Query 017846
Match_columns 365
No_of_seqs 375 out of 2569
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 05:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 3.7E-42 1.3E-46 322.5 22.0 242 74-354 41-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 7.4E-42 2.5E-46 319.2 22.6 236 75-356 23-266 (284)
3 4f02_A Polyadenylate-binding p 100.0 1.6E-34 5.4E-39 258.9 21.7 165 175-353 12-180 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 2E-33 6.9E-38 240.1 21.4 161 179-353 1-166 (166)
5 1l3k_A Heterogeneous nuclear r 100.0 9E-33 3.1E-37 243.0 21.8 176 174-359 9-188 (196)
6 2qfj_A FBP-interacting repress 100.0 2.1E-32 7.1E-37 244.3 21.4 178 177-359 27-210 (216)
7 1fxl_A Paraneoplastic encephal 100.0 6.1E-32 2.1E-36 231.1 21.3 158 178-351 2-167 (167)
8 1b7f_A Protein (SXL-lethal pro 100.0 5.2E-32 1.8E-36 232.1 20.6 159 177-351 2-168 (168)
9 3nmr_A Cugbp ELAV-like family 100.0 1.2E-31 4E-36 231.2 19.4 161 177-352 2-175 (175)
10 2cjk_A Nuclear polyadenylated 100.0 3.2E-32 1.1E-36 233.4 14.8 161 177-354 2-166 (167)
11 3tyt_A Heterogeneous nuclear r 100.0 1.6E-31 5.4E-36 238.1 19.8 170 177-351 3-204 (205)
12 4f02_A Polyadenylate-binding p 100.0 5.6E-32 1.9E-36 242.3 12.0 156 76-253 17-179 (213)
13 2yh0_A Splicing factor U2AF 65 100.0 2.2E-30 7.6E-35 228.0 21.3 174 177-356 3-196 (198)
14 2g4b_A Splicing factor U2AF 65 100.0 1.4E-30 4.7E-35 224.3 19.3 155 177-351 3-171 (172)
15 1fje_B Nucleolin RBD12, protei 100.0 2.4E-31 8.2E-36 230.0 14.3 163 174-354 9-174 (175)
16 2adc_A Polypyrimidine tract-bi 100.0 2E-30 6.7E-35 234.8 20.7 175 173-355 29-229 (229)
17 3pgw_A U1-A; protein-RNA compl 100.0 6.6E-30 2.3E-34 237.9 22.8 174 174-353 5-282 (282)
18 1qm9_A Polypyrimidine tract-bi 100.0 1.8E-30 6E-35 229.3 16.2 171 177-355 2-198 (198)
19 2ghp_A U4/U6 snRNA-associated 100.0 6E-30 2.1E-34 239.4 19.0 161 174-357 37-200 (292)
20 2cjk_A Nuclear polyadenylated 100.0 1.4E-30 5E-35 223.0 10.1 160 75-254 4-165 (167)
21 3smz_A Protein raver-1, ribonu 100.0 9.1E-29 3.1E-33 230.5 21.7 155 176-357 20-178 (284)
22 3md3_A Nuclear and cytoplasmic 100.0 2.9E-29 9.8E-34 214.2 15.0 158 76-253 2-165 (166)
23 3sde_A Paraspeckle component 1 100.0 1.4E-28 4.8E-33 227.0 20.6 154 175-354 19-179 (261)
24 2qfj_A FBP-interacting repress 100.0 3.8E-29 1.3E-33 223.1 15.8 162 74-257 28-207 (216)
25 1b7f_A Protein (SXL-lethal pro 100.0 3.2E-29 1.1E-33 214.7 13.6 158 75-252 4-168 (168)
26 1l3k_A Heterogeneous nuclear r 100.0 4.3E-29 1.5E-33 219.4 14.1 160 73-254 12-182 (196)
27 3nmr_A Cugbp ELAV-like family 100.0 5.6E-29 1.9E-33 214.4 12.7 158 75-252 4-174 (175)
28 1fxl_A Paraneoplastic encephal 100.0 9.1E-29 3.1E-33 211.3 13.1 157 76-252 4-167 (167)
29 2g4b_A Splicing factor U2AF 65 99.9 1.6E-26 5.3E-31 198.8 13.9 151 75-252 5-171 (172)
30 3tyt_A Heterogeneous nuclear r 99.9 6.7E-27 2.3E-31 208.1 11.7 150 76-252 6-204 (205)
31 2yh0_A Splicing factor U2AF 65 99.9 5.3E-27 1.8E-31 206.4 8.9 151 75-254 5-193 (198)
32 1fje_B Nucleolin RBD12, protei 99.9 5.9E-27 2E-31 202.3 7.9 154 74-254 13-173 (175)
33 3pgw_A U1-A; protein-RNA compl 99.9 8.3E-26 2.9E-30 210.2 14.3 151 75-253 10-281 (282)
34 1qm9_A Polypyrimidine tract-bi 99.9 1.1E-25 3.9E-30 198.3 12.1 149 76-254 5-196 (198)
35 2adc_A Polypyrimidine tract-bi 99.9 3.3E-25 1.1E-29 200.4 13.4 152 75-254 35-227 (229)
36 3sde_A Paraspeckle component 1 99.9 1.4E-24 4.9E-29 200.1 13.2 148 75-254 23-178 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 3.4E-23 1.2E-27 176.3 13.6 146 207-355 2-151 (158)
38 4f25_A Polyadenylate-binding p 99.9 4E-23 1.4E-27 166.7 10.7 109 177-291 4-113 (115)
39 2i2y_A Fusion protein consists 99.9 1.9E-21 6.5E-26 164.2 11.7 142 208-355 3-149 (150)
40 2kn4_A Immunoglobulin G-bindin 99.8 4E-21 1.4E-25 163.5 9.7 132 103-255 2-150 (158)
41 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-19 5.2E-24 141.7 11.1 77 177-253 18-97 (99)
42 4fxv_A ELAV-like protein 1; RN 99.8 3.8E-19 1.3E-23 139.5 11.2 78 275-354 19-99 (99)
43 2i2y_A Fusion protein consists 99.8 4.4E-19 1.5E-23 149.6 8.9 114 127-254 14-147 (150)
44 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.5E-18 1.9E-22 133.5 13.2 82 174-255 11-93 (103)
45 2hvz_A Splicing factor, argini 99.8 1.2E-18 4.3E-23 136.7 9.1 99 179-284 1-100 (101)
46 3s8s_A Histone-lysine N-methyl 99.8 3.7E-18 1.3E-22 136.4 11.6 78 176-253 4-84 (110)
47 2cq3_A RNA-binding protein 9; 99.8 1.2E-17 4.1E-22 131.5 13.7 82 174-255 11-93 (103)
48 2lxi_A RNA-binding protein 10; 99.8 1.2E-18 4.2E-23 134.4 7.7 77 178-254 1-82 (91)
49 4f25_A Polyadenylate-binding p 99.8 4.2E-18 1.4E-22 137.2 11.0 79 275-355 5-84 (115)
50 2lea_A Serine/arginine-rich sp 99.7 1.4E-18 4.9E-23 144.0 7.7 118 127-255 5-127 (135)
51 3lqv_A PRE-mRNA branch site pr 99.7 1.5E-18 5.3E-23 139.5 7.4 103 175-301 5-108 (115)
52 2dgx_A KIAA0430 protein; RRM d 99.7 1.1E-17 3.6E-22 130.3 11.5 79 176-255 7-90 (96)
53 2dgo_A Cytotoxic granule-assoc 99.7 2.4E-17 8.2E-22 132.4 13.8 85 173-257 10-97 (115)
54 1s79_A Lupus LA protein; RRM, 99.7 3.6E-18 1.2E-22 134.9 8.7 80 174-253 7-87 (103)
55 2lkz_A RNA-binding protein 5; 99.7 4.2E-18 1.4E-22 132.4 8.5 79 176-254 7-94 (95)
56 2lxi_A RNA-binding protein 10; 99.7 2.5E-18 8.7E-23 132.6 7.3 79 275-355 1-84 (91)
57 1whw_A Hypothetical protein ri 99.7 1.5E-17 5E-22 130.0 11.7 89 273-363 6-97 (99)
58 3p5t_L Cleavage and polyadenyl 99.7 1.9E-18 6.3E-23 132.9 6.4 77 179-255 2-83 (90)
59 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.2E-17 4.1E-22 127.2 10.5 78 177-254 5-85 (87)
60 2cpf_A RNA binding motif prote 99.7 1.2E-17 4E-22 130.3 10.6 81 176-256 3-89 (98)
61 2dgv_A HnRNP M, heterogeneous 99.7 1.3E-17 4.6E-22 128.3 10.8 81 175-255 5-86 (92)
62 2cq0_A Eukaryotic translation 99.7 1.6E-17 5.6E-22 130.8 11.5 83 173-255 10-95 (103)
63 2lea_A Serine/arginine-rich sp 99.7 3.3E-18 1.1E-22 141.9 7.8 122 220-358 6-131 (135)
64 2cpf_A RNA binding motif prote 99.7 1.8E-17 6.3E-22 129.2 11.6 84 274-359 4-93 (98)
65 3s8s_A Histone-lysine N-methyl 99.7 1.7E-17 5.9E-22 132.6 11.6 80 273-354 4-86 (110)
66 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.4E-17 4.9E-22 126.2 10.5 79 175-253 4-85 (85)
67 1sjq_A Polypyrimidine tract-bi 99.7 1.1E-17 3.7E-22 131.9 10.1 77 175-255 13-92 (105)
68 3s7r_A Heterogeneous nuclear r 99.7 2.1E-17 7.1E-22 126.0 11.4 80 173-252 6-87 (87)
69 2err_A Ataxin-2-binding protei 99.7 1E-17 3.5E-22 133.6 10.0 82 173-254 24-106 (109)
70 2cq3_A RNA-binding protein 9; 99.7 4.2E-17 1.4E-21 128.4 13.5 86 272-359 12-98 (103)
71 2dgs_A DAZ-associated protein 99.7 2.5E-17 8.6E-22 128.7 12.0 81 175-255 7-89 (99)
72 3md1_A Nuclear and cytoplasmic 99.7 2.9E-17 9.9E-22 123.9 11.8 76 179-254 2-80 (83)
73 1whw_A Hypothetical protein ri 99.7 2.5E-17 8.6E-22 128.7 11.7 81 175-255 5-88 (99)
74 2d9p_A Polyadenylate-binding p 99.7 2E-17 6.7E-22 130.3 11.1 81 175-255 12-93 (103)
75 2dnz_A Probable RNA-binding pr 99.7 2.9E-17 1E-21 127.2 11.9 80 176-255 3-85 (95)
76 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.7E-17 1.3E-21 128.7 12.6 85 273-359 13-98 (103)
77 2ywk_A Putative RNA-binding pr 99.7 1.8E-17 6.1E-22 128.4 10.5 80 174-253 12-93 (95)
78 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.2E-17 4.3E-22 143.0 10.5 134 223-358 11-156 (165)
79 2do4_A Squamous cell carcinoma 99.7 3.1E-17 1.1E-21 128.4 11.8 80 175-254 14-95 (100)
80 2e5h_A Zinc finger CCHC-type a 99.7 2.1E-17 7.1E-22 127.8 10.6 79 175-253 13-94 (94)
81 2dnz_A Probable RNA-binding pr 99.7 3.7E-17 1.3E-21 126.6 11.8 85 273-359 3-90 (95)
82 2cqc_A Arginine/serine-rich sp 99.7 3.8E-17 1.3E-21 126.5 11.8 80 174-253 11-93 (95)
83 2dnh_A Bruno-like 5, RNA bindi 99.7 4.9E-17 1.7E-21 128.4 12.5 81 175-255 12-97 (105)
84 2cpz_A CUG triplet repeat RNA- 99.7 4.7E-17 1.6E-21 130.8 12.6 86 272-359 22-110 (115)
85 2cpz_A CUG triplet repeat RNA- 99.7 3.8E-17 1.3E-21 131.4 12.0 81 175-255 22-105 (115)
86 1x5t_A Splicing factor 3B subu 99.7 2.6E-17 8.8E-22 127.8 10.6 80 176-255 3-86 (96)
87 2cph_A RNA binding motif prote 99.7 3.2E-17 1.1E-21 129.8 11.4 82 174-255 11-97 (107)
88 2lkz_A RNA-binding protein 5; 99.7 6.6E-18 2.3E-22 131.3 7.1 79 274-354 8-95 (95)
89 2x1f_A MRNA 3'-END-processing 99.7 3.1E-17 1E-21 127.5 10.9 77 178-254 2-81 (96)
90 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.1E-17 7.3E-22 129.8 10.1 86 273-360 10-98 (102)
91 2cq0_A Eukaryotic translation 99.7 4.4E-17 1.5E-21 128.2 11.9 85 272-358 12-99 (103)
92 2dnm_A SRP46 splicing factor; 99.7 2.1E-17 7.2E-22 130.1 9.9 82 174-255 9-93 (103)
93 2d9p_A Polyadenylate-binding p 99.7 3.8E-17 1.3E-21 128.6 11.2 85 272-358 12-97 (103)
94 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.9E-17 1E-21 129.0 10.5 81 175-255 9-92 (102)
95 2dgv_A HnRNP M, heterogeneous 99.7 3.6E-17 1.2E-21 125.9 10.6 84 273-358 6-90 (92)
96 1x5u_A Splicing factor 3B subu 99.7 3.9E-17 1.3E-21 129.0 11.0 83 173-255 10-95 (105)
97 1x5t_A Splicing factor 3B subu 99.7 3.5E-17 1.2E-21 127.0 10.5 85 273-359 3-91 (96)
98 2wbr_A GW182, gawky, LD47780P; 99.7 2.1E-17 7.3E-22 124.9 8.9 72 177-252 6-78 (89)
99 3p5t_L Cleavage and polyadenyl 99.7 6.8E-18 2.3E-22 129.7 6.4 81 276-358 2-87 (90)
100 2dnh_A Bruno-like 5, RNA bindi 99.7 5.4E-17 1.9E-21 128.1 11.8 85 272-358 12-101 (105)
101 2dgo_A Cytotoxic granule-assoc 99.7 9.2E-17 3.2E-21 129.0 13.3 86 272-359 12-100 (115)
102 2dgs_A DAZ-associated protein 99.7 6.2E-17 2.1E-21 126.4 11.8 85 273-359 8-94 (99)
103 2fy1_A RNA-binding motif prote 99.7 5.5E-17 1.9E-21 130.8 11.8 82 175-256 4-87 (116)
104 3md1_A Nuclear and cytoplasmic 99.7 7.2E-17 2.5E-21 121.7 11.7 77 276-354 2-81 (83)
105 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.6E-17 1.6E-21 123.9 10.6 79 274-354 5-86 (87)
106 2div_A TRNA selenocysteine ass 99.7 4.2E-17 1.4E-21 127.3 10.7 81 175-255 6-94 (99)
107 1x5s_A Cold-inducible RNA-bind 99.7 3.3E-17 1.1E-21 128.7 10.0 81 175-255 9-92 (102)
108 1sjq_A Polypyrimidine tract-bi 99.7 4.3E-17 1.5E-21 128.5 10.6 81 273-359 14-97 (105)
109 2do0_A HnRNP M, heterogeneous 99.7 1.2E-16 4.2E-21 128.0 13.4 81 175-255 12-94 (114)
110 3ucg_A Polyadenylate-binding p 99.7 4.9E-17 1.7E-21 124.3 10.6 78 177-254 5-84 (89)
111 2dgx_A KIAA0430 protein; RRM d 99.7 5.1E-17 1.8E-21 126.4 10.8 81 274-357 8-93 (96)
112 2cpi_A CCR4-NOT transcription 99.7 2.8E-17 9.5E-22 131.5 9.6 80 176-255 13-101 (111)
113 3ns6_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 131.1 7.2 78 176-253 4-91 (100)
114 1x4h_A RNA-binding protein 28; 99.7 7.6E-17 2.6E-21 128.5 12.0 81 175-255 12-101 (111)
115 4a8x_A RNA-binding protein wit 99.7 4.3E-17 1.5E-21 124.3 10.0 78 177-254 3-84 (88)
116 1x4a_A Splicing factor, argini 99.7 1.2E-16 4E-21 127.2 12.9 80 175-255 19-99 (109)
117 1p27_B RNA-binding protein 8A; 99.7 5.5E-17 1.9E-21 128.3 10.9 79 176-254 21-102 (106)
118 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.3E-17 1.5E-21 123.5 9.7 78 273-352 5-85 (85)
119 1x5s_A Cold-inducible RNA-bind 99.7 3.4E-17 1.2E-21 128.6 9.2 86 273-360 10-98 (102)
120 2la6_A RNA-binding protein FUS 99.7 7.2E-17 2.5E-21 126.1 11.0 80 174-253 9-99 (99)
121 1wi8_A EIF-4B, eukaryotic tran 99.7 6.6E-17 2.3E-21 127.5 10.8 80 175-255 12-94 (104)
122 2do4_A Squamous cell carcinoma 99.7 9.3E-17 3.2E-21 125.7 11.5 83 272-356 14-98 (100)
123 2dng_A Eukaryotic translation 99.7 9.9E-17 3.4E-21 126.3 11.7 80 175-255 12-93 (103)
124 2mss_A Protein (musashi1); RNA 99.7 1.6E-17 5.4E-22 123.0 6.6 73 180-252 1-75 (75)
125 2cqd_A RNA-binding region cont 99.7 1.1E-16 3.9E-21 128.7 12.3 81 174-255 13-96 (116)
126 2cqd_A RNA-binding region cont 99.7 1.3E-16 4.3E-21 128.4 12.5 88 272-362 14-104 (116)
127 2cq1_A PTB-like protein L; RRM 99.7 1.3E-16 4.4E-21 125.4 12.1 76 176-255 13-91 (101)
128 2do0_A HnRNP M, heterogeneous 99.7 1.6E-16 5.4E-21 127.4 12.9 82 273-356 13-96 (114)
129 2cqc_A Arginine/serine-rich sp 99.7 1.2E-16 4.2E-21 123.6 11.8 80 272-353 12-94 (95)
130 2jrs_A RNA-binding protein 39; 99.7 8.3E-17 2.8E-21 128.1 11.1 82 173-254 21-105 (108)
131 2dgp_A Bruno-like 4, RNA bindi 99.7 6.7E-17 2.3E-21 127.8 10.4 82 174-255 9-96 (106)
132 2nlw_A Eukaryotic translation 99.7 4.5E-17 1.5E-21 128.9 9.2 80 174-253 11-98 (105)
133 2dhg_A TRNA selenocysteine ass 99.7 8.7E-17 3E-21 126.7 10.8 81 175-255 6-90 (104)
134 1x4d_A Matrin 3; structural ge 99.7 3.9E-17 1.4E-21 128.4 8.7 76 176-255 13-92 (102)
135 3ulh_A THO complex subunit 4; 99.7 1.1E-16 3.7E-21 126.8 11.3 79 175-253 26-106 (107)
136 2x1f_A MRNA 3'-END-processing 99.7 1E-16 3.4E-21 124.6 10.9 81 275-357 2-85 (96)
137 1oo0_B CG8781-PA, drosophila Y 99.7 8.9E-17 3E-21 128.1 10.6 80 175-254 23-105 (110)
138 2khc_A Testis-specific RNP-typ 99.7 4.8E-17 1.7E-21 131.3 9.0 79 175-253 37-118 (118)
139 3pgw_S U1-70K; protein-RNA com 99.7 3.9E-17 1.3E-21 160.8 10.1 80 176-255 100-182 (437)
140 3r27_A HnRNP L, heterogeneous 99.7 1.4E-16 4.8E-21 124.3 11.1 76 175-254 18-96 (100)
141 2fy1_A RNA-binding motif prote 99.7 1E-16 3.4E-21 129.3 10.7 84 274-359 6-91 (116)
142 2ywk_A Putative RNA-binding pr 99.7 1.4E-16 4.7E-21 123.4 11.0 79 273-353 14-94 (95)
143 2cqg_A TDP-43, TAR DNA-binding 99.7 2.6E-16 9E-21 123.8 12.8 81 174-255 11-93 (103)
144 2cph_A RNA binding motif prote 99.7 1.5E-16 5E-21 126.0 11.3 84 272-357 12-100 (107)
145 2ad9_A Polypyrimidine tract-bi 99.7 9.3E-17 3.2E-21 129.6 10.2 76 176-255 29-107 (119)
146 2cpe_A RNA-binding protein EWS 99.7 1.3E-16 4.4E-21 127.8 11.0 82 174-255 11-103 (113)
147 2err_A Ataxin-2-binding protei 99.7 6.7E-17 2.3E-21 128.8 9.2 81 272-354 26-107 (109)
148 3n9u_C Cleavage and polyadenyl 99.7 1E-16 3.5E-21 136.1 10.8 77 177-253 54-135 (156)
149 2krb_A Eukaryotic translation 99.7 2.9E-17 1E-21 123.6 6.6 72 178-249 1-80 (81)
150 1x4h_A RNA-binding protein 28; 99.7 2E-16 7E-21 126.0 11.9 84 273-358 13-105 (111)
151 2dh8_A DAZ-associated protein 99.7 1.1E-16 3.9E-21 126.4 10.3 82 174-255 12-95 (105)
152 2rs2_A Musashi-1, RNA-binding 99.7 1.5E-16 5E-21 126.9 10.9 82 173-254 20-103 (109)
153 2e5h_A Zinc finger CCHC-type a 99.7 1.1E-16 3.8E-21 123.7 9.9 78 273-352 14-94 (94)
154 1x4g_A Nucleolysin TIAR; struc 99.7 1.8E-16 6.2E-21 126.1 11.4 78 174-255 21-99 (109)
155 1x5u_A Splicing factor 3B subu 99.7 1.4E-16 4.9E-21 125.7 10.7 85 273-359 13-100 (105)
156 2dgw_A Probable RNA-binding pr 99.7 2.3E-16 7.8E-21 121.3 11.5 79 175-254 7-86 (91)
157 2dnm_A SRP46 splicing factor; 99.7 8.8E-17 3E-21 126.5 9.4 82 273-356 11-95 (103)
158 2jvr_A Nucleolar protein 3; RN 99.7 8.1E-17 2.8E-21 128.7 9.2 78 175-254 25-104 (111)
159 2kxn_B Transformer-2 protein h 99.7 9.9E-17 3.4E-21 131.8 10.0 82 173-254 41-125 (129)
160 2dnq_A RNA-binding protein 4B; 99.7 2.1E-16 7.2E-21 121.3 11.2 75 175-255 5-80 (90)
161 2kt5_A RNA and export factor-b 99.7 2.4E-16 8.1E-21 128.4 12.1 82 175-256 32-115 (124)
162 1x4e_A RNA binding motif, sing 99.7 2.8E-17 9.7E-22 124.6 6.1 78 176-253 3-83 (85)
163 2dng_A Eukaryotic translation 99.7 3.1E-16 1.1E-20 123.4 12.2 83 273-358 13-97 (103)
164 1oo0_B CG8781-PA, drosophila Y 99.7 1.5E-16 5.1E-21 126.7 10.3 83 272-356 23-108 (110)
165 2dgp_A Bruno-like 4, RNA bindi 99.7 1.6E-16 5.4E-21 125.7 10.2 84 273-358 11-100 (106)
166 4a8x_A RNA-binding protein wit 99.7 1.5E-16 5.1E-21 121.3 9.7 79 274-354 3-85 (88)
167 1u6f_A Tcubp1, RNA-binding pro 99.7 3.5E-16 1.2E-20 129.9 12.8 83 173-255 37-122 (139)
168 2cpe_A RNA-binding protein EWS 99.7 2.4E-16 8.3E-21 126.1 11.4 84 273-358 13-107 (113)
169 2jrs_A RNA-binding protein 39; 99.7 2.1E-16 7.3E-21 125.7 10.8 81 272-354 23-106 (108)
170 1wez_A HnRNP H', FTP-3, hetero 99.7 6.5E-17 2.2E-21 127.4 7.7 80 175-255 12-92 (102)
171 2div_A TRNA selenocysteine ass 99.7 1.6E-16 5.5E-21 124.0 9.8 81 273-355 7-95 (99)
172 2hgl_A HNRPF protein, heteroge 99.7 8.1E-17 2.8E-21 133.4 8.5 80 174-253 40-123 (136)
173 2db1_A Heterogeneous nuclear r 99.7 1.1E-16 3.6E-21 129.5 9.0 79 175-253 14-96 (118)
174 2ad9_A Polypyrimidine tract-bi 99.7 1.7E-16 5.7E-21 128.1 10.0 84 272-361 28-114 (119)
175 1wex_A Hypothetical protein (r 99.7 1.7E-16 5.8E-21 125.4 9.9 76 176-255 13-91 (104)
176 1why_A Hypothetical protein ri 99.7 2.6E-16 8.7E-21 122.5 10.8 76 175-254 14-92 (97)
177 2ytc_A PRE-mRNA-splicing facto 99.7 2.1E-16 7E-21 119.8 9.9 75 175-253 9-85 (85)
178 1x4b_A Heterogeneous nuclear r 99.7 2.5E-16 8.7E-21 126.6 11.0 79 177-255 26-106 (116)
179 2cpy_A RNA-binding protein 12; 99.7 8.3E-17 2.9E-21 129.3 8.1 79 175-253 12-92 (114)
180 2kt5_A RNA and export factor-b 99.7 2.7E-16 9.2E-21 128.1 11.3 89 272-362 32-122 (124)
181 3ucg_A Polyadenylate-binding p 99.7 3.2E-16 1.1E-20 119.7 11.0 79 274-354 5-85 (89)
182 1x4a_A Splicing factor, argini 99.7 5.6E-16 1.9E-20 123.2 12.7 82 273-357 20-102 (109)
183 2cqp_A RNA-binding protein 12; 99.7 1.1E-16 3.7E-21 124.8 8.4 79 176-254 13-94 (98)
184 2dhg_A TRNA selenocysteine ass 99.7 2.5E-16 8.5E-21 124.1 10.5 84 273-358 7-94 (104)
185 1p27_B RNA-binding protein 8A; 99.7 1.8E-16 6.1E-21 125.4 9.7 80 273-354 21-103 (106)
186 2cq1_A PTB-like protein L; RRM 99.7 4.2E-16 1.4E-20 122.4 11.7 81 273-359 13-96 (101)
187 1x4c_A Splicing factor, argini 99.7 6E-16 2.1E-20 123.0 12.7 75 176-255 13-93 (108)
188 2la4_A Nuclear and cytoplasmic 99.7 1.7E-16 5.9E-21 124.4 9.4 75 175-253 24-99 (101)
189 1x5o_A RNA binding motif, sing 99.7 2.9E-16 1E-20 125.8 10.9 80 174-253 21-110 (114)
190 1x4g_A Nucleolysin TIAR; struc 99.7 4.6E-16 1.6E-20 123.8 11.9 83 272-360 22-105 (109)
191 2dnn_A RNA-binding protein 12; 99.7 2.1E-16 7.3E-21 125.9 9.9 75 178-253 16-91 (109)
192 2jwn_A Embryonic polyadenylate 99.7 2.5E-16 8.5E-21 128.2 10.6 79 177-255 35-115 (124)
193 1wi8_A EIF-4B, eukaryotic tran 99.7 4.4E-16 1.5E-20 122.7 11.6 83 273-358 13-98 (104)
194 2jwn_A Embryonic polyadenylate 99.7 3.4E-16 1.2E-20 127.4 11.2 84 272-357 33-118 (124)
195 2dnq_A RNA-binding protein 4B; 99.7 5.1E-16 1.8E-20 119.1 11.6 78 273-358 6-84 (90)
196 3s7r_A Heterogeneous nuclear r 99.7 3.6E-16 1.2E-20 119.0 10.6 77 273-351 9-87 (87)
197 2dis_A Unnamed protein product 99.7 3.6E-16 1.2E-20 124.2 11.0 80 176-255 6-92 (109)
198 1s79_A Lupus LA protein; RRM, 99.7 1.5E-16 5.2E-21 125.5 8.7 78 274-353 10-88 (103)
199 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.5E-17 1.9E-21 127.2 6.1 80 174-254 15-97 (100)
200 3pgw_S U1-70K; protein-RNA com 99.7 4.2E-17 1.4E-21 160.6 6.7 82 273-356 100-184 (437)
201 1p1t_A Cleavage stimulation fa 99.7 1.7E-16 5.7E-21 125.0 8.9 78 177-254 7-87 (104)
202 2ki2_A SS-DNA binding protein 99.7 3E-17 1E-21 125.9 4.4 76 179-255 2-80 (90)
203 2khc_A Testis-specific RNP-typ 99.7 3.5E-16 1.2E-20 126.1 11.0 79 272-352 37-118 (118)
204 2cq4_A RNA binding motif prote 99.7 1.6E-16 5.6E-21 127.4 8.9 77 177-253 24-102 (114)
205 2dh8_A DAZ-associated protein 99.7 3.5E-16 1.2E-20 123.5 10.5 84 273-358 14-99 (105)
206 2dnp_A RNA-binding protein 14; 99.7 4.8E-16 1.7E-20 119.2 11.1 75 175-255 6-81 (90)
207 2cpi_A CCR4-NOT transcription 99.7 3E-16 1E-20 125.4 10.2 82 273-356 13-103 (111)
208 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.3E-17 2.1E-21 120.2 5.8 73 179-252 1-76 (77)
209 2dgt_A RNA-binding protein 30; 99.7 8.2E-16 2.8E-20 118.4 12.4 75 175-255 7-82 (92)
210 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.1E-16 1.8E-20 131.6 12.2 82 174-255 35-119 (156)
211 2wbr_A GW182, gawky, LD47780P; 99.7 2.4E-16 8.3E-21 119.1 8.9 72 275-352 7-79 (89)
212 3ns6_A Eukaryotic translation 99.7 5.8E-17 2E-21 127.1 5.7 78 274-353 5-92 (100)
213 2la6_A RNA-binding protein FUS 99.7 3.5E-16 1.2E-20 122.2 10.1 78 273-352 11-99 (99)
214 2fc9_A NCL protein; structure 99.7 4.1E-16 1.4E-20 122.2 10.5 84 272-360 12-97 (101)
215 1u6f_A Tcubp1, RNA-binding pro 99.7 5.5E-16 1.9E-20 128.7 11.9 86 272-359 39-127 (139)
216 1wg5_A Heterogeneous nuclear r 99.7 2E-16 6.8E-21 124.9 8.8 80 175-254 12-93 (104)
217 1x4b_A Heterogeneous nuclear r 99.7 8.6E-16 3E-20 123.5 12.7 85 272-358 24-110 (116)
218 3ex7_B RNA-binding protein 8A; 99.7 2.6E-16 8.8E-21 128.5 9.6 81 175-255 19-102 (126)
219 1iqt_A AUF1, heterogeneous nuc 99.7 5.1E-17 1.7E-21 120.2 4.9 73 180-252 1-75 (75)
220 2ek1_A RNA-binding protein 12; 99.7 1.4E-16 4.9E-21 123.3 7.6 77 177-253 14-93 (95)
221 2cpj_A Non-POU domain-containi 99.7 3.6E-16 1.2E-20 122.1 9.8 76 175-254 12-88 (99)
222 3ulh_A THO complex subunit 4; 99.7 5.9E-16 2E-20 122.6 11.1 79 272-352 26-106 (107)
223 2fc9_A NCL protein; structure 99.7 5.1E-16 1.8E-20 121.7 10.5 78 175-255 12-91 (101)
224 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.2E-16 1.4E-20 129.3 10.5 78 175-252 60-140 (140)
225 2dgt_A RNA-binding protein 30; 99.7 9.6E-16 3.3E-20 118.0 11.8 80 273-360 8-88 (92)
226 2a3j_A U1 small nuclear ribonu 99.7 3E-16 1E-20 128.4 9.4 78 176-254 27-109 (127)
227 2jvo_A Nucleolar protein 3; nu 99.7 4.8E-16 1.6E-20 123.7 10.3 76 173-254 26-102 (108)
228 2e5j_A Methenyltetrahydrofolat 99.7 3.7E-16 1.3E-20 121.7 9.5 77 175-254 16-93 (97)
229 3r27_A HnRNP L, heterogeneous 99.7 4.5E-16 1.6E-20 121.4 9.9 77 272-354 18-97 (100)
230 2xnq_A Nuclear polyadenylated 99.7 8E-16 2.7E-20 119.9 11.2 75 174-254 18-94 (97)
231 2m2b_A RNA-binding protein 10; 99.7 1.1E-16 3.7E-21 131.9 6.6 80 175-255 20-108 (131)
232 2e5g_A U6 snRNA-specific termi 99.7 8.9E-16 3.1E-20 118.7 11.4 77 176-255 6-82 (94)
233 2krb_A Eukaryotic translation 99.6 1.9E-16 6.4E-21 119.1 7.2 72 276-349 2-81 (81)
234 2cqg_A TDP-43, TAR DNA-binding 99.6 1.7E-15 5.8E-20 119.1 13.1 83 273-358 13-97 (103)
235 2nlw_A Eukaryotic translation 99.6 3.7E-16 1.3E-20 123.6 9.1 80 273-354 13-100 (105)
236 1x4e_A RNA binding motif, sing 99.6 1.4E-16 4.8E-21 120.8 6.5 78 273-352 3-83 (85)
237 1whx_A Hypothetical protein ri 99.6 2.7E-16 9.3E-21 125.7 8.4 75 177-255 9-84 (111)
238 2kxn_B Transformer-2 protein h 99.6 4.1E-16 1.4E-20 128.1 9.7 81 272-354 43-126 (129)
239 1x4d_A Matrin 3; structural ge 99.6 2.8E-16 9.6E-21 123.5 8.1 78 273-356 13-94 (102)
240 1wf1_A RNA-binding protein RAL 99.6 3.9E-16 1.3E-20 124.4 9.0 77 274-358 26-104 (110)
241 2dgu_A Heterogeneous nuclear r 99.6 1.4E-15 4.8E-20 119.7 12.1 75 176-256 9-84 (103)
242 3ex7_B RNA-binding protein 8A; 99.6 3.6E-16 1.2E-20 127.6 8.9 85 273-359 20-107 (126)
243 2ki2_A SS-DNA binding protein 99.6 7.6E-17 2.6E-21 123.6 4.5 82 276-360 2-86 (90)
244 2cpd_A Apobec-1 stimulating pr 99.6 2.1E-15 7.1E-20 117.8 12.8 75 175-255 12-89 (99)
245 2cqp_A RNA-binding protein 12; 99.6 3.5E-16 1.2E-20 121.8 8.3 80 273-354 13-95 (98)
246 2hvz_A Splicing factor, argini 99.6 3.5E-16 1.2E-20 122.6 8.2 78 276-358 1-79 (101)
247 1x4c_A Splicing factor, argini 99.6 1.4E-15 4.6E-20 120.9 11.7 78 274-358 14-97 (108)
248 2jvr_A Nucleolar protein 3; RN 99.6 3.8E-16 1.3E-20 124.7 8.5 77 274-354 27-105 (111)
249 2dnp_A RNA-binding protein 14; 99.6 1.1E-15 3.8E-20 117.2 10.7 79 273-359 7-86 (90)
250 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-15 4.2E-20 129.2 11.9 84 273-358 37-123 (156)
251 1nu4_A U1A RNA binding domain; 99.6 2.6E-16 8.9E-21 122.3 7.0 79 175-254 5-88 (97)
252 3n9u_C Cleavage and polyadenyl 99.6 7.3E-16 2.5E-20 130.8 10.4 78 274-353 54-136 (156)
253 2ek1_A RNA-binding protein 12; 99.6 3.7E-16 1.3E-20 120.9 7.9 78 274-353 14-94 (95)
254 2jvo_A Nucleolar protein 3; nu 99.6 9.1E-16 3.1E-20 122.0 10.3 77 272-356 28-105 (108)
255 2mss_A Protein (musashi1); RNA 99.6 2.9E-16 9.9E-21 116.1 6.9 73 277-351 1-75 (75)
256 1p1t_A Cleavage stimulation fa 99.6 3.2E-16 1.1E-20 123.4 7.4 81 274-356 7-90 (104)
257 2lmi_A GRSF-1, G-rich sequence 99.6 1.4E-16 4.9E-21 126.4 5.4 79 175-253 8-90 (107)
258 2rs2_A Musashi-1, RNA-binding 99.6 1.2E-15 4.3E-20 121.4 10.8 82 272-355 22-105 (109)
259 1why_A Hypothetical protein ri 99.6 9.4E-16 3.2E-20 119.3 9.8 77 273-355 15-94 (97)
260 1wf1_A RNA-binding protein RAL 99.6 1.1E-15 3.8E-20 121.7 10.5 73 176-254 25-99 (110)
261 2kvi_A Nuclear polyadenylated 99.6 4.5E-16 1.5E-20 121.0 7.8 75 175-255 7-83 (96)
262 2dgw_A Probable RNA-binding pr 99.6 1.3E-15 4.5E-20 116.9 10.4 78 274-354 9-87 (91)
263 1wex_A Hypothetical protein (r 99.6 1E-15 3.5E-20 120.9 9.8 81 273-359 13-96 (104)
264 1wez_A HnRNP H', FTP-3, hetero 99.6 5.5E-16 1.9E-20 122.0 8.2 84 273-359 13-97 (102)
265 2m2b_A RNA-binding protein 10; 99.6 3E-16 1E-20 129.2 7.0 82 272-356 20-110 (131)
266 2cqh_A IGF-II mRNA-binding pro 99.6 6.9E-16 2.4E-20 119.0 8.4 79 274-359 7-88 (93)
267 2dis_A Unnamed protein product 99.6 1.3E-15 4.4E-20 121.0 10.2 82 274-357 7-95 (109)
268 2cqh_A IGF-II mRNA-binding pro 99.6 7.7E-16 2.6E-20 118.8 8.5 76 175-255 5-83 (93)
269 2cq4_A RNA binding motif prote 99.6 3.1E-16 1.1E-20 125.7 6.4 80 273-354 23-104 (114)
270 2hgn_A Heterogeneous nuclear r 99.6 1.1E-16 3.8E-21 133.0 3.9 80 175-255 43-123 (139)
271 2cpx_A Hypothetical protein FL 99.6 1.2E-15 4E-20 122.4 9.8 79 175-255 22-105 (115)
272 2xnq_A Nuclear polyadenylated 99.6 2.3E-15 7.8E-20 117.3 11.2 76 272-355 19-96 (97)
273 1x4f_A Matrin 3; structural ge 99.6 3.9E-16 1.3E-20 124.6 6.8 76 175-254 22-101 (112)
274 1fjc_A Nucleolin RBD2, protein 99.6 6.2E-16 2.1E-20 120.0 7.8 77 175-254 13-90 (96)
275 1wg1_A KIAA1579 protein, homol 99.6 9.2E-16 3.2E-20 117.2 8.7 73 177-254 4-77 (88)
276 2dgu_A Heterogeneous nuclear r 99.6 2.4E-15 8.1E-20 118.4 11.2 80 274-361 10-90 (103)
277 2la4_A Nuclear and cytoplasmic 99.6 1.3E-15 4.6E-20 119.2 9.6 75 273-353 25-100 (101)
278 2cpd_A Apobec-1 stimulating pr 99.6 5.8E-15 2E-19 115.2 13.1 79 272-358 12-93 (99)
279 1x5o_A RNA binding motif, sing 99.6 2.2E-15 7.5E-20 120.7 10.9 80 273-354 23-112 (114)
280 1fjc_A Nucleolin RBD2, protein 99.6 1.4E-15 4.8E-20 117.9 9.4 82 272-358 13-95 (96)
281 2dha_A FLJ20171 protein; RRM d 99.6 5E-16 1.7E-20 126.4 7.0 78 176-253 21-103 (123)
282 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.7E-16 1.6E-20 121.8 6.6 80 272-354 16-98 (100)
283 2hgm_A HNRPF protein, heteroge 99.6 4.7E-16 1.6E-20 126.9 6.8 78 175-253 39-119 (126)
284 1wel_A RNA-binding protein 12; 99.6 2.5E-16 8.7E-21 128.3 5.1 79 175-253 22-102 (124)
285 2a3j_A U1 small nuclear ribonu 99.6 1.3E-15 4.3E-20 124.7 9.2 80 273-355 27-111 (127)
286 1fj7_A Nucleolin RBD1, protein 99.6 2.9E-16 1E-20 123.0 5.2 78 176-254 15-94 (101)
287 2fc8_A NCL protein; structure 99.6 2.6E-15 8.9E-20 117.7 10.7 79 174-255 11-92 (102)
288 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.3E-15 7.9E-20 128.8 11.2 79 176-254 70-151 (165)
289 3q2s_C Cleavage and polyadenyl 99.6 8E-16 2.7E-20 138.8 8.6 77 177-253 67-148 (229)
290 3d2w_A TAR DNA-binding protein 99.6 2E-15 6.8E-20 115.7 9.6 74 175-254 8-83 (89)
291 1x5p_A Negative elongation fac 99.6 6.3E-15 2.2E-19 114.6 12.6 75 175-255 12-87 (97)
292 2xs2_A Deleted in azoospermia- 99.6 4.8E-16 1.6E-20 122.0 6.0 76 177-253 8-84 (102)
293 2dnn_A RNA-binding protein 12; 99.6 2.4E-15 8.2E-20 119.7 9.7 76 275-353 16-92 (109)
294 2e44_A Insulin-like growth fac 99.6 2.3E-15 7.8E-20 116.7 9.4 77 176-254 13-91 (96)
295 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.4E-15 1.5E-19 123.1 11.6 78 272-351 60-140 (140)
296 2hgn_A Heterogeneous nuclear r 99.6 3.1E-16 1.1E-20 130.3 4.5 125 219-359 2-128 (139)
297 2cpy_A RNA-binding protein 12; 99.6 8.9E-16 3E-20 123.2 7.0 81 273-355 13-95 (114)
298 2cq2_A Hypothetical protein LO 99.6 2E-15 6.7E-20 120.7 8.8 75 176-254 23-105 (114)
299 2cpx_A Hypothetical protein FL 99.6 2.1E-15 7.3E-20 120.9 9.1 82 273-358 23-109 (115)
300 2fc8_A NCL protein; structure 99.6 5.7E-15 1.9E-19 115.8 11.4 82 272-358 12-96 (102)
301 2ytc_A PRE-mRNA-splicing facto 99.6 4.3E-15 1.5E-19 112.4 10.3 74 273-352 10-85 (85)
302 1uaw_A Mouse-musashi-1; RNP-ty 99.6 7.3E-16 2.5E-20 114.4 5.8 73 276-351 1-76 (77)
303 2db1_A Heterogeneous nuclear r 99.6 1.7E-15 5.8E-20 122.4 8.4 78 273-352 15-96 (118)
304 1wg5_A Heterogeneous nuclear r 99.6 3.3E-15 1.1E-19 117.8 9.8 82 273-356 13-96 (104)
305 2e5j_A Methenyltetrahydrofolat 99.6 2.4E-15 8E-20 117.0 8.8 77 273-354 17-94 (97)
306 2cpj_A Non-POU domain-containi 99.6 4.3E-15 1.5E-19 115.9 10.3 79 273-357 13-92 (99)
307 2kvi_A Nuclear polyadenylated 99.6 1.4E-15 4.6E-20 118.2 7.4 80 272-359 7-88 (96)
308 1nu4_A U1A RNA binding domain; 99.6 1.6E-15 5.3E-20 117.8 7.5 80 273-355 6-90 (97)
309 3lqv_A PRE-mRNA branch site pr 99.6 2.8E-15 9.4E-20 120.3 9.1 78 274-354 7-85 (115)
310 1sjr_A Polypyrimidine tract-bi 99.6 4.3E-15 1.5E-19 126.0 10.4 77 177-255 45-124 (164)
311 1whx_A Hypothetical protein ri 99.6 3.3E-15 1.1E-19 119.4 9.2 79 274-358 9-88 (111)
312 2e5g_A U6 snRNA-specific termi 99.6 1.2E-14 4.2E-19 112.3 12.0 80 274-358 7-86 (94)
313 3egn_A RNA-binding protein 40; 99.6 2.1E-15 7E-20 125.9 8.1 80 175-255 42-130 (143)
314 2hzc_A Splicing factor U2AF 65 99.6 3.5E-15 1.2E-19 113.4 8.4 71 177-251 5-86 (87)
315 3zzy_A Polypyrimidine tract-bi 99.6 7.8E-15 2.7E-19 119.9 10.9 76 177-255 27-106 (130)
316 1iqt_A AUF1, heterogeneous nuc 99.6 7.6E-16 2.6E-20 113.8 4.5 73 277-351 1-75 (75)
317 2f3j_A RNA and export factor b 99.6 3.3E-15 1.1E-19 129.4 8.8 80 175-254 85-166 (177)
318 2hgl_A HNRPF protein, heteroge 99.6 1.8E-15 6.1E-20 125.3 6.8 78 274-353 43-124 (136)
319 1wf0_A TDP-43, TAR DNA-binding 99.6 2.8E-15 9.6E-20 114.4 7.2 75 177-255 4-78 (88)
320 2lcw_A RNA-binding protein FUS 99.4 1.6E-16 5.5E-21 127.9 0.0 80 175-254 4-94 (116)
321 1fj7_A Nucleolin RBD1, protein 99.6 1.4E-15 4.7E-20 119.2 5.2 81 273-356 15-97 (101)
322 2xs2_A Deleted in azoospermia- 99.6 2.8E-15 9.6E-20 117.6 6.7 81 273-356 7-88 (102)
323 1wg1_A KIAA1579 protein, homol 99.6 6.3E-15 2.2E-19 112.5 8.4 76 274-356 4-80 (88)
324 3beg_B Splicing factor, argini 99.6 5.3E-15 1.8E-19 118.9 8.3 73 177-254 15-93 (115)
325 3egn_A RNA-binding protein 40; 99.6 3.9E-15 1.3E-19 124.3 7.6 81 273-356 43-132 (143)
326 1x4f_A Matrin 3; structural ge 99.6 3.4E-15 1.2E-19 119.1 6.9 81 272-358 22-106 (112)
327 1x5p_A Negative elongation fac 99.6 3.8E-14 1.3E-18 110.1 12.5 76 273-356 13-89 (97)
328 2lmi_A GRSF-1, G-rich sequence 99.6 1.9E-15 6.4E-20 119.9 5.0 80 273-354 9-92 (107)
329 2dnl_A Cytoplasmic polyadenyla 99.6 1.5E-14 5.1E-19 116.0 10.2 74 176-252 6-85 (114)
330 3q2s_C Cleavage and polyadenyl 99.6 5.5E-15 1.9E-19 133.2 8.2 78 274-353 67-149 (229)
331 3zzy_A Polypyrimidine tract-bi 99.6 2E-14 6.9E-19 117.4 10.7 77 274-355 27-107 (130)
332 2voo_A Lupus LA protein; RNA-b 99.6 1.7E-14 5.8E-19 126.7 10.8 77 178-254 109-186 (193)
333 2e5i_A Heterogeneous nuclear r 99.5 2.1E-14 7.2E-19 116.7 10.0 72 180-255 27-102 (124)
334 1sjr_A Polypyrimidine tract-bi 99.5 1.6E-14 5.4E-19 122.5 9.4 78 274-355 45-125 (164)
335 1wel_A RNA-binding protein 12; 99.5 6.3E-15 2.2E-19 120.0 6.6 79 273-353 23-103 (124)
336 2j8a_A Histone-lysine N-methyl 99.5 1.5E-14 5.1E-19 116.6 8.5 75 179-253 3-94 (136)
337 2f3j_A RNA and export factor b 99.5 9.9E-15 3.4E-19 126.4 8.0 85 273-359 86-172 (177)
338 2hgm_A HNRPF protein, heteroge 99.5 6.7E-15 2.3E-19 120.1 6.5 76 274-352 41-119 (126)
339 2e44_A Insulin-like growth fac 99.5 1.9E-14 6.6E-19 111.4 8.9 77 274-354 14-92 (96)
340 2bz2_A Negative elongation fac 99.5 2.1E-14 7.2E-19 116.5 9.3 75 174-254 35-110 (121)
341 2voo_A Lupus LA protein; RNA-b 99.5 7E-14 2.4E-18 122.7 13.3 120 227-355 63-188 (193)
342 3beg_B Splicing factor, argini 99.5 1.6E-14 5.3E-19 116.1 8.4 77 274-357 15-97 (115)
343 2lcw_A RNA-binding protein FUS 99.3 6.2E-16 2.1E-20 124.4 0.0 83 273-357 5-98 (116)
344 2diu_A KIAA0430 protein; struc 99.5 2.1E-14 7E-19 109.6 8.4 70 178-255 8-84 (96)
345 2dha_A FLJ20171 protein; RRM d 99.5 6.4E-15 2.2E-19 119.8 5.9 78 273-352 21-103 (123)
346 2cq2_A Hypothetical protein LO 99.5 2E-14 6.9E-19 114.8 8.6 80 273-358 23-110 (114)
347 2pe8_A Splicing factor 45; RRM 99.5 5.6E-14 1.9E-18 111.0 11.1 78 176-253 6-92 (105)
348 1wf0_A TDP-43, TAR DNA-binding 99.5 1.8E-14 6.2E-19 109.9 7.6 79 274-358 4-82 (88)
349 2diu_A KIAA0430 protein; struc 99.5 4.8E-14 1.6E-18 107.6 9.8 73 275-357 8-87 (96)
350 2pe8_A Splicing factor 45; RRM 99.5 6.7E-14 2.3E-18 110.6 11.1 80 272-353 5-93 (105)
351 3d2w_A TAR DNA-binding protein 99.5 4.4E-14 1.5E-18 108.2 9.2 75 273-355 9-85 (89)
352 2e5i_A Heterogeneous nuclear r 99.5 6E-14 2E-18 114.0 10.1 74 276-355 26-103 (124)
353 2hzc_A Splicing factor U2AF 65 99.5 6.2E-14 2.1E-18 106.4 9.6 71 274-350 5-86 (87)
354 3u1l_A PRE-mRNA-splicing facto 99.5 4.3E-14 1.5E-18 127.4 8.4 77 175-255 131-229 (240)
355 2bz2_A Negative elongation fac 99.5 8E-14 2.7E-18 113.0 8.6 77 273-357 37-114 (121)
356 2dit_A HIV TAT specific factor 99.5 4.4E-13 1.5E-17 107.1 11.0 79 174-254 11-101 (112)
357 2dnl_A Cytoplasmic polyadenyla 99.4 2.7E-13 9.2E-18 108.6 9.4 69 274-346 7-81 (114)
358 2dit_A HIV TAT specific factor 99.4 7.4E-13 2.5E-17 105.7 11.4 81 272-356 12-104 (112)
359 2j8a_A Histone-lysine N-methyl 99.4 4.8E-13 1.6E-17 107.9 8.1 77 276-354 3-96 (136)
360 1jmt_A Splicing factor U2AF 35 99.4 1.8E-13 6.2E-18 107.9 5.1 70 183-252 20-103 (104)
361 3u1l_A PRE-mRNA-splicing facto 99.4 4.7E-13 1.6E-17 120.7 8.2 80 274-359 133-234 (240)
362 3v4m_A Splicing factor U2AF 65 99.4 8.1E-13 2.8E-17 104.3 8.5 78 273-352 3-95 (105)
363 3v4m_A Splicing factor U2AF 65 99.4 1.1E-12 3.7E-17 103.6 8.2 77 177-253 4-95 (105)
364 3ue2_A Poly(U)-binding-splicin 99.4 1.3E-12 4.6E-17 105.2 8.2 79 272-352 17-107 (118)
365 1jmt_A Splicing factor U2AF 35 99.4 4.5E-13 1.5E-17 105.6 5.0 70 280-351 20-103 (104)
366 2d9o_A DNAJ (HSP40) homolog, s 99.3 1E-11 3.5E-16 97.0 11.4 68 285-359 27-95 (100)
367 3ue2_A Poly(U)-binding-splicin 99.3 5.2E-12 1.8E-16 101.7 8.7 77 177-253 19-107 (118)
368 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4.2E-16 96.5 9.4 63 188-255 27-90 (100)
369 3tht_A Alkylated DNA repair pr 99.3 1.1E-11 3.8E-16 117.5 9.0 75 175-253 15-97 (345)
370 3s6e_A RNA-binding protein 39; 99.2 4.2E-11 1.4E-15 95.8 9.6 76 176-253 5-91 (114)
371 3s6e_A RNA-binding protein 39; 99.2 3.8E-11 1.3E-15 96.0 9.1 75 274-352 6-91 (114)
372 3tht_A Alkylated DNA repair pr 99.2 3.7E-11 1.3E-15 113.9 8.9 75 272-352 15-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.0 1E-09 3.5E-14 82.9 8.6 72 177-254 6-85 (91)
374 2dnr_A Synaptojanin-1; RRM dom 99.0 1.3E-09 4.5E-14 82.3 8.6 74 273-354 5-86 (91)
375 1owx_A Lupus LA protein, SS-B, 99.0 2.2E-09 7.6E-14 86.1 8.9 73 176-252 16-93 (121)
