Query 017847
Match_columns 365
No_of_seqs 332 out of 1022
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 05:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v31_A Hypothetical protein RA 100.0 1.3E-29 4.6E-34 207.1 6.9 88 249-336 4-91 (93)
2 1v31_A Hypothetical protein RA 100.0 2.2E-29 7.4E-34 205.9 6.3 86 107-192 6-91 (93)
3 1uhr_A SWI/SNF related, matrix 99.9 5.4E-29 1.9E-33 203.5 4.8 86 252-337 7-92 (93)
4 1uhr_A SWI/SNF related, matrix 99.9 8.4E-29 2.9E-33 202.4 4.3 84 109-192 8-91 (93)
5 1v32_A AT5G08430, hypothetical 99.9 1E-25 3.5E-30 186.7 7.1 74 114-187 15-94 (101)
6 1v32_A AT5G08430, hypothetical 99.9 1.8E-25 6E-30 185.2 7.5 76 257-332 14-95 (101)
7 1q1v_A DEK protein; winged-hel 99.7 1.3E-16 4.6E-21 123.8 6.9 56 1-56 11-67 (70)
8 3dac_M MDM4 protein; MDMX, MDM 97.5 0.00011 3.7E-09 62.5 4.8 80 257-336 25-113 (130)
9 3fea_A MDM4 protein; HDMX, HDM 97.1 0.00027 9.3E-09 57.8 3.6 75 257-331 16-99 (100)
10 1z1m_A Ubiquitin-protein ligas 96.9 0.0017 5.8E-08 54.6 6.6 74 256-329 27-106 (119)
11 2z5s_M MDM4 protein, zebrafish 96.9 0.0014 4.8E-08 56.1 6.1 76 256-331 23-107 (140)
12 1ycq_A MDM2, MDM2; anti-oncoge 96.9 0.0014 4.9E-08 54.1 5.9 75 256-330 11-94 (107)
13 3dac_M MDM4 protein; MDMX, MDM 96.7 0.0014 4.7E-08 55.8 4.4 74 115-188 27-109 (130)
14 2axi_A Ubiquitin-protein ligas 96.5 0.0017 6E-08 54.1 3.8 70 257-326 12-87 (115)
15 3fea_A MDM4 protein; HDMX, HDM 96.3 0.0027 9.3E-08 51.9 3.5 72 115-186 18-98 (100)
16 1z1m_A Ubiquitin-protein ligas 96.3 0.0063 2.1E-07 51.1 5.8 76 113-188 28-109 (119)
17 1ycq_A MDM2, MDM2; anti-oncoge 95.9 0.0084 2.9E-07 49.6 4.8 71 114-184 13-89 (107)
18 2z5s_M MDM4 protein, zebrafish 95.9 0.0088 3E-07 51.2 4.9 76 112-187 23-107 (140)
19 2axi_A Ubiquitin-protein ligas 95.4 0.0072 2.5E-07 50.4 2.5 72 114-185 13-90 (115)
20 2kwl_A ACP, acyl carrier prote 70.4 3.6 0.00012 30.7 3.5 58 268-328 1-58 (84)
21 2kwl_A ACP, acyl carrier prote 68.0 3.3 0.00011 31.0 2.8 58 124-184 1-58 (84)
22 1f80_D Acyl carrier protein; t 50.7 10 0.00036 27.7 2.9 55 271-328 2-56 (81)
23 2dnw_A Acyl carrier protein; A 46.5 16 0.00054 28.3 3.4 60 266-328 5-64 (99)
24 2dnw_A Acyl carrier protein; A 45.8 13 0.00043 28.9 2.7 60 122-184 5-64 (99)
25 1f80_D Acyl carrier protein; t 45.5 13 0.00045 27.1 2.7 55 127-184 2-56 (81)
26 2cnr_A FAS, ACP, acyl carrier 44.1 26 0.00087 25.5 4.1 54 272-328 3-56 (82)
27 2keb_A DNA polymerase subunit 44.0 27 0.00094 28.4 4.5 43 12-57 15-57 (101)
28 2lol_A ACP, acyl carrier prote 43.5 22 0.00074 25.9 3.6 54 272-328 2-55 (81)
29 2cnr_A FAS, ACP, acyl carrier 39.0 30 0.001 25.0 3.8 54 128-184 3-56 (82)
30 2lol_A ACP, acyl carrier prote 36.4 29 0.001 25.2 3.4 54 128-184 2-55 (81)
31 1x3o_A Acyl carrier protein; s 36.2 17 0.00059 26.2 2.0 54 272-328 1-54 (80)
32 2cg5_B Fatty acid synthase; tr 36.0 23 0.0008 27.8 2.9 40 5-44 9-62 (91)
33 3ce7_A Specific mitochodrial a 35.7 35 0.0012 27.2 4.0 42 1-42 12-77 (107)
34 1dv5_A APO-DCP, APO-D-alanyl c 34.9 25 0.00087 26.0 2.8 53 273-328 1-53 (80)
35 2ahq_A Sigma-54, RNA polymeras 30.3 55 0.0019 25.1 4.1 40 2-42 16-56 (76)
36 2jq4_A AGR_C_4658P, hypothetic 29.1 44 0.0015 26.4 3.5 44 2-45 18-80 (105)
37 1dd4_C 50S ribosomal protein L 28.9 35 0.0012 23.1 2.4 22 19-40 12-33 (40)
38 2l4b_A Acyl carrier protein; i 28.6 9.9 0.00034 28.6 -0.5 57 271-328 3-60 (88)
39 1klp_A ACP, ACPM, meromycolate 28.2 47 0.0016 26.3 3.6 55 271-328 2-56 (115)
40 2ava_A ACP I, acyl carrier pro 27.4 57 0.0019 23.7 3.7 53 273-328 1-53 (82)
41 1x3o_A Acyl carrier protein; s 26.8 24 0.00084 25.4 1.5 54 128-184 1-54 (80)
42 1nq4_A Oxytetracycline polyket 26.1 81 0.0028 24.1 4.5 42 3-44 5-63 (95)
43 1klp_A ACP, ACPM, meromycolate 24.4 53 0.0018 26.0 3.2 55 127-184 2-56 (115)
44 2cgq_A Acyl carrier protein AC 24.0 31 0.0011 28.0 1.7 52 268-328 23-74 (113)
45 3e6c_C CPRK, cyclic nucleotide 23.9 37 0.0013 29.6 2.4 53 256-312 175-229 (250)
46 2do1_A Nuclear protein HCC-1; 23.6 1.5E+02 0.0053 21.2 5.2 40 17-57 7-46 (55)
47 1af8_A Actinorhodin polyketide 23.2 54 0.0018 24.1 2.8 51 277-328 6-57 (86)
48 1dv5_A APO-DCP, APO-D-alanyl c 23.1 48 0.0016 24.4 2.5 53 129-184 1-53 (80)
49 1vku_A Acyl carrier protein; T 23.1 60 0.0021 25.5 3.2 55 270-328 11-65 (100)
50 2l4b_A Acyl carrier protein; i 21.5 14 0.00046 27.8 -0.9 55 127-184 3-60 (88)
51 1vku_A Acyl carrier protein; T 21.2 66 0.0022 25.2 3.1 55 126-184 11-65 (100)
52 2jq4_A AGR_C_4658P, hypothetic 20.9 47 0.0016 26.2 2.2 56 271-328 17-72 (105)
53 2ava_A ACP I, acyl carrier pro 20.7 94 0.0032 22.4 3.7 53 129-184 1-53 (82)
54 2kjs_A Putative acyl carrier p 20.1 1.2E+02 0.004 23.2 4.2 44 1-44 1-58 (87)
