensus 157 ~~--~gk~~~~~~~~~~~~~~----~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~ 229 (365)
+. .|++ +++.++.+++ ....+|||+|||.++++++|+++|+.||.|.+|+++.+. ++++|||||+|.+.+
T Consensus 64 ~~~i~gk~---i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e 140 (562)
T TIGR01628 64 FKRLGGKP---IRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEE 140 (562)
T ss_pred CCEECCee---EEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHH
Confidence 87 8888 6666665433 234579999999999999999999999999999999987 458999999999999
Q ss_pred HHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEE
Q 017846 230 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL 308 (365)
Q Consensus 230 ~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i 308 (365)
+|.+|++ ++|..+.|+.|.|.+........ .......++|||+|||..+|+++|+++|++ ||.|.++.+
T Consensus 141 ~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~---------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~-fG~i~~~~i 210 (562)
T TIGR01628 141 SAKAAIQKVNGMLLNDKEVYVGRFIKKHERE---------AAPLKKFTNLYVKNLDPSVNEDKLRELFAK-FGEITSAAV 210 (562)
T ss_pred HHHHHHHHhcccEecCceEEEeccccccccc---------cccccCCCeEEEeCCCCcCCHHHHHHHHHh-cCCEEEEEE
Confidence 9999998 99999999999998753221110 112234578999999999999999999999 599999999
Q ss_pred eccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeC----CeeeEEeecCCCCC
Q 017846 309 LGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLG----SLPIRLVSPSKTPV 355 (365)
Q Consensus 309 ~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~----g~~l~~V~~a~~~~ 355 (365)
.++. +.++|||||+|.+.++|.+|++ |||..+. |+.|. |.++++..
T Consensus 211 ~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~-v~~a~~k~ 262 (562)
T TIGR01628 211 MKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY-VGRAQKRA 262 (562)
T ss_pred EECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE-eecccChh
Confidence 9886 6789999999999999999999 9999999 99999 98876553
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=3.7e-38 Score=315.61 Aligned_cols=271 Identities=21% Similarity=0.219 Sum_probs=214.4
Q ss_pred CCCCCcchhccccccCCCCCCCCceeeeecccchhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCC
Q 017846 41 SGNGNANIQIQNGQTKPGAGAGGGFVNVNASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNP 120 (365)
Q Consensus 41 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~ 120 (365)
...+.|...+.++|...|.....- .. .........++|+|+|++++++|+++|++||+|.+|+|++| .++++ +
T Consensus 27 ~~~~gy~~~~~~g~r~~g~Pp~~~-~~-~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~s-R--- 99 (578)
T TIGR01648 27 LERTGYTLVQENGQRKYGGPPPGW-SG-VQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQN-R--- 99 (578)
T ss_pred HHhhCccccccCCcccCCCCCCcc-cC-CCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCc-c---
Confidence 445677778888887776432221 11 11233457899999999999999999999999999999999 77878 8
Q ss_pred CCCCCCCeEEeeecccCCCCcccccccchhhhhhcCCC---CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHH
Q 017846 121 AFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS---QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLAT 197 (365)
Q Consensus 121 ~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~---~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~ 197 (365)
|||||+|.+ .+ +|+. |++.++.. .|+. +.+..+ ...++|||+|||.++++++|.+
T Consensus 100 ------GfaFV~F~~-~e------~A~~--Ai~~lng~~i~~Gr~---l~V~~S----~~~~rLFVgNLP~~~TeeeL~e 157 (578)
T TIGR01648 100 ------GYAFVTFCG-KE------EAKE--AVKLLNNYEIRPGRL---LGVCIS----VDNCRLFVGGIPKNKKREEILE 157 (578)
T ss_pred ------ceEEEEeCC-HH------HHHH--HHHHcCCCeecCCcc---cccccc----ccCceeEeecCCcchhhHHHHH
Confidence 999999999 66 6888 99998866 3444 222222 2467899999999999999999
Q ss_pred HhhhCCC-eeEEEEec---CCCCCceEEEEEeCCHHHHHHHHH-hCC--ceeCCeeEEEeeCCCCCCCCCCCCCCCCchh
Q 017846 198 LFLTCGQ-VVDCRICG---DPNSVLRFAFVEFTDEEGARAALS-LAG--TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDE 270 (365)
Q Consensus 198 ~F~~~G~-i~~v~i~~---d~~~~kg~aFV~F~~~~~A~~Al~-l~g--~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~ 270 (365)
.|++++. ++++.+.. +..+++|||||+|.++++|..|++ |+. ..+.|+.|.|.|+.+..... ..
T Consensus 158 eFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d---------~~ 228 (578)
T TIGR01648 158 EFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD---------ED 228 (578)
T ss_pred HhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccc---------cc
Confidence 9999874 44444432 224579999999999999999997 643 45789999999986422110 11
Q ss_pred hcccccEEEeeCCCCCCCHHHHHHHhhhcC--CceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 017846 271 REMCSRTIYCTNIDKKVTQGDIKLFFESVC--GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRL 347 (365)
Q Consensus 271 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~~--G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~ 347 (365)
.....++|||+|||..+++++|+++|++ | |.|.+|++++ +||||+|.+.++|.+|++ |||..|.|+.|+
T Consensus 229 ~~~~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~~r------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~- 300 (578)
T TIGR01648 229 VMAKVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKKIR------DYAFVHFEDREDAVKAMDELNGKELEGSEIE- 300 (578)
T ss_pred ccccccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEeec------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEE-
Confidence 1223578999999999999999999999 8 9999998865 499999999999999999 999999999999
Q ss_pred eecCCCCCCC
Q 017846 348 VSPSKTPVRP 357 (365)
Q Consensus 348 V~~a~~~~~~ 357 (365)
|+|++++..+
T Consensus 301 V~~Akp~~~~ 310 (578)
T TIGR01648 301 VTLAKPVDKK 310 (578)
T ss_pred EEEccCCCcc
Confidence 9999887554
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.5e-37 Score=316.59 Aligned_cols=256 Identities=21% Similarity=0.330 Sum_probs=207.8
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
..++++|++++++++|+++|++||.|.+|+|++|.. +++ + |||||.|.+ .+ +|.. |++.+
T Consensus 90 ~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~-g~s-k---------g~afV~F~~-~e------~A~~--Ai~~l 149 (562)
T TIGR01628 90 NIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDEN-GKS-R---------GYGFVHFEK-EE------SAKA--AIQKV 149 (562)
T ss_pred ceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCC-CCc-c---------cEEEEEECC-HH------HHHH--HHHHh
Confidence 457899999999999999999999999999999864 445 5 999999999 55 6888 99888
Q ss_pred CCC--CCcccccccC--Ccccc---CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEeCC
Q 017846 156 GYS--QGKRRMNCRT--SNAQQ---DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTD 227 (365)
Q Consensus 156 ~~~--~gk~~~~~~~--~~~~~---~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F~~ 227 (365)
+.. .|+. +.+.. ....+ .....++|||+|||.++|+++|+++|+.||.|.++.++.+.. .++|||||+|.+
T Consensus 150 ng~~~~~~~-i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~ 228 (562)
T TIGR01628 150 NGMLLNDKE-VYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEK 228 (562)
T ss_pred cccEecCce-EEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECC
Confidence 776 5555 11111 11111 223456799999999999999999999999999999999863 579999999999
Q ss_pred HHHHHHHHH-hCCceeC----CeeEEEeeCCCCCCCCC---CCCCC-CCchhhcccccEEEeeCCCCCCCHHHHHHHhhh
Q 017846 228 EEGARAALS-LAGTMLG----FYPVRVLPSKTAIAPVN---PTFLP-RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 298 (365)
Q Consensus 228 ~~~A~~Al~-l~g~~i~----g~~l~V~~a~~~~~~~~---~~~~~-~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 298 (365)
.++|.+|++ ++|..+. |+.|.|.++........ ..+.. ...........+|||+||+..+++++|+++|++
T Consensus 229 ~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~ 308 (562)
T TIGR01628 229 HEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSE 308 (562)
T ss_pred HHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHh
Confidence 999999998 9999999 99999998753211100 00000 000011334578999999999999999999999
Q ss_pred cCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 017846 299 VCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 299 ~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~ 354 (365)
||.|.+|+|+.+. +.++|||||+|.+.++|.+|+. |||..|+|++|. |.+++..
T Consensus 309 -~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~-V~~a~~k 364 (562)
T TIGR01628 309 -CGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLY-VALAQRK 364 (562)
T ss_pred -cCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeE-EEeccCc
Confidence 6999999999986 7899999999999999999999 999999999999 9998753
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.7e-35 Score=293.65 Aligned_cols=244 Identities=19% Similarity=0.193 Sum_probs=192.9
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
-.++|+|+|++++++|+++|++||+|.+|.|+++ + |||||+|.+ .+ +|.. |+..+
T Consensus 4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-------k---------~~afVef~~-~e------~A~~--Ai~~~ 58 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-------K---------RQALVEFED-EE------SAKA--CVNFA 58 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-------C---------CEEEEEeCc-hH------HHHH--HHHHh
Confidence 3578999999999999999999999999999863 5 999999999 55 5888 88754
Q ss_pred --CCC--CCcccccccCCccccC--------------CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCC
Q 017846 156 --GYS--QGKRRMNCRTSNAQQD--------------EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV 217 (365)
Q Consensus 156 --~~~--~gk~~~~~~~~~~~~~--------------~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~ 217 (365)
+.. .|++ +++.++... .....+|||+||+..+|+++|+++|+.||.|.+|.|+++.+
T Consensus 59 ~~~~~~l~g~~---l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~-- 133 (481)
T TIGR01649 59 TSVPIYIRGQP---AFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN-- 133 (481)
T ss_pred hcCCceEcCeE---EEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC--
Confidence 222 7776 333322110 11123699999999999999999999999999999987654
Q ss_pred ceEEEEEeCCHHHHHHHHH-hCCceeCC--eeEEEeeCCCCCCC------CC-----CCC---------------CC---
Q 017846 218 LRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSKTAIAP------VN-----PTF---------------LP--- 265 (365)
Q Consensus 218 kg~aFV~F~~~~~A~~Al~-l~g~~i~g--~~l~V~~a~~~~~~------~~-----~~~---------------~~--- 265 (365)
+|+|||+|.+.++|.+|++ |||..|.| +.|+|.|++..... .. +.. .+
T Consensus 134 ~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~ 213 (481)
T TIGR01649 134 VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALL 213 (481)
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccc
Confidence 4799999999999999998 99999964 58899887642110 00 000 00
Q ss_pred -----------------------------------CC-----------------chhhcccccEEEeeCCCC-CCCHHHH
Q 017846 266 -----------------------------------RS-----------------EDEREMCSRTIYCTNIDK-KVTQGDI 292 (365)
Q Consensus 266 -----------------------------------~~-----------------~~~~~~~~~~l~V~nLp~-~~te~~L 292 (365)
.. ......++.+|||+|||+ .+|+++|
T Consensus 214 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L 293 (481)
T TIGR01649 214 GQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRL 293 (481)
T ss_pred cCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHH
Confidence 00 000013567999999998 6999999
Q ss_pred HHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 017846 293 KLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 293 ~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~ 354 (365)
+++|++ ||.|.+|+|++++ +|||||+|.+.++|..|+. |||..|.|++|+ |.+++..
T Consensus 294 ~~lF~~-yG~V~~vki~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~-v~~s~~~ 351 (481)
T TIGR01649 294 FNLFCV-YGNVERVKFMKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLR-VCPSKQQ 351 (481)
T ss_pred HHHHHh-cCCeEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEE-EEEcccc
Confidence 999999 6999999999873 5899999999999999999 999999999999 9998654
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.1e-34 Score=288.96 Aligned_cols=251 Identities=19% Similarity=0.204 Sum_probs=197.2
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
...+++|+|.+++++|+++|++||+|.+|.|+++.. . |+|||+|.+ .+ +|.+ |++.+
T Consensus 98 ~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~-----~---------~~afVef~~-~~------~A~~--A~~~L 154 (481)
T TIGR01649 98 RVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN-----V---------FQALVEFES-VN------SAQH--AKAAL 154 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC-----c---------eEEEEEECC-HH------HHHH--HHHHh
Confidence 456799999999999999999999999999987532 3 899999999 66 6888 88888
Q ss_pred CCC--CCc-c----------cccccCCccc--------------------------------------------------
Q 017846 156 GYS--QGK-R----------RMNCRTSNAQ-------------------------------------------------- 172 (365)
Q Consensus 156 ~~~--~gk-~----------~~~~~~~~~~-------------------------------------------------- 172 (365)
|+. .+. . .+++.....+
T Consensus 155 ng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (481)
T TIGR01649 155 NGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAP 234 (481)
T ss_pred cCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCc
Confidence 777 221 0 1111000000
Q ss_pred -----------------------------------cCCCCCcEEEEcCCCC-CCcHHHHHHHhhhCCCeeEEEEecCCCC
Q 017846 173 -----------------------------------QDEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNS 216 (365)
Q Consensus 173 -----------------------------------~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~ 216 (365)
......++|||+|||+ .+++++|+++|+.||.|.+|+|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-- 312 (481)
T TIGR01649 235 LAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-- 312 (481)
T ss_pred ccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--
Confidence 0011346899999998 69999999999999999999999874
Q ss_pred CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCC------------CCC----CCc-------hhhc
Q 017846 217 VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPT------------FLP----RSE-------DERE 272 (365)
Q Consensus 217 ~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~------------~~~----~~~-------~~~~ 272 (365)
+|||||+|.+.++|..|+. |||..|.|++|+|.+++......... +.. +.. ....
T Consensus 313 -~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~ 391 (481)
T TIGR01649 313 -KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQ 391 (481)
T ss_pred -CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccC
Confidence 5899999999999999998 99999999999999986432111000 000 000 0012
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCc--eEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCee-----
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGE--VQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP----- 344 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~--I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~----- 344 (365)
.+.++|||+|||..+++++|+++|++ ||. |..|++....+..+++|||+|.+.++|..||. |||+.|.++.
T Consensus 392 ~ps~~L~v~NLp~~~tee~L~~lF~~-~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~ 470 (481)
T TIGR01649 392 PPSATLHLSNIPLSVSEEDLKELFAE-NGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPY 470 (481)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHh-cCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccc
Confidence 35689999999999999999999999 597 88999987665578999999999999999999 9999999985
Q ss_pred -eEEeecCCCC
Q 017846 345 -IRLVSPSKTP 354 (365)
Q Consensus 345 -l~~V~~a~~~ 354 (365)
|+ |+++++.
T Consensus 471 ~lk-v~fs~~~ 480 (481)
T TIGR01649 471 HLK-VSFSTSR 480 (481)
T ss_pred eEE-EEeccCC
Confidence 99 9999875
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.5e-34 Score=289.09 Aligned_cols=256 Identities=20% Similarity=0.281 Sum_probs=200.8
Q ss_pred hhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhh
Q 017846 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (365)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~ 153 (365)
.+..++|+|++++++++|+++|++||+|.+|+|++|+.++++ + |||||+|.+ .+ +|.+ |+.
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~s-k---------g~afVeF~~-~e------~A~~--Al~ 149 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRS-K---------GVAYVEFYD-VE------SVIK--ALA 149 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCc-c---------eEEEEEECC-HH------HHHH--HHH
Confidence 345788999999999999999999999999999999999988 8 999999999 55 6888 886
Q ss_pred hcCCC-CCcccccccCCccc------------cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCc
Q 017846 154 RNGYS-QGKRRMNCRTSNAQ------------QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVL 218 (365)
Q Consensus 154 ~~~~~-~gk~~~~~~~~~~~------------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~k 218 (365)
..+.. .|++ +.+...... ......++|||+|||..+++++|+++|++||.|..|.++.++. .++
T Consensus 150 l~g~~~~g~~-i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~ 228 (457)
T TIGR01622 150 LTGQMLLGRP-IIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSK 228 (457)
T ss_pred hCCCEECCee-eEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccc
Confidence 44333 5655 222221111 0011257899999999999999999999999999999999875 469
Q ss_pred eEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCC----------------------------------C---
Q 017846 219 RFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPV----------------------------------N--- 260 (365)
Q Consensus 219 g~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~----------------------------------~--- 260 (365)
|||||+|.+.++|.+|++ |+|..|.|++|.|.++....... .
T Consensus 229 g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (457)
T TIGR01622 229 GFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDG 308 (457)
T ss_pred eEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCc
Confidence 999999999999999998 99999999999999954210000 0
Q ss_pred ----C-C------------------CCC--------------C-Cch-hhcccccEEEeeCCCCCCC----------HHH
Q 017846 261 ----P-T------------------FLP--------------R-SED-EREMCSRTIYCTNIDKKVT----------QGD 291 (365)
Q Consensus 261 ----~-~------------------~~~--------------~-~~~-~~~~~~~~l~V~nLp~~~t----------e~~ 291 (365)
+ . ..+ . ... ....+.++|+|.||....+ .+|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~d 388 (457)
T TIGR01622 309 GLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDD 388 (457)
T ss_pred cccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHH
Confidence 0 0 000 0 000 0124668999999955444 368
Q ss_pred HHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 017846 292 IKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKT 353 (365)
Q Consensus 292 L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~ 353 (365)
|++.|++ ||.|..|.|... ...|++||+|.+.++|.+|++ |||..|+|+.|. +.+...
T Consensus 389 v~~e~~k-~G~v~~v~v~~~--~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~-~~~~~~ 447 (457)
T TIGR01622 389 VKEECSK-YGGVVHIYVDTK--NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMIT-AAFVVN 447 (457)
T ss_pred HHHHHHh-cCCeeEEEEeCC--CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEE-EEEEcH
Confidence 9999999 699999998643 356899999999999999999 999999999999 887543
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.1e-35 Score=273.05 Aligned_cols=268 Identities=20% Similarity=0.297 Sum_probs=215.7
Q ss_pred cccchhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccch
Q 017846 70 ASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTT 149 (365)
Q Consensus 70 ~~~~~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~ 149 (365)
.+....++++|-++...+|+||+++|++||.|.+|.|++|+.|+.+ + |||||.|+++ . +|.+
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s-~---------gcCFv~~~tr-k------~a~~- 91 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQS-K---------GCCFVKYYTR-K------EADE- 91 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcc-c---------ceEEEEeccH-H------HHHH-
Confidence 3455679999999999999999999999999999999999999999 8 9999999994 4 3555
Q ss_pred hhhhhcCCC---CCcc-cccccCCccccCC-CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEE
Q 017846 150 TRRKRNGYS---QGKR-RMNCRTSNAQQDE-VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFV 223 (365)
Q Consensus 150 ~a~~~~~~~---~gk~-~~~~~~~~~~~~~-~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV 223 (365)
|+..++.. .|-+ .+.++....+++. ...++||||-|+..++|.+++++|++||.|++|+|++|.. .+||||||
T Consensus 92 -a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV 170 (510)
T KOG0144|consen 92 -AINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFV 170 (510)
T ss_pred -HHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEE
Confidence 55444433 4444 4445544444332 2367899999999999999999999999999999999884 58999999
Q ss_pred EeCCHHHHHHHHH-hCCce-eCC--eeEEEeeCCCCCCCC-------------------CCC------------------
Q 017846 224 EFTDEEGARAALS-LAGTM-LGF--YPVRVLPSKTAIAPV-------------------NPT------------------ 262 (365)
Q Consensus 224 ~F~~~~~A~~Al~-l~g~~-i~g--~~l~V~~a~~~~~~~-------------------~~~------------------ 262 (365)
+|.+.+.|..||+ |||.. +.| .+|.|+|+++..... +|.
T Consensus 171 ~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq 250 (510)
T KOG0144|consen 171 KFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQ 250 (510)
T ss_pred EEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhh
Confidence 9999999999999 99876 666 499999986421000 000
Q ss_pred ----------------------------------------------------CC------C---------C---------
Q 017846 263 ----------------------------------------------------FL------P---------R--------- 266 (365)
Q Consensus 263 ----------------------------------------------------~~------~---------~--------- 266 (365)
.. + .
T Consensus 251 ~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~a 330 (510)
T KOG0144|consen 251 TQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLA 330 (510)
T ss_pred ccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchh
Confidence 00 0 0
Q ss_pred --------------------------------------------C-----------------------------------
Q 017846 267 --------------------------------------------S----------------------------------- 267 (365)
Q Consensus 267 --------------------------------------------~----------------------------------- 267 (365)
.
T Consensus 331 q~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq 410 (510)
T KOG0144|consen 331 QLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQ 410 (510)
T ss_pred hhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhh
Confidence 0
Q ss_pred ------chhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCc
Q 017846 268 ------EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGA 338 (365)
Q Consensus 268 ------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~ 338 (365)
.....+.+..|||.+||.+.-+.+|-..|.+| |.|.+.++..|+ +-+++|+||.|++..+|..||. |||+
T Consensus 411 ~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pf-G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngf 489 (510)
T KOG0144|consen 411 AQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPF-GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGF 489 (510)
T ss_pred hhcccCccccCCCccceeeeeCchhhhhHHHHHHhccc-cceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcch
Confidence 00002345689999999999999999999995 999999999887 6799999999999999999999 9999
Q ss_pred eeCCeeeEEeecCCCCCCCC
Q 017846 339 VLGSLPIRLVSPSKTPVRPR 358 (365)
Q Consensus 339 ~l~g~~l~~V~~a~~~~~~r 358 (365)
.++.++|+ |...+..-.+.
T Consensus 490 Qig~Krlk-VQlk~~~~np~ 508 (510)
T KOG0144|consen 490 QIGSKRLK-VQLKRDRNNPY 508 (510)
T ss_pred hhccccce-EEeeeccCCCC
Confidence 99999999 99987765543
No 11
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-34 Score=275.21 Aligned_cols=233 Identities=22% Similarity=0.360 Sum_probs=209.8
Q ss_pred ccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcCCC--CCc
Q 017846 84 KDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS--QGK 161 (365)
Q Consensus 84 ~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~--~gk 161 (365)
.++++..|++.|+.+|+|++++||+|. | | + |||||+|.+ +. ||++ |++.+|+. .|+
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--s-l---------gy~yvnf~~-~~------da~~--A~~~~n~~~~~~~ 65 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--S-L---------GYAYVNFQQ-PA------DAER--ALDTMNFDVLKGK 65 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C--c-c---------ceEEEecCC-HH------HHHH--HHHHcCCcccCCc
Confidence 788999999999999999999999999 7 7 7 999999999 77 8999 99999999 999
Q ss_pred ccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCc
Q 017846 162 RRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGT 240 (365)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~ 240 (365)
+ +|++|+++++.. |||.||+++++..+|.++|+.||.|++|++..|...++|| ||+|++++.|.+|++ +||.
T Consensus 66 ~---~rim~s~rd~~~---~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ 138 (369)
T KOG0123|consen 66 P---IRIMWSQRDPSL---VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGM 138 (369)
T ss_pred E---EEeehhccCCce---eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCc
Confidence 9 999999987765 9999999999999999999999999999999999889999 999999999999999 9999
Q ss_pred eeCCeeEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEE
Q 017846 241 MLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIA 319 (365)
Q Consensus 241 ~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~a 319 (365)
.+.|+.|.|...........+... .......+++.|++...+++.|..+|.. ||.|.++.++++. +.++||+
T Consensus 139 ll~~kki~vg~~~~~~er~~~~~~------~~~~~t~v~vk~~~~~~~~~~l~~~f~~-~g~i~s~~v~~~~~g~~~~~g 211 (369)
T KOG0123|consen 139 LLNGKKIYVGLFERKEEREAPLGE------YKKRFTNVYVKNLEEDSTDEELKDLFSA-YGSITSVAVMRDSIGKSKGFG 211 (369)
T ss_pred ccCCCeeEEeeccchhhhcccccc------hhhhhhhhheeccccccchHHHHHhhcc-cCcceEEEEeecCCCCCCCcc
Confidence 999999999887543222211111 1233468999999999999999999999 6999999999987 6789999
Q ss_pred EEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 017846 320 FVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKT 353 (365)
Q Consensus 320 fV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~ 353 (365)
||.|+++++|..|+. ||+..+.+..+. |..+..
T Consensus 212 fv~f~~~e~a~~av~~l~~~~~~~~~~~-V~~aqk 245 (369)
T KOG0123|consen 212 FVNFENPEDAKKAVETLNGKIFGDKELY-VGRAQK 245 (369)
T ss_pred ceeecChhHHHHHHHhccCCcCCcccee-eccccc
Confidence 999999999999999 999999999999 887766
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-33 Score=248.04 Aligned_cols=232 Identities=22% Similarity=0.281 Sum_probs=191.5
Q ss_pred cchhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhh
Q 017846 72 DNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTR 151 (365)
Q Consensus 72 ~~~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a 151 (365)
+..+.+++|+|+-+.+++-|..||+++|+|.+|+|+.|. . + |.... .
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e------~---------~---v~wa~------------~--- 50 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE------L---------K---VNWAT------------A--- 50 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh------h---------c---ccccc------------C---
Confidence 445678899999999999999999999999999999982 2 1 11111 1
Q ss_pred hhhcCCCCCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHH
Q 017846 152 RKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEE 229 (365)
Q Consensus 152 ~~~~~~~~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~ 229 (365)
- ..+.++ .....-.+||+.|.++++-++|++.|.+||+|.+++|++|..+ +||||||.|-..+
T Consensus 51 p----~nQsk~-----------t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~ 115 (321)
T KOG0148|consen 51 P----GNQSKP-----------TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE 115 (321)
T ss_pred c----ccCCCC-----------ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchH
Confidence 0 001222 1112446999999999999999999999999999999999864 7999999999999
Q ss_pred HHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCCCCCCchh----hcccccEEEeeCCCCCCCHHHHHHHhhhcCCceE
Q 017846 230 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDE----REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ 304 (365)
Q Consensus 230 ~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~----~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~ 304 (365)
+|+.||. |||+-|++|.|+-.|+.+.+...+.. +..-++ ..+..++|||+|++..++|++|++.|++ ||.|.
T Consensus 116 dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~--~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~ 192 (321)
T KOG0148|consen 116 DAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGK--PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP-FGPIQ 192 (321)
T ss_pred HHHHHHHHhCCeeeccceeeccccccCccccCCC--CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhccc-CCcce
Confidence 9999998 99999999999999997655333321 111111 2567799999999999999999999999 59999
Q ss_pred EEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCCCC
Q 017846 305 RLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPVRPRA 359 (365)
Q Consensus 305 ~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~~~r~ 359 (365)
.|+|.++++ ||||.|++.|+|.+||. +|+.+++|..++ ++|.|.......
T Consensus 193 EVRvFk~qG----YaFVrF~tkEaAahAIv~mNntei~G~~Vk-CsWGKe~~~~~~ 243 (321)
T KOG0148|consen 193 EVRVFKDQG----YAFVRFETKEAAAHAIVQMNNTEIGGQLVR-CSWGKEGDDGIN 243 (321)
T ss_pred EEEEecccc----eEEEEecchhhHHHHHHHhcCceeCceEEE-EeccccCCCCCC
Confidence 999999874 99999999999999999 999999999999 999998765543
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=7.7e-33 Score=280.29 Aligned_cols=250 Identities=14% Similarity=0.134 Sum_probs=188.4
Q ss_pred hhhhhcCCccccccHHHHHHHHhcc------------CCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCc
Q 017846 74 HMERKMGESFKDCEMRDLVDMLSKL------------NPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGT 141 (365)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~------------G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~ 141 (365)
.+..++|+|+|++++++|+++|+++ +.|..+.+.+ . + |||||+|.+ .+
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~------~-k---------g~afVeF~~-~e--- 234 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK------E-K---------NFAFLEFRT-VE--- 234 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC------C-C---------CEEEEEeCC-HH---
Confidence 4567899999999999999999985 3444444433 3 5 999999999 55
Q ss_pred ccccccchhhhhhcCCC--CCcccccccCC--cc---------------------------ccCCCCCcEEEEcCCCCCC
Q 017846 142 ANTNGHTTTRRKRNGYS--QGKRRMNCRTS--NA---------------------------QQDEVIRRTVYVSDIDQQV 190 (365)
Q Consensus 142 ~~~da~~~~a~~~~~~~--~gk~~~~~~~~--~~---------------------------~~~~~~~~~lfV~nLp~~~ 190 (365)
+|.. |+. +++. .|++ +.++.. +. .......++|||+|||..+
T Consensus 235 ---~A~~--Al~-l~g~~~~g~~-l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 307 (509)
T TIGR01642 235 ---EATF--AMA-LDSIIYSNVF-LKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYL 307 (509)
T ss_pred ---HHhh--hhc-CCCeEeeCce-eEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 5877 874 4443 4544 212100 00 0011234689999999999
Q ss_pred cHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCC----
Q 017846 191 TEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTF---- 263 (365)
Q Consensus 191 te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~~---- 263 (365)
++++|+++|+.||.|..+.|+.+.. .++|||||+|.+.++|..|++ |+|..|.|+.|.|.++...........
T Consensus 308 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~ 387 (509)
T TIGR01642 308 GEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGM 387 (509)
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccc
Confidence 9999999999999999999999864 479999999999999999998 999999999999999854322111000
Q ss_pred -----CCC-----CchhhcccccEEEeeCCCCCC----------CHHHHHHHhhhcCCceEEEEEeccC-----CCcceE
Q 017846 264 -----LPR-----SEDEREMCSRTIYCTNIDKKV----------TQGDIKLFFESVCGEVQRLRLLGDY-----QHSTRI 318 (365)
Q Consensus 264 -----~~~-----~~~~~~~~~~~l~V~nLp~~~----------te~~L~~~F~~~~G~I~~v~i~~d~-----~~~kg~ 318 (365)
.+. .......+.++|+|.||.... ..++|+++|++ ||.|..|.|+++. +.+.|+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~-~G~v~~v~i~~~~~~~~~~~~~G~ 466 (509)
T TIGR01642 388 APVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK-YGPLINIVIPRPNGDRNSTPGVGK 466 (509)
T ss_pred cccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh-cCCeeEEEeeccCcCCCcCCCcce
Confidence 000 000113356889999996421 23689999999 6999999998752 245789
Q ss_pred EEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 319 AFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 319 afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
|||+|.+.++|.+|+. |||..|+|+.|. |.|..
T Consensus 467 ~fV~F~~~e~A~~A~~~lnGr~~~gr~v~-~~~~~ 500 (509)
T TIGR01642 467 VFLEYADVRSAEKAMEGMNGRKFNDRVVV-AAFYG 500 (509)
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCeEEE-EEEeC
Confidence 9999999999999999 999999999999 88854
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.6e-33 Score=265.76 Aligned_cols=254 Identities=20% Similarity=0.295 Sum_probs=204.3
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
..+|++|+|+++..+|.++||.+|+|..|.|..++.++.+ | |||||+|.- .+ |+++ |+...
T Consensus 7 TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~-R---------GfgfVtFam-~E------D~qr--A~~e~ 67 (678)
T KOG0127|consen 7 TLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEK-R---------GFGFVTFAM-EE------DVQR--ALAET 67 (678)
T ss_pred eEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccc-c---------Cccceeeeh-Hh------HHHH--HHHHh
Confidence 4678999999999999999999999999999999999888 8 999999998 67 8999 88877
Q ss_pred CCC--CCcccccccCCcccc--------------------------C--CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCe
Q 017846 156 GYS--QGKRRMNCRTSNAQQ--------------------------D--EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV 205 (365)
Q Consensus 156 ~~~--~gk~~~~~~~~~~~~--------------------------~--~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i 205 (365)
... .|+. +++..+.+ . ....-.|.|+|||+.+.+.+|+.+|+.||.|
T Consensus 68 ~~~kf~Gr~---l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V 144 (678)
T KOG0127|consen 68 EQSKFEGRI---LNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKV 144 (678)
T ss_pred hcCccccee---cccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceE
Confidence 774 5655 22222211 0 0113459999999999999999999999999
Q ss_pred eEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCCC---------------------CC
Q 017846 206 VDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVN---------------------PT 262 (365)
Q Consensus 206 ~~v~i~~d~~~-~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~---------------------~~ 262 (365)
.+|.|++.+.. -.|||||+|....+|..||+ +|+..|.||+|-|.||-....-.. +.