376 1owx_A Lupus LA protein, SS-B, 98.9 4.7E-09 1.6E-13 84.2 8.3 72 273-350 16-92 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.8 7E-09 2.4E-13 78.7 7.3 70 177-252 14-92 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.7 1.2E-08 4.1E-13 77.4 5.6 73 272-352 12-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.7 3.6E-08 1.2E-12 87.8 7.3 65 189-253 140-211 (222)
380 3dxb_A Thioredoxin N-terminall 98.6 4.2E-08 1.4E-12 87.3 7.2 64 287-352 141-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.5 3.9E-07 1.3E-11 70.5 8.8 69 275-349 21-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.3 3.8E-06 1.3E-10 65.0 8.7 75 173-251 16-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.2 1.4E-05 4.8E-10 61.3 10.3 89 176-288 6-99 (104)
384 1wey_A Calcipressin 1; structu 97.8 0.00016 5.6E-09 55.6 9.6 76 274-355 4-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.4 0.0013 4.6E-08 50.3 10.3 71 274-351 7-81 (104)
386 1wey_A Calcipressin 1; structu 97.4 0.0013 4.4E-08 50.6 9.5 73 177-253 4-82 (104)
387 1wwh_A Nucleoporin 35, nucleop 97.2 0.002 6.7E-08 50.9 8.7 71 177-252 23-94 (119)
388 1uw4_A UPF3X; nonsense mediate 97.1 0.0021 7E-08 48.5 8.2 74 179-252 2-85 (91)
389 1whv_A Poly(A)-specific ribonu 97.1 0.0017 6E-08 49.1 7.7 58 174-238 12-70 (100)
390 1wwh_A Nucleoporin 35, nucleop 97.1 0.0035 1.2E-07 49.5 9.7 71 274-351 23-94 (119)
391 1uw4_A UPF3X; nonsense mediate 97.1 0.0023 7.9E-08 48.2 8.3 66 276-342 2-72 (91)
392 1whv_A Poly(A)-specific ribonu 96.7 0.0041 1.4E-07 47.0 6.4 53 276-336 17-70 (100)
393 3ctr_A Poly(A)-specific ribonu 96.5 0.0034 1.2E-07 47.7 4.8 52 180-238 8-60 (101)
394 3p3d_A Nucleoporin 53; structu 96.2 0.0094 3.2E-07 47.7 6.0 73 179-252 8-96 (132)
395 3ctr_A Poly(A)-specific ribonu 96.1 0.0092 3.1E-07 45.3 5.4 52 277-336 8-60 (101)
396 3pq1_A Poly(A) RNA polymerase; 95.6 0.0066 2.3E-07 59.3 3.8 63 173-239 48-110 (464)
397 2l08_A Regulator of nonsense t 95.6 0.0095 3.2E-07 45.2 3.8 66 276-342 10-80 (97)
398 3p3d_A Nucleoporin 53; structu 95.5 0.024 8.3E-07 45.3 6.0 73 276-351 8-96 (132)
399 2l08_A Regulator of nonsense t 95.4 0.013 4.4E-07 44.5 3.7 75 178-252 9-93 (97)
400 3pq1_A Poly(A) RNA polymerase; 94.8 0.016 5.4E-07 56.7 3.6 58 272-334 50-107 (464)
401 3d45_A Poly(A)-specific ribonu 88.4 1.3 4.5E-05 43.7 8.5 56 176-238 438-494 (507)
402 3d45_A Poly(A)-specific ribonu 77.8 6.1 0.00021 38.9 8.2 54 276-337 441-495 (507)
403 4e8u_A Putative uncharacterize 45.0 36 0.0012 28.2 5.5 57 180-237 14-82 (172)
404 3j21_T 50S ribosomal protein L 36.6 76 0.0026 23.0 5.5 57 277-334 24-81 (86)
405 2g0c_A ATP-dependent RNA helic 33.3 32 0.0011 23.8 3.0 59 286-352 12-75 (76)
406 4e8u_A Putative uncharacterize 32.2 71 0.0024 26.4 5.3 48 277-326 14-72 (172)
407 1vq8_S 50S ribosomal protein L 24.3 1.1E+02 0.0037 22.1 4.5 56 277-333 23-79 (85)
408 3u5e_X 60S ribosomal protein L 22.0 1.3E+02 0.0043 24.1 4.8 56 277-333 80-136 (142)
409 4a17_R RPL23A, 60S ribosomal p 21.0 1.3E+02 0.0045 24.2 4.8 55 278-333 89-144 (150)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.7e-42 Score=322.49 Aligned_cols=242 Identities=17% Similarity=0.204 Sum_probs=202.6
Q ss_pred hhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhh
Q 017846 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (365)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~ 153 (365)
....++|||+|++++++|+++|++||+|.+|+|++|+.+ + + |||||.|.+ .+ +|.. |++
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~-~---------g~afV~f~~-~~------~A~~--A~~ 99 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--N-F---------RFARIEFAR-YD------GALA--AIT 99 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--S-S---------EEEEEEESS-HH------HHHH--HHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--C-c---------EEEEEEECC-HH------HHHH--HHH
Confidence 346788999999999999999999999999999999865 3 5 999999999 55 6888 885
Q ss_pred hcCCC--CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCC-CeeEEEEecCC-CCCceEEEEEeCCHH
Q 017846 154 RNGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDP-NSVLRFAFVEFTDEE 229 (365)
Q Consensus 154 ~~~~~--~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~-~~~kg~aFV~F~~~~ 229 (365)
+++. .|++ +++.++ ..++|||+|||+++++++|+++|+.|| .|.+|+++.++ +.++|||||+|.+.+
T Consensus 100 -~~~~~~~g~~---i~v~~~-----~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~ 170 (292)
T 2ghp_A 100 -KTHKVVGQNE---IIVSHL-----TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE 170 (292)
T ss_dssp -TTTCEETTEE---CEEEEC-----CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHH
T ss_pred -hCCcEeCCcE---EEEEEC-----CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHH
Confidence 5554 6666 444332 578999999999999999999999999 99999999987 457999999999999
Q ss_pred HHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCC-CCHHHHHHHhhhcCCceEEEE
Q 017846 230 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLR 307 (365)
Q Consensus 230 ~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~~G~I~~v~ 307 (365)
+|.+|++ |+|..+.|++|.|.++.+....... .......++|||+|||.. +++++|+++|++ ||.|..|+
T Consensus 171 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~-------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~ 242 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT-------DSATLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKIN 242 (292)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCC----------------CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEE
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-------cccCCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEE
Confidence 9999999 9999999999999998643221110 112345689999999999 999999999999 59999999
Q ss_pred EeccC---CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCCC
Q 017846 308 LLGDY---QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 308 i~~d~---~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~~~ 354 (365)
|+++. +.++|||||+|.+.++|.+|+.|||..|+|++|+ |.|+++.
T Consensus 243 i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~-V~~a~~k 291 (292)
T 2ghp_A 243 IPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREIS-VSLADKK 291 (292)
T ss_dssp CCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEE-EEECCCC
T ss_pred EEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEE-EEEecCC
Confidence 99875 6789999999999999999999999999999999 9998864
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=7.4e-42 Score=319.22 Aligned_cols=236 Identities=17% Similarity=0.168 Sum_probs=205.3
Q ss_pred hhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
...++|||++++++++|+++|++|| |.+|++ +++ + |||||.|.+ .+ +|.. |+..
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~-~---------g~afV~f~~-~~------~A~~--A~~~ 76 (284)
T 3smz_A 23 RKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKY-K---------GTAFVTLLN-GE------QAEA--AINA 76 (284)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETT-T---------TEEEEEESS-HH------HHHH--HHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecC-C---------CEEEEEeCC-HH------HHHH--HHHH
Confidence 3567899999999999999999999 999998 334 6 999999999 56 6888 9988
Q ss_pred cCCC--CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHH
Q 017846 155 NGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEG 230 (365)
Q Consensus 155 ~~~~--~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~ 230 (365)
++.. .|++ +++.++ ...++|||+|||+++++++|+++|+.||.|.+++++.++. .++|||||+|.+.++
T Consensus 77 l~~~~~~g~~---i~v~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 149 (284)
T 3smz_A 77 FHQSRLRERE---LSVQLQ----PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 149 (284)
T ss_dssp HTTCEETTEE---CEEEEC----CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred cCCCeeCCeE---EEEEec----CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHH
Confidence 8776 6776 444332 2457999999999999999999999999999999998864 469999999999999
Q ss_pred HHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCC-CHHHHHHHhhhcCCceEEEEE
Q 017846 231 ARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV-TQGDIKLFFESVCGEVQRLRL 308 (365)
Q Consensus 231 A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-te~~L~~~F~~~~G~I~~v~i 308 (365)
|.+|++ ++|..+.|++|.|.++..... .......++|||+|||..+ ++++|+++|++ ||.|.+|.|
T Consensus 150 a~~A~~~l~~~~~~g~~i~v~~a~~~~~-----------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~i 217 (284)
T 3smz_A 150 AARAKSDLLGKPLGPRTLYVHWTDAGQL-----------TPALLHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQL 217 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCGGGC-----------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEEE
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCCC-----------CcccCCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEEE
Confidence 999997 999999999999999864321 1112456899999999995 99999999999 699999999
Q ss_pred eccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCC
Q 017846 309 LGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPVR 356 (365)
Q Consensus 309 ~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~~ 356 (365)
+++. +.++|+|||+|.+.++|.+|+. |||..|+|++|+ |.|+++...
T Consensus 218 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-v~~a~~~~~ 266 (284)
T 3smz_A 218 ACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR-VSFCAPGPP 266 (284)
T ss_dssp EECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE-EEECCSSSC
T ss_pred EECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE-EEEecCCCc
Confidence 9876 6789999999999999999999 999999999999 999987644
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.6e-34 Score=258.90 Aligned_cols=165 Identities=25% Similarity=0.383 Sum_probs=148.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++|+++|+++|++||.|.+|+|++|+. .++|||||+|.+.++|.+|++ +++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34567999999999999999999999999999999999874 469999999999999999998 999999999999999
Q ss_pred CCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHH
Q 017846 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIA 331 (365)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~ 331 (365)
+... .........+|||+|||..+++++|+++|++ ||.|.+|+|+++.+.++|||||+|.+.++|.+
T Consensus 92 ~~~~------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~ 158 (213)
T 4f02_A 92 SQRD------------PSLRKSGVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENGSKGYGFVHFETQEAAER 158 (213)
T ss_dssp CCCC------------THHHHHCTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTEEEEEEEEEESSHHHHHH
T ss_pred cccc------------ccccccccccceECCcccccHHHHHHHHHhh-cCCeEEEEeeccCCCCceEEEEEeCCHHHHHH
Confidence 7421 1222334578999999999999999999999 59999999999988899999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCC
Q 017846 332 ALN-CSGAVLGSLPIRLVSPSKT 353 (365)
Q Consensus 332 Al~-lng~~l~g~~l~~V~~a~~ 353 (365)
|++ |||..|+|++|+ |.++++
T Consensus 159 Ai~~lng~~~~g~~i~-V~~a~~ 180 (213)
T 4f02_A 159 AIEKMNGMLLNDRKVF-VGRFKS 180 (213)
T ss_dssp HHHHHTTCEETTEECE-EEECCC
T ss_pred HHHHhCCCEECCEEEE-EEEcCC
Confidence 999 999999999999 999875
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=240.08 Aligned_cols=161 Identities=22% Similarity=0.346 Sum_probs=146.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAI 256 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~ 256 (365)
++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ ++|..+.|++|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999999884 579999999999999999997 99999999999999985332
Q ss_pred CCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH
Q 017846 257 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN 334 (365)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~ 334 (365)
. ......++|||+|||..+++++|+++|++ ||.|.++.++++. +.++|||||+|.+.++|.+|+.
T Consensus 81 ~------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 81 Q------------SSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp C------------CCCTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred C------------CCCCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 1 11234689999999999999999999999 6999999999875 6789999999999999999999
Q ss_pred -hCCceeCCeeeEEeecCCC
Q 017846 335 -CSGAVLGSLPIRLVSPSKT 353 (365)
Q Consensus 335 -lng~~l~g~~l~~V~~a~~ 353 (365)
|||..++|++|+ |.|+++
T Consensus 148 ~l~g~~~~g~~i~-v~~a~~ 166 (166)
T 3md3_A 148 SMQGQDLNGRPLR-INWAAK 166 (166)
T ss_dssp HHTTCEETTEECE-EEESCC
T ss_pred HhCCCccCCcEEE-EEecCC
Confidence 999999999999 999874
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=9e-33 Score=243.01 Aligned_cols=176 Identities=17% Similarity=0.271 Sum_probs=147.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~ 251 (365)
.+...++|||+|||+++|+++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|+++++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 344678999999999999999999999999999999999874 469999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHH
Q 017846 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESA 329 (365)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A 329 (365)
+........ .......++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|
T Consensus 89 ~~~~~~~~~--------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 89 AVSREDSQR--------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp CCC-------------------CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred ccCcccccc--------cccCCCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 864322111 111334589999999999999999999999 6999999999885 67899999999999999
Q ss_pred HHHHHhCCceeCCeeeEEeecCCCCCCCCC
Q 017846 330 IAALNCSGAVLGSLPIRLVSPSKTPVRPRA 359 (365)
Q Consensus 330 ~~Al~lng~~l~g~~l~~V~~a~~~~~~r~ 359 (365)
.+|+..+|..|+|+.|. |.++.+....+.
T Consensus 160 ~~A~~~~~~~~~G~~i~-v~~a~~k~~~~~ 188 (196)
T 1l3k_A 160 DKIVIQKYHTVNGHNCE-VRKALSKQEMAS 188 (196)
T ss_dssp HHHHHCSCCEETTEECE-EEECC-------
T ss_pred HHHHHhCCcEECCEEEE-EEecCChhHhcc
Confidence 99999779999999999 999987765544
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.1e-32 Score=244.34 Aligned_cols=178 Identities=25% Similarity=0.337 Sum_probs=151.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
..++|||+|||+++++++|+++|+.||.|.+|++++++. .++|||||+|.+.++|.+|++ +++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 457899999999999999999999999999999999873 479999999999999999999 99999999999999875
Q ss_pred CCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHH
Q 017846 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 331 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~ 331 (365)
....... ............++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|.+
T Consensus 107 ~~~~~~~---~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 107 NIGQAQP---IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCGGGHH---HHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred Cccccch---hhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 3210000 00000112345689999999999999999999999 6999999999885 6789999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCCCCCCCC
Q 017846 332 ALN-CSGAVLGSLPIRLVSPSKTPVRPRA 359 (365)
Q Consensus 332 Al~-lng~~l~g~~l~~V~~a~~~~~~r~ 359 (365)
|+. |||..|+|++|+ |.+++++..+++
T Consensus 183 A~~~l~g~~~~g~~i~-V~~a~~~~~~~~ 210 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLR-VGKAVTPPMPLL 210 (216)
T ss_dssp HHHHHTTCBCSSSBCE-EEECSSCSSTTS
T ss_pred HHHHccCCEeCCcEEE-EEEecCCCCCCC
Confidence 999 999999999999 999998866655
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6.1e-32 Score=231.10 Aligned_cols=158 Identities=23% Similarity=0.405 Sum_probs=142.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
.++|||+|||+++++++|+++|+.||.|.+++++.++. .++|||||+|.++++|.+|++ ++|..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999873 468999999999999999998 999999999999999853
Q ss_pred CCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHH
Q 017846 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 332 (365)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~A 332 (365)
.. .....++|||+|||..+++++|+++|++ ||.|..+.++++. +.++|||||+|.+.++|.+|
T Consensus 82 ~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A 146 (167)
T 1fxl_A 82 SS--------------ASIRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 146 (167)
T ss_dssp CC--------------GGGTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred Cc--------------ccCCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHH
Confidence 21 1234578999999999999999999999 5999999999875 67899999999999999999
Q ss_pred HH-hCCceeCCee--eEEeecC
Q 017846 333 LN-CSGAVLGSLP--IRLVSPS 351 (365)
Q Consensus 333 l~-lng~~l~g~~--l~~V~~a 351 (365)
++ |||..+.|+. |+ |.||
T Consensus 147 ~~~l~g~~~~g~~~~i~-v~~A 167 (167)
T 1fxl_A 147 IKGLNGQKPSGATEPIT-VKFA 167 (167)
T ss_dssp HHHHTTCCCTTCSSCCE-EEEC
T ss_pred HHHhcCCccCCCccceE-EEeC
Confidence 99 9999999975 88 8775
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5.2e-32 Score=232.11 Aligned_cols=159 Identities=23% Similarity=0.402 Sum_probs=144.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
..++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.++++|.+|++ ++|..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 467899999999999999999999999999999999864 368999999999999999998 99999999999999985
Q ss_pred CCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHH
Q 017846 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 331 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~ 331 (365)
+... ....++|||+|||..+++++|+++|++ ||.|..+.++++. +.++|||||+|.+.++|.+
T Consensus 82 ~~~~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 82 PGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp CCSS--------------TTTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCcc--------------cCCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 3211 224589999999999999999999999 6999999999886 6789999999999999999
Q ss_pred HHH-hCCceeCC--eeeEEeecC
Q 017846 332 ALN-CSGAVLGS--LPIRLVSPS 351 (365)
Q Consensus 332 Al~-lng~~l~g--~~l~~V~~a 351 (365)
|+. |||..+.| ++|+ |.||
T Consensus 147 A~~~l~g~~~~g~~~~l~-V~~A 168 (168)
T 1b7f_A 147 AISALNNVIPEGGSQPLS-VRLA 168 (168)
T ss_dssp HHHHHTTCCCTTCSSCCE-EEEC
T ss_pred HHHHhcCCEecCCCeEEE-EEeC
Confidence 999 99999988 9999 9885
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=1.2e-31 Score=231.25 Aligned_cols=161 Identities=24% Similarity=0.342 Sum_probs=142.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC----CCceEEEEEeCCHHHHHHHHH-hCCceeC---CeeEE
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN----SVLRFAFVEFTDEEGARAALS-LAGTMLG---FYPVR 248 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~----~~kg~aFV~F~~~~~A~~Al~-l~g~~i~---g~~l~ 248 (365)
..++|||+|||+++++++|+++|++||.|.+|++++++. .++|||||+|.+.++|.+|++ +++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 467999999999999999999999999999999999874 369999999999999999998 9998876 67888
Q ss_pred EeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHH
Q 017846 249 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAE 327 (365)
Q Consensus 249 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~ 327 (365)
+.++.... ......++|||+|||..+++++|+++|++ ||.|.+|.++++. +.++|||||+|.+.+
T Consensus 82 ~~~~~~~~-------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 82 MKPADSEK-------------NNAVEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEECGGGC-------------CSCGGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred Eccccccc-------------cccCCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 88875321 11234689999999999999999999999 5999999999886 678999999999999
Q ss_pred HHHHHHH-hCCceeC---CeeeEEeecCC
Q 017846 328 SAIAALN-CSGAVLG---SLPIRLVSPSK 352 (365)
Q Consensus 328 ~A~~Al~-lng~~l~---g~~l~~V~~a~ 352 (365)
+|.+|+. |||..+. +++|+ |.|+.
T Consensus 148 ~A~~A~~~l~g~~~~~g~~~~l~-V~~ad 175 (175)
T 3nmr_A 148 MAQTAIKAMHQAQTMEGCSSPMV-VKFAD 175 (175)
T ss_dssp HHHHHHHHHTTSCCCTTCSSCCE-EEECC
T ss_pred HHHHHHHHhcCCcccCCCCCCeE-EEecC
Confidence 9999999 9998776 49999 99874
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=3.2e-32 Score=233.42 Aligned_cols=161 Identities=17% Similarity=0.260 Sum_probs=145.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
..++|||+|||+++|+++|+++|++||.|.+|++++++ +.++|||||+|.++++|.+|++ +++.+.|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 46799999999999999999999999999999999986 4579999999999999999999 35789999999998742
Q ss_pred CCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHH
Q 017846 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 332 (365)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~A 332 (365)
.......++|||+|||..+++++|+++|++ ||.|.+|.++++. +.++|||||+|.+.++|.+|
T Consensus 81 --------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 81 --------------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp --------------HHHHHHCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred --------------hhhccCCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 112334679999999999999999999999 6999999999885 68999999999999999999
Q ss_pred HHhCCceeCCeeeEEeecCCCC
Q 017846 333 LNCSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 333 l~lng~~l~g~~l~~V~~a~~~ 354 (365)
++++|..++|++|+ |.|+++.
T Consensus 146 ~~~~~~~~~g~~i~-V~~a~pk 166 (167)
T 2cjk_A 146 CQNKFIDFKDRKIE-IKRAEPR 166 (167)
T ss_dssp HHCSEECSSSSCEE-EEECCCC
T ss_pred HhCCCEEeCCeEEE-EeecCCC
Confidence 99999999999999 9998764
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=1.6e-31 Score=238.14 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=141.3
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 177 IRRTVYVSDID-QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 177 ~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
..++|||+||| ..+++++|+++|++||.|.+|++++++ +|||||+|.++++|.+|++ |||..+.|++|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 46799999999 899999999999999999999998763 6999999999999999998 999999999999999864
Q ss_pred CCC-CCCCCCC---------------CCCch-------hhcccccEEEeeCCCCCCCHHHHHHHhhhcCCce--EEEEEe
Q 017846 255 AIA-PVNPTFL---------------PRSED-------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEV--QRLRLL 309 (365)
Q Consensus 255 ~~~-~~~~~~~---------------~~~~~-------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I--~~v~i~ 309 (365)
... +..+... .+... ....+.++|||+|||+.+++++|+++|++ ||.| .+|+++
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~~ 158 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE-LGVKRPTSVKVF 158 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSEEEEC
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEE
Confidence 322 1100000 00000 00235679999999999999999999999 5999 899999
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCe----eeEEeecC
Q 017846 310 GDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL----PIRLVSPS 351 (365)
Q Consensus 310 ~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~----~l~~V~~a 351 (365)
.+.+.++|||||+|.+.++|.+||. |||..|.|+ ++. |+++
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~-vk~~ 204 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT-LKLC 204 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE-CEEE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE-EEec
Confidence 8887778999999999999999999 999999887 466 6553
No 12
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=5.6e-32 Score=242.29 Aligned_cols=156 Identities=20% Similarity=0.314 Sum_probs=139.6
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
..++|+|+|++++++|+++|++||+|.+|+|++|+.|+++ + |||||.|.+ .. +|.. |++.+
T Consensus 17 tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~-~---------G~afV~F~~-~~------~A~~--Ai~~~ 77 (213)
T 4f02_A 17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRS-L---------GYAYVNFQQ-PA------DAER--ALDTM 77 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE-E---------EEEEEEESS-HH------HHHH--HHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCc-c---------ccccceeCC-HH------HHHH--HHHHh
Confidence 5789999999999999999999999999999999999998 8 999999999 55 6888 99988
Q ss_pred CCC--CCcccccccCCccc----cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHH
Q 017846 156 GYS--QGKRRMNCRTSNAQ----QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEE 229 (365)
Q Consensus 156 ~~~--~gk~~~~~~~~~~~----~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~ 229 (365)
++. .|+. +++.++. .......+|||+|||+++++++|+++|++||.|.+|+|++|.++++|||||+|.+.+
T Consensus 78 ~~~~~~g~~---i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 78 NFDVIKGKP---VRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp TTCEETTEE---CEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred hhhhcCCcc---cccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 887 6776 4333332 222345789999999999999999999999999999999998888999999999999
Q ss_pred HHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 230 GARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 230 ~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
+|.+|++ |||..|.|++|.|.+++
T Consensus 155 ~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhCCCEECCEEEEEEEcC
Confidence 9999998 99999999999999985
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.2e-30 Score=228.03 Aligned_cols=174 Identities=19% Similarity=0.288 Sum_probs=145.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhC----C-------CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCe
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY 245 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~ 245 (365)
..++|||+|||+++++++|+++|++| | .|.++++.. ++|||||+|.++++|.+|+.++|..+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~----~~g~afV~F~~~~~A~~Al~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET----TTTEEEEEESCSHHHHHHGGGTTEEETTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC----CCCEEEEEeCCHHHHHHHHHhcCCEEcCc
Confidence 46899999999999999999999999 5 677777754 46899999999999999999999999999
Q ss_pred eEEEeeCCCCCCCCCCCCCC------CCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcce
Q 017846 246 PVRVLPSKTAIAPVNPTFLP------RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTR 317 (365)
Q Consensus 246 ~l~V~~a~~~~~~~~~~~~~------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg 317 (365)
+|+|.++............+ ..........++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEECTTTCSEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeecCCCCCcce
Confidence 99999986543221110000 001111346789999999999999999999999 5999999999884 67899
Q ss_pred EEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCC
Q 017846 318 IAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPVR 356 (365)
Q Consensus 318 ~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~~ 356 (365)
||||+|.+.++|.+|+. |||..|+|++|+ |.++++...
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~~a~~~~~ 196 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLL-VQRASVGAK 196 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECE-EEESCCCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEE-EEECCCCCC
Confidence 99999999999999999 999999999999 999987643
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.4e-30 Score=224.29 Aligned_cols=155 Identities=21% Similarity=0.342 Sum_probs=140.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhC----C-------CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCe
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY 245 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~ 245 (365)
..++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.++++|.+|+.++|..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~----~g~afV~f~~~~~A~~A~~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT----TTEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC----CCEEEEEeCCHHHHHHHHHhCCcEecCc
Confidence 46799999999999999999999999 7 7888888655 5899999999999999999999999999
Q ss_pred eEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEe
Q 017846 246 PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEF 323 (365)
Q Consensus 246 ~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F 323 (365)
+|.|.++..... ....++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|
T Consensus 79 ~i~v~~~~~~~~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 79 SLKIRRPHDYQP--------------LPGAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp ECEEECCSSCCC--------------CTTTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred eeeecCCcccCC--------------CCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEecCCCCCcceEEEEEe
Confidence 999999753211 123589999999999999999999999 6999999999884 67899999999
Q ss_pred CCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 324 AMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 324 ~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
.+.++|.+|+. |||..++|++|+ |.||
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~-V~~A 171 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLL-VQRA 171 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECE-EEEC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEE-EEeC
Confidence 99999999999 999999999999 9986
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.4e-31 Score=229.99 Aligned_cols=163 Identities=18% Similarity=0.255 Sum_probs=140.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~ 251 (365)
.+...++|||+|||+++++++|+++|..||.+..+ ++.+. +.++|||||+|.++++|.+|++++|..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 34567899999999999999999999999977662 22222 4578999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHH
Q 017846 252 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIA 331 (365)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~ 331 (365)
+..... ......++|||+|||..+++++|+++|++ ||.|..+ ...+.++|||||+|.+.++|.+
T Consensus 88 ~~~~~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~---~~~~~~~g~afV~f~~~~~A~~ 151 (175)
T 1fje_B 88 PKGRDS------------KKVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV---SQDGKSKGIAYIEFKSEADAEK 151 (175)
T ss_dssp CCCSSC------------STTGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE---CSSSSCCSEEEEECSSHHHHHH
T ss_pred CCCccc------------cccccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe---cCCCCCceEEEEEECCHHHHHH
Confidence 863211 11235689999999999999999999999 6998877 4457899999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCCC
Q 017846 332 ALN-CSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 332 Al~-lng~~l~g~~l~~V~~a~~~ 354 (365)
|+. |||..|+|++|+ |.|+++.
T Consensus 152 A~~~l~g~~~~g~~i~-v~~a~~k 174 (175)
T 1fje_B 152 NLEEKQGAEIDGRSVS-LYYTGEK 174 (175)
T ss_dssp HHHHHTEEEETTEEEE-EEECSSC
T ss_pred HHHHhCCCEECCeEEE-EEecCCC
Confidence 999 999999999999 9998764
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2e-30 Score=234.79 Aligned_cols=175 Identities=28% Similarity=0.349 Sum_probs=147.2
Q ss_pred cCCCCCcEEEEcCCCC-CCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 173 QDEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
......++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|.+|++ ++|..+.|++|.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3445678999999999 99999999999999999999999886 6899999999999999998 99999999999999
Q ss_pred eCCCCCCCCCCC------------------CC-CCC--chhhcccccEEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEE
Q 017846 251 PSKTAIAPVNPT------------------FL-PRS--EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRL 308 (365)
Q Consensus 251 ~a~~~~~~~~~~------------------~~-~~~--~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i 308 (365)
++.......... +. +.. ......+.++|||+|||..+++++|+++|++ || .|.+|++
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~~i~~v~i 184 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKF 184 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHT-TSCCEEEEEE
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHH-cCCCeeEEEE
Confidence 986432110000 00 000 0011345789999999999999999999999 59 9999999
Q ss_pred eccCCCcceEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeecCCCCC
Q 017846 309 LGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRLVSPSKTPV 355 (365)
Q Consensus 309 ~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~-g~~l~~V~~a~~~~ 355 (365)
+++ .+|||||+|.+.++|.+|+. |||..+. |++|+ |.|+++++
T Consensus 185 ~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~-v~~a~~~i 229 (229)
T 2adc_A 185 FQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR-VSFSKSTI 229 (229)
T ss_dssp CSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCE-EEECSSCC
T ss_pred EEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEE-EEEecCCC
Confidence 764 36799999999999999999 9999999 99999 99998864
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=6.6e-30 Score=237.95 Aligned_cols=174 Identities=22% Similarity=0.340 Sum_probs=144.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEE
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~ 248 (365)
+....++|||+|||+++++++|+ ++|++||.|.+|++++ .+.++|||||+|.+.++|.+|++ |||..+.|++|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 34567899999999999999977 8999999999999987 35579999999999999999997 999999999999
Q ss_pred EeeCCCCCCCCC---CCC--------------------------------------------------------------
Q 017846 249 VLPSKTAIAPVN---PTF-------------------------------------------------------------- 263 (365)
Q Consensus 249 V~~a~~~~~~~~---~~~-------------------------------------------------------------- 263 (365)
|.+++....... ..+
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 999864321000 000
Q ss_pred ------------CC--------------------CCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc
Q 017846 264 ------------LP--------------------RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD 311 (365)
Q Consensus 264 ------------~~--------------------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d 311 (365)
.+ ..........++|||+|||..+++++|+++|++ ||.|.+|+++++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~~~~ 242 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEEecC
Confidence 00 000011335688999999999999999999999 699999999976
Q ss_pred CCCcceEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeecCCC
Q 017846 312 YQHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRLVSPSKT 353 (365)
Q Consensus 312 ~~~~kg~afV~F~~~~~A~~Al~-lng~~l~-g~~l~~V~~a~~ 353 (365)
. +|||||+|.+.++|.+|+. |||..|. |++|+ |+|++.