55 1v54_E Cytochrome C oxidase po 20.0 1.5E+02 0.005 24.4 4.9 47 3-52 7-53 (109)
No 1
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.96 E-value=1.3e-29 Score=207.08 Aligned_cols=88 Identities=22% Similarity=0.496 Sum_probs=84.7
Q ss_pred CCCCCcccccCCHHHHhhhCCCcccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 249 RRGGFTKLCSLSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 249 ~~~g~~~~~~LS~~La~flG~~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
+..+++.+|.||++||+|||..++||++|+++||+|||.||||||.|++.|+||++|+.|||+++|.||+|+++|++||.
T Consensus 4 ~~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~ 83 (93)
T 1v31_A 4 GSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLS 83 (93)
T ss_dssp SCCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCB
T ss_pred CCCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc
Q 017847 329 PLDEADAK 336 (365)
Q Consensus 329 p~~pi~~~ 336 (365)
|++||.+.
T Consensus 84 p~~Pi~~~ 91 (93)
T 1v31_A 84 PPPPSGPS 91 (93)
T ss_dssp CCCCSSCC
T ss_pred CCCCeeCC
Confidence 99999875
No 2
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.95 E-value=2.2e-29 Score=205.86 Aligned_cols=86 Identities=29% Similarity=0.549 Sum_probs=82.8
Q ss_pred CCCCccccCcHHHHhhhCCCCccHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCCCC
Q 017847 107 GGFNKLCSLSTQLQKVVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIWPL 186 (365)
Q Consensus 107 ~g~~k~~~LSp~La~~lG~~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~p~ 186 (365)
.+++.+|.|||+||+|||..++||++||++||+|||.||||||+|||.|+||++|+.|||+++|.||+|+++|++||.|+
T Consensus 6 ~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p~ 85 (93)
T 1v31_A 6 SGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPP 85 (93)
T ss_dssp CSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBCC
T ss_pred CCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 017847 187 GAEDEN 192 (365)
Q Consensus 187 ~p~~~~ 192 (365)
+|+.+.
T Consensus 86 ~Pi~~~ 91 (93)
T 1v31_A 86 PPSGPS 91 (93)
T ss_dssp CCSSCC
T ss_pred CCeeCC
Confidence 999874
No 3
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.95 E-value=5.4e-29 Score=203.51 Aligned_cols=86 Identities=27% Similarity=0.589 Sum_probs=82.7
Q ss_pred CCcccccCCHHHHhhhCCCcccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCCCCC
Q 017847 252 GFTKLCSLSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWPLD 331 (365)
Q Consensus 252 g~~~~~~LS~~La~flG~~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~p~~ 331 (365)
..+.+|.||++||+|||..++||++|+++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++||.|++
T Consensus 7 ~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1uhr_A 7 GQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPE 86 (93)
T ss_dssp SSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSS
T ss_pred cCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 017847 332 EADAKS 337 (365)
Q Consensus 332 pi~~~~ 337 (365)
||.+.+
T Consensus 87 PI~i~~ 92 (93)
T 1uhr_A 87 PSGPSS 92 (93)
T ss_dssp CCCSSC
T ss_pred CeeCCC
Confidence 999864
No 4
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.95 E-value=8.4e-29 Score=202.39 Aligned_cols=84 Identities=26% Similarity=0.526 Sum_probs=80.8
Q ss_pred CCccccCcHHHHhhhCCCCccHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCCCCCC
Q 017847 109 FNKLCSLSTQLQKVVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIWPLGA 188 (365)
Q Consensus 109 ~~k~~~LSp~La~~lG~~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~p~~p 188 (365)
.+.+|.|||+||+|||..++||++||++||+|||.||||||.|||.|+||++|+.|||+++|.||+|+++|++||.|++|
T Consensus 8 ~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~P 87 (93)
T 1uhr_A 8 QPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 87 (93)
T ss_dssp SCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSSC
T ss_pred CCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 017847 189 EDEN 192 (365)
Q Consensus 189 ~~~~ 192 (365)
+.+.
T Consensus 88 I~i~ 91 (93)
T 1uhr_A 88 SGPS 91 (93)
T ss_dssp CCSS
T ss_pred eeCC
Confidence 9874
No 5
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.92 E-value=1e-25 Score=186.68 Aligned_cols=74 Identities=34% Similarity=0.478 Sum_probs=70.7
Q ss_pred cCcHHHHhhh---CC---CCccHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCCCCC
Q 017847 114 SLSTQLQKVV---GA---PELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIWPLG 187 (365)
Q Consensus 114 ~LSp~La~~l---G~---~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~p~~ 187 (365)
.+||+|++|| |. .++||++||++||+|||.||||||.|||.|+||++|+.|||+++|+||+|+++|++||.+..