T Consensus 145 ~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~ 224 (678)
T KOG0127|consen 145 VEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADE 224 (678)
T ss_pred EEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhccccc
Confidence 99999987643 47999999999999999999 999999999999999843110000 00
Q ss_pred -----C-------CCCCc-------------------------------------------hhhcccccEEEeeCCCCCC
Q 017846 263 -----F-------LPRSE-------------------------------------------DEREMCSRTIYCTNIDKKV 287 (365)
Q Consensus 263 -----~-------~~~~~-------------------------------------------~~~~~~~~~l~V~nLp~~~ 287 (365)
+ ...+. ++.....++|||+|||+.+
T Consensus 225 d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~ 304 (678)
T KOG0127|consen 225 DDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDT 304 (678)
T ss_pred ccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccc
Confidence 0 00000 0001134799999999999
Q ss_pred CHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-h-----CC-ceeCCeeeEEeecCCC
Q 017846 288 TQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-C-----SG-AVLGSLPIRLVSPSKT 353 (365)
Q Consensus 288 te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-l-----ng-~~l~g~~l~~V~~a~~ 353 (365)
|+++|.+.|++| |.|.++.|+.++ +.++|.|||.|.+..+|..||. . .| ..|.||.|. |..+-+
T Consensus 305 tEEel~~~fskF-G~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk-v~~Av~ 377 (678)
T KOG0127|consen 305 TEEELKEHFSKF-GEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK-VTLAVT 377 (678)
T ss_pred cHHHHHHHHHhh-ccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe-eeeccc
Confidence 999999999995 999999998876 7899999999999999999998 4 23 678999999 887643
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.1e-33 Score=280.62 Aligned_cols=158 Identities=14% Similarity=0.270 Sum_probs=137.9
Q ss_pred hhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhh
Q 017846 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (365)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~ 153 (365)
....++|+|+|++++++|+++|++||+|.+|+|++|+.|+++ + |||||+|.+ .+ +|.. |++
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgks-k---------GfAFVeF~s-~e------~A~~--Ai~ 167 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKH-K---------GFAFVEYEV-PE------AAQL--ALE 167 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCc-C---------CeEEEEeCc-HH------HHHH--HHH
Confidence 346788999999999999999999999999999999999998 8 999999999 56 6888 999
Q ss_pred hcCCC--CCcccccccCCcccc-------------CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--C
Q 017846 154 RNGYS--QGKRRMNCRTSNAQQ-------------DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--S 216 (365)
Q Consensus 154 ~~~~~--~gk~~~~~~~~~~~~-------------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~ 216 (365)
.+++. .|+. +++.++.. .....++|||+|||+++++++|+++|+.||.|.+++|.+|+. +
T Consensus 168 ~lnG~~i~GR~---IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgk 244 (612)
T TIGR01645 168 QMNGQMLGGRN---IKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG 244 (612)
T ss_pred hcCCeEEecce---eeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC
Confidence 88876 6776 33322211 112346899999999999999999999999999999999874 4
Q ss_pred CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 217 VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 217 ~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
+||||||+|.+.++|.+|++ ||+..++|+.|+|.++.
T Consensus 245 sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 79999999999999999998 99999999999998865
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=5.6e-31 Score=251.70 Aligned_cols=170 Identities=22% Similarity=0.387 Sum_probs=149.7
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
......++|||+|||+++|+++|+++|+.||.|++|+|+.|+. +++|||||+|.++++|++|++ |++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3445678999999999999999999999999999999999875 479999999999999999998 9999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHH
Q 017846 250 LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAE 327 (365)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~ 327 (365)
.++++... .....+|||.|||..+++++|+++|++ ||.|..|+|++++ ++++|||||+|.+.+
T Consensus 182 ~~a~p~~~--------------~~~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 182 SYARPGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred eccccccc--------------ccccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 99753210 112368999999999999999999999 6999999999886 678999999999999
Q ss_pred HHHHHHH-hCCceeCC--eeeEEeecCCCCCCCC
Q 017846 328 SAIAALN-CSGAVLGS--LPIRLVSPSKTPVRPR 358 (365)
Q Consensus 328 ~A~~Al~-lng~~l~g--~~l~~V~~a~~~~~~r 358 (365)
+|.+||+ ||+..+.+ ++|+ |.+++.....+
T Consensus 247 ~A~~Ai~~lng~~~~g~~~~l~-V~~a~~~~~~~ 279 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGSQPLT-VRLAEEHGKAK 279 (346)
T ss_pred HHHHHHHHhCCCccCCCceeEE-EEECCcccccc
Confidence 9999999 99998866 7899 99988764443
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1e-29 Score=255.38 Aligned_cols=177 Identities=25% Similarity=0.345 Sum_probs=151.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
..++|||+|||+++++++|+++|.+||.|.+|+|+.|+. +++|||||+|.+.++|.+|++ |||..+.|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 457899999999999999999999999999999999874 479999999999999999998 99999999999998754
Q ss_pred CCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHH
Q 017846 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 331 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~ 331 (365)
...... ..... ........++|||+|||+.+++++|+++|++ ||.|.+|+|.++. +.++|||||+|.+.++|.+
T Consensus 186 ~~p~a~--~~~~~-~~~~~~~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 186 NMPQAQ--PIIDM-VQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccc--ccccc-ccccccccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 221100 00000 0111234579999999999999999999999 6999999999986 5789999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCCCCCCC
Q 017846 332 ALN-CSGAVLGSLPIRLVSPSKTPVRPR 358 (365)
Q Consensus 332 Al~-lng~~l~g~~l~~V~~a~~~~~~r 358 (365)
|++ ||+..|+|+.|+ |.++.++..+.
T Consensus 262 AI~amNg~elgGr~Lr-V~kAi~pP~~~ 288 (612)
T TIGR01645 262 AIASMNLFDLGGQYLR-VGKCVTPPDAL 288 (612)
T ss_pred HHHHhCCCeeCCeEEE-EEecCCCcccc
Confidence 999 999999999999 99998766554
No 18
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.6e-28 Score=237.38 Aligned_cols=163 Identities=23% Similarity=0.436 Sum_probs=145.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
...+|||+|||.++++++|+++|++||.|.+|+|++|+. .++|||||+|.+.++|.+||+ |+|..+.|++|+|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 357899999999999999999999999999999999874 479999999999999999998 99999999999999985
Q ss_pred CCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHH
Q 017846 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 331 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~ 331 (365)
+... .....+|||.|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|..
T Consensus 82 ~~~~--------------~~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 82 PSSD--------------SIKGANLYVSGLPKTMTQHELESIFSP-FGQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred cccc--------------ccccceEEECCccccCCHHHHHHHHhc-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 3210 123468999999999999999999999 5999999998875 5789999999999999999
Q ss_pred HHH-hCCceeCC--eeeEEeecCCCCC
Q 017846 332 ALN-CSGAVLGS--LPIRLVSPSKTPV 355 (365)
Q Consensus 332 Al~-lng~~l~g--~~l~~V~~a~~~~ 355 (365)
|++ |||..+.| .+|. |.|+..+.
T Consensus 147 ai~~l~g~~~~g~~~~i~-v~~a~~~~ 172 (352)
T TIGR01661 147 AIKTLNGTTPSGCTEPIT-VKFANNPS 172 (352)
T ss_pred HHHHhCCCccCCCceeEE-EEECCCCC
Confidence 999 99999877 6788 99987665
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=8.8e-28 Score=240.24 Aligned_cols=175 Identities=28% Similarity=0.369 Sum_probs=148.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||..+++++|+++|++||.|.+|+|+.|+. +++|||||+|.+.++|.+||.++|..+.|++|.|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34567999999999999999999999999999999999874 4799999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHH
Q 017846 253 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAI 330 (365)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~ 330 (365)
............. .....+..++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|.
T Consensus 166 ~~~~~~~~~~~~~--~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 166 QAEKNRAAKAATH--QPGDIPNFLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred chhhhhhhhcccc--cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 5321111000000 0000123689999999999999999999999 5999999999886 478999999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeecCCC
Q 017846 331 AALN-CSGAVLGSLPIRLVSPSKT 353 (365)
Q Consensus 331 ~Al~-lng~~l~g~~l~~V~~a~~ 353 (365)
+|+. |||..|.|++|+ |.|+..
T Consensus 243 ~A~~~l~g~~i~g~~i~-v~~a~~ 265 (457)
T TIGR01622 243 EALEVMNGFELAGRPIK-VGYAQD 265 (457)
T ss_pred HHHHhcCCcEECCEEEE-EEEccC
Confidence 9999 999999999999 999764
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=3.1e-28 Score=232.83 Aligned_cols=161 Identities=21% Similarity=0.289 Sum_probs=140.0
Q ss_pred chhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhh
Q 017846 73 NHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRR 152 (365)
Q Consensus 73 ~~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~ 152 (365)
.....++++|+|++++++|+++|++||+|.+|+|++|+.|+++ + |||||+|.+ ++ +|.. |+
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~s-r---------GyaFVeF~~-~e------~A~~--Ai 166 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYS-F---------GYAFVDFGS-EA------DSQR--AI 166 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCcc-C---------cEEEEEEcc-HH------HHHH--HH
Confidence 3457888999999999999999999999999999999999999 8 999999999 56 6888 99
Q ss_pred hhcCCC--CCcccccccCCccc--cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeC
Q 017846 153 KRNGYS--QGKRRMNCRTSNAQ--QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFT 226 (365)
Q Consensus 153 ~~~~~~--~gk~~~~~~~~~~~--~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~ 226 (365)
+.++.. .+++ +++.++. ......++|||+|||+++|+++|+++|++||.|+.++|++|+. +++|||||+|.
T Consensus 167 ~~LnG~~l~gr~---i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~ 243 (346)
T TIGR01659 167 KNLNGITVRNKR---LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFN 243 (346)
T ss_pred HHcCCCccCCce---eeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEEC
Confidence 888776 6666 4444332 2334567899999999999999999999999999999999874 46899999999
Q ss_pred CHHHHHHHHH-hCCceeCC--eeEEEeeCCCC
Q 017846 227 DEEGARAALS-LAGTMLGF--YPVRVLPSKTA 255 (365)
Q Consensus 227 ~~~~A~~Al~-l~g~~i~g--~~l~V~~a~~~ 255 (365)
+.++|++||+ ||+..+.+ ++|+|.+++..
T Consensus 244 ~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 244 KREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 9999999999 99999875 79999998653
No 21
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.5e-28 Score=234.65 Aligned_cols=257 Identities=19% Similarity=0.285 Sum_probs=208.1
Q ss_pred hhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcC
Q 017846 77 RKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNG 156 (365)
Q Consensus 77 ~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~ 156 (365)
.++-+|+-++|.++|.++|+.||+|.||+|++|... + + || ||.|.+ +. .|.. |++.+|
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~-k---------g~-FV~f~~-e~------~a~~--ai~~~n 136 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--S-K---------GY-FVQFES-EE------SAKK--AIEKLN 136 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--c-e---------ee-EEEeCC-HH------HHHH--HHHHhc
Confidence 566788889999999999999999999999999887 5 6 99 999999 55 4777 999988
Q ss_pred CC--CCcccccccCCccc-------cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEeC
Q 017846 157 YS--QGKRRMNCRTSNAQ-------QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFT 226 (365)
Q Consensus 157 ~~--~gk~~~~~~~~~~~-------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F~ 226 (365)
+. .|+..+........ .....-.++||.+++.+++++.|..+|..||.|.++.++.+.. .++||+||.|.
T Consensus 137 g~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~ 216 (369)
T KOG0123|consen 137 GMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFE 216 (369)
T ss_pred CcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeec
Confidence 87 56652211111111 1112234699999999999999999999999999999999874 47999999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCC----CCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCC
Q 017846 227 DEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPV----NPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG 301 (365)
Q Consensus 227 ~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~----~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G 301 (365)
++++|..|++ +++..+.+..+.|..+....... .+.......+........|||.||+..++.+.|+.+|+. ||
T Consensus 217 ~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~-~G 295 (369)
T KOG0123|consen 217 NPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSS-FG 295 (369)
T ss_pred ChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhc-cc
Confidence 9999999999 99999999999999986421100 000011111222455678999999999999999999999 69
Q ss_pred ceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCC
Q 017846 302 EVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPVRP 357 (365)
Q Consensus 302 ~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~~~ 357 (365)
.|.+++|+.+. +.++||+||+|.+.++|.+|+. +|+..+.+++|. |.+++....+
T Consensus 296 eI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~-vav~qr~~~r 352 (369)
T KOG0123|consen 296 EITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLY-VAVAQRKEDR 352 (369)
T ss_pred ceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchh-hhHHhhhccc
Confidence 99999999876 7899999999999999999999 999999999999 9988744333
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.2e-27 Score=209.84 Aligned_cols=159 Identities=21% Similarity=0.322 Sum_probs=140.8
Q ss_pred hhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhh
Q 017846 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (365)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~ 153 (365)
|.-.++|.|+-+.+-++|++.|.+||+|.+++|+||..|++| + |||||.|.. .. ||+. |+.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~Ks-K---------GYgFVSf~~-k~------dAEn--AI~ 122 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKS-K---------GYGFVSFPN-KE------DAEN--AIQ 122 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcc-c---------ceeEEeccc-hH------HHHH--HHH
Confidence 556788999999999999999999999999999999999999 9 999999999 55 6999 999
Q ss_pred hcCCC-CCcccccccCCccccC------------------CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC
Q 017846 154 RNGYS-QGKRRMNCRTSNAQQD------------------EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP 214 (365)
Q Consensus 154 ~~~~~-~gk~~~~~~~~~~~~~------------------~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~ 214 (365)
.||+. -|++. +|..|+.+. ...+++||||||+.-++|++|++.|++||.|.+||+.+++
T Consensus 123 ~MnGqWlG~R~--IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q 200 (321)
T KOG0148|consen 123 QMNGQWLGRRT--IRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ 200 (321)
T ss_pred HhCCeeeccce--eeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc
Confidence 99998 56652 444444332 3356789999999999999999999999999999999987
Q ss_pred CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCC
Q 017846 215 NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (365)
Q Consensus 215 ~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~ 257 (365)
||+||.|+++|.|.+||. +|+.+|.|..++|.|.+....
T Consensus 201 ----GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 201 ----GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred ----ceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 799999999999999997 999999999999999876543
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.1e-27 Score=221.66 Aligned_cols=169 Identities=24% Similarity=0.356 Sum_probs=146.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCce-eCC--eeE
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTM-LGF--YPV 247 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~-i~g--~~l 247 (365)
.+....++|||-||..++|.||+++|++||.|.+|.|++|+.+ ++|||||.|.+.++|.+|+. |+... +.| .+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3455668999999999999999999999999999999999965 79999999999999999997 76655 655 589
Q ss_pred EEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCH
Q 017846 248 RVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMA 326 (365)
Q Consensus 248 ~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~ 326 (365)
.|++++.. .++....+.|||+-|++.+||.+++++|++ ||.|++|.|++|. +.+||||||+|.+.
T Consensus 110 qvk~Ad~E-------------~er~~~e~KLFvg~lsK~~te~evr~iFs~-fG~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 110 QVKYADGE-------------RERIVEERKLFVGMLSKQCTENEVREIFSR-FGHIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred eecccchh-------------hhccccchhhhhhhccccccHHHHHHHHHh-hCccchhhheecccccccceeEEEEehH
Confidence 99998522 222234578999999999999999999999 5999999999997 78999999999999
Q ss_pred HHHHHHHH-hCCce-eCC--eeeEEeecCCCCCCC
Q 017846 327 ESAIAALN-CSGAV-LGS--LPIRLVSPSKTPVRP 357 (365)
Q Consensus 327 ~~A~~Al~-lng~~-l~g--~~l~~V~~a~~~~~~ 357 (365)
+.|..||+ |||.. +.| .+|. |+|+.+...+
T Consensus 176 e~A~~Aika~ng~~tmeGcs~PLV-VkFADtqkdk 209 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGCSQPLV-VKFADTQKDK 209 (510)
T ss_pred HHHHHHHHhhccceeeccCCCceE-EEecccCCCc
Confidence 99999999 99964 555 4798 9999987433
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=6.3e-25 Score=222.49 Aligned_cols=175 Identities=22% Similarity=0.262 Sum_probs=139.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhC------------CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCce
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTC------------GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTM 241 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~------------G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~ 241 (365)
.....++|||||||+.+|+++|+++|..| +.|..+.+.. .+|||||+|.+.++|..||.|+|..
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~----~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK----EKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC----CCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 34456889999999999999999999975 3455555543 3589999999999999999999999
Q ss_pred eCCeeEEEeeCCCCCCCCCCC-----CCC----------CCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEE
Q 017846 242 LGFYPVRVLPSKTAIAPVNPT-----FLP----------RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL 306 (365)
Q Consensus 242 i~g~~l~V~~a~~~~~~~~~~-----~~~----------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v 306 (365)
+.|++|.|............. ..+ ..........++|||+|||..+++++|+++|+. ||.|..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES-FGDLKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEE
Confidence 999999998654322110000 000 000011234579999999999999999999999 5999999
Q ss_pred EEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 017846 307 RLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 307 ~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~ 354 (365)
.|+++. +.++|||||+|.+.++|..|+. |||..|+|++|. |.++...
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~-v~~a~~~ 375 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLH-VQRACVG 375 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEE-EEECccC
Confidence 999875 6789999999999999999999 999999999999 9997543
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.8e-25 Score=202.55 Aligned_cols=252 Identities=18% Similarity=0.298 Sum_probs=196.5
Q ss_pred hhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
...++|.++|+.-++.|+..|..||+|.||.+..|+.|+++ + |||||+|.- ++ .|+. |++.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kH-K---------gFAFVEYEv-PE------aAqL--AlEq 174 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKH-K---------GFAFVEYEV-PE------AAQL--ALEQ 174 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccc-c---------ceEEEEEeC-cH------HHHH--HHHH
Confidence 35577999999999999999999999999999999999999 8 999999999 66 5788 9999
Q ss_pred cCCC--CCcccccccCCcccc-------------CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CC
Q 017846 155 NGYS--QGKRRMNCRTSNAQQ-------------DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SV 217 (365)
Q Consensus 155 ~~~~--~gk~~~~~~~~~~~~-------------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~ 217 (365)
+|.. .||. +++-++.. +...-..|||..+.++++|+||+..|+.||+|..|.+.+++. ++
T Consensus 175 MNg~mlGGRN---iKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 175 MNGQMLGGRN---IKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 251 (544)
T ss_pred hccccccCcc---ccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCc
Confidence 9988 5555 44433332 222345699999999999999999999999999999999884 47
Q ss_pred ceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCC-------------------------------------
Q 017846 218 LRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPV------------------------------------- 259 (365)
Q Consensus 218 kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~------------------------------------- 259 (365)
||||||+|.+..+-..|+. ||-+.++|..|+|..+-++....
T Consensus 252 kGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg 331 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLG 331 (544)
T ss_pred cceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999998 99999999999997753211000
Q ss_pred ----------------------------------------CCC-------------C---------------------CC
Q 017846 260 ----------------------------------------NPT-------------F---------------------LP 265 (365)
Q Consensus 260 ----------------------------------------~~~-------------~---------------------~~ 265 (365)
.|. + .|
T Consensus 332 ~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqp 411 (544)
T KOG0124|consen 332 TVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQP 411 (544)
T ss_pred ccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcc
Confidence 000 0 00
Q ss_pred CCchh-------------------------hcccccEEEeeCC--CCCCC---HHHHHHHhhhcCCceEEEEEeccCCCc
Q 017846 266 RSEDE-------------------------REMCSRTIYCTNI--DKKVT---QGDIKLFFESVCGEVQRLRLLGDYQHS 315 (365)
Q Consensus 266 ~~~~~-------------------------~~~~~~~l~V~nL--p~~~t---e~~L~~~F~~~~G~I~~v~i~~d~~~~ 315 (365)
...+. +...++.+.++|+ |.+++ +.+|++.+++ ||.|.+|.|...+...
T Consensus 412 kl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgK-fG~V~rViI~nekq~e 490 (544)
T KOG0124|consen 412 KLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGK-FGAVNRVIIYNEKQGE 490 (544)
T ss_pred cccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhc-ccceeEEEEEeccccc
Confidence 00000 0123557778887 44444 4789999999 5999999998765211
Q ss_pred ------ceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 316 ------TRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 316 ------kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
----||+|....++.+|.+ |+|+.|+|+++. ...
T Consensus 491 ~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv-AE~ 531 (544)
T KOG0124|consen 491 EEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV-AEV 531 (544)
T ss_pred ccchhhhheeeeeechhhHHHHHHHhhccceecCceee-hhh
Confidence 2246999999999999999 999999999987 443
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=4e-25 Score=221.95 Aligned_cols=161 Identities=22% Similarity=0.215 Sum_probs=137.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeC-CeeEEEe
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVL 250 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~-g~~l~V~ 250 (365)
.+...++|||+|||++++|++|+++|++||.|.+++|++|. +.+||||||+|.++++|++||+ ||+..+. |+.|.|.
T Consensus 54 ~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 54 QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 34456899999999999999999999999999999999985 4589999999999999999999 9999985 7888777
Q ss_pred eCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc---CCCcceEEEEEeCCHH
Q 017846 251 PSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---YQHSTRIAFVEFAMAE 327 (365)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d---~~~~kg~afV~F~~~~ 327 (365)
++. ..++|||+|||..+++++|++.|++++..+..+.+... .++++|||||+|.+++
T Consensus 134 ~S~--------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~e 193 (578)
T TIGR01648 134 ISV--------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHR 193 (578)
T ss_pred ccc--------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHH
Confidence 652 13789999999999999999999995334665555432 3578999999999999
Q ss_pred HHHHHHH-hCC--ceeCCeeeEEeecCCCCC
Q 017846 328 SAIAALN-CSG--AVLGSLPIRLVSPSKTPV 355 (365)
Q Consensus 328 ~A~~Al~-lng--~~l~g~~l~~V~~a~~~~ 355 (365)
+|..|+. |+. ..+.|+.|. |.|+.+..
T Consensus 194 dAa~AirkL~~gki~l~Gr~I~-VdwA~p~~ 223 (578)
T TIGR01648 194 AAAMARRKLMPGRIQLWGHVIA-VDWAEPEE 223 (578)
T ss_pred HHHHHHHHhhccceEecCceEE-EEeecccc
Confidence 9999998 653 468999999 99987654
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=3e-25 Score=218.73 Aligned_cols=246 Identities=20% Similarity=0.290 Sum_probs=190.3
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCe-EEeeecccCCCCcccccccchhhhhh
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGF-GYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~Gf-gFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
...+++|+..+..++|.++|..||+|..+-+++ . |- ++|.|.. +. +|.. |++.
T Consensus 387 vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~--------------G~~aiv~fl~-p~------eAr~--Afrk 440 (725)
T KOG0110|consen 387 VILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---G--------------GTGAIVEFLN-PL------EARK--AFRK 440 (725)
T ss_pred eeeeccCccccccHHHHHHhhcccccceeecCc---c--------------cceeeeeecC-cc------chHH--HHHH
Confidence 445699999999999999999999999994442 1 32 6788888 55 5777 7877
Q ss_pred cCCCCCcc---ccccc-----CCccc------------------------------cC------------CC-CCcEEEE
Q 017846 155 NGYSQGKR---RMNCR-----TSNAQ------------------------------QD------------EV-IRRTVYV 183 (365)
Q Consensus 155 ~~~~~gk~---~~~~~-----~~~~~------------------------------~~------------~~-~~~~lfV 183 (365)
+.|...+. ++.+. ...++ .. .. ...+|||
T Consensus 441 laysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfv 520 (725)
T KOG0110|consen 441 LAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFV 520 (725)
T ss_pred hchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhh
Confidence 77762221 11111 00000 00 00 1123999
Q ss_pred cCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC-----CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCC
Q 017846 184 SDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-----VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (365)
Q Consensus 184 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~-----~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~ 257 (365)
.||+++++.++|..+|...|.|.++.|...+.. |.|||||+|.+.++|..|++ |+|+.+.|+.|.|+++.....
T Consensus 521 kNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~ 600 (725)
T KOG0110|consen 521 KNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPA 600 (725)
T ss_pred hcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccc
Confidence 999999999999999999999999988875521 57999999999999999999 999999999999999862111
Q ss_pred CCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-
Q 017846 258 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN- 334 (365)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~- 334 (365)
... .+. .........|.|+|||+..+-.+++.+|.. ||.|.+|+|+... +.++|||||.|.++.+|.+|+.
T Consensus 601 ~~~---gK~--~~~kk~~tKIlVRNipFeAt~rEVr~LF~a-FGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 601 STV---GKK--KSKKKKGTKILVRNIPFEATKREVRKLFTA-FGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccc---ccc--cccccccceeeeeccchHHHHHHHHHHHhc-ccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 111 111 111223678999999999999999999999 5999999998763 4679999999999999999999
Q ss_pred hCCceeCCeeeEEeecCCCC
Q 017846 335 CSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 335 lng~~l~g~~l~~V~~a~~~ 354 (365)
|.++.|.||+|. +.|++.-
T Consensus 675 l~STHlyGRrLV-LEwA~~d 693 (725)
T KOG0110|consen 675 LGSTHLYGRRLV-LEWAKSD 693 (725)
T ss_pred hcccceechhhh-eehhccc
Confidence 999999999999 9998754
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=8.6e-26 Score=189.19 Aligned_cols=168 Identities=26% Similarity=0.348 Sum_probs=147.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
....+||||||+..++++.|.++|-+.|.|+.+++++|+.+ .+|||||+|.++++|+-|++ ||...+-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 35678999999999999999999999999999999999854 59999999999999999999 9999999999999997
Q ss_pred CCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEE-EEeccC--CCcceEEEEEeCCHHHH
Q 017846 253 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL-RLLGDY--QHSTRIAFVEFAMAESA 329 (365)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v-~i~~d~--~~~kg~afV~F~~~~~A 329 (365)
... ......+.+|||+||++.++|..|++.|+.| |.+.+. +|++++ +.++|||||.|.+.+.+
T Consensus 87 s~~-------------~~nl~vganlfvgNLd~~vDe~~L~dtFsaf-G~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 87 SAH-------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAF-GVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred ccc-------------cccccccccccccccCcchhHHHHHHHHHhc-cccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 411 1112234789999999999999999999985 988764 677776 58999999999999999
Q ss_pred HHHHH-hCCceeCCeeeEEeecCCCCCCCC
Q 017846 330 IAALN-CSGAVLGSLPIRLVSPSKTPVRPR 358 (365)
Q Consensus 330 ~~Al~-lng~~l~g~~l~~V~~a~~~~~~r 358 (365)
.+|+. +||..+..+++. |+++.....+-
T Consensus 153 d~ai~s~ngq~l~nr~it-v~ya~k~~~kg 181 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCNRPIT-VSYAFKKDTKG 181 (203)
T ss_pred HHHHHHhccchhcCCceE-EEEEEecCCCc
Confidence 99999 999999999999 99988765553
No 29
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.7e-25 Score=195.45 Aligned_cols=169 Identities=22% Similarity=0.406 Sum_probs=149.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
.....+|.|.-||..+|+++|+.+|...|+|++|++++|+- .+.|||||.|-++++|++|+. |||..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34556799999999999999999999999999999999994 579999999999999999998 999999999999999
Q ss_pred CCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHH
Q 017846 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESA 329 (365)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A 329 (365)
+++ .... .....|||.+||+.+|..+|.++|++ ||.|.--+|+.|. +.+||.+||.|..+.+|
T Consensus 118 ARP-----------Ss~~---Ik~aNLYvSGlPktMtqkelE~iFs~-fGrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 118 ARP-----------SSDS---IKDANLYVSGLPKTMTQKELEQIFSP-FGRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred ccC-----------Chhh---hcccceEEecCCccchHHHHHHHHHH-hhhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 863 2222 23468999999999999999999999 5999988998887 67999999999999999
Q ss_pred HHHHH-hCCceeCC--eeeEEeecCCCCCCCCC
Q 017846 330 IAALN-CSGAVLGS--LPIRLVSPSKTPVRPRA 359 (365)
Q Consensus 330 ~~Al~-lng~~l~g--~~l~~V~~a~~~~~~r~ 359 (365)
..||. |||..--| .+|. |+|+..|..+..
T Consensus 183 e~AIk~lNG~~P~g~tepIt-VKFannPsq~t~ 214 (360)
T KOG0145|consen 183 EEAIKGLNGQKPSGCTEPIT-VKFANNPSQKTN 214 (360)
T ss_pred HHHHHhccCCCCCCCCCCeE-EEecCCcccccc
Confidence 99999 99987655 4799 999998866554
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=6.6e-24 Score=199.23 Aligned_cols=162 Identities=24% Similarity=0.280 Sum_probs=144.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-hCCceeC-CeeEEEe
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVL 250 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~-g~~l~V~ 250 (365)
+...+-||||.||.++.|++|.-+|++.|+|-+++|++|+ +.+||||||+|.+.+.|++|++ ||+++|. |+.|.|-
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 4567789999999999999999999999999999999997 4579999999999999999999 9999986 9999988
Q ss_pred eCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---CCcceEEEEEeCCHH
Q 017846 251 PSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMAE 327 (365)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~---~~~kg~afV~F~~~~ 327 (365)
-+. ..++|||+|+|+.+++++|++.|+++--.|..|.|+.+. .+.||||||+|.++.
T Consensus 160 ~Sv--------------------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~ 219 (506)
T KOG0117|consen 160 VSV--------------------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHR 219 (506)
T ss_pred Eee--------------------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecch
Confidence 863 248899999999999999999999963368888888754 579999999999999
Q ss_pred HHHHHHH--hCCc-eeCCeeeEEeecCCCCCCC
Q 017846 328 SAIAALN--CSGA-VLGSLPIRLVSPSKTPVRP 357 (365)
Q Consensus 328 ~A~~Al~--lng~-~l~g~~l~~V~~a~~~~~~ 357 (365)
.|..|.. ++|. .+-|..+. |.|+.+...+
T Consensus 220 ~Aa~aRrKl~~g~~klwgn~~t-VdWAep~~e~ 251 (506)
T KOG0117|consen 220 AAAMARRKLMPGKIKLWGNAIT-VDWAEPEEEP 251 (506)
T ss_pred hHHHHHhhccCCceeecCCcce-eeccCcccCC
Confidence 9999997 6664 68999999 9999987554
No 31
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=5.6e-24 Score=203.77 Aligned_cols=174 Identities=22% Similarity=0.274 Sum_probs=148.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~ 255 (365)
.||||++||++++.++|.++|+.+|.|..+.++.++++ +||||||+|.-.+++++|++ +++..+.|+.|+|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999976 59999999999999999998 9999999999999998754
Q ss_pred CCCCCCC----------CCCCCc--hhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEE
Q 017846 256 IAPVNPT----------FLPRSE--DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVE 322 (365)
Q Consensus 256 ~~~~~~~----------~~~~~~--~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~ 322 (365)
..+..-. .....+ .....+...|.|+|||+.+...+|+.+|+. ||.|..|.|++.. +...|||||+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~-~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSN-FGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhh-cceEEEEEcccCCCCCccceEEEE
Confidence 3322100 000000 111234678999999999999999999999 5999999999776 5556999999
Q ss_pred eCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 017846 323 FAMAESAIAALN-CSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 323 F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~ 354 (365)
|....+|..||+ +||..|.||+|- |.||-+.