T Consensus 243 ~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~-v~~akk 282 (282)
T 3pgw_A 243 R---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMK-ISFAKK 282 (282)
T ss_pred C---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEE-EEEecC
Confidence 4 5799999999999999999 9999999 99999 999873
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.8e-30 Score=229.28 Aligned_cols=171 Identities=27% Similarity=0.344 Sum_probs=144.8
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 177 IRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 177 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
..++|||+|||+ ++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|.+|++ |+|..+.|++|.|.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 357999999999 99999999999999999999999886 6899999999999999998 999999999999999864
Q ss_pred CCCCCCCC------------------CCC-C--CchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC
Q 017846 255 AIAPVNPT------------------FLP-R--SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY 312 (365)
Q Consensus 255 ~~~~~~~~------------------~~~-~--~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~ 312 (365)
........ +.+ . .......+.++|||+|||..+++++|+++|++ || .|.+|.++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQK- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEESST-
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEEEeC-
Confidence 32111000 000 0 00011245789999999999999999999999 59 9999999775
Q ss_pred CCcceEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeecCCCCC
Q 017846 313 QHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRLVSPSKTPV 355 (365)
Q Consensus 313 ~~~kg~afV~F~~~~~A~~Al~-lng~~l~-g~~l~~V~~a~~~~ 355 (365)
.+|+|||+|.+.++|.+|+. |||..++ |++|+ |.|+++++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~-v~~a~~~i 198 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR-VSFSKSTI 198 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCC-EEEECCCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEE-EEeecccC
Confidence 36899999999999999999 9999999 99999 99998764
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=6e-30 Score=239.39 Aligned_cols=161 Identities=20% Similarity=0.300 Sum_probs=141.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~ 253 (365)
.+...++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+++|||||+|.+.++|.+|++++|..+.|++|.|.++.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence 34567899999999999999999999999999999999998778999999999999999999999999999999999862
Q ss_pred CCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC-CCcceEEEEEeCCHHHHHH
Q 017846 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY-QHSTRIAFVEFAMAESAIA 331 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~ 331 (365)
.++|||+|||..+++++|+++|++ || .|..|.++++. +.++|||||+|.+.++|.+
T Consensus 117 ---------------------~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 117 ---------------------ECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRFNTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp ---------------------SCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC-------CCEEEEECSSHHHHHH
T ss_pred ---------------------CCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHH
Confidence 479999999999999999999999 69 99999999877 6789999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCCCCCC
Q 017846 332 ALN-CSGAVLGSLPIRLVSPSKTPVRP 357 (365)
Q Consensus 332 Al~-lng~~l~g~~l~~V~~a~~~~~~ 357 (365)
|+. |||..+.|++|. |.++.+....
T Consensus 175 A~~~l~g~~~~g~~l~-v~~a~~~~~~ 200 (292)
T 2ghp_A 175 CVEKLNGLKIEGYTLV-TKVSNPLEKS 200 (292)
T ss_dssp HHHHHTTCEETTEECE-EEECCCC---
T ss_pred HHHHhCCCEeCCcEEE-EEECCCCccc
Confidence 999 999999999999 9998866443
No 20
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.4e-30 Score=223.05 Aligned_cols=160 Identities=14% Similarity=0.200 Sum_probs=137.3
Q ss_pred hhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
...++|||+|++++++|+++|++||+|.+|++++|+.++++ + |||||.|.+ .+ +|.. |++.
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~-~---------g~afV~f~~-~~------~a~~--A~~~ 64 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRS-R---------GFGFLSFEK-PS------SVDE--VVKT 64 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSC-C---------SCEEEEESS-TH------HHHH--HHHS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCc-c---------ceEEEEEcc-HH------HHHH--HHhc
Confidence 45678999999999999999999999999999999999988 8 999999999 55 5888 8886
Q ss_pred cCCCCCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHH
Q 017846 155 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGAR 232 (365)
Q Consensus 155 ~~~~~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~ 232 (365)
.....|+. +.+............++|||+|||.++++++|+++|++||.|.+++++.++ +.++|||||+|.+.++|.
T Consensus 65 ~~~~~g~~-i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 143 (167)
T 2cjk_A 65 QHILDGKV-IDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 143 (167)
T ss_dssp CCEETTEE-CCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHH
T ss_pred ccccCCeE-cccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 44447777 222222222333356789999999999999999999999999999999986 457999999999999999
Q ss_pred HHHHhCCceeCCeeEEEeeCCC
Q 017846 233 AALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 233 ~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
+|+++++..+.|++|.|.++.+
T Consensus 144 ~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 144 RVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HHHHCSEECSSSSCEEEEECCC
T ss_pred HHHhCCCEEeCCeEEEEeecCC
Confidence 9999999999999999999853
No 21
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=9.1e-29 Score=230.46 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=141.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
...++|||+|||+++|+++|+++|+.|| |.++.+ +.++|||||+|.+.++|.+|++ ++|..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-
Confidence 3568999999999999999999999999 999998 3456899999999999999998 99999999999999853
Q ss_pred CCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHH
Q 017846 255 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 332 (365)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~A 332 (365)
...+|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|
T Consensus 94 -------------------~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 153 (284)
T 3smz_A 94 -------------------TDALLCVANLPPSLTQQQFEELVRP-FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 153 (284)
T ss_dssp -------------------CSCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred -------------------CCCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHH
Confidence 2378999999999999999999999 5999999998875 67899999999999999999
Q ss_pred HH-hCCceeCCeeeEEeecCCCCCCC
Q 017846 333 LN-CSGAVLGSLPIRLVSPSKTPVRP 357 (365)
Q Consensus 333 l~-lng~~l~g~~l~~V~~a~~~~~~ 357 (365)
+. |||..++|++|. |.++.+...+
T Consensus 154 ~~~l~~~~~~g~~i~-v~~a~~~~~~ 178 (284)
T 3smz_A 154 KSDLLGKPLGPRTLY-VHWTDAGQLT 178 (284)
T ss_dssp HHHHTTCEETTEECE-EEECCGGGCC
T ss_pred HHHhCCCEeCCcEEE-EEECCCCCCC
Confidence 98 999999999999 9999876543
No 22
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-29 Score=214.20 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=134.3
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
..++|||++++++++|+++|++||+|.+|++++++.+. + + |||||.|.+ .+ +|.. |++.+
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-~-~---------g~afV~f~~-~~------~a~~--A~~~l 61 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNK-N-V---------NYAFVEYHQ-SH------DANI--ALQTL 61 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-C-C-E---------EEEEEEESS-HH------HHHH--HHHHH
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCC-C-C---------CEEEEEeCC-HH------HHHH--HHHHc
Confidence 35789999999999999999999999999999998755 4 5 999999999 55 6888 89888
Q ss_pred CCC--CCcc-cccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHH
Q 017846 156 GYS--QGKR-RMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEG 230 (365)
Q Consensus 156 ~~~--~gk~-~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~ 230 (365)
+.. .|++ .+..............++|||+|||.++++++|+++|++||.|.+++++.++. .++|||||+|.+.++
T Consensus 62 ~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 141 (166)
T 3md3_A 62 NGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 141 (166)
T ss_dssp TTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHH
T ss_pred CCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 776 6666 22222222223445567899999999999999999999999999999998864 469999999999999
Q ss_pred HHHHHH-hCCceeCCeeEEEeeCC
Q 017846 231 ARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 231 A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
|.+|+. |||..+.|++|+|.|++
T Consensus 142 A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 142 AQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHhCCCccCCcEEEEEecC
Confidence 999998 99999999999999985
No 23
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.4e-28 Score=226.96 Aligned_cols=154 Identities=27% Similarity=0.391 Sum_probs=140.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+. ++|..+.|++|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 445678999999999999999999999999999999765 5899999999999999998 99999999999999974
Q ss_pred CCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHH
Q 017846 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAA 332 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~A 332 (365)
. ..+|||+|||..+|+++|+++|++ ||.|.+|.|+.+. +.++|||||+|.+.++|.+|
T Consensus 95 ~--------------------~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 153 (261)
T 3sde_A 95 H--------------------GAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKA 153 (261)
T ss_dssp C--------------------SSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHH
T ss_pred c--------------------CCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHH
Confidence 2 368999999999999999999999 5999999999886 67899999999999999999
Q ss_pred HH-h-CCceeC---CeeeEEeecCCCC
Q 017846 333 LN-C-SGAVLG---SLPIRLVSPSKTP 354 (365)
Q Consensus 333 l~-l-ng~~l~---g~~l~~V~~a~~~ 354 (365)
+. | ++..+. +++|. |.++.+.
T Consensus 154 ~~~l~~~~~~~~~~~r~i~-v~~~~~~ 179 (261)
T 3sde_A 154 LERCGDGAFLLTTTPRPVI-VEPMEQF 179 (261)
T ss_dssp HHHHHHSCEESSSSCCBCE-EEECCCE
T ss_pred HHHhcCCeEEecCCCceEE-Eeecccc
Confidence 99 8 555555 99999 9998765
No 24
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.8e-29 Score=223.12 Aligned_cols=162 Identities=13% Similarity=0.248 Sum_probs=137.3
Q ss_pred hhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhh
Q 017846 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (365)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~ 153 (365)
....++|+|++++++++|+++|++||+|.+|+|++|+.++++ + |||||.|.+ .+ +|.. |++
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~-~---------g~afV~f~~-~~------~A~~--A~~ 88 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH-K---------GFAFVEYEV-PE------AAQL--ALE 88 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CC-C---------SEEEEEESS-HH------HHHH--HHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCcc-C---------ceEEEEeCC-HH------HHHH--HHH
Confidence 446788999999999999999999999999999999999988 8 999999999 55 6888 898
Q ss_pred hcCCC--CCcccccccCCcccc-------------CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--C
Q 017846 154 RNGYS--QGKRRMNCRTSNAQQ-------------DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--S 216 (365)
Q Consensus 154 ~~~~~--~gk~~~~~~~~~~~~-------------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~ 216 (365)
.++.. .|++ +++.++.. .....++|||+|||.++++++|+++|++||.|..++++.++. .
T Consensus 89 ~l~~~~~~g~~---l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~ 165 (216)
T 2qfj_A 89 QMNSVMLGGRN---IKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGK 165 (216)
T ss_dssp HHSSCCCC-CC---CEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCC
T ss_pred HccCCeeCCee---EEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 77665 6666 33332221 123557999999999999999999999999999999999863 4
Q ss_pred CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCC
Q 017846 217 VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (365)
Q Consensus 217 ~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~ 257 (365)
++|||||+|.+.++|.+|++ |||..|.|++|+|.++.....
T Consensus 166 ~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 166 HKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred cCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 69999999999999999999 999999999999999976543
No 25
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=3.2e-29 Score=214.73 Aligned_cols=158 Identities=19% Similarity=0.283 Sum_probs=138.9
Q ss_pred hhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
...++|||++++++++|+++|++||+|.+|++++++.++++ + |||||.|.+ .+ +|.. |++.
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~-~---------g~afV~f~~-~~------~A~~--a~~~ 64 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYS-Y---------GYAFVDFTS-EM------DSQR--AIKV 64 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEE-C---------SEEEEEESS-HH------HHHH--HHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCcc-c---------eEEEEEECC-HH------HHHH--HHHh
Confidence 35678999999999999999999999999999999999988 8 999999999 55 6888 8987
Q ss_pred cCCC--CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHH
Q 017846 155 NGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEG 230 (365)
Q Consensus 155 ~~~~--~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~ 230 (365)
++.. .|++ +.+....+.......++|||+|||.++++++|+++|++||.|..+++++++ +.++|||||+|.+.++
T Consensus 65 l~~~~~~g~~-l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 65 LNGITVRNKR-LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp HTTCEETTEE-CEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred cCCCEeCCcE-EEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 7776 6666 444444444555667899999999999999999999999999999999987 3468999999999999
Q ss_pred HHHHHH-hCCceeCC--eeEEEeeC
Q 017846 231 ARAALS-LAGTMLGF--YPVRVLPS 252 (365)
Q Consensus 231 A~~Al~-l~g~~i~g--~~l~V~~a 252 (365)
|.+|++ |+|..+.| ++|+|.+|
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999 99999987 99999885
No 26
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=4.3e-29 Score=219.42 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=135.7
Q ss_pred chhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhh
Q 017846 73 NHMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRR 152 (365)
Q Consensus 73 ~~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~ 152 (365)
.....++|+|+|++++++|+++|++||+|.+|+|++|+.++++ + |||||.|.+ .+ +|.. |+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~-~---------g~afV~f~~-~~------~A~~--A~ 72 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS-R---------GFGFVTYAT-VE------EVDA--AM 72 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE-E---------EEEEEEESS-HH------HHHH--HH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCc-c---------ceEEEEeCC-HH------HHHH--HH
Confidence 3456788999999999999999999999999999999999988 8 999999999 55 6888 88
Q ss_pred hhcCCC-CCcccccccCCcccc--------CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEE
Q 017846 153 KRNGYS-QGKRRMNCRTSNAQQ--------DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFA 221 (365)
Q Consensus 153 ~~~~~~-~gk~~~~~~~~~~~~--------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~a 221 (365)
+..+.. .|+. +.+.++.. .....++|||+|||+++++++|+++|++||.|..|+++.++. .++|||
T Consensus 73 ~~~~~~~~g~~---l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a 149 (196)
T 1l3k_A 73 NARPHKVDGRV---VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFA 149 (196)
T ss_dssp HTCSCEETTEE---CEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEE
T ss_pred hcCCCEECCEE---eeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceE
Confidence 774443 6666 33322221 122347899999999999999999999999999999999863 469999
Q ss_pred EEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 017846 222 FVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 222 FV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
||+|.+.++|.+|+..++..+.|+.|.|.++.+
T Consensus 150 fV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 150 FVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp EEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred EEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 999999999999999889999999999999864
No 27
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=5.6e-29 Score=214.40 Aligned_cols=158 Identities=17% Similarity=0.279 Sum_probs=132.3
Q ss_pred hhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCC--cccccCCCCCCCCCeEEeeecccCCCCcccccccchhhh
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANG--QIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRR 152 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~--~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~ 152 (365)
+..++|+|+|++++++|+++|++||+|.+|+|++++.++ ++ + |||||.|.+ .+ +|.. |+
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~-~---------g~afV~f~~-~~------~A~~--A~ 64 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQS-K---------GCCFVTFYT-RK------AALE--AQ 64 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEE-E---------EEEEEEESS-HH------HHHH--HH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCc-c---------eEEEEEECC-HH------HHHH--HH
Confidence 456889999999999999999999999999999999997 66 7 999999999 55 5888 88
Q ss_pred hhcCCC--C---CcccccccCCccc-cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEe
Q 017846 153 KRNGYS--Q---GKRRMNCRTSNAQ-QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEF 225 (365)
Q Consensus 153 ~~~~~~--~---gk~~~~~~~~~~~-~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F 225 (365)
+.++.. . +++ +.+...... ......++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|
T Consensus 65 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f 143 (175)
T 3nmr_A 65 NALHNMKVLPGMHHP-IQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 143 (175)
T ss_dssp HHHTTTCCCTTCSSC-CEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred HHhcCcEEccCCccc-eEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEE
Confidence 877765 2 222 222222222 1223567899999999999999999999999999999999864 4699999999
Q ss_pred CCHHHHHHHHH-hCCceeC---CeeEEEeeC
Q 017846 226 TDEEGARAALS-LAGTMLG---FYPVRVLPS 252 (365)
Q Consensus 226 ~~~~~A~~Al~-l~g~~i~---g~~l~V~~a 252 (365)
.+.++|.+|++ |||..+. |++|.|.|+
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 99999999998 9998776 499999997
No 28
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=9.1e-29 Score=211.28 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=136.6
Q ss_pred hhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhc
Q 017846 76 ERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRN 155 (365)
Q Consensus 76 ~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~ 155 (365)
..++|+|++++++++|+++|++||+|.++++++++.++++ + |||||.|.+ .+ +|.. |++.+
T Consensus 4 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~-~---------g~afV~f~~-~~------~A~~--a~~~l 64 (167)
T 1fxl_A 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS-L---------GYGFVNYID-PK------DAEK--AINTL 64 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCE-E---------EEEEEEESS-HH------HHHH--HHHHH
T ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcc-e---------eEEEEEECC-HH------HHHH--HHHHc
Confidence 5678999999999999999999999999999999999988 8 999999999 55 6888 99887
Q ss_pred CCC--CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHH
Q 017846 156 GYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGA 231 (365)
Q Consensus 156 ~~~--~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A 231 (365)
+.. .|++ +.+....+.......++|||+|||.++++++|+++|++||.|..++++.++. .++|||||+|.+.++|
T Consensus 65 ~~~~~~g~~-l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 65 NGLRLQTKT-IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp TTCEETTEE-CEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCccCCce-EEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 776 6666 3333333344445678899999999999999999999999999999999863 4699999999999999
Q ss_pred HHHHH-hCCceeCCe--eEEEeeC
Q 017846 232 RAALS-LAGTMLGFY--PVRVLPS 252 (365)
Q Consensus 232 ~~Al~-l~g~~i~g~--~l~V~~a 252 (365)
.+|++ |||..+.|+ +|+|.||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 99999 999999996 4888875
No 29
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=1.6e-26 Score=198.82 Aligned_cols=151 Identities=15% Similarity=0.204 Sum_probs=127.3
Q ss_pred hhhhcCCccccccHHHHHHHHhcc----C-------CcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCccc
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKL----N-------PMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTAN 143 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~----G-------~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~ 143 (365)
+..++|||++++++++|+++|++| | +|.++++.++ + |||||+|.+ .+
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-------~---------g~afV~f~~-~~----- 62 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------K---------NFAFLEFRS-VD----- 62 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-------T---------TEEEEEESS-HH-----
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-------C---------CEEEEEeCC-HH-----
Confidence 466789999999999999999999 6 6777776543 5 999999999 55
Q ss_pred ccccchhhhhhcCCC--CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCce
Q 017846 144 TNGHTTTRRKRNGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLR 219 (365)
Q Consensus 144 ~da~~~~a~~~~~~~--~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg 219 (365)
+|.. |+ .++.. .|++ +.+............++|||+|||+++++++|+++|++||.|..++++.++ +.++|
T Consensus 63 -~A~~--A~-~~~~~~~~g~~-i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 63 -ETTQ--AM-AFDGIIFQGQS-LKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp -HHHH--HG-GGTTCEETTEE-CEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred -HHHH--HH-HhCCcEecCce-eeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 6888 88 66665 6776 333333333344457889999999999999999999999999999999986 34699
Q ss_pred EEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 220 FAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 220 ~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
||||+|.+.++|.+|++ |||..+.|++|.|.+|
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999998 9999999999999997
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=6.7e-27 Score=208.15 Aligned_cols=150 Identities=9% Similarity=-0.001 Sum_probs=126.1
Q ss_pred hhhcCCcc-ccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 76 ERKMGESF-KDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 76 ~~~~g~~~-~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
..++|+|+ |++++++|+++|++||.|.+|+|+++ + + |||||+|.+ .+ +|+. |++.
T Consensus 6 ~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~-~---------g~afV~f~~-~~------~A~~--Ai~~ 61 (205)
T 3tyt_A 6 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----K-P---------GAAMVEMAD-GY------AVDR--AITH 61 (205)
T ss_dssp EEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----S-T---------TCEEEEESS-HH------HHHH--HHHH
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----C-C---------CEEEEEECC-HH------HHHH--HHHH
Confidence 45789999 99999999999999999999999986 2 5 999999999 55 6888 9998
Q ss_pred cCCC--CCcccccccCCcccc---------------------------------------CCCCCcEEEEcCCCCCCcHH
Q 017846 155 NGYS--QGKRRMNCRTSNAQQ---------------------------------------DEVIRRTVYVSDIDQQVTEE 193 (365)
Q Consensus 155 ~~~~--~gk~~~~~~~~~~~~---------------------------------------~~~~~~~lfV~nLp~~~te~ 193 (365)
+++. .|++ +++..+.. .....++|||+|||+++|++
T Consensus 62 lng~~~~g~~---l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~ 138 (205)
T 3tyt_A 62 LNNNFMFGQK---MNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEE 138 (205)
T ss_dssp HTTCEETTEE---CEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHH
T ss_pred hCCCEECCce---EEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHH
Confidence 8887 6766 22221110 01234579999999999999
Q ss_pred HHHHHhhhCCCe--eEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCe----eEEEeeC
Q 017846 194 QLATLFLTCGQV--VDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY----PVRVLPS 252 (365)
Q Consensus 194 ~L~~~F~~~G~i--~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~----~l~V~~a 252 (365)
+|+++|++||.| .+++++.+++.++|||||+|.+.++|.+||. |||..+.|+ ++.|+++
T Consensus 139 ~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 139 NFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999999 8999998876667999999999999999998 999999875 7888764
No 31
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=5.3e-27 Score=206.38 Aligned_cols=151 Identities=15% Similarity=0.188 Sum_probs=124.9
Q ss_pred hhhhcCCccccccHHHHHHHHhccC-----------CcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCccc
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKLN-----------PMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTAN 143 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G-----------~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~ 143 (365)
+..++|||+|++++++|+++|++|| .|.++.+ +++ + |||||.|.+ .+
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~-~---------g~afV~F~~-~~----- 62 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQD-K---------NFAFLEFRS-VD----- 62 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETT-T---------TEEEEEESC-SH-----
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCC-C---------CEEEEEeCC-HH-----
Confidence 4678899999999999999999995 4444444 334 5 999999999 66
Q ss_pred ccccchhhhhhcCCC--CCcccccccCCcccc----------------------CCCCCcEEEEcCCCCCCcHHHHHHHh
Q 017846 144 TNGHTTTRRKRNGYS--QGKRRMNCRTSNAQQ----------------------DEVIRRTVYVSDIDQQVTEEQLATLF 199 (365)
Q Consensus 144 ~da~~~~a~~~~~~~--~gk~~~~~~~~~~~~----------------------~~~~~~~lfV~nLp~~~te~~L~~~F 199 (365)
+|.. |+ .++.. .|++ +++.++.. .....++|||+|||.++++++|+++|
T Consensus 63 -~A~~--Al-~l~g~~~~g~~---i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 135 (198)
T 2yh0_A 63 -ETTQ--AM-AFDGIIFQGQS---LKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELL 135 (198)
T ss_dssp -HHHH--HG-GGTTEEETTEE---EEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHH
T ss_pred -HHHH--HH-HhcCCEEcCce---EEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 6888 88 66665 6666 33322221 12355889999999999999999999
Q ss_pred hhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 200 LTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 200 ~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
++||.|.+++++.++ +.++|||||+|.+.++|.+|++ |+|..+.|++|+|.++.+
T Consensus 136 ~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 136 TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp HTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999999999986 3469999999999999999999 999999999999999864
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=5.9e-27 Score=202.31 Aligned_cols=154 Identities=15% Similarity=0.172 Sum_probs=129.0
Q ss_pred hhhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhh
Q 017846 74 HMERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (365)
Q Consensus 74 ~~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~ 153 (365)
....++|||++++++++|+++|++||.|.. .++++..++++ + |||||.|.+ .+ +|.. |++
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~-~---------g~afV~f~~-~~------~a~~--A~~ 72 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTN-R---------KFGYVDFES-AE------DLEK--ALE 72 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETT-T---------TEEEEEESS-HH------HHHH--HHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCcc-c---------cEEEEEECC-HH------HHHH--HHh
Confidence 346788999999999999999999999988 56777788877 7 999999999 55 6888 885
Q ss_pred hcCCC--CCcccccccCCccc----cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCC
Q 017846 154 RNGYS--QGKRRMNCRTSNAQ----QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD 227 (365)
Q Consensus 154 ~~~~~--~gk~~~~~~~~~~~----~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~ 227 (365)
++.. .|++ +++.++. ......++|||+|||.++++++|+++|++||.|..+ ...+.++|||||+|.+
T Consensus 73 -l~g~~~~g~~---l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~ 145 (175)
T 1fje_B 73 -LTGLKVFGNE---IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKS 145 (175)
T ss_dssp -GGGEEETTEE---EEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSS
T ss_pred -cCCCEeCCeE---EEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECC
Confidence 6554 6776 4433333 233456789999999999999999999999988766 4445679999999999
Q ss_pred HHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 228 EEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 228 ~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
.++|.+|+. |+|..+.|++|+|.++.+
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 146 EADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 999999999 999999999999999853
No 33
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=8.3e-26 Score=210.18 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=127.6
Q ss_pred hhhhcCCccccccHHHHH----HHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchh
Q 017846 75 MERKMGESFKDCEMRDLV----DMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTT 150 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~----~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~ 150 (365)
+..++|+|+|++++++|+ ++|++||+|.+|++++ ++++ + |||||+|.+ .+ +|..
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~-~---------g~afV~f~~-~~------~a~~-- 67 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKM-R---------GQAFVIFKE-VS------SATN-- 67 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCc-c---------eEEEEEECC-HH------HHHH--
Confidence 466889999999999966 9999999999999987 5666 7 999999999 55 6888
Q ss_pred hhhhcCCC--CCcccccccCCcccc-------------------------------------------------------
Q 017846 151 RRKRNGYS--QGKRRMNCRTSNAQQ------------------------------------------------------- 173 (365)
Q Consensus 151 a~~~~~~~--~gk~~~~~~~~~~~~------------------------------------------------------- 173 (365)
|++.++.. .|++ +++.++..
T Consensus 68 A~~~l~g~~~~g~~---l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (282)
T 3pgw_A 68 ALRSMQGFPFYDKP---MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGM 144 (282)
T ss_pred HHHHhcCCeeCCcE---EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCC
Confidence 99888776 5655 22222111
Q ss_pred ----------------------------------------------------------CCCCCcEEEEcCCCCCCcHHHH
Q 017846 174 ----------------------------------------------------------DEVIRRTVYVSDIDQQVTEEQL 195 (365)
Q Consensus 174 ----------------------------------------------------------~~~~~~~lfV~nLp~~~te~~L 195 (365)
.....++|||+|||.++++++|
T Consensus 145 ~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 224 (282)
T 3pgw_A 145 PPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELML 224 (282)
T ss_pred CcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHH
Confidence 1113467999999999999999
Q ss_pred HHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeC-CeeEEEeeCC
Q 017846 196 ATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLPSK 253 (365)
Q Consensus 196 ~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~-g~~l~V~~a~ 253 (365)
+++|++||.|.+|+++.++ +|||||+|.+.++|.+|++ |||..+. |++|+|.|++
T Consensus 225 ~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 225 SMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999999999999999765 4899999999999999999 9999999 9999999985
No 34
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=1.1e-25 Score=198.35 Aligned_cols=149 Identities=18% Similarity=0.118 Sum_probs=126.4
Q ss_pred hhhcCCccc-cccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 76 ERKMGESFK-DCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 76 ~~~~g~~~~-~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
..++|||++ ++++++|+++|++||+|.+|++++++ + |||||.|.+ .+ +|.. |++.
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~------~---------g~afV~f~~-~~------~a~~--A~~~ 60 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK------K---------ENALVQMAD-GN------QAQL--AMSH 60 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC------S---------SCCEEECTT-TH------HHHH--HHHH
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC------C---------CEEEEEECC-HH------HHHH--HHHH
Confidence 567899999 99999999999999999999999985 3 999999999 56 6888 8987
Q ss_pred cCCC--CCcccccccCCccccC-------------------------------------CCCCcEEEEcCCCCCCcHHHH
Q 017846 155 NGYS--QGKRRMNCRTSNAQQD-------------------------------------EVIRRTVYVSDIDQQVTEEQL 195 (365)
Q Consensus 155 ~~~~--~gk~~~~~~~~~~~~~-------------------------------------~~~~~~lfV~nLp~~~te~~L 195 (365)
++.. .|++ +++.++... ....++|||+|||..+++++|
T Consensus 61 l~~~~~~g~~---l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 137 (198)
T 1qm9_A 61 LNGHKLHGKP---IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 137 (198)
T ss_dssp HTTCCCSSCC---CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHH
T ss_pred hCCCeecCeE---EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHH
Confidence 7765 6665 222221100 123678999999999999999
Q ss_pred HHHhhhCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeC-CeeEEEeeCCC
Q 017846 196 ATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLPSKT 254 (365)
Q Consensus 196 ~~~F~~~G-~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~-g~~l~V~~a~~ 254 (365)
+++|++|| .|.+++++.+. +|||||+|.+.++|.+|+. |+|..+. |++|+|.|+++
T Consensus 138 ~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 138 KVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred HHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 99999999 99999997643 6899999999999999999 9999999 99999999864
No 35
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=3.3e-25 Score=200.36 Aligned_cols=152 Identities=18% Similarity=0.100 Sum_probs=126.8
Q ss_pred hhhhcCCccc-cccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhh
Q 017846 75 MERKMGESFK-DCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRK 153 (365)
Q Consensus 75 ~~~~~g~~~~-~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~ 153 (365)
...++|+|++ ++++++|+++|++||+|.+|+|++++ + |||||+|.+ .+ +|.. |++
T Consensus 35 ~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~------~---------g~afV~F~~-~~------~A~~--Ai~ 90 (229)
T 2adc_A 35 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK------K---------ENALVQMAD-GN------QAQL--AMS 90 (229)
T ss_dssp SEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT------S---------CCEEEEESC-HH------HHHH--HHH
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC------C---------CEEEEEECC-HH------HHHH--HHH
Confidence 4678899999 99999999999999999999999985 3 999999999 55 6888 898
Q ss_pred hcCCC--CCcccccccCCccc-----c------------------------------CCCCCcEEEEcCCCCCCcHHHHH
Q 017846 154 RNGYS--QGKRRMNCRTSNAQ-----Q------------------------------DEVIRRTVYVSDIDQQVTEEQLA 196 (365)
Q Consensus 154 ~~~~~--~gk~~~~~~~~~~~-----~------------------------------~~~~~~~lfV~nLp~~~te~~L~ 196 (365)
.++.. .|++ +.+...... + .....++|||+|||.++++++|+
T Consensus 91 ~l~g~~~~g~~-l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 169 (229)
T 2adc_A 91 HLNGHKLHGKP-IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169 (229)
T ss_dssp HHTTCBCSSSB-CEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHH
T ss_pred HhCCCeECCeE-EEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHH
Confidence 77765 6665 222211111 0 01225789999999999999999
Q ss_pred HHhhhCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeC-CeeEEEeeCCC
Q 017846 197 TLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVLPSKT 254 (365)
Q Consensus 197 ~~F~~~G-~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~-g~~l~V~~a~~ 254 (365)
++|++|| .|.+++++.+ ++|||||+|.+.++|.+|++ |+|..+. |++|+|.|+++
T Consensus 170 ~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 170 VLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHHHTTSCCEEEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred HHHHHcCCCeeEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 9999999 9999999763 35899999999999999999 9999999 99999999864
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=1.4e-24 Score=200.09 Aligned_cols=148 Identities=22% Similarity=0.254 Sum_probs=127.7
Q ss_pred hhhhcCCccccccHHHHHHHHhccCCcceEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhh
Q 017846 75 MERKMGESFKDCEMRDLVDMLSKLNPMAAEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKR 154 (365)
Q Consensus 75 ~~~~~g~~~~~~~~~~L~~~Fs~~G~v~~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~ 154 (365)
...++|+|+|++++++|+++|++||+|.+|+++++ + |||||.|.+ .. +|.. |+..
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-------k---------g~afV~f~~-~~------~A~~--A~~~ 77 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-------R---------GFGFIRLES-RT------LAEI--AKAE 77 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-------T---------TEEEEECSS-HH------HHHH--HHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------C---------cEEEEEECC-HH------HHHH--HHHH
Confidence 35688999999999999999999999999999753 5 999999999 55 6888 8987
Q ss_pred cCCC--CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHH
Q 017846 155 NGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGA 231 (365)
Q Consensus 155 ~~~~--~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A 231 (365)
++.. .|++ +++.++. ...+|||+|||..+|+++|+++|+.||.|.+|+++.++ +.++|||||+|.+.++|
T Consensus 78 l~g~~i~g~~---l~v~~a~----~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 78 LDGTILKSRP---LRIRFAT----HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp HTTCEETTEE---CEEEECC----CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred cCCcEECCce---eEeeecc----cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 7776 7776 5544443 46789999999999999999999999999999999986 34699999999999999
Q ss_pred HHHHH-h-CCceeC---CeeEEEeeCCC
Q 017846 232 RAALS-L-AGTMLG---FYPVRVLPSKT 254 (365)
Q Consensus 232 ~~Al~-l-~g~~i~---g~~l~V~~a~~ 254 (365)
.+|+. | ++..+. +++|.|.++..
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred HHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 99998 8 565555 89999999864
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=3.4e-23 Score=176.28 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=111.5
Q ss_pred EEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCC
Q 017846 207 DCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDK 285 (365)
Q Consensus 207 ~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~ 285 (365)
+++|+.+..+++|||||+|.++++|++|++ +++.......+.+............ ..............+|||+|||.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG-SHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC-CCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc-ccccccccCCCCCCEEEEeCCCC
Confidence 577888888899999999999999999997 7654433333333222110000000 00001111134568999999999
Q ss_pred CCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCC
Q 017846 286 KVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPV 355 (365)
Q Consensus 286 ~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~ 355 (365)
.+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.++++..
T Consensus 81 ~~~~~~l~~~F~~-~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~~a~~~~ 151 (158)
T 2kn4_A 81 RTSPDTLRRVFEK-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR-VQMARYGR 151 (158)
T ss_dssp TCCHHHHHHHHHH-HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE-EEEECCSS
T ss_pred CCCHHHHHHHHHh-cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE-EEECCCCC
Confidence 9999999999999 5999999999885 6899999999999999999999 999999999999 99998763
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=4e-23 Score=166.75 Aligned_cols=109 Identities=20% Similarity=0.342 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~ 255 (365)
...+|||+|||+++++++|+++|++||.|.+|+|++|++++||||||+|.+.++|.+|++ |+|..+.|++|+|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 456899999999999999999999999999999999988889999999999999999998 9999999999999998643
Q ss_pred CCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHH
Q 017846 256 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGD 291 (365)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~ 291 (365)
.... ...........+|||+|||+.+|++.
T Consensus 84 ~~~~------~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KERE------AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------------
T ss_pred cccc------cccccccCCCCceEeCCCCCCccccc
Confidence 2111 11111233446899999999999863
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=1.9e-21 Score=164.19 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=114.4
Q ss_pred EEEecCCCCCceEEEEEeCCHHHHHHHHH-h-CCceeCCeeEEEeeCCCCCCCCC--CCCCCCCchhhcccccEEEeeCC
Q 017846 208 CRICGDPNSVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLPSKTAIAPVN--PTFLPRSEDEREMCSRTIYCTNI 283 (365)
Q Consensus 208 v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l-~g~~i~g~~l~V~~a~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nL 283 (365)
..+..+...-+|+++|+|.+.++|++|++ + ||..+.| +|.+.++........ ...............++|||+||
T Consensus 3 ~al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl 81 (150)
T 2i2y_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNL 81 (150)
T ss_dssp EEEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESC
T ss_pred eEeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCC
Confidence 34455545568999999999999999998 8 9999999 999998753211000 00001111222446789999999
Q ss_pred CCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCC
Q 017846 284 DKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPV 355 (365)
Q Consensus 284 p~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~ 355 (365)
|+.+++++|+++|++ ||.|.+|+++++ ++|||||+|.+.++|.+|+. |||..|.|++|+ |.|++++.
T Consensus 82 ~~~~t~~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~~a~~~~ 149 (150)
T 2i2y_A 82 GNNGNKTELERAFGY-YGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR-VELSNGEK 149 (150)
T ss_dssp CSCCSCHHHHHHHHH-HSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE-EEECCCCC
T ss_pred CCCCCHHHHHHHHHh-hCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE-EEEcCCCC
Confidence 999999999999999 599999999987 67899999999999999999 999999999999 99998763
No 40
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=4e-21 Score=163.46 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=101.2
Q ss_pred eEEecCCCCCCcccccCCCCCCCCCeEEeeecccCCCCcccccccchhhhhhcCCC---CCcccccccC-----------
Q 017846 103 AEFVPPSLANGQIFNFNPAFFGPNGFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS---QGKRRMNCRT----------- 168 (365)
Q Consensus 103 ~v~v~~d~~t~~s~~~~~~~~~~~GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~---~gk~~~~~~~----------- 168 (365)
+++|+++.. ++ + |||||+|.+ .+ +|++ |++.++.. .|...+..+.
T Consensus 2 ~~kl~ln~~--~~-~---------G~~fV~f~~-~~------~A~~--al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (158)
T 2kn4_A 2 QYKLILNGK--TL-K---------GETTTEAVD-AA------TAEK--VFKQYANDNGVDGEWTYDDATKTFTVTEGSHH 60 (158)
T ss_dssp EEEEEEECS--SC-E---------EEEEEECSS-HH------HHHH--HHHHHHHHHTCCCEEEEETTTTEEEEECCCCC
T ss_pred cEEEEecCc--cc-c---------chhHHHHHH-HH------hHHH--HHHhhcccCCCCCcccccCccccccccccccc
Confidence 456666655 34 6 999999999 55 5777 77665421 1211111100
Q ss_pred CccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCe
Q 017846 169 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFY 245 (365)
Q Consensus 169 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~ 245 (365)
..........++|||+|||+++++++|+++|++||.|.+|+|+.|+ +.++|||||+|.+.++|.+|++ |||..+.|+
T Consensus 61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 0111223446789999999999999999999999999999999986 4579999999999999999998 999999999
Q ss_pred eEEEeeCCCC
Q 017846 246 PVRVLPSKTA 255 (365)
Q Consensus 246 ~l~V~~a~~~ 255 (365)
+|+|.+++..
T Consensus 141 ~l~v~~a~~~ 150 (158)
T 2kn4_A 141 ELRVQMARYG 150 (158)
T ss_dssp EEEEEEECCS
T ss_pred EEEEEECCCC
Confidence 9999999754
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=141.75 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
..++|||+|||+++|+++|+++|++||.|.+|+|++|+. .++|||||+|.++++|.+|++ |||..+.|++|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 456899999999999999999999999999999999874 469999999999999999998 99999999999999986
No 42
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=139.51 Aligned_cols=78 Identities=29% Similarity=0.458 Sum_probs=73.6
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
+.+|||+|||+.+|+++|+++|++ ||.|.+|+|++++ +.++|||||+|.+.++|.+|++ |||..|.|++|+ |+|+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~-V~~A 96 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK-VSYA 96 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE-EEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE-EEEe
Confidence 578999999999999999999999 6999999999886 6899999999999999999999 999999999999 9999
Q ss_pred CCC
Q 017846 352 KTP 354 (365)
Q Consensus 352 ~~~ 354 (365)
+|.
T Consensus 97 kPS 99 (99)
T 4fxv_A 97 RPS 99 (99)
T ss_dssp CBC
T ss_pred eCC
Confidence 763
No 43
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=4.4e-19 Score=149.58 Aligned_cols=114 Identities=23% Similarity=0.244 Sum_probs=93.1
Q ss_pred CeEEeeecccCCCCcccccccchhhhhhc-CCC--CCcccccccCC----------------ccccCCCCCcEEEEcCCC
Q 017846 127 GFGYTNNFIMHTDGTANTNGHTTTRRKRN-GYS--QGKRRMNCRTS----------------NAQQDEVIRRTVYVSDID 187 (365)
Q Consensus 127 GfgFV~f~~~~~~~~~~~da~~~~a~~~~-~~~--~gk~~~~~~~~----------------~~~~~~~~~~~lfV~nLp 187 (365)
|+++|+|.+ .+ +|++ |++.+ +.. .| + +.+... .........++|||+|||
T Consensus 14 G~~~ve~~~-~~------~A~~--a~~~~~ng~~~~G-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 82 (150)
T 2i2y_A 14 GETTTEAVD-AA------TAEK--VFKQYANDNGVDG-E-WTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLG 82 (150)
T ss_dssp EEEEEECSS-HH------HHTT--THHHHHHHHTCCC-E-EEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCC
T ss_pred ccceeeecC-HH------HHHH--HHHHHhcCCCCCC-c-eecccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 999999999 55 5777 88766 443 45 3 112111 112233456899999999
Q ss_pred CCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 188 QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 188 ~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
+++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|++ |||..+.|++|+|.++++
T Consensus 83 ~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 83 NNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 99999999999999999999999987 57999999999999999998 999999999999999864
No 44
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-18 Score=133.47 Aligned_cols=82 Identities=30% Similarity=0.431 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
.....++|||+|||+++++++|+++|++||.|.+|+|+.++.+++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 345678999999999999999999999999999999999988889999999999999999998 9999999999999998
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
+..