T Consensus 15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~~ 94 (101)
T 1v32_A 15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQ 94 (101)
T ss_dssp SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSCC
T ss_pred cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCccc
Confidence 5899999999 98 57999999999999999999999999999999999999999999999999999999998753
No 6
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.92 E-value=1.8e-25 Score=185.25 Aligned_cols=76 Identities=26% Similarity=0.467 Sum_probs=72.1
Q ss_pred ccCCHHHHhhh---CC---CcccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCCCC
Q 017847 257 CSLSPDLQTFV---GV---SELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWPL 330 (365)
Q Consensus 257 ~~LS~~La~fl---G~---~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~p~ 330 (365)
-.+|++|++|| |. .++||++|+++||+|||.||||||.|||.|+||++|+.|||+++|.||+|+++|++||.+.
T Consensus 14 ~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~ 93 (101)
T 1v32_A 14 GWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKEN 93 (101)
T ss_dssp SSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSC
T ss_pred ccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCcc
Confidence 36999999999 88 5799999999999999999999999999999999999999999999999999999999987
Q ss_pred Cc
Q 017847 331 DE 332 (365)
Q Consensus 331 ~p 332 (365)
+.
T Consensus 94 ~e 95 (101)
T 1v32_A 94 QD 95 (101)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 7
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=99.65 E-value=1.3e-16 Score=123.81 Aligned_cols=56 Identities=20% Similarity=0.464 Sum_probs=55.0
Q ss_pred CCChhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh-CCCChhhHHHHHHHHHHHHh
Q 017847 1 MVSDSDLVTRLRDILRNSDLDTATAGSVRRLLEEDF-KVDLSDRKAFVSEQIDLFLQ 56 (365)
Q Consensus 1 mvsd~ei~~~I~~IL~~sDl~tvT~k~VR~~LE~~f-GvDLs~kK~~I~~~I~~~l~ 56 (365)
||||++|...|++||++|||++||.|+||++|++.| |+||+++|+||+.+|+.||+
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L~ 67 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKELIS 67 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999 99999999999999999996
No 8
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=97.45 E-value=0.00011 Score=62.53 Aligned_cols=80 Identities=25% Similarity=0.371 Sum_probs=65.8
Q ss_pred ccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHhhCCCCCCCCCccccc-hhhhhhhccCccChhh---HHHHHHccC
Q 017847 257 CSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQ---MNKALTRHI 327 (365)
Q Consensus 257 ~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD-~kLk~lFg~d~i~~~~---i~klL~~Hl 327 (365)
++--++|-.+| |. ...|..+|+..+=+||-.+.|.||.+..+|.|- +.|..+|||++|++.+ +..+|.++|
T Consensus 25 Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NL 104 (130)
T 3dac_M 25 VHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNL 104 (130)
T ss_dssp EEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhhe
Confidence 34456677776 54 489999999999999999999999999999996 8899999999999998 999999999
Q ss_pred CCCCccccc
Q 017847 328 WPLDEADAK 336 (365)
Q Consensus 328 ~p~~pi~~~ 336 (365)
.++...+.+
T Consensus 105 v~~~~~~a~ 113 (130)
T 3dac_M 105 VILNNSDAA 113 (130)
T ss_dssp EEC------
T ss_pred ecccCcchH
Confidence 998865554
No 9
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=97.13 E-value=0.00027 Score=57.80 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=63.3
Q ss_pred ccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHhhCCCCCCCCCccccc-hhhhhhhccCccChh---hHHHHHHccC
Q 017847 257 CSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMF---QMNKALTRHI 327 (365)
Q Consensus 257 ~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD-~kLk~lFg~d~i~~~---~i~klL~~Hl 327 (365)
++--++|-.+| |. +..|..+|+..+=+||-.+.|.||.+..+|.|. +.|..+||+++|++. .+.++|.+||
T Consensus 16 Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nL 95 (100)
T 3fea_A 16 VRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNL 95 (100)
T ss_dssp BEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhc
Confidence 33446666666 54 489999999999999999999999999999996 789999999999998 8889999998
Q ss_pred CCCC
Q 017847 328 WPLD 331 (365)
Q Consensus 328 ~p~~ 331 (365)
..+.
T Consensus 96 v~~~ 99 (100)
T 3fea_A 96 VTLA 99 (100)
T ss_dssp EC--
T ss_pred eecC
Confidence 7653
No 10
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.93 E-value=0.0017 Score=54.56 Aligned_cols=74 Identities=28% Similarity=0.332 Sum_probs=60.6
Q ss_pred cccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHhhCCCCCCCCCccccc-hhhhhhhccCccChhhHHHHHHccCCC
Q 017847 256 LCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMNKALTRHIWP 329 (365)
Q Consensus 256 ~~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD-~kLk~lFg~d~i~~~~i~klL~~Hl~p 329 (365)
.++-.+.|-.|| |. ...|..+|+..+=+||-.+.|.|+.+..+|.|. +.|..||||.+|++-+...+...|..-
T Consensus 27 ~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 106 (119)
T 1z1m_A 27 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRN 106 (119)
T ss_dssp CCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCS
T ss_pred cccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 455556666666 54 478999999999999999999999999999997 778999999999998766666555443
No 11
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=96.91 E-value=0.0014 Score=56.13 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=64.9
Q ss_pred cccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHhhCCCCCCCCCccccc-hhhhhhhccCccChhhHH---HHHHcc
Q 017847 256 LCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMN---KALTRH 326 (365)
Q Consensus 256 ~~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD-~kLk~lFg~d~i~~~~i~---klL~~H 326 (365)
.++--+.|-.|| |. ...|+-+|+..|=+||-.+.|.|+.+..+|.|. +.|..||||.+|++-+.. ++|.+-
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 666678888887 54 489999999999999999999999999999997 778999999999998655 677777
Q ss_pred CCCCC
Q 017847 327 IWPLD 331 (365)
Q Consensus 327 l~p~~ 331 (365)
|.+..
T Consensus 103 Lv~~~ 107 (140)
T 2z5s_M 103 LVILN 107 (140)
T ss_dssp EECC-
T ss_pred ccccc
Confidence 76666
No 12
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=96.90 E-value=0.0014 Score=54.12 Aligned_cols=75 Identities=25% Similarity=0.420 Sum_probs=60.5
Q ss_pred cccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHhhCCCCCCCCCccccc-hhhhhhhccCccChhhHH---HHHHcc
Q 017847 256 LCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMN---KALTRH 326 (365)
Q Consensus 256 ~~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD-~kLk~lFg~d~i~~~~i~---klL~~H 326 (365)
.++-.+.|-.+| |. ...|+.+|+..|=+||-.+.|.|+.+..+|.|. +.|..||||.+|++.+.. ++|.+.