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VA-VDWAV~K 196 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVA-VDWAVDK 196 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeE-Eeeeccc
Confidence 999999999999 999999999999 9998654
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.6e-24 Score=193.45 Aligned_cols=151 Identities=26% Similarity=0.441 Sum_probs=138.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~ 257 (365)
-+|||||||..+++.+|+.+|++||+|.+|.|+++ ||||+.++...|+.|+. |+|..|.|..|.|+-++..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEecccc--
Confidence 36999999999999999999999999999999975 99999999999999999 9999999999999998632
Q ss_pred CCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC
Q 017846 258 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 336 (365)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-ln 336 (365)
.....+|+|+|+.+.++.++|+..|++ ||.|..|+|.+| |+||.|+..++|..|+. ||
T Consensus 75 --------------sk~stkl~vgNis~tctn~ElRa~fe~-ygpviecdivkd------y~fvh~d~~eda~~air~l~ 133 (346)
T KOG0109|consen 75 --------------SKASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDIVKD------YAFVHFDRAEDAVEAIRGLD 133 (346)
T ss_pred --------------CCCccccccCCCCccccCHHHhhhhcc-cCCceeeeeecc------eeEEEEeeccchHHHHhccc
Confidence 234578999999999999999999999 799999999886 99999999999999999 99
Q ss_pred CceeCCeeeEEeecCCCCCCCCC
Q 017846 337 GAVLGSLPIRLVSPSKTPVRPRA 359 (365)
Q Consensus 337 g~~l~g~~l~~V~~a~~~~~~r~ 359 (365)
+.+|.|++++ |+.+-...+..+
T Consensus 134 ~~~~~gk~m~-vq~stsrlrtap 155 (346)
T KOG0109|consen 134 NTEFQGKRMH-VQLSTSRLRTAP 155 (346)
T ss_pred ccccccceee-eeeeccccccCC
Confidence 9999999999 999876665543
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.90 E-value=1.7e-23 Score=201.37 Aligned_cols=243 Identities=19% Similarity=0.218 Sum_probs=175.2
Q ss_pred cccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcCCC-CCc
Q 017846 83 FKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS-QGK 161 (365)
Q Consensus 83 ~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~-~gk 161 (365)
+-....++|.++|+.+|.|.+|+++.|+.++++ + |-|||+|.+..+ ... |+...+.. -|.
T Consensus 188 a~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rs-k---------gi~Yvef~D~~s-------Vp~--aiaLsGqrllg~ 248 (549)
T KOG0147|consen 188 ARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRS-K---------GIAYVEFCDEQS-------VPL--AIALSGQRLLGV 248 (549)
T ss_pred hhcCCchhHHHHHHhhcCcceeEeeccccchhh-c---------ceeEEEEecccc-------hhh--HhhhcCCcccCc
Confidence 344578999999999999999999999999999 8 999999998333 333 34222221 333
Q ss_pred ccccccCCcccc--------------CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEe
Q 017846 162 RRMNCRTSNAQQ--------------DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF 225 (365)
Q Consensus 162 ~~~~~~~~~~~~--------------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F 225 (365)
+ +-++...+.+ -..+-..||||||...+++++|+.+|++||.|+.|.++.|. +.++|||||+|
T Consensus 249 p-v~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f 327 (549)
T KOG0147|consen 249 P-VIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITF 327 (549)
T ss_pred e-eEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEE
Confidence 3 2222211111 01111229999999999999999999999999999999995 55799999999
Q ss_pred CCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCCC--CC--------------------------------CCCC----
Q 017846 226 TDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVN--PT--------------------------------FLPR---- 266 (365)
Q Consensus 226 ~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~--~~--------------------------------~~~~---- 266 (365)
.+.++|.+|++ |||.+|.|+.|+|..-........ .. ..+.
T Consensus 328 ~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~ 407 (549)
T KOG0147|consen 328 VNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAIS 407 (549)
T ss_pred ecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhh
Confidence 99999999998 999999999999865321100000 00 0000
Q ss_pred --------------------Cchhhc-------ccccEEEeeCCCCC--CC--------HHHHHHHhhhcCCceEEEEEe
Q 017846 267 --------------------SEDERE-------MCSRTIYCTNIDKK--VT--------QGDIKLFFESVCGEVQRLRLL 309 (365)
Q Consensus 267 --------------------~~~~~~-------~~~~~l~V~nLp~~--~t--------e~~L~~~F~~~~G~I~~v~i~ 309 (365)
...... .+..++.++|+=.. .| .+|+.+-+++ ||.|..|.|.
T Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k-~g~v~hi~vd 486 (549)
T KOG0147|consen 408 ALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGK-HGKVCHIFVD 486 (549)
T ss_pred HHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHh-cCCeeEEEEc
Confidence 000001 34556777776221 11 2678888898 5999888886
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 310 GDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 310 ~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
+. +-|+.||.|.+.+.|..|+. |||.+|.|+.|. ..+
T Consensus 487 ~n---s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~It-a~~ 524 (549)
T KOG0147|consen 487 KN---SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMIT-AKY 524 (549)
T ss_pred cC---CCceEEEecCcHHHHHHHHHHHhhhhhccceeE-EEE
Confidence 54 33899999999999999999 999999999999 666
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.8e-23 Score=191.65 Aligned_cols=177 Identities=26% Similarity=0.365 Sum_probs=151.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
.-+.||||.|.+++.|+.|+..|.+||.|.+|.+..|+- ++||||||+|+-++.|..|++ |||..++||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 456799999999999999999999999999999999995 479999999999999999999 99999999999998643
Q ss_pred CCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHH
Q 017846 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 331 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~ 331 (365)
.. +....... .-.+.....++|||..+.++++|+||+.+|+.| |.|.+|.+.+++ +..+||+|++|.+..+...
T Consensus 192 Nm--pQAQpiID-~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF-G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 192 NM--PQAQPIID-MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF-GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred CC--cccchHHH-HHHHHHHhhheEEeeecCCCccHHHHHHHHHhh-cceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 11 11000000 001124467899999999999999999999995 999999999987 4799999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCCCCCCC
Q 017846 332 ALN-CSGAVLGSLPIRLVSPSKTPVRPR 358 (365)
Q Consensus 332 Al~-lng~~l~g~~l~~V~~a~~~~~~r 358 (365)
|+. ||=+.++|..|+ |..+-+|+..-
T Consensus 268 AiasMNlFDLGGQyLR-VGk~vTPP~aL 294 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLR-VGKCVTPPDAL 294 (544)
T ss_pred HhhhcchhhcccceEe-cccccCCCchh
Confidence 999 999999999999 99888876653
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.3e-23 Score=185.47 Aligned_cols=192 Identities=21% Similarity=0.379 Sum_probs=155.8
Q ss_pred ccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCce-e
Q 017846 166 CRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTM-L 242 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~-i 242 (365)
++....+......++||||-|...-+|+|++.+|..||.|++|.+.+.+ +.+||||||.|.++.+|..||. |+|.. +
T Consensus 7 vkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTm 86 (371)
T KOG0146|consen 7 VKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTM 86 (371)
T ss_pred ccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccC
Confidence 3444444445578899999999999999999999999999999999977 5689999999999999999998 98875 4
Q ss_pred CC--eeEEEeeCCCCC----------------------------------------------------------------
Q 017846 243 GF--YPVRVLPSKTAI---------------------------------------------------------------- 256 (365)
Q Consensus 243 ~g--~~l~V~~a~~~~---------------------------------------------------------------- 256 (365)
.| ..|.|+++++..
T Consensus 87 pGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~ 166 (371)
T KOG0146|consen 87 PGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQM 166 (371)
T ss_pred CCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHH
Confidence 45 578999876410
Q ss_pred ----------CCCCCC-------------------------C---------------------------CC---------
Q 017846 257 ----------APVNPT-------------------------F---------------------------LP--------- 265 (365)
Q Consensus 257 ----------~~~~~~-------------------------~---------------------------~~--------- 265 (365)
.+..|. + .|
T Consensus 167 aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a 246 (371)
T KOG0146|consen 167 AALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQA 246 (371)
T ss_pred HHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhh
Confidence 000000 0 00
Q ss_pred -----------------------C------CchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CC
Q 017846 266 -----------------------R------SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QH 314 (365)
Q Consensus 266 -----------------------~------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~ 314 (365)
. ......+.+++|||..||.+..+.+|.++|-+| |.|.+.+|..|+ +.
T Consensus 247 ~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF-GhivSaKVFvDRATNQ 325 (371)
T KOG0146|consen 247 YAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF-GHIVSAKVFVDRATNQ 325 (371)
T ss_pred hhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc-cceeeeeeeehhcccc
Confidence 0 000014568899999999999999999999995 999999999887 78
Q ss_pred cceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCCCC
Q 017846 315 STRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPVRPRA 359 (365)
Q Consensus 315 ~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~~~r~ 359 (365)
+|+|+||.|+++.+|+.||. |||+.|+-++|+ |.+.+|....|+
T Consensus 326 SKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK-VQLKRPkdanRP 370 (371)
T KOG0146|consen 326 SKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK-VQLKRPKDANRP 370 (371)
T ss_pred ccceeeEecCCchhHHHHHHHhcchhhhhhhhh-hhhcCccccCCC
Confidence 99999999999999999999 999999999999 999888766554
No 36
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.89 E-value=2.1e-23 Score=194.33 Aligned_cols=161 Identities=16% Similarity=0.205 Sum_probs=133.3
Q ss_pred hhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhh
Q 017846 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (365)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~ 153 (365)
..+.++|||+|+|+++.|+++|++||+|.+|.||+|+.|+++ + ||+||+|.+ ++ ...+ ++.
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rs-r---------gFgfv~f~~-~~------~v~~--vl~ 66 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRS-R---------GFGFVTFAT-PE------GVDA--VLN 66 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCc-c---------cccceecCC-Cc------chhe--eec
Confidence 357889999999999999999999999999999999999999 9 999999998 44 2444 454
Q ss_pred hcCCC-CCcccccccCCcccc--C----CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEE
Q 017846 154 RNGYS-QGKRRMNCRTSNAQQ--D----EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVE 224 (365)
Q Consensus 154 ~~~~~-~gk~~~~~~~~~~~~--~----~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~ 224 (365)
...+. .|+. +......+.. . ....++|||++||.++++++|+++|.+||.|..+.++.|..+ ++||+||+
T Consensus 67 ~~~h~~dgr~-ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~ 145 (311)
T KOG4205|consen 67 ARTHKLDGRS-VEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVT 145 (311)
T ss_pred ccccccCCcc-ccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeE
Confidence 44443 5555 2222222211 1 112457999999999999999999999999999999999865 69999999
Q ss_pred eCCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 017846 225 FTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 225 F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
|.+++.+++++....+.|.|+.+.|+.|.+
T Consensus 146 ~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 146 FDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eccccccceecccceeeecCceeeEeeccc
Confidence 999999999999999999999999999864
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=3.1e-22 Score=167.84 Aligned_cols=157 Identities=18% Similarity=0.317 Sum_probs=138.7
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
..++|+|.-..+++.|+|+|-+.|+|+++++++|+.|... + ||||++|.+ ++ ||+. |++-+
T Consensus 11 tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~-q---------GygF~Ef~~-ee------dadY--Aikil 71 (203)
T KOG0131|consen 11 TLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKH-Q---------GYGFAEFRT-EE------DADY--AIKIL 71 (203)
T ss_pred eEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccc-c---------ceeEEEEec-hh------hhHH--HHHHH
Confidence 4567999999999999999999999999999999999977 7 999999999 77 8999 99999
Q ss_pred CCC--CCcccccccCCccc---cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEE-EEecCCC--CCceEEEEEeCC
Q 017846 156 GYS--QGKRRMNCRTSNAQ---QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-RICGDPN--SVLRFAFVEFTD 227 (365)
Q Consensus 156 ~~~--~gk~~~~~~~~~~~---~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~d~~--~~kg~aFV~F~~ 227 (365)
|.. -||+ +++..+. .......+|||+||.+.++|..|.+.|+.||.+.+. +|++|+. .++|||||.|.+
T Consensus 72 n~VkLYgrp---Irv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 72 NMVKLYGRP---IRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred HHHHhcCce---eEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 976 8999 6665554 333445689999999999999999999999998764 8888886 469999999999
Q ss_pred HHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 228 EEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 228 ~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
.+.+.+|+. +||+.+..+++.|.++..
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 999999999 999999999999999853
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.83 E-value=3.3e-20 Score=172.99 Aligned_cols=172 Identities=21% Similarity=0.301 Sum_probs=148.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
..++||||+|+++++++.|+++|.+||+|.+|.+++|+.+ +|||+||+|.+++.+.++|...-+.|.|+.|.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 6788999999999999999999999999999999999854 79999999999999999998777899999999998753
Q ss_pred CCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHH
Q 017846 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 332 (365)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~A 332 (365)
....... .+....+.|||++||..+++++|+++|.+ ||.|..+.++.|. .+++||+||.|.+.+++.++
T Consensus 85 r~~~~~~--------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 85 REDQTKV--------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred ccccccc--------ccccceeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeecccccccccceeeEecccccccee
Confidence 2211110 11124679999999999999999999999 5999999998887 57999999999999999999
Q ss_pred HHhCCceeCCeeeEEeecCCCCCCCC
Q 017846 333 LNCSGAVLGSLPIRLVSPSKTPVRPR 358 (365)
Q Consensus 333 l~lng~~l~g~~l~~V~~a~~~~~~r 358 (365)
+...-+.|+++.+. |..|.|.....
T Consensus 156 ~~~~f~~~~gk~ve-vkrA~pk~~~~ 180 (311)
T KOG4205|consen 156 TLQKFHDFNGKKVE-VKRAIPKEVMQ 180 (311)
T ss_pred cccceeeecCceee-Eeeccchhhcc
Confidence 98888999999999 99887765544
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=5.1e-21 Score=184.45 Aligned_cols=176 Identities=29% Similarity=0.384 Sum_probs=146.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~ 251 (365)
++...+++|+--|+...++.+|.++|+.+|.|..|+|+.|+.+ ++|.|||+|.+.+.+..|+.|.|+.+.|.+|.|+.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 3445678999999999999999999999999999999999854 79999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCc-hhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHH
Q 017846 252 SKTAIAPVNPTFLPRSE-DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAES 328 (365)
Q Consensus 252 a~~~~~~~~~~~~~~~~-~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~ 328 (365)
....... .....+... .....+...|||+||.+++++++|+.+|++| |.|..|.+.+|. |.++|||||+|.+.++
T Consensus 255 sEaeknr-~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf-g~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 255 SEAEKNR-AANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF-GKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cHHHHHH-HHhccccccccccccchhhhhhcccccCchHHHHhhhccCc-ccceeeeeccccccccccCcceEEEecHHH
Confidence 6432111 000011111 1112233349999999999999999999995 999999999995 8999999999999999
Q ss_pred HHHHHH-hCCceeCCeeeEEeecCC
Q 017846 329 AIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 329 A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
|.+|++ |||++|.|+.|+ |....
T Consensus 333 ar~a~e~lngfelAGr~ik-V~~v~ 356 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIK-VSVVT 356 (549)
T ss_pred HHHHHHHhccceecCceEE-EEEee
Confidence 999999 999999999999 87643
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.81 E-value=5.1e-20 Score=164.75 Aligned_cols=146 Identities=18% Similarity=0.265 Sum_probs=129.2
Q ss_pred hhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
.+.++|+|+-++++.+|+.+|.+||.|.+|.|++ -||||..++ .. .|+. |++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------------------NYgFVHiEd-kt------aaed--airN 55 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK------------------NYGFVHIED-KT------AAED--AIRN 55 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec------------------ccceEEeec-cc------ccHH--HHhh
Confidence 3788999999999999999999999999999987 689999988 33 3666 8887
Q ss_pred cCCC--CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHH
Q 017846 155 NGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 232 (365)
Q Consensus 155 ~~~~--~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~ 232 (365)
+++. +|.. +.+..++.....+.+|+||||.+.++.++|+..|++||.|.+|+|++| |+||+|.-.++|.
T Consensus 56 LhgYtLhg~n---InVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd------y~fvh~d~~eda~ 126 (346)
T KOG0109|consen 56 LHGYTLHGVN---INVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD------YAFVHFDRAEDAV 126 (346)
T ss_pred cccceecceE---EEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc------eeEEEEeeccchH
Confidence 7776 6766 666666666778889999999999999999999999999999999975 9999999999999
Q ss_pred HHHH-hCCceeCCeeEEEeeCCCCC
Q 017846 233 AALS-LAGTMLGFYPVRVLPSKTAI 256 (365)
Q Consensus 233 ~Al~-l~g~~i~g~~l~V~~a~~~~ 256 (365)
.|++ |++.++.|++++|+.+....
T Consensus 127 ~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 127 EAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred HHHhcccccccccceeeeeeecccc
Confidence 9998 99999999999999986543
No 41
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=5.5e-19 Score=148.59 Aligned_cols=157 Identities=19% Similarity=0.276 Sum_probs=127.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~ 255 (365)
..++|||||||.++-+.+|+++|.+||.|..|.+...++ .-.||||+|+++.+|+.||. -+|..+.|..|+|+++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 467899999999999999999999999999999865543 34799999999999999999 9999999999999998654
Q ss_pred CCCCCCC--CCC----------CCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEe
Q 017846 256 IAPVNPT--FLP----------RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF 323 (365)
Q Consensus 256 ~~~~~~~--~~~----------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F 323 (365)
....... +.. ............|.|.+||++.+++||++++.+. |+|....+.+| |++.|+|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea-GdvCfadv~rD-----g~GvV~~ 157 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA-GDVCFADVQRD-----GVGVVEY 157 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh-CCeeeeeeecc-----cceeeee
Confidence 3111000 000 0000001234689999999999999999999995 99999999988 4899999
Q ss_pred CCHHHHHHHHH-hCCcee
Q 017846 324 AMAESAIAALN-CSGAVL 340 (365)
Q Consensus 324 ~~~~~A~~Al~-lng~~l 340 (365)
...++.+-|+. |+...+
T Consensus 158 ~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eehhhHHHHHHhhccccc
Confidence 99999999999 887665
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.78 E-value=1.5e-17 Score=156.01 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=124.2
Q ss_pred cchhhhhcCCccccccHHHHHHHHh-ccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchh
Q 017846 72 DNHMERKMGESFKDCEMRDLVDMLS-KLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTT 150 (365)
Q Consensus 72 ~~~~~~~~g~~~~~~~~~~L~~~Fs-~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~ 150 (365)
...+..++-+++|+.-.++|+++|. +.|+|+.|.+..|...+.. |+|.|+|++ ++ .+++
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~r-----------GcavVEFk~-~E------~~qK-- 101 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKAR-----------GCAVVEFKD-PE------NVQK-- 101 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcC-----------CceEEEeeC-HH------HHHH--
Confidence 3445578899999999999999996 5899999999999887755 999999999 55 5888
Q ss_pred hhhhcCCC--CCcccccccCCcc-c--------------------------------------------c----------
Q 017846 151 RRKRNGYS--QGKRRMNCRTSNA-Q--------------------------------------------Q---------- 173 (365)
Q Consensus 151 a~~~~~~~--~gk~~~~~~~~~~-~--------------------------------------------~---------- 173 (365)
|++.++.. .||+. .++.... + +
T Consensus 102 a~E~lnk~~~~GR~l-~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~ 180 (608)
T KOG4212|consen 102 ALEKLNKYEVNGREL-VVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNN 180 (608)
T ss_pred HHHHhhhccccCceE-EEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccC
Confidence 88888776 66661 1111100 0 0
Q ss_pred ------------------------------CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEE
Q 017846 174 ------------------------------DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAF 222 (365)
Q Consensus 174 ------------------------------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aF 222 (365)
.+.....+||+||...+..+.|++.|.--|.|+.+.+-.|+ +.++|||.
T Consensus 181 t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~v 260 (608)
T KOG4212|consen 181 TNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAV 260 (608)
T ss_pred ccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeE
Confidence 01122359999999999999999999999999999999998 45799999
Q ss_pred EEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 223 VEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 223 V~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
++|..+-+|-.||. +++.-+..++..+..
T Consensus 261 i~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 261 IEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred EEecchHHHHHHHHhhccCCCccccceeec
Confidence 99999999999998 886655555544443
No 43
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=1.7e-17 Score=158.25 Aligned_cols=246 Identities=22% Similarity=0.219 Sum_probs=179.5
Q ss_pred hhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcC
Q 017846 77 RKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNG 156 (365)
Q Consensus 77 ~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~ 156 (365)
...-||+|+|+++||.++|+.++ |.++.+.+ .+++. . |=|||+|.+ ++ |++. |+++..
T Consensus 13 vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~-s---------GeA~Ve~~s-ee------dv~~--AlkkdR 70 (510)
T KOG4211|consen 13 VRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRP-S---------GEAYVEFTS-EE------DVEK--ALKKDR 70 (510)
T ss_pred EEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCc-C---------cceEEEeec-hH------HHHH--HHHhhH
Confidence 34589999999999999999984 77755544 44544 4 999999999 67 7888 888766
Q ss_pred CCCCcccccccCCccc---------cC--CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeE-EEEecCC-CCCceEEEE
Q 017846 157 YSQGKRRMNCRTSNAQ---------QD--EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD-CRICGDP-NSVLRFAFV 223 (365)
Q Consensus 157 ~~~gk~~~~~~~~~~~---------~~--~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~d~-~~~kg~aFV 223 (365)
...|.+.|.+-..... .. ......|-+++||+.+|++||.++|+..-.|.. |-++.++ .++.|-|||
T Consensus 71 ~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfV 150 (510)
T KOG4211|consen 71 ESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFV 150 (510)
T ss_pred HHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEE
Confidence 6666665544322111 11 123456999999999999999999997755554 5566666 457899999
Q ss_pred EeCCHHHHHHHHHhCCceeCCeeEEEeeCCCC-----C------CC-CCCCCC---------------------------
Q 017846 224 EFTDEEGARAALSLAGTMLGFYPVRVLPSKTA-----I------AP-VNPTFL--------------------------- 264 (365)
Q Consensus 224 ~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~~-----~------~~-~~~~~~--------------------------- 264 (365)
+|++.+.|++||.-|...|+.|-|.|..+... . .. +.|...
T Consensus 151 qF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~ 230 (510)
T KOG4211|consen 151 QFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGG 230 (510)
T ss_pred EecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCcccccccccc
Confidence 99999999999998888899999998775310 0 00 000000
Q ss_pred --------------------------CCCch----hh----------cccccEEEeeCCCCCCCHHHHHHHhhhcCCceE
Q 017846 265 --------------------------PRSED----ER----------EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ 304 (365)
Q Consensus 265 --------------------------~~~~~----~~----------~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~ 304 (365)
..... .+ ......++.++||+..++.++..+|+. ....
T Consensus 231 ~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFsp--l~p~ 308 (510)
T KOG4211|consen 231 EGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSP--LNPY 308 (510)
T ss_pred CCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCC--CCce
Confidence 00000 00 112367889999999999999999996 4666
Q ss_pred EEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeE
Q 017846 305 RLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIR 346 (365)
Q Consensus 305 ~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~ 346 (365)
.|.|-..+ ++..|-|+|+|.+.++|..|+.-++..+..+-|.
T Consensus 309 ~v~i~ig~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVE 351 (510)
T KOG4211|consen 309 RVHIEIGPDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVE 351 (510)
T ss_pred eEEEEeCCCCccCCcceeecccchhhHhhhccCCcccCcceee
Confidence 77776554 7889999999999999999998777777777766
No 44
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=6.6e-17 Score=140.97 Aligned_cols=170 Identities=25% Similarity=0.349 Sum_probs=138.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHH----HhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 177 IRRTVYVSDIDQQVTEEQLAT----LFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~----~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
...||||.||+..+..++|+. +|++||.|.+|.....+ +.||-|||.|.+.+.|..|+. |+|..+-|++++|.+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 344999999999999999888 99999999999887653 458999999999999999998 999999999999999
Q ss_pred CCCCCCC--C-CCCCCCC---------------------------------CchhhcccccEEEeeCCCCCCCHHHHHHH
Q 017846 252 SKTAIAP--V-NPTFLPR---------------------------------SEDEREMCSRTIYCTNIDKKVTQGDIKLF 295 (365)
Q Consensus 252 a~~~~~~--~-~~~~~~~---------------------------------~~~~~~~~~~~l~V~nLp~~~te~~L~~~ 295 (365)
|+....- . .+.+..+ ......++...+++.|||.+++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 8753110 0 0000000 00122456789999999999999999999
Q ss_pred hhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeecCC
Q 017846 296 FESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRLVSPSK 352 (365)
Q Consensus 296 F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~-g~~l~~V~~a~ 352 (365)
|++ |.....|+++... .+.|||+|.+...|..|.. +.|..+. ...++ |.+++
T Consensus 167 f~q-f~g~keir~i~~~---~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~-i~~a~ 220 (221)
T KOG4206|consen 167 FEQ-FPGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ-ITFAK 220 (221)
T ss_pred Hhh-CcccceeEeccCC---CceeEEecchhhhhHHHhhhhccceeccCceEE-ecccC
Confidence 999 5889999988753 2699999999999999999 9999886 88888 88765
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.71 E-value=3.7e-16 Score=145.78 Aligned_cols=169 Identities=27% Similarity=0.327 Sum_probs=134.0
Q ss_pred CcEEEEcCCC-CCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCC
Q 017846 178 RRTVYVSDID-QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 178 ~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~ 255 (365)
+..|.|.||. ..+|.+.|..+|.-||.|..|+|+..++ --|.|+|.+...|.-|++ |+|+.+.|++|+|.+++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 4568999996 5699999999999999999999999875 479999999999999999 9999999999999999753
Q ss_pred CCCCCC----C------C----CCCCc-------hhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEE-EEeccCC
Q 017846 256 IAPVNP----T------F----LPRSE-------DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL-RLLGDYQ 313 (365)
Q Consensus 256 ~~~~~~----~------~----~~~~~-------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v-~i~~d~~ 313 (365)
...... . + ..+.. ...-+++.+|++.|+|.+++|++|+.+|.+. |...+. +....
T Consensus 374 ~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~-g~~vkafkff~k-- 450 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEP-GGQVKAFKFFQK-- 450 (492)
T ss_pred cccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcC-CceEEeeeecCC--
Confidence 221110 0 0 00110 0013567899999999999999999999996 655444 44332
Q ss_pred CcceEEEEEeCCHHHHHHHHH-hCCceeCCe-eeEEeecCCCC
Q 017846 314 HSTRIAFVEFAMAESAIAALN-CSGAVLGSL-PIRLVSPSKTP 354 (365)
Q Consensus 314 ~~kg~afV~F~~~~~A~~Al~-lng~~l~g~-~l~~V~~a~~~ 354 (365)
.+-+|++.+++.+.|..|+- ++.+.+++. -|+ |+|++..
T Consensus 451 -d~kmal~q~~sveeA~~ali~~hnh~lgen~hlR-vSFSks~ 491 (492)
T KOG1190|consen 451 -DRKMALPQLESVEEAIQALIDLHNHYLGENHHLR-VSFSKST 491 (492)
T ss_pred -CcceeecccCChhHhhhhccccccccCCCCceEE-EEeeccc
Confidence 23499999999999999999 999999776 788 9999875
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=2.2e-17 Score=163.46 Aligned_cols=161 Identities=19% Similarity=0.227 Sum_probs=130.7
Q ss_pred hhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcC
Q 017846 77 RKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNG 156 (365)
Q Consensus 77 ~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~ 156 (365)
.++-+|.|+|+.++|..+|++.|.|.++.|...+......+ +.|||||+|.+ .+ +|+. |++.++
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~l-------SmGfgFVEF~~-~e------~A~~--a~k~lq 581 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYL-------SMGFGFVEFAK-PE------SAQA--ALKALQ 581 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEecccccccccc-------ccceeEEEecC-HH------HHHH--HHHHhc
Confidence 66789999999999999999999999998877664432212 23999999999 66 6888 999998
Q ss_pred CC--CCcccccccCCc--------cccCC-CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEE
Q 017846 157 YS--QGKRRMNCRTSN--------AQQDE-VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFV 223 (365)
Q Consensus 157 ~~--~gk~~~~~~~~~--------~~~~~-~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV 223 (365)
+. +|+. +-+++.. .+... ....+|+|.|||+..+..+++++|..||.|.+|+|+.-.+ .+||||||
T Consensus 582 gtvldGH~-l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv 660 (725)
T KOG0110|consen 582 GTVLDGHK-LELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFV 660 (725)
T ss_pred CceecCce-EEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceee
Confidence 66 6766 3333333 11111 1234699999999999999999999999999999998643 46999999
Q ss_pred EeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 224 EFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 224 ~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
+|-++++|.+|+. |..+-+.||+|.++|+..
T Consensus 661 ~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 661 DFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred eccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 9999999999998 999999999999999863
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=4.8e-16 Score=130.99 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
...++|||+|||+++++++|+++|++||.|.+++|+.|+. .++|||||+|.++++|++|++ |++..|.|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3567899999999999999999999999999999999875 479999999999999999998 9999999999999998
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
...
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 643
No 48
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.67 E-value=1.5e-15 Score=142.66 Aligned_cols=179 Identities=23% Similarity=0.266 Sum_probs=144.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhh-hCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
...+.+||.|||+++.+++|+++|. +.|+|+.|.++.|. +++||||.|+|+++|.+++|++ ||.+.+.||+|.|+..
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3456799999999999999999997 78999999999998 5689999999999999999999 9999999999999875
Q ss_pred CCCCCC-------------------------CC----------CCCCCCCch----------------------------
Q 017846 253 KTAIAP-------------------------VN----------PTFLPRSED---------------------------- 269 (365)
Q Consensus 253 ~~~~~~-------------------------~~----------~~~~~~~~~---------------------------- 269 (365)
...... .+ ..+.+++.+
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 320000 00 000110000
Q ss_pred --------hhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCce
Q 017846 270 --------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAV 339 (365)
Q Consensus 270 --------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~ 339 (365)
..++....+||.||...+....|++.|.- -|.|..|.+-.|+ +.++|++.++|..+-.|..||. |++.-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 01344568999999999999999999997 5999999998887 7899999999999999999999 98877
Q ss_pred eCCeeeEEeecCCCCCC
Q 017846 340 LGSLPIRLVSPSKTPVR 356 (365)
Q Consensus 340 l~g~~l~~V~~a~~~~~ 356 (365)
+.+++.. +...+-+.+
T Consensus 281 ~~~~~~~-~Rl~~~~Dr 296 (608)
T KOG4212|consen 281 LFDRRMT-VRLDRIPDR 296 (608)
T ss_pred Cccccce-eeccccccc
Confidence 7888887 776554433
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2.5e-16 Score=139.65 Aligned_cols=77 Identities=22% Similarity=0.458 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
..++|||-.||.+..+.+|...|-.||.|++.++..|+-+ ||.||||.|+++.+|..||. |||.-|+-++|+|...+
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 3578999999999999999999999999999999999854 79999999999999999998 99999999999998864
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.67 E-value=1.7e-15 Score=144.82 Aligned_cols=168 Identities=25% Similarity=0.268 Sum_probs=132.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAI 256 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~~~ 256 (365)
...-|-+.+|||++|+++|.++|+.++ |+.+.+.++.++..|=|||+|.+++++++||+.+...+..|-|.|-.+....
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcc
Confidence 344588899999999999999999984 7888888887888899999999999999999999999999999999875432
Q ss_pred CCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEE-EEEeccC-CCcceEEEEEeCCHHHHHHHHH
Q 017846 257 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LRLLGDY-QHSTRIAFVEFAMAESAIAALN 334 (365)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~-v~i~~d~-~~~kg~afV~F~~~~~A~~Al~ 334 (365)
. .+.+.+..... ....-.|.+++||+.+|++||.++|+.. -.|.. |.++.+. +++.|-|||+|++.+.|++||.