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 753
No 45
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=136.71 Aligned_cols=99 Identities=24% Similarity=0.290 Sum_probs=82.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 257 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~ 257 (365)
++|||+|||+++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.+++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999988 67999999999999999999 999999999999999976443
Q ss_pred CCCCCCCCCCchhhcccccEEEeeCCC
Q 017846 258 PVNPTFLPRSEDEREMCSRTIYCTNID 284 (365)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp 284 (365)
.......+ .+.....+|||+||+
T Consensus 78 ~~~~~~~~----~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 RSRFDRPP----ARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCCSCC----CSCCCCSCCCSCCCC
T ss_pred cccCCCCC----ccccCCCceecCCCC
Confidence 22111111 112345789999997
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=136.45 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
...++|||+|||+++++++|+++|++||.|.+|+|++|+. .++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3568999999999999999999999999999999999985 479999999999999999998 9999999999999998
Q ss_pred C
Q 017846 253 K 253 (365)
Q Consensus 253 ~ 253 (365)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 5
No 47
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=131.52 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
.....++|||+|||+++++++|+++|++||.|.+|+|+.++.+++|||||+|.+.++|.+|++ |++..|.|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345678999999999999999999999999999999999987789999999999999999998 9999999999999998
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
...
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 754
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=134.40 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhhCC-CeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-h-CCceeCCeeEEEeeC
Q 017846 178 RRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLPS 252 (365)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l-~g~~i~g~~l~V~~a 252 (365)
+.+|||+|||+++|+++|+++|++|| .|.+|+|++|+. .+||||||+|.++++|.+|++ + ++..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 899999999874 479999999999999999998 6 566799999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
.+
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=4.2e-18 Score=137.18 Aligned_cols=79 Identities=24% Similarity=0.346 Sum_probs=74.5
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKT 353 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~ 353 (365)
..+|||+|||+.+++++|+++|++ ||.|.+|+|+++.+.++|||||+|.+.++|.+|++ |||..|.|++|+ |.++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~-V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF-VGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE-EEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE-EEECCC
Confidence 468999999999999999999999 59999999999988899999999999999999999 999999999999 999876
Q ss_pred CC
Q 017846 354 PV 355 (365)
Q Consensus 354 ~~ 355 (365)
..
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 50
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.4e-18 Score=144.01 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=78.1
Q ss_pred CeEEeeecccCCCCcccccccchhhhhhcCCC--CCcccccccCCccccCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCC
Q 017846 127 GFGYTNNFIMHTDGTANTNGHTTTRRKRNGYS--QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQ 204 (365)
Q Consensus 127 GfgFV~f~~~~~~~~~~~da~~~~a~~~~~~~--~gk~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 204 (365)
-|.|..|.+.. -+.. |+..++.. .|+.. .....+.......++|||+|||+++++++|+++|++||.
T Consensus 5 ~~~~~~~~~~~-------~~~~--a~~~~~g~~~~g~~~--~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 73 (135)
T 2lea_A 5 HHHHHHSSGLV-------PRGS--HMASMTGGQQMGRGS--MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGR 73 (135)
T ss_dssp -----------------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSC
T ss_pred ccccccccCCC-------chhh--hhhhccCCCCCCCCC--CCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 45666666622 3566 77777665 23321 222333344556778999999999999999999999999
Q ss_pred eeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCC
Q 017846 205 VVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 205 i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~ 255 (365)
|..|+|+.++. .++|||||+|.+.++|.+|++ |++..+.|++|+|.+++..
T Consensus 74 i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 74 VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp CSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999998863 479999999999999999998 9999999999999999754
No 51
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=1.5e-18 Score=139.48 Aligned_cols=103 Identities=22% Similarity=0.337 Sum_probs=90.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
+...++|||+|||+++++++|+++|++||.|.+|+++.+. .++|||||+|.+.++|.+|+. |||..+.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4467899999999999999999999999999999999874 458999999999999999999 99999999999999985
Q ss_pred CCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhhcCC
Q 017846 254 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG 301 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G 301 (365)
+.. . . ++++...++++|.++|+++ |
T Consensus 84 ~~~--------------~----~----~~~~~~~~~~~l~~~~~~~-g 108 (115)
T 3lqv_A 84 ANR--------------A----F----QKMDTKKKEEQLKLLKEKY-G 108 (115)
T ss_dssp HHH--------------H----T----TTSCHHHHHHHHHHHHHHH-C
T ss_pred CCh--------------h----h----hhhhHhHhHHHHHHHHHHh-C
Confidence 210 0 0 5678888999999999994 7
No 52
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=130.30 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 176 VIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
...++|||+|||+++++++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|.+|++ |||..+.|++|+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356789999999999999999 99999999999999999877 8999999999999999999 99999999999999
Q ss_pred eCCCC
Q 017846 251 PSKTA 255 (365)
Q Consensus 251 ~a~~~ 255 (365)
+++..
T Consensus 86 ~a~~~ 90 (96)
T 2dgx_A 86 LATGA 90 (96)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 99643
No 53
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=2.4e-17 Score=132.45 Aligned_cols=85 Identities=24% Similarity=0.380 Sum_probs=77.1
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
......++|||+|||+++++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|++ |++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3455678999999999999999999999999999999999863 469999999999999999998 9999999999999
Q ss_pred eeCCCCCC
Q 017846 250 LPSKTAIA 257 (365)
Q Consensus 250 ~~a~~~~~ 257 (365)
.+++....
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99976543
No 54
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-18 Score=134.86 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeC
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a 252 (365)
.....++|||+|||+++|+++|+++|++||.|.+|+|++|+ +.++|||||+|.++++|.+|+.+++..+.|++|.|.++
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34467899999999999999999999999999999999987 45799999999999999999999999999999999986
Q ss_pred C
Q 017846 253 K 253 (365)
Q Consensus 253 ~ 253 (365)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=132.42 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCC--eeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCc----eeCCee
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQ--VVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGT----MLGFYP 246 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~--i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~----~i~g~~ 246 (365)
..-.+|||+|||+++|+++|+++|++||. |.+|++++|+. .+||||||+|.++++|.+|++ |||. .+.|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34568999999999999999999999995 67899999984 479999999999999999998 9987 489999
Q ss_pred EEEeeCCC
Q 017846 247 VRVLPSKT 254 (365)
Q Consensus 247 l~V~~a~~ 254 (365)
|.|.+|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999863
No 56
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=132.59 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=71.9
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-h-CCceeCCeeeEEee
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-C-SGAVLGSLPIRLVS 349 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-l-ng~~l~g~~l~~V~ 349 (365)
+++|||+|||+.+|+++|+++|++ || .|.+|+|++++ +.++|||||+|.+.++|.+|++ + ++..++|++|+ |.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~-V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS-MH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE-EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE-EE
Confidence 378999999999999999999999 59 89999999886 6899999999999999999998 6 56789999999 99
Q ss_pred cCCCCC
Q 017846 350 PSKTPV 355 (365)
Q Consensus 350 ~a~~~~ 355 (365)
++++..
T Consensus 79 ~a~~~~ 84 (91)
T 2lxi_A 79 YSDPKP 84 (91)
T ss_dssp CCCSCC
T ss_pred EcCCCC
Confidence 998653
No 57
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=129.99 Aligned_cols=89 Identities=22% Similarity=0.368 Sum_probs=80.8
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-V~ 83 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH-VL 83 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE-EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE-EE
Confidence 35689999999999999999999999 6999999999886 6789999999999999999998 999999999999 99
Q ss_pred cCCCCCCCCCCCCC
Q 017846 350 PSKTPVRPRAPRPP 363 (365)
Q Consensus 350 ~a~~~~~~r~~~~~ 363 (365)
++++...+....|+
T Consensus 84 ~a~~~~~~~~~~~~ 97 (99)
T 1whw_A 84 PSTIKKEASQSGPS 97 (99)
T ss_dssp ECCCCSTTCCCCCC
T ss_pred EcCCCcccccCCCC
Confidence 99998766655554
No 58
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=1.9e-18 Score=132.94 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCC--CeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
.+|||+|||+++++++|+++|++|| .|.+++++.|+. .++|||||+|.+.++|.+|++ |||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999999864 479999999999999999998 99999999999999986
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=127.19 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
..++|||+|||.++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ |+|..+.|++|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 567899999999999999999999999999999999863 469999999999999999998 99999999999999986
Q ss_pred C
Q 017846 254 T 254 (365)
Q Consensus 254 ~ 254 (365)
+
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 60
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=130.33 Aligned_cols=81 Identities=27% Similarity=0.414 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-----~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
...++|||+|||+++++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|++ |++..+.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3567899999999999999999999999999999998765 468999999999999999999 9999999999999
Q ss_pred eeCCCCC
Q 017846 250 LPSKTAI 256 (365)
Q Consensus 250 ~~a~~~~ 256 (365)
.+++...
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997543
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.3e-17 Score=128.34 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+++++++|+++|++||.|..++++.+.+.++|||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34678999999999999999999999999999999999777789999999999999999998 99999999999999987
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 62
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=130.76 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=76.1
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
......++|||+|||+++++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|++ |++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3455678999999999999999999999999999999999864 469999999999999999999 9999999999999
Q ss_pred eeCCCC
Q 017846 250 LPSKTA 255 (365)
Q Consensus 250 ~~a~~~ 255 (365)
.++++.
T Consensus 90 ~~a~~~ 95 (103)
T 2cq0_A 90 EWAKPS 95 (103)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998754
No 63
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=3.3e-18 Score=141.85 Aligned_cols=122 Identities=18% Similarity=0.203 Sum_probs=78.2
Q ss_pred EEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhhh
Q 017846 220 FAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 298 (365)
Q Consensus 220 ~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 298 (365)
+.|++|++...+..|++ ++|....|+. .+.+.. .+ ......++|||+|||..+++++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~----------~~----~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 70 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR----------PP----PDVEGMTSLKVDNLTYRTSPDTLRRVFEK 70 (135)
T ss_dssp ------------------------------CCSCC----------SC----SSGGGCCCEEEECCCSSCHHHHHHHHHGG
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCC----------CC----CCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 67888899999999998 8886665543 112211 11 11234689999999999999999999999
Q ss_pred cCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCCC
Q 017846 299 VCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPVRPR 358 (365)
Q Consensus 299 ~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~~~r 358 (365)
||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.|+++...++
T Consensus 71 -~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~-V~~a~~~~~~~ 131 (135)
T 2lea_A 71 -YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR-VQMARYGRPPD 131 (135)
T ss_dssp -GSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE-EEECCCCCCCT
T ss_pred -cCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE-EEECCCCCCCc
Confidence 5999999999875 6899999999999999999999 999999999999 99998764443
No 64
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=129.19 Aligned_cols=84 Identities=21% Similarity=0.331 Sum_probs=76.9
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC-----CcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRL 347 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~-----~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~ 347 (365)
+.++|||+|||..+++++|+++|++ ||.|..|.|+++.. .++|||||+|.+.++|.+|+. |||..|.|++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~- 81 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE- 81 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE-
Confidence 4689999999999999999999999 69999999998753 689999999999999999999 999999999999
Q ss_pred eecCCCCCCCCC
Q 017846 348 VSPSKTPVRPRA 359 (365)
Q Consensus 348 V~~a~~~~~~r~ 359 (365)
|.++++...++.
T Consensus 82 V~~a~~~~~~~~ 93 (98)
T 2cpf_A 82 VRISERATKPAS 93 (98)
T ss_dssp EECSSCSSCCCC
T ss_pred EEEccCCCCCCC
Confidence 999998765554
No 65
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=132.55 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=74.4
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
.+.++|||+|||+.+++++|+++|++ ||.|.+|+|++|+ ++++|||||+|.+.++|.+|++ |||..|.|++|+ |.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~-V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH-AQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE-EE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE-EE
Confidence 34689999999999999999999999 6999999999886 6899999999999999999999 999999999999 99
Q ss_pred cCCCC
Q 017846 350 PSKTP 354 (365)
Q Consensus 350 ~a~~~ 354 (365)
++...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 98643
No 66
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.4e-17 Score=126.19 Aligned_cols=79 Identities=30% Similarity=0.414 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++||.|.+++++.++.+ ++|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999988643 69999999999999999997 999999999999999
Q ss_pred CC
Q 017846 252 SK 253 (365)
Q Consensus 252 a~ 253 (365)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 67
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=131.89 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hC--CceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~--g~~i~g~~l~V~~ 251 (365)
+...++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++ ++ +..+.|++|+|.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 446789999999999999999999999999999999986 5899999999999999998 76 4789999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
++..
T Consensus 89 A~~~ 92 (105)
T 1sjq_A 89 SNHK 92 (105)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 8643
No 68
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=2.1e-17 Score=125.98 Aligned_cols=80 Identities=24% Similarity=0.367 Sum_probs=73.1
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEe
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~ 250 (365)
..+...++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|+++++..+.|++|+|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455778999999999999999999999999999999999874 46999999999999999999988899999999999
Q ss_pred eC
Q 017846 251 PS 252 (365)
Q Consensus 251 ~a 252 (365)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 69
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=133.61 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=76.6
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
......++|||+|||.++++++|+++|++||.|.+|+++.++++++|||||+|.+.++|.+|++ |+|..+.|++|+|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4455678999999999999999999999999999999999987789999999999999999999 999999999999999
Q ss_pred CCC
Q 017846 252 SKT 254 (365)
Q Consensus 252 a~~ 254 (365)
++.
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 70
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.2e-17 Score=128.36 Aligned_cols=86 Identities=19% Similarity=0.292 Sum_probs=78.9
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
....++|||+|||..+++++|+++|++ ||.|..|.|+.+.+.++|||||+|.+.++|.+|+. |||..|.|++|+ |.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE-VNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE-EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE-EEE
Confidence 345689999999999999999999999 69999999999887799999999999999999999 999999999999 999
Q ss_pred CCCCCCCCC
Q 017846 351 SKTPVRPRA 359 (365)
Q Consensus 351 a~~~~~~r~ 359 (365)
+++...+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cq3_A 90 ATARVMTNS 98 (103)
T ss_dssp CCSSCCCCC
T ss_pred cccCCCCCC
Confidence 988755543
No 71
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=128.71 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||.++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|+++++..+.|++|+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44678999999999999999999999999999999999874 4699999999999999999999999999999999998
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
.+.
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 72
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=2.9e-17 Score=123.89 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=71.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
.+|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ |+|..+.|++|+|.++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999999999999999999864 469999999999999999999 999999999999999863
No 73
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=128.65 Aligned_cols=81 Identities=26% Similarity=0.320 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|.+|++ |+|..+.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999987 3479999999999999999997 999999999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
++..
T Consensus 85 a~~~ 88 (99)
T 1whw_A 85 STIK 88 (99)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 74
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=130.29 Aligned_cols=81 Identities=21% Similarity=0.396 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+++++++|+++|++||.|..|+|+.+.+.++|||||+|.+.++|.+|++ |++..+.|++|.|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 44678899999999999999999999999999999999855679999999999999999998 99999999999999987
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
..
T Consensus 92 ~~ 93 (103)
T 2d9p_A 92 RK 93 (103)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 75
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=127.19 Aligned_cols=80 Identities=28% Similarity=0.403 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
...++|||+|||.++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3578999999999999999999999999999999999874 479999999999999999999 9999999999999999
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
...
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 754
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-17 Score=128.69 Aligned_cols=85 Identities=25% Similarity=0.354 Sum_probs=78.4
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|+++.+.++|||||+|.+.++|.+|+. |||..|.|++|+ |.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK-VNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE-EEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE-EEEC
Confidence 45689999999999999999999999 59999999999987789999999999999999999 999999999999 9999
Q ss_pred CCCCCCCC
Q 017846 352 KTPVRPRA 359 (365)
Q Consensus 352 ~~~~~~r~ 359 (365)
+++...+.
T Consensus 91 ~~~~~~~~ 98 (103)
T 2cqi_A 91 TTPSSQKS 98 (103)
T ss_dssp CCTTCCCC
T ss_pred CCCccccc
Confidence 98755543
No 77
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=128.45 Aligned_cols=80 Identities=34% Similarity=0.507 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
.....++|||+|||+.+++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 344678999999999999999999999999999999999874 469999999999999999999 999999999999999
Q ss_pred CC
Q 017846 252 SK 253 (365)
Q Consensus 252 a~ 253 (365)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 78
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.2e-17 Score=143.02 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=75.7
Q ss_pred EEeCCHHHHHHHHH-hCCceeC--CeeEEEeeCCCCCCCCCCCC---C---CCCchhhcccccEEEeeCCCCCCCHHHHH
Q 017846 223 VEFTDEEGARAALS-LAGTMLG--FYPVRVLPSKTAIAPVNPTF---L---PRSEDEREMCSRTIYCTNIDKKVTQGDIK 293 (365)
Q Consensus 223 V~F~~~~~A~~Al~-l~g~~i~--g~~l~V~~a~~~~~~~~~~~---~---~~~~~~~~~~~~~l~V~nLp~~~te~~L~ 293 (365)
.+|++.++|+.|+. +++.... |+.+.+.++.......-... . ...........++|||.|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 68999999999998 8887665 66666665432110000000 0 00011123456899999999999999999
Q ss_pred HHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCCC
Q 017846 294 LFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPVRPR 358 (365)
Q Consensus 294 ~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~~~r 358 (365)
++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+||. |||..|.|++|. |.|+++...++
T Consensus 91 ~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~-V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ-VDWCFVKGPKR 156 (165)
T ss_dssp HHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE-EEESEECC---
T ss_pred HHhhc-CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE-EEEecCCCCCC
Confidence 99999 5999999999875 6789999999999999999999 999999999999 99998765444
No 79
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=128.42 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||+++++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3456789999999999999999999999999999999988 3468999999999999999998 9999999999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
++
T Consensus 94 ~~ 95 (100)
T 2do4_A 94 NS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 80
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=127.80 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++||.|..|+++.++. .++|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 44678899999999999999999999999999999999874 469999999999999999998 999999999999999
Q ss_pred CC
Q 017846 252 SK 253 (365)
Q Consensus 252 a~ 253 (365)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 81
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=126.64 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=78.0
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
.+.++|||+|||..+++++|+++|++ ||.|..|.+++++ +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR-VG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCE-EE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEE-EE
Confidence 35689999999999999999999999 6999999999885 6789999999999999999999 999999999999 99
Q ss_pred cCCCCCCCCC
Q 017846 350 PSKTPVRPRA 359 (365)
Q Consensus 350 ~a~~~~~~r~ 359 (365)
++++......
T Consensus 81 ~a~~~~~~~~ 90 (95)
T 2dnz_A 81 HVTERLDGGS 90 (95)
T ss_dssp ESSCCCCCCC
T ss_pred EcccccCCCC
Confidence 9988765544
No 82
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-17 Score=126.51 Aligned_cols=80 Identities=25% Similarity=0.267 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
.+...++|||+|||+++++++|+++|++||.|..|+++.++. .++|||||+|.+.++|.+|++ |+|..+.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678899999999999999999999999999999999875 469999999999999999999 99999999999999
Q ss_pred eCC
Q 017846 251 PSK 253 (365)
Q Consensus 251 ~a~ 253 (365)
+++
T Consensus 91 ~a~ 93 (95)
T 2cqc_A 91 GPS 93 (95)
T ss_dssp CCS
T ss_pred ecC
Confidence 986
No 83
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=4.9e-17 Score=128.41 Aligned_cols=81 Identities=27% Similarity=0.389 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hCCceeCC---eeEEE
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGF---YPVRV 249 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g---~~l~V 249 (365)
....++|||+|||.++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++ |++..+.| ++|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34578999999999999999999999999999999999873 469999999999999999998 99999988 99999
Q ss_pred eeCCCC
Q 017846 250 LPSKTA 255 (365)
Q Consensus 250 ~~a~~~ 255 (365)
.+++..
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 999753
No 84
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=4.7e-17 Score=130.78 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=78.0
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
....++|||+|||..+++++|+++|++ ||.|..|+|+++. +.++|||||+|.+.++|.+|++ |||..|.|++|+ |
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-V 99 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK-V 99 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE-E
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE-E
Confidence 345689999999999999999999999 5999999999886 6789999999999999999998 999999999999 9
Q ss_pred ecCCCCCCCCC
Q 017846 349 SPSKTPVRPRA 359 (365)
Q Consensus 349 ~~a~~~~~~r~ 359 (365)
.|+++....++
T Consensus 100 ~~a~~~~~~~~ 110 (115)
T 2cpz_A 100 QLKRSKNDSKS 110 (115)
T ss_dssp ECCCCSCCCCC
T ss_pred EEcCCCCcCCC
Confidence 99988755443
No 85
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=3.8e-17 Score=131.35 Aligned_cols=81 Identities=20% Similarity=0.402 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++ ||+..|.|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999874 469999999999999999997 999999999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
+++.
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8754
No 86
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=127.79 Aligned_cols=80 Identities=21% Similarity=0.420 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEE-EEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-RICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
...++|||+|||+++++++|+++|++||.|..+ +|+.++. .++|||||+|.++++|.+|++ |++..+.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999853 469999999999999999999 999999999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
+...
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8643
No 87
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-17 Score=129.82 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecC-C--CCCceEEEEEeCCHHHHHHHHH-h-CCceeCCeeEE
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD-P--NSVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVR 248 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d-~--~~~kg~aFV~F~~~~~A~~Al~-l-~g~~i~g~~l~ 248 (365)
.....++|||+|||+.+++++|+++|++||.|..|+|+.+ + +.++|||||+|.+.++|.+|++ | |+..+.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3446788999999999999999999999999999999998 3 4579999999999999999998 9 99999999999
Q ss_pred EeeCCCC
Q 017846 249 VLPSKTA 255 (365)
Q Consensus 249 V~~a~~~ 255 (365)
|.+++..
T Consensus 91 v~~a~~~ 97 (107)
T 2cph_A 91 LEWADSE 97 (107)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9999653
No 88
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=6.6e-18 Score=131.28 Aligned_cols=79 Identities=24% Similarity=0.263 Sum_probs=71.9
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCc--eEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCc----eeCCee
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGE--VQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGA----VLGSLP 344 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~--I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~----~l~g~~ 344 (365)
...+|||+|||+.+|+++|+++|++ ||. |.+|++++|+ +.++|||||+|.+.++|.+|++ |||. .|+|++
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 4579999999999999999999999 695 6799999987 6899999999999999999999 9996 589999
Q ss_pred eEEeecCCCC
Q 017846 345 IRLVSPSKTP 354 (365)
Q Consensus 345 l~~V~~a~~~ 354 (365)
|. |+||+..
T Consensus 87 i~-V~~Akss 95 (95)
T 2lkz_A 87 IG-VDFAKSA 95 (95)
T ss_dssp EE-EEECCCC
T ss_pred EE-EEEccCC
Confidence 99 9999863
No 89
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=3.1e-17 Score=127.53 Aligned_cols=77 Identities=32% Similarity=0.457 Sum_probs=72.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
.++|||+|||.++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |+|..+.|+.|+|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999864 469999999999999999998 999999999999999864
No 90
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=129.77 Aligned_cols=86 Identities=26% Similarity=0.376 Sum_probs=78.3
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
.+.++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|++ |||..|.|++|+ |.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-V~ 87 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR-VN 87 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE-EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE-EE
Confidence 35689999999999999999999999 6999999999875 5789999999999999999999 999999999999 99
Q ss_pred cCCCCCCCCCC
Q 017846 350 PSKTPVRPRAP 360 (365)
Q Consensus 350 ~a~~~~~~r~~ 360 (365)
++++...++..
T Consensus 88 ~a~~~~~~~~~ 98 (102)
T 2cqb_A 88 LAKPMRIKESG 98 (102)
T ss_dssp ECCCCCCCCCC
T ss_pred eCCCCCCCCCC
Confidence 99988655543
No 91
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.4e-17 Score=128.24 Aligned_cols=85 Identities=26% Similarity=0.337 Sum_probs=77.7
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
....++|||+|||..+++++|+++|++ ||.|..|.|++++ +.++|||||+|.+.++|.+|+. |||..|.|++|+ |
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-v 89 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN-V 89 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE-E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE-E
Confidence 345689999999999999999999999 6999999999885 6889999999999999999999 999999999999 9
Q ss_pred ecCCCCCCCC
Q 017846 349 SPSKTPVRPR 358 (365)
Q Consensus 349 ~~a~~~~~~r 358 (365)
.++++...+.
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9998875443
No 92
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=130.12 Aligned_cols=82 Identities=27% Similarity=0.341 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
.....++|||+|||+++++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|++ ||+..+.|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999999874 469999999999999999999 99999999999999
Q ss_pred eCCCC
Q 017846 251 PSKTA 255 (365)
Q Consensus 251 ~a~~~ 255 (365)
+++..
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 99753
No 93
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=128.64 Aligned_cols=85 Identities=18% Similarity=0.344 Sum_probs=78.1
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
....++|||+|||..+++++|+++|++ ||.|..|.|+.+.+.++|||||+|.+.++|.+|+. |||..|.|++|+ |.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY-VAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE-EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE-EEE
Confidence 345689999999999999999999999 69999999998877889999999999999999999 999999999999 999
Q ss_pred CCCCCCCC
Q 017846 351 SKTPVRPR 358 (365)
Q Consensus 351 a~~~~~~r 358 (365)
+++...++
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98875444
No 94
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=129.00 Aligned_cols=81 Identities=30% Similarity=0.396 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34678899999999999999999999999999999999864 469999999999999999998 999999999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
+++.
T Consensus 89 a~~~ 92 (102)
T 2cqb_A 89 AKPM 92 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 95
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=3.6e-17 Score=125.93 Aligned_cols=84 Identities=23% Similarity=0.237 Sum_probs=77.6
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...++|||+|||..+++++|+++|++ ||.|..|.+.++.+.++|||||+|.+.++|.+|+. |||..|.|++|+ |.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~-v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID-VRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC-CEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE-EEEc
Confidence 34689999999999999999999999 69999999998878899999999999999999999 999999999999 9999
Q ss_pred CCCCCCC
Q 017846 352 KTPVRPR 358 (365)
Q Consensus 352 ~~~~~~r 358 (365)
+++..++
T Consensus 84 ~~~~~~~ 90 (92)
T 2dgv_A 84 RNASGPS 90 (92)
T ss_dssp SCCSSCC
T ss_pred CCCCCCC
Confidence 8875543
No 96
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=128.96 Aligned_cols=83 Identities=33% Similarity=0.419 Sum_probs=75.9
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
......++|||+|||+++++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|++ |++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445678999999999999999999999999999999999873 479999999999999999999 9999999999999
Q ss_pred eeCCCC
Q 017846 250 LPSKTA 255 (365)
Q Consensus 250 ~~a~~~ 255 (365)
.++...
T Consensus 90 ~~a~~~ 95 (105)
T 1x5u_A 90 NKASAH 95 (105)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 998643
No 97
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.5e-17 Score=127.03 Aligned_cols=85 Identities=24% Similarity=0.301 Sum_probs=77.4
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEE-EEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL-RLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v-~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
.+.++|||+|||..+++++|+++|++ ||.|..| +|++++ +.++|||||+|.+.++|.+|+. |||..|.|++|+ |
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT-V 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE-E
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE-E
Confidence 35689999999999999999999999 6999999 999874 6789999999999999999999 999999999999 9
Q ss_pred ecCCCCCCCCC
Q 017846 349 SPSKTPVRPRA 359 (365)
Q Consensus 349 ~~a~~~~~~r~ 359 (365)
.++++...++.
T Consensus 81 ~~a~~~~~~~~ 91 (96)
T 1x5t_A 81 SYAFKKDSKGS 91 (96)
T ss_dssp EESCCCCCCCC
T ss_pred EEecccCCCCC
Confidence 99988755443
No 98
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.1e-17 Score=124.87 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
...-|||+||++.+|+++|+++|.+||+|.++++.. +||||||+|.++++|.+|++ ||+..+.|++|+|+.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 456799999999999999999999999999999976 56999999999999999999 9999999999999986
No 99
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=6.8e-18 Score=129.75 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=68.4
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G--~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
.+|||+|||..+++++|+++|++ || .|.+|+++.++ +.++|||||+|.+.++|.+|++ |||..|.|++|+ |.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~-V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV-VTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCE-ECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEE-EEE
Confidence 57999999999999999999999 69 99999999885 6899999999999999999999 999999999999 999
Q ss_pred CCCCCCCC
Q 017846 351 SKTPVRPR 358 (365)
Q Consensus 351 a~~~~~~r 358 (365)
+.++..+.
T Consensus 80 ~~~~~~~~ 87 (90)
T 3p5t_L 80 SNKLEHHH 87 (90)
T ss_dssp C-------
T ss_pred CCCCcccc
Confidence 98774443
No 100
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=5.4e-17 Score=128.14 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=77.4
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCC---eeeE
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGS---LPIR 346 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g---~~l~ 346 (365)
....++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..+.| ++|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 345789999999999999999999999 6999999999886 6789999999999999999999 99999988 9999
Q ss_pred EeecCCCCCCCC
Q 017846 347 LVSPSKTPVRPR 358 (365)
Q Consensus 347 ~V~~a~~~~~~r 358 (365)
|.++++...++
T Consensus 91 -V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 -VKFADTDKESG 101 (105)
T ss_dssp -EEESCSSCCCS
T ss_pred -EEECccCcccC
Confidence 99998875443
No 101
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=9.2e-17 Score=129.00 Aligned_cols=86 Identities=22% Similarity=0.291 Sum_probs=78.1
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
....++|||+|||..+++++|+++|++ ||.|..|+|+++. +.++|||||+|.+.++|.+|++ |||..|.|+.|+ |
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-V 89 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR-T 89 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE-E
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE-E
Confidence 345689999999999999999999999 5999999999885 6789999999999999999999 999999999999 9
Q ss_pred ecCCCCCCCCC
Q 017846 349 SPSKTPVRPRA 359 (365)
Q Consensus 349 ~~a~~~~~~r~ 359 (365)
.|+++...++.
T Consensus 90 ~~a~~~~~~~~ 100 (115)
T 2dgo_A 90 NWATRKPPAPK 100 (115)
T ss_dssp EESSCCCCCSC
T ss_pred EEccCCCCCCc
Confidence 99987755543
No 102
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-17 Score=126.44 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=77.5
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|++++ +.++|||||+|.+.++|.+|++||+..|.|++|+ |.+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~-V~~ 85 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE-VKR 85 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCE-EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEE-EEE
Confidence 34689999999999999999999999 6999999999885 6789999999999999999999999999999999 999
Q ss_pred CCCCCCCCC
Q 017846 351 SKTPVRPRA 359 (365)
Q Consensus 351 a~~~~~~r~ 359 (365)
+++....+.
T Consensus 86 a~~~~~~~~ 94 (99)
T 2dgs_A 86 AEPRDSKSS 94 (99)
T ss_dssp CCCCCCCCC
T ss_pred CCCCcccCC
Confidence 997755443
No 103
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=130.81 Aligned_cols=82 Identities=18% Similarity=0.328 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||.++++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3456899999999999999999999999999999999987 3469999999999999999998 9999999999999999
Q ss_pred CCCC
Q 017846 253 KTAI 256 (365)
Q Consensus 253 ~~~~ 256 (365)
+...
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7543
No 104
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=7.2e-17 Score=121.69 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=72.8
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
.+|||+|||..+++++|+++|++ ||.|.+|.++++. +.++|||||+|.+.++|.+|+. |||..+.|++|+ |.+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~-v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR-INWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE-EEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEE-EEecC
Confidence 68999999999999999999999 6999999999885 6789999999999999999999 999999999999 99998
Q ss_pred CC
Q 017846 353 TP 354 (365)
Q Consensus 353 ~~ 354 (365)
+.
T Consensus 80 ~~ 81 (83)
T 3md1_A 80 KL 81 (83)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 105
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=123.91 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=72.4
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
+.++|||+|||..+++++|+++|++ ||.|.+|.++++. +.++|||||+|.+.++|.+|+. |||..+.|++|+ |.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-v~~ 82 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR-TNW 82 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE-EEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE-EEe
Confidence 4589999999999999999999999 5999999999875 6789999999999999999999 999999999999 999
Q ss_pred CCCC
Q 017846 351 SKTP 354 (365)
Q Consensus 351 a~~~ 354 (365)
+++.
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8764
No 106
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=127.35 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCee-EEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCee----
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV-DCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYP---- 246 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~---- 246 (365)
....++|||+|||+++++++|+++|++||.|. +|+|++++. .++|||||+|.+.++|++|++ |||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 999999874 469999999999999999999 9999999999
Q ss_pred EEEeeCCCC
Q 017846 247 VRVLPSKTA 255 (365)
Q Consensus 247 l~V~~a~~~ 255 (365)
|+|.|++..
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998643
No 107
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=128.68 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++||.|..|+|+.++. .++|||||+|.++++|.+|++ ||+..+.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999864 469999999999999999997 999999999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
++..
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 8654
No 108
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=128.45 Aligned_cols=81 Identities=26% Similarity=0.299 Sum_probs=72.6
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC--CceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-ln--g~~l~g~~l~~V~ 349 (365)
.+.++|||+|||+.+++++|+++|++ ||.|.+|.|+++ +|||||+|++.++|.+|++ |+ +..|.|++|+ |.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~-V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY-IQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC-BC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE-EE
Confidence 35689999999999999999999999 599999999986 5799999999999999999 86 4789999999 99
Q ss_pred cCCCCCCCCC
Q 017846 350 PSKTPVRPRA 359 (365)
Q Consensus 350 ~a~~~~~~r~ 359 (365)
|+++...++.
T Consensus 88 ~A~~~~~~~~ 97 (105)
T 1sjq_A 88 FSNHKELKTD 97 (105)
T ss_dssp CCSSSSCCCT
T ss_pred EcCCCCCCcc
Confidence 9987755543
No 109
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=128.03 Aligned_cols=81 Identities=27% Similarity=0.336 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||.++++++|+++|.+||.|.+|+|+.++. .++|||||+|.+.++|.+|++ |++..+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34568899999999999999999999999999999999874 469999999999999999999 9999999999999998
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
+..
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 643
No 110
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=4.9e-17 Score=124.31 Aligned_cols=78 Identities=32% Similarity=0.575 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
..++|||+|||+++++++|+++|++||.|.+++++.++ +.++|||||+|.+.++|.+|+.++|..+.|++|+|.++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 35789999999999999999999999999999999986 3469999999999999999999999999999999999864
No 111
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.1e-17 Score=126.39 Aligned_cols=81 Identities=23% Similarity=0.287 Sum_probs=74.9
Q ss_pred cccEEEeeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 274 CSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~----~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
..++|||+|||..+++++|+ ++|++ ||.|.+|+|+.+... +|||||+|.+.++|.+|+. |||..|.|++|+ |
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~-V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL-V 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE-E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE-E
Confidence 45799999999999999999 99999 599999999998765 8999999999999999999 999999999999 9
Q ss_pred ecCCCCCCC
Q 017846 349 SPSKTPVRP 357 (365)
Q Consensus 349 ~~a~~~~~~ 357 (365)
.++++...+
T Consensus 85 ~~a~~~~~~ 93 (96)
T 2dgx_A 85 SLATGASGP 93 (96)
T ss_dssp EECCCSSCC
T ss_pred EEcCCCCCC
Confidence 999876544
No 112
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=131.45 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHH---HHhhhCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 017846 176 VIRRTVYVSDIDQQVTEEQLA---TLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYP 246 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~i~~d~~-----~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~ 246 (365)
...++|||+|||+++++++|+ ++|++||.|.+|+|+.++. .++|||||+|.++++|.+|++ |||..+.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356789999999999999999 9999999999999999875 357999999999999999999 9999999999
Q ss_pred EEEeeCCCC
Q 017846 247 VRVLPSKTA 255 (365)
Q Consensus 247 l~V~~a~~~ 255 (365)
|+|.++.+.
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999998754
No 113
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=1.2e-17 Score=131.08 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCC------CCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCC-e
Q 017846 176 VIRRTVYVSDIDQ------QVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGF-Y 245 (365)
Q Consensus 176 ~~~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g-~ 245 (365)
...++|||+|||. ++++++|+++|++||.|.+|+|++++. .++|||||+|.+.++|.+|++ |||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3567999999999 999999999999999999999999985 469999999999999999998 99999999 9
Q ss_pred eEEEeeCC
Q 017846 246 PVRVLPSK 253 (365)
Q Consensus 246 ~l~V~~a~ 253 (365)
+|+|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999974
No 114
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.6e-17 Score=128.53 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hC------CceeCCe
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LA------GTMLGFY 245 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~------g~~i~g~ 245 (365)
....++|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++ ++ +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 44678899999999999999999999999999999999875 469999999999999999998 99 9999999
Q ss_pred eEEEeeCCCC
Q 017846 246 PVRVLPSKTA 255 (365)
Q Consensus 246 ~l~V~~a~~~ 255 (365)
+|+|.++...
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999998643
No 115
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=124.29 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC---CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS---VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~---~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
..++|||+|||+++++++|+++|++||.|.+++++.++.+ ++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4678999999999999999999999999999999998743 68999999999999999999 9999999999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 116
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=127.22 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+++++++|+++|++||.|..|+|..+. .++|||||+|.+.++|.+|++ ||+..|.|++|+|.+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 4467899999999999999999999999999999997753 478999999999999999997 99999999999999987
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
..
T Consensus 98 ~~ 99 (109)
T 1x4a_A 98 SG 99 (109)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 117
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.5e-17 Score=128.31 Aligned_cols=79 Identities=23% Similarity=0.308 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
...++|||+|||.++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++ |+|..+.|++|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4567899999999999999999999999999999999875 369999999999999999998 9999999999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 118
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=4.3e-17 Score=123.51 Aligned_cols=78 Identities=28% Similarity=0.446 Sum_probs=72.6
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
.+.++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|.+|+. |||..+.|++|+ |.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR-VN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE-EE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE-EE
Confidence 35689999999999999999999999 5999999998874 5789999999999999999998 999999999999 99
Q ss_pred cCC
Q 017846 350 PSK 352 (365)
Q Consensus 350 ~a~ 352 (365)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 119
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=128.63 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=78.4
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|++ |||..|.|++|+ |.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-v~ 87 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR-VD 87 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE-EE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE-EE
Confidence 34689999999999999999999999 5999999999875 5789999999999999999998 999999999999 99
Q ss_pred cCCCCCCCCCC
Q 017846 350 PSKTPVRPRAP 360 (365)
Q Consensus 350 ~a~~~~~~r~~ 360 (365)
++++....+..
T Consensus 88 ~a~~~~~~~~~ 98 (102)
T 1x5s_A 88 QAGKSSDNRSG 98 (102)
T ss_dssp EEECCCCCCCC
T ss_pred ECCCCCCCCCC
Confidence 99887666543
No 120
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-17 Score=126.13 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeE--------EEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCcee
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--------CRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTML 242 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i 242 (365)
.+...++|||+|||.++++++|+++|++||.|.+ ++++.++. .++|||||+|.+.++|.+|++ |+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456789999999999999999999999999999 99999864 469999999999999999998 999999
Q ss_pred CCeeEEEeeCC
Q 017846 243 GFYPVRVLPSK 253 (365)
Q Consensus 243 ~g~~l~V~~a~ 253 (365)
.|+.|+|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999973
No 121
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.6e-17 Score=127.53 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC---CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN---SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~---~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|+.|| |.+|+|+.++. .++|||||+|.+.++|.+||.|++..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999 99999999874 469999999999999999999999999999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
+...
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8653
No 122
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.3e-17 Score=125.69 Aligned_cols=83 Identities=18% Similarity=0.303 Sum_probs=76.3
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
....++|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK-VA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE-EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE-EE
Confidence 345689999999999999999999999 6999999999887 6789999999999999999999 999999999999 99
Q ss_pred cCCCCCC
Q 017846 350 PSKTPVR 356 (365)
Q Consensus 350 ~a~~~~~ 356 (365)
+++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9887643
No 123
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=9.9e-17 Score=126.28 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||+++++++|+++|++|| |.+|+|+.++. .++|||||+|.+.++|.+|+.|++..|.|++|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34578999999999999999999999997 99999999874 4699999999999999999999999999999999998
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
...
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 124
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=1.6e-17 Score=123.01 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=68.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeC
Q 017846 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a 252 (365)
+|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.++++|++|+++++..+.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999999999999999873 4799999999999999999999999999999999985
No 125
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=128.70 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
.+...++|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++ +++ .+.|++|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 355678999999999999999999999999999999999874 479999999999999999999 888 8999999999
Q ss_pred eCCCC
Q 017846 251 PSKTA 255 (365)
Q Consensus 251 ~a~~~ 255 (365)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 99654
No 126
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=128.45 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=79.5
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
....++|||.|||..+++++|+++|++ ||.|..|+|++++ +.++|||||+|.+.++|.+|+. +++ .|.|++|+ |
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~-V 90 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN-V 90 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE-E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE-E
Confidence 345689999999999999999999999 6999999999886 6789999999999999999999 998 89999999 9
Q ss_pred ecCCCCCCCCCCCC
Q 017846 349 SPSKTPVRPRAPRP 362 (365)
Q Consensus 349 ~~a~~~~~~r~~~~ 362 (365)
.++++...++..++
T Consensus 91 ~~a~~~~~~~~~~~ 104 (116)
T 2cqd_A 91 NLAYLGAKPRSLQT 104 (116)
T ss_dssp EESTTTCCCCCCCC
T ss_pred EEcccCCCccccCC
Confidence 99988777666554
No 127
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=125.39 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-h--CCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-L--AGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l--~g~~i~g~~l~V~~a 252 (365)
...++|||+|||+++++++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++ + ++..+.|++|.|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 35689999999999999999999999999999999876 5899999999999999998 6 577899999999999
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
+..