T Consensus 11 ~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (107)
T 1ycq_A 11 LVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRN 90 (107)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 344456666666 44 478999999999999999999999999999997 778999999999998777 555555
Q ss_pred CCCC
Q 017847 327 IWPL 330 (365)
Q Consensus 327 l~p~ 330 (365)
+.+.
T Consensus 91 Lv~~ 94 (107)
T 1ycq_A 91 LVSA 94 (107)
T ss_dssp EEES
T ss_pred cccc
Confidence 5443
No 13
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.69 E-value=0.0014 Score=55.81 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=64.0
Q ss_pred CcHHHHhhh---CC--CCccHHHHHHHHHHHHHhcCCCCCCCCCcccCC-hhHHhhhccCccChhh---HHHHHHccCCC
Q 017847 115 LSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFK---MNRALSKHIWP 185 (365)
Q Consensus 115 LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~~~i~~~~---m~k~L~~Hl~p 185 (365)
--+.|-.|| |. ...|..+|+-.|=+||-.+.|.||.+...|.|- +.|..+||+++|++.+ +...|.++|.+
T Consensus 27 pk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NLv~ 106 (130)
T 3dac_M 27 PRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNLVI 106 (130)
T ss_dssp ECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHEEE
T ss_pred CcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhheec
Confidence 345666665 64 578999999999999999999999999999996 7899999999999998 99999999988
Q ss_pred CCC
Q 017847 186 LGA 188 (365)
Q Consensus 186 ~~p 188 (365)
+..
T Consensus 107 ~~~ 109 (130)
T 3dac_M 107 LNN 109 (130)
T ss_dssp C--
T ss_pred ccC
Confidence 764
No 14
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=96.51 E-value=0.0017 Score=54.13 Aligned_cols=70 Identities=29% Similarity=0.347 Sum_probs=57.6
Q ss_pred ccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHhhCCCCCCCCCccccc-hhhhhhhccCccChhhHHHHHHcc
Q 017847 257 CSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMNKALTRH 326 (365)
Q Consensus 257 ~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD-~kLk~lFg~d~i~~~~i~klL~~H 326 (365)
++-.+.|-.+| |. ...|..+|+-.+=+||-.+.|.|+.+..+|.|. +.|..||||.+|++-+...+...|
T Consensus 12 VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml 87 (115)
T 2axi_A 12 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMI 87 (115)
T ss_dssp EEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHH
T ss_pred cCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHH
Confidence 34456666666 44 478999999999999999999999999999997 778999999999998766555444
No 15
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=96.27 E-value=0.0027 Score=51.91 Aligned_cols=72 Identities=26% Similarity=0.387 Sum_probs=61.5
Q ss_pred CcHHHHhhh---CC--CCccHHHHHHHHHHHHHhcCCCCCCCCCcccCC-hhHHhhhccCccChh---hHHHHHHccCCC
Q 017847 115 LSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMF---KMNRALSKHIWP 185 (365)
Q Consensus 115 LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~~~i~~~---~m~k~L~~Hl~p 185 (365)
--+.|-.|| |. ...|..+|+..|=+||-.+.|.||.+...|.|- +.|-.+||+++|++. .+...|.+||..
T Consensus 18 pk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nLv~ 97 (100)
T 3fea_A 18 PKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVT 97 (100)
T ss_dssp ECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHEEC
T ss_pred CcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhcee
Confidence 345666665 65 578999999999999999999999999999996 788999999999888 888999998866
Q ss_pred C
Q 017847 186 L 186 (365)
Q Consensus 186 ~ 186 (365)
+
T Consensus 98 ~ 98 (100)
T 3fea_A 98 L 98 (100)
T ss_dssp -
T ss_pred c
Confidence 4
No 16
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.27 E-value=0.0063 Score=51.12 Aligned_cols=76 Identities=25% Similarity=0.327 Sum_probs=61.0
Q ss_pred ccCcHHHHhhh---CC--CCccHHHHHHHHHHHHHhcCCCCCCCCCcccCC-hhHHhhhccCccChhhHHHHHHccCCCC
Q 017847 113 CSLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMNRALSKHIWPL 186 (365)
Q Consensus 113 ~~LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~~~i~~~~m~k~L~~Hl~p~ 186 (365)
.+..+.|-.|| |. ...|+.+|+..|=+||-.+.|.|+.+..+|.|. +.|-.|||+..|++.+-..+...|...+
T Consensus 28 VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 107 (119)
T 1z1m_A 28 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNL 107 (119)
T ss_dssp CCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCSC
T ss_pred ccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 34445555555 54 567899999999999999999999999999997 7789999999999887777766666555
Q ss_pred CC
Q 017847 187 GA 188 (365)
Q Consensus 187 ~p 188 (365)
-.
T Consensus 108 v~ 109 (119)
T 1z1m_A 108 VV 109 (119)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 17
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=95.91 E-value=0.0084 Score=49.56 Aligned_cols=71 Identities=24% Similarity=0.372 Sum_probs=57.3
Q ss_pred cCcHHHHhhh---CC--CCccHHHHHHHHHHHHHhcCCCCCCCCCcccCC-hhHHhhhccCccChhhHHHHHHccCC
Q 017847 114 SLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 114 ~LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
+-.+.|..+| |. ...|+.+|+..|=+||-...|.|+.+..+|.|. +.|-.+||+..|++.+...+...|..
T Consensus 13 rPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~ 89 (107)
T 1ycq_A 13 QPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISR 89 (107)
T ss_dssp EECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHT
T ss_pred CccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHH
Confidence 3445666665 54 568999999999999999999999999999997 77899999999988877644444433
No 18
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=95.87 E-value=0.0088 Score=51.24 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=62.6
Q ss_pred cccCcHHHHhhh---CC--CCccHHHHHHHHHHHHHhcCCCCCCCCCcccCC-hhHHhhhccCccChhhHH---HHHHcc
Q 017847 112 LCSLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMN---RALSKH 182 (365)
Q Consensus 112 ~~~LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~~~i~~~~m~---k~L~~H 182 (365)
.++.-|.|-.|| |. ...|+.+|+..|=+||-...|.|+.+..+|.|. +.|-.|||+..|++.+.. +.|.+.