T Consensus 88 ~--d~~~~~~g~~s-~~~d~vVRLRGLPfscte~dI~~FFaGL-~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 88 A--DWVMRPGGPNS-SANDGVVRLRGLPFSCTEEDIVEFFAGL-EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred c--cccccCCCCCC-CCCCceEEecCCCccCcHHHHHHHhcCC-cccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 2 11111111111 1345789999999999999999999864 33333 3345555 6899999999999999999998
Q ss_pred hCCceeCCeeeEEeec
Q 017846 335 CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 335 lng~~l~g~~l~~V~~ 350 (365)
-|...|+.+-|. |-.
T Consensus 164 rhre~iGhRYIE-vF~ 178 (510)
T KOG4211|consen 164 RHRENIGHRYIE-VFR 178 (510)
T ss_pred HHHHhhccceEE-eeh
Confidence 777788888888 543
No 51
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2e-16 Score=139.28 Aligned_cols=156 Identities=26% Similarity=0.331 Sum_probs=128.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~ 257 (365)
..+|||+||+.+.+.+|+.+|..||.|..+.+.. ||+||+|++..+|..|+. +++.+|.|..+.|+|+.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 3589999999999999999999999999998865 799999999999999998 999999998899999874211
Q ss_pred CC-CCC--CC---CCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHH
Q 017846 258 PV-NPT--FL---PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIA 331 (365)
Q Consensus 258 ~~-~~~--~~---~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~ 331 (365)
.. .+. .. .............+.|.+++-.+.+.+|.+.|++ +|.+....+. .+++||+|.+.++|..
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~~~------~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVDAR------RNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcc-cCCCchhhhh------ccccceeehhhhhhhh
Confidence 11 000 00 1111122445678999999999999999999999 6999665552 3589999999999999
Q ss_pred HHH-hCCceeCCeeeEEe
Q 017846 332 ALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 332 Al~-lng~~l~g~~l~~V 348 (365)
|+. |++..+.++.|. +
T Consensus 149 a~~~l~~~~~~~~~l~-~ 165 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRIS-V 165 (216)
T ss_pred cchhccchhhcCceee-e
Confidence 999 999999999999 7
No 52
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=6e-15 Score=137.78 Aligned_cols=245 Identities=19% Similarity=0.185 Sum_probs=168.6
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
-...+.|+|||+|.||.+++..||.|..+.+.+.+ --||++|.+..+ |+...
T Consensus 30 V~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk----------------nQAflem~d~~s------------Avtmv 81 (492)
T KOG1190|consen 30 VVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK----------------NQAFLEMADEES------------AVTMV 81 (492)
T ss_pred eeEeccCCccccHHHHHHhcccccceeeeeeeccc----------------hhhhhhhcchhh------------hhhee
Confidence 34458999999999999999999999998877642 346777777333 11111
Q ss_pred CCC-------CCccccccc----------------------------------CCc------cccCCCCCcEEEEcCCCC
Q 017846 156 GYS-------QGKRRMNCR----------------------------------TSN------AQQDEVIRRTVYVSDIDQ 188 (365)
Q Consensus 156 ~~~-------~gk~~~~~~----------------------------------~~~------~~~~~~~~~~lfV~nLp~ 188 (365)
++. .|++ +-+. ... ....+..--.++|+++-.
T Consensus 82 ~~y~~~~p~lr~~~-~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~y 160 (492)
T KOG1190|consen 82 NYYTSVTPVLRGQP-IYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFY 160 (492)
T ss_pred ecccccCccccCcc-eeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEecccee
Confidence 111 1111 0000 000 000011112488999999
Q ss_pred CCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeC-C-eeEEEeeCCCC----------
Q 017846 189 QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-F-YPVRVLPSKTA---------- 255 (365)
Q Consensus 189 ~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~-g-~~l~V~~a~~~---------- 255 (365)
.++-+-|..+|++||.|..|.-..... .=-|.|+|.+.+.|..|.. |+|+.|. | ..|+|.+++-.
T Consensus 161 pVslDVLHqvFS~fG~VlKIiTF~Knn--~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndk 238 (492)
T KOG1190|consen 161 PVSLDVLHQVFSKFGFVLKIITFTKNN--GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDK 238 (492)
T ss_pred eeEHHHHHHHHhhcceeEEEEEEeccc--chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccc
Confidence 999999999999999998765443222 1248999999999999987 9999875 4 47888776420
Q ss_pred -------CCCCC-----------------------CCCCCCCc------hh-hccc--ccEEEeeCCCC-CCCHHHHHHH
Q 017846 256 -------IAPVN-----------------------PTFLPRSE------DE-REMC--SRTIYCTNIDK-KVTQGDIKLF 295 (365)
Q Consensus 256 -------~~~~~-----------------------~~~~~~~~------~~-~~~~--~~~l~V~nLp~-~~te~~L~~~ 295 (365)
..|.. |...|... +. .... ...|.|.||.+ .+|.+-|.-+
T Consensus 239 SRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~Lftl 318 (492)
T KOG1190|consen 239 SRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTL 318 (492)
T ss_pred cccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHH
Confidence 00111 00001000 00 0111 46788888865 6999999999
Q ss_pred hhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCC
Q 017846 296 FESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPVR 356 (365)
Q Consensus 296 F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~~ 356 (365)
|+- ||+|.+|+|+.+++ --|.|+|.+...|+-|++ |+|..+.|++|+ |.++|-+.-
T Consensus 319 Fgv-YGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lr-vt~SKH~~v 375 (492)
T KOG1190|consen 319 FGV-YGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLR-VTLSKHTNV 375 (492)
T ss_pred Hhh-hcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEE-EeeccCccc
Confidence 997 79999999998764 369999999999999999 999999999999 999886543
No 53
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.64 E-value=3.7e-15 Score=129.09 Aligned_cols=163 Identities=20% Similarity=0.267 Sum_probs=123.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CC--CceEEEEEeCCHHHHHHHHH-hCCceeC---CeeE
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NS--VLRFAFVEFTDEEGARAALS-LAGTMLG---FYPV 247 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~---g~~l 247 (365)
+..-+||||.+||.++...+|..+|..|-..+.+.+.... +. -+-+|||+|.+.+.|.+|+. |||..+. +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3456899999999999999999999999888877776533 22 26799999999999999998 9999986 7889
Q ss_pred EEeeCCCCCCCCC------CC-----------CCCC--------------------------------------------
Q 017846 248 RVLPSKTAIAPVN------PT-----------FLPR-------------------------------------------- 266 (365)
Q Consensus 248 ~V~~a~~~~~~~~------~~-----------~~~~-------------------------------------------- 266 (365)
+|+.++.+..... |. ...+
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 9998864321100 00 0000
Q ss_pred --Cc----h-----hhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-
Q 017846 267 --SE----D-----EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN- 334 (365)
Q Consensus 267 --~~----~-----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~- 334 (365)
.. . .....+-||||.||..++||++|+.+|+. |.....++|.... ....||+.|++.+.|..|+.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~-~~gf~~l~~~~~~--g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR-YPGFHILKIRARG--GMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh-CCCceEEEEecCC--CcceEeecHHHHHHHHHHHHH
Confidence 00 0 00113458999999999999999999999 5777766664332 23489999999999999999
Q ss_pred hCCcee
Q 017846 335 CSGAVL 340 (365)
Q Consensus 335 lng~~l 340 (365)
|.|..|
T Consensus 268 lqg~~~ 273 (284)
T KOG1457|consen 268 LQGNLL 273 (284)
T ss_pred hhccee
Confidence 999876
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1.9e-15 Score=127.32 Aligned_cols=80 Identities=23% Similarity=0.346 Sum_probs=74.2
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
..++|||+|||..+++++|+++|++ ||.|.+|.|+.+. ++++|||||+|.+.++|..|++ ||+..|.|++|+ |++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~-V~~ 110 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR-VNP 110 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE-EEe
Confidence 4578999999999999999999999 6999999999886 5799999999999999999999 999999999999 999
Q ss_pred CCCCC
Q 017846 351 SKTPV 355 (365)
Q Consensus 351 a~~~~ 355 (365)
+.+..
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87543
No 55
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.63 E-value=1.6e-14 Score=132.62 Aligned_cols=173 Identities=18% Similarity=0.277 Sum_probs=135.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCee--------EEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeC
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--------DCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLG 243 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~ 243 (365)
.+..+..|||.|||.++|-+++.++|++||.|. .|++.++. ++-+|=|.++|-..+++..|+. |++..+.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345567799999999999999999999999884 37788876 4569999999999999999999 9999999
Q ss_pred CeeEEEeeCCCCCCCC----------CCC-------------CCCCC-chhhcccccEEEeeCCC----CCCC-------
Q 017846 244 FYPVRVLPSKTAIAPV----------NPT-------------FLPRS-EDEREMCSRTIYCTNID----KKVT------- 288 (365)
Q Consensus 244 g~~l~V~~a~~~~~~~----------~~~-------------~~~~~-~~~~~~~~~~l~V~nLp----~~~t------- 288 (365)
|+.|+|+.|+-..... ... +.|.. ...+....++|.++|+= ...+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999999986321110 000 11211 12224566899999972 1223
Q ss_pred HHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 289 QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 289 e~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
.++|++-+++ ||.|.+|.|.-. .+.|.+-|.|.+.++|..||+ |+|+.|.||.|. .+.
T Consensus 290 kedl~eec~K-~G~v~~vvv~d~--hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~-A~i 348 (382)
T KOG1548|consen 290 KEDLTEECEK-FGQVRKVVVYDR--HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLT-ASI 348 (382)
T ss_pred HHHHHHHHHH-hCCcceEEEecc--CCCceeEEEeCChHHHHHHHHHhcCeeecceEEE-EEE
Confidence 4677788999 599999988632 356899999999999999999 999999999998 655
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=5.8e-15 Score=108.22 Aligned_cols=68 Identities=32% Similarity=0.549 Sum_probs=64.1
Q ss_pred EEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecC-CCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEE
Q 017846 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD-PNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (365)
Q Consensus 181 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d-~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~ 248 (365)
|||+|||+++++++|+++|++||.|..+.+..+ .+.++|||||+|.++++|++|++ ++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999996 35569999999999999999999 999999999985
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.7e-14 Score=141.27 Aligned_cols=249 Identities=17% Similarity=0.214 Sum_probs=175.9
Q ss_pred hhhcCCccccccHHHHHHHHhcc-----------C-CcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCccc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKL-----------N-PMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTAN 143 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~-----------G-~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~ 143 (365)
-..+|++++.+.++.+...|..- | .|.++.+... . .|+|+.|.+ ..
T Consensus 177 r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~-------~---------nfa~ie~~s-~~----- 234 (500)
T KOG0120|consen 177 RLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE-------K---------NFAFIEFRS-IS----- 234 (500)
T ss_pred hhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc-------c---------cceeEEecC-CC-----
Confidence 44559999999999999999875 2 3666655443 4 899999999 45
Q ss_pred ccccchhhhhhcCCC-CCcccccccCCcc----------------------ccCCCCCcEEEEcCCCCCCcHHHHHHHhh
Q 017846 144 TNGHTTTRRKRNGYS-QGKRRMNCRTSNA----------------------QQDEVIRRTVYVSDIDQQVTEEQLATLFL 200 (365)
Q Consensus 144 ~da~~~~a~~~~~~~-~gk~~~~~~~~~~----------------------~~~~~~~~~lfV~nLp~~~te~~L~~~F~ 200 (365)
+|.. ++...... .|.+....+.... .........+||++||..+++.+++++..
T Consensus 235 -~at~--~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~ 311 (500)
T KOG0120|consen 235 -EATE--AMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLD 311 (500)
T ss_pred -chhh--hhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHH
Confidence 4555 44333322 4444111110000 01122334699999999999999999999
Q ss_pred hCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCCC---------CCC-
Q 017846 201 TCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFL---------PRS- 267 (365)
Q Consensus 201 ~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~~~---------~~~- 267 (365)
.||.+...+++.|.. -++||||.+|.+......|+. |||..++++.|.|..+-......+.... +..
T Consensus 312 ~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~ 391 (500)
T KOG0120|consen 312 SFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLM 391 (500)
T ss_pred hcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhh
Confidence 999999999999886 379999999999999999999 9999999999999988543322222111 110
Q ss_pred chhhcccccEEEeeCC--CCCC-CH-------HHHHHHhhhcCCceEEEEEecc-C----CCcceEEEEEeCCHHHHHHH
Q 017846 268 EDEREMCSRTIYCTNI--DKKV-TQ-------GDIKLFFESVCGEVQRLRLLGD-Y----QHSTRIAFVEFAMAESAIAA 332 (365)
Q Consensus 268 ~~~~~~~~~~l~V~nL--p~~~-te-------~~L~~~F~~~~G~I~~v~i~~d-~----~~~kg~afV~F~~~~~A~~A 332 (365)
......+...|.+.|+ |..+ .+ ++++.-+.+ ||.|.+|.|++. . .-..|-.||+|.+.+++++|
T Consensus 392 ~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k-~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA 470 (500)
T KOG0120|consen 392 TQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAK-FGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRA 470 (500)
T ss_pred cccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcc-cCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHH
Confidence 0111334455555554 1111 11 456677778 699999999987 3 23567899999999999999
Q ss_pred HH-hCCceeCCeeeEEeecC
Q 017846 333 LN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 333 l~-lng~~l~g~~l~~V~~a 351 (365)
+. |+|+.|.++.|. .+|-
T Consensus 471 ~~~L~GrKF~nRtVv-tsYy 489 (500)
T KOG0120|consen 471 MEELTGRKFANRTVV-ASYY 489 (500)
T ss_pred HHHccCceeCCcEEE-EEec
Confidence 99 999999999998 6653
No 58
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=2.4e-14 Score=129.40 Aligned_cols=78 Identities=27% Similarity=0.405 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~~ 255 (365)
..++|||+|||+.+++++|+++|+.||.|.+|+|+.|+. ++|||||+|.++++|+.||.|+|..|.|++|+|.++...
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 357899999999999999999999999999999999864 579999999999999999999999999999999998643
No 59
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=9.7e-14 Score=127.57 Aligned_cols=156 Identities=28% Similarity=0.361 Sum_probs=118.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
..+|||+|||.++++++|+++|..||.|..+.+..|+ +.++|||||+|.++++|..|+. +++..+.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999997 4579999999999999999999 999999999999999642
Q ss_pred --CCCCCCCC--------CCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC--CcceEEEEE
Q 017846 255 --AIAPVNPT--------FLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVE 322 (365)
Q Consensus 255 --~~~~~~~~--------~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~--~~kg~afV~ 322 (365)
........ ...............+++.+++..++..++...|.. +|.+....+..... ......++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKS-RGDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccc-cccceeeeccCCCCCcccccccccc
Confidence 11111100 001111222456678999999999999999999998 59997777665542 233344444
Q ss_pred eCCHHHHHHHHH
Q 017846 323 FAMAESAIAALN 334 (365)
Q Consensus 323 F~~~~~A~~Al~ 334 (365)
+.....+..+..
T Consensus 274 ~~~~~~~~~~~~ 285 (306)
T COG0724 274 NEASKDALESNS 285 (306)
T ss_pred hhHHHhhhhhhc
Confidence 444555555544
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=5.3e-14 Score=103.06 Aligned_cols=68 Identities=29% Similarity=0.530 Sum_probs=64.5
Q ss_pred EEeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 017846 278 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (365)
Q Consensus 278 l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d-~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~ 346 (365)
|||+|||..+++++|+++|++ ||.|..+.+..+ .+..+|+|||+|.+.++|.+|++ |+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999 699999999985 47889999999999999999999 999999999986
No 61
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.51 E-value=5.1e-12 Score=117.10 Aligned_cols=251 Identities=19% Similarity=0.179 Sum_probs=172.7
Q ss_pred hcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcCC
Q 017846 78 KMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGY 157 (365)
Q Consensus 78 ~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~ 157 (365)
.+.||-=...+.||.+..+.||+|.-+.+++.+ --|.|+|.+... +..+... |-...-+
T Consensus 35 hvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~----------------r~alvefedi~~---akn~Vnf--aa~n~i~ 93 (494)
T KOG1456|consen 35 HVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK----------------RQALVEFEDIEG---AKNCVNF--AADNQIY 93 (494)
T ss_pred EEeccccccchhHHHHHHhcCCceEEEEecccc----------------ceeeeeeccccc---hhhheeh--hccCccc
Confidence 346666667899999999999999999888742 346788876333 1112221 1111111
Q ss_pred CCCcc-ccccc----CCccccCC-CCCcEEEEcCC--CCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHH
Q 017846 158 SQGKR-RMNCR----TSNAQQDE-VIRRTVYVSDI--DQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEE 229 (365)
Q Consensus 158 ~~gk~-~~~~~----~~~~~~~~-~~~~~lfV~nL--p~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~ 229 (365)
..|.. .+|.. +.+.-.+. ..+..|.+.=| -..+|-+-|..+....|.|..|.|.+..+ --|.|+|++.+
T Consensus 94 i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng---VQAmVEFdsv~ 170 (494)
T KOG1456|consen 94 IAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG---VQAMVEFDSVE 170 (494)
T ss_pred ccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc---eeeEEeechhH
Confidence 12222 11111 11111112 22333444434 46799999999999999999999987643 47999999999
Q ss_pred HHHHHHH-hCCceeC-C-eeEEEeeCCCCCC-------------------CCCCC-----------C-------------
Q 017846 230 GARAALS-LAGTMLG-F-YPVRVLPSKTAIA-------------------PVNPT-----------F------------- 263 (365)
Q Consensus 230 ~A~~Al~-l~g~~i~-g-~~l~V~~a~~~~~-------------------~~~~~-----------~------------- 263 (365)
.|++|.+ |||..|- | ..|+|+++++... +..+. .
T Consensus 171 ~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~ 250 (494)
T KOG1456|consen 171 VAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHS 250 (494)
T ss_pred HHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCC
Confidence 9999998 9999975 4 5899999875210 00000 0
Q ss_pred -------------CC-C----Cch-------hhcccccEEEeeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCcce
Q 017846 264 -------------LP-R----SED-------EREMCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR 317 (365)
Q Consensus 264 -------------~~-~----~~~-------~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg 317 (365)
.| + ..+ ....++..+.|.+|+. ..+-+.|..+|.. ||+|.+|++++.+. |
T Consensus 251 ~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~Cl-YGNV~rvkFmkTk~---g 326 (494)
T KOG1456|consen 251 GYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCL-YGNVERVKFMKTKP---G 326 (494)
T ss_pred CCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhh-cCceeeEEEeeccc---c
Confidence 00 0 000 0123567899999986 5788999999998 89999999998753 6
Q ss_pred EEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCC
Q 017846 318 IAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPVRP 357 (365)
Q Consensus 318 ~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~~~ 357 (365)
-|+|++.+..+.++|+. ||+..+.|.+|. |..++.....
T Consensus 327 tamVemgd~~aver~v~hLnn~~lfG~kl~-v~~SkQ~~v~ 366 (494)
T KOG1456|consen 327 TAMVEMGDAYAVERAVTHLNNIPLFGGKLN-VCVSKQNFVS 366 (494)
T ss_pred eeEEEcCcHHHHHHHHHHhccCccccceEE-Eeeccccccc
Confidence 89999999999999999 999999999999 8888765443
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=6.4e-14 Score=127.78 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
.....+.|+|+|||+..-+.||+.+|.+||.|.+|.|+.....|||||||+|++.++|++|-+ |||..+.||+|+|..+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 344567899999999999999999999999999999999988899999999999999999998 9999999999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
..
T Consensus 172 Ta 173 (376)
T KOG0125|consen 172 TA 173 (376)
T ss_pred ch
Confidence 64
No 63
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.9e-13 Score=123.50 Aligned_cols=79 Identities=28% Similarity=0.450 Sum_probs=72.4
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKT 353 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~~ 353 (365)
..++|||+|||+.+++++|+++|+. ||.|.+|.|+++.. .+|||||+|.+.++|..||.|||..|.|++|. |.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~-Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVT-ITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEE-EEeccC
Confidence 3589999999999999999999998 79999999998864 57899999999999999999999999999999 999875
Q ss_pred CC
Q 017846 354 PV 355 (365)
Q Consensus 354 ~~ 355 (365)
-.
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 64
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=5.6e-14 Score=123.07 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
.-++||||||+|++..+.|+++|++||+|++..|+.|+. +|||||||+|.+.++|.+|++=..-.|.||+-.|..+.-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 446799999999999999999999999999999999995 489999999999999999999555689999988888753
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1e-13 Score=121.82 Aligned_cols=79 Identities=28% Similarity=0.381 Sum_probs=75.3
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
...+|.|.||+.+++|++|.++|.+| |.|.+|.|.+|+ |.++|||||.|.++++|.+||. |||+-+..-.|+ |.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~f-g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr-vEw 265 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPF-GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR-VEW 265 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhcc-CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE-EEe
Confidence 56789999999999999999999995 999999999998 7899999999999999999999 999999999999 999
Q ss_pred CCCC
Q 017846 351 SKTP 354 (365)
Q Consensus 351 a~~~ 354 (365)
++|.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 66
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=2e-13 Score=126.63 Aligned_cols=248 Identities=18% Similarity=0.147 Sum_probs=167.6
Q ss_pred CCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcCCC-
Q 017846 80 GESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS- 158 (365)
Q Consensus 80 g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~- 158 (365)
.||+|..++.++-.+|.-..-..--+++-....+++ . |.|-|.|.+ ++ .-.. |+++..+.
T Consensus 66 Rglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrR-n---------ge~lvrf~d-~e------~Rdl--alkRhkhh~ 126 (508)
T KOG1365|consen 66 RGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRR-N---------GEALVRFVD-PE------GRDL--ALKRHKHHM 126 (508)
T ss_pred cCCCCCcccCCHHHHHhhhhccccceeeeehhhhcc-c---------cceEEEecC-ch------hhhh--hhHhhhhhc
Confidence 789999999999999976533222222222223333 3 999999999 55 1233 55554444
Q ss_pred CCcccccccCCccccC------------------CCCCcEEEEcCCCCCCcHHHHHHHhhh---C-CCeeEEEEecC-CC
Q 017846 159 QGKRRMNCRTSNAQQD------------------EVIRRTVYVSDIDQQVTEEQLATLFLT---C-GQVVDCRICGD-PN 215 (365)
Q Consensus 159 ~gk~~~~~~~~~~~~~------------------~~~~~~lfV~nLp~~~te~~L~~~F~~---~-G~i~~v~i~~d-~~ 215 (365)
.++. +.+..+..+ ......|-.++||.++++.++.++|.+ . |..+.|-+++. .+
T Consensus 127 g~ry---ievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdg 203 (508)
T KOG1365|consen 127 GTRY---IEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDG 203 (508)
T ss_pred cCCc---eeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCC
Confidence 3333 222222211 011234777899999999999999962 2 34566666665 46
Q ss_pred CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCCC-------------CCCC-CCCCC---CCCchhhcccccEE
Q 017846 216 SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA-------------IAPV-NPTFL---PRSEDEREMCSRTI 278 (365)
Q Consensus 216 ~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~~-------------~~~~-~~~~~---~~~~~~~~~~~~~l 278 (365)
+..|=|||.|..+++|..||..|...|+-|.|.+..+... ..+. ..... |...-.+.....+|
T Consensus 204 rpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcv 283 (508)
T KOG1365|consen 204 RPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCV 283 (508)
T ss_pred CcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCee
Confidence 6789999999999999999998888888887777665321 1110 00111 11111223346799
Q ss_pred EeeCCCCCCCHHHHHHHhhhcCCceEE--EEEecc-CCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 279 YCTNIDKKVTQGDIKLFFESVCGEVQR--LRLLGD-YQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 279 ~V~nLp~~~te~~L~~~F~~~~G~I~~--v~i~~d-~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
.+++||++.+-+||.++|..|--.|.. |.+..+ .|++.|-|||+|.+.++|..|.. .+......|.|. |-.
T Consensus 284 RLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE-vfp 358 (508)
T KOG1365|consen 284 RLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE-VFP 358 (508)
T ss_pred EecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE-Eee
Confidence 999999999999999999986334554 665554 48899999999999999999998 887777888888 533
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=2.9e-13 Score=99.61 Aligned_cols=68 Identities=37% Similarity=0.568 Sum_probs=61.4
Q ss_pred EEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEE
Q 017846 181 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (365)
Q Consensus 181 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~ 248 (365)
|||+|||+++++++|+++|+.||.|..+++..++. ..+|+|||+|.++++|.+|++ +++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999764 468999999999999999999 888999999875
No 68
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=4.7e-13 Score=119.17 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~~ 255 (365)
...+|||+||++.+|+++|+++|+.||.|.+|+|++|. ..+|||||+|.++++|+.|+.|+|..|.+++|.|.+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccc
Confidence 34689999999999999999999999999999999985 3458999999999999999999999999999999997643
No 69
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.46 E-value=7.6e-12 Score=115.97 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=127.3
Q ss_pred cEEEEcCCCCC-CcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCC
Q 017846 179 RTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAI 256 (365)
Q Consensus 179 ~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~ 256 (365)
+.+.|-+|... +.-+.|-.+|..||.|+.|++++.+. |-|.|++.+..++++|+. ||+..+.|.+|.|..++...
T Consensus 288 ~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 288 CVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred cEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 45889999865 66688999999999999999998765 799999999999999999 99999999999999987543
Q ss_pred C-CCCCCCCCC-------------------C---chhhcccccEEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC
Q 017846 257 A-PVNPTFLPR-------------------S---EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY 312 (365)
Q Consensus 257 ~-~~~~~~~~~-------------------~---~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~ 312 (365)
. +..+-.++. . ......++++|+.-|.|..+||+.|..+|... + ...+|+|...+
T Consensus 365 v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek-~v~~~svkvFp~k 443 (494)
T KOG1456|consen 365 VSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEK-DVPPTSVKVFPLK 443 (494)
T ss_pred cccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhc-CCCcceEEeeccc
Confidence 2 221111110 0 00114578899999999999999999999875 3 35678888766
Q ss_pred CCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 313 QHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (365)
Q Consensus 313 ~~~kg~afV~F~~~~~A~~Al~-lng~~l~g 342 (365)
......+.++|++.++|..||. +|...+.+
T Consensus 444 serSssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 444 SERSSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred ccccccceeeeehHHHHHHHHHHhccccccC
Confidence 4333468999999999999999 99998855
No 70
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.6e-13 Score=119.31 Aligned_cols=79 Identities=28% Similarity=0.371 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
.+..+|-|.||+.+++|++|+++|.+||.|..+.|.+|+.+ +||||||+|.+.++|.+||. |||.-+..--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36678999999999999999999999999999999999976 69999999999999999999 9999999999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
++
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 64
No 71
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=3.2e-13 Score=123.27 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=76.9
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...++|+|.|||+..-|.||+.+|++ ||.|.+|.|+-+...+||||||+|++.+||.+|-+ |||..+.||+|. |..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~k-fG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE-Vn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEK-FGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIE-VNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHh-hCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEE-Eecc
Confidence 34589999999999999999999999 59999999998886799999999999999999999 999999999999 9988
Q ss_pred CCCCCCC
Q 017846 352 KTPVRPR 358 (365)
Q Consensus 352 ~~~~~~r 358 (365)
-..+..+
T Consensus 172 TarV~n~ 178 (376)
T KOG0125|consen 172 TARVHNK 178 (376)
T ss_pred chhhccC
Confidence 7666543
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.1e-13 Score=113.31 Aligned_cols=75 Identities=29% Similarity=0.424 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
..++||||||+..+++.+|+.+|..||.|.+|.|-..+. |||||+|+++.+|+.|+. |+|..|.|..|+|+.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 467899999999999999999999999999999988654 899999999999999998 999999999999999864
No 73
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.4e-13 Score=108.16 Aligned_cols=78 Identities=32% Similarity=0.413 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
...+++||||||+..++|++|.++|+++|.|..|.+-.|+.+ .-|||||+|-+.++|..|++ ++|..+..++|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 346789999999999999999999999999999999888854 68999999999999999999 999999999999999
Q ss_pred C
Q 017846 252 S 252 (365)
Q Consensus 252 a 252 (365)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 6
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=1e-12 Score=96.69 Aligned_cols=68 Identities=32% Similarity=0.563 Sum_probs=61.8
Q ss_pred EEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 017846 278 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (365)
Q Consensus 278 l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~ 346 (365)
|||+|||+.+++++|+++|+. ||.|..+.+..++ +.++|+|||+|.+.++|.+|++ +++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999 5999999999875 6789999999999999999999 988999999985
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=5.1e-13 Score=127.58 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCH--HHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDE--EGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~--~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
....+||||||++++++++|+.+|..||.|.+|.|++..+ ||||||+|... .++.+||. |||..+.|+.|+|..|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 3456799999999999999999999999999999996544 89999999987 78999998 9999999999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 74
No 76
>smart00362 RRM_2 RNA recognition motif.
Probab=99.42 E-value=1.5e-12 Score=94.72 Aligned_cols=71 Identities=42% Similarity=0.617 Sum_probs=66.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
+|||+|||..+++++|+++|.+||.|..+++..+++.++|+|||+|.+.++|.+|+. +++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999999999999998876678999999999999999998 99999999998874
No 77
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=3.4e-12 Score=97.97 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
++...+-|||.|||.++|.++..++|.+||.|..|+|-..+++ +|-|||.|++..+|.+|++ |+|..+.++.|.|.+.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3556778999999999999999999999999999999887654 6999999999999999999 9999999999999985
Q ss_pred C
Q 017846 253 K 253 (365)
Q Consensus 253 ~ 253 (365)
.
T Consensus 93 q 93 (124)
T KOG0114|consen 93 Q 93 (124)
T ss_pred C
Confidence 4
No 78
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=4e-12 Score=113.25 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=68.9
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~ 352 (365)
.+.+|||+||++.+|+++|+++|+. ||.|.+|+|+++. ..+++|||+|.++++|..|+.|+|..|.+++|. |....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~-It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLSGATIVDQRVC-ITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcCCCeeCCceEE-EEeCc
Confidence 4589999999999999999999997 7999999999984 466899999999999999999999999999999 55533
No 79
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1e-13 Score=116.66 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
..+.-|||||||.++||-||.-+|++||+|+.|.+++|+.+ |+||||+.|++..+...|+. |||..|.||.|+|.+-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35667999999999999999999999999999999999965 79999999999999999998 9999999999999986
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 80
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.5e-11 Score=118.85 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=112.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-----CCce---EEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLR---FAFVEFTDEEGARAALS-LAGTMLGF 244 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-----~~kg---~aFV~F~~~~~A~~Al~-l~g~~i~g 244 (365)
.....++||||+||++++|+.|...|..||.+. |.++...+ -.+| |+|+.|+++..+...+. +.- ..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 344567899999999999999999999999863 55553222 1366 99999999999998885 322 11
Q ss_pred eeEEEeeCCCCCCCC-----CC-----CCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--
Q 017846 245 YPVRVLPSKTAIAPV-----NP-----TFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-- 312 (365)
Q Consensus 245 ~~l~V~~a~~~~~~~-----~~-----~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-- 312 (365)
..+.++.+.+..... .+ .+. ......-.+.+||||++||..++-++|-.+|+..||.|.++-|-.|+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv-~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFV-LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhh-hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 122221111100000 00 000 00111234679999999999999999999999889999999999985
Q ss_pred CCcceEEEEEeCCHHHHHHHHH
Q 017846 313 QHSTRIAFVEFAMAESAIAALN 334 (365)
Q Consensus 313 ~~~kg~afV~F~~~~~A~~Al~ 334 (365)
..++|-|-|+|.+..+-.+||.