T Consensus 89 ~~~ 91 (101)
T 2cq1_A 89 NHK 91 (101)
T ss_dssp SCS
T ss_pred Ccc
Confidence 754
No 128
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=127.38 Aligned_cols=82 Identities=27% Similarity=0.366 Sum_probs=75.0
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~~ 90 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH-VKM 90 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE-EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE-EEE
Confidence 34689999999999999999999999 6999999999876 6789999999999999999999 999999999999 999
Q ss_pred CCCCCC
Q 017846 351 SKTPVR 356 (365)
Q Consensus 351 a~~~~~ 356 (365)
++....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 875433
No 129
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=123.60 Aligned_cols=80 Identities=23% Similarity=0.270 Sum_probs=74.4
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
..+.++|||+|||..+++++|+++|++ ||.|..|.+++++ +.++|||||+|.+.++|.+|+. |||..|.|++|+ |
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-v 89 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR-V 89 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE-E
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE-E
Confidence 345689999999999999999999999 6999999999876 5789999999999999999999 999999999999 9
Q ss_pred ecCCC
Q 017846 349 SPSKT 353 (365)
Q Consensus 349 ~~a~~ 353 (365)
.++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 130
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=8.3e-17 Score=128.10 Aligned_cols=82 Identities=24% Similarity=0.383 Sum_probs=75.2
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
+.....++|||+|||+.+++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ ++|..+.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4455678999999999999999999999999999999999864 369999999999999999998 9999999999999
Q ss_pred eeCCC
Q 017846 250 LPSKT 254 (365)
Q Consensus 250 ~~a~~ 254 (365)
.++++
T Consensus 101 ~~a~~ 105 (108)
T 2jrs_A 101 GHVTE 105 (108)
T ss_dssp ECSCS
T ss_pred EEccc
Confidence 99863
No 131
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=6.7e-17 Score=127.81 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCcee---CCeeE
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTML---GFYPV 247 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i---~g~~l 247 (365)
.+...++|||+|||.++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++ |++..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999999874 479999999999999999998 999987 88999
Q ss_pred EEeeCCCC
Q 017846 248 RVLPSKTA 255 (365)
Q Consensus 248 ~V~~a~~~ 255 (365)
+|.++...
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99998643
No 132
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=4.5e-17 Score=128.90 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCC------cHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCe-
Q 017846 174 DEVIRRTVYVSDIDQQV------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY- 245 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~- 245 (365)
.....++|||+|||+.+ ++++|+++|++||.|.+|+|++..+.++|||||+|.+.++|.+|+. |||..+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34456899999999999 8899999999999999999996556789999999999999999999 999999998
Q ss_pred eEEEeeCC
Q 017846 246 PVRVLPSK 253 (365)
Q Consensus 246 ~l~V~~a~ 253 (365)
+|+|.++.
T Consensus 91 ~l~V~~a~ 98 (105)
T 2nlw_A 91 TFRVNLFT 98 (105)
T ss_dssp EEEEECSC
T ss_pred eEEEEEcc
Confidence 99999985
No 133
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.7e-17 Score=126.72 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhh-CCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCce-eCCeeEEEe
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLT-CGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTM-LGFYPVRVL 250 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~-i~g~~l~V~ 250 (365)
....++|||+|||+++++++|+++|++ ||.|.+|+|+.++ +.++|||||+|.+.++|.+|++ |++.. +.|++|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 446688999999999999999999999 9999999999987 3369999999999999999999 99999 999999999
Q ss_pred eCCCC
Q 017846 251 PSKTA 255 (365)
Q Consensus 251 ~a~~~ 255 (365)
++...
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 98644
No 134
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=128.39 Aligned_cols=76 Identities=29% Similarity=0.292 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCC-CCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCc--eeCCeeEEEee
Q 017846 176 VIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGT--MLGFYPVRVLP 251 (365)
Q Consensus 176 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~--~i~g~~l~V~~ 251 (365)
...++|||+|||+ ++++++|+++|++||.|.+|+|++++ |||||+|.++++|.+|++ |++. .+.|++|+|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 3578999999999 99999999999999999999998764 799999999999999998 8864 59999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
++..
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9743
No 135
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=1.1e-16 Score=126.85 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||+.+++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++ |+|..+.|++|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 44678999999999999999999999999999999999873 369999999999999999999 9999999999999997
Q ss_pred C
Q 017846 253 K 253 (365)
Q Consensus 253 ~ 253 (365)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=1e-16 Score=124.59 Aligned_cols=81 Identities=28% Similarity=0.322 Sum_probs=75.5
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
.++|||+|||..+++++|+++|++ ||.|.+|+++.+. +.++|||||+|.+.++|.+|+. |||..++|+.|+ |.++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~-V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK-CGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE-EEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEE-EEEc
Confidence 579999999999999999999999 6999999999885 6789999999999999999999 999999999999 9999
Q ss_pred CCCCCC
Q 017846 352 KTPVRP 357 (365)
Q Consensus 352 ~~~~~~ 357 (365)
++....
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 877544
No 137
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=8.9e-17 Score=128.06 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||..+++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|+. |+|..+.|++|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568899999999999999999999999999999998864 469999999999999999998 999999999999999
Q ss_pred CCC
Q 017846 252 SKT 254 (365)
Q Consensus 252 a~~ 254 (365)
+..
T Consensus 103 a~~ 105 (110)
T 1oo0_B 103 CFV 105 (110)
T ss_dssp SEE
T ss_pred ccc
Confidence 863
No 138
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=4.8e-17 Score=131.26 Aligned_cols=79 Identities=24% Similarity=0.416 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999999864 469999999999999999998 999999999999998
Q ss_pred CC
Q 017846 252 SK 253 (365)
Q Consensus 252 a~ 253 (365)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 139
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=3.9e-17 Score=160.77 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
...++|||+|||+.+|+++|.++|++||.|..|.|+.++. .++|||||+|.+.++|.+||. |||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 3457999999999999999999999999999999999863 469999999999999999998 9999999999999998
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 743
No 140
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=124.34 Aligned_cols=76 Identities=24% Similarity=0.206 Sum_probs=69.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCce--eCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTM--LGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~--i~g~~l~V~~ 251 (365)
..++++|||+|||.++|+++|+++|++||.|.+++++++ ||||||+|.+.++|.+|++ +++.. +.|++|+|.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 346789999999999999999999999999999999864 5899999999999999998 88875 7899999999
Q ss_pred CCC
Q 017846 252 SKT 254 (365)
Q Consensus 252 a~~ 254 (365)
++.
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 864
No 141
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=129.29 Aligned_cols=84 Identities=20% Similarity=0.344 Sum_probs=77.4
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~-V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK-VEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE-EEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE-EEEC
Confidence 4589999999999999999999999 6999999999886 6789999999999999999999 999999999999 9999
Q ss_pred CCCCCCCC
Q 017846 352 KTPVRPRA 359 (365)
Q Consensus 352 ~~~~~~r~ 359 (365)
+++.....
T Consensus 84 ~~~~~~~~ 91 (116)
T 2fy1_A 84 KKPSFQSG 91 (116)
T ss_dssp CCSSCSSS
T ss_pred CCCCCCCC
Confidence 87765543
No 142
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=123.38 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=73.8
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|++++ +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-V~~ 91 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN-VSG 91 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE-EEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE-EEE
Confidence 34689999999999999999999999 5999999999876 6789999999999999999999 999999999999 999
Q ss_pred CCC
Q 017846 351 SKT 353 (365)
Q Consensus 351 a~~ 353 (365)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 143
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-16 Score=123.76 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~ 251 (365)
.....++|||+|||+++++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|+. +++.+.|++|.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 345678899999999999999999999999999999999874 469999999999999999999 57799999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 8754
No 144
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=125.99 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=76.9
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc---CCCcceEEEEEeCCHHHHHHHHH-h-CCceeCCeeeE
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---YQHSTRIAFVEFAMAESAIAALN-C-SGAVLGSLPIR 346 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d---~~~~kg~afV~F~~~~~A~~Al~-l-ng~~l~g~~l~ 346 (365)
....++|||+|||..+++++|+++|++ ||.|..|.|+++ .+.++|||||+|.+.++|.+|+. | |+..|.|++|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 345689999999999999999999999 699999999988 36889999999999999999999 9 99999999999
Q ss_pred EeecCCCCCCC
Q 017846 347 LVSPSKTPVRP 357 (365)
Q Consensus 347 ~V~~a~~~~~~ 357 (365)
|.|+++....
T Consensus 91 -v~~a~~~~~~ 100 (107)
T 2cph_A 91 -LEWADSEVTV 100 (107)
T ss_dssp -EEECCCCCCC
T ss_pred -EEeCCCCCCC
Confidence 9999877444
No 145
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-17 Score=129.60 Aligned_cols=76 Identities=24% Similarity=0.303 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hC--CceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~--g~~i~g~~l~V~~a 252 (365)
...++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++ ++ +..+.|++|+|.++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 35689999999999999999999999999999999986 5899999999999999998 77 46899999999999
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
+..
T Consensus 105 ~~k 107 (119)
T 2ad9_A 105 NHK 107 (119)
T ss_dssp SSS
T ss_pred cCC
Confidence 753
No 146
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=127.75 Aligned_cols=82 Identities=24% Similarity=0.329 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCee--------EEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCcee
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--------DCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTML 242 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i 242 (365)
.....++|||+|||+++++++|+++|++||.|. .|+|+.++. .++|||||+|.+.++|.+|++ |++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 699999864 469999999999999999998 999999
Q ss_pred CCeeEEEeeCCCC
Q 017846 243 GFYPVRVLPSKTA 255 (365)
Q Consensus 243 ~g~~l~V~~a~~~ 255 (365)
.|++|+|.+++..
T Consensus 91 ~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGSKLKVSLARKK 103 (113)
T ss_dssp TTEECEEECSSCC
T ss_pred CCCEEEEEECCCC
Confidence 9999999998753
No 147
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.7e-17 Score=128.82 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=76.2
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
....++|||+|||..+++++|+++|++ ||.|..|.+.++.+.++|||||+|.+.++|.+|+. |||..|+|++|+ |.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~-V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE-VNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE-EEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE-EEE
Confidence 446789999999999999999999999 69999999999987799999999999999999999 999999999999 999
Q ss_pred CCCC
Q 017846 351 SKTP 354 (365)
Q Consensus 351 a~~~ 354 (365)
+++.
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8875
No 148
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=136.10 Aligned_cols=77 Identities=26% Similarity=0.347 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCC--CeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
..++|||+|||+++++++|+++|++|| .|.+|+|+.|+. .++|||||+|.+.++|.+||+ |||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 999999999864 469999999999999999999 999999999999999
Q ss_pred CC
Q 017846 252 SK 253 (365)
Q Consensus 252 a~ 253 (365)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 149
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=123.56 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=66.6
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCe-eEEE
Q 017846 178 RRTVYVSDIDQQV------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY-PVRV 249 (365)
Q Consensus 178 ~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~-~l~V 249 (365)
.++|||+|||..+ ++++|+++|++||.|.+++++.+.+.++|||||+|.+.++|.+|++ |||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 7899999999999999999986656789999999999999999998 999999999 8876
No 150
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2e-16 Score=126.02 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=76.5
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hC------CceeCCe
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CS------GAVLGSL 343 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-ln------g~~l~g~ 343 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|+. || +..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 35689999999999999999999999 6999999999886 5789999999999999999999 99 9999999
Q ss_pred eeEEeecCCCCCCCC
Q 017846 344 PIRLVSPSKTPVRPR 358 (365)
Q Consensus 344 ~l~~V~~a~~~~~~r 358 (365)
+|+ |.++++.....
T Consensus 92 ~l~-v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLK-VDLAVTRDEAA 105 (111)
T ss_dssp EEE-EECCCCCCCCC
T ss_pred EEE-EEECCCCccCC
Confidence 999 99998764433
No 151
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=126.35 Aligned_cols=82 Identities=26% Similarity=0.357 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~ 251 (365)
.....++|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++.++..|.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 345678999999999999999999999999999999999864 469999999999999999998899999999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
+.+.
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8643
No 152
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=1.5e-16 Score=126.87 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=70.9
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEe
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~ 250 (365)
......++|||+|||.++++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|.+|++..+..+.|+.|+|.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 344567889999999999999999999999999999999987 457999999999999999999955699999999999
Q ss_pred eCCC
Q 017846 251 PSKT 254 (365)
Q Consensus 251 ~a~~ 254 (365)
++..
T Consensus 100 ~a~~ 103 (109)
T 2rs2_A 100 VAFP 103 (109)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9864
No 153
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=123.68 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=72.9
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
...++|||+|||..+++++|+++|++ ||.|..|.+++++ +.++|||||+|.+.++|.+|++ |||..|.|++|+ |.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-v~ 91 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK-AS 91 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE-EE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE-EE
Confidence 45689999999999999999999999 6999999999876 5789999999999999999999 999999999999 99
Q ss_pred cCC
Q 017846 350 PSK 352 (365)
Q Consensus 350 ~a~ 352 (365)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 154
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=126.11 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
.....++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|++ |+|..+.|++|+|.|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 3446789999999999999999999999999999999987 5899999999999999997 9999999999999999
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
+..
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 155
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=125.70 Aligned_cols=85 Identities=25% Similarity=0.272 Sum_probs=77.8
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~ 90 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR-VN 90 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE-EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE-EE
Confidence 35689999999999999999999999 6999999999875 6799999999999999999999 999999999999 99
Q ss_pred cCCCCCCCCC
Q 017846 350 PSKTPVRPRA 359 (365)
Q Consensus 350 ~a~~~~~~r~ 359 (365)
++++....+.
T Consensus 91 ~a~~~~~~~~ 100 (105)
T 1x5u_A 91 KASAHNKNLS 100 (105)
T ss_dssp ETTTTSCCCC
T ss_pred ECCCCCcCCC
Confidence 9988755543
No 156
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=121.26 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+++++++|+++|+.| .|.+|+|+++. +.++|||||+|.+.++|.+|+.+++..+.|+.|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 4467899999999999999999999999 99999999984 346999999999999999999999999999999999986
Q ss_pred C
Q 017846 254 T 254 (365)
Q Consensus 254 ~ 254 (365)
.
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 4
No 157
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8.8e-17 Score=126.53 Aligned_cols=82 Identities=22% Similarity=0.259 Sum_probs=75.7
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-V~ 88 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR-VQ 88 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE-EE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE-EE
Confidence 34689999999999999999999999 6999999999876 6789999999999999999999 999999999999 99
Q ss_pred cCCCCCC
Q 017846 350 PSKTPVR 356 (365)
Q Consensus 350 ~a~~~~~ 356 (365)
++++...
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9987643
No 158
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=8.1e-17 Score=128.67 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
+....+|||+|||+++++++|+++|++|| .|..+++..+ .++|||||+|.+.++|++|++ |||..+.|+.|+|.++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34567899999999999999999999999 9999998653 368999999999999999998 9999999999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 159
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.68 E-value=9.9e-17 Score=131.82 Aligned_cols=82 Identities=27% Similarity=0.251 Sum_probs=75.5
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
..+...++|||+|||+++++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|++ |+|..|.|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3455678999999999999999999999999999999999874 479999999999999999998 9999999999999
Q ss_pred eeCCC
Q 017846 250 LPSKT 254 (365)
Q Consensus 250 ~~a~~ 254 (365)
.++..
T Consensus 121 ~~a~~ 125 (129)
T 2kxn_B 121 DFSIT 125 (129)
T ss_dssp SCCSS
T ss_pred EEecC
Confidence 99864
No 160
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=121.26 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+++++++|+++|++||.|.+++++ +|||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 4467899999999999999999999999999999998 4799999999999999998 99999999999999987
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
..
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 161
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=2.4e-16 Score=128.42 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||..+++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|.+|++ |+|..+.|++|+|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 3456789999999999999999999999999999999987 3469999999999999999999 9999999999999999
Q ss_pred CCCC
Q 017846 253 KTAI 256 (365)
Q Consensus 253 ~~~~ 256 (365)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7543
No 162
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-17 Score=124.64 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
...++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4578999999999999999999999999999999999864 469999999999999999999 9999999999998876
Q ss_pred C
Q 017846 253 K 253 (365)
Q Consensus 253 ~ 253 (365)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 163
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=3.1e-16 Score=123.41 Aligned_cols=83 Identities=28% Similarity=0.424 Sum_probs=75.9
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
.+.++|||+|||..+++++|+++|++ || |..|.|+++. +.++|||||+|.+.++|.+|+.|||..|.|++|+ |.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~-V~~ 89 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKD-LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLR-VDI 89 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTT-SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECE-EEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEE-EEE
Confidence 45689999999999999999999999 57 9999999886 6789999999999999999999999999999999 999
Q ss_pred CCCCCCCC
Q 017846 351 SKTPVRPR 358 (365)
Q Consensus 351 a~~~~~~r 358 (365)
+++....+
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 98765544
No 164
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.5e-16 Score=126.74 Aligned_cols=83 Identities=23% Similarity=0.271 Sum_probs=76.0
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
....++|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~-V 100 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ-V 100 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE-E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE-E
Confidence 345689999999999999999999999 5999999999875 6789999999999999999999 999999999999 9
Q ss_pred ecCCCCCC
Q 017846 349 SPSKTPVR 356 (365)
Q Consensus 349 ~~a~~~~~ 356 (365)
.|+++...
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99886543
No 165
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=1.6e-16 Score=125.68 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=76.6
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCcee---CCeeeE
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVL---GSLPIR 346 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l---~g~~l~ 346 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|++++ +.++|||||+|.+.++|.+|+. |||..+ .|++|+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45689999999999999999999999 5999999999875 6789999999999999999999 999988 899999
Q ss_pred EeecCCCCCCCC
Q 017846 347 LVSPSKTPVRPR 358 (365)
Q Consensus 347 ~V~~a~~~~~~r 358 (365)
|.++++.....
T Consensus 90 -v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 -VKPADSESRGG 100 (106)
T ss_dssp -EEECCCCSCCC
T ss_pred -EEECCcccccC
Confidence 99998875543
No 166
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=121.25 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=73.1
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC---CcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ---HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~---~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
..++|||+|||..+++++|+++|++ ||.|..|.++.+.. .++|||||+|.+.++|.+|+. |||..+.|++|+ |+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT-AT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE-EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE-EE
Confidence 3579999999999999999999999 69999999988872 388999999999999999999 999999999999 99
Q ss_pred cCCCC
Q 017846 350 PSKTP 354 (365)
Q Consensus 350 ~a~~~ 354 (365)
++.++
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 98765
No 167
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=3.5e-16 Score=129.89 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=76.2
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
......++|||+|||.++++++|+++|+.||.|.+|+|+.++.+ ++|||||+|.+.++|.+|++ |++..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999998754 69999999999999999998 9999999999999
Q ss_pred eeCCCC
Q 017846 250 LPSKTA 255 (365)
Q Consensus 250 ~~a~~~ 255 (365)
.+++..
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 999754
No 168
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-16 Score=126.11 Aligned_cols=84 Identities=23% Similarity=0.321 Sum_probs=76.4
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceE--------EEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ--------RLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLG 341 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~--------~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~ 341 (365)
...++|||+|||..+++++|+++|++ ||.|. .|+|+.+. +.++|||||+|.+.++|.+|+. |||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45689999999999999999999999 69999 69998875 6889999999999999999999 9999999
Q ss_pred CeeeEEeecCCCCCCCC
Q 017846 342 SLPIRLVSPSKTPVRPR 358 (365)
Q Consensus 342 g~~l~~V~~a~~~~~~r 358 (365)
|++|+ |.++++.....
T Consensus 92 g~~l~-V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLK-VSLARKKPPMN 107 (113)
T ss_dssp TEECE-EECSSCCCCST
T ss_pred CCEEE-EEECCCCCCCC
Confidence 99999 99998875443
No 169
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=125.70 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=75.2
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
....++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~-V 100 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK-V 100 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE-E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE-E
Confidence 345689999999999999999999999 6999999999875 5789999999999999999999 999999999999 9
Q ss_pred ecCCCC
Q 017846 349 SPSKTP 354 (365)
Q Consensus 349 ~~a~~~ 354 (365)
.++++.
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998865
No 170
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.5e-17 Score=127.37 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~ 253 (365)
+...++|||+|||+++++++|+++|++||. ++|+|+.|+ ++++|||||+|.++++|.+||++++..|.|+.|+|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 445679999999999999999999999994 599999987 346999999999999999999999999999999999986
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 171
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=124.00 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=75.1
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceE-EEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCee----
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ-RLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP---- 344 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~-~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~---- 344 (365)
...++|||+|||..+++++|+++|++ ||.|. .|+|++++ +.++|||||+|.+.++|.+|+. |||..+.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34689999999999999999999999 69999 99999886 6789999999999999999999 9999999999
Q ss_pred eEEeecCCCCC
Q 017846 345 IRLVSPSKTPV 355 (365)
Q Consensus 345 l~~V~~a~~~~ 355 (365)
|+ |.|+++..
T Consensus 86 l~-v~~a~~~~ 95 (99)
T 2div_A 86 FK-LNYATYSG 95 (99)
T ss_dssp CC-EEETTCCS
T ss_pred EE-EeecCCCC
Confidence 99 99998763
No 172
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=8.1e-17 Score=133.38 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCC---eeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEE
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRV 249 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V 249 (365)
.....++|||+|||+++|+++|+++|++||. |.+|+|++|+ ++++|||||+|.++++|++||++++..|.|+.|+|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 3446789999999999999999999999999 8999999987 45799999999999999999999999999999999
Q ss_pred eeCC
Q 017846 250 LPSK 253 (365)
Q Consensus 250 ~~a~ 253 (365)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9974
No 173
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=1.1e-16 Score=129.53 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCC---eeEEEEecCCC-CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEe
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~ 250 (365)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. +++|||||+|.++++|.+||++++..|.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 345688999999999999999999999999 89999998874 57999999999999999999999999999999999
Q ss_pred eCC
Q 017846 251 PSK 253 (365)
Q Consensus 251 ~a~ 253 (365)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 974
No 174
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=128.12 Aligned_cols=84 Identities=25% Similarity=0.292 Sum_probs=74.8
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC--ceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG--AVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng--~~l~g~~l~~V 348 (365)
..+.++|||+|||+.+++++|+++|++ ||.|.+|.|+++ +|||||+|++.++|.+|+. |++ ..|.|++|+ |
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~-V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY-I 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE-E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE-E
Confidence 345689999999999999999999999 699999999986 5799999999999999999 874 689999999 9
Q ss_pred ecCCCCCCCCCCC
Q 017846 349 SPSKTPVRPRAPR 361 (365)
Q Consensus 349 ~~a~~~~~~r~~~ 361 (365)
.|+++...++...
T Consensus 102 ~~a~~k~~~~~~~ 114 (119)
T 2ad9_A 102 QFSNHKELKTDSS 114 (119)
T ss_dssp EECSSSSCCCCCC
T ss_pred EEccCCCCCcccc
Confidence 9998876666543
No 175
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=125.38 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCc--eeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGT--MLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~--~i~g~~l~V~~a 252 (365)
...++|||+|||+++++++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++ |++. .+.|++|+|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 35689999999999999999999999999999999875 5899999999999999998 8654 589999999999
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
+..
T Consensus 89 ~~~ 91 (104)
T 1wex_A 89 TSK 91 (104)
T ss_dssp SSS
T ss_pred cCc
Confidence 753
No 176
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=122.51 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeC--CeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG--FYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~--g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|++ ||+..+. |++|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 345688999999999999999999999999999999875 5899999999999999998 9999999 99999999
Q ss_pred CCC
Q 017846 252 SKT 254 (365)
Q Consensus 252 a~~ 254 (365)
+++
T Consensus 90 a~~ 92 (97)
T 1why_A 90 AKS 92 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 177
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=119.79 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-h-CCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l-~g~~i~g~~l~V~~a 252 (365)
+...++|||+|||+++++++|+++|++||.|.+++++++ +|||||+|.+.++|.+|++ | ++..+.|++|+|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 446688999999999999999999999999999999975 5899999999999999999 8 999999999999997
Q ss_pred C
Q 017846 253 K 253 (365)
Q Consensus 253 ~ 253 (365)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=126.65 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
..++|||+|||+++++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+||+.++..|.|+.|+|.++.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 457899999999999999999999999999999999874 469999999999999999998899999999999999865
Q ss_pred C
Q 017846 255 A 255 (365)
Q Consensus 255 ~ 255 (365)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 179
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.3e-17 Score=129.28 Aligned_cols=79 Identities=16% Similarity=0.110 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCe-eEEEEecCC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV-VDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a 252 (365)
+...++|||+|||+++++++|+++|+.||.| ..|+|+.|+ +.++|||||+|.+.++|.+||++++..|.|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 4467899999999999999999999999999 899999988 34799999999999999999999999999999999998
Q ss_pred C
Q 017846 253 K 253 (365)
Q Consensus 253 ~ 253 (365)
.
T Consensus 92 ~ 92 (114)
T 2cpy_A 92 T 92 (114)
T ss_dssp C
T ss_pred C
Confidence 5
No 180
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=2.7e-16 Score=128.09 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=80.5
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
....++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~-V~ 109 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD-IQ 109 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE-EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE-EE
Confidence 345689999999999999999999999 6999999999886 6789999999999999999999 999999999999 99
Q ss_pred cCCCCCCCCCCCC
Q 017846 350 PSKTPVRPRAPRP 362 (365)
Q Consensus 350 ~a~~~~~~r~~~~ 362 (365)
++.+...+.++.|
T Consensus 110 ~a~~~~~~~~~~~ 122 (124)
T 2kt5_A 110 LVASQIDLEHHHH 122 (124)
T ss_dssp EECCTTCCCCCCC
T ss_pred EeCCCCCCCCCcC
Confidence 9998766665444
No 181
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=3.2e-16 Score=119.73 Aligned_cols=79 Identities=30% Similarity=0.540 Sum_probs=73.9
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a 351 (365)
..++|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|+.|||..|.|++|+ |.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~-V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIK-VIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECE-EEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEE-EEEc
Confidence 3589999999999999999999999 5999999999875 6789999999999999999999999999999999 9998
Q ss_pred CCC
Q 017846 352 KTP 354 (365)
Q Consensus 352 ~~~ 354 (365)
+++
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 764
No 182
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-16 Score=123.23 Aligned_cols=82 Identities=22% Similarity=0.282 Sum_probs=74.4
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...++|||.|||..+++++|+++|++ ||.|..|.|..+ +.++|||||+|.+.++|.+|++ ||+..|.|++|+ |.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR-VEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE-EECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE-EEEc
Confidence 45689999999999999999999999 599999999665 4588999999999999999998 999999999999 9999
Q ss_pred CCCCCC
Q 017846 352 KTPVRP 357 (365)
Q Consensus 352 ~~~~~~ 357 (365)
++....
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876443
No 183
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=124.78 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
...++|||+|||+++++++|+++|++||.|..+.++.++. .++|||||+|.++++|.+|++ |+|..+.|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3567899999999999999999999999999888887764 469999999999999999997 9999999999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 184
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=124.08 Aligned_cols=84 Identities=25% Similarity=0.339 Sum_probs=76.7
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhh-cCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCce-eCCeeeEEe
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFES-VCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAV-LGSLPIRLV 348 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~-~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~-l~g~~l~~V 348 (365)
.+.++|||+|||..+++++|+++|++ | |.|..|.|+++. +.++|||||+|.+.++|.+|+. |||.. |.|++|+ |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~-G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~-v 84 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVY-PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR-L 84 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHC-TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC-C
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE-E
Confidence 34589999999999999999999998 6 999999999886 6789999999999999999999 99999 9999999 9
Q ss_pred ecCCCCCCCC
Q 017846 349 SPSKTPVRPR 358 (365)
Q Consensus 349 ~~a~~~~~~r 358 (365)
.++++....+
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9997765543
No 185
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=125.37 Aligned_cols=80 Identities=24% Similarity=0.283 Sum_probs=74.5
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
...++|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-V~ 98 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS-VD 98 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE-EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE-EE
Confidence 45689999999999999999999999 5999999999876 6789999999999999999999 999999999999 99
Q ss_pred cCCCC
Q 017846 350 PSKTP 354 (365)
Q Consensus 350 ~a~~~ 354 (365)
++++.
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98764
No 186
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.2e-16 Score=122.40 Aligned_cols=81 Identities=23% Similarity=0.273 Sum_probs=72.9
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-h--CCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-C--SGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-l--ng~~l~g~~l~~V~ 349 (365)
.+.++|||+|||..+++++|+++|++ ||.|..|.++++ +|||||+|.+.++|.+|++ | ++..+.|++|+ |.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~-V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY-IQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE-EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE-EE
Confidence 45689999999999999999999999 699999999876 5799999999999999998 6 57889999999 99
Q ss_pred cCCCCCCCCC
Q 017846 350 PSKTPVRPRA 359 (365)
Q Consensus 350 ~a~~~~~~r~ 359 (365)
|+++...++.
T Consensus 87 ~a~~~~~~~~ 96 (101)
T 2cq1_A 87 YSNHKELKTS 96 (101)
T ss_dssp ECSCSSCCCC
T ss_pred EcCcccCcCC
Confidence 9997766653
No 187
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6e-16 Score=122.96 Aligned_cols=75 Identities=21% Similarity=0.182 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCC-----eeEEE
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF-----YPVRV 249 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g-----~~l~V 249 (365)
...++|||+|||+++++++|+++|++||.|..|+|+.+ |||||+|.+.++|.+||+ ||+..|.| +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 45679999999999999999999999999999999987 799999999999999999 99999999 99999
Q ss_pred eeCCCC
Q 017846 250 LPSKTA 255 (365)
Q Consensus 250 ~~a~~~ 255 (365)
.++.+.
T Consensus 88 ~~a~~~ 93 (108)
T 1x4c_A 88 KVDGPR 93 (108)
T ss_dssp EESSCC
T ss_pred EeCCCC
Confidence 999753
No 188
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.7e-16 Score=124.38 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
+...++|||+|||.++++++|+++|++||.|.++++.. ++|||||+|.+.++|.+|+. |+|..+.|+.|+|.|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 34568999999999999999999999999999999984 46899999999999999998 99999999999999985
No 189
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=125.83 Aligned_cols=80 Identities=21% Similarity=0.352 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCcee--------C
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTML--------G 243 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i--------~ 243 (365)
.....++|||+|||+++++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|.+|++ |||..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 34567899999999999999999999999999999999987 3369999999999999999999 999999 5
Q ss_pred CeeEEEeeCC
Q 017846 244 FYPVRVLPSK 253 (365)
Q Consensus 244 g~~l~V~~a~ 253 (365)
+++|.|.++.
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 7889999986
No 190
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.6e-16 Score=123.79 Aligned_cols=83 Identities=20% Similarity=0.335 Sum_probs=75.6
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
....++|||+|||..+++++|+++|++ ||.|..|.++++ +|||||+|.+.++|.+|+. |||..|.|++|+ |.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK-CYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECE-EEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEE-EEe
Confidence 456789999999999999999999999 599999999987 5799999999999999998 999999999999 999
Q ss_pred CCCCCCCCCC
Q 017846 351 SKTPVRPRAP 360 (365)
Q Consensus 351 a~~~~~~r~~ 360 (365)
+++....+.+
T Consensus 96 a~~~~~~~~~ 105 (109)
T 1x4g_A 96 GKESPDMTSG 105 (109)
T ss_dssp CCCCCSSCCC
T ss_pred cCCCCCCCCC
Confidence 9987665543
No 191
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=125.87 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=70.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 017846 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~ 253 (365)
..+|||+|||+++++++|+++|+.| .|.+|+|+.|+ ++++|||||+|.++++|.+||.+++..|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 89999999987 457999999999999999999999999999999998874
No 192
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=2.5e-16 Score=128.19 Aligned_cols=79 Identities=28% Similarity=0.518 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
..++|||+|||.++++++|+++|++||.|.+|+++.++ +.++|||||+|.+.++|.+|++++|..+.|+.|+|.+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 45789999999999999999999999999999999986 4479999999999999999999999999999999999874
Q ss_pred C
Q 017846 255 A 255 (365)
Q Consensus 255 ~ 255 (365)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 193
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.4e-16 Score=122.74 Aligned_cols=83 Identities=24% Similarity=0.326 Sum_probs=76.0
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~---~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~ 349 (365)
.+.++|||+|||..+++++|+++|++ || |..|.|+++. +.++|||||+|.+.++|.+||.||+..|.|++|+ |.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~-V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR-VD 89 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE-EE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE-EE
Confidence 34589999999999999999999999 59 9999999886 6789999999999999999999999999999999 99
Q ss_pred cCCCCCCCC
Q 017846 350 PSKTPVRPR 358 (365)
Q Consensus 350 ~a~~~~~~r 358 (365)
++++....+
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 998875554
No 194
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=3.4e-16 Score=127.40 Aligned_cols=84 Identities=32% Similarity=0.529 Sum_probs=76.9
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVS 349 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~ 349 (365)
....++|||+|||..+++++|+++|++ ||.|..|.+++++ +.++|||||+|.+.++|.+|+.|||..|.|++|+ |.
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~-V~ 110 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIK-VL 110 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECE-EE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEE-EE
Confidence 446789999999999999999999999 6999999999874 6889999999999999999999999999999999 99
Q ss_pred cCCCCCCC
Q 017846 350 PSKTPVRP 357 (365)
Q Consensus 350 ~a~~~~~~ 357 (365)
++++....
T Consensus 111 ~a~~~~~~ 118 (124)
T 2jwn_A 111 PKRTNMPG 118 (124)
T ss_dssp ESSCCCSS
T ss_pred ECCCCCCC
Confidence 99876443
No 195
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.1e-16 Score=119.06 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=71.7
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
.+.++|||+|||..+++++|+++|++ ||.|..|.+. +|||||+|.+.++|.+|+. |||..|.|++|+ |.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNIN-VEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCE-EECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEE-EEEC
Confidence 35689999999999999999999999 6999999997 4699999999999999999 999999999999 9999
Q ss_pred CCCCCCC
Q 017846 352 KTPVRPR 358 (365)
Q Consensus 352 ~~~~~~r 358 (365)
++....+
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 8875544
No 196
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=3.6e-16 Score=119.03 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=71.3
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
...++|||+|||..+++++|+++|++ ||.|..|.+++++ +.++|||||+|.+.++|.+|+.+++..|.|++|+ |.+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~-v~~ 86 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-PKK 86 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEE-EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEE-EEe
Confidence 45689999999999999999999999 6999999999875 6789999999999999999999888899999999 987
Q ss_pred C
Q 017846 351 S 351 (365)
Q Consensus 351 a 351 (365)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 197
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.6e-16 Score=124.20 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCC-eeEEEEe-cCCC--CCceEEEEEeCCHHHHHHHHH-hC--CceeCCeeEE
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRIC-GDPN--SVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVR 248 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~d~~--~~kg~aFV~F~~~~~A~~Al~-l~--g~~i~g~~l~ 248 (365)
...++|||+|||+++++++|+++|.+||. |.++.++ .++. .++|||||+|.+.++|.+|++ |+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 6665 479999999999999999999 86 5899999999
Q ss_pred EeeCCCC
Q 017846 249 VLPSKTA 255 (365)
Q Consensus 249 V~~a~~~ 255 (365)
|.++++.
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9999754
No 198
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=125.49 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=72.6
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~ 352 (365)
..++|||+|||+.+|+++|+++|++ ||.|.+|.|+++. +.++|||||+|.+.++|.+|+.++|..|+|+.|. |.+++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~-V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLL-ILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCE-EEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEE-EEEch
Confidence 4589999999999999999999999 6999999999876 7899999999999999999999999999999999 98764
Q ss_pred C
Q 017846 353 T 353 (365)
Q Consensus 353 ~ 353 (365)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 199
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=5.5e-17 Score=127.21 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC---CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEe
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP---NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~---~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~ 250 (365)
.....++|||+|||.++++++|+++|++|| |.+|+|+.++ +.++|||||+|.+.++|.+|+.|+|..+.|+.|+|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 345678999999999999999999999999 9999999986 347999999999999999999999999999999999
Q ss_pred eCCC
Q 017846 251 PSKT 254 (365)
Q Consensus 251 ~a~~ 254 (365)
+++.
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 9863
No 200
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.67 E-value=4.2e-17 Score=160.56 Aligned_cols=82 Identities=15% Similarity=0.293 Sum_probs=75.6
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
.+.++|||.|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+||. |||..|.|+.|. |.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~-V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL-VD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEE-EE
Confidence 35689999999999999999999999 6999999999885 6789999999999999999999 999999999999 99
Q ss_pred cCCCCCC
Q 017846 350 PSKTPVR 356 (365)
Q Consensus 350 ~a~~~~~ 356 (365)
|+++...
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9986543
No 201
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=125.00 Aligned_cols=78 Identities=32% Similarity=0.460 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
..++|||+|||..+++++|+++|++||.|..++++.++. .++|||||+|.+.++|.+|++ |+|..+.|++|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 457899999999999999999999999999999999864 469999999999999999998 99999999999999986
Q ss_pred C
Q 017846 254 T 254 (365)
Q Consensus 254 ~ 254 (365)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 202
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=3e-17 Score=125.94 Aligned_cols=76 Identities=28% Similarity=0.418 Sum_probs=69.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~ 255 (365)
++|||+|||.++++++|+++|++||.|.+++++.++. .++|||||+|.+.+ |.+|+. |||..+.|++|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5799999999999999999999999999999999874 57999999999999 999999 9999999999999998643
No 203
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=3.5e-16 Score=126.14 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=73.2
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
....++|||+|||..+++++|+++|++ ||.|..|++++++ +.++|||||+|.+.++|.+|++ |||..|+|++|+ |
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-V 114 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK-V 114 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC-E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE-E
Confidence 456789999999999999999999999 6999999999875 6789999999999999999999 999999999999 9
Q ss_pred ecCC
Q 017846 349 SPSK 352 (365)
Q Consensus 349 ~~a~ 352 (365)
.|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9875
No 204
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=127.38 Aligned_cols=77 Identities=30% Similarity=0.434 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~ 253 (365)
..++|||+|||.++++++|+++|+.||.|..|+|+.++. .++|||||+|.+.++|.+|+.|++..|.|+.|+|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 457899999999999999999999999999999999885 46999999999999999999999999999999999975
No 205
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=123.53 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=76.7
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|++++ +.++|||||+|.+.++|.+||..|+..|.|++|+ |.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~-V~~ 91 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID-PKP 91 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEB-CCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEE-EEE
Confidence 45689999999999999999999999 6999999999885 6789999999999999999998899999999999 999
Q ss_pred CCCCCCCC
Q 017846 351 SKTPVRPR 358 (365)
Q Consensus 351 a~~~~~~r 358 (365)
+++....+
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 98775443
No 206
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.8e-16 Score=119.20 Aligned_cols=75 Identities=25% Similarity=0.446 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+++++++|+++|++||.|.+|++++ +||||+|.+.++|.+|++ |+|..+.|++|+|.+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 45678899999999999999999999999999999985 499999999999999998 99999999999999997
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
..
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 207
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=125.43 Aligned_cols=82 Identities=12% Similarity=0.319 Sum_probs=75.0
Q ss_pred ccccEEEeeCCCCCCCHHHHH---HHhhhcCCceEEEEEeccCC-----CcceEEEEEeCCHHHHHHHHH-hCCceeCCe
Q 017846 273 MCSRTIYCTNIDKKVTQGDIK---LFFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMAESAIAALN-CSGAVLGSL 343 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~---~~F~~~~G~I~~v~i~~d~~-----~~kg~afV~F~~~~~A~~Al~-lng~~l~g~ 343 (365)
...++|||+|||+.+++++|+ ++|++ ||.|..|.|+++.. .++|||||+|.+.++|.+|++ |||..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 345899999999999999999 99999 69999999998863 567999999999999999999 999999999
Q ss_pred eeEEeecCCCCCC
Q 017846 344 PIRLVSPSKTPVR 356 (365)
Q Consensus 344 ~l~~V~~a~~~~~ 356 (365)
+|+ |.|+++...
T Consensus 92 ~l~-V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLK-ASLGTTKYC 103 (111)
T ss_dssp EEE-EESCCCCSC
T ss_pred EEE-EEecccccc
Confidence 999 999987753
No 208
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.3e-17 Score=120.23 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.++++|.+|++ ++ ..+.|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999999999999874 479999999999999999999 88 9999999999986
No 209
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=8.2e-16 Score=118.41 Aligned_cols=75 Identities=25% Similarity=0.352 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+++++++|+++|++||.|.+|++++ +||||+|.+.++|.+|++ ||+..+.|+.|+|.+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45678999999999999999999999999999999985 499999999999999998 99999999999999996
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
..