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 455567788887 65 578999999999999999999999999999996 778999999999887654 666666
Q ss_pred CCCCC
Q 017847 183 IWPLG 187 (365)
Q Consensus 183 l~p~~ 187 (365)
|.++.
T Consensus 103 Lv~~~ 107 (140)
T 2z5s_M 103 LVILN 107 (140)
T ss_dssp EECC-
T ss_pred ccccc
Confidence 66654
No 19
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=95.37 E-value=0.0072 Score=50.44 Aligned_cols=72 Identities=25% Similarity=0.342 Sum_probs=57.8
Q ss_pred cCcHHHHhhh---CC--CCccHHHHHHHHHHHHHhcCCCCCCCCCcccCC-hhHHhhhccCccChhhHHHHHHccCCC
Q 017847 114 SLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMNRALSKHIWP 185 (365)
Q Consensus 114 ~LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~~~i~~~~m~k~L~~Hl~p 185 (365)
+-.+.|..|| |. ...|+.+|+-.|=+||-...|.|+.+..+|.|. |.|-.|||+..|++.+-..+...+...
T Consensus 13 rPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (115)
T 2axi_A 13 RPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRN 90 (115)
T ss_dssp EECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHHTT
T ss_pred CccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 3445666666 54 568999999999999999999999999999997 778999999999888765555544443
No 20
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=70.35 E-value=3.6 Score=30.74 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=47.3
Q ss_pred CCCcccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 268 GVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 268 G~~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
|...|+|.++...|.++|...-=.+ ...|..|..|..-+|-||+.+.+|.-.|..+|-
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKK---EDEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCC---GGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCC---cccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 5567999999999999988753223 356889999977899999999999999988764
No 21
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=67.96 E-value=3.3 Score=30.97 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=47.7
Q ss_pred CCCCccHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCC
Q 017847 124 GAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 124 G~~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
|...|+|.++...|.++|...-=.++ ..|..|..|..-+|-|++.+.+|...|..+|-
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 56689999999999999887632333 36889999977899999999999999998763
No 22
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=50.67 E-value=10 Score=27.74 Aligned_cols=55 Identities=7% Similarity=0.163 Sum_probs=42.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 271 ELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 271 ~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
.|++.++...|.++|...-=.++ ..|..|..|..-+|-||+.+.+|.-.|..+|.
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 56 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEFD 56 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHhC
Confidence 57888888888888877532233 46889999977899999999999999999875
No 23
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.46 E-value=16 Score=28.32 Aligned_cols=60 Identities=10% Similarity=0.180 Sum_probs=46.3
Q ss_pred hhCCCcccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 266 FVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 266 flG~~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
|.++..|++.+|...|.++|...--.++ ..|..|..|..-+|.|++.+.+|.-.|..+|-
T Consensus 5 ~~~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~le~~fg 64 (99)
T 2dnw_A 5 SSGMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFG 64 (99)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 3456679999999999999887532233 45778888855579999999999999988774
No 24
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.76 E-value=13 Score=28.90 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=47.2
Q ss_pred hhCCCCccHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCC
Q 017847 122 VVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 122 ~lG~~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
+.++..|++.+|...|..+|...--.++. .|..|..|..-+|-|++.+.+|...|..+|-
T Consensus 5 ~~~m~~m~~~~i~~~l~~~l~~~l~~~~~---~i~~d~~l~~dlG~DSL~~vel~~~le~~fg 64 (99)
T 2dnw_A 5 SSGMPPLTLEGIQDRVLYVLKLYDKIDPE---KLSVNSHFMKDLGLDSLDQVEIIMAMEDEFG 64 (99)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHCTTSCTT---TCCTTCCCCCCCCCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHhCCCHh---hCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 34567799999999999999876323333 5788888755578999999999999998874
No 25
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=45.45 E-value=13 Score=27.15 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=42.6
Q ss_pred CccHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCC
Q 017847 127 ELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 127 ~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
.|+|.++...|.++|...-=.++ ..|..|..|..-+|-|++.+.+|...|..+|-
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 56 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEFD 56 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHhC
Confidence 47788888888888877643333 35889999977899999999999999999874
No 26
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=44.13 E-value=26 Score=25.47 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 272 LARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 272 ~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
|+|.++...|.++|...-=.+ ...|-.|..|..-+|.||+.+.+|...|..+|.
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fg 56 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIP---VEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFD 56 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCC---TTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhCCC---HHHCCCCcchhhccCCChHHHHHHHHHHHHHhC
Confidence 789999888888887753222 246788888876689999999999999999874
No 27
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=44.04 E-value=27 Score=28.38 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=29.6
Q ss_pred HHHHhcCCCCCcCHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhh
Q 017847 12 RDILRNSDLDTATAGSVRRLLEEDFKVDLSDRKAFVSEQIDLFLQT 57 (365)
Q Consensus 12 ~~IL~~sDl~tvT~k~VR~~LE~~fGvDLs~kK~~I~~~I~~~l~~ 57 (365)
.-+.+.-..+.||...|+++|+. ||++.++ +.|..++++.+.-
T Consensus 15 ~~~~~~~~~~~Vsae~L~eEfde-fGi~~~d--~VldKc~ELC~~y 57 (101)
T 2keb_A 15 EVLFQGPGSMSASAQQLAEELQI-FGLDCEE--ALIEKLVELCVQY 57 (101)
T ss_dssp ---------CCCCHHHHHHHHHH-HTCBCCH--HHHHHHHHHHHHH
T ss_pred hheeeCCchhhccHHHHHHHHHH-cCCCCCH--HHHHHHHHHHHHc
Confidence 34556677899999999999975 9999999 7888888877653
No 28
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=43.49 E-value=22 Score=25.94 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 272 LARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 272 ~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
|||.++...|.++|...-=.++ ..|-.|..|..-+|.||+.+.++.-.|..+|.