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCCCcceeeecccHHHHHHHh
Confidence 6899999999999999999996
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=99.36 E-value=6e-12 Score=91.49 Aligned_cols=71 Identities=34% Similarity=0.571 Sum_probs=66.2
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
+|+|.|||..+++++|+++|++ ||.|..+.+..+.+.++|+|||+|.+.++|..|+. +++..+.|++|+ |+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~-v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR-VE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe-eC
Confidence 5899999999999999999999 69999999998777788999999999999999999 999999999998 63
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.33 E-value=4.2e-12 Score=121.38 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=72.2
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCH--HHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMA--ESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~--~~A~~Al~-lng~~l~g~~l~~V 348 (365)
.....+|||+||++.++++||+.+|.+ ||.|.+|.|++..| ||||||+|.+. .++.+||. |||..+.|+.|+ |
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK-V 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR-L 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE-E
Confidence 345689999999999999999999999 69999999997766 99999999987 78999999 999999999999 9
Q ss_pred ecCCCC
Q 017846 349 SPSKTP 354 (365)
Q Consensus 349 ~~a~~~ 354 (365)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 998764
No 83
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.32 E-value=2.6e-12 Score=110.41 Aligned_cols=79 Identities=27% Similarity=0.366 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
...+|-|-||...++.++|+.+|++||.|.+|.|+.|+.+ ++|||||.|.+..+|+.|++ |+|..|.|++|+|+.++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4567999999999999999999999999999999999965 79999999999999999999 99999999999999986
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 43
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.8e-12 Score=112.32 Aligned_cols=83 Identities=31% Similarity=0.396 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++||||+|..+++|.-|...|-+||.|.+|.++.|-. ++||||||+|...++|.+||. ||+.++.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34568999999999999999999999999999999999874 579999999999999999999 999999999999999
Q ss_pred CCCCCC
Q 017846 252 SKTAIA 257 (365)
Q Consensus 252 a~~~~~ 257 (365)
+++...
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 986543
No 85
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=2e-11 Score=103.17 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=106.5
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
..++|+|+-+.-++++.++|.+||.|..|.+..-+ ..- +||||+|++ +. ||+. |+...
T Consensus 8 ~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~----g~p---------pfafVeFEd-~R------DAeD--AiygR 65 (241)
T KOG0105|consen 8 RIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP----GPP---------PFAFVEFED-PR------DAED--AIYGR 65 (241)
T ss_pred eEEecCCCcchhhccHHHHHhhhcceEEEEeccCC----CCC---------CeeEEEecC-cc------chhh--hhhcc
Confidence 45679999999999999999999999999764421 102 899999999 77 6777 77665
Q ss_pred CCC--CCcccccccCCcccc----------------------------CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCe
Q 017846 156 GYS--QGKRRMNCRTSNAQQ----------------------------DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV 205 (365)
Q Consensus 156 ~~~--~gk~~~~~~~~~~~~----------------------------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i 205 (365)
+.. .|-+ +++..+.. .......|.|.+||++-+.++|+++..+-|.|
T Consensus 66 dGYdydg~r---LRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdv 142 (241)
T KOG0105|consen 66 DGYDYDGCR---LRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDV 142 (241)
T ss_pred cccccCcce---EEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCe
Confidence 544 3433 33222210 01122359999999999999999999999999
Q ss_pred eEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeC
Q 017846 206 VDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG 243 (365)
Q Consensus 206 ~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~ 243 (365)
-...+.+| |++.|+|...++.+-|+. |..+.+.
T Consensus 143 Cfadv~rD-----g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 143 CFADVQRD-----GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeeecc-----cceeeeeeehhhHHHHHHhhcccccc
Confidence 88888887 699999999999999998 7776654
No 86
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=9.1e-12 Score=112.55 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
..-+||||+-|+.+++|.+|+..|+.||.|..|+|++|+. +++|||||+|+.+.+...|.+ .+|..|.|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4567999999999999999999999999999999999984 579999999999999999998 9999999999999875
Q ss_pred C
Q 017846 253 K 253 (365)
Q Consensus 253 ~ 253 (365)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 3
No 87
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=8.2e-12 Score=109.61 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=72.4
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a 351 (365)
....|||++|+..+..++|+++|++| |+|+...|+.|+ +++||||||+|.+.++|.+|+.--.-.|+||+.. +.++
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqf-GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aN-cnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQF-GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKAN-CNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHh-CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccc-cchh
Confidence 45789999999999999999999995 999999999998 7999999999999999999998334578999988 7776
Q ss_pred CCCCCCCC
Q 017846 352 KTPVRPRA 359 (365)
Q Consensus 352 ~~~~~~r~ 359 (365)
---.++|+
T Consensus 89 ~lg~~pR~ 96 (247)
T KOG0149|consen 89 SLGGKPRP 96 (247)
T ss_pred hhcCccCC
Confidence 55444444
No 88
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.6e-11 Score=94.26 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=68.7
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
-.+.|||+|||+.+|.++..++|.+ ||.|..|+|-..++ .+|-|||.|++..+|.+|+. |+|..+.++.|. |-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGk-yg~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~-vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGK-YGTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV-VLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhc-ccceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEE-EEecC
Confidence 3588999999999999999999999 79999999976654 67899999999999999999 999999999999 66543
No 89
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.1e-12 Score=110.80 Aligned_cols=83 Identities=29% Similarity=0.414 Sum_probs=78.1
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
.++|||++|-..++|.-|...|-+| |+|..|.++.|. ++.||||||+|+..++|..||. ||+.+|.||.|+ |.++
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPF-GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grtir-VN~A 87 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPF-GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIR-VNLA 87 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccc-cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEE-Eeec
Confidence 4899999999999999999999995 999999999987 6899999999999999999999 999999999999 9999
Q ss_pred CCCCCCCC
Q 017846 352 KTPVRPRA 359 (365)
Q Consensus 352 ~~~~~~r~ 359 (365)
+|...+-.
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 99877754
No 90
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=8.6e-12 Score=99.38 Aligned_cols=78 Identities=29% Similarity=0.414 Sum_probs=71.6
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
...+.||||+||+..++|++|+++|++ +|+|..|.+--|+ .++=||+||+|-+.++|..|+. ++|+.+..++|+ +
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir-~ 110 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR-I 110 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccccee-e
Confidence 456789999999999999999999999 8999999887776 4678899999999999999999 999999999999 8
Q ss_pred ecC
Q 017846 349 SPS 351 (365)
Q Consensus 349 ~~a 351 (365)
.|.
T Consensus 111 D~D 113 (153)
T KOG0121|consen 111 DWD 113 (153)
T ss_pred ecc
Confidence 874
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=4e-11 Score=87.57 Aligned_cols=72 Identities=46% Similarity=0.639 Sum_probs=66.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
+|+|+|||..+++++|+++|..||.|..+.+..++. .++|+|||+|.+.++|..|+. +++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998774 358999999999999999998 999999999998864
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=2.3e-11 Score=87.98 Aligned_cols=68 Identities=40% Similarity=0.587 Sum_probs=62.6
Q ss_pred EcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 183 VSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 183 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
|+|||..+++++|+++|++||.|..+.+..++. .++|+|||+|.+.++|.+|+. +++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 589999999999999999999999999998763 468999999999999999998 99999999998874
No 93
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=9.8e-12 Score=104.35 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=69.5
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKT 353 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~ 353 (365)
.+.|||+||+..+++.||...|.. ||.|.+|.|.+.+ -|||||+|+++-+|..|+. |+|..|.|..|+ |+++.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsvWvArnP---PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~r-VE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSK-YGPLRSVWVARNP---PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIR-VELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHh-cCcceeEEEeecC---CCceEEeccCcccHHHHHhhcCCccccCceEE-EEeecC
Confidence 478999999999999999999998 7999999998854 4799999999999999999 999999999999 998764
Q ss_pred CC
Q 017846 354 PV 355 (365)
Q Consensus 354 ~~ 355 (365)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 43
No 94
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.25 E-value=7.1e-11 Score=103.44 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=106.1
Q ss_pred HHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcCCC--CCcccccc
Q 017846 89 RDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS--QGKRRMNC 166 (365)
Q Consensus 89 ~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~--~gk~~~~~ 166 (365)
+.|..+|++||.|.+|.+.+ |.+. | |=|||.|.+ .+ .|.. |++.+++. -||+ +
T Consensus 28 rsL~~LFsqfG~ildI~a~k---t~Km-R---------GQA~VvFk~-~~------~As~--A~r~l~gfpFygK~---m 82 (221)
T KOG4206|consen 28 RSLYLLFSQFGKILDISAFK---TPKM-R---------GQAFVVFKE-TE------AASA--ALRALQGFPFYGKP---M 82 (221)
T ss_pred HHHHHHHHhhCCeEEEEecC---CCCc-c---------CceEEEecC-hh------HHHH--HHHHhcCCcccCch---h
Confidence 44555999999999998766 3444 6 999999999 44 3666 77777666 5666 3
Q ss_pred cCCcccc----------------------------------------------------CCCCCcEEEEcCCCCCCcHHH
Q 017846 167 RTSNAQQ----------------------------------------------------DEVIRRTVYVSDIDQQVTEEQ 194 (365)
Q Consensus 167 ~~~~~~~----------------------------------------------------~~~~~~~lfV~nLp~~~te~~ 194 (365)
++.++.. .......+|+.|||.+++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 3322210 012345699999999999999
Q ss_pred HHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeC-CeeEEEeeCC
Q 017846 195 LATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLPSK 253 (365)
Q Consensus 195 L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~-g~~l~V~~a~ 253 (365)
|..+|.+|.....++++.... +.|||+|.+...|..|.. +.+..|. ...+.|.+++
T Consensus 163 l~~lf~qf~g~keir~i~~~~---~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPRS---GIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhCcccceeEeccCCC---ceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999987543 799999999999999998 9998886 6778887763
No 95
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.1e-12 Score=110.62 Aligned_cols=77 Identities=29% Similarity=0.393 Sum_probs=72.0
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
.+.-|||+|||+.+||.||..+|++ ||+|..|.+++|+ |+++||||++|++.-+..-|+. |||..|.||.|+ |..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSq-yGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir-VDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQ-YGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR-VDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeec-cCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEE-eee
Confidence 3578999999999999999999999 7999999999998 7899999999999999999999 999999999999 876
Q ss_pred CC
Q 017846 351 SK 352 (365)
Q Consensus 351 a~ 352 (365)
.-
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 43
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.24 E-value=4.7e-11 Score=86.35 Aligned_cols=68 Identities=32% Similarity=0.535 Sum_probs=62.5
Q ss_pred eeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 280 CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 280 V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
|.|||..+++++|+++|++ ||.|..+.+..++ +.++|+|||+|.+.++|..|+. +++..+.|++|+ |+
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~-v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLK-VK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEE-eC
Confidence 5799999999999999999 6999999998875 5788999999999999999999 999999999998 63
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.1e-11 Score=109.41 Aligned_cols=143 Identities=22% Similarity=0.261 Sum_probs=108.7
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
..++|.|+|...+++|.++|..||.|.++.+.. |||||.|.+ .. ||.. |+..+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------------------gf~fv~fed-~r------da~D--av~~l 55 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN------------------GFGFVEFED-PR------DADD--AVHDL 55 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec------------------ccceeccCc-hh------hhhc--ccchh
Confidence 467899999999999999999999998886533 999999998 55 4555 55555
Q ss_pred CCC--CCcc----------------cccccCCcc---ccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC
Q 017846 156 GYS--QGKR----------------RMNCRTSNA---QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP 214 (365)
Q Consensus 156 ~~~--~gk~----------------~~~~~~~~~---~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~ 214 (365)
+.. .|.. .-..+..+. .......+.++|.+++..+.+++|.+.|.++|.+....+
T Consensus 56 ~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---- 131 (216)
T KOG0106|consen 56 DGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---- 131 (216)
T ss_pred cCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----
Confidence 544 2222 000000001 111234456999999999999999999999999866555
Q ss_pred CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 215 NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 215 ~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
.++++||+|+.+++|.+|+. +++..+.++.|.+..
T Consensus 132 --~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 132 --RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred --hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 23699999999999999999 999999999999944
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=1.2e-10 Score=85.06 Aligned_cols=72 Identities=36% Similarity=0.577 Sum_probs=66.2
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
+|+|.|||..+++++|+++|+. ||.|..+.+..+. +.++|+|||+|.+.++|..|++ +++..+.|+++. |.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~-v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR-VEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE-EeC
Confidence 4899999999999999999999 5999999998876 3578999999999999999999 999999999999 764
No 99
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=7.6e-11 Score=82.80 Aligned_cols=55 Identities=35% Similarity=0.480 Sum_probs=50.4
Q ss_pred HHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 195 LATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 195 L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
|+++|++||.|..+.+..+. +++|||+|.+.++|.+|++ |||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998776 4799999999999999998 9999999999999985
No 100
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.21 E-value=2.2e-11 Score=104.69 Aligned_cols=78 Identities=27% Similarity=0.390 Sum_probs=72.8
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
...+|.|-||-+-++-++|+.+|++ ||.|-+|.|++|. ..++|||||.|....+|+.|++ |+|..|.|+.|+ |++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFek-YG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr-Vq~ 89 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEK-YGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR-VQM 89 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHH-hCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee-ehh
Confidence 3478999999999999999999999 7999999999998 5799999999999999999999 999999999999 888
Q ss_pred CCC
Q 017846 351 SKT 353 (365)
Q Consensus 351 a~~ 353 (365)
|+=
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 763
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.19 E-value=4.3e-11 Score=116.79 Aligned_cols=76 Identities=34% Similarity=0.479 Sum_probs=72.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
+.|||||||+++++++|.++|+..|.|.+++++.|+.+ .+||||++|.+.++|..|++ |||.++.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 78999999999999999999999999999999999854 69999999999999999999 999999999999999753
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.19 E-value=1e-10 Score=82.19 Aligned_cols=55 Identities=31% Similarity=0.536 Sum_probs=49.9
Q ss_pred HHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 292 IKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 292 L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
|+++|++ ||.|..+.+.++. +++|||+|.+.++|..|+. |||..+.|++|+ |+|+
T Consensus 1 L~~~f~~-fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~-V~~a 56 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLK-VSYA 56 (56)
T ss_dssp HHHHHTT-TS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEE-EEEE
T ss_pred ChHHhCC-cccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEE-EEEC
Confidence 7899999 6999999998875 4799999999999999999 999999999999 9885
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=4.2e-11 Score=96.32 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=73.8
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
+..+..|||.++.+..+|++|.+.|.. ||.|..+.+--|. |..+|||+|+|++.++|++|+. +||..|.|..|. |
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~-V 146 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS-V 146 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhh-cccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee-E
Confidence 345689999999999999999999999 6999999988776 7899999999999999999999 999999999999 9
Q ss_pred ecCCCC
Q 017846 349 SPSKTP 354 (365)
Q Consensus 349 ~~a~~~ 354 (365)
.|+-..
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 997433
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=9.2e-11 Score=106.11 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=73.7
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
..+-+||||.-|+..++|..|+..|+. ||.|..|.|++|. ++++|||||+|++.-+...|.. .+|..|+|+.|. |
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~-V 175 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL-V 175 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHh-cCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE-E
Confidence 356799999999999999999999998 7999999999997 8999999999999999999999 999999999999 8
Q ss_pred ecCC
Q 017846 349 SPSK 352 (365)
Q Consensus 349 ~~a~ 352 (365)
..-.
T Consensus 176 DvER 179 (335)
T KOG0113|consen 176 DVER 179 (335)
T ss_pred Eecc
Confidence 7754
No 105
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=4.3e-11 Score=96.21 Aligned_cols=74 Identities=26% Similarity=0.341 Sum_probs=70.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
.|||.++.+..+|++|.+.|..||+|..+.+-.|+.+ .+|||+|+|++.++|++|+. +||..+.|..|.|.|+-
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 4999999999999999999999999999999999866 49999999999999999998 99999999999999974
No 106
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=5.7e-12 Score=127.66 Aligned_cols=217 Identities=17% Similarity=0.106 Sum_probs=159.5
Q ss_pred HHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcCCCCCcccccccCC
Q 017846 90 DLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYSQGKRRMNCRTS 169 (365)
Q Consensus 90 ~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~~gk~~~~~~~~ 169 (365)
.++..|..+|.|..|+++.-....++ . .++++.+.. .. .++. |...-...-+-+...+-..
T Consensus 588 ~~~~~~k~~~~vekv~~p~~g~k~h~-q---------~~~~~~~s~-~~------~~es--at~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 588 IQRRQFKGEGNVEKVNGPKRGFKAHE-Q---------PQQQKVQSK-HG------SAES--ATVPAGGALANRSAAVGLA 648 (881)
T ss_pred hhHHHhhcccccccccCccccccccc-c---------chhhhhhcc-cc------chhh--cccccccccCCccccCCCC
Confidence 57889999999999998774433334 2 378888877 44 3444 3333222222221111122
Q ss_pred ccccCC----------CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEec--CCCCCceEEEEEeCCHHHHHHHHHh
Q 017846 170 NAQQDE----------VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG--DPNSVLRFAFVEFTDEEGARAALSL 237 (365)
Q Consensus 170 ~~~~~~----------~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~--d~~~~kg~aFV~F~~~~~A~~Al~l 237 (365)
.+.... ....++||+||+..+.+.+|...|..+|.+..+++.. +.++-||+||+.|..++++.+|+.+
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 111111 1123599999999999999999999999988877763 3345699999999999999999995
Q ss_pred CCceeCCeeEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcc
Q 017846 238 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHST 316 (365)
Q Consensus 238 ~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~k 316 (365)
....+.| + ..|+|.|.|+..|.++|+.++..+ |++.+.+++... |+++
T Consensus 729 ~d~~~~g--------K----------------------~~v~i~g~pf~gt~e~~k~l~~~~-gn~~~~~~vt~r~gkpk 777 (881)
T KOG0128|consen 729 RDSCFFG--------K----------------------ISVAISGPPFQGTKEELKSLASKT-GNVTSLRLVTVRAGKPK 777 (881)
T ss_pred hhhhhhh--------h----------------------hhhheeCCCCCCchHHHHhhcccc-CCccccchhhhhccccc
Confidence 5444444 1 459999999999999999999995 999999887766 7999
Q ss_pred eEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCC
Q 017846 317 RIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPVRP 357 (365)
Q Consensus 317 g~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~~~ 357 (365)
|.|+|.|.+..+|.+++. .+...+.-+-+. |..+.|+..+
T Consensus 778 g~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~-v~vsnp~~~K 818 (881)
T KOG0128|consen 778 GKARVDYNTEADASRKVASVDVAGKRENNGE-VQVSNPERDK 818 (881)
T ss_pred cceeccCCCcchhhhhcccchhhhhhhcCcc-ccccCCcccc
Confidence 999999999999999998 888888777777 7776664433
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=99.15 E-value=2e-10 Score=84.57 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=51.8
Q ss_pred HHHHHHHhh----hCCCeeEEE-EecCC----CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 192 EEQLATLFL----TCGQVVDCR-ICGDP----NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 192 e~~L~~~F~----~~G~i~~v~-i~~d~----~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
+++|+++|+ +||.|.++. ++.++ +.++|||||+|.+.++|.+|+. |||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999995 66665 4479999999999999999999 9999999999986
No 108
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.15 E-value=2.3e-10 Score=105.01 Aligned_cols=77 Identities=35% Similarity=0.559 Sum_probs=73.0
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
..+|||+|||..+++++|+++|.+ ||.|..+.+..+. +.++|||||+|.+.++|..|+. ++|..|.|++|+ |.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~-v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR-VQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeE-eecc
Confidence 589999999999999999999999 6999999999886 7899999999999999999999 999999999999 9997
Q ss_pred CC
Q 017846 352 KT 353 (365)
Q Consensus 352 ~~ 353 (365)
..
T Consensus 193 ~~ 194 (306)
T COG0724 193 QP 194 (306)
T ss_pred cc
Confidence 64
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=3.6e-10 Score=83.27 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=51.3
Q ss_pred HHHHHHHhh----hcCCceEEEE-EeccC----CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 289 QGDIKLFFE----SVCGEVQRLR-LLGDY----QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 289 e~~L~~~F~----~~~G~I~~v~-i~~d~----~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
+++|+++|+ + ||.|.+|. |+.++ +.++|||||+|.+.++|.+|+. |||..+.|+.|+ +
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~-~ 69 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVK-A 69 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE-e
Confidence 578899998 8 59999995 55544 6789999999999999999999 999999999998 5
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=3.1e-10 Score=111.49 Aligned_cols=172 Identities=22% Similarity=0.335 Sum_probs=135.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhC-----------C-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTC-----------G-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGF 244 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~-----------G-~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g 244 (365)
..+.+||+++|+.++++.+..+|..- | .+..+.+-..+ .|||++|.+.++|..|+.+++..+.|
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~----nfa~ie~~s~~~at~~~~~~~~~f~g 249 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK----NFAFIEFRSISEATEAMALDGIIFEG 249 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc----cceeEEecCCCchhhhhcccchhhCC
Confidence 34569999999999999999999753 3 36677776554 59999999999999999999999999
Q ss_pred eeEEEeeCCCCCCCCC----C----CCCCCCc-hhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--C
Q 017846 245 YPVRVLPSKTAIAPVN----P----TFLPRSE-DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--Q 313 (365)
Q Consensus 245 ~~l~V~~a~~~~~~~~----~----~~~~~~~-~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~ 313 (365)
+++++........... . .+..... .........+||.+||..++++.++++.+.| |.+....+..+. +
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~f-g~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSF-GPLKAFRLVKDSATG 328 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhc-ccchhheeecccccc
Confidence 9988765432211110 0 0000000 1113345789999999999999999999995 999999998886 5
Q ss_pred CcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 017846 314 HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 314 ~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~ 354 (365)
.++||||.+|.+..-...|+. |||..+++++|. |..+-..
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv-vq~A~~g 369 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV-VQRAIVG 369 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeE-eehhhcc
Confidence 899999999999999999999 999999999999 8887543
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.5e-09 Score=105.22 Aligned_cols=150 Identities=18% Similarity=0.128 Sum_probs=102.9
Q ss_pred hhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhh
Q 017846 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (365)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~ 153 (365)
.++.++|||+|+.++++|...|..||.+. |..++ +...+. +. .+.+..||.|+.|.+ +.. .+. -+.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~-k~~~~~-~~--ppkGs~~YvflvFe~-E~s------V~~--Ll~ 324 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPG-KANSRG-RA--PPKGSYGYVFLVFED-ERS------VQS--LLS 324 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCC-Cccccc-cC--CCCCcccEEEEEecc-hHH------HHH--HHH
Confidence 45778899999999999999999999975 33343 222222 21 122222599999999 551 222 121
Q ss_pred hcCCCCCccc------------cc---ccCCc------cccCCCCCcEEEEcCCCCCCcHHHHHHHhh-hCCCeeEEEEe
Q 017846 154 RNGYSQGKRR------------MN---CRTSN------AQQDEVIRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRIC 211 (365)
Q Consensus 154 ~~~~~~gk~~------------~~---~~~~~------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~ 211 (365)
.-....++-. +. |++.. ....-...+|||||+||.-++-++|..+|+ -||.|..+-|=
T Consensus 325 aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGID 404 (520)
T KOG0129|consen 325 ACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGID 404 (520)
T ss_pred HHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEec
Confidence 1111111111 11 22111 123345678999999999999999999999 89999999999
Q ss_pred cCCC--CCceEEEEEeCCHHHHHHHHHh
Q 017846 212 GDPN--SVLRFAFVEFTDEEGARAALSL 237 (365)
Q Consensus 212 ~d~~--~~kg~aFV~F~~~~~A~~Al~l 237 (365)
.|+. -.+|-|=|+|.+..+-.+||..
T Consensus 405 tD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 405 TDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCCCCCcceeeecccHHHHHHHhh
Confidence 9953 3799999999999999999974
No 112
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.05 E-value=3.9e-10 Score=110.11 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=74.2
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
+.|||+|+|+++++++|..+|+. +|.|.++++..|. |+.+||||++|.+.++|..|+. |||.++.|++|+ |.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~-v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLR-VNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEE-eeccc
Confidence 78999999999999999999999 5999999999887 7899999999999999999999 999999999999 99987
Q ss_pred CCCC
Q 017846 353 TPVR 356 (365)
Q Consensus 353 ~~~~ 356 (365)
....
T Consensus 97 ~~~~ 100 (435)
T KOG0108|consen 97 NRKN 100 (435)
T ss_pred ccch
Confidence 6543
No 113
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=1.6e-09 Score=100.12 Aligned_cols=76 Identities=21% Similarity=0.390 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH--hCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS--LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~--l~g~~i~g~~l~V~~a 252 (365)
+..-++|||++|-..++|.+|+++|.+||+|.++++...+ ++|||+|.+.++|+.|.+ ++...|.|++|.|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4456789999999999999999999999999999998765 699999999999999986 8888899999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 75
No 114
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.3e-10 Score=100.80 Aligned_cols=148 Identities=23% Similarity=0.290 Sum_probs=120.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....+||||+|+...++|+-|.++|-+-|.|..|.|+.++....-||||.|.++-.+.-|++ +||..+.++++.|++-.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34578999999999999999999999999999999998876543399999999999999999 99999999999887631
Q ss_pred CCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHH
Q 017846 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAA 332 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~A 332 (365)
. ... .-|+..++++.+...|+.. |.+..+++..+. ++.+.++|+.+....+.-.+
T Consensus 86 G-----------~sh------------apld~r~~~ei~~~v~s~a-~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 86 G-----------NSH------------APLDERVTEEILYEVFSQA-GPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred C-----------CCc------------chhhhhcchhhheeeeccc-CCCCCccccccccCCccCccchhhhhhhcCcHH
Confidence 0 000 0156678999999999984 999999998775 67788999999888777778
Q ss_pred HH-hCCceeCCeeeE
Q 017846 333 LN-CSGAVLGSLPIR 346 (365)
Q Consensus 333 l~-lng~~l~g~~l~ 346 (365)
+. -.+..+.-+++.
T Consensus 142 ~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 142 LDLYQGLELFQKKVT 156 (267)
T ss_pred hhhhcccCcCCCCcc
Confidence 77 666555444444
No 115
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.96 E-value=3.2e-09 Score=92.58 Aligned_cols=155 Identities=15% Similarity=0.229 Sum_probs=111.5
Q ss_pred ecccchhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccc
Q 017846 69 NASDNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHT 148 (365)
Q Consensus 69 ~~~~~~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~ 148 (365)
+..+.-+..++-||+-+...++|+.+|..|-.-+.+.+......++.-+ .+||+.|.+ .. +|..
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~---------pvaFatF~s-~q------~A~a 92 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCK---------PVAFATFTS-HQ------FALA 92 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCcccc---------ceEEEEecc-hH------HHHH
Confidence 3445567888999999999999999999998888887766555443314 899999999 56 5777
Q ss_pred hhhhhhcCCC-----CCcc-cccccCCcc-------------------------cc------------------------
Q 017846 149 TTRRKRNGYS-----QGKR-RMNCRTSNA-------------------------QQ------------------------ 173 (365)
Q Consensus 149 ~~a~~~~~~~-----~gk~-~~~~~~~~~-------------------------~~------------------------ 173 (365)
|+..+|+. .+.. +|....... ++
T Consensus 93 --amnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~ 170 (284)
T KOG1457|consen 93 --AMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNAD 170 (284)
T ss_pred --HHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccc
Confidence 88777765 1111 111100000 00
Q ss_pred ---C----------------C----------------CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCc
Q 017846 174 ---D----------------E----------------VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVL 218 (365)
Q Consensus 174 ---~----------------~----------------~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~k 218 (365)
. + ..--||||.||.+.++|++|+.+|+.|......+|....+ -
T Consensus 171 al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g--~ 248 (284)
T KOG1457|consen 171 ALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG--M 248 (284)
T ss_pred cCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC--c
Confidence 0 0 0012599999999999999999999998877777755433 3
Q ss_pred eEEEEEeCCHHHHHHHHH-hCCceeC
Q 017846 219 RFAFVEFTDEEGARAALS-LAGTMLG 243 (365)
Q Consensus 219 g~aFV~F~~~~~A~~Al~-l~g~~i~ 243 (365)
..||++|++.+.|..||. |.|..|.
T Consensus 249 ~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 249 PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred ceEeecHHHHHHHHHHHHHhhcceec
Confidence 589999999999999998 9887663
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=1.2e-09 Score=111.59 Aligned_cols=161 Identities=18% Similarity=0.279 Sum_probs=133.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
..+++||+|||+..+++.+|+..|..+|.|.+|.|-..+ ++.--||||.|.+-..+-.|.. +.+..|.--.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 346789999999999999999999999999999998764 4445799999999999999986 88877765555655542
Q ss_pred CCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 017846 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 333 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al 333 (365)
. .....+.+++++|+..+....|.+.|..| |.|..|.+-... -||+|.|++...|+.|+
T Consensus 450 ~----------------kst~ttr~~sgglg~w~p~~~l~r~fd~f-Gpir~Idy~hgq----~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 450 P----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRF-GPIRIIDYRHGQ----PYAYIQYESPPAAQAAT 508 (975)
T ss_pred c----------------ccccceeeccCCCCCCChHHHHHHHhhcc-CcceeeecccCC----cceeeecccCccchhhH
Confidence 1 13345789999999999999999999995 999988774432 39999999999999999
Q ss_pred H-hCCceeCC--eeeEEeecCCCCCCCC
Q 017846 334 N-CSGAVLGS--LPIRLVSPSKTPVRPR 358 (365)
Q Consensus 334 ~-lng~~l~g--~~l~~V~~a~~~~~~r 358 (365)
. |-|..|++ ++|. |.++.++-..+
T Consensus 509 ~~~rgap~G~P~~r~r-vdla~~~~~~P 535 (975)
T KOG0112|consen 509 HDMRGAPLGGPPRRLR-VDLASPPGATP 535 (975)
T ss_pred HHHhcCcCCCCCcccc-cccccCCCCCh
Confidence 9 99999966 6799 99988775543
No 117
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.88 E-value=1.9e-09 Score=95.69 Aligned_cols=160 Identities=21% Similarity=0.310 Sum_probs=123.8
Q ss_pred EEEEcCCCCCCcHHH-H--HHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 180 TVYVSDIDQQVTEEQ-L--ATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 180 ~lfV~nLp~~~te~~-L--~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
..|++++-.++..+- | ...|+.|-.+...+++.+. +.-++++|+.|.....-.++-. -+++.++-.++++.-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 366677666665554 3 6778888888888888876 4468999999998877777766 677777766666554321
Q ss_pred CCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHH
Q 017846 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 332 (365)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~A 332 (365)
- ......+......+||++-|..+++++-|-+.|.+ |..-...++++|+ ++++||+||.|.+..++..|
T Consensus 178 w--------edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 178 W--------EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred c--------CCcccccCccccceeecccccccccHHHHHHHHHh-ccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 1 11111222334578999999999999999999999 4999999999998 78999999999999999999
Q ss_pred HH-hCCceeCCeeeEEee
Q 017846 333 LN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 333 l~-lng~~l~g~~l~~V~ 349 (365)
+. |+|..++.++|+ +.