T Consensus 81 ~~ 82 (92)
T 2dgt_A 81 SR 82 (92)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 210
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=5.1e-16 Score=131.57 Aligned_cols=82 Identities=26% Similarity=0.257 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
.....++|||+|||.++++++|+++|++||.|..|+|+.++. .++|||||+|.++++|.+||+ |++..|.|++|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344678999999999999999999999999999999999875 368999999999999999999 99999999999999
Q ss_pred eCCCC
Q 017846 251 PSKTA 255 (365)
Q Consensus 251 ~a~~~ 255 (365)
|++..
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 99753
No 211
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=2.4e-16 Score=119.10 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=67.4
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
+.-|||+||++.+||++|+++|.+ ||+|.++++.. ++|||||+|.+.++|.+|+. ||+..+.|++|+ |.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~-V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIF-AESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE-EECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE-EEECC
Confidence 467999999999999999999999 59999999976 57899999999999999999 999999999999 99873
No 212
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=5.8e-17 Score=127.13 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=73.1
Q ss_pred cccEEEeeCCCC------CCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCC-e
Q 017846 274 CSRTIYCTNIDK------KVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGS-L 343 (365)
Q Consensus 274 ~~~~l~V~nLp~------~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g-~ 343 (365)
..++|||.|||. .+++++|+++|++ ||.|.+|+|++++ ++++|||||+|.+.++|.+|+. |||..|.| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 358999999999 9999999999999 6999999999887 6799999999999999999999 99999999 9
Q ss_pred eeEEeecCCC
Q 017846 344 PIRLVSPSKT 353 (365)
Q Consensus 344 ~l~~V~~a~~ 353 (365)
+|+ |.++++
T Consensus 84 ~l~-V~~a~~ 92 (100)
T 3ns6_A 84 RLF-LYTMKD 92 (100)
T ss_dssp BCE-EEESHH
T ss_pred EEE-EEECch
Confidence 999 999864
No 213
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=122.20 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=72.7
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLG 341 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~--------v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~ 341 (365)
...++|||+|||..+++++|+++|++ ||.|.. |+++.++ +.++|||||+|.+.++|.+|++ |||..|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 45689999999999999999999999 699999 9999875 6889999999999999999999 9999999
Q ss_pred CeeeEEeecCC
Q 017846 342 SLPIRLVSPSK 352 (365)
Q Consensus 342 g~~l~~V~~a~ 352 (365)
|++|+ |.+++
T Consensus 90 g~~l~-V~~A~ 99 (99)
T 2la6_A 90 GNPIK-VSFAT 99 (99)
T ss_dssp SSBCE-EEECC
T ss_pred CcEEE-EEecC
Confidence 99999 99874
No 214
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=122.22 Aligned_cols=84 Identities=25% Similarity=0.321 Sum_probs=73.8
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
....++|||+|||..+++++|+++|++ ||.| +++.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEK-ATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR-LE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSS-CSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE-EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE-EE
Confidence 345689999999999999999999999 6987 455553 6789999999999999999999 999999999999 99
Q ss_pred cCCCCCCCCCC
Q 017846 350 PSKTPVRPRAP 360 (365)
Q Consensus 350 ~a~~~~~~r~~ 360 (365)
++++...++..
T Consensus 87 ~a~~~~~~~~~ 97 (101)
T 2fc9_A 87 LQGPRGSPNSG 97 (101)
T ss_dssp ECSSCCCCCCC
T ss_pred EcCCCCCCCCC
Confidence 99988665543
No 215
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=5.5e-16 Score=128.71 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=78.2
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
....++|||+|||..+++++|+++|++ ||.|.+|+|++++ +.++|||||+|.+.++|.+|+. |||..|.|++|+ |
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v 116 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK-V 116 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE-E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE-E
Confidence 446789999999999999999999999 5999999999886 5789999999999999999999 999999999999 9
Q ss_pred ecCCCCCCCCC
Q 017846 349 SPSKTPVRPRA 359 (365)
Q Consensus 349 ~~a~~~~~~r~ 359 (365)
.++++....+.
T Consensus 117 ~~a~~~~~~~~ 127 (139)
T 1u6f_A 117 ALAASGHQRPG 127 (139)
T ss_dssp EESSCCCCCCC
T ss_pred EECCCCCCCCC
Confidence 99988755543
No 216
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=124.94 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeE-EEEecCC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD-CRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||+++++++|+++|++||.|.. |+|+.+. ++++|||||+|.++++|.+||+.++..+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 345689999999999999999999999999987 8888874 45799999999999999999998999999999999997
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
..
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 53
No 217
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.6e-16 Score=123.52 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=77.3
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVS 349 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~ 349 (365)
....++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+||..++..|.|++|+ |.
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~-V~ 101 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVE-PK 101 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEE-EE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEE-EE
Confidence 345689999999999999999999999 6999999999885 6789999999999999999999999999999999 99
Q ss_pred cCCCCCCCC
Q 017846 350 PSKTPVRPR 358 (365)
Q Consensus 350 ~a~~~~~~r 358 (365)
++++....+
T Consensus 102 ~a~~~~~~~ 110 (116)
T 1x4b_A 102 RAVAREESG 110 (116)
T ss_dssp CCSSCCCCC
T ss_pred ECCCCccCC
Confidence 998775544
No 218
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=2.6e-16 Score=128.48 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++||.|.+|.|+.++. .++|||||+|.+.++|.+|++ |||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34567899999999999999999999999999999999863 469999999999999999998 999999999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
+...
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8643
No 219
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.66 E-value=5.1e-17 Score=120.17 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeC
Q 017846 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a 252 (365)
+|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|+++++..+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999874 4699999999999999999999999999999999875
No 220
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=1.4e-16 Score=123.27 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
..++|||+|||+++++++|+++|++||.|..++++.++. .++|||||+|.++++|.+|++ ||+..+.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 457899999999999999999999999999888888764 469999999999999999998 99999999999999874
No 221
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=122.13 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+++++++|+++|++||.|..|+++++ +|||||+|.+.++|.+|++ |+|..+.|++|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 446689999999999999999999999999999999875 5899999999999999998 99999999999999986
Q ss_pred C
Q 017846 254 T 254 (365)
Q Consensus 254 ~ 254 (365)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 222
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=5.9e-16 Score=122.56 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=73.5
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
..+.++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-V~ 103 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN-IQ 103 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE-EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE-EE
Confidence 345689999999999999999999999 6999999999886 6789999999999999999999 999999999999 99
Q ss_pred cCC
Q 017846 350 PSK 352 (365)
Q Consensus 350 ~a~ 352 (365)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 223
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=121.65 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||+++++++|+++|++||.| +++.+. +.++|||||+|.++++|.+|++ |++..+.|++|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4567899999999999999999999999987 566653 4579999999999999999999 9999999999999999
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
+..
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 224
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=129.32 Aligned_cols=78 Identities=29% Similarity=0.400 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++||.|..++++.++. .++|||||+|.+.++|.+|++ |+|..+.|++|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999864 469999999999999999998 999999999999988
Q ss_pred C
Q 017846 252 S 252 (365)
Q Consensus 252 a 252 (365)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 225
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.6e-16 Score=118.01 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=72.8
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...++|||+|||..+++++|+++|++ ||.|..|.++++ ||||+|.+.++|.+|+. |||..|.|++|+ |.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIVKD------YAFVHMERAEDAVEAIRGLDNTEFQGKRMH-VQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEECSS------EEEEEESCHHHHHHHHHHHTTEEETTEEEE-EEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEECC------EEEEEECCHHHHHHHHHHhCCCeeCCcEEE-EEEc
Confidence 45689999999999999999999999 699999999754 99999999999999999 999999999999 9999
Q ss_pred CCCCCCCCC
Q 017846 352 KTPVRPRAP 360 (365)
Q Consensus 352 ~~~~~~r~~ 360 (365)
++....++.
T Consensus 80 ~~~~~~~~~ 88 (92)
T 2dgt_A 80 TSRLRTASG 88 (92)
T ss_dssp SCCCSCCCC
T ss_pred cCCCCCCCC
Confidence 887665543
No 226
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=128.44 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 176 VIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
...++|||+|||+.+++++|+ ++|++||.|.+|.+..+ +.+||||||+|.+.++|.+|++ |||..+.|++|+|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 356799999999999999876 69999999999988653 4579999999999999999998 99999999999999
Q ss_pred eCCC
Q 017846 251 PSKT 254 (365)
Q Consensus 251 ~a~~ 254 (365)
|++.
T Consensus 106 ~a~~ 109 (127)
T 2a3j_A 106 FSET 109 (127)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9863
No 227
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=4.8e-16 Score=123.67 Aligned_cols=76 Identities=29% Similarity=0.464 Sum_probs=69.9
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
......++|||+|||.++++++|+++|++||.|..|+++ +|||||+|.+.++|.+|++ |+|..+.|++|.|.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345567899999999999999999999999999999998 5899999999999999998 999999999999999
Q ss_pred CCC
Q 017846 252 SKT 254 (365)
Q Consensus 252 a~~ 254 (365)
++.
T Consensus 100 a~~ 102 (108)
T 2jvo_A 100 SKL 102 (108)
T ss_dssp CSC
T ss_pred ecC
Confidence 864
No 228
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=121.65 Aligned_cols=77 Identities=26% Similarity=0.371 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+++++++|+++|++||.|. ++++.+ .++|||||+|.+.++|.+|++ |||..+.|++|+|.+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 44578999999999999999999999999997 677764 467999999999999999998 99999999999999986
Q ss_pred C
Q 017846 254 T 254 (365)
Q Consensus 254 ~ 254 (365)
.
T Consensus 93 ~ 93 (97)
T 2e5j_A 93 Q 93 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 229
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=4.5e-16 Score=121.43 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=70.0
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCce--eCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAV--LGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~--l~g~~l~~V 348 (365)
..++++|||+|||+.+|+++|+++|++ ||.|.+|.++++ ||||||+|++.++|.+|++ |++.. +.|++|+ |
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~-V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF-V 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE-E
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE-E
Confidence 346789999999999999999999999 599999999874 5799999999999999999 99875 7899999 9
Q ss_pred ecCCCC
Q 017846 349 SPSKTP 354 (365)
Q Consensus 349 ~~a~~~ 354 (365)
.++++.
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999864
No 230
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=8e-16 Score=119.91 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=69.0
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 174 DEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
.....++|||+|||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|+. ++|..+.|++|+|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 344678999999998 99999999999999999999994 5899999999999999999 999999999999999
Q ss_pred CCC
Q 017846 252 SKT 254 (365)
Q Consensus 252 a~~ 254 (365)
++.
T Consensus 92 a~~ 94 (97)
T 2xnq_A 92 SSS 94 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 231
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=131.85 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeE--EEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCc----eeCCe
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--CRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGT----MLGFY 245 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~----~i~g~ 245 (365)
....++|||+|||+++++++|+++|++||.|.. |+|++|+. .+||||||+|.+. +|.+|+. |||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346789999999999999999999999999977 99999984 4799999999999 9999998 9999 99999
Q ss_pred eEEEeeCCCC
Q 017846 246 PVRVLPSKTA 255 (365)
Q Consensus 246 ~l~V~~a~~~ 255 (365)
+|+|.+++..
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998754
No 232
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.9e-16 Score=118.74 Aligned_cols=77 Identities=32% Similarity=0.396 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCCC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~~ 255 (365)
...++|||+|||+++++++|+++|++||.|.+| +.++.+.+ ||||+|.+.++|.+|++|++..+.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 356799999999999999999999999999987 55555445 999999999999999999999999999999998643
No 233
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=119.12 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=67.2
Q ss_pred cEEEeeCCCCCC------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCe-eeEE
Q 017846 276 RTIYCTNIDKKV------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL-PIRL 347 (365)
Q Consensus 276 ~~l~V~nLp~~~------te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~-~l~~ 347 (365)
++|||+|||..+ ++++|+++|++ ||.|.+|.++++.+.++|||||+|.+.++|.+|+. |||..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~- 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR- 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC-
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE-
Confidence 689999999999 78999999999 69999999987668899999999999999999999 999999999 898
Q ss_pred ee
Q 017846 348 VS 349 (365)
Q Consensus 348 V~ 349 (365)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 234
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-15 Score=119.08 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=75.1
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|+.++ +.++|||||+|.+.++|.+|+. ++..|.|++|+ |.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~-v~~ 89 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCD-CKL 89 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEE-EEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEE-EEe
Confidence 45689999999999999999999999 5999999999885 6889999999999999999999 57799999999 999
Q ss_pred CCCCCCCC
Q 017846 351 SKTPVRPR 358 (365)
Q Consensus 351 a~~~~~~r 358 (365)
+++.....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqg_A 90 PNSKQSQD 97 (103)
T ss_dssp CCTTCCCC
T ss_pred cCCCCcCC
Confidence 98865544
No 235
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=123.61 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=73.4
Q ss_pred ccccEEEeeCCCCCC------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCe-e
Q 017846 273 MCSRTIYCTNIDKKV------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL-P 344 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~------te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~-~ 344 (365)
...++|||+|||..+ ++++|+++|++ ||.|..|.|++..+.++|||||+|.+.++|.+|+. |||..|.|+ +
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346899999999999 78999999999 59999999987668899999999999999999999 999999998 9
Q ss_pred eEEeecCCCC
Q 017846 345 IRLVSPSKTP 354 (365)
Q Consensus 345 l~~V~~a~~~ 354 (365)
|+ |.++...
T Consensus 92 l~-V~~a~~~ 100 (105)
T 2nlw_A 92 FR-VNLFTDF 100 (105)
T ss_dssp EE-EECSCCC
T ss_pred EE-EEEcchH
Confidence 99 9998754
No 236
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-16 Score=120.76 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=72.4
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
.+.++|||+|||..+++++|+++|++ ||.|..|.++.++ +.++|||||+|.+.++|.+|+. |||..|.|+.|+ ++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~-~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK-QS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC-SS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe-ec
Confidence 35689999999999999999999999 6999999999875 6789999999999999999999 999999999999 88
Q ss_pred cCC
Q 017846 350 PSK 352 (365)
Q Consensus 350 ~a~ 352 (365)
++.
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 237
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=125.73 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~ 255 (365)
..++|||+|||+++++++|+++|++||.|..|+|+. ++|||||+|.+.++|.+|++ |||..+.|++|.|.|+...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 457899999999999999999999999999999875 45899999999999999998 9999999999999998653
No 238
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.65 E-value=4.1e-16 Score=128.09 Aligned_cols=81 Identities=23% Similarity=0.251 Sum_probs=75.3
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
..+.++|||+|||..+++++|+++|++ ||.|..|+|++++ +.++|||||+|.+.++|.+|+. |||..|.|++|+ |
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~-V 120 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR-V 120 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE-E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE-E
Confidence 345689999999999999999999999 6999999999886 5789999999999999999999 999999999999 9
Q ss_pred ecCCCC
Q 017846 349 SPSKTP 354 (365)
Q Consensus 349 ~~a~~~ 354 (365)
.|+++.
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998764
No 239
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.8e-16 Score=123.49 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=69.9
Q ss_pred ccccEEEeeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC--ceeCCeeeEEe
Q 017846 273 MCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG--AVLGSLPIRLV 348 (365)
Q Consensus 273 ~~~~~l~V~nLp~-~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng--~~l~g~~l~~V 348 (365)
.+.++|||+|||+ .+++++|+++|++ ||.|.+|.|++++ |||||+|++.++|..|++ ||+ ..|.|++|+ |
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~-fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~-V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEP-FGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR-V 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGG-GSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE-E
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHh-cCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE-E
Confidence 3568999999999 9999999999999 5999999998764 699999999999999999 886 459999999 9
Q ss_pred ecCCCCCC
Q 017846 349 SPSKTPVR 356 (365)
Q Consensus 349 ~~a~~~~~ 356 (365)
.++++..+
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986543
No 240
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=3.9e-16 Score=124.40 Aligned_cols=77 Identities=22% Similarity=0.383 Sum_probs=70.3
Q ss_pred cccEEEeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 274 CSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 274 ~~~~l~V~nLp~~-~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
..++|||+|||.. +++++|+++|++ ||.|..|.+ ++|||||+|.+.++|.+|+. |||..|.|++|+ |.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD-INMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC-EEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE-EEEC
Confidence 4589999999999 999999999999 599999999 46799999999999999998 999999999999 9999
Q ss_pred CCCCCCC
Q 017846 352 KTPVRPR 358 (365)
Q Consensus 352 ~~~~~~r 358 (365)
+++...+
T Consensus 98 ~~~~~~~ 104 (110)
T 1wf1_A 98 GEPKPDR 104 (110)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 8764444
No 241
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=1.4e-15 Score=119.66 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
...++|||+|||+++++++|+++|++||.|..|++++ |||||+|.+.++|.+|++ |++..+.|++|.|.+++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 3567899999999999999999999999999999974 599999999999999999 999999999999999975
Q ss_pred CC
Q 017846 255 AI 256 (365)
Q Consensus 255 ~~ 256 (365)
..
T Consensus 83 ~~ 84 (103)
T 2dgu_A 83 PD 84 (103)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 242
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.64 E-value=3.6e-16 Score=127.57 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=77.1
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
...++|||.|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..|.|+.|+ |.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~ 97 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS-VD 97 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE-EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE-EE
Confidence 45689999999999999999999999 6999999999885 6789999999999999999999 999999999999 99
Q ss_pred cCCCCCCCCC
Q 017846 350 PSKTPVRPRA 359 (365)
Q Consensus 350 ~a~~~~~~r~ 359 (365)
|+++...++.
T Consensus 98 ~a~~~~~~~~ 107 (126)
T 3ex7_B 98 WCFVRGPPKG 107 (126)
T ss_dssp ESEESSSCCC
T ss_pred EecCCCCCCC
Confidence 9976655443
No 243
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=7.6e-17 Score=123.62 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=69.8
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
++|||+|||..+++++|+++|++ ||.|.+|.++++. +.++|||||+|.+.+ |.+|+. |||..+.|++|+ |.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~-V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIR-VTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCS-EEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEE-EEEcC
Confidence 68999999999999999999999 5999999999886 678999999999999 999999 999999999999 99998
Q ss_pred CCCCCCCC
Q 017846 353 TPVRPRAP 360 (365)
Q Consensus 353 ~~~~~r~~ 360 (365)
+...+..+
T Consensus 79 ~~~~~~~~ 86 (90)
T 2ki2_A 79 PKKSLEHH 86 (90)
T ss_dssp --------
T ss_pred CCCCCCCC
Confidence 87555443
No 244
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-15 Score=117.77 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhC--CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTC--GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++| |.|..++++ +|||||+|.+.++|.+|+. |||..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999 999999876 4799999999999999999 999999999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
+++.
T Consensus 86 a~~~ 89 (99)
T 2cpd_A 86 AKPV 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9754
No 245
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=121.83 Aligned_cols=80 Identities=21% Similarity=0.175 Sum_probs=72.7
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
...++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~-V~ 90 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK-LV 90 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE-EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE-EE
Confidence 34589999999999999999999999 6999888777664 5789999999999999999998 999999999999 99
Q ss_pred cCCCC
Q 017846 350 PSKTP 354 (365)
Q Consensus 350 ~a~~~ 354 (365)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98765
No 246
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=3.5e-16 Score=122.60 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=72.3
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTP 354 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~ 354 (365)
++|||+|||..+++++|+++|++ ||.|..|.++++ ++|||||+|.+.++|.+|+. |||..+.|++|+ |.++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVR-VELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCE-EEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEE-EEEccCC
Confidence 47999999999999999999999 599999999987 77899999999999999999 999999999999 9999887
Q ss_pred CCCC
Q 017846 355 VRPR 358 (365)
Q Consensus 355 ~~~r 358 (365)
....
T Consensus 76 ~~~~ 79 (101)
T 2hvz_A 76 PRRS 79 (101)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6443
No 247
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-15 Score=120.92 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=72.3
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCC-----eeeEE
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS-----LPIRL 347 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g-----~~l~~ 347 (365)
..++|||.|||..+++++|+++|++ ||.|..|.|+.+ |||||+|.+.++|.+||+ |||..|.| ++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~- 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR- 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE-
Confidence 4589999999999999999999999 599999999987 799999999999999999 99999999 9999
Q ss_pred eecCCCCCCCC
Q 017846 348 VSPSKTPVRPR 358 (365)
Q Consensus 348 V~~a~~~~~~r 358 (365)
|.++++....+
T Consensus 87 V~~a~~~~~~~ 97 (108)
T 1x4c_A 87 VKVDGPRSPSY 97 (108)
T ss_dssp EEESSCCSCCC
T ss_pred EEeCCCCCCCC
Confidence 99998865544
No 248
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=3.8e-16 Score=124.74 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=70.0
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...+|||+|||+.+++++|+++|++ || .|..+.|..+ .++|||||+|.+.++|.+|++ |||..|.|++|+ |.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~-V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT-VERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE-EEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE-EEEC
Confidence 3579999999999999999999999 59 8999998643 478999999999999999999 999999999999 9998
Q ss_pred CCC
Q 017846 352 KTP 354 (365)
Q Consensus 352 ~~~ 354 (365)
+.+
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 765
No 249
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=117.18 Aligned_cols=79 Identities=23% Similarity=0.303 Sum_probs=71.7
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...++|||+|||..+++++|+++|++ ||.|..|.++++ ||||+|.+.++|.+|+. |||..|.|++|+ |.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVVKD------YAFVHMEKEADAKAAIAQLNGKEVKGKRIN-VELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEECSS------CEEEEESCHHHHHHHHHHHTTCEETTEECE-EEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEECC------EEEEEECCHHHHHHHHHHhCCCEECCcEEE-EEEC
Confidence 45689999999999999999999999 599999999854 99999999999999999 999999999999 9999
Q ss_pred CCCCCCCC
Q 017846 352 KTPVRPRA 359 (365)
Q Consensus 352 ~~~~~~r~ 359 (365)
++...++.
T Consensus 79 ~~~~~~~~ 86 (90)
T 2dnp_A 79 TKGQKKSG 86 (90)
T ss_dssp CCCCCCCS
T ss_pred CCCCCCCC
Confidence 88754443
No 250
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.64 E-value=1.2e-15 Score=129.19 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=77.0
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
...++|||.|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+||. ||+..|.|++|+ |.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~-V~ 114 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR-TD 114 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE-EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE-EE
Confidence 45689999999999999999999999 5999999999886 5789999999999999999999 999999999999 99
Q ss_pred cCCCCCCCC
Q 017846 350 PSKTPVRPR 358 (365)
Q Consensus 350 ~a~~~~~~r 358 (365)
|+++....+
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 998765443
No 251
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=2.6e-16 Score=122.29 Aligned_cols=79 Identities=24% Similarity=0.409 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
....++|||+|||+++++++|+ ++|++||.|.+|+++.. +.++|||||+|.+.++|.+|++ |+|..+.|++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3467899999999999999999 99999999999998742 3457999999999999999998 9999999999999
Q ss_pred eeCCC
Q 017846 250 LPSKT 254 (365)
Q Consensus 250 ~~a~~ 254 (365)
.+++.
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99864
No 252
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=7.3e-16 Score=130.79 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=72.3
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G--~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
..++|||+|||..+++++|+++|++ || .|..|+|+.|+ +.++|||||+|.+.++|.+||. |||..|.|++|+ |
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~-V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD-V 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE-E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE-E
Confidence 4579999999999999999999999 69 99999999885 7899999999999999999999 999999999999 9
Q ss_pred ecCCC
Q 017846 349 SPSKT 353 (365)
Q Consensus 349 ~~a~~ 353 (365)
.++.+
T Consensus 132 ~~a~~ 136 (156)
T 3n9u_C 132 RPATR 136 (156)
T ss_dssp EECCH
T ss_pred EEcCC
Confidence 99864
No 253
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=3.7e-16 Score=120.94 Aligned_cols=78 Identities=22% Similarity=0.187 Sum_probs=70.7
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
..++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..|.|++|+ |.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~-v~~ 91 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK-LSG 91 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE-EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE-EEe
Confidence 4589999999999999999999999 6999988887765 5789999999999999999999 999999999999 998
Q ss_pred CCC
Q 017846 351 SKT 353 (365)
Q Consensus 351 a~~ 353 (365)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 254
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=9.1e-16 Score=122.03 Aligned_cols=77 Identities=27% Similarity=0.512 Sum_probs=71.2
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
....++|||+|||..+++++|+++|++ ||.|..|.+. +|||||+|.+.++|.+|+. |||..|.|++|+ |.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~-V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE-VVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE-EES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE-EEE
Confidence 556799999999999999999999999 6999999997 5799999999999999999 999999999999 999
Q ss_pred CCCCCC
Q 017846 351 SKTPVR 356 (365)
Q Consensus 351 a~~~~~ 356 (365)
+++...
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987643
No 255
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=2.9e-16 Score=116.09 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=68.8
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a 351 (365)
+|||+|||..+++++|+++|++ ||.|..|.+++++ +.++|||||+|.+.++|.+|+++||..++|++|+ |.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~-v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE-CKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCE-EECC
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEE-EEeC
Confidence 4899999999999999999999 6999999999875 6789999999999999999999999999999999 9875
No 256
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-16 Score=123.40 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=75.1
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
..++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|.+|++ |||..|.|++|+ |.+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR-VDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE-EEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE-EEe
Confidence 4589999999999999999999999 6999999999875 6789999999999999999999 999999999999 999
Q ss_pred CCCCCC
Q 017846 351 SKTPVR 356 (365)
Q Consensus 351 a~~~~~ 356 (365)
+++...
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987644
No 257
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=126.44 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCC---eeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEe
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~ 250 (365)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.++ +.++|||||+|.+.++|.+||++++..++|+.|+|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 446788999999999999999999999988 8999999887 457999999999999999999999999999999999
Q ss_pred eCC
Q 017846 251 PSK 253 (365)
Q Consensus 251 ~a~ 253 (365)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 975
No 258
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=1.2e-15 Score=121.42 Aligned_cols=82 Identities=20% Similarity=0.213 Sum_probs=71.9
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVS 349 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~ 349 (365)
....++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|+...+..|+|+.|+ |.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~-V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID-PK 99 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEE-EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEE-EE
Confidence 445689999999999999999999999 6999999999886 6889999999999999999999335999999999 99
Q ss_pred cCCCCC
Q 017846 350 PSKTPV 355 (365)
Q Consensus 350 ~a~~~~ 355 (365)
++.+..
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 988653
No 259
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.4e-16 Score=119.27 Aligned_cols=77 Identities=16% Similarity=0.283 Sum_probs=71.1
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeC--CeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG--SLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~--g~~l~~V~ 349 (365)
.+.++|||.|||..+++++|+++|++ ||.|..|.+.++ +|||||+|.+.++|.+|++ |||..|. |++|+ |.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~-V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR-VD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE-EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE-EE
Confidence 45689999999999999999999999 699999999875 5799999999999999999 9999999 99999 99
Q ss_pred cCCCCC
Q 017846 350 PSKTPV 355 (365)
Q Consensus 350 ~a~~~~ 355 (365)
|+++..
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998753
No 260
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=1.1e-15 Score=121.72 Aligned_cols=73 Identities=25% Similarity=0.479 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 176 VIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 176 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
...++|||+|||++ +++++|+++|++||.|.+|++ ++|||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 34579999999999 999999999999999999999 45899999999999999997 99999999999999986
Q ss_pred C
Q 017846 254 T 254 (365)
Q Consensus 254 ~ 254 (365)
.
T Consensus 99 ~ 99 (110)
T 1wf1_A 99 E 99 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 261
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.5e-16 Score=120.99 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=68.6
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||+ .+++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++ |+|..+.|++|+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 34678999999998 99999999999999999999995 5899999999999999999 9999999999999998
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
+..
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 643
No 262
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=116.93 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=72.8
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~ 352 (365)
..++|||+|||..+++++|+++|++ | .|..|.|+++. +.++|||||+|.+.++|.+|+.|||..|+|++|+ |.+++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~-v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIE-VFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEE-EEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhh-C-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEE-EEECC
Confidence 4589999999999999999999999 6 89999999875 6789999999999999999999999999999999 99987
Q ss_pred CC
Q 017846 353 TP 354 (365)
Q Consensus 353 ~~ 354 (365)
+.
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 263
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=120.89 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=72.0
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCc--eeCCeeeEEee
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGA--VLGSLPIRLVS 349 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~--~l~g~~l~~V~ 349 (365)
.+.++|||+|||..+++++|+++|++ ||.|..|.++++ +|||||+|.+.++|.+|+. |++. .|.|++|+ |.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~-V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF-FN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE-EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE-EE
Confidence 45689999999999999999999999 699999999875 5799999999999999999 8764 59999999 99
Q ss_pred cCCCCCCCCC
Q 017846 350 PSKTPVRPRA 359 (365)
Q Consensus 350 ~a~~~~~~r~ 359 (365)
|+++...+++
T Consensus 87 ~a~~~~~~~~ 96 (104)
T 1wex_A 87 YSTSKRITRP 96 (104)
T ss_dssp ECSSSSCCCS
T ss_pred EccCccccCC
Confidence 9987765554
No 264
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.5e-16 Score=122.01 Aligned_cols=84 Identities=21% Similarity=0.175 Sum_probs=75.2
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a 351 (365)
...++|||+|||+.+++++|+++|++ ||. ..|+|+.++ ++++|||||+|.+.++|.+||.+|+..|.|+.|+ |.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~-V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSP-LNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE-LFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCS-CCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCE-EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEE-EEEC
Confidence 44589999999999999999999999 695 499999886 6899999999999999999999999999999999 9998
Q ss_pred CCCCCCCC
Q 017846 352 KTPVRPRA 359 (365)
Q Consensus 352 ~~~~~~r~ 359 (365)
.++...+.
T Consensus 90 ~~~~~~~~ 97 (102)
T 1wez_A 90 STAGTSGS 97 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 87765544
No 265
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=129.16 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=75.1
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEE--EEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCc----eeCC
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--LRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGA----VLGS 342 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~--v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~----~l~g 342 (365)
....++|||+|||+.+++++|+++|++ ||.|.. |+|++|+ +.++|||||+|.+. +|.+|+. |||. .|.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 456789999999999999999999999 599977 9999887 68999999999999 9999999 9999 9999
Q ss_pred eeeEEeecCCCCCC
Q 017846 343 LPIRLVSPSKTPVR 356 (365)
Q Consensus 343 ~~l~~V~~a~~~~~ 356 (365)
++|+ |.++++..+
T Consensus 98 r~l~-V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTIN-VEFAKGSKR 110 (131)
T ss_dssp CCCC-CEECCCSCC
T ss_pred EEEE-EEECCCCCC
Confidence 9999 999987633
No 266
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.9e-16 Score=119.02 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=69.6
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCc-eEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC-ceeCCeeeEEeec
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGE-VQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG-AVLGSLPIRLVSP 350 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~-I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng-~~l~g~~l~~V~~ 350 (365)
..++|||+|||..+++++|+++|++ ||. |..+.+. ++|||||+|.+.++|.+|++ ||| ..|.|++|+ |.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~-v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME-VDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE-EEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE-EEE
Confidence 4589999999999999999999999 699 6666663 46799999999999999999 999 999999999 999
Q ss_pred CCCCCCCCC
Q 017846 351 SKTPVRPRA 359 (365)
Q Consensus 351 a~~~~~~r~ 359 (365)
+++......
T Consensus 80 a~~~~~~~~ 88 (93)
T 2cqh_A 80 SVSKKLRSS 88 (93)
T ss_dssp CCCCCCCCC
T ss_pred ccCccccCC
Confidence 988755443
No 267
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=121.02 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=73.7
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCc-eEEEEEe-ccC--CCcceEEEEEeCCHHHHHHHHH-hC--CceeCCeeeE
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGE-VQRLRLL-GDY--QHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIR 346 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~-I~~v~i~-~d~--~~~kg~afV~F~~~~~A~~Al~-ln--g~~l~g~~l~ 346 (365)
..++|||+|||..+++++|+++|++ ||. |..|.++ .+. +.++|||||+|.+.++|.+|+. || +..+.|++|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 4589999999999999999999999 598 9999998 555 4789999999999999999999 96 5899999999
Q ss_pred EeecCCCCCCC
Q 017846 347 LVSPSKTPVRP 357 (365)
Q Consensus 347 ~V~~a~~~~~~ 357 (365)
|.|+++...+
T Consensus 86 -V~~a~~~~~~ 95 (109)
T 2dis_A 86 -VDWAEPEIDV 95 (109)
T ss_dssp -EEESCSSCST
T ss_pred -EEEcCCCCCc
Confidence 9999876543
No 268
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.7e-16 Score=118.75 Aligned_cols=76 Identities=22% Similarity=0.249 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCC-eeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCC-ceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG-TMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g-~~i~g~~l~V~~ 251 (365)
....++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++ ||| ..+.|++|+|.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 345678999999999999999999999999 6666663 35899999999999999998 999 999999999999
Q ss_pred CCCC
Q 017846 252 SKTA 255 (365)
Q Consensus 252 a~~~ 255 (365)
++..
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 8643
No 269
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=125.73 Aligned_cols=80 Identities=30% Similarity=0.555 Sum_probs=74.4
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
...++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+.|||..|.|+.|+ |.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~-V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPII-VQA 100 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEE-EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEE-EEe
Confidence 35689999999999999999999999 6999999999887 5789999999999999999999999999999999 999
Q ss_pred CCCC
Q 017846 351 SKTP 354 (365)
Q Consensus 351 a~~~ 354 (365)
+++.
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8764
No 270
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=1.1e-16 Score=133.04 Aligned_cols=80 Identities=23% Similarity=0.212 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+++|+++|+++|++|| |++|+|+.|+. +++|||||+|.++++|++||++++..|.|+.|+|.++.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 34567899999999999999999999999 77999999874 57999999999999999999999999999999999986
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 271
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=122.42 Aligned_cols=79 Identities=23% Similarity=0.295 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCe----eEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
....++|||+|||+++++++|+++|++||.| ..+++. .+.++|||||+|.+.++|.+|++ |+|..+.|++|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999998 556655 35578999999999999999998 9999999999999
Q ss_pred eeCCCC
Q 017846 250 LPSKTA 255 (365)
Q Consensus 250 ~~a~~~ 255 (365)
.+++..
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 999754
No 272
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=2.3e-15 Score=117.29 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=70.0
Q ss_pred cccccEEEeeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 272 EMCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 272 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
..+.++|||+|||. .+++++|+++|++ ||.|..|.+. +|||||+|.+.++|.+|+. |||..+.|++|+ |.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~-V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI-LE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE-EE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE-EE
Confidence 44678999999998 9999999999999 5999999994 5799999999999999999 999999999999 99
Q ss_pred cCCCCC
Q 017846 350 PSKTPV 355 (365)
Q Consensus 350 ~a~~~~ 355 (365)
++++..
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 988653
No 273
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.9e-16 Score=124.61 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hC--CceeCCeeEEEe
Q 017846 175 EVIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVL 250 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~--g~~i~g~~l~V~ 250 (365)
....++|||+|||++ +++++|+++|++||.|.+|+|++. ||||||+|.+.++|.+|++ |+ +..+.|++|+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 445789999999998 999999999999999999999854 5899999999999999998 75 456999999999
Q ss_pred eCCC
Q 017846 251 PSKT 254 (365)
Q Consensus 251 ~a~~ 254 (365)
+++.
T Consensus 98 ~a~~ 101 (112)
T 1x4f_A 98 LSEK 101 (112)
T ss_dssp EECS
T ss_pred ECcc
Confidence 9864
No 274
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=6.2e-16 Score=119.96 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|||+.+++++|+++|++||.|..+ ...+.++|||||+|.+.++|.+|++ |+|..+.|++|+|.++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 3456899999999999999999999999988766 3335579999999999999999999 99999999999999986
Q ss_pred C
Q 017846 254 T 254 (365)
Q Consensus 254 ~ 254 (365)
.
T Consensus 90 ~ 90 (96)
T 1fjc_A 90 E 90 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 275
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=9.2e-16 Score=117.21 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~ 254 (365)
..++|||+|||+++++++|+++|++| .|.++++. .++|||||+|.++++|.+|++ |||..+.|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46789999999999999999999999 99999985 567999999999999999999 999999999999999864
No 276
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=2.4e-15 Score=118.36 Aligned_cols=80 Identities=24% Similarity=0.414 Sum_probs=72.6
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
+.++|||+|||..+++++|+++|++ ||.|..|.+++ +||||+|.+.++|.+|+. |||..|.|++|+ |.+++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIE-IVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEE-EEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEE-EEEcC
Confidence 4589999999999999999999999 59999999974 499999999999999999 999999999999 99998
Q ss_pred CCCCCCCCC
Q 017846 353 TPVRPRAPR 361 (365)
Q Consensus 353 ~~~~~r~~~ 361 (365)
+....+..+
T Consensus 82 ~~~~~~~~~ 90 (103)
T 2dgu_A 82 PPDQKRKER 90 (103)
T ss_dssp CCCCCCCCC
T ss_pred CCcccchhh
Confidence 876655433
No 277
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.3e-15 Score=119.25 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=69.8
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...++|||+|||..+++++|+++|++ ||.|.+|++.+ ++|||||+|.+.++|.+|+. |||..|.|++|+ |.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~-V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR-TGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECC-CCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE-EEec
Confidence 44689999999999999999999999 69999999984 56799999999999999999 999999999999 9998
Q ss_pred CC
Q 017846 352 KT 353 (365)
Q Consensus 352 ~~ 353 (365)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 76
No 278
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.8e-15 Score=115.19 Aligned_cols=79 Identities=27% Similarity=0.415 Sum_probs=71.7
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcC--CceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVC--GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~--G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
....++|||+|||..+++++|+++|++ | |.|..|.+. +|||||+|.+.++|.+|+. |||..|.|++|+ |
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE-V 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE-E
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE-E
Confidence 345689999999999999999999999 8 899999885 4699999999999999999 999999999999 9
Q ss_pred ecCCCCCCCC
Q 017846 349 SPSKTPVRPR 358 (365)
Q Consensus 349 ~~a~~~~~~r 358 (365)
.++++....+
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2cpd_A 84 TLAKPVDKDS 93 (99)
T ss_dssp ECCCCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999875543
No 279
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-15 Score=120.70 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=73.4
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCcee--------CC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVL--------GS 342 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l--------~g 342 (365)
...++|||+|||..+++++|+++|++ ||.|..|+|+++. +.++|||||+|.+.++|.+|+. |||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45689999999999999999999999 6999999999886 6789999999999999999999 999999 57
Q ss_pred eeeEEeecCCCC
Q 017846 343 LPIRLVSPSKTP 354 (365)
Q Consensus 343 ~~l~~V~~a~~~ 354 (365)
++|. |.|++++
T Consensus 102 ~~l~-v~~a~p~ 112 (114)
T 1x5o_A 102 EPLL-CKFSGPS 112 (114)
T ss_dssp SCBE-EEECCCS
T ss_pred Ccee-EEccCCC
Confidence 8899 9998854
No 280
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=117.95 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=72.6
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
....++|||+|||..+++++|+++|++ ||.|..+ ...+.++|||||+|.+.++|.+|+. |||..|.|++|+ |.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS-LYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE-EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE-EEE
Confidence 345689999999999999999999999 5988776 4456789999999999999999999 999999999999 999
Q ss_pred CCCCCCCC
Q 017846 351 SKTPVRPR 358 (365)
Q Consensus 351 a~~~~~~r 358 (365)
+++....+
T Consensus 88 a~~~~~~~ 95 (96)
T 1fjc_A 88 TGEKGGTR 95 (96)
T ss_dssp CSSSCCCC
T ss_pred cCCCCCCC
Confidence 98765443
No 281
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5e-16 Score=126.39 Aligned_cols=78 Identities=22% Similarity=0.172 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCe----eEEEEecCC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEe
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~ 250 (365)
....+|||+|||+++|+++|+++|++||.| ..|+|+.++ ++++|||||+|.++++|.+||+.+++.|.|+.|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 356789999999999999999999999975 689999886 457999999999999999999989999999999998
Q ss_pred eCC
Q 017846 251 PSK 253 (365)
Q Consensus 251 ~a~ 253 (365)
.+.
T Consensus 101 ~a~ 103 (123)
T 2dha_A 101 RST 103 (123)
T ss_dssp EEC
T ss_pred ECC
Confidence 864
No 282
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=4.7e-16 Score=121.83 Aligned_cols=80 Identities=25% Similarity=0.354 Sum_probs=71.9
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~---~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V 348 (365)
....++|||+|||..+++++|+++|++ || |.+|.|+++. ++++|||||+|.+.++|.+|+.|||..|+|+.|+ |
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~-V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIR-V 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCC-C
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEE-E
Confidence 345689999999999999999999999 59 9999999875 6789999999999999999999999999999999 9
Q ss_pred ecCCCC
Q 017846 349 SPSKTP 354 (365)
Q Consensus 349 ~~a~~~ 354 (365)
.++++.