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~el~~~le~~fg 55 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLKADSLDTVELMMAIEVEYG 55 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHC
Confidence 6888888888888877532232 45888888877899999999999999988764
No 29
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=39.04 E-value=30 Score=25.04 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCC
Q 017847 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 128 ~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
|+|.++...|.++|...-=.++ ..|..|..|..-+|-|++.+.+|...|..+|-
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fg 56 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFD 56 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccCCChHHHHHHHHHHHHHhC
Confidence 7888898888888877542333 35888888866688999999999999999874
No 30
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=36.44 E-value=29 Score=25.18 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCC
Q 017847 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 128 ~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
|+|.++...|.++|...-=.++ ..|..|..|..-+|-|++.+.+|...|..+|-
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~el~~~le~~fg 55 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLKADSLDTVELMMAIEVEYG 55 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHC
Confidence 6788888888888877532333 35888999877789999999999999998763
No 31
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=36.21 E-value=17 Score=26.24 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=41.1
Q ss_pred ccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 272 LARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 272 ~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
|+|.++...|.++|...-=.+ ...|-.|..|..-+|.||+.+.+|...|..+|.
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fg 54 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVE---PEKVTLEARFIEDLGADSLDTVELIMGLEDEFG 54 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCC---GGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCC---HHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHC
Confidence 678888888887777642122 245778888877789999999999999988764
No 32
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=35.96 E-value=23 Score=27.83 Aligned_cols=40 Identities=38% Similarity=0.475 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhcCCC--------------CCcCHHHHHHHHHHHhCCCChhhH
Q 017847 5 SDLVTRLRDILRNSDL--------------DTATAGSVRRLLEEDFKVDLSDRK 44 (365)
Q Consensus 5 ~ei~~~I~~IL~~sDl--------------~tvT~k~VR~~LE~~fGvDLs~kK 44 (365)
..|...|-.||.-.+. +++..=.||..|++.||+.|+..-
T Consensus 9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~ 62 (91)
T 2cg5_B 9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVRE 62 (91)
T ss_dssp TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHH
Confidence 4678888888876543 344456789999999999998543
No 33
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=35.70 E-value=35 Score=27.15 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=0.0
Q ss_pred CC--ChhHHHHHHHHHHhcC----------------------CCCCcCHHHHHHHHHHHhCCCChh
Q 017847 1 MV--SDSDLVTRLRDILRNS----------------------DLDTATAGSVRRLLEEDFKVDLSD 42 (365)
Q Consensus 1 mv--sd~ei~~~I~~IL~~s----------------------Dl~tvT~k~VR~~LE~~fGvDLs~ 42 (365)
|+ +-++|...|.+||+.. .++++..=.+.-.||+.||+.+.+
T Consensus 12 m~~~~~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~ 77 (107)
T 3ce7_A 12 VVDTDINAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPD 77 (107)
T ss_dssp CCTTCHHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred CccCCHHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCH
No 34
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=34.86 E-value=25 Score=26.02 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 273 ARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 273 sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
++.++...|-+||...--.++ ..|..|..|..+.+-||+.+.+|.-.|..+|.
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~lDSl~~velv~~lE~~fg 53 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGLLDSMGTVQLLLELQSQFG 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccCcChHHHHHHHHHHHHHhC
Confidence 356778888888887652232 34788999988766999999999999999873
No 35
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=30.30 E-value=55 Score=25.06 Aligned_cols=40 Identities=15% Similarity=0.391 Sum_probs=34.8
Q ss_pred CChhHHHHHHHHHHhcCCCCC-cCHHHHHHHHHHHhCCCChh
Q 017847 2 VSDSDLVTRLRDILRNSDLDT-ATAGSVRRLLEEDFKVDLSD 42 (365)
Q Consensus 2 vsd~ei~~~I~~IL~~sDl~t-vT~k~VR~~LE~~fGvDLs~ 42 (365)
+|.+.|...|.+|+.+-|... +|-.+|...|.+. |++++-
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaR 56 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVAR 56 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccH
Confidence 577899999999999999755 7999999999887 999873
No 36
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=29.12 E-value=44 Score=26.39 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=26.7
Q ss_pred CChhHHHHHHHHHHhcC-----C--------------CCCcCHHHHHHHHHHHhCCCChhhHH
Q 017847 2 VSDSDLVTRLRDILRNS-----D--------------LDTATAGSVRRLLEEDFKVDLSDRKA 45 (365)
Q Consensus 2 vsd~ei~~~I~~IL~~s-----D--------------l~tvT~k~VR~~LE~~fGvDLs~kK~ 45 (365)
++..++...|.+||... + ++++..=.+...||+.||+.+....-
T Consensus 18 ~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~l 80 (105)
T 2jq4_A 18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLL 80 (105)
T ss_dssp -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHh
Confidence 34456666777777662 1 22334567889999999999986543
No 37
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=28.94 E-value=35 Score=23.14 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=16.7
Q ss_pred CCCCcCHHHHHHHHHHHhCCCC
Q 017847 19 DLDTATAGSVRRLLEEDFKVDL 40 (365)
Q Consensus 19 Dl~tvT~k~VR~~LE~~fGvDL 40 (365)
.|+-+-...+.+.||++|||+-
T Consensus 12 ~lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 12 KLTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp TSCHHHHHHHHHHHHHHTCCCS
T ss_pred hCcHHHHHHHHHHHHHHHCCCc
Confidence 3444446789999999999974
No 38
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=28.62 E-value=9.9 Score=28.61 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=44.2
Q ss_pred cccHHHHHHHHHHHHHhhC-CCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 271 ELARTEVVKKLWAYIREKN-LQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 271 ~~sR~~vvk~lW~YIK~n~-LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
.|+|.+|...|+++|...- +.+ -+...|..|..|..-+|-||+.+.+|.-.|..+|-
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~-~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fg 60 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLND-EQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFS 60 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCH-HHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-CCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHC
Confidence 5889999999999998753 211 01235778888877789999999999999998874
No 39
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=28.16 E-value=47 Score=26.33 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=43.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 271 ELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 271 ~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
.|++.++...|.++|...-=.++ ..|-.|..|..-+|.||+.+.+|.-.|..+|.