T Consensus 249 mrem~gkyVgsrpik-lR 265 (290)
T KOG0226|consen 249 MREMNGKYVGSRPIK-LR 265 (290)
T ss_pred HHhhcccccccchhH-hh
Confidence 99 999999999988 43
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.82 E-value=9e-09 Score=103.72 Aligned_cols=74 Identities=24% Similarity=0.348 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
.++|||||+|+..++++||..+|+.||+|.+|.++.. ||||||.+...++|.+|+. |....+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 4678999999999999999999999999999998764 5899999999999999998 999999999999999853
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=1.2e-08 Score=94.33 Aligned_cols=76 Identities=24% Similarity=0.422 Sum_probs=69.4
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH--hCCceeCCeeeEEee
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN--CSGAVLGSLPIRLVS 349 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~--lng~~l~g~~l~~V~ 349 (365)
....++|||++|-..++|.+|+++|-+ ||+|.++.+.... ++|||+|.+.++|..|.+ +|...|+|++|+ |.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~-i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLK-IK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhh-cCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEE-EE
Confidence 445689999999999999999999999 7999999998754 499999999999999997 888889999999 88
Q ss_pred cCCC
Q 017846 350 PSKT 353 (365)
Q Consensus 350 ~a~~ 353 (365)
|+++
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9988
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.79 E-value=8.1e-09 Score=96.42 Aligned_cols=172 Identities=24% Similarity=0.223 Sum_probs=130.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHhCCc-eeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGT-MLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~l~g~-~i~g~~l~V~~a~ 253 (365)
...++|++++...+.+.++..++..+|......+.... ..++|++++.|...+.+..|+.+.+. .+.+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999988777766643 45799999999999999999996664 4445444443332
Q ss_pred CCCCCCCCCCCCCCchhhcccccEEE-eeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHH
Q 017846 254 TAIAPVNPTFLPRSEDEREMCSRTIY-CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAI 330 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~ 330 (365)
...... ..+..... .....++| +.+|+..+++++|+..|.. +|.|..++++.+. +.++|||||.|.....+.
T Consensus 167 ~~~~~~---~n~~~~~~-~~~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 167 RRGLRP---KNKLSRLS-SGPSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred cccccc---cchhcccc-cCccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCccchhhhhhhhhhhchhHH
Confidence 111000 00111111 22334555 9999999999999999987 6999999998876 689999999999999999
Q ss_pred HHHHhCCceeCCeeeEEeecCCCC
Q 017846 331 AALNCSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 331 ~Al~lng~~l~g~~l~~V~~a~~~ 354 (365)
.++......+.++++. +...++.
T Consensus 242 ~~~~~~~~~~~~~~~~-~~~~~~~ 264 (285)
T KOG4210|consen 242 LALNDQTRSIGGRPLR-LEEDEPR 264 (285)
T ss_pred HHhhcccCcccCcccc-cccCCCC
Confidence 9987666778999999 8887655
No 121
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.76 E-value=1.7e-08 Score=101.81 Aligned_cols=78 Identities=28% Similarity=0.431 Sum_probs=71.6
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
..+++||||++|+..++|.||..+|++ ||.|.+|.++. ++|+|||+...+.+|.+|+. |+...+.++.|+ |.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Ik-i~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIK-IAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHh-cccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeE-Eee
Confidence 457899999999999999999999999 59999999977 45699999999999999999 999999999999 999
Q ss_pred CCCCC
Q 017846 351 SKTPV 355 (365)
Q Consensus 351 a~~~~ 355 (365)
+....
T Consensus 492 a~g~G 496 (894)
T KOG0132|consen 492 AVGKG 496 (894)
T ss_pred eccCC
Confidence 86543
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.5e-08 Score=93.77 Aligned_cols=78 Identities=23% Similarity=0.481 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
+...|||.-|.+-++.++|.-+|+.||.|.+|.+++|..+ +.-||||+|++.+++++|.- |....|..++|.|.+++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4567999999999999999999999999999999999865 68899999999999999985 99999999999999975
Q ss_pred C
Q 017846 254 T 254 (365)
Q Consensus 254 ~ 254 (365)
.
T Consensus 318 S 318 (479)
T KOG0415|consen 318 S 318 (479)
T ss_pred h
Confidence 3
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.6e-08 Score=93.66 Aligned_cols=82 Identities=20% Similarity=0.316 Sum_probs=74.9
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
.++.+.|||--|.+-++++||.-+|+.| |.|.+|.|++|. +.+-.||||+|++.+++.+|.- |++..|.+++|+ |
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrF-G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH-V 313 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRF-GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH-V 313 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhc-ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE-e
Confidence 3456899999999999999999999995 999999999997 6788899999999999999998 999999999999 9
Q ss_pred ecCCCCC
Q 017846 349 SPSKTPV 355 (365)
Q Consensus 349 ~~a~~~~ 355 (365)
.|+++-.
T Consensus 314 DFSQSVs 320 (479)
T KOG0415|consen 314 DFSQSVS 320 (479)
T ss_pred ehhhhhh
Confidence 9986543
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=3.2e-08 Score=96.55 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
...++|||.+|...+--.+|+.+|++||.|+-.+++....+ .+.|+||++.+.++|.++|. |+.+.|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34578999999999999999999999999999999987654 38999999999999999999 9999999999999998
Q ss_pred CCCC
Q 017846 253 KTAI 256 (365)
Q Consensus 253 ~~~~ 256 (365)
+..+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7543
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.69 E-value=5.8e-08 Score=84.02 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhC-CCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
.....-+||..+|.-+.+.+|..+|.+| |.|..+++.+.+.+ |||||||+|++++.|.-|-+ ||+..+.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3345569999999999999999999998 77888888887744 79999999999999999998 99999999999988
Q ss_pred eCC
Q 017846 251 PSK 253 (365)
Q Consensus 251 ~a~ 253 (365)
.-.
T Consensus 126 vmp 128 (214)
T KOG4208|consen 126 VMP 128 (214)
T ss_pred EeC
Confidence 753
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.68 E-value=4.3e-08 Score=84.79 Aligned_cols=80 Identities=24% Similarity=0.281 Sum_probs=71.2
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
.....+++..+|..+.+.++..+|.+|.|.|..+++.+++ |.++|||||+|++.+.|.-|-+ ||++.|.++-|. +.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~-c~ 125 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE-CH 125 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee-eE
Confidence 3456799999999999999999999976888888998876 7899999999999999999999 999999999998 76
Q ss_pred cCCC
Q 017846 350 PSKT 353 (365)
Q Consensus 350 ~a~~ 353 (365)
+-.+
T Consensus 126 vmpp 129 (214)
T KOG4208|consen 126 VMPP 129 (214)
T ss_pred EeCc
Confidence 6433
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.67 E-value=2.5e-08 Score=88.72 Aligned_cols=141 Identities=14% Similarity=0.187 Sum_probs=105.3
Q ss_pred HHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcCCC-CCcccccccCC
Q 017846 91 LVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS-QGKRRMNCRTS 169 (365)
Q Consensus 91 L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~-~gk~~~~~~~~ 169 (365)
+...|+.+-.+....+.++...... +++|+.|.. .. +... +-...+.. .|++. +|..
T Consensus 116 ~~~~f~~~p~L~ktk~v~~~p~~~~-----------~~~~~~~k~-s~-------a~~k-~~~~~~~Kki~~~~--VR~a 173 (290)
T KOG0226|consen 116 LPVVFSEYPSLVKTKLVRDRPQPIR-----------PEAFESFKA-SD-------ALLK-AETEKEKKKIGKPP--VRLA 173 (290)
T ss_pred chhhhccchhhhhhhhhhcCCCccC-----------cccccCcch-hh-------hhhh-hccccccccccCcc--eeec
Confidence 4677888888888888888877766 999999987 22 2110 11111111 33331 2222
Q ss_pred ----ccc----cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hC
Q 017846 170 ----NAQ----QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LA 238 (365)
Q Consensus 170 ----~~~----~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~ 238 (365)
|.+ .-+...-.||+|.|..+++++.|-..|.+|-.....++++|+. +++||+||.|.+..++..|+. |+
T Consensus 174 ~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 174 AGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred cccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc
Confidence 221 1233456799999999999999999999999999999999985 479999999999999999998 99
Q ss_pred CceeCCeeEEEeeCC
Q 017846 239 GTMLGFYPVRVLPSK 253 (365)
Q Consensus 239 g~~i~g~~l~V~~a~ 253 (365)
|..++.++|.+..+.
T Consensus 254 gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 254 GKYVGSRPIKLRKSE 268 (290)
T ss_pred ccccccchhHhhhhh
Confidence 999999999887654
No 128
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.63 E-value=5.6e-07 Score=83.44 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=109.3
Q ss_pred hhhhhcCCccccccHHHHHHHHhccCCcce--------EEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCccccc
Q 017846 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAA--------EFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTN 145 (365)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~--------v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~d 145 (365)
+...++-||+-+.|++++.++|++||-|.. |++.++..+.- + |=|.+.|...++
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~l--K---------GDaLc~y~K~ES------- 195 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKL--K---------GDALCCYIKRES------- 195 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCc--c---------CceEEEeecccH-------
Confidence 335678999999999999999999997753 45555554222 3 888899988444
Q ss_pred ccchhhhhhcCCC--CCcccccccCCccc----------------------------------------cCCCCCcEEEE
Q 017846 146 GHTTTRRKRNGYS--QGKRRMNCRTSNAQ----------------------------------------QDEVIRRTVYV 183 (365)
Q Consensus 146 a~~~~a~~~~~~~--~gk~~~~~~~~~~~----------------------------------------~~~~~~~~lfV 183 (365)
+.. |++.++.. .|+. +++..++ ......++|.+
T Consensus 196 VeL--A~~ilDe~~~rg~~---~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~ 270 (382)
T KOG1548|consen 196 VEL--AIKILDEDELRGKK---LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVIL 270 (382)
T ss_pred HHH--HHHHhCcccccCcE---EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEe
Confidence 555 66666554 2322 2221111 11234567999
Q ss_pred cCCCC----CCc-------HHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 184 SDIDQ----QVT-------EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 184 ~nLp~----~~t-------e~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
.|+=. ..+ +++|++-..+||.|.+|.|.-. .+.|.+-|.|.+.++|..|++ |+|..+.||.|....
T Consensus 271 kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~--hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i 348 (382)
T KOG1548|consen 271 KNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR--HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASI 348 (382)
T ss_pred eecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc--CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEE
Confidence 99831 223 3556677889999999988632 235899999999999999999 999999999998876
Q ss_pred C
Q 017846 252 S 252 (365)
Q Consensus 252 a 252 (365)
.
T Consensus 349 ~ 349 (382)
T KOG1548|consen 349 W 349 (382)
T ss_pred e
Confidence 5
No 129
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.60 E-value=3.1e-08 Score=92.55 Aligned_cols=160 Identities=18% Similarity=0.204 Sum_probs=120.8
Q ss_pred hhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
...+.|.++|..++.+...++.++|.+..+.+........+ + ||+++.|.. .+ .+.. +++.
T Consensus 89 ~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~s-k---------~~~s~~f~~-ks------~~~~--~l~~ 149 (285)
T KOG4210|consen 89 STFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSS-K---------GGLSVHFAG-KS------QFFA--ALEE 149 (285)
T ss_pred ccccccccccchhhccccccchhhcCcccchhhhhcccccc-c---------cceeecccc-HH------HHHH--HHHh
Confidence 35677999999999999999999999999998888887777 7 999999998 44 2444 4443
Q ss_pred cCC-C----CCcccccccCC------ccccCCCCCcEEE-EcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceE
Q 017846 155 NGY-S----QGKRRMNCRTS------NAQQDEVIRRTVY-VSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRF 220 (365)
Q Consensus 155 ~~~-~----~gk~~~~~~~~------~~~~~~~~~~~lf-V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~ 220 (365)
... . .+...++-... ..........++| |++|+..+++++|+.+|..+|.|..++++.++.+ .+||
T Consensus 150 s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~ 229 (285)
T KOG4210|consen 150 SGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGF 229 (285)
T ss_pred hhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhh
Confidence 331 1 11111111110 0011122334566 9999999999999999999999999999998865 5999
Q ss_pred EEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 017846 221 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 221 aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~ 253 (365)
|||.|.....+..++......+.++++.+....
T Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 230 AYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred hhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 999999999999888766777889999999875
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=5.5e-08 Score=95.18 Aligned_cols=179 Identities=17% Similarity=0.180 Sum_probs=116.8
Q ss_pred ccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 166 CRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g 244 (365)
.+...+.......++|+|-|||.++++++|+.+|+.||+|..|+.-+.+ +|.+||+|-+..+|++|++ |++..+.|
T Consensus 63 ~~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 63 LRPDNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred CCcCCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 3334445556678899999999999999999999999999997665443 5899999999999999998 99999999
Q ss_pred eeEEEeeCCCC-CCC-CCCCC-----CCCCchhh-cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcc
Q 017846 245 YPVRVLPSKTA-IAP-VNPTF-----LPRSEDER-EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHST 316 (365)
Q Consensus 245 ~~l~V~~a~~~-~~~-~~~~~-----~~~~~~~~-~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~k 316 (365)
++|........ ... ....+ .|...... .-..-.+++. |++..+..-++.+|. +||.+.. +...-..
T Consensus 140 ~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~-~~~~~~~-~~~~~~~--- 213 (549)
T KOG4660|consen 140 KRIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISS-VDGSSPG-RETPLLN--- 213 (549)
T ss_pred hhhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchh-ccCcccc-ccccchh---
Confidence 98882221100 000 00000 00000000 1112244444 888888755666665 4787765 3322211
Q ss_pred eEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCCC
Q 017846 317 RIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 317 g~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~~~ 354 (365)
..-|++|.+..++..++.-.|..+.+.... ..++.+.
T Consensus 214 hq~~~~~~~~~s~a~~~~~~G~~~s~~~~v-~t~S~~~ 250 (549)
T KOG4660|consen 214 HQRFVEFADNRSYAFSEPRGGFLISNSSGV-ITFSGPG 250 (549)
T ss_pred hhhhhhhccccchhhcccCCceecCCCCce-EEecCCC
Confidence 145788888888866666227777777766 6676653
No 131
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.59 E-value=2.6e-07 Score=86.54 Aligned_cols=163 Identities=21% Similarity=0.188 Sum_probs=114.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEe-cC-CCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCCC
Q 017846 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC-GD-PNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~-~d-~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~~ 255 (365)
+..|-.++||+.-++.+|..+|+-.-...-.+.+ .. .+...|.|.|.|.+++.-+-|++-+.+.++++.|.|-.+...
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge 139 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGE 139 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCch
Confidence 3446778999999999999999853221111111 11 123458999999999999999998888999999999876421
Q ss_pred C----CC----CCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhc---CCceEEEEEecc-CCCcceEEEEEe
Q 017846 256 I----AP----VNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESV---CGEVQRLRLLGD-YQHSTRIAFVEF 323 (365)
Q Consensus 256 ~----~~----~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~---~G~I~~v~i~~d-~~~~kg~afV~F 323 (365)
. .+ ..+.+.++. ..-.|.+++||+++++.|+.++|.+. -|..+.|-+++. .|+.+|-|||.|
T Consensus 140 ~f~~iagg~s~e~~~flsk~------~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 140 EFLKIAGGTSNEAAPFLSKE------NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred hheEecCCccccCCCCCCcc------cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 1 11 111122211 22467889999999999999999632 235556655554 588999999999
Q ss_pred CCHHHHHHHHHhCCceeCCeeeE
Q 017846 324 AMAESAIAALNCSGAVLGSLPIR 346 (365)
Q Consensus 324 ~~~~~A~~Al~lng~~l~g~~l~ 346 (365)
...++|..||.-|...++-|.|.
T Consensus 214 a~ee~aq~aL~khrq~iGqRYIE 236 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQNIGQRYIE 236 (508)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999998555555555544
No 132
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.54 E-value=2.1e-07 Score=93.24 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-----~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
..++|||+||++.++++.|...|..||.|.+++|+..+. +.+-||||-|-+..+|++|++ |+|..+.++++++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 567899999999999999999999999999999988652 247899999999999999998 99999999999999
Q ss_pred eCCCCC
Q 017846 251 PSKTAI 256 (365)
Q Consensus 251 ~a~~~~ 256 (365)
|++.-.
T Consensus 253 Wgk~V~ 258 (877)
T KOG0151|consen 253 WGKAVP 258 (877)
T ss_pred cccccc
Confidence 997543
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.52 E-value=2.1e-07 Score=90.95 Aligned_cols=82 Identities=16% Similarity=0.260 Sum_probs=74.2
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
...+++|+|.+|...+--.||+.+|++ ||.|+-.+|+.+. ...++|+||++.+.++|.+||+ |+-++|.|+.|. |
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSK-yGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS-V 479 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSK-YGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS-V 479 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHH-hcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeee-e
Confidence 567889999999999999999999999 6999999998775 2478899999999999999999 999999999999 9
Q ss_pred ecCCCCC
Q 017846 349 SPSKTPV 355 (365)
Q Consensus 349 ~~a~~~~ 355 (365)
..++.-+
T Consensus 480 EkaKNEp 486 (940)
T KOG4661|consen 480 EKAKNEP 486 (940)
T ss_pred eecccCc
Confidence 8887654
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.51 E-value=4.3e-07 Score=82.19 Aligned_cols=77 Identities=25% Similarity=0.355 Sum_probs=69.5
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
...|+|.|||..++++||+++|.. ||.+..+-|-.++ +.+.|.|-|.|...++|..|++ +||..+.|++|+ +....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~-~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk-~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAE-FGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMK-IEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHH-hccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceee-eEEec
Confidence 468999999999999999999999 5999999888887 7899999999999999999999 999999999999 55443
Q ss_pred C
Q 017846 353 T 353 (365)
Q Consensus 353 ~ 353 (365)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.51 E-value=5.2e-07 Score=81.65 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
+....+|+|.|||..++++||+++|..||.+..+-+.+++ +.+.|.|-|.|...++|.+|++ +++..+.|+++.+...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3445679999999999999999999999999999999988 5689999999999999999999 9999999999988876
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
..
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 43
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.50 E-value=1.3e-06 Score=87.51 Aligned_cols=157 Identities=13% Similarity=0.024 Sum_probs=110.0
Q ss_pred hhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
....+-|..|.++..|.+.+|--. .|-++.|..+...+.. - |-++|.|.. .+ +++. |+..
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~-t---------G~~~v~f~~-~~------~~q~--A~~r 371 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQ-T---------GRKTVMFTP-QA------PFQN--AFTR 371 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCc-C---------CceEEEecC-cc------hHHH--HHhc
Confidence 344457999999999999998654 4667777777777764 4 999999999 55 5666 7665
Q ss_pred cCCCCCcccccc----------c---------------------CCcccc--------CCCCCcEEEEcCCCCCCcHHHH
Q 017846 155 NGYSQGKRRMNC----------R---------------------TSNAQQ--------DEVIRRTVYVSDIDQQVTEEQL 195 (365)
Q Consensus 155 ~~~~~gk~~~~~----------~---------------------~~~~~~--------~~~~~~~lfV~nLp~~~te~~L 195 (365)
.+...-.+.+.+ . ..++.. .......|||-.||..+++.++
T Consensus 372 n~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~ 451 (944)
T KOG4307|consen 372 NPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPP 451 (944)
T ss_pred CchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccch
Confidence 444311110000 0 000000 0112235999999999999999
Q ss_pred HHHhhhCCCeeE-EEEecCCC-CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 196 ATLFLTCGQVVD-CRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 196 ~~~F~~~G~i~~-v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
.++|...-.|++ |.|.+-+. .-++.|||.|..++++..|+. .+.+.++.+-|+|..
T Consensus 452 v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 452 VNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred hhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 999998777777 67666553 457899999999999998887 777777778888865
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=1.2e-07 Score=82.73 Aligned_cols=143 Identities=19% Similarity=0.206 Sum_probs=114.3
Q ss_pred cchhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhh
Q 017846 72 DNHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTR 151 (365)
Q Consensus 72 ~~~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a 151 (365)
...+..+|++++-+.+++-|.|+|=+-|+|..|.|+.++.... -||||.|.+.-+ ... |
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~------------kFa~v~f~~E~s-------v~~--a 65 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ------------KFAYVFFPNENS-------VQL--A 65 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC------------ceeeeecccccc-------hhh--h
Confidence 3456778899999999999999999999999999988876552 499999999333 666 7
Q ss_pred hhhcCCC--CCcccccccCCccccCCCCCcEEEEcC----CCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEE
Q 017846 152 RKRNGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSD----IDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVE 224 (365)
Q Consensus 152 ~~~~~~~--~gk~~~~~~~~~~~~~~~~~~~lfV~n----Lp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~ 224 (365)
+..+|+. .++. ...+++.|+ |...++++.+...|+.-|.+..+++.++. ++++-++|++
T Consensus 66 ~~L~ng~~l~~~e--------------~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~ 131 (267)
T KOG4454|consen 66 GQLENGDDLEEDE--------------EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVT 131 (267)
T ss_pred hhhcccchhccch--------------hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchh
Confidence 7777665 3333 456788888 88999999999999999999999999887 4578899999
Q ss_pred eCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 225 FTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 225 F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
+......-.++. ..+....-+++.+
T Consensus 132 ~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 132 YQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hhhhhcCcHHhhhhcccCcCCCCccc
Confidence 998888888887 6665554444433
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.47 E-value=2.8e-07 Score=89.79 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=67.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
.+|||+|||.+++..+|+++|..||.|+...|.... ++..+||||+|.+.+.+..|+..+-..+++++|.|+..+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 349999999999999999999999999998776644 4444999999999999999999778889999999998654
No 139
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.46 E-value=1.8e-08 Score=95.17 Aligned_cols=148 Identities=22% Similarity=0.297 Sum_probs=116.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCce-eCCeeEEEeeCCCCCC
Q 017846 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTM-LGFYPVRVLPSKTAIA 257 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~-i~g~~l~V~~a~~~~~ 257 (365)
.+|++||.+.++..+|+.+|...-.-.+-.++.. -||+||.+.+...|.+|++ ++|+. +.|+++.|.++-
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv---- 74 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV---- 74 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh----
Confidence 5899999999999999999975411111122221 3899999999999999999 88875 789999999863
Q ss_pred CCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEe-ccCCCcceEEEEEeCCHHHHHHHHH-h
Q 017846 258 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL-GDYQHSTRIAFVEFAMAESAIAALN-C 335 (365)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~-~d~~~~kg~afV~F~~~~~A~~Al~-l 335 (365)
+.... .+.+-|+|+|+..-++.|..+... ||.+..|... .+.. .-..-|+|...+.+..||. |
T Consensus 75 -------~kkqr-----srk~Qirnippql~wevld~Ll~q-yg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl 139 (584)
T KOG2193|consen 75 -------PKKQR-----SRKIQIRNIPPQLQWEVLDSLLAQ-YGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKL 139 (584)
T ss_pred -------hHHHH-----hhhhhHhcCCHHHHHHHHHHHHhc-cCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhh
Confidence 22222 256999999999999999999999 7999999763 3332 1133578899999999999 9
Q ss_pred CCceeCCeeeEEeecC
Q 017846 336 SGAVLGSLPIRLVSPS 351 (365)
Q Consensus 336 ng~~l~g~~l~~V~~a 351 (365)
+|..+....++ |.+-
T Consensus 140 ~g~Q~en~~~k-~~Yi 154 (584)
T KOG2193|consen 140 NGPQLENQHLK-VGYI 154 (584)
T ss_pred cchHhhhhhhh-cccC
Confidence 99999999999 8773
No 140
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.45 E-value=6e-08 Score=90.95 Aligned_cols=163 Identities=21% Similarity=0.250 Sum_probs=123.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC-----CceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-----VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~-----~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~ 253 (365)
..|-|.||.+.++.+++..+|...|.|.+++|+..... ....|||.|.+...+..|..|..+.+-++.|.|-+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 47999999999999999999999999999999875432 3679999999999999998888888889888887753
Q ss_pred CCCCCCC----------------------CC--------C----------CCCCchh--hcccccEEEeeCCCCCCCHHH
Q 017846 254 TAIAPVN----------------------PT--------F----------LPRSEDE--REMCSRTIYCTNIDKKVTQGD 291 (365)
Q Consensus 254 ~~~~~~~----------------------~~--------~----------~~~~~~~--~~~~~~~l~V~nLp~~~te~~ 291 (365)
....+.. +. . +|...+. -....++++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 2111100 00 0 0000000 022347899999999999999
Q ss_pred HHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCee
Q 017846 292 IKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLP 344 (365)
Q Consensus 292 L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~ 344 (365)
+.+.|.. ||.|.+..+.-... .-++.++|....+...|+.++|..+.-+.
T Consensus 168 ~~e~f~r-~Gev~ya~~ask~~--s~~c~~sf~~qts~~halr~~gre~k~qh 217 (479)
T KOG4676|consen 168 SGESFER-KGEVSYAHTASKSR--SSSCSHSFRKQTSSKHALRSHGRERKRQH 217 (479)
T ss_pred hhhhhhh-cchhhhhhhhccCC--CcchhhhHhhhhhHHHHHHhcchhhhhhh
Confidence 9999999 69999888754432 22677999999999999998888776333
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.42 E-value=5e-07 Score=81.82 Aligned_cols=83 Identities=28% Similarity=0.350 Sum_probs=75.5
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEe
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~ 250 (365)
......+.+||+|+...++.+++...|+.||.|..+.|+.|+. +++||+||+|.+.+.+..|+.|+|..+.|+.+.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 3455677899999999999999999999999999999999884 46999999999999999999999999999999999
Q ss_pred eCCCC
Q 017846 251 PSKTA 255 (365)
Q Consensus 251 ~a~~~ 255 (365)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98765
No 142
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=1.4e-07 Score=96.44 Aligned_cols=141 Identities=16% Similarity=0.068 Sum_probs=113.7
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
..++-.|+..+.+.+|...|+.+|.|..+++.-...+++- + |+||+.|.. +. ++.+ |+...
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~-r---------G~~Y~~F~~-~~------~~~a--aV~f~ 729 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRF-R---------GKAYVEFLK-PE------HAGA--AVAFR 729 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcccc-c---------cceeeEeec-CC------chhh--hhhhh
Confidence 4566899999999999999999999999988866666665 6 999999999 55 4666 55442
Q ss_pred CCC-CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHH
Q 017846 156 GYS-QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARA 233 (365)
Q Consensus 156 ~~~-~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~ 233 (365)
... .| ...|||.|+|+..|.+.|+.++..+|.+.+.+++..+ ++.+|.|||.|.++.++.+
T Consensus 730 d~~~~g-----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~ 792 (881)
T KOG0128|consen 730 DSCFFG-----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASR 792 (881)
T ss_pred hhhhhh-----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhh
Confidence 221 23 3469999999999999999999999999999988876 5689999999999999999
Q ss_pred HHH-hCCceeCCeeEEEeeC
Q 017846 234 ALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 234 Al~-l~g~~i~g~~l~V~~a 252 (365)
++. .....+.-+.+.|..+
T Consensus 793 ~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 793 KVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred hcccchhhhhhhcCcccccc
Confidence 986 7666666555555554
No 143
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=1.4e-06 Score=89.67 Aligned_cols=155 Identities=10% Similarity=0.095 Sum_probs=116.9
Q ss_pred hhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
+-.+.|.|.=..++.+|+..|..+|.|.+|.|.+-+...-+ -||||.|.+... +.. |...
T Consensus 373 rTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~es-----------a~~f~~~~n~dm-------tp~--ak~e 432 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTES-----------AYAFVSLLNTDM-------TPS--AKFE 432 (975)
T ss_pred hhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCccc-----------chhhhhhhcccc-------Ccc--cchh
Confidence 35567999999999999999999999999988776444434 799999988333 444 4434
Q ss_pred cCCC-CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHH
Q 017846 155 NGYS-QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARA 233 (365)
Q Consensus 155 ~~~~-~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~ 233 (365)
+... -+.-. +++-.........+.+++++|++.+....|...|..||.|..|.+-... -||||.|++...+..
T Consensus 433 ~s~~~I~~g~--~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 433 ESGPLIGNGT--HRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----PYAYIQYESPPAAQA 506 (975)
T ss_pred hcCCccccCc--ccccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----cceeeecccCccchh
Confidence 3333 11111 2222222244566779999999999999999999999999987764332 499999999999999
Q ss_pred HHH-hCCceeCC--eeEEEeeCCCC
Q 017846 234 ALS-LAGTMLGF--YPVRVLPSKTA 255 (365)
Q Consensus 234 Al~-l~g~~i~g--~~l~V~~a~~~ 255 (365)
|+. |-|..++| ++|+|.++...
T Consensus 507 a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred hHHHHhcCcCCCCCcccccccccCC
Confidence 998 99999986 68999998653
No 144
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.32 E-value=1.1e-06 Score=87.92 Aligned_cols=169 Identities=14% Similarity=0.021 Sum_probs=122.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCC-ceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCCCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSV-LRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAI 256 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~-kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~~~ 256 (365)
+.+-+.+.+...++.+++++|... .|.++.|..+. +.+ .|-++|.|....++.+|++-|...+-.|.+.|.++....
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccc
Confidence 345557899999999999998632 23444454444 223 689999999999999999988888888888887753211
Q ss_pred CC------------------CCCCCCCCCch-------hhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEE-EEEec
Q 017846 257 AP------------------VNPTFLPRSED-------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LRLLG 310 (365)
Q Consensus 257 ~~------------------~~~~~~~~~~~-------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~-v~i~~ 310 (365)
.. .++...++... .....+.+|||..||..+++.++-++|... -.|++ |.|-+
T Consensus 391 ~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~-~~Ved~I~lt~ 469 (944)
T KOG4307|consen 391 RNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA-AAVEDFIELTR 469 (944)
T ss_pred cccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh-hhhhheeEecc
Confidence 00 00111111111 113456799999999999999999999986 44554 77766
Q ss_pred cC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 311 DY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 311 d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
.. +..++.|||.|...+++..|+. -+.+.++.+.|+ |..
T Consensus 470 ~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir-v~s 510 (944)
T KOG4307|consen 470 LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR-VDS 510 (944)
T ss_pred CCcccccchhhheeccccccchhhhcccccccCceEEE-eec
Confidence 65 5788899999999999999998 788888989999 543
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.32 E-value=1.4e-06 Score=84.92 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=69.8
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~ 352 (365)
..+|||+|||.+++..+|+++|.. ||.|....|.... ++..+||||+|.+.+++..||+.+-..+++++|. |+..+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~-Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQ-FGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLN-VEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhh-cccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEE-EEecc
Confidence 456999999999999999999999 5999988887644 4444899999999999999999778889999999 99887
Q ss_pred CCCCC
Q 017846 353 TPVRP 357 (365)
Q Consensus 353 ~~~~~ 357 (365)
+..+.
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 75444
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.32 E-value=4.8e-06 Score=64.83 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=64.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhh--CCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeC----CeeEEE
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLT--CGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLG----FYPVRV 249 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~--~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~----g~~l~V 249 (365)
+||.|+|||...|.++|.+++.. .|...-+.++.|..+ +.|||||.|.+++.|.+..+ ++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999998874 366777888888754 69999999999999999998 9999985 467788
Q ss_pred eeCC
Q 017846 250 LPSK 253 (365)
Q Consensus 250 ~~a~ 253 (365)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8875
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.30 E-value=5.2e-06 Score=64.63 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=64.7
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhc-CCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeC----CeeeEE
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESV-CGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLG----SLPIRL 347 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~-~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~----g~~l~~ 347 (365)
.||.|+|+|...|.++|.+++... .|....+.++.|. ....|||||.|.+++.|.+-.+ ++|..+. .+...
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~- 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE- 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE-
Confidence 689999999999999999999863 3677777888775 4689999999999999999999 9998874 44556
Q ss_pred eecCCCC
Q 017846 348 VSPSKTP 354 (365)
Q Consensus 348 V~~a~~~ 354 (365)
|.+|+-.