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998765
No 283
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=4.7e-16 Score=126.91 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCee--EEEEecCC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--DCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 251 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~ 251 (365)
....++|||+|||+++|+++|+++|++| .|+ +|+|+.|+ ++++|||||+|.++++|.+||++++..|.|+.|+|.+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 3456789999999999999999999999 677 89999887 4579999999999999999999888999999999988
Q ss_pred CC
Q 017846 252 SK 253 (365)
Q Consensus 252 a~ 253 (365)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 284
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-16 Score=128.34 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||+++++++|+++|+.||.|..+.++.+. +.++|||||+|.+.++|.+||++|+..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 4456899999999999999999999999999885555543 34699999999999999999999999999999999997
Q ss_pred C
Q 017846 253 K 253 (365)
Q Consensus 253 ~ 253 (365)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 285
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=124.73 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=71.8
Q ss_pred ccccEEEeeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 017846 273 MCSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRL 347 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~----~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~ 347 (365)
.+.++|||+|||+.+++++|+ ++|++ ||.|.+|.+.+ .+.++|||||+|.+.++|..|+. |||..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~- 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASS-QGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV- 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhcc-CCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE-
Confidence 346899999999999999876 69999 59999998865 36789999999999999999999 999999999999
Q ss_pred eecCCCCC
Q 017846 348 VSPSKTPV 355 (365)
Q Consensus 348 V~~a~~~~ 355 (365)
|.|+++..
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998764
No 286
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=2.9e-16 Score=123.04 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~ 253 (365)
...++|||+|||+++++++|+++|++||.|.. .++.+. +.++|||||+|.+.++|.+|++|++..+.|+.|+|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35679999999999999999999999999887 555554 357999999999999999999999999999999999986
Q ss_pred C
Q 017846 254 T 254 (365)
Q Consensus 254 ~ 254 (365)
.
T Consensus 94 ~ 94 (101)
T 1fj7_A 94 G 94 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 287
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=117.74 Aligned_cols=79 Identities=28% Similarity=0.326 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
.....++|||+|||+++++++|+++|+.|+ .++++.++. .++|||||+|.++++|.+|++ |++..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678899999999999999999999874 677777763 469999999999999999998 99999999999999
Q ss_pred eCCCC
Q 017846 251 PSKTA 255 (365)
Q Consensus 251 ~a~~~ 255 (365)
++++.
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99753
No 288
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.61 E-value=2.3e-15 Score=128.81 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
...++|||+|||+.+++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|.+||. |||..|.|++|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3467899999999999999999999999999999999864 369999999999999999998 9999999999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
..
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 289
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=8e-16 Score=138.77 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCC--CeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 251 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~ 251 (365)
..++|||+|||+++|+++|+++|++|| .|.+|+|++|+. ++||||||+|.+.++|.+||+ ||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 999999999974 479999999999999999999 999999999999999
Q ss_pred CC
Q 017846 252 SK 253 (365)
Q Consensus 252 a~ 253 (365)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 290
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=2e-15 Score=115.74 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=62.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCce--eCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTM--LGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~--i~g~~l~V~~a 252 (365)
.....+|||+|||+++|+++|+++|++||.|.+|+|+++ +||||||+|.++++|.+ +++.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEc
Confidence 446789999999999999999999999999999999986 68999999999999984 44444 56999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
.+
T Consensus 82 ~~ 83 (89)
T 3d2w_A 82 EP 83 (89)
T ss_dssp C-
T ss_pred CC
Confidence 63
No 291
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.3e-15 Score=114.58 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=68.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
....++|||+|| ++++++|+++|++||.|.+|+|. .++|||||+|.+.++|.+|+. |++..+.|++|+|.+++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 446689999996 89999999999999999999995 456899999999999999997 99999999999999986
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
..
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 292
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=4.8e-16 Score=122.03 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~ 253 (365)
..++|||+|||+++++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 45789999999999999999999999999999999987 2369999999999999999999 9999999999999975
No 293
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=119.73 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=70.6
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKT 353 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~~ 353 (365)
..+|||+|||+.+++++|+++|++ | .|..|.|+.++ ++++|||||+|.+.++|.+||.+|+..|+|+.|. |..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~-V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVE-VSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEE-EEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE-EEECCc
Confidence 479999999999999999999999 6 79999999876 7899999999999999999999999999999999 887753
No 294
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=116.73 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEE-EecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR-ICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~-i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
...++|||+|||+++++++|+++|++||.|.+++ ++.++.+ |.|||+|.+.++|.+|+. |||..+.|++|+|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3567899999999999999999999999999994 8887654 449999999999999998 99999999999999986
Q ss_pred C
Q 017846 254 T 254 (365)
Q Consensus 254 ~ 254 (365)
+
T Consensus 91 ~ 91 (96)
T 2e44_A 91 D 91 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 295
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=4.4e-15 Score=123.11 Aligned_cols=78 Identities=27% Similarity=0.432 Sum_probs=72.1
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
....++|||+|||..+++++|+++|++ ||.|..|++++++ +.++|||||+|.+.++|.+|++ |||..|.|++|+ |
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-v 137 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR-V 137 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE-E
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE-E
Confidence 446789999999999999999999999 5999999999875 6789999999999999999999 999999999999 9
Q ss_pred ecC
Q 017846 349 SPS 351 (365)
Q Consensus 349 ~~a 351 (365)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 885
No 296
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=3.1e-16 Score=130.30 Aligned_cols=125 Identities=20% Similarity=0.107 Sum_probs=73.7
Q ss_pred eEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCCHHHHHHHhh
Q 017846 219 RFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 297 (365)
Q Consensus 219 g~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 297 (365)
|+||.+|.-++.+..++. +.. ..+|...--... ...........++|||+|||+.+|+++|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~gg~~~g~~~g------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~ 68 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMAS-MTGGQQMGRGSG------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 68 (139)
T ss_dssp --------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC
T ss_pred CcccccccCccccchhcccchh-ccCCCCCCCCCC------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 678888887777766664 322 122222210000 001111234568999999999999999999999
Q ss_pred hcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCCCCCCCC
Q 017846 298 SVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKTPVRPRA 359 (365)
Q Consensus 298 ~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~~~~~~r~ 359 (365)
+ || |..|.|+.++ ++++|||||+|.+.++|.+||.+|+..|.|+.|+ |.++.++.....
T Consensus 69 ~-~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~-V~~a~~~~~~~~ 128 (139)
T 2hgn_A 69 P-LN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIE-LFLNSTTGASNG 128 (139)
T ss_dssp S-CC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCC-CEECCCSCC---
T ss_pred h-cC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEE-EEECCCCCCCCC
Confidence 9 69 7799999876 6899999999999999999999999999999999 999887655443
No 297
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.9e-16 Score=123.23 Aligned_cols=81 Identities=19% Similarity=0.090 Sum_probs=74.2
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCce-EEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEV-QRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I-~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
...++|||+|||..+++++|+++|++ ||.| ..|+|+.+. +.++|||||+|.+.++|.+||.+|+..|.|++|+ |.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~-v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF-VHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEE-EEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEE-EEE
Confidence 45689999999999999999999999 5999 899999887 6789999999999999999999999999999999 999
Q ss_pred CCCCC
Q 017846 351 SKTPV 355 (365)
Q Consensus 351 a~~~~ 355 (365)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86543
No 298
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=120.69 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=68.1
Q ss_pred CCCcEEEE--cCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCcee-----CCeeE
Q 017846 176 VIRRTVYV--SDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML-----GFYPV 247 (365)
Q Consensus 176 ~~~~~lfV--~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i-----~g~~l 247 (365)
...++||| |||++++++++|+++|++||.|.+|.|+.+ ||||||+|.+.++|++|++ |||..+ .|++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 35678999 789999999999999999999999988754 6899999999999999998 999998 68999
Q ss_pred EEeeCCC
Q 017846 248 RVLPSKT 254 (365)
Q Consensus 248 ~V~~a~~ 254 (365)
.|.+++.
T Consensus 99 ~v~~a~~ 105 (114)
T 2cq2_A 99 YLNFVEK 105 (114)
T ss_dssp EEEEESC
T ss_pred EEEeccc
Confidence 9999863
No 299
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=120.90 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=72.6
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCce----EEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEV----QRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRL 347 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I----~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~ 347 (365)
.+.++|||+|||..+++++|+++|++ ||.| ..+++. .+.++|||||+|.+.++|.+|+. |||..|.|++|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~- 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV- 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE-
Confidence 45689999999999999999999999 5998 555554 46789999999999999999999 999999999999
Q ss_pred eecCCCCCCCC
Q 017846 348 VSPSKTPVRPR 358 (365)
Q Consensus 348 V~~a~~~~~~r 358 (365)
|.|+++...++
T Consensus 99 v~~a~~~~~~~ 109 (115)
T 2cpx_A 99 IEFGKNKKQRS 109 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEccCCCCCC
Confidence 99998875443
No 300
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=115.79 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=71.4
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
....++|||.|||..+++++|+++|+. |+ .|.++.+. +.++|||||+|.+.++|.+||. |||..|.|++|+ |
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-V 86 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDG-SV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT-L 86 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTT-CS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE-E
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcC-Ce---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE-E
Confidence 445689999999999999999999998 44 56666654 6789999999999999999999 999999999999 9
Q ss_pred ecCCCCCCCC
Q 017846 349 SPSKTPVRPR 358 (365)
Q Consensus 349 ~~a~~~~~~r 358 (365)
.++++.....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2fc8_A 87 DWAKPKGEGG 96 (102)
T ss_dssp EECCCCCSSS
T ss_pred EEecCCCCCC
Confidence 9998875543
No 301
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.3e-15 Score=112.40 Aligned_cols=74 Identities=19% Similarity=0.371 Sum_probs=68.9
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-h-CCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-C-SGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-l-ng~~l~g~~l~~V~~ 350 (365)
...++|||+|||..+++++|+++|++ ||.|..|.++++ +|||||+|.+.++|.+|+. | +|..+.|++|+ |.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~-v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN-VKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC-EEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE-EEe
Confidence 34689999999999999999999999 699999999874 5799999999999999999 8 99999999999 999
Q ss_pred CC
Q 017846 351 SK 352 (365)
Q Consensus 351 a~ 352 (365)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 302
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.3e-16 Score=114.39 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=68.6
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
++|||+|||..+++++|+++|++ ||.|..|.+++++ +.++|||||+|.+.++|.+|+. ++ ..++|++|+ |.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~-v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTID-PKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCE-EEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEE-EEec
Confidence 47999999999999999999999 6999999999886 6789999999999999999999 88 999999999 9886
No 303
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=1.7e-15 Score=122.40 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=72.0
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLV 348 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~---I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V 348 (365)
...++|||+|||+.+|+++|+++|++ ||. |..|+|+.+. ++++|||||+|.+.++|.+||.+|+..|+|+.|+ |
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~-V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIE-V 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEE-E
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE-E
Confidence 34689999999999999999999999 698 8999998876 7899999999999999999999999999999999 8
Q ss_pred ecCC
Q 017846 349 SPSK 352 (365)
Q Consensus 349 ~~a~ 352 (365)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 304
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.3e-15 Score=117.85 Aligned_cols=82 Identities=24% Similarity=0.220 Sum_probs=73.4
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEE-EEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~-v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
....+|||+|||+.+++++|+++|++ ||.|.. |.|+.+. ++++|||||+|.+.++|.+||..|+..|+|+.|+ |.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~-v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE-IFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCE-EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEE-EEE
Confidence 34589999999999999999999999 699987 8888775 6899999999999999999999899999999999 988
Q ss_pred CCCCCC
Q 017846 351 SKTPVR 356 (365)
Q Consensus 351 a~~~~~ 356 (365)
+.+...
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 765543
No 305
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=117.04 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=69.7
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...++|||+|||..+++++|+++|++ ||.|. +.++.+ .++|||||+|.+.++|.+|+. |||..|.|++|+ |.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~-V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRE-LGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR-VALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE-EEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE-EEEc
Confidence 34689999999999999999999999 69997 666654 578899999999999999999 999999999999 9998
Q ss_pred CCC
Q 017846 352 KTP 354 (365)
Q Consensus 352 ~~~ 354 (365)
++.
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 306
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.3e-15 Score=115.95 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=72.3
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...++|||+|||..+++++|+++|++ ||.|..|.+.++ +|||||+|.+.++|.+|++ |||..|.|++|+ |.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~-v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR-VRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE-EEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE-EEEc
Confidence 45689999999999999999999999 699999999875 5799999999999999999 999999999999 9999
Q ss_pred CCCCCC
Q 017846 352 KTPVRP 357 (365)
Q Consensus 352 ~~~~~~ 357 (365)
++....
T Consensus 87 ~~~~~~ 92 (99)
T 2cpj_A 87 CHSASL 92 (99)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 876443
No 307
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.4e-15 Score=118.22 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=70.1
Q ss_pred cccccEEEeeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 017846 272 EMCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVS 349 (365)
Q Consensus 272 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~ 349 (365)
..+.++|||+|||. .+++++|+++|++ ||.|..|.+. +|||||+|.+.++|.+|+. |||..+.|++|+ |.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI-LE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC-EE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE-EE
Confidence 34568999999998 9999999999999 6999999995 5799999999999999999 999999999999 99
Q ss_pred cCCCCCCCCC
Q 017846 350 PSKTPVRPRA 359 (365)
Q Consensus 350 ~a~~~~~~r~ 359 (365)
++++...++.
T Consensus 79 ~a~~~~~~~~ 88 (96)
T 2kvi_A 79 VSSSNARPQF 88 (96)
T ss_dssp EEECCCC---
T ss_pred EcCcCCCCCC
Confidence 9987765544
No 308
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=1.6e-15 Score=117.85 Aligned_cols=80 Identities=26% Similarity=0.369 Sum_probs=72.6
Q ss_pred ccccEEEeeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 017846 273 MCSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRL 347 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~----~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~ 347 (365)
.+.++|||+|||..+++++|+ ++|++ ||.|..|.+.+ .+.++|||||+|.+.++|.+|+. |||..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~- 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR- 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE-
Confidence 356899999999999999999 99999 59999999874 24577899999999999999999 999999999999
Q ss_pred eecCCCCC
Q 017846 348 VSPSKTPV 355 (365)
Q Consensus 348 V~~a~~~~ 355 (365)
|.|+++..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998764
No 309
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=2.8e-15 Score=120.30 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=72.3
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
+.++|||+|||..+++++|+++|++ ||.|..|.++.+. .++|||||+|.+.++|.+|+. |||..+.|+.|+ |.+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~-v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLV-VLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCE-EEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE-EEEec
Confidence 4589999999999999999999999 6999999998764 468999999999999999999 999999999999 99987
Q ss_pred CC
Q 017846 353 TP 354 (365)
Q Consensus 353 ~~ 354 (365)
+.
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 310
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=4.3e-15 Score=125.97 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCC--eeEEEeeCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSK 253 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g--~~l~V~~a~ 253 (365)
.-.+|||+||++.+|+++|+++|++||.|.+|+|..+. ++|||||+|.+.++|++|++ |||..|.| ++|+|.|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 44569999999999999999999999999999997543 57999999999999999998 99999965 999999997
Q ss_pred CC
Q 017846 254 TA 255 (365)
Q Consensus 254 ~~ 255 (365)
..
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 311
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.3e-15 Score=119.39 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=71.8
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
..++|||+|||..+++++|+++|++ ||.|..|.|++ ++|||||+|.+.++|.+|+. |||..|.|++|+ |.|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~-V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY-LEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE-EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE-EEECC
Confidence 4589999999999999999999999 69999999875 45799999999999999999 999999999999 99987
Q ss_pred CCCCCC
Q 017846 353 TPVRPR 358 (365)
Q Consensus 353 ~~~~~r 358 (365)
.....+
T Consensus 83 ~~~~~~ 88 (111)
T 1whx_A 83 IGVFGA 88 (111)
T ss_dssp TTTTCC
T ss_pred CCccCC
Confidence 765543
No 312
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=112.28 Aligned_cols=80 Identities=21% Similarity=0.318 Sum_probs=68.9
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKT 353 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~~ 353 (365)
..++|||+|||..+++++|+++|++ ||.|..| +.+....+ ||||+|.+.++|.+|+.|||..|.|+.|+ |.++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~-V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLR-VRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECC-CBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEE-EEECCc
Confidence 3579999999999999999999999 6999988 34433233 99999999999999999999999999999 999876
Q ss_pred CCCCC
Q 017846 354 PVRPR 358 (365)
Q Consensus 354 ~~~~r 358 (365)
...++
T Consensus 82 ~~~~~ 86 (94)
T 2e5g_A 82 KEFQS 86 (94)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 54443
No 313
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=125.93 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEE--------EEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCe
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC--------RICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY 245 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v--------~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~ 245 (365)
....++|||+|||+++++++|+++|++||.|..+ ++.. .+.++|||||+|.+.++|.+|+. |||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3456899999999999999999999999998764 3332 35679999999999999999999 999999999
Q ss_pred eEEEeeCCCC
Q 017846 246 PVRVLPSKTA 255 (365)
Q Consensus 246 ~l~V~~a~~~ 255 (365)
+|.|.+++..
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999643
No 314
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=3.5e-15 Score=113.38 Aligned_cols=71 Identities=27% Similarity=0.461 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhC----C-------CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCe
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY 245 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~ 245 (365)
..++|||+|||+++++++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+.+||..+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 56899999999999999999999999 8 9999999876 5899999999999999999999999999
Q ss_pred eEEEee
Q 017846 246 PVRVLP 251 (365)
Q Consensus 246 ~l~V~~ 251 (365)
+|+|.+
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999975
No 315
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=7.8e-15 Score=119.86 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceE-EEEEeCCHHHHHHHHH-hCCceeCC--eeEEEeeC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF-AFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPS 252 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~-aFV~F~~~~~A~~Al~-l~g~~i~g--~~l~V~~a 252 (365)
.--.|||+||++.+|+++|+++|++||.|.+|++..+. +|| |||+|.+.++|.+|++ |||..|.| ++|+|.++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 33468999999999999999999999999999988643 588 9999999999999998 99999988 89999999
Q ss_pred CCC
Q 017846 253 KTA 255 (365)
Q Consensus 253 ~~~ 255 (365)
+..
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 316
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=7.6e-16 Score=113.76 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=68.1
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a 351 (365)
+|||+|||..+++++|+++|++ ||.|..|.+++++ +.++|||||+|.+.++|.+|+.+++..+.|++|+ |.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~-v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCE-IKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCC-EEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEE-EEEC
Confidence 5899999999999999999999 5999999998876 6789999999999999999999889999999999 8875
No 317
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=3.3e-15 Score=129.43 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
....++|||+|||+.+++++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|.+|++ |++..+.|++|.|.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3456799999999999999999999999999999999987 3469999999999999999999 9999999999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 318
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=1.8e-15 Score=125.29 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=72.3
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVS 349 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~---I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~ 349 (365)
..++|||+|||+.+|+++|+++|++ ||. |..|+|++++ ++++|||||+|.+.++|.+||.+|+..|+|+.|+ |.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~-V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIE-VF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEE-EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEE-EE
Confidence 4589999999999999999999999 699 8999999876 7899999999999999999999999999999999 98
Q ss_pred cCCC
Q 017846 350 PSKT 353 (365)
Q Consensus 350 ~a~~ 353 (365)
++.+
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8754
No 319
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.8e-15 Score=114.39 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=65.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCCC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~~ 255 (365)
..++|||+|||+++++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++|+.. ...+.|++|+|.++.+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 5689999999999999999999999999999999876 679999999999999865432 34568999999998643
No 320
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.6e-16 Score=127.88 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeE--------EEEecCCC--CCceEEEEEeCCHHHHHHHHH-hCCceeC
Q 017846 175 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--------CRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLG 243 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~d~~--~~kg~aFV~F~~~~~A~~Al~-l~g~~i~ 243 (365)
....++|||+|||.++++++|+++|++||.|.. |+|+.++. .++|||||+|.+.++|.+|++ |++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345678999999999999999999999999999 89998864 469999999999999999998 9999999
Q ss_pred CeeEEEeeCCC
Q 017846 244 FYPVRVLPSKT 254 (365)
Q Consensus 244 g~~l~V~~a~~ 254 (365)
|++|+|.+++.
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999999864
No 321
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-15 Score=119.17 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=71.6
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
...++|||+|||..+++++|+++|++ ||.|.. .++.+. +.++|||||+|.+.++|.+|++|||..|.|++|+ |.+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~-V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIK-LEK 91 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCE-EEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEE-EEE
Confidence 34689999999999999999999999 598887 555543 6789999999999999999999999999999999 999
Q ss_pred CCCCCC
Q 017846 351 SKTPVR 356 (365)
Q Consensus 351 a~~~~~ 356 (365)
+++...
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 986543
No 322
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=2.8e-15 Score=117.60 Aligned_cols=81 Identities=19% Similarity=0.359 Sum_probs=73.2
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a 351 (365)
...++|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|+. ++..++|++|. |.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~-v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLK-LGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECE-EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEE-EEEC
Confidence 34589999999999999999999999 5999999999886 6789999999999999999999 99999999999 9988
Q ss_pred CCCCC
Q 017846 352 KTPVR 356 (365)
Q Consensus 352 ~~~~~ 356 (365)
.+...
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 65433
No 323
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=6.3e-15 Score=112.52 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=69.4
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
..++|||+|||..+++++|+++|++ | .|.+|++. .++|||||+|.+.++|.+|+. |||..+.|++|+ |.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~-V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI-VQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE-EEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE-EEEcC
Confidence 4578999999999999999999999 6 89999985 578899999999999999999 999999999999 99987
Q ss_pred CCCC
Q 017846 353 TPVR 356 (365)
Q Consensus 353 ~~~~ 356 (365)
....
T Consensus 77 ~~~~ 80 (88)
T 1wg1_A 77 TDAL 80 (88)
T ss_dssp CCCC
T ss_pred CCce
Confidence 6543
No 324
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=5.3e-15 Score=118.91 Aligned_cols=73 Identities=22% Similarity=0.211 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCee-----EEEe
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYP-----VRVL 250 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~-----l~V~ 250 (365)
...+|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+ ||+..|.|++ |+|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4578999999999999999999999999999999887 899999999999999999 9999999988 7777
Q ss_pred eCCC
Q 017846 251 PSKT 254 (365)
Q Consensus 251 ~a~~ 254 (365)
.+.+
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 7654
No 325
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=3.9e-15 Score=124.26 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=70.9
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEE--------EEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCe
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL--------RLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL 343 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v--------~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~ 343 (365)
.+.++|||+|||+.+++++|+++|++ ||.|..| .+. ..+.++|||||+|.+.++|.+|+. |||..|.|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 35689999999999999999999999 5998764 222 236789999999999999999999 999999999
Q ss_pred eeEEeecCCCCCC
Q 017846 344 PIRLVSPSKTPVR 356 (365)
Q Consensus 344 ~l~~V~~a~~~~~ 356 (365)
+|+ |.++++...
T Consensus 121 ~l~-V~~a~~~~~ 132 (143)
T 3egn_A 121 PMV-VQFARSARP 132 (143)
T ss_dssp ECE-EEECCCSCC
T ss_pred EEE-EEECCCCCC
Confidence 999 999987543
No 326
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=3.4e-15 Score=119.09 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=71.0
Q ss_pred cccccEEEeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC--CceeCCeeeEE
Q 017846 272 EMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRL 347 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-ln--g~~l~g~~l~~ 347 (365)
..+.++|||+|||.. +++++|+++|++ ||.|.+|.|++. +|||||+|.+.++|.+|++ || +..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~- 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK- 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE-
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE-
Confidence 446789999999998 999999999999 699999999864 5799999999999999999 86 4569999999
Q ss_pred eecCCCCCCCC
Q 017846 348 VSPSKTPVRPR 358 (365)
Q Consensus 348 V~~a~~~~~~r 358 (365)
|.+++......
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998654443
No 327
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.8e-14 Score=110.11 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=68.7
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...++|||+|| .+++++|+++|++ ||.|..|.|. .++|||||+|.+.++|.+|+. |||..|.|++|+ |.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~-v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK-VNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE-EECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE-EEEC
Confidence 35689999996 8999999999999 6999999995 356799999999999999999 999999999999 9999
Q ss_pred CCCCC
Q 017846 352 KTPVR 356 (365)
Q Consensus 352 ~~~~~ 356 (365)
++...
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87644
No 328
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=1.9e-15 Score=119.93 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=73.3
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLV 348 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~---I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V 348 (365)
....+|||+|||..+++++|+++|++ ||. |..|.|+.+. ++++|||||+|.+.++|.+||.+|+..++|+.|+ |
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~-V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE-V 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC-C
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE-E
Confidence 34689999999999999999999999 588 8999999876 6899999999999999999999999999999999 9
Q ss_pred ecCCCC
Q 017846 349 SPSKTP 354 (365)
Q Consensus 349 ~~a~~~ 354 (365)
.++.+.
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 988653
No 329
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=116.03 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 249 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-----~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V 249 (365)
...++|||+|||+++++++|+++|++||.|. +.++.++. .++|||||+|.++++|.+|++ ++ .+.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568899999999999999999999999999 88888763 569999999999999999998 73 366766666
Q ss_pred eeC
Q 017846 250 LPS 252 (365)
Q Consensus 250 ~~a 252 (365)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 554
No 330
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=5.5e-15 Score=133.25 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=72.1
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G--~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
..++|||+|||..+|+++|+++|++ || .|.+|+|++++ ++++|||||+|.+.++|.+||+ |||..|.|++|+ |
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~-V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV-V 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE-E
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE-E
Confidence 4578999999999999999999999 69 99999999985 6899999999999999999999 999999999999 9
Q ss_pred ecCCC
Q 017846 349 SPSKT 353 (365)
Q Consensus 349 ~~a~~ 353 (365)
.++++
T Consensus 145 ~~a~~ 149 (229)
T 3q2s_C 145 TPVNK 149 (229)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 98764
No 331
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=2e-14 Score=117.43 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=69.6
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceE-EEEEeCCHHHHHHHHH-hCCceeCC--eeeEEee
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI-AFVEFAMAESAIAALN-CSGAVLGS--LPIRLVS 349 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~-afV~F~~~~~A~~Al~-lng~~l~g--~~l~~V~ 349 (365)
....|||.||++.+|+++|+++|++ ||.|.+|.+..+ .+|| |||+|.+.++|.+|++ |||..|.| ++|+ |.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr-I~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR-ID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE-EE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE-EE
Confidence 3467889999999999999999999 699999998764 3577 9999999999999999 99999988 9999 99
Q ss_pred cCCCCC
Q 017846 350 PSKTPV 355 (365)
Q Consensus 350 ~a~~~~ 355 (365)
|+++..
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998763
No 332
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=1.7e-14 Score=126.67 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=70.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 017846 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 254 (365)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~~a~~ 254 (365)
.++|||+|||+++++++|+++|++||.|.+|+|+++.. .++|||||+|.++++|.+|++..+..+.|++|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 47899999999999999999999999999999999874 469999999999999999999555699999999999754
No 333
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=2.1e-14 Score=116.67 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=65.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceE-EEEEeCCHHHHHHHHH-hCCceeCC--eeEEEeeCCCC
Q 017846 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF-AFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSKTA 255 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~-aFV~F~~~~~A~~Al~-l~g~~i~g--~~l~V~~a~~~ 255 (365)
.|||+||++.+++++|+++|++||.|.+|+|... .|| |||+|.+.++|.+|++ |||..|.| ++|+|.+++..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 4789999999999999999999999999999753 286 9999999999999998 99999987 69999999754
No 334
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=1.6e-14 Score=122.48 Aligned_cols=78 Identities=21% Similarity=0.151 Sum_probs=70.1
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCC--eeeEEeec
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS--LPIRLVSP 350 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g--~~l~~V~~ 350 (365)
...+|||+||++.+++++|+++|++ ||.|.+|.|..+. ++|||||+|.+.++|.+|++ |||..|.| ++|+ |.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~-V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR-IDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE-EEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE-EEE
Confidence 3467999999999999999999999 5999999997543 57899999999999999999 99999965 9999 999
Q ss_pred CCCCC
Q 017846 351 SKTPV 355 (365)
Q Consensus 351 a~~~~ 355 (365)
+++..
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98763
No 335
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.3e-15 Score=119.98 Aligned_cols=79 Identities=20% Similarity=0.195 Sum_probs=70.2
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
....+|||+|||+.+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+||.|||..|+|+.|. |.+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~-V~~ 100 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQ-VHP 100 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBE-EEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEE-EEE
Confidence 35689999999999999999999999 6999885544433 6889999999999999999999999999999999 998
Q ss_pred CCC
Q 017846 351 SKT 353 (365)
Q Consensus 351 a~~ 353 (365)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 764
No 336
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.5e-14 Score=116.62 Aligned_cols=75 Identities=17% Similarity=0.305 Sum_probs=66.7
Q ss_pred cEEEEcCC----CCCCcHHHHHHHhhhCCCeeEEEEecCCCC--CceEEEEEeCC----HHH----HHHHHH---hCCce
Q 017846 179 RTVYVSDI----DQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTD----EEG----ARAALS---LAGTM 241 (365)
Q Consensus 179 ~~lfV~nL----p~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~kg~aFV~F~~----~~~----A~~Al~---l~g~~ 241 (365)
..|||+|| |+.+++++|+++|+.||+|.++.++.|+.+ ++|||||+|.+ +++ |.+|+. ++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999965 69999999996 333 778875 69999
Q ss_pred eCCeeEEEeeCC
Q 017846 242 LGFYPVRVLPSK 253 (365)
Q Consensus 242 i~g~~l~V~~a~ 253 (365)
|.|++|+|...+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 337
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=9.9e-15 Score=126.40 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=77.5
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~ 350 (365)
...++|||.|||..+++++|+++|++ ||.|..|.|..+. +.++|||||+|.+.++|.+|+. |||..|.|++|+ |.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~-V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD-IQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE-EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE-EEE
Confidence 45689999999999999999999999 6999999999887 6789999999999999999999 999999999999 999
Q ss_pred CCCCCCCCC
Q 017846 351 SKTPVRPRA 359 (365)
Q Consensus 351 a~~~~~~r~ 359 (365)
+.+......
T Consensus 164 a~~~~~~~~ 172 (177)
T 2f3j_A 164 VASQIDLEH 172 (177)
T ss_dssp ESSGGGGCC
T ss_pred ecCCCCCCC
Confidence 887654443
No 338
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=6.7e-15 Score=120.08 Aligned_cols=76 Identities=28% Similarity=0.224 Sum_probs=68.8
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceE--EEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ--RLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSP 350 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~--~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~ 350 (365)
..++|||+|||+.+|+++|+++|++ | .|. .|+|+.++ ++++|||||+|.+.++|.+||.+++..|+|+.|. |.+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~-~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~-V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSG-L-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE-VFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTT-S-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC-CEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-C-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE-EEE
Confidence 4578999999999999999999999 5 466 89998876 7899999999999999999999777999999999 887
Q ss_pred CC
Q 017846 351 SK 352 (365)
Q Consensus 351 a~ 352 (365)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 339
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=111.43 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=69.6
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEE-EeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLR-LLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~-i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
..++|||+|||..+++++|+++|++ ||.|..|+ ++.+... |.|||+|.+.++|.+|+. |||..|.|++|+ |.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~-V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLK-VAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCE-EEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEE-EEEc
Confidence 4589999999999999999999999 59999994 7777543 349999999999999999 999999999999 9999
Q ss_pred CCC
Q 017846 352 KTP 354 (365)
Q Consensus 352 ~~~ 354 (365)
++.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 876
No 340
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=2.1e-14 Score=116.49 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeC
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 252 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a 252 (365)
.....++|||+|| ++++++|+++|++||.|.+|++. .++|||||+|.+.++|.+|++ |+|..+.|++|+|.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 3456789999996 69999999999999999999996 456899999999999999998 9999999999999998
Q ss_pred CC
Q 017846 253 KT 254 (365)
Q Consensus 253 ~~ 254 (365)
+.
T Consensus 109 ~~ 110 (121)
T 2bz2_A 109 RK 110 (121)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 341
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=7e-14 Score=122.72 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=91.1
Q ss_pred CHHHHHHHHH-h--CCceeCCeeEEEeeCCCCCCCCCCCCCCCCc--hhhcccccEEEeeCCCCCCCHHHHHHHhhhcCC
Q 017846 227 DEEGARAALS-L--AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE--DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG 301 (365)
Q Consensus 227 ~~~~A~~Al~-l--~g~~i~g~~l~V~~a~~~~~~~~~~~~~~~~--~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~~G 301 (365)
+.+.+..|+. . ....+.+....|....... .|... .......++|||+|||..+++++|+++|++ ||
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p-------~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKP-------LPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLED-KG 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSC-------CCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTT-SC
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCC-------CcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhc-CC
Confidence 5677888887 5 4555666555555542110 11110 112345689999999999999999999999 69
Q ss_pred ceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCCCC
Q 017846 302 EVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKTPV 355 (365)
Q Consensus 302 ~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~~~~ 355 (365)
.|..|+|+++. +.++|||||+|.+.++|.+|+.+.+..++|++|. |.+++.-.
T Consensus 135 ~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~-V~~~~~y~ 188 (193)
T 2voo_A 135 QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLL-ILFKDDYF 188 (193)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECE-EEETTTC-
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEE-EEEhHHHH
Confidence 99999999876 6789999999999999999999434599999999 99987643
No 342
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=1.6e-14 Score=116.15 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=66.2
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCee-----eEE
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP-----IRL 347 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~-----l~~ 347 (365)
...+|||.|||..+++++|+++|++ ||.|..|.|+.+ |||||+|.+.++|.+||+ |||..|.|++ |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~- 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR- 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE-
Confidence 3589999999999999999999999 599999999887 799999999999999999 9999999998 77
Q ss_pred eecCCCCCCC
Q 017846 348 VSPSKTPVRP 357 (365)
Q Consensus 348 V~~a~~~~~~ 357 (365)
|..+.+....
T Consensus 88 v~~~~~~~~~ 97 (115)
T 3beg_B 88 VKVDGPRSPS 97 (115)
T ss_dssp EEECC----C
T ss_pred eccCCCCCCC
Confidence 7776655443
No 343
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.2e-16 Score=124.41 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=75.4
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLG 341 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~--------v~i~~d~--~~~kg~afV~F~~~~~A~~Al~-lng~~l~ 341 (365)
.+.++|||+|||..+++++|+++|++ ||.|.. |.|+.++ +.++|||||+|.+.++|.+|+. |||..|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 35689999999999999999999999 699998 8888875 6789999999999999999999 9999999
Q ss_pred CeeeEEeecCCCCCCC
Q 017846 342 SLPIRLVSPSKTPVRP 357 (365)
Q Consensus 342 g~~l~~V~~a~~~~~~ 357 (365)
|++|+ |.++++....
T Consensus 84 g~~l~-V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIK-VSFATRRADF 98 (116)
Confidence 99999 9998876443
No 344
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=109.58 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=62.5
Q ss_pred CcE-EEEcCCCCCCcHHH----HHHHhhhC-CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 178 RRT-VYVSDIDQQVTEEQ----LATLFLTC-GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 178 ~~~-lfV~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
..+ |||+|||..+++++ |+++|++| |+|.+|. .|+|||.|.+.++|.+|++ |+|..+.||+|+|.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 445 99999999999987 55899999 5999881 2899999999999999998 99999999999999
Q ss_pred eCCCC
Q 017846 251 PSKTA 255 (365)
Q Consensus 251 ~a~~~ 255 (365)
+++..
T Consensus 80 ~A~~~ 84 (96)
T 2diu_A 80 FTPKN 84 (96)
T ss_dssp SSCCS
T ss_pred ecCCC
Confidence 99753
No 345
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=6.4e-15 Score=119.81 Aligned_cols=78 Identities=22% Similarity=0.177 Sum_probs=70.3
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCce----EEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEE
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEV----QRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRL 347 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I----~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~ 347 (365)
....+|||+|||+.+|+++|+++|++ ||.| ..|.|+.+. ++++|||||+|.+.++|.+||..|+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~- 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQ-HCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE- 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-hCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE-
Confidence 45689999999999999999999999 5875 689988875 6899999999999999999999999999999999
Q ss_pred eecCC
Q 017846 348 VSPSK 352 (365)
Q Consensus 348 V~~a~ 352 (365)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 87764
No 346
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=114.79 Aligned_cols=80 Identities=13% Similarity=0.245 Sum_probs=70.3
Q ss_pred ccccEEEe--eCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCcee-----CCee
Q 017846 273 MCSRTIYC--TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL-----GSLP 344 (365)
Q Consensus 273 ~~~~~l~V--~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l-----~g~~ 344 (365)
.+.++||| +||+..+++++|+++|++ ||.|..|.++.+ +|||||+|.+.++|.+|++ |||..+ .|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~-fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHH-HSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 35688999 669999999999999999 599999988754 6799999999999999999 999998 7899
Q ss_pred eEEeecCCCCCCCC
Q 017846 345 IRLVSPSKTPVRPR 358 (365)
Q Consensus 345 l~~V~~a~~~~~~r 358 (365)
|. |.+++..+-..
T Consensus 98 l~-v~~a~~~p~~~ 110 (114)
T 2cq2_A 98 LY-LNFVEKVQWSG 110 (114)
T ss_dssp CE-EEEESCCCCSS
T ss_pred EE-EEecccCcccC
Confidence 99 99987654443
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.53 E-value=5.6e-14 Score=111.02 Aligned_cols=78 Identities=22% Similarity=0.205 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCC-----CCcHHHHHHHhhhCCCeeEEEEecCCC---CCceEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 017846 176 VIRRTVYVSDIDQ-----QVTEEQLATLFLTCGQVVDCRICGDPN---SVLRFAFVEFTDEEGARAALS-LAGTMLGFYP 246 (365)
Q Consensus 176 ~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~d~~---~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~ 246 (365)
..+++|+|.||.. +-++++|+++|++||.|.+|+|+.++. .++|||||+|.++++|.+|++ |||..+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999962 236899999999999999999999863 469999999999999999998 9999999999
Q ss_pred EEEeeCC
Q 017846 247 VRVLPSK 253 (365)
Q Consensus 247 l~V~~a~ 253 (365)
|.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999974
No 348
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=109.86 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=67.3
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVSPSKT 353 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~~a~~ 353 (365)
..++|||+|||..+++++|+++|++ ||.|..|.|+++ ++|||||+|.+.++|.+|+.. ...+.|++|+ |.++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~-v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVH-ISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEE-EECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEE-EEecCC
Confidence 4589999999999999999999999 699999999875 678999999999999764332 3456999999 999987
Q ss_pred CCCCC
Q 017846 354 PVRPR 358 (365)
Q Consensus 354 ~~~~r 358 (365)
.....
T Consensus 78 ~~~~~ 82 (88)
T 1wf0_A 78 KHNSN 82 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75543
No 349
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.8e-14 Score=107.56 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=64.6
Q ss_pred ccE-EEeeCCCCCCCHHH----HHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 017846 275 SRT-IYCTNIDKKVTQGD----IKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRL 347 (365)
Q Consensus 275 ~~~-l~V~nLp~~~te~~----L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~ 347 (365)
..| |||.|||..+++++ |+++|++ || .|.+|. .|+|||.|.+.++|.+|++ |||..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~- 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRII- 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE-
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEE-
Confidence 455 99999999999988 5589999 75 999881 1899999999999999999 999999999999
Q ss_pred eecCCCCCCC
Q 017846 348 VSPSKTPVRP 357 (365)
Q Consensus 348 V~~a~~~~~~ 357 (365)
|++++....-
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999887544
No 350
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=6.7e-14 Score=110.57 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=70.4
Q ss_pred cccccEEEeeCCCC-----CCCHHHHHHHhhhcCCceEEEEEeccC---CCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 272 EMCSRTIYCTNIDK-----KVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (365)
Q Consensus 272 ~~~~~~l~V~nLp~-----~~te~~L~~~F~~~~G~I~~v~i~~d~---~~~kg~afV~F~~~~~A~~Al~-lng~~l~g 342 (365)
..++++|+|.||.. .-++++|++.|++ ||.|.+|.|++++ +.++|||||+|.+.++|.+|+. |||+.|.|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 34678999999963 2378999999999 5999999999875 4689999999999999999999 99999999
Q ss_pred eeeEEeecCCC
Q 017846 343 LPIRLVSPSKT 353 (365)
Q Consensus 343 ~~l~~V~~a~~ 353 (365)
++|+ |.++.+
T Consensus 84 r~i~-v~~a~~ 93 (105)
T 2pe8_A 84 RVVK-ACFYNL 93 (105)
T ss_dssp EECE-EEECCH
T ss_pred cEEE-EEEcCH
Confidence 9999 999864
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=4.4e-14 Score=108.19 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=62.5
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCc--eeCCeeeEEeec
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGA--VLGSLPIRLVSP 350 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~--~l~g~~l~~V~~ 350 (365)
.+..+|||+|||..+|+++|+++|++ ||.|.+|+|+++ ++|||||+|.+.++|.+ +++. .+.|++|. |.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~-v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVH-ISN 80 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEE-EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEE-EEE
Confidence 45689999999999999999999999 699999999885 78999999999999984 3444 45799999 999
Q ss_pred CCCCC
Q 017846 351 SKTPV 355 (365)
Q Consensus 351 a~~~~ 355 (365)
+++..