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fg 56 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYG 56 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccCCCHHHHHHHHHHHHHHHC
Confidence 37888998888888877532232 45788888877799999999999999998875
No 40
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=27.38 E-value=57 Score=23.69 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 273 ARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 273 sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
||.++...|.++|...=-.++. ..|-.|..|. =+|.||+.+.+|.-.|..+|-
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dlG~DSl~~vel~~~le~~fg 53 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KLGADSLDTVEIVMNLEEEFG 53 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CCTTCCSCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hcCCCHHHHHHHHHHHHHHHC
Confidence 4667777777777664222322 3578888887 479999999999999999874
No 41
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=26.79 E-value=24 Score=25.37 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCC
Q 017847 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 128 ~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
|+|.++...|.++|...-=.++ ..|..|..|..-+|-|++.+.+|...|..+|-
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fg 54 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEP---EKVTLEARFIEDLGADSLDTVELIMGLEDEFG 54 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCG---GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCcCcHHhhcCccHHHHHHHHHHHHHHHC
Confidence 5778887777777766421232 35788888867789999999999999998773
No 42
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=26.13 E-value=81 Score=24.11 Aligned_cols=42 Identities=31% Similarity=0.385 Sum_probs=31.3
Q ss_pred ChhHHHHHHHHHHhcC---C--------------CCCcCHHHHHHHHHHHhCCCChhhH
Q 017847 3 SDSDLVTRLRDILRNS---D--------------LDTATAGSVRRLLEEDFKVDLSDRK 44 (365)
Q Consensus 3 sd~ei~~~I~~IL~~s---D--------------l~tvT~k~VR~~LE~~fGvDLs~kK 44 (365)
+-++|...|.++|... + ++++..=.+...||+.||+.|....
T Consensus 5 t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~ 63 (95)
T 1nq4_A 5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDA 63 (95)
T ss_dssp CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTH
T ss_pred cHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHH
Confidence 5678888899988753 1 2334456889999999999998643
No 43
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=24.40 E-value=53 Score=26.03 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=44.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCC
Q 017847 127 ELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 127 ~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
.|++.++...|..+|...-=.++ ..|..|..|..-+|-|++.+.+|.-.|..+|-
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fg 56 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYG 56 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccCCCHHHHHHHHHHHHHHHC
Confidence 37888898888888887532333 35888888877789999999999999999874
No 44
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=24.03 E-value=31 Score=28.02 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=41.5
Q ss_pred CCCcccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 268 GVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 268 G~~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
+...| |.+|...|.++|...- . |..|..|..-+|-||+.+.+|.-.|...|-
T Consensus 23 ~~~~M-~~ei~~~v~~il~e~l-~-------I~~d~~l~~dLGlDSLd~veLi~~LEe~Fg 74 (113)
T 2cgq_A 23 FQGAM-EEAINATIQRILRTDR-G-------ITANQVLVDDLGFDSLKLFQLITELEDEFD 74 (113)
T ss_dssp ---CH-HHHHHHHHHHHHTCCS-C-------CCTTCBTTTTTCCCHHHHHHHHHHHHHHHT
T ss_pred hcccc-HHHHHHHHHHHHHHHh-C-------CCCCCchhhhcCCCHHHHHHHHHHHHHHhC
Confidence 44467 8999999999998643 1 788888888899999999999999988764
No 45
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=23.93 E-value=37 Score=29.63 Aligned_cols=53 Identities=23% Similarity=0.351 Sum_probs=36.4
Q ss_pred cccCCH-HHHhhhCCCcccHHHHHHHHHHHHHhhCCCCCCCCCccccc-hhhhhhhccC
Q 017847 256 LCSLSP-DLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVN 312 (365)
Q Consensus 256 ~~~LS~-~La~flG~~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD-~kLk~lFg~d 312 (365)
.+.++. +||.++|++..|=+.+ ..-.+..|+-.-..+++++.| +.|+.+.+.+
T Consensus 175 ~~~~t~~~iA~~lG~sr~tvsR~----l~~L~~~g~I~~~~~~i~i~d~~~L~~~a~~~ 229 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHHVTVSRV----LASLKRENILDKKKNKIIVYNLGELKHLSEQT 229 (250)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHHH----HHHHHHTTSEEECSSEEEESCHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHhCCcHHHHHHH----HHHHHHCCCeEeCCCEEEEecHHHHHHHHccC
Confidence 344554 7999999754433333 334567788877778888888 7888888753
No 46
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=23.59 E-value=1.5e+02 Score=21.19 Aligned_cols=40 Identities=8% Similarity=0.121 Sum_probs=32.5
Q ss_pred cCCCCCcCHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhh
Q 017847 17 NSDLDTATAGSVRRLLEEDFKVDLSDRKAFVSEQIDLFLQT 57 (365)
Q Consensus 17 ~sDl~tvT~k~VR~~LE~~fGvDLs~kK~~I~~~I~~~l~~ 57 (365)
..|+..+|+..++..|.. +|...+-.|+.+-+.|..|+..
T Consensus 7 ~~~l~klkV~eLK~~L~~-rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 7 GVELHKLKLAELKQECLA-RGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp CCCTTTSCHHHHHHHHHH-HTCCCCSCHHHHHHHHHHHHHH
T ss_pred ccCHHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHhc
Confidence 467888999999988765 7888888888777788888864
No 47
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=23.24 E-value=54 Score=24.10 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhCCCCCC-CCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 277 VVKKLWAYIREKNLQDPK-NRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 277 vvk~lW~YIK~n~LqDp~-nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
+...|+++|...=-.++. .-..|..|..| .-+|.||+.+.+|.-.|..+|.