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 7777643
No 148
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=7.2e-07 Score=87.50 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=67.2
Q ss_pred CCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 017846 266 RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 344 (365)
Q Consensus 266 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~ 344 (365)
..+.+...+.++|+|-|||..+++++|+++|+. ||+|..|+.-+. .+|..||+|-+.-+|+.|++ ||+.++.|++
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir~t~~---~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIRETPN---KRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHh-hcchhhhhcccc---cCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 334444667899999999999999999999998 799999765443 45799999999999999999 9999999999
Q ss_pred eE
Q 017846 345 IR 346 (365)
Q Consensus 345 l~ 346 (365)
|+
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 88
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.26 E-value=3e-06 Score=85.10 Aligned_cols=88 Identities=17% Similarity=0.282 Sum_probs=75.0
Q ss_pred hhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-----CCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 269 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-----QHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (365)
Q Consensus 269 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-----~~~kg~afV~F~~~~~A~~Al~-lng~~l~g 342 (365)
+...+..++|||.||++.++++.|...|+. ||.|.+++|+--. .+.+.+|||-|-+..+|.+|+. |+|..+.+
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGr-fgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGR-FGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcc-cCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 333556789999999999999999999999 5999999987332 2456699999999999999999 99999999
Q ss_pred eeeEEeecCCCCCCCC
Q 017846 343 LPIRLVSPSKTPVRPR 358 (365)
Q Consensus 343 ~~l~~V~~a~~~~~~r 358 (365)
+.++ +.|+++-..+.
T Consensus 247 ~e~K-~gWgk~V~ip~ 261 (877)
T KOG0151|consen 247 YEMK-LGWGKAVPIPN 261 (877)
T ss_pred eeee-eccccccccCC
Confidence 9999 99997655543
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.26 E-value=1.7e-06 Score=78.38 Aligned_cols=81 Identities=31% Similarity=0.463 Sum_probs=74.6
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVS 349 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~ 349 (365)
......+||+|+++.++-+++...|+. ||.|..+.++.|. ++++|||||+|.+.+.+..|+.|||..|.++.+. |.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~-vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIE-VT 175 (231)
T ss_pred ccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccce-ee
Confidence 456689999999999999999999998 9999999999887 5799999999999999999999999999999999 88
Q ss_pred cCCCC
Q 017846 350 PSKTP 354 (365)
Q Consensus 350 ~a~~~ 354 (365)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87765
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.88 E-value=8.4e-05 Score=55.50 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=46.1
Q ss_pred cEEEeeCCCCCCCHHH----HHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 276 RTIYCTNIDKKVTQGD----IKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~----L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
..|+|.|||...+-.. |++++.- || .|..|. .+.|+|.|.+.+.|.+|.. |+|..+.|.+|. |+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdN-CGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~-v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDN-CGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKIS-VS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHT-TT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--E-EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhc-cCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEE-EE
Confidence 4699999999887654 6666666 55 676652 2479999999999999999 999999999999 99
Q ss_pred cCCC
Q 017846 350 PSKT 353 (365)
Q Consensus 350 ~a~~ 353 (365)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9743
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.82 E-value=9e-05 Score=55.37 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=46.7
Q ss_pred cEEEEcCCCCCCcHHH----HHHHhhhCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 179 RTVYVSDIDQQVTEEQ----LATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~----L~~~F~~~G-~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
..|||.|||.+.+... |+.++..+| .|.+|. .+-|+|.|.+++.|.+|.+ |+|..+.|+.|.|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 3599999999988765 566777887 565552 1689999999999999999 9999999999999997
Q ss_pred C
Q 017846 253 K 253 (365)
Q Consensus 253 ~ 253 (365)
.
T Consensus 75 ~ 75 (90)
T PF11608_consen 75 P 75 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.74 E-value=0.00011 Score=58.37 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=41.1
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC-----CceeCCeeeE
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS-----GAVLGSLPIR 346 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-ln-----g~~l~g~~l~ 346 (365)
..|+|.+++..++.++|++.|++ ||.|.+|.+.+... .|||.|.+.++|+.|+. +. +..+.+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~-~g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQ-FGEVAYVDFSRGDT----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-S-S--EEEEE--TT-S----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHh-cCCcceEEecCCCC----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 46899999999999999999999 59999999987543 79999999999999997 43 3345555544
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.61 E-value=0.00022 Score=56.62 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=41.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hC-----CceeCCeeEEEe
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA-----GTMLGFYPVRVL 250 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~-----g~~i~g~~l~V~ 250 (365)
..|+|.+++..++.++|++.|+.||.|..|.+..... -|||.|.+++.|++|++ +. +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 3588999999999999999999999999999887543 79999999999999996 43 234455544443
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.52 E-value=0.00041 Score=54.38 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=54.2
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEE-Eecc-------C-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeee
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLR-LLGD-------Y-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPI 345 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~-i~~d-------~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l 345 (365)
..-|.|-+.|+. ....+.+.|++ ||.|.+.. +.++ + .....|-.|+|.++.+|.+||..||..|.|.-|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 356899999987 56678889998 69998775 1111 0 112349999999999999999999999998766
Q ss_pred EEeecCCCC
Q 017846 346 RLVSPSKTP 354 (365)
Q Consensus 346 ~~V~~a~~~ 354 (365)
..|.+.++.
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 658877543
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.48 E-value=0.00033 Score=48.37 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=42.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHH
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al 235 (365)
+.|-|.|.+++..+.-| .+|..||+|..+.+.... -+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 46788888877775544 588899999999887333 48999999999999985
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.40 E-value=0.00016 Score=67.82 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=70.5
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceE--------EEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ--------RLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLG 341 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~--------~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~ 341 (365)
....+|||.+||..+++.+|.++|.+ +|.|. .|.|.+++ +.+||-|.|.|++...|+.|+. +++..|.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34578999999999999999999998 78775 45666665 5789999999999999999999 9999999
Q ss_pred CeeeEEeecCCCCC
Q 017846 342 SLPIRLVSPSKTPV 355 (365)
Q Consensus 342 g~~l~~V~~a~~~~ 355 (365)
+.+|+ |.+++...
T Consensus 143 gn~ik-vs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIK-VSLAERRT 155 (351)
T ss_pred CCCch-hhhhhhcc
Confidence 99999 98876543
No 158
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.25 E-value=0.0014 Score=51.39 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=51.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEE-EecC-------C-CCCceEEEEEeCCHHHHHHHHHhCCceeCCe-eE
Q 017846 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR-ICGD-------P-NSVLRFAFVEFTDEEGARAALSLAGTMLGFY-PV 247 (365)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~-i~~d-------~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~-~l 247 (365)
..-|.|-+.|+. ....+.+.|++||.|.+.. +.++ + ......-.|+|.++.+|.+||..||..+.|. .+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 445888889888 5567888999999998875 1111 1 0123589999999999999999999999985 55
Q ss_pred EEeeC
Q 017846 248 RVLPS 252 (365)
Q Consensus 248 ~V~~a 252 (365)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 67775
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.24 E-value=0.00097 Score=62.06 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=60.5
Q ss_pred EEEEcCCCCCCcHHH----H--HHHhhhCCCeeEEEEecCC---CCCceEE--EEEeCCHHHHHHHHH-hCCceeCCeeE
Q 017846 180 TVYVSDIDQQVTEEQ----L--ATLFLTCGQVVDCRICGDP---NSVLRFA--FVEFTDEEGARAALS-LAGTMLGFYPV 247 (365)
Q Consensus 180 ~lfV~nLp~~~te~~----L--~~~F~~~G~i~~v~i~~d~---~~~kg~a--FV~F~~~~~A~~Al~-l~g~~i~g~~l 247 (365)
-+||-+||+.+-.++ | .++|.+||.|..|.+-+.- ++..+.+ ||+|.+.++|.+||. .+|..+.||-|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 499999998887665 2 3799999999988776533 1113434 999999999999998 99999999999
Q ss_pred EEeeCCC
Q 017846 248 RVLPSKT 254 (365)
Q Consensus 248 ~V~~a~~ 254 (365)
+..+..+
T Consensus 196 katYGTT 202 (480)
T COG5175 196 KATYGTT 202 (480)
T ss_pred eeecCch
Confidence 9998753
No 160
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.23 E-value=2.1e-05 Score=74.86 Aligned_cols=146 Identities=18% Similarity=0.261 Sum_probs=109.7
Q ss_pred hhhcCCccccccHHHHHHHHhccC-CcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLN-PMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G-~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
+.++|.|+-..+..||..+|..-- +...-+++. + ||+||++.+... |.+ |++.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~-----------gyafvd~pdq~w-------a~k--aie~ 56 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------S-----------GYAFVDCPDQQW-------ANK--AIET 56 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee------c-----------ceeeccCCchhh-------hhh--hHHh
Confidence 456789999999999999997651 111111211 3 999999999433 677 8888
Q ss_pred cCCC---CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEec-CCCCCceEEEEEeCCHHH
Q 017846 155 NGYS---QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEG 230 (365)
Q Consensus 155 ~~~~---~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~-d~~~~kg~aFV~F~~~~~ 230 (365)
++.. +|++ ..+...-......+.+-|.|+|+....+.|..++..||.++.|..+. |..+ -..=|+|...+.
T Consensus 57 ~sgk~elqGkr---~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et--avvnvty~~~~~ 131 (584)
T KOG2193|consen 57 LSGKVELQGKR---QEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET--AVVNVTYSAQQQ 131 (584)
T ss_pred hchhhhhcCce---eeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH--HHHHHHHHHHHH
Confidence 8887 7887 44444444444567799999999999999999999999999986543 4332 233478899999
Q ss_pred HHHHHH-hCCceeCCeeEEEeeC
Q 017846 231 ARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 231 A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
+..||. ++|.-+....+.|.|-
T Consensus 132 ~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 132 HRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHHHHHhhcchHhhhhhhhcccC
Confidence 999998 9999998888888764
No 161
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.23 E-value=0.0003 Score=66.09 Aligned_cols=78 Identities=26% Similarity=0.350 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCee--------EEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--------DCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g 244 (365)
....+|||-+||..+++++|.++|.++|.|. .|.|-+|+.+ .||=|.|+|.+...|+.|+. +++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3556899999999999999999999999884 3556666654 69999999999999999999 99999999
Q ss_pred eeEEEeeCC
Q 017846 245 YPVRVLPSK 253 (365)
Q Consensus 245 ~~l~V~~a~ 253 (365)
..|+|..+.
T Consensus 144 n~ikvs~a~ 152 (351)
T KOG1995|consen 144 NTIKVSLAE 152 (351)
T ss_pred CCchhhhhh
Confidence 999998875
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.16 E-value=0.00091 Score=60.16 Aligned_cols=101 Identities=26% Similarity=0.305 Sum_probs=80.7
Q ss_pred HHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEE
Q 017846 230 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL 308 (365)
Q Consensus 230 ~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i 308 (365)
-|+.|-. |.+....|+.|+|.++. ...|||.||..-++.+.|.+-|+.| |.|....+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~---------------------~a~l~V~nl~~~~sndll~~~f~~f-g~~e~av~ 63 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM---------------------HAELYVVNLMQGASNDLLEQAFRRF-GPIERAVA 63 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec---------------------cceEEEEecchhhhhHHHHHhhhhc-Cccchhee
Confidence 4666665 99999999999999974 1579999999999999999999995 99998877
Q ss_pred eccC-CCcceEEEEEeCCHHHHHHHHH-hC--Cc--eeCCeeeEEeecCCC
Q 017846 309 LGDY-QHSTRIAFVEFAMAESAIAALN-CS--GA--VLGSLPIRLVSPSKT 353 (365)
Q Consensus 309 ~~d~-~~~kg~afV~F~~~~~A~~Al~-ln--g~--~l~g~~l~~V~~a~~ 353 (365)
+.|. ++..+-++|.|...-.|.+|+. ++ |. ...+++.- |.....
T Consensus 64 ~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~-VeP~eq 113 (275)
T KOG0115|consen 64 KVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVG-VEPMEQ 113 (275)
T ss_pred eecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccC-CChhhc
Confidence 7776 7888899999999999999988 52 22 23555555 555443
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.08 E-value=0.0016 Score=44.97 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=41.7
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 333 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al 333 (365)
+.|-|.+.++...+ .+...|.. ||+|..+.+.... .+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~-fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFAS-FGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHh-cCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 56889999877665 55558888 5999999987333 38999999999999985
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.99 E-value=0.0017 Score=60.46 Aligned_cols=75 Identities=13% Similarity=0.370 Sum_probs=60.6
Q ss_pred cEEEeeCCCCCCCHHH----H--HHHhhhcCCceEEEEEeccC---CCcceE--EEEEeCCHHHHHHHHH-hCCceeCCe
Q 017846 276 RTIYCTNIDKKVTQGD----I--KLFFESVCGEVQRLRLLGDY---QHSTRI--AFVEFAMAESAIAALN-CSGAVLGSL 343 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~----L--~~~F~~~~G~I~~v~i~~d~---~~~kg~--afV~F~~~~~A~~Al~-lng~~l~g~ 343 (365)
+-+||-+||+.+-.++ | .++|++ ||.|..|.|-+.. +...+. .||+|.+.++|.+||. .+|..++||
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhh-ccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 5689999999887766 2 478999 6999999886643 222222 3999999999999999 999999999
Q ss_pred eeEEeecCC
Q 017846 344 PIRLVSPSK 352 (365)
Q Consensus 344 ~l~~V~~a~ 352 (365)
-|+ ..+.-
T Consensus 194 ~lk-atYGT 201 (480)
T COG5175 194 VLK-ATYGT 201 (480)
T ss_pred eEe-eecCc
Confidence 999 87764
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0034 Score=62.23 Aligned_cols=77 Identities=22% Similarity=0.240 Sum_probs=61.4
Q ss_pred CCCCcEEEEcCCCCCCc------HHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeC-Ce
Q 017846 175 EVIRRTVYVSDIDQQVT------EEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLG-FY 245 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~t------e~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~-g~ 245 (365)
+.....|+|-|+|.--. ..-|..+|+++|+|+...++.+. +..+||.|++|.+..+|..|++ +||+.+. .+
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34556799999984322 23466789999999999999877 4479999999999999999999 9999986 45
Q ss_pred eEEEee
Q 017846 246 PVRVLP 251 (365)
Q Consensus 246 ~l~V~~ 251 (365)
.+.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666654
No 166
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.79 E-value=0.0053 Score=51.15 Aligned_cols=54 Identities=33% Similarity=0.440 Sum_probs=46.8
Q ss_pred HHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 017846 194 QLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 194 ~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~ 253 (365)
+|.+.|..||++.-+|+..+ .-.|+|.+-+.|.+|+.++|..+.|+.|+|+...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCC
Confidence 67788999999999998875 4699999999999999999999999999999853
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.64 E-value=0.0096 Score=49.62 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=52.1
Q ss_pred ccccEEEeeCCC------CCCCH---HHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCe
Q 017846 273 MCSRTIYCTNID------KKVTQ---GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSL 343 (365)
Q Consensus 273 ~~~~~l~V~nLp------~~~te---~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g~ 343 (365)
++-.||.|.=+. ....+ .+|.+.|.. ||++.-+++..+ .-.|+|.+.++|.+|+.++|..++|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~-~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~ 97 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQ-YGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGR 97 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHC-CS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHh-CCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCE
Confidence 344667666554 12332 367778877 799999988775 46999999999999999999999999
Q ss_pred eeEEeecCC
Q 017846 344 PIRLVSPSK 352 (365)
Q Consensus 344 ~l~~V~~a~ 352 (365)
.|+ |...-
T Consensus 98 ~l~-i~LKt 105 (146)
T PF08952_consen 98 TLK-IRLKT 105 (146)
T ss_dssp EEE-EEE--
T ss_pred EEE-EEeCC
Confidence 999 87643
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0046 Score=61.37 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=58.0
Q ss_pred ccEEEeeCCCCCCC------HHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeC-Ceee
Q 017846 275 SRTIYCTNIDKKVT------QGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPI 345 (365)
Q Consensus 275 ~~~l~V~nLp~~~t------e~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~-g~~l 345 (365)
...|+|-|.|.--. ..-|..+|++ +|.|..+.++.+. |..+||.|++|.+..+|..|+. |||+.|. .+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk-~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSK-AGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHh-hccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 46788889885221 2447789999 5999999999876 6799999999999999999999 9999884 4555
Q ss_pred E
Q 017846 346 R 346 (365)
Q Consensus 346 ~ 346 (365)
.
T Consensus 137 ~ 137 (698)
T KOG2314|consen 137 F 137 (698)
T ss_pred E
Confidence 5
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.62 E-value=0.0018 Score=62.16 Aligned_cols=64 Identities=31% Similarity=0.488 Sum_probs=55.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecC---CCC------------CceEEEEEeCCHHHHHHHHHhC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD---PNS------------VLRFAFVEFTDEEGARAALSLA 238 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d---~~~------------~kg~aFV~F~~~~~A~~Al~l~ 238 (365)
+...++|.+-|||.+-.-+.|.++|..+|.|..|+|+.. +.. .+-+|+|+|+..+.|.+|.++.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 357899999999999999999999999999999999876 211 1568999999999999999933
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.59 E-value=0.0059 Score=55.97 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=56.2
Q ss_pred cEEEeeCC--CCCCC---HHHHHHHhhhcCCceEEEEEeccCCC---cceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 017846 276 RTIYCTNI--DKKVT---QGDIKLFFESVCGEVQRLRLLGDYQH---STRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (365)
Q Consensus 276 ~~l~V~nL--p~~~t---e~~L~~~F~~~~G~I~~v~i~~d~~~---~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~ 346 (365)
+.|.++|+ +..++ ++++++-+++ ||.|..|.|.-.++. ..---||+|...++|.+|+- |||+.|+|+.+.
T Consensus 282 kvlllrnmVg~gevd~elede~keEceK-yg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEK-YGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHh-hcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 34555554 22333 4678899999 899999988876632 22246999999999999999 999999999998
Q ss_pred EeecC
Q 017846 347 LVSPS 351 (365)
Q Consensus 347 ~V~~a 351 (365)
..|.
T Consensus 361 -A~Fy 364 (378)
T KOG1996|consen 361 -ACFY 364 (378)
T ss_pred -heec
Confidence 6654
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.44 E-value=0.0016 Score=58.58 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=58.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC----------C----ceEEEEEeCCHHHHHHHHH-hCCce
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----------V----LRFAFVEFTDEEGARAALS-LAGTM 241 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~----------~----kg~aFV~F~~~~~A~~Al~-l~g~~ 241 (365)
....||+++||+.+...-|+++|+.||.|-.|.+-..... + ---|.|+|.+...|.++.. ||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4557999999999999999999999999999988664321 1 1236799999999999887 99999
Q ss_pred eCCee
Q 017846 242 LGFYP 246 (365)
Q Consensus 242 i~g~~ 246 (365)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 172
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.44 E-value=0.0027 Score=59.39 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=60.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhhCC--CeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 178 RRTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
...+|||||-|.+|++||.+.+...| .+.++++...+ +.+||||+|...+...+++.++ |....|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 34699999999999999999998777 46666766655 4589999999999999999999 88889988754443
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.43 E-value=0.0015 Score=58.81 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=49.6
Q ss_pred HHHHHhh-hCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 194 QLATLFL-TCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 194 ~L~~~F~-~~G~i~~v~i~~d~~~-~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
+|...|+ +||+|+++.+...-.- -+|-+||.|..+++|++|++ ||+..+.|++|.....
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 8999999988766543 38899999999999999999 9999999999999886
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.32 E-value=0.0042 Score=59.70 Aligned_cols=66 Identities=23% Similarity=0.313 Sum_probs=55.6
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc---C----CC--------cceEEEEEeCCHHHHHHHHH-h
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---Y----QH--------STRIAFVEFAMAESAIAALN-C 335 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d---~----~~--------~kg~afV~F~~~~~A~~Al~-l 335 (365)
....++|.+.|||.+-.-+-|.++|+. +|.|..|+|..- + +. .+-+|+|+|+..+.|.+|.+ |
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 457899999999999999999999999 599999999764 1 11 24589999999999999999 6
Q ss_pred CCc
Q 017846 336 SGA 338 (365)
Q Consensus 336 ng~ 338 (365)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 543
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.86 E-value=0.0037 Score=56.35 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=50.1
Q ss_pred HHHHHHhh-hcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 290 GDIKLFFE-SVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 290 ~~L~~~F~-~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
+||...|+ + ||+|+.+.|-.+- ..-.|-+||.|...++|.+|++ ||+..+.|++|. ..+..
T Consensus 83 Ed~f~E~~~k-ygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~-ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDK-YGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIH-AELSP 146 (260)
T ss_pred HHHHHHHHHH-hhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcce-eeecC
Confidence 45555566 5 7999999876654 3567889999999999999999 999999999999 77653
No 176
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.79 E-value=0.017 Score=55.04 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=65.9
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-----CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-----QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-----~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
..|.|.||.+.++.++++.+|.- .|.|..+.|++.. ......|||.|.+...+..|-.|-.+.|-++.|.|+-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~-lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGN-LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhh-ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 48999999999999999999997 5999999998854 23556999999999999988888888888888885555
Q ss_pred CCCCC
Q 017846 351 SKTPV 355 (365)
Q Consensus 351 a~~~~ 355 (365)
...++
T Consensus 87 ~~~~~ 91 (479)
T KOG4676|consen 87 GDEVI 91 (479)
T ss_pred CCCCC
Confidence 55443
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.69 E-value=0.0062 Score=54.88 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=58.7
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC----------Ccc----eEEEEEeCCHHHHHHHHH-hCCc
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ----------HST----RIAFVEFAMAESAIAALN-CSGA 338 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~----------~~k----g~afV~F~~~~~A~~Al~-lng~ 338 (365)
....||+.++|+...-..|+++|+. ||.|-.|.+.+... ..+ .-|.|+|.+...|..+.. ||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~-yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQ-YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHh-ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999 79999999976431 111 135789999999999998 9999
Q ss_pred eeCCee
Q 017846 339 VLGSLP 344 (365)
Q Consensus 339 ~l~g~~ 344 (365)
.|+|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999975
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.51 E-value=0.045 Score=50.37 Aligned_cols=60 Identities=25% Similarity=0.187 Sum_probs=50.0
Q ss_pred HHHHHHhhhCCCeeEEEEecCCCCC---ceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 193 EQLATLFLTCGQVVDCRICGDPNSV---LRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 193 ~~L~~~F~~~G~i~~v~i~~d~~~~---kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
+++++-.++||.|..|.|..+++.. .---||+|+..++|.+|+- |||..++||.++..+.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 5677888999999999888877532 2346999999999999997 9999999998876653
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.50 E-value=0.014 Score=54.81 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=62.1
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G--~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
..++||+||-..+|++||.+..... | .+..++++-+. |++||||+|...+..+.++.++ |-.+.|.|..-.+++
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~-G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQST-GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhh-hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 4689999999999999999998874 6 56677776554 7899999999999999999999 999999998766344
Q ss_pred c
Q 017846 350 P 350 (365)
Q Consensus 350 ~ 350 (365)
+
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 3
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.47 E-value=0.013 Score=58.70 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=62.0
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCcee---CCeeeEE
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL---GSLPIRL 347 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l---~g~~l~~ 347 (365)
...++.|||.||=..+|.-+|+.++.+-+|.|....| |+ -+..|||.|.+.++|..... |||..+ +.+.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk--IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~- 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK--IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI- 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH--hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE-
Confidence 4567899999999999999999999976777777633 32 33479999999999999999 999876 667787
Q ss_pred eecCC
Q 017846 348 VSPSK 352 (365)
Q Consensus 348 V~~a~ 352 (365)
+.|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 77653
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.40 E-value=0.098 Score=37.13 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=44.7
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcC--CceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVC--GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~--G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~ 334 (365)
..|+|++++. ++.+||+.+|..+| ....+|.++-|. -|-|.|.+.+.|.+||.
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 5799999975 88899999999842 256788888875 58999999999999997
No 182
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.11 E-value=0.028 Score=42.88 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=48.6
Q ss_pred EEEEeCCHHHHHHHHHh--CCceeCCeeEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhh
Q 017846 221 AFVEFTDEEGARAALSL--AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297 (365)
Q Consensus 221 aFV~F~~~~~A~~Al~l--~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 297 (365)
|.|+|.++.-|++.+++ +...+.+..+.|.-..-.. ....+-+-....+.++|.|.|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~-----~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTL-----GHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEec-----CCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999984 4444666666555431100 001111122255678999999999999999998876
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.88 E-value=0.23 Score=39.63 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=50.5
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g 342 (365)
.+.+-..|..++-++|..+.+++-..|..++|++|....+-.+.++|.+.++|..-.. .||+.|+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444455556677777666556888999999876677789999999999999999 99998754
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.81 E-value=0.12 Score=38.75 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=40.3
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG 337 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng 337 (365)
..||--.+|..|...||.++|++ ||.|. |..+-|. -|||...+.+.|..|+. ++-
T Consensus 9 dHVFhltFPkeWK~~DI~qlFsp-fG~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSP-FGQIY-VSWINDT-----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCC-CCCEE-EEEECTT-----EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEeCchHhhhhhHHHHhcc-CCcEE-EEEEcCC-----cEEEEeecHHHHHHHHHHhcc
Confidence 44555459999999999999999 59875 5555553 69999999999999998 653
No 185
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.77 E-value=0.17 Score=38.07 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=41.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 238 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~ 238 (365)
.....||+ .|..+...||.++|+.||.| .|.++-|. -|||.....+.|..|+. +.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence 34456666 99999999999999999996 45566553 69999999999999987 54
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.51 E-value=0.041 Score=55.15 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=59.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhh-hCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeC---CeeEEEee
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG---FYPVRVLP 251 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~---g~~l~V~~ 251 (365)
.+..|||.||-.-+|.-+|+.++. ..|.|++..| |+- |..|||.|.+.++|..... |||..+. ++.|.+.|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI--KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI--KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh--hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 455699999999999999999999 5667777633 332 3589999999999999998 9999874 67888888
Q ss_pred CC
Q 017846 252 SK 253 (365)
Q Consensus 252 a~ 253 (365)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 54
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.34 E-value=0.3 Score=34.68 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=43.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhC---CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTC---GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 236 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~---G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~ 236 (365)
....|+|.|+ .+++.++|+.+|..| .....|.++-|. -|=|.|.+++.|.+||.
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 3457999999 458889999999988 134678888775 48899999999999986
No 188
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.23 E-value=0.067 Score=48.39 Aligned_cols=94 Identities=24% Similarity=0.282 Sum_probs=68.7
Q ss_pred hhhhcCCC--CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCC
Q 017846 151 RRKRNGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTD 227 (365)
Q Consensus 151 a~~~~~~~--~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~ 227 (365)
|...+... .|+. .++..+. ...|||.||+.-++.+.|.+.|+.||.|....++-|. ++..+-++|.|..
T Consensus 10 ak~eLd~~~~~~~~---lr~rfa~-----~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 10 AKRELDGRFPKGRS---LRVRFAM-----HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAK 81 (275)
T ss_pred HHHhcCCCCCCCCc---eEEEeec-----cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhc
Confidence 44555444 4555 4444332 2579999999999999999999999999887666654 5667889999999
Q ss_pred HHHHHHHHH-hC--Cc--eeCCeeEEEeeC
Q 017846 228 EEGARAALS-LA--GT--MLGFYPVRVLPS 252 (365)
Q Consensus 228 ~~~A~~Al~-l~--g~--~i~g~~l~V~~a 252 (365)
.-.|.+|+. +. +. ...+++.-|.+.
T Consensus 82 k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 82 KPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred chhHHHHHHHhccCccccCCCCCccCCChh
Confidence 999999987 42 22 234667777664
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.65 E-value=0.11 Score=45.14 Aligned_cols=66 Identities=9% Similarity=0.073 Sum_probs=44.5
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCce---EEEEEecc-C---CCcceEEEEEeCCHHHHHHHHH-hCCcee
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEV---QRLRLLGD-Y---QHSTRIAFVEFAMAESAIAALN-CSGAVL 340 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I---~~v~i~~d-~---~~~kg~afV~F~~~~~A~~Al~-lng~~l 340 (365)
...|.|++||+.+|++++++.+++.++.- .++.-... . ...-.-|||.|.+.+++..-.. ++|+.|
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 46899999999999999999887744655 33331111 1 1123369999999999988888 999887
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.39 E-value=0.11 Score=45.34 Aligned_cols=77 Identities=14% Similarity=0.098 Sum_probs=49.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhh-CCCe---eEEEEecCCC--C--CceEEEEEeCCHHHHHHHHH-hCCceeCC---
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLT-CGQV---VDCRICGDPN--S--VLRFAFVEFTDEEGARAALS-LAGTMLGF--- 244 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~i---~~v~i~~d~~--~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g--- 244 (365)
...+|.|++||+.+|++++.+.+.. ++.- ..+.-..... . .-.-|||.|.+.+++..... ++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4558999999999999999998876 6665 3333222221 1 24679999999999999888 99988742
Q ss_pred --eeEEEeeCC
Q 017846 245 --YPVRVLPSK 253 (365)
Q Consensus 245 --~~l~V~~a~ 253 (365)
.+..|++|.
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 355677764
No 191
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.37 E-value=0.3 Score=45.34 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=54.3
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
.=|.|.++|+.- -..|..+|++ ||.|.+......- .|-+|.|.++-+|.+||.-||+.|+|..+.=|+.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~-cG~Vvkhv~~~ng----NwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSR-CGEVVKHVTPSNG----NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHh-hCeeeeeecCCCC----ceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 457788888754 4578889998 7999877665332 3999999999999999999999998876543655
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.35 E-value=0.49 Score=46.26 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=60.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhC-CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g 244 (365)
....|+|=.+|..++-.||..|...+ -.|.+++|++|...++=...|.|.+.++|....+ +||..+..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37789999999999999999998865 4789999999876667789999999999999998 99999864
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.00 E-value=1.1 Score=35.76 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=48.6
Q ss_pred EEEcCCCCCCcHHHHHHHhhhCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 181 VYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (365)
Q Consensus 181 lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g 244 (365)
+.+...|..++-++|..+.+.+- .|..++|++|...++=.+.+.|.+.+.|..... +||+.+..
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444445555566766666554 677899999876678889999999999999998 99998764
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.97 E-value=0.056 Score=52.88 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=57.7
Q ss_pred EEEcCCCCCC-cHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 017846 181 VYVSDIDQQV-TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 181 lfV~nLp~~~-te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
|-+.-.|+.+ +-.+|...|.+||+|..|.+-... -.|.|+|.+..+|-+|...++..|+++.|+|.|-..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 4444455554 458999999999999999987653 268999999999999999999999999999999754
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.96 E-value=0.49 Score=39.24 Aligned_cols=74 Identities=23% Similarity=0.191 Sum_probs=53.8
Q ss_pred cccccEEEeeCCCCCCC-HHHHH---HHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 017846 272 EMCSRTIYCTNIDKKVT-QGDIK---LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~t-e~~L~---~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~ 346 (365)
+++..||.|+=|..++. .+||+ ..++. ||.|.+|.+... .-|.|.|.+..+|.+|+. +.. ...|..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 45667888866655432 34444 45556 599999988643 369999999999999999 665 56788888
Q ss_pred EeecCCC
Q 017846 347 LVSPSKT 353 (365)
Q Consensus 347 ~V~~a~~ 353 (365)
.+|...
T Consensus 156 -CsWqqr 161 (166)
T PF15023_consen 156 -CSWQQR 161 (166)
T ss_pred -eecccc
Confidence 888654
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.88 E-value=0.32 Score=48.62 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=53.8
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhh-cCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC--ceeCCeeeE
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFES-VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG--AVLGSLPIR 346 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~-~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng--~~l~g~~l~ 346 (365)
.+.|.|+-||..+..++++.+|.- -|..+.+|.+-.+.+ -||+|++..||+.|.. |.. ..|.|++|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 367888999999999999999973 246888998877654 6999999999999987 544 357777654
No 197
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.70 E-value=0.44 Score=41.75 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=45.9
Q ss_pred CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC--CceeCCeeeEEeecCCCCC
Q 017846 288 TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRLVSPSKTPV 355 (365)
Q Consensus 288 te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-ln--g~~l~g~~l~~V~~a~~~~ 355 (365)
..+.|+++|.. |+.+....+++.-+ -..|.|.+.++|.+|.. |+ +..+.|..++ +.++.+..