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 88653
No 352
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=6e-14 Score=113.99 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=66.7
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceE-EEEEeCCHHHHHHHHH-hCCceeCC--eeeEEeecC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI-AFVEFAMAESAIAALN-CSGAVLGS--LPIRLVSPS 351 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~-afV~F~~~~~A~~Al~-lng~~l~g--~~l~~V~~a 351 (365)
..|||.||+..+++++|+++|++ ||.|.+|.|... .|| |||+|.+.++|..|++ |||..|.| ++|+ |.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~-V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNP-VGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK-IEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTT-TSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE-EECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE-EEEe
Confidence 45789999999999999999999 699999999763 286 9999999999999999 99999987 6999 9999
Q ss_pred CCCC
Q 017846 352 KTPV 355 (365)
Q Consensus 352 ~~~~ 355 (365)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8774
No 353
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.51 E-value=6.2e-14 Score=106.37 Aligned_cols=71 Identities=23% Similarity=0.443 Sum_probs=65.9
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcC----C-------ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVC----G-------EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGS 342 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~----G-------~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g 342 (365)
..++|||+|||..+++++|+++|++ | | .|.++.+.++ +|||||+|.+.++|.+|+.|||..|.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECC
Confidence 4589999999999999999999999 7 7 8999999875 579999999999999999999999999
Q ss_pred eeeEEeec
Q 017846 343 LPIRLVSP 350 (365)
Q Consensus 343 ~~l~~V~~ 350 (365)
++|+ |+.
T Consensus 80 ~~l~-V~r 86 (87)
T 2hzc_A 80 QSLK-IRR 86 (87)
T ss_dssp EECE-EEC
T ss_pred eEEE-EeC
Confidence 9999 864
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=4.3e-14 Score=127.45 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCcee--
Q 017846 175 EVIRRTVYVSDIDQQV---------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML-- 242 (365)
Q Consensus 175 ~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i-- 242 (365)
....++|||+||+..+ ++++|+++|++||.|++|+|+.+ ||||||+|.+.++|+.|++ |+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 3457899999999998 79999999999999999999964 5899999999999999998 999999
Q ss_pred ----------CCeeEEEeeCCCC
Q 017846 243 ----------GFYPVRVLPSKTA 255 (365)
Q Consensus 243 ----------~g~~l~V~~a~~~ 255 (365)
.|+.|.|.||+..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC--
T ss_pred cccccccccCCCCEEEEEEccCC
Confidence 8999999999743
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=8e-14 Score=113.04 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=69.0
Q ss_pred ccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 017846 273 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPS 351 (365)
Q Consensus 273 ~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a 351 (365)
...++|||+|| .+++++|+++|++ ||.|.+|.+. .++|||||+|.+.++|.+|+. |||..|.|++|+ |.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~-V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK-VNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE-EEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE-EEEe
Confidence 45689999996 6999999999999 6999999996 366899999999999999999 999999999999 9999
Q ss_pred CCCCCC
Q 017846 352 KTPVRP 357 (365)
Q Consensus 352 ~~~~~~ 357 (365)
++....
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 876443
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.4e-13 Score=107.07 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=67.9
Q ss_pred CCCCCcEEEEcCCCCCCc-----------HHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCce
Q 017846 174 DEVIRRTVYVSDIDQQVT-----------EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTM 241 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~ 241 (365)
.+...++|+|.||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+. |||..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 345678999999944332 6899999999999999966 554 378999999999999999998 99999
Q ss_pred eCCeeEEEeeCCC
Q 017846 242 LGFYPVRVLPSKT 254 (365)
Q Consensus 242 i~g~~l~V~~a~~ 254 (365)
+.|++|+|.++.+
T Consensus 89 ~~gr~l~v~~a~~ 101 (112)
T 2dit_A 89 FGGRQITAQAWDG 101 (112)
T ss_dssp ETTEECEEEECCS
T ss_pred ECCcEEEEEEeCC
Confidence 9999999999854
No 357
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.7e-13 Score=108.62 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=58.2
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-----CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-----QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 346 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~-----~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~ 346 (365)
..++|||+|||..+++++|+++|++ ||.|. +.++.+. +.++|||||+|.+.++|.+||+ |+ .++|+.|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 4589999999999999999999999 69999 8877765 4789999999999999999998 82 24444444
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.4e-13 Score=105.73 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=69.0
Q ss_pred cccccEEEeeCCCCCCC-----------HHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCce
Q 017846 272 EMCSRTIYCTNIDKKVT-----------QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAV 339 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~ 339 (365)
..+.++|+|+||..... +++|+++|++ ||.|..|.| .+. .++|||||+|.+.++|.+|+. |||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 45679999999954332 6899999999 699999966 444 389999999999999999999 99999
Q ss_pred eCCeeeEEeecCCCCCC
Q 017846 340 LGSLPIRLVSPSKTPVR 356 (365)
Q Consensus 340 l~g~~l~~V~~a~~~~~ 356 (365)
|.|++|+ |.++.+...
T Consensus 89 ~~gr~l~-v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQIT-AQAWDGTTD 104 (112)
T ss_dssp ETTEECE-EEECCSCCC
T ss_pred ECCcEEE-EEEeCCCCC
Confidence 9999999 999877543
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.41 E-value=4.8e-13 Score=107.85 Aligned_cols=77 Identities=18% Similarity=0.306 Sum_probs=67.2
Q ss_pred cEEEeeCC----CCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCC----HHH----HHHHHH---hCCc
Q 017846 276 RTIYCTNI----DKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM----AES----AIAALN---CSGA 338 (365)
Q Consensus 276 ~~l~V~nL----p~~~te~~L~~~F~~~~G~I~~v~i~~d~--~~~kg~afV~F~~----~~~----A~~Al~---lng~ 338 (365)
..|||+|| |+.+++++|+++|++ ||.|.+|.++.|+ +.++|||||+|.+ +++ |.+|+. +||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 999999999999999 6999999999998 6899999999995 323 788876 6999
Q ss_pred eeCCeeeEEeecCCCC
Q 017846 339 VLGSLPIRLVSPSKTP 354 (365)
Q Consensus 339 ~l~g~~l~~V~~a~~~ 354 (365)
.|+|++|+ |.+-+..
T Consensus 82 ~I~Gr~ir-V~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFE-VILNKHS 96 (136)
T ss_dssp EETTEEEE-EEECCTT
T ss_pred eecCcEEE-EEECccc
Confidence 99999999 9886543
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.8e-13 Score=107.90 Aligned_cols=70 Identities=19% Similarity=0.357 Sum_probs=62.3
Q ss_pred EcCCCCCCcHHHHHHHh------------hhCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEE
Q 017846 183 VSDIDQQVTEEQLATLF------------LTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 248 (365)
Q Consensus 183 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~d~~-~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~ 248 (365)
+.|||..+++++|++.| ++||.|.+|+|+++.. .++|||||+|.++++|.+|+. |||..+.|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888777666 9999999999998874 479999999999999999998 999999999999
Q ss_pred EeeC
Q 017846 249 VLPS 252 (365)
Q Consensus 249 V~~a 252 (365)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=4.7e-13 Score=120.68 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=68.4
Q ss_pred cccEEEeeCCCCCC---------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCcee---
Q 017846 274 CSRTIYCTNIDKKV---------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL--- 340 (365)
Q Consensus 274 ~~~~l~V~nLp~~~---------te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l--- 340 (365)
..++|||+||+..+ ++++|+++|++ ||.|.+|+|+.+ +|||||+|.+.++|..|++ |+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 46899999999998 79999999999 599999999874 6799999999999999999 999999
Q ss_pred ---------CCeeeEEeecCCCCCCCCC
Q 017846 341 ---------GSLPIRLVSPSKTPVRPRA 359 (365)
Q Consensus 341 ---------~g~~l~~V~~a~~~~~~r~ 359 (365)
.|+.|. |.|++....+..
T Consensus 208 ~~~e~~~~~~gr~L~-V~wA~~~pnp~~ 234 (240)
T 3u1l_A 208 SDKEWDDRREGTGLL-VKWANEDPDPAA 234 (240)
T ss_dssp TSTTGGGGGGSCCCE-EEECC-------
T ss_pred ccccccccCCCCEEE-EEEccCCCCHHH
Confidence 899999 999987665543
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.39 E-value=8.1e-13 Score=104.32 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=67.6
Q ss_pred ccccEEEeeCC--CCCCC--------HHHHHHHhhhcCCceEEEEEeccCC----CcceEEEEEeCCHHHHHHHHH-hCC
Q 017846 273 MCSRTIYCTNI--DKKVT--------QGDIKLFFESVCGEVQRLRLLGDYQ----HSTRIAFVEFAMAESAIAALN-CSG 337 (365)
Q Consensus 273 ~~~~~l~V~nL--p~~~t--------e~~L~~~F~~~~G~I~~v~i~~d~~----~~kg~afV~F~~~~~A~~Al~-lng 337 (365)
.+++.|.|.|+ |..+. +++|++.|++ ||.|.+|.|+++.. .++|+|||+|.+.++|.+|+. |||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 35689999998 43443 4799999999 69999999998762 578999999999999999999 999
Q ss_pred ceeCCeeeEEeecCC
Q 017846 338 AVLGSLPIRLVSPSK 352 (365)
Q Consensus 338 ~~l~g~~l~~V~~a~ 352 (365)
+.|+||+|+ |.+..
T Consensus 82 ~~f~GR~i~-v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVV-TKYCD 95 (105)
T ss_dssp CEETTEECE-EEEEC
T ss_pred CEeCCCEEE-EEEeC
Confidence 999999999 98864
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.37 E-value=1.1e-12 Score=103.57 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=67.4
Q ss_pred CCcEEEEcCC--CCCCc--------HHHHHHHhhhCCCeeEEEEecCCC----CCceEEEEEeCCHHHHHHHHH-hCCce
Q 017846 177 IRRTVYVSDI--DQQVT--------EEQLATLFLTCGQVVDCRICGDPN----SVLRFAFVEFTDEEGARAALS-LAGTM 241 (365)
Q Consensus 177 ~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~d~~----~~kg~aFV~F~~~~~A~~Al~-l~g~~ 241 (365)
+++.|.+.|+ |.++. +++|++.|++||.|.+|+|++++. .++|||||+|.+.++|.+|++ |||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 43443 468999999999999999998874 368999999999999999998 99999
Q ss_pred eCCeeEEEeeCC
Q 017846 242 LGFYPVRVLPSK 253 (365)
Q Consensus 242 i~g~~l~V~~a~ 253 (365)
+.||.|+|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999863
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=1.3e-12 Score=105.19 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=68.0
Q ss_pred cccccEEEeeCCC--CCC---CHHHHHHHhhhcCCceEEEEEeccC------CCcceEEEEEeCCHHHHHHHHH-hCCce
Q 017846 272 EMCSRTIYCTNID--KKV---TQGDIKLFFESVCGEVQRLRLLGDY------QHSTRIAFVEFAMAESAIAALN-CSGAV 339 (365)
Q Consensus 272 ~~~~~~l~V~nLp--~~~---te~~L~~~F~~~~G~I~~v~i~~d~------~~~kg~afV~F~~~~~A~~Al~-lng~~ 339 (365)
..++++|+|.|+- ..+ .++||++.|++ ||.|.+|.|+++. +.++|++||+|.+.++|.+|+. |||+.
T Consensus 17 ~~ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 17 KQESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp HHSCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 3467999999983 222 36899999999 6999999999874 2467999999999999999999 99999
Q ss_pred eCCeeeEEeecCC
Q 017846 340 LGSLPIRLVSPSK 352 (365)
Q Consensus 340 l~g~~l~~V~~a~ 352 (365)
|+||+|+ |.+..
T Consensus 96 f~GR~i~-v~~~~ 107 (118)
T 3ue2_A 96 FAGRKVV-AEVYD 107 (118)
T ss_dssp ETTEECE-EEEEC
T ss_pred ECCcEEE-EEEcC
Confidence 9999999 98864
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.36 E-value=4.5e-13 Score=105.61 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=59.9
Q ss_pred eeCCCCCCCHHHHHHHh------------hhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 017846 280 CTNIDKKVTQGDIKLFF------------ESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPI 345 (365)
Q Consensus 280 V~nLp~~~te~~L~~~F------------~~~~G~I~~v~i~~d~-~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l 345 (365)
+.+||..+++++|++.| ++ ||.|.+|.|+++. ++++|||||+|.+.++|.+|+. |||..+.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~-~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEK-YGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34556666777666665 99 6999999999876 5789999999999999999999 99999999999
Q ss_pred EEeecC
Q 017846 346 RLVSPS 351 (365)
Q Consensus 346 ~~V~~a 351 (365)
+ |.|+
T Consensus 99 ~-v~~s 103 (104)
T 1jmt_A 99 H-AELS 103 (104)
T ss_dssp C-EEEC
T ss_pred E-EEEc
Confidence 9 9885
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1e-11 Score=96.95 Aligned_cols=68 Identities=24% Similarity=0.257 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCCCC
Q 017846 285 KKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSKTPVRPRA 359 (365)
Q Consensus 285 ~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~~~~~~r~ 359 (365)
..+++++|+++|++ ||.|..|.|++ .++|||||+|.+.++|..|+. +++ +.|++|+ |.|++++...++
T Consensus 27 ~~~te~~L~~~F~~-~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~-V~~a~~~~~~~~ 95 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK-ISWLEGQPQDAS 95 (100)
T ss_dssp CSCCHHHHHHHHHT-TSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE-EECSSCCCCCCS
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE-EEEccCCCCCCC
Confidence 56899999999999 69999999983 578999999999999999999 666 5799999 999988765444
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.31 E-value=5.2e-12 Score=101.72 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=67.3
Q ss_pred CCcEEEEcCCC--CCC---cHHHHHHHhhhCCCeeEEEEecCCC------CCceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 177 IRRTVYVSDID--QQV---TEEQLATLFLTCGQVVDCRICGDPN------SVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (365)
Q Consensus 177 ~~~~lfV~nLp--~~~---te~~L~~~F~~~G~i~~v~i~~d~~------~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g 244 (365)
.+++|++.|+- .++ -+++|++.|++||.|.+|+|++++. .++||+||+|.+.++|.+|++ |||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57889999983 222 3689999999999999999998753 257999999999999999998 99999999
Q ss_pred eeEEEeeCC
Q 017846 245 YPVRVLPSK 253 (365)
Q Consensus 245 ~~l~V~~a~ 253 (365)
|.|+|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999863
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=96.49 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=56.2
Q ss_pred CCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCCCC
Q 017846 188 QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 255 (365)
Q Consensus 188 ~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~~~ 255 (365)
..+++++|+++|++||.|.+|+|+. .++|||||+|.++++|.+|++ +++ +.|++|+|.|++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 6799999999999999999999983 568999999999999999998 554 67999999998644
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=1.1e-11 Score=117.46 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCCCcEEEEcC--CCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeC---Ce--e
Q 017846 175 EVIRRTVYVSD--IDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG---FY--P 246 (365)
Q Consensus 175 ~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~---g~--~ 246 (365)
...+++|||+| |+..+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++ |||..+. |+ +
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 44678999999 578999999999999999999988864 46999999999999999999 9999982 44 6
Q ss_pred EEEeeCC
Q 017846 247 VRVLPSK 253 (365)
Q Consensus 247 l~V~~a~ 253 (365)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777764
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=4.2e-11 Score=95.75 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCC--CCC--------cHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 176 VIRRTVYVSDID--QQV--------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 244 (365)
Q Consensus 176 ~~~~~lfV~nLp--~~~--------te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g 244 (365)
..++.|.+.|+= .+. -+++|++.|++||.|.+|.|.++. ++|||||+|.+.++|.+|++ |||..+.|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456788888873 221 136889999999999999997663 58999999999999999998 99999999
Q ss_pred eeEEEeeCC
Q 017846 245 YPVRVLPSK 253 (365)
Q Consensus 245 ~~l~V~~a~ 253 (365)
|.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999974
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=3.8e-11 Score=95.99 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=64.1
Q ss_pred cccEEEeeCCCCCC----------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 274 CSRTIYCTNIDKKV----------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (365)
Q Consensus 274 ~~~~l~V~nLp~~~----------te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g 342 (365)
++++|.|.|+=..- .++||++.|++ ||.|.+|.|.++. ++|+|||+|.+.++|.+|+. |||+.|+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k-fG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK-HGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT-TTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhc-cCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999983221 24689999999 6999999997764 68999999999999999999 99999999
Q ss_pred eeeEEeecCC
Q 017846 343 LPIRLVSPSK 352 (365)
Q Consensus 343 ~~l~~V~~a~ 352 (365)
+.|+ |.++.
T Consensus 83 R~i~-v~~~~ 91 (114)
T 3s6e_A 83 KMIT-AAYVP 91 (114)
T ss_dssp EECE-EEEEC
T ss_pred EEEE-EEEEc
Confidence 9999 98874
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=3.7e-11 Score=113.87 Aligned_cols=75 Identities=15% Similarity=0.270 Sum_probs=64.6
Q ss_pred cccccEEEeeC--CCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCcee---CCe--
Q 017846 272 EMCSRTIYCTN--IDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL---GSL-- 343 (365)
Q Consensus 272 ~~~~~~l~V~n--Lp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l---~g~-- 343 (365)
..++++|||+| |+..+||++|+++|++ ||.|.+|.+.+ +||||||+|.+.++|++|++ |||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45678999999 5789999999999999 69999998865 46899999999999999999 999987 244
Q ss_pred eeEEeecCC
Q 017846 344 PIRLVSPSK 352 (365)
Q Consensus 344 ~l~~V~~a~ 352 (365)
.|. |.+.+
T Consensus 90 ~ly-~~~~~ 97 (345)
T 3tht_A 90 TLY-LNFVE 97 (345)
T ss_dssp ECE-EEECS
T ss_pred EEE-EEEee
Confidence 677 77765
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1e-09 Score=82.89 Aligned_cols=72 Identities=25% Similarity=0.285 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCC----CCcH----HHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEE
Q 017846 177 IRRTVYVSDIDQ----QVTE----EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVR 248 (365)
Q Consensus 177 ~~~~lfV~nLp~----~~te----~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~ 248 (365)
...||+|.-++. ++-. .+|.+.|.+||.|..+++..|+ +||+|.+.++|.+|++|||..+.||.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 356788877662 2323 5789999999999999999975 8999999999999999999999999999
Q ss_pred EeeCCC
Q 017846 249 VLPSKT 254 (365)
Q Consensus 249 V~~a~~ 254 (365)
|..+++
T Consensus 80 V~lkt~ 85 (91)
T 2dnr_A 80 IALKSP 85 (91)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 999753
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-09 Score=82.30 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=62.8
Q ss_pred ccccEEEeeCCC----CCCCH----HHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCee
Q 017846 273 MCSRTIYCTNID----KKVTQ----GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLP 344 (365)
Q Consensus 273 ~~~~~l~V~nLp----~~~te----~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~ 344 (365)
++..||+|...+ .++-. .+|.+.|.+ ||.|..+++..+. +||+|.+.++|.+|++|||..++||.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHh-CCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 345788888766 23433 679999999 6999999999874 89999999999999999999999999
Q ss_pred eEEeecCCCC
Q 017846 345 IRLVSPSKTP 354 (365)
Q Consensus 345 l~~V~~a~~~ 354 (365)
|+ |.++.+-
T Consensus 78 Lk-V~lkt~d 86 (91)
T 2dnr_A 78 IT-IALKSPS 86 (91)
T ss_dssp EE-EEECCCS
T ss_pred EE-EEeCCCC
Confidence 99 9997754
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=2.2e-09 Score=86.13 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=65.1
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCC-HHHHHHHHH-h--CCceeCCeeEEEe
Q 017846 176 VIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD-EEGARAALS-L--AGTMLGFYPVRVL 250 (365)
Q Consensus 176 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~-~~~A~~Al~-l--~g~~i~g~~l~V~ 250 (365)
...+.|||+||+.+ +++++|+++|++||.|..|.+..+.. .|||.|.+ +.+|..|++ + .+..|.|..++++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 35678999999999 99999999999999999999999875 69999999 899999998 7 5778889888887
Q ss_pred eC
Q 017846 251 PS 252 (365)
Q Consensus 251 ~a 252 (365)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=4.7e-09 Score=84.24 Aligned_cols=72 Identities=11% Similarity=0.181 Sum_probs=63.6
Q ss_pred ccccEEEeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCC-HHHHHHHHH-hC--CceeCCeeeEE
Q 017846 273 MCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAM-AESAIAALN-CS--GAVLGSLPIRL 347 (365)
Q Consensus 273 ~~~~~l~V~nLp~~-~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~-~~~A~~Al~-ln--g~~l~g~~l~~ 347 (365)
..+..|||.||+.. +++++|+++|++ ||.|.+|.+.++.. .|||+|.+ .++|..|+. +| +..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~- 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT- 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE-
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE-
Confidence 45689999999999 999999999999 69999999998865 69999999 899999998 84 7788888887
Q ss_pred eec
Q 017846 348 VSP 350 (365)
Q Consensus 348 V~~ 350 (365)
+..
T Consensus 90 ~ev 92 (121)
T 1owx_A 90 WEV 92 (121)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=7e-09 Score=78.67 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=61.3
Q ss_pred CCcEEEEcCCCCC------CcH---HHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeE
Q 017846 177 IRRTVYVSDIDQQ------VTE---EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPV 247 (365)
Q Consensus 177 ~~~~lfV~nLp~~------~te---~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l 247 (365)
+..||+|.-++.+ .++ .+|.+.|.+||.|..+++..|+ +||+|.+.++|.+||+|+|..+.||.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L 87 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAV 87 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEE
Confidence 4678999988743 232 4688999999999999999985 999999999999999999999999999
Q ss_pred EEeeC
Q 017846 248 RVLPS 252 (365)
Q Consensus 248 ~V~~a 252 (365)
+|.+.
T Consensus 88 ~V~~k 92 (95)
T 1ufw_A 88 KISGP 92 (95)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99985
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.2e-08 Score=77.42 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=61.8
Q ss_pred cccccEEEeeCCCCC-----CCH----HHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCC
Q 017846 272 EMCSRTIYCTNIDKK-----VTQ----GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGS 342 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~-----~te----~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g 342 (365)
.++..||+|..++.. +-. .+|.+.|.+ ||.|..+++..++ +||+|.+.++|.+||.|||..++|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS-YGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH-HSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHH-CCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 345679999988642 322 569999999 5999999999884 899999999999999999999999
Q ss_pred eeeEEeecCC
Q 017846 343 LPIRLVSPSK 352 (365)
Q Consensus 343 ~~l~~V~~a~ 352 (365)
|.|+ |.+.-
T Consensus 85 r~L~-V~~k~ 93 (95)
T 1ufw_A 85 RAVK-ISGPS 93 (95)
T ss_dssp EEEE-EECCC
T ss_pred eEEE-EeccC
Confidence 9999 98743
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.66 E-value=3.6e-08 Score=87.81 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=58.0
Q ss_pred CCcHHHHHHHhhhCCCeeEEEEecCCC------CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeeCC
Q 017846 189 QVTEEQLATLFLTCGQVVDCRICGDPN------SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 253 (365)
Q Consensus 189 ~~te~~L~~~F~~~G~i~~v~i~~d~~------~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~~a~ 253 (365)
+-.+++|++.|++||.|.++.|+++.. .++|++||+|.+.++|.+|+. |||..+.||.|.|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 345689999999999999999986542 469999999999999999999 99999999999999863
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.64 E-value=4.2e-08 Score=87.33 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=57.5
Q ss_pred CCHHHHHHHhhhcCCceEEEEEeccC------CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 287 VTQGDIKLFFESVCGEVQRLRLLGDY------QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 287 ~te~~L~~~F~~~~G~I~~v~i~~d~------~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
-.+++|++.|++ ||.|.++.|+++. +.++|++||+|.+.++|.+|+. |||+.++||.|. +.+..
T Consensus 141 e~~~dl~~e~~~-~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~-~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVV-AEVYD 211 (222)
T ss_dssp THHHHHHHHHTT-TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE-EEECC
T ss_pred HHHHHHHHHHHc-cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEE-EEEcC
Confidence 457899999999 6999999998653 2689999999999999999999 999999999999 88864
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=3.9e-07 Score=70.50 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=64.5
Q ss_pred ccEEEeeCCCCCCCHHHHHHHhhhcC-----CceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 017846 275 SRTIYCTNIDKKVTQGDIKLFFESVC-----GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLV 348 (365)
Q Consensus 275 ~~~l~V~nLp~~~te~~L~~~F~~~~-----G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V 348 (365)
.++|-|.|||..+++..|+.+.++ | |.|..|.+.+|.+ -|+|+|.+...|.+|.. |+|.+|.|++|+ +
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~Lr-~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVIR-S 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEEE-E
T ss_pred CcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEEE-e
Confidence 589999999999999999999999 8 9999999999875 69999999999999998 999999999999 5
Q ss_pred e
Q 017846 349 S 349 (365)
Q Consensus 349 ~ 349 (365)
.
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 3
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.27 E-value=3.8e-06 Score=65.04 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=67.6
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhC-----CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHH-HhCCceeCCee
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTC-----GQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL-SLAGTMLGFYP 246 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al-~l~g~~i~g~~ 246 (365)
......++|-+-|||..+++..|+.+.+++ |.|..+.+..|.+ =|+|+|.+...|-+|. .|+|..|.|+.
T Consensus 16 ~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 16 NSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp CTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred CCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 334467899999999999999999999999 9999999999975 5999999999999987 59999999999
Q ss_pred EEEee
Q 017846 247 VRVLP 251 (365)
Q Consensus 247 l~V~~ 251 (365)
|+|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99864
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1.4e-05 Score=61.29 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhh---C--CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEe
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLT---C--GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 250 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~---~--G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g~~l~V~ 250 (365)
...++|.|.|||+.++++.|.-+|+. - |.|.+++... +-|+|+|.+.+.|++.|+...+.+.+.+|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 35678999999999999999999986 2 5788887765 36899999999999999987889999999998
Q ss_pred eCCCCCCCCCCCCCCCCchhhcccccEEEeeCCCCCCC
Q 017846 251 PSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVT 288 (365)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 288 (365)
+.. + ....+|++++|++.++
T Consensus 80 P~~-----------~-------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAP-----------P-------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp ECC-----------C-------CCCCCCCCCSCCCCCC
T ss_pred cCC-----------C-------CCcceEeeecCCCCCC
Confidence 852 2 2236799999998764
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.79 E-value=0.00016 Score=55.61 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=63.7
Q ss_pred cccEEEeeCCCCCC-C----HHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 017846 274 CSRTIYCTNIDKKV-T----QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRL 347 (365)
Q Consensus 274 ~~~~l~V~nLp~~~-t----e~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~ 347 (365)
..++|+|.||+..+ . .+.++++|.. |+.+.....++.-. -..|.|.+.++|.+|-. ||+..+.|++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~-~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r- 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRT-YDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMK- 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHT-TCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECE-
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHh-hCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeE-
Confidence 34789999998855 2 2577999999 69888888777532 57999999999999999 999999999999
Q ss_pred eecCCCCC
Q 017846 348 VSPSKTPV 355 (365)
Q Consensus 348 V~~a~~~~ 355 (365)
|.++++..
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99998654
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.0013 Score=50.30 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=60.3
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhh---c-CCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFES---V-CGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRLVS 349 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~---~-~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g~~l~~V~ 349 (365)
..++|.|.|||+.++++.|.-+|+. . -|.|..+.... +-|+|+|.+.+.|++.|.-..+.|.+.+|. |.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls-V~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLS-LR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE-EE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEE-EE
Confidence 4589999999999999999999996 2 35899998866 269999999999999998557889999999 65
Q ss_pred cC
Q 017846 350 PS 351 (365)
Q Consensus 350 ~a 351 (365)
..
T Consensus 80 P~ 81 (104)
T 2dhx_A 80 PA 81 (104)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.0013 Score=50.58 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCCCC-c----HHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 017846 177 IRRTVYVSDIDQQV-T----EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 250 (365)
Q Consensus 177 ~~~~lfV~nLp~~~-t----e~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~g~~i~g~~l~V~ 250 (365)
...+|+|.||+.++ . .+.++++|..|+++......+.-. -.-|.|.++++|.+|.. |++..+.|++|+|-
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 46789999998765 2 257899999999999888876543 46899999999999987 99999999999999
Q ss_pred eCC
Q 017846 251 PSK 253 (365)
Q Consensus 251 ~a~ 253 (365)
+++
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 986
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.17 E-value=0.002 Score=50.94 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=58.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCCceeCC-eeEEEeeC
Q 017846 177 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGF-YPVRVLPS 252 (365)
Q Consensus 177 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g~~i~g-~~l~V~~a 252 (365)
..+-|.|-+.|+.. ...+...|++||.|++...... ..+-.|.|.++.+|++||..||..+.| ..|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT----GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS----SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC----CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 45679999999885 5677889999999998887322 258999999999999999999999985 66777774
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.13 E-value=0.0021 Score=48.50 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=59.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC----CceEEEEEeCCHHHHHHHHH-hCCceeCC-----eeEE
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----VLRFAFVEFTDEEGARAALS-LAGTMLGF-----YPVR 248 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~----~kg~aFV~F~~~~~A~~Al~-l~g~~i~g-----~~l~ 248 (365)
.+|.|++||+.+||+++.+.+..+..+.....+..+.+ .-.-|||.|.+.+++....+ ++|+.+.+ .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 46899999999999999999999998877777654422 24679999999999999998 99998742 2345
Q ss_pred EeeC
Q 017846 249 VLPS 252 (365)
Q Consensus 249 V~~a 252 (365)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6665
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.12 E-value=0.0017 Score=49.10 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=48.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hC
Q 017846 174 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 238 (365)
Q Consensus 174 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~ 238 (365)
.+.....++| +.|+++...||.++|+.||. ..|+++-|- -|||.|.+++.|..|+. +.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-----EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 3445556777 99999999999999999995 457777663 79999999999999998 53
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.11 E-value=0.0035 Score=49.48 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=58.0
Q ss_pred cccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCC-eeeEEeecC
Q 017846 274 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGS-LPIRLVSPS 351 (365)
Q Consensus 274 ~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~lng~~l~g-~~l~~V~~a 351 (365)
....|.|.++|+.. -..|.+.|++ ||.|.+...... ..|-.|.|.++.+|++||..||..|+| ..|- |.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIG-V~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHVMSNT----GNWMHIRYQSKLQARKALSKDGRIFGESIMIG-VKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEEECSS----SSEEEEEESSHHHHHHHHTTTTCEETTTEECE-EEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHh-hCcEEEeccCCC----CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEE-EEEC
Confidence 45789999999985 6678888888 699998887322 249999999999999999999999985 6666 6664
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.11 E-value=0.0023 Score=48.22 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=54.1
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC----CCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY----QHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~----~~~kg~afV~F~~~~~A~~Al~-lng~~l~g 342 (365)
..|.|++||+.+||+++++.+++ +..+........+ ...-.-|||.|.+.+++..-.+ ++|+.|-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~-~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQP-MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCS-CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcC-cccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 46899999999999999999999 5887777665544 1233469999999999999999 99998733
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.67 E-value=0.0041 Score=47.05 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=44.0
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 336 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-ln 336 (365)
..++| .+|+++...||.++|++ ||.| .|+.+-|. .|||.|.+++.|..|+. ++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~-fggv-~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSA-FGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTT-TCSC-CCEEEETT-----EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhc-cCCE-EEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 45556 99999999999999999 5844 46666653 79999999999999998 63
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.47 E-value=0.0034 Score=47.66 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=44.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hC
Q 017846 180 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 238 (365)
Q Consensus 180 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~ 238 (365)
.++| ++|+++...||.++|+.|| -..|+++-|- -|||.|.+++.|..|+. +.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 4555 9999999999999999999 4567777763 79999999999999998 54
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.15 E-value=0.0094 Score=47.72 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=54.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhCCCeeE-EEEec--------------CCC-CCceEEEEEeCCHHHHHHHHHhCCcee
Q 017846 179 RTVYVSDIDQQVTEEQLATLFLTCGQVVD-CRICG--------------DPN-SVLRFAFVEFTDEEGARAALSLAGTML 242 (365)
Q Consensus 179 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~--------------d~~-~~kg~aFV~F~~~~~A~~Al~l~g~~i 242 (365)
.-|.|-+.|++.+. .+.+.|++||.|.+ ..... -+. +...+-.|+|.++.+|.+||..||..+
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 34777788666554 56678999999876 22111 000 124588999999999999999999999
Q ss_pred CCeeEEEeeC
Q 017846 243 GFYPVRVLPS 252 (365)
Q Consensus 243 ~g~~l~V~~a 252 (365)
.|..|-|.+.
T Consensus 87 ~G~mIGV~Py 96 (132)
T 3p3d_A 87 NGVLLGVIPY 96 (132)
T ss_dssp TTEECEEEEC
T ss_pred CcEEEEEEEC
Confidence 9998888885
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.09 E-value=0.0092 Score=45.29 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=43.7
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 336 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-ln 336 (365)
.++| ++|+++...||.++|++ || -..|+.+-|. .|||.|.+++.|..|+. +.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~-fg-gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSA-FG-NIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTT-SE-EEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhc-cC-CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999 58 4457776664 79999999999999998 64
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.64 E-value=0.0066 Score=59.31 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=47.9
Q ss_pred cCCCCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhCC
Q 017846 173 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAG 239 (365)
Q Consensus 173 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~l~g 239 (365)
+.....++|||. .|..+++.+|.++|++||.|.++.+-.+++ -||.|+|.+.+++..++...+
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCC
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccC
Confidence 344456789998 799999999999999999999999887765 699999999999998876433
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.63 E-value=0.0095 Score=45.22 Aligned_cols=66 Identities=8% Similarity=0.164 Sum_probs=49.6
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC----CCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY----QHSTRIAFVEFAMAESAIAALN-CSGAVLGS 342 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~----~~~kg~afV~F~~~~~A~~Al~-lng~~l~g 342 (365)
-.|.|+.||+.+||+++.+.+++. -.+........+ ...-.-|||.|.+.++...-.+ .+|..|-+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPL-PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCC-SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCc-CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 569999999999999999999884 455443333322 1122358999999999999999 99998733
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.52 E-value=0.024 Score=45.33 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=53.9
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEE-EEEec--------------cCC-CcceEEEEEeCCHHHHHHHHHhCCce
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LRLLG--------------DYQ-HSTRIAFVEFAMAESAIAALNCSGAV 339 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~-v~i~~--------------d~~-~~kg~afV~F~~~~~A~~Al~lng~~ 339 (365)
.-|.|.+.|+.. ...+.+.|++ ||.|.. +...+ -+. ....|-.|+|.++.+|.+||..||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGG-GSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHh-hceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 458888997765 4567788888 599876 22211 000 13459999999999999999999999
Q ss_pred eCCeeeEEeecC
Q 017846 340 LGSLPIRLVSPS 351 (365)
Q Consensus 340 l~g~~l~~V~~a 351 (365)
|+|.-|- |.+.
T Consensus 86 i~G~mIG-V~Py 96 (132)
T 3p3d_A 86 FNGVLLG-VIPY 96 (132)
T ss_dssp ETTEECE-EEEC
T ss_pred eCcEEEE-EEEC
Confidence 9999888 6554
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.38 E-value=0.013 Score=44.48 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=53.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCC----CceEEEEEeCCHHHHHHHHH-hCCceeCC-----eeE
Q 017846 178 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----VLRFAFVEFTDEEGARAALS-LAGTMLGF-----YPV 247 (365)
Q Consensus 178 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~----~kg~aFV~F~~~~~A~~Al~-l~g~~i~g-----~~l 247 (365)
.-+|.|+.||+.+||+++.+.+..+-.+.....+..+.+ .-.-|||.|.+.+++....+ ++|..+-+ .+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457999999999999998888876655433333222211 13568999999999999998 99988742 245
Q ss_pred EEeeC
Q 017846 248 RVLPS 252 (365)
Q Consensus 248 ~V~~a 252 (365)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56665
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.82 E-value=0.016 Score=56.66 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=44.9
Q ss_pred cccccEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 017846 272 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334 (365)
Q Consensus 272 ~~~~~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~ 334 (365)
....+.|+|. .|...++.+|.++|++| |.|.++....+.| -||.|+|.+.+++..++.
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~-g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQF-GPINNHFFYESFG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGG-SCCCCEEEECSSS---EEEEEECC---CCHHHHS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhc-CCcceEEEEccCC---eEEEEEeCCHHHHHHHHh
Confidence 4456899998 68899999999999995 9999999988765 699999999999997766
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.37 E-value=1.3 Score=43.71 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=45.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhhCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hC
Q 017846 176 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 238 (365)
Q Consensus 176 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~kg~aFV~F~~~~~A~~Al~-l~ 238 (365)
.....++|+ +|..+...+|.++|+.||. .+|+++-| ..|||.|.+.+.|..++. +.
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-----SEEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-----CeEEEEECCHHHHHHHHHHHH
Confidence 344567776 9999999999999999995 46666655 379999999999999998 64
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=77.82 E-value=6.1 Score=38.90 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=43.1
Q ss_pred cEEEeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC
Q 017846 276 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG 337 (365)
Q Consensus 276 ~~l~V~nLp~~~te~~L~~~F~~~~G~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng 337 (365)
..++|+ +|..+...+|.++|+.| |.+ +|+.+-+. .|||.|.+.+.|..++. ++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~f-g~v-~V~widdt-----~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAF-GNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGG-CCC-EEEECSSS-----EEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhc-CCE-EEEEEcCC-----eEEEEECCHHHHHHHHHHHHh
Confidence 455665 99999999999999995 854 56655442 69999999999999998 753
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.04 E-value=36 Score=28.22 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=39.9
Q ss_pred EEEEcCCCC-C--------CcHHHHHHHh--hhCCCeeEEEEecCCCCCceEEEEEeCCH-HHHHHHHHh
Q 017846 180 TVYVSDIDQ-Q--------VTEEQLATLF--LTCGQVVDCRICGDPNSVLRFAFVEFTDE-EGARAALSL 237 (365)
Q Consensus 180 ~lfV~nLp~-~--------~te~~L~~~F--~~~G~i~~v~i~~d~~~~kg~aFV~F~~~-~~A~~Al~l 237 (365)
++.|-|+|. . .+..+|++.| ..|..+. ++.+..+..++|++.|.|.+. .--..|+.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 467778776 2 3457899977 8998865 666666666789999999763 333445553
No 404
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.60 E-value=76 Score=22.99 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=40.8
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 334 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~ 334 (365)
.-|+--.+...+..+|++.++.+|| .|..|..+.-+.. .--|||++....+|....+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~-~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG-EKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS-CEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC-ceEEEEEcCCCCcHHHHHH
Confidence 3444556778999999999999888 7888877654321 2259999988777665433
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=33.28 E-value=32 Score=23.81 Aligned_cols=59 Identities=12% Similarity=0.238 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhhhcCC----ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 017846 286 KVTQGDIKLFFESVCG----EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRLVSPSK 352 (365)
Q Consensus 286 ~~te~~L~~~F~~~~G----~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al~-lng~~l~g~~l~~V~~a~ 352 (365)
.+...+|..++..-.| .|=.|.|..+ |.||+-.. +.|..++. |++..+.|+++. |..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~-v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN------ASYVEILN-GKGPHVLKVMKNTTVKGKQLK-VNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS------CEEEEECT-TCHHHHHHHHTTCCC---CCC-EEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC------cEEEEECH-HHHHHHHHHhccccCcCceEE-EEECC
Confidence 3555666666664323 4556777543 78998876 55777777 889999999998 87654
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.21 E-value=71 Score=26.43 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=33.1
Q ss_pred EEEeeCCCC---------CCCHHHHHHHh--hhcCCceEEEEEeccCCCcceEEEEEeCCH
Q 017846 277 TIYCTNIDK---------KVTQGDIKLFF--ESVCGEVQRLRLLGDYQHSTRIAFVEFAMA 326 (365)
Q Consensus 277 ~l~V~nLp~---------~~te~~L~~~F--~~~~G~I~~v~i~~d~~~~kg~afV~F~~~ 326 (365)
++.|.|+|. ..+..+|++.| ..| ..+. |+.+-++...+|+|.|.|...
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F-~p~k-v~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGF-NPTR-VRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTC-CCSE-EEEEECSSBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCC-CCce-eEecccCCCCceeEEEEecCC
Confidence 466677765 13457899977 875 6554 555555555889999999873
No 407
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.27 E-value=1.1e+02 Score=22.11 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=39.7
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 333 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al 333 (365)
.-|+-..+...+..+|++.++.+|| .|..|..+.-+. ..--|+|++....+|....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-GEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SSEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-CceEEEEEECCCCcHHHHH
Confidence 3455556788999999999998778 788887665442 1225999998766655443
No 408
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=22.02 E-value=1.3e+02 Score=24.08 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=40.1
Q ss_pred EEEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 017846 277 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 333 (365)
Q Consensus 277 ~l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al 333 (365)
.-|+--.+...+..+|++.++.+|| .|..|..+.-++.- --|||++....+|....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~-KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGT-KKAYVRLTADYDALDIA 136 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSC-EEEEEEECTTCCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-eEEEEEeCCCCcHHHHH
Confidence 3445556778999999999998778 78888776554322 25999998766665543
No 409
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=21.04 E-value=1.3e+02 Score=24.18 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=39.3
Q ss_pred EEeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 017846 278 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 333 (365)
Q Consensus 278 l~V~nLp~~~te~~L~~~F~~~~G-~I~~v~i~~d~~~~kg~afV~F~~~~~A~~Al 333 (365)
-|+--.+...+..+|++.++.+|| .|..|..+.-++.- --|||++....+|....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~-KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGN-KKAYIRLAADSDSLTLA 144 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSC-EEEEEEECSSSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-EEEEEEcCCCCcHHHHH
Confidence 444446778999999999998778 78888776554322 25999998766665543
Done!