T Consensus 6 ~~~~l~~il~~~l~~~~~~~~~~i~~~~~l-~dlG~DSL~~vel~~~le~~fg 57 (86)
T 1af8_A 6 TTDDLRRALVECAGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYG 57 (86)
T ss_dssp CHHHHHHHHHTTCCCCSCCCTTTCSSTTST-TTTTCCTTTHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhCCCcccccccCCCCCCh-hhcCCCHHHHHHHHHHHHHHHC
Confidence 344555555543222332 11257788888 5679999999999999999875
No 48
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=23.12 E-value=48 Score=24.43 Aligned_cols=53 Identities=13% Similarity=0.005 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCC
Q 017847 129 ARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 129 sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
+|.++...|-.||.+.--.++ ..|..|..|..+.+-|++.+.+|.-.|..+|-
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~lDSl~~velv~~lE~~fg 53 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGLLDSMGTVQLLLELQSQFG 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccCcChHHHHHHHHHHHHHhC
Confidence 456788888888887653333 34788888887766899999999999999883
No 49
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=23.08 E-value=60 Score=25.47 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=45.2
Q ss_pred CcccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 270 SELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 270 ~~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
..|-|.++...|+++|...-=.++ ..|..|..| .-+|.||+.+.+|.-.|...|-
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~---~~I~~d~~L-~dLGlDSL~~veL~~~LE~~fg 65 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDL---ETVDEENTF-KELGFDSIDVIDLVMFFEDEFA 65 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCC---CSCCTTSBT-TTTTCCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHCCCH---HHCCCCCCH-HHcCCchHHHHHHHHHHHHHHC
Confidence 378899999999999987543333 468899999 6789999999999999988764
No 50
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=21.49 E-value=14 Score=27.82 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=44.3
Q ss_pred CccHHHHHHHHHHHHHhcC-C--CCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCC
Q 017847 127 ELARTEVVKKLWVYIKENK-L--QDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 127 ~~sR~~vvk~lW~YIk~nn-L--qDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
.|+|.+|...|+++|...- + .++ ..|..|..|..-+|-|++.+.+|.-.|..+|-
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~~~~---~~i~~d~~l~~dlglDSl~~vel~~~lE~~fg 60 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLNDEQK---QILSGTTNLAKDFNLDSLDFVDLIMSLEERFS 60 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCHHHH---HSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCH---hhCCCCCchhhccCCcHHHHHHHHHHHHHHHC
Confidence 5789999999999998763 2 122 34778888877789999999999999998874
No 51
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=21.17 E-value=66 Score=25.23 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=45.7
Q ss_pred CCccHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCC
Q 017847 126 PELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 126 ~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
..|.|.++...|+++|...--.++. .|..|..| .-+|-|++.+.+|.-.|...|-
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~~---~I~~d~~L-~dLGlDSL~~veL~~~LE~~fg 65 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDLE---TVDEENTF-KELGFDSIDVIDLVMFFEDEFA 65 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCCC---SCCTTSBT-TTTTCCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHCCCHH---HCCCCCCH-HHcCCchHHHHHHHHHHHHHHC
Confidence 4688999999999999886434443 58899999 7789999999999999988763
No 52
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=20.88 E-value=47 Score=26.18 Aligned_cols=56 Identities=7% Similarity=-0.028 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHHHHhhCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017847 271 ELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (365)
Q Consensus 271 ~~sR~~vvk~lW~YIK~n~LqDp~nkr~I~cD~kLk~lFg~d~i~~~~i~klL~~Hl~ 328 (365)
..++.++...|.++|...--.+ -+...|-.|..|.. +|-||+.+.+|.-.|...|-
T Consensus 17 ~~~~~~i~~~i~~il~~~l~~~-v~~~~i~~d~~l~d-lGlDSL~~veLv~~lE~~fg 72 (105)
T 2jq4_A 17 LYFQGHMNATIREILAKFGQLP-TPVDTIADEADLYA-AGLSSFASVQLMLGIEEAFD 72 (105)
T ss_dssp ------CHHHHHHHHHHTSCCS-SCGGGCCTTSCGGG-GTCCHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhccC-CCcccCCCCCCHhh-cCCCHHHHHHHHHHHHHHHC
Confidence 5677888888999988753112 23467889999985 89999999999999988764
No 53
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=20.71 E-value=94 Score=22.44 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCcccCChhHHhhhccCccChhhHHHHHHccCC
Q 017847 129 ARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (365)
Q Consensus 129 sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~~~i~~~~m~k~L~~Hl~ 184 (365)
||.++...|..+|...=-.++. ..|..|..|. =+|-|++.+.+|...|..+|-
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dlG~DSl~~vel~~~le~~fg 53 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KLGADSLDTVEIVMNLEEEFG 53 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CCTTCCSCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hcCCCHHHHHHHHHHHHHHHC
Confidence 4667777777777765322332 2578888887 478999999999999999873
No 54
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=20.12 E-value=1.2e+02 Score=23.16 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=32.3
Q ss_pred CCChhHHHHHHHHHHhcC--------C------CCCcCHHHHHHHHHHHhCCCChhhH
Q 017847 1 MVSDSDLVTRLRDILRNS--------D------LDTATAGSVRRLLEEDFKVDLSDRK 44 (365)
Q Consensus 1 mvsd~ei~~~I~~IL~~s--------D------l~tvT~k~VR~~LE~~fGvDLs~kK 44 (365)
|-|-++|...+.++|..- . ++++..=.+..+|++.||+.++..-
T Consensus 1 M~tle~l~~I~~e~l~~d~~~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~~~~ 58 (87)
T 2kjs_A 1 MPTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGE 58 (87)
T ss_dssp CCSHHHHHHHHHHHHTCSSCCCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred CchHHHHHHHHHHHhCCCccccCCCCCcccCCCCChHHHHHHHHHHHHHhCceecHHH
Confidence 677888999999988631 1 2233445679999999999998543
No 55
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=20.02 E-value=1.5e+02 Score=24.42 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhCCCChhhHHHHHHHHH
Q 017847 3 SDSDLVTRLRDILRNSDLDTATAGSVRRLLEEDFKVDLSDRKAFVSEQID 52 (365)
Q Consensus 3 sd~ei~~~I~~IL~~sDl~tvT~k~VR~~LE~~fGvDLs~kK~~I~~~I~ 52 (365)
|++++..+-.......|++- -.||+.|...||.||-+-=+.|.+...
T Consensus 7 t~eeF~aRy~~~F~~~~iD~---~e~rrglN~l~~~DlVP~P~ii~aaLr 53 (109)
T 1v54_E 7 TDEEFDARWVTYFNKPDIDA---WELRKGMNTLVGYDLVPEPKIIDAALR 53 (109)
T ss_dssp CHHHHHHHHHHHHTCTTCCH---HHHHHHHHHHTTSSBCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCcCccH---HHHHHHHHHHhccccCCCcHHHHHHHH
Confidence 78888888888888888774 559999999999999977666655443
Done!