T Consensus 8 ~~~~l~~l~~~-~~~~~~~~~L~sFr----Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~-~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFST-YDPPVQFSPLKSFR----RIRVVFESPESAQRARQLLHWDGTSFNGKRLR-VYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHT-T-SS-EEEEETTTT----EEEEE-SSTTHHHHHHHTST--TSEETTEE-E-EE----SS
T ss_pred hHHHHHHHHHh-cCCceEEEEcCCCC----EEEEEeCCHHHHHHHHHHhcccccccCCCceE-EEEccccc
Confidence 45789999998 69998888877543 68999999999999999 99 9999999999 99886543
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.50 E-value=0.053 Score=50.95 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCCcHHHHH---HHhhhCCCeeEEEEecCCC--CC---ceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 179 RTVYVSDIDQQVTEEQLA---TLFLTCGQVVDCRICGDPN--SV---LRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~i~~d~~--~~---kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
.-+||-+|+..+..+.+. ++|.+||.|..|.+-.+.. .+ ---+||+|+..++|..||. .+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 348999999887665543 5899999999999988762 11 2237999999999999998 9999999998877
Q ss_pred eeCCC
Q 017846 250 LPSKT 254 (365)
Q Consensus 250 ~~a~~ 254 (365)
.+..+
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 77643
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.33 E-value=0.098 Score=54.62 Aligned_cols=76 Identities=30% Similarity=0.337 Sum_probs=63.5
Q ss_pred EeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCcee--CCeeeEEeecCCCCC
Q 017846 279 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL--GSLPIRLVSPSKTPV 355 (365)
Q Consensus 279 ~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l--~g~~l~~V~~a~~~~ 355 (365)
++.|.+-..+-.-|.-+|++ ||.|.+++.+++-+ .|.|+|.+.+.|..|++ |+|+++ .|-+.+ |.++++..
T Consensus 302 ~~~nn~v~~tSssL~~l~s~-yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~-V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSD-YGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSR-VSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHh-hcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCcee-EEeccccc
Confidence 34445556777889999999 79999999999876 89999999999999999 999875 788999 99998876
Q ss_pred CCCCC
Q 017846 356 RPRAP 360 (365)
Q Consensus 356 ~~r~~ 360 (365)
.--++
T Consensus 376 ~~ep~ 380 (1007)
T KOG4574|consen 376 MYEPP 380 (1007)
T ss_pred cccCC
Confidence 54433
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.69 E-value=0.37 Score=44.72 Aligned_cols=67 Identities=24% Similarity=0.314 Sum_probs=52.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCe-eEEEee
Q 017846 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY-PVRVLP 251 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~-~l~V~~ 251 (365)
=|-|-+.|+.-. .-|..+|++||.|++....... .+-+|.|.+.-+|.+||..||..|.|. .|-|++
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng----NwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG----NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC----ceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 356667776544 3567789999999988776332 489999999999999999999999875 455665
No 201
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.61 E-value=0.52 Score=46.11 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=60.1
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g 342 (365)
...|+|-.+|-.++-.||..++..|.-.|..++|++|.--.+-.++|+|.+.++|..-.+ +||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 688999999999999999999998767899999999764445578999999999999999 99998855
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.46 E-value=0.36 Score=48.28 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=55.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhh--hCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hC--CceeCCeeEEEe
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFL--TCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVL 250 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~--~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~--g~~i~g~~l~V~ 250 (365)
..+.|.++.||..+-.|+++.+|+ .+-.+.+|.+-...+ =||+|++..+|+.|.+ |. -++|.|++|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 345688899999999999999997 588999999877653 4899999999999986 42 234677776433
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.07 E-value=6.9 Score=36.49 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=105.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC---------CCceEEEEEeCCHHHHHHHH----H-hCC-
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN---------SVLRFAFVEFTDEEGARAAL----S-LAG- 239 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~---------~~kg~aFV~F~~~~~A~~Al----~-l~g- 239 (365)
.-..|.|.+.|+..+++-..+...|.+||.|++|.++.+.. +...-..+.|-+.+.+.... + |..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 44567799999999999999999999999999999998761 12467889999988877543 2 222
Q ss_pred -ceeCCeeEEEeeCCCCCCCCC------CCC----CCCC--chhhcccccEEEeeCCCCCCCHHHHHHHhh---hcCC--
Q 017846 240 -TMLGFYPVRVLPSKTAIAPVN------PTF----LPRS--EDEREMCSRTIYCTNIDKKVTQGDIKLFFE---SVCG-- 301 (365)
Q Consensus 240 -~~i~g~~l~V~~a~~~~~~~~------~~~----~~~~--~~~~~~~~~~l~V~nLp~~~te~~L~~~F~---~~~G-- 301 (365)
..+....|.+.+..-...... +.+ .+.. .-......|.|.|.--.+-.+++-+.+.+. . -+
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~-~~n~ 170 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKN-SNNK 170 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhcc-CCCc
Confidence 234555666655421100000 000 0000 001134567777764333223333333332 1 13
Q ss_pred --ceEEEEEeccC----CCcceEEEEEeCCHHHHHHHHH-hC--CceeCCeeeEEeecCC
Q 017846 302 --EVQRLRLLGDY----QHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRLVSPSK 352 (365)
Q Consensus 302 --~I~~v~i~~d~----~~~kg~afV~F~~~~~A~~Al~-ln--g~~l~g~~l~~V~~a~ 352 (365)
.+++|.++... .-++.||.++|-+...|...+. +. +...+=.+..-|+...
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 36677777543 3467799999999999999997 54 4444332222255433
No 204
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.79 E-value=1.4 Score=31.80 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 188 QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 188 ~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
..++-++++..+..|+- .+|..|+. || ||.|.+..+|+++.. .+|..+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~t---Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRT---GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCC---EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35677899999999964 34555543 65 999999999999998 9998888777654
No 205
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.56 E-value=0.9 Score=37.74 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=55.6
Q ss_pred CCCCcEEEEcCCCCCCcH----HHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 175 EVIRRTVYVSDIDQQVTE----EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te----~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
+..-.+|.|+=|...+.. ..+...++.||+|.+|.++.. --|.|.|.+..+|-+|+. +.. ...|..+.+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 334567888766655543 345556779999999998754 369999999999999998 554 677889999
Q ss_pred eeCC
Q 017846 250 LPSK 253 (365)
Q Consensus 250 ~~a~ 253 (365)
.|..
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 9864
No 206
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.33 E-value=1.1 Score=39.37 Aligned_cols=59 Identities=27% Similarity=0.193 Sum_probs=45.1
Q ss_pred cHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hC--CceeCCeeEEEeeCC
Q 017846 191 TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLPSK 253 (365)
Q Consensus 191 te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~--g~~i~g~~l~V~~a~ 253 (365)
..+.|+++|..|+.+.....++.- +-..|.|.+.+.|.+|.. ++ +..+.|..|+|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 347899999999999988887654 357899999999999998 88 899999999999874
No 207
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.96 E-value=0.34 Score=49.51 Aligned_cols=145 Identities=18% Similarity=0.165 Sum_probs=95.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
....++||+|+...+..+-++.+...+|-|-++.... |||..|..+....+|+. ++...+.|..+.+.....
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 3556899999999999999999999999998876654 99999999999999998 888888888877766321
Q ss_pred CC-CC---------CCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEe
Q 017846 255 AI-AP---------VNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEF 323 (365)
Q Consensus 255 ~~-~~---------~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F 323 (365)
.. .+ ....+.|.. ..+-.+|.++|..+.+......+.= -+...+..-..+. ...+-++|-+|
T Consensus 111 ~~~n~~k~~~~~~~~~~~f~p~~------srr~e~i~~k~~~l~~~~~~~~~~i-s~s~~s~~~~~e~d~h~~e~~~~~~ 183 (668)
T KOG2253|consen 111 TIENADKEKSIANKESHKFVPSS------SRRQESIQNKPLSLDEQIHKKSLQI-SSSAASRRQIAEADDHCLELEKTET 183 (668)
T ss_pred hhcCccccccchhhhhcccCCch------hHHHHHhhccccchhHHHHHHHHhc-cchhhhhhhhHHHHHHHHHHHHhhc
Confidence 11 10 111122221 1467888888888887777776653 1333333222221 22333555566
Q ss_pred CCHHHHHHHHH
Q 017846 324 AMAESAIAALN 334 (365)
Q Consensus 324 ~~~~~A~~Al~ 334 (365)
.+...+..++.
T Consensus 184 ~s~~~~~~~~~ 194 (668)
T KOG2253|consen 184 ESNSALSKEAE 194 (668)
T ss_pred ccccccCcccc
Confidence 55555544444
No 208
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.13 E-value=0.18 Score=47.47 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=59.0
Q ss_pred cEEEeeCCCCCCCHHHHH---HHhhhcCCceEEEEEeccC--C---CcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 017846 276 RTIYCTNIDKKVTQGDIK---LFFESVCGEVQRLRLLGDY--Q---HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~---~~F~~~~G~I~~v~i~~d~--~---~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~ 346 (365)
+-+||-+|+..+-.+.+. +.|.+ ||.|.+|.+.++. . ....-++|+|...++|..||. .+|..+.|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQ-YGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccc-cccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 557888888766554443 57887 6999999988765 1 122358999999999999999 999999999988
Q ss_pred EeecCCCC
Q 017846 347 LVSPSKTP 354 (365)
Q Consensus 347 ~V~~a~~~ 354 (365)
..++-++
T Consensus 157 -a~~gttk 163 (327)
T KOG2068|consen 157 -ASLGTTK 163 (327)
T ss_pred -HhhCCCc
Confidence 7766543
No 209
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.60 E-value=0.36 Score=47.40 Aligned_cols=70 Identities=21% Similarity=0.183 Sum_probs=56.2
Q ss_pred eeCCCCCC-CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCCCC
Q 017846 280 CTNIDKKV-TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKTPV 355 (365)
Q Consensus 280 V~nLp~~~-te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~~~~ 355 (365)
+.-.|+.. +-.+|...|-+ ||.|..|.+-... -.|.|+|.+..+|-.|-..++..|+++.|+ |-|-++..
T Consensus 377 lek~~~glnt~a~ln~hfA~-fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~s~~avlnnr~iK-l~whnps~ 447 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQ-FGEIENIQVDYSS----LHAVVTFKTRAEAGEAYASHGAVLNNRFIK-LFWHNPSP 447 (526)
T ss_pred hhccCCCCchHhhhhhhhhh-cCccccccccCch----hhheeeeeccccccchhccccceecCceeE-EEEecCCc
Confidence 33344443 45789999999 5999999885432 269999999999988888899999999999 99988743
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.86 E-value=0.54 Score=49.38 Aligned_cols=72 Identities=32% Similarity=0.318 Sum_probs=62.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeC--CeeEEEeeCCCC
Q 017846 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG--FYPVRVLPSKTA 255 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~--g~~l~V~~a~~~ 255 (365)
+.++-|.+-..+...|..+|..||.|.+++.+++-+ .|.|.|.+.+.|..|+. ++|.++. |-+.+|.+++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 355666677788889999999999999999999875 89999999999999998 9999864 788999998753
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.25 E-value=3.2 Score=30.39 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHhhhcCC----ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 285 KKVTQGDIKLFFESVCG----EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 285 ~~~te~~L~~~F~~~~G----~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
..++..+|..++....| .|-.|.|..+ |+||+-.. +.|..++. |++..+.|++|+ |+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~-ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPE-EVAEKVLEALNGKKIKGKKVR-VERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-T-T-HHHHHHHHTT--SSS-----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECH-HHHHHHHHHhcCCCCCCeeEE-EEEC
Confidence 35778888888887422 4557777654 89999877 57888888 999999999999 8754
No 212
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=84.90 E-value=1.5 Score=36.61 Aligned_cols=118 Identities=13% Similarity=-0.003 Sum_probs=74.5
Q ss_pred CCcHHHHHHHhhh----CCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCCCCCCCCCCCC
Q 017846 189 QVTEEQLATLFLT----CGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL 264 (365)
Q Consensus 189 ~~te~~L~~~F~~----~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~~~~~~~~~~~ 264 (365)
..+-..|...+.+ .|.+.-..+ . .++..+.|.+++++.+++......+.|..+.++.-.+...+.
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-~-----~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~----- 96 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-G-----DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPS----- 96 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-C-----CCeEEEEEEeccceeEEEecccccccccchhhhhhccccccc-----
Confidence 4556666665543 343332222 2 269999999999999999877777888777777653211111
Q ss_pred CCCchhhcccccEEEeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEE
Q 017846 265 PRSEDEREMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFV 321 (365)
Q Consensus 265 ~~~~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV 321 (365)
... .....-=|.|.|||.. ++++-|+.+-+. .|.+..+...........|+-|
T Consensus 97 --~~~-~~~~~vWVri~glP~~~~~~~~~~~i~~~-iG~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 97 --EVK-FEHIPVWVRIYGLPLHLWSEEILKAIGSK-IGEPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred --ccc-eeccchhhhhccCCHHHhhhHHHHHHHHh-cCCeEEEEcCCCCcccccEEEE
Confidence 000 0112234778899987 788889999998 5999988876543323335544
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.24 E-value=4.5 Score=29.63 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHhhhCCC-----eeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 188 QQVTEEQLATLFLTCGQ-----VVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 188 ~~~te~~L~~~F~~~G~-----i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
..++..+|..++..-+. |-.|+|... |+||+-... .|..++. |++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788889998886654 456777653 899998864 7888887 9999999999999864
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=83.24 E-value=1 Score=46.14 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=60.0
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
+.-++||+|+...+..+-++.+... ||.|.+++... |||..|..+.-+..|+. ++-..++|..+. +..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~-~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLI-ENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhh-ccc
Confidence 4578999999999999999999987 89998887655 89999999999999999 999999998887 655
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.68 E-value=7.2 Score=28.05 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=41.1
Q ss_pred CCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 017846 286 KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (365)
Q Consensus 286 ~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~ 346 (365)
.++-++++..+..+ + -. +|..++ .|| ||.|.+..+|.+|.. .+|..+.+.+|.
T Consensus 11 ~~~v~d~K~~Lr~y-~-~~--~I~~d~---tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY-R-WD--RIRDDR---TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcC-C-cc--eEEecC---CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 46778999999984 4 33 333343 233 899999999999999 999999888876
No 216
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.58 E-value=10 Score=36.88 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=50.2
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLG 341 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~ 341 (365)
-...|-|.++|...-.+||...|+.|-+.--.|+++-|. .||-.|.+...|..||.|..-.+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh~~lK 452 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLKHDWLK 452 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhccCceEE
Confidence 346889999999999999999999953455677777664 699999999999999986333333
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.78 E-value=19 Score=36.73 Aligned_cols=75 Identities=21% Similarity=0.292 Sum_probs=58.7
Q ss_pred cccccEEEeeCCCCC-CCHHHHHHHhhhcC---CceEEEEEeccC-CC----------c---------------------
Q 017846 272 EMCSRTIYCTNIDKK-VTQGDIKLFFESVC---GEVQRLRLLGDY-QH----------S--------------------- 315 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~~---G~I~~v~i~~d~-~~----------~--------------------- 315 (365)
...+++|-|.||+.. +.-.||.-+|..|. |.|.+|.|++.. |+ +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 446789999999874 78899999988652 589999998743 11 1
Q ss_pred -----------------ceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 017846 316 -----------------TRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (365)
Q Consensus 316 -----------------kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~ 346 (365)
--||.|+|.+.+.|.+... ++|.+|......
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~ 299 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANK 299 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccce
Confidence 1289999999999999999 999999665444
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.53 E-value=15 Score=35.79 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=47.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCC-eeEEEEecCCCCCceEEEEEeCCHHHHHHHHHh
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRICGDPNSVLRFAFVEFTDEEGARAALSL 237 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l 237 (365)
-...|=|.++|.....+||...|+.|+. --.|+++-|. .+|..|.+...|..||.+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 4456899999999999999999999974 3556776664 799999999999999986
No 219
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=66.05 E-value=6 Score=31.90 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=32.2
Q ss_pred EEEEcCCCCC---------CcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCH-HHHHHHHHh
Q 017846 180 TVYVSDIDQQ---------VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDE-EGARAALSL 237 (365)
Q Consensus 180 ~lfV~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~-~~A~~Al~l 237 (365)
++.|-|++.+ ++.+.|++.|..|..+. ++.+..+..+.|++.|.|... .--..|+.|
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHHH
Confidence 4566676543 34578999999999874 666676666789999999763 334445553
No 220
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=60.77 E-value=31 Score=26.10 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=43.0
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~ 334 (365)
.-|.--.+...+..+|++.++.+|| .|.+|..+.-+..- --|||++....+|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~-KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE-KKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-EEEEEEeCCCCcHHHHHH
Confidence 3555556788999999999999888 78888876654322 259999998888876654
No 221
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=57.90 E-value=39 Score=25.06 Aligned_cols=57 Identities=25% Similarity=0.283 Sum_probs=42.3
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~ 334 (365)
.-|+-..+...+..+|++.++.+|| .|.+|..+.-+..- --|||++...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~-KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE-KKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-eEEEEEECCCCcHHHHHH
Confidence 4566667889999999999999888 78888766544322 259999988777766543
No 222
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.91 E-value=1.8 Score=42.33 Aligned_cols=84 Identities=7% Similarity=-0.104 Sum_probs=65.1
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC--CcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~--~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
...++..+|-..++++|.-+|+. ||.|..+.+.+..+ -.+-.+||+-.+ .+|..+++ +.-..+.|..++ |..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d-~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r-~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHED-PSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDR-KAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccC-CcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhh-hhcCc
Confidence 44677888999999999999999 79999888876553 344477877665 66788888 777778888999 88887
Q ss_pred CCCCCCCCCC
Q 017846 353 TPVRPRAPRP 362 (365)
Q Consensus 353 ~~~~~r~~~~ 362 (365)
...-+|..+|
T Consensus 81 ~s~~~r~k~~ 90 (572)
T KOG4365|consen 81 SSSEKRSKNP 90 (572)
T ss_pred hhhhhhhcCc
Confidence 7766666554
No 223
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=54.75 E-value=3.7 Score=31.37 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhh
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFL 200 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~ 200 (365)
....++|-|.|||..+++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34678899999999999999998654
No 224
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=52.57 E-value=18 Score=33.66 Aligned_cols=46 Identities=7% Similarity=0.174 Sum_probs=35.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhCCCe-eEEEEecCCCCCceEEEEEeCCHH
Q 017846 180 TVYVSDIDQQVTEEQLATLFLTCGQV-VDCRICGDPNSVLRFAFVEFTDEE 229 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~d~~~~kg~aFV~F~~~~ 229 (365)
.||++|||.++.-.||+..+.+.|.+ .++.+. .+.|-||.+|.+..
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEeee----cCCcceeEecCCcc
Confidence 49999999999999999999987754 344442 24578999998753
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=48.75 E-value=20 Score=28.88 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=27.3
Q ss_pred EEEeeCCCCC---------CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCH
Q 017846 277 TIYCTNIDKK---------VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMA 326 (365)
Q Consensus 277 ~l~V~nLp~~---------~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~ 326 (365)
++.|.|++-. .+.++|++.|..| ..+ .++.+.++...+|+++|.|...
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f-~p~-kv~~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEF-NPL-KVKPLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH----S-EEEEEEETTEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhc-CCc-eeEECcCCCCCcEEEEEEECCC
Confidence 4556666432 3557899999995 665 4666666656889999999873
No 226
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=45.26 E-value=16 Score=22.85 Aligned_cols=16 Identities=13% Similarity=0.432 Sum_probs=10.3
Q ss_pred cccHHHHHHHHhccCC
Q 017846 85 DCEMRDLVDMLSKLNP 100 (365)
Q Consensus 85 ~~~~~~L~~~Fs~~G~ 100 (365)
++++.+|++.|.+++.
T Consensus 20 Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIKK 35 (36)
T ss_dssp ---HHHHHHHHHCS--
T ss_pred cCCHHHHHHHHHHhcc
Confidence 6789999999998764
No 227
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=40.63 E-value=62 Score=26.67 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=50.9
Q ss_pred CeEEeeecccCCCCcccccccchhhhhhcCCC-CCcccccccCCccccCCC------CCcEEEEcCCCCC-CcHHHHHHH
Q 017846 127 GFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS-QGKRRMNCRTSNAQQDEV------IRRTVYVSDIDQQ-VTEEQLATL 198 (365)
Q Consensus 127 GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~-~gk~~~~~~~~~~~~~~~------~~~~lfV~nLp~~-~te~~L~~~ 198 (365)
|+..+.|.+ .. |+.+ ++...... .+.. +.++.-.+..... ...=|-|.|||.. .+++-|+.+
T Consensus 56 ~~fl~~F~~-~~------d~~~--vl~~~p~~~~~~~-~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i 125 (153)
T PF14111_consen 56 NLFLFQFES-EE------DRQR--VLKGGPWNFNGHF-LILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAI 125 (153)
T ss_pred CeEEEEEEe-cc------ceeE--EEecccccccccc-hhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHH
Confidence 788899988 56 6777 66655444 3332 2222211111111 1112667899987 677889999
Q ss_pred hhhCCCeeEEEEecCCCCCceEE
Q 017846 199 FLTCGQVVDCRICGDPNSVLRFA 221 (365)
Q Consensus 199 F~~~G~i~~v~i~~d~~~~kg~a 221 (365)
-+.+|.+..+...........|+
T Consensus 126 ~~~iG~~i~vD~~t~~~~~~~~~ 148 (153)
T PF14111_consen 126 GSKIGEPIEVDENTLKRTRLDFA 148 (153)
T ss_pred HHhcCCeEEEEcCCCCcccccEE
Confidence 99999999988765543333344
No 228
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.05 E-value=1.5e+02 Score=30.51 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=58.8
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhhC----CCeeEEEEecCC-CC----------C---------------------
Q 017846 175 EVIRRTVYVSDIDQQ-VTEEQLATLFLTC----GQVVDCRICGDP-NS----------V--------------------- 217 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~d~-~~----------~--------------------- 217 (365)
...++.|-|-|+.|+ +.-++|.-+|+.| |.|.+|.|.... ++ +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445678999999986 6779999999865 589999885421 10 0
Q ss_pred -----------------ceEEEEEeCCHHHHHHHHH-hCCceeCC--eeEEEee
Q 017846 218 -----------------LRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLP 251 (365)
Q Consensus 218 -----------------kg~aFV~F~~~~~A~~Al~-l~g~~i~g--~~l~V~~ 251 (365)
.=||.|+|.+.+.|.+..+ +.|..+.. ..|.+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1289999999999999998 99999874 4555555
No 229
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=38.62 E-value=44 Score=32.41 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=48.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCC-eeEEEEecC-CCC---CceEEEEEeCCHHHHHHHHH-hCCcee
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRICGD-PNS---VLRFAFVEFTDEEGARAALS-LAGTML 242 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d-~~~---~kg~aFV~F~~~~~A~~Al~-l~g~~i 242 (365)
....|.|.+||+.+++++|.+-...|-. +....+... ... -.+.+||.|..+++...... ++|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4457889999999999999988887653 333333321 111 26889999999999877777 888765
No 230
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.15 E-value=37 Score=32.95 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=48.6
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC----CCcceEEEEEeCCHHHHHHHHH-hCCcee
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY----QHSTRIAFVEFAMAESAIAALN-CSGAVL 340 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~----~~~kg~afV~F~~~~~A~~Al~-lng~~l 340 (365)
..|.|.+||+..++++|.+-..+|--.+....+.+.. ..-.+.|||.|...++...-.. .+|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 5688999999999999999888852345555554322 2235689999999999777777 888876
No 231
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.78 E-value=63 Score=30.55 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=36.1
Q ss_pred EEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhh
Q 017846 221 AFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297 (365)
Q Consensus 221 aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 297 (365)
|||+|++..+|..|++ +.... ++.+++..|.. .+.|.=.||.....+..+|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe--------------------P~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE--------------------PDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC--------------------cccccccccCCChHHHHHHHHHH
Confidence 7999999999999998 44333 24557777631 13356666666666666665554
No 232
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=34.46 E-value=73 Score=24.44 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=29.1
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCC
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQ 313 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~~ 313 (365)
..|+-..+..+|..+|++.++.+|| .|.+|....-.+
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~g 58 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKG 58 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCC
Confidence 4556667889999999999999888 788887665543
No 233
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.58 E-value=42 Score=23.76 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=20.3
Q ss_pred HHHHHHHHhccCCcceEEecCCCCCCc
Q 017846 88 MRDLVDMLSKLNPMAAEFVPPSLANGQ 114 (365)
Q Consensus 88 ~~~L~~~Fs~~G~v~~v~v~~d~~t~~ 114 (365)
.++|+++|++.|+|.=+.|-.-..+..
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~~eS~~~ 34 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNPYESDED 34 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcccccCCC
Confidence 378999999999998777655444443
No 234
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.42 E-value=1.1e+02 Score=28.55 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=36.5
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCH
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMA 326 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~ 326 (365)
...-|++.||+.++--.||+..+.+. | ...++.+.. +.|-||+.|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~-~~~pm~iswkg----~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKR-ECTPMSISWKG----HFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhc-CCCceeEeeec----CCcceeEecCCc
Confidence 34569999999999999999999884 5 344555532 456799999763
No 235
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=32.62 E-value=1.3e+02 Score=25.19 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=40.1
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 333 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al 333 (365)
.-|+--.+...+..+|++.++..|+ .|..|..+.-++.-+ -|||.+....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K-KA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK-KAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce-EEEEEECCCCcHHHHH
Confidence 4555556788999999999998777 688887665543222 5999998777665443
No 236
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=32.45 E-value=1.1e+02 Score=23.22 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD 227 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~ 227 (365)
...-||||+++..+-|.-...+.+..+.-.-+-+..+.+ ..||+|-+..+
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTLGD 73 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEeCC
Confidence 345699999988888776666666555544444444444 67999988743
No 237
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.23 E-value=48 Score=30.75 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=30.3
Q ss_pred CCCCcEEEEcCCCCC------------CcHHHHHHHhhhCCCeeEEEEec
Q 017846 175 EVIRRTVYVSDIDQQ------------VTEEQLATLFLTCGQVVDCRICG 212 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~------------~te~~L~~~F~~~G~i~~v~i~~ 212 (365)
.....|||+.+||-. -+++.|+..|+.||.|..|.|+.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 345568999998842 35778999999999999998865
No 238
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=26.86 E-value=1.1e+02 Score=28.79 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=54.4
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---------CCcceEEEEEeCCHHHHHHHH----H-hCC--c
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---------QHSTRIAFVEFAMAESAIAAL----N-CSG--A 338 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~---------~~~kg~afV~F~~~~~A~~Al----~-lng--~ 338 (365)
.|.|...|+..+++-..+...|-+ ||.|++|.++.+. .+......+.|-+.+.+..-. + |.. .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~-~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVK-FGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhc-cCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 477999999999988888888888 6999999998765 123457789999988776543 2 333 2
Q ss_pred eeCCeeeEEeecC
Q 017846 339 VLGSLPIRLVSPS 351 (365)
Q Consensus 339 ~l~g~~l~~V~~a 351 (365)
.+....|. |+|.
T Consensus 94 ~L~S~~L~-lsFV 105 (309)
T PF10567_consen 94 KLKSESLT-LSFV 105 (309)
T ss_pred hcCCccee-EEEE
Confidence 35666666 5553
No 239
>CHL00030 rpl23 ribosomal protein L23
Probab=26.48 E-value=1.1e+02 Score=23.58 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=29.2
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCC
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQ 313 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~~ 313 (365)
.-|+--.+...+..+|++.++.+|| .|..|..+.-++
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~ 57 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPR 57 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCC
Confidence 4566667889999999999999888 788887765554
No 240
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=25.61 E-value=1.4e+02 Score=23.29 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=30.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCC
Q 017846 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD 227 (365)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~ 227 (365)
..-||||+++..+-+.-...+-+.++.-.-+-+-.+. +-.||+|-++..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~-~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN-TESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC-CCCCcEEEecCC
Confidence 4469999988777765554555555543333333443 334999988775
No 241
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=25.50 E-value=19 Score=36.56 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=55.7
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
.++|++.|+++.++-.+|..++..+ ..+..+.+.... ..-..++.|+|.-.-....|+. ||+..+....+. ..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i-~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s---e~ 306 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGI-PGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS---ES 306 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccC-chheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc---cc
Confidence 4689999999999999999999984 555555543322 1233467889987666666666 778777665554 34
Q ss_pred CCCCCCCCCCC
Q 017846 352 KTPVRPRAPRP 362 (365)
Q Consensus 352 ~~~~~~r~~~~ 362 (365)
..+...+..|+
T Consensus 307 en~~i~rrvr~ 317 (648)
T KOG2295|consen 307 ENPDITRRVRP 317 (648)
T ss_pred cccCccceecc
Confidence 44444444444
No 242
>PF14893 PNMA: PNMA
Probab=24.73 E-value=60 Score=31.24 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=32.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhh----hCCCeeEEEEecCCCCCceEEEEEeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFL----TCGQVVDCRICGDPNSVLRFAFVEFTD 227 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~----~~G~i~~v~i~~d~~~~kg~aFV~F~~ 227 (365)
..+.|.|.+||.++++++|++.+. ..|...-.--+..+..+.--++|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 456799999999999999888765 455533221111222233578888875
No 243
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.78 E-value=96 Score=27.04 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=32.4
Q ss_pred cceEEEEEeCCHHHHHHHHH-hCCceeCCe-eeEEeecCCCC
Q 017846 315 STRIAFVEFAMAESAIAALN-CSGAVLGSL-PIRLVSPSKTP 354 (365)
Q Consensus 315 ~kg~afV~F~~~~~A~~Al~-lng~~l~g~-~l~~V~~a~~~ 354 (365)
+.+...|.|.+++.|..|.. +++..|.|+ .++ .-++++.
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k-~yfaQ~~ 90 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK-LYFAQPG 90 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEE-EEEccCC
Confidence 44578899999999999998 999999988 787 6666554
No 244
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.31 E-value=3.3e+02 Score=20.49 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=41.7
Q ss_pred EEEEcCCCCCCcHHHHHHHhhh-CC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH
Q 017846 180 TVYVSDIDQQVTEEQLATLFLT-CG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 236 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~ 236 (365)
+-|+--.+...+..+|++.++. || .|.+|+.+.-+. ..-=|||++...+.|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcEEEEEEeCCCCcHHHHHH
Confidence 3555557899999999999985 66 678887776542 23469999998888877643
No 245
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.84 E-value=3.1e+02 Score=20.24 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=40.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhhh-CC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHH
Q 017846 180 TVYVSDIDQQVTEEQLATLFLT-CG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 235 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al 235 (365)
+-|+-..+...+..+|+..++. || .|.+|+.+.-+. ..--|||++...+.|...-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CceEEEEEECCCCcHHHHH
Confidence 3566667899999999999985 66 677777766542 2346999998877777643
No 246
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=21.63 E-value=1.4e+02 Score=25.44 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.6
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY 312 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~ 312 (365)
..|+-..+...+..+|++.++.+|| .|..|..+.-+
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~ 59 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVD 59 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecC
Confidence 4677778899999999999999888 68888766544
No 247
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.54 E-value=1.6e+02 Score=30.01 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=48.0
Q ss_pred cEEEEcCCCCCC---cHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeE
Q 017846 179 RTVYVSDIDQQV---TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPV 247 (365)
Q Consensus 179 ~~lfV~nLp~~~---te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l 247 (365)
.==+||||+.-. ....+.++=++||.|-.+++-.. -.|.-.+.+.|..|+..++..+.+|+.
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~-------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV-------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc-------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 335688887543 33566666679999998888543 368889999999999999999999986
Done!