Query 017849
Match_columns 365
No_of_seqs 305 out of 2623
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1462 Translation initiation 100.0 7.2E-47 1.6E-51 342.0 19.7 296 1-327 8-307 (433)
2 KOG1322 GDP-mannose pyrophosph 100.0 3E-42 6.4E-47 306.5 23.9 232 2-331 9-245 (371)
3 COG1208 GCD1 Nucleoside-diphos 100.0 2.9E-39 6.2E-44 306.3 27.5 237 2-332 1-237 (358)
4 COG0448 GlgC ADP-glucose pyrop 100.0 1.2E-40 2.7E-45 306.8 15.7 238 2-331 5-262 (393)
5 KOG1461 Translation initiation 100.0 2.9E-37 6.2E-42 294.8 24.4 259 3-333 25-293 (673)
6 PRK00844 glgC glucose-1-phosph 100.0 8.6E-37 1.9E-41 295.9 24.9 246 2-332 5-278 (407)
7 PRK02862 glgC glucose-1-phosph 100.0 1E-36 2.2E-41 296.8 23.4 253 2-330 3-273 (429)
8 PLN02241 glucose-1-phosphate a 100.0 1.4E-36 3.1E-41 296.5 23.3 256 2-332 3-283 (436)
9 PRK05293 glgC glucose-1-phosph 100.0 3.8E-36 8.2E-41 289.5 24.7 238 2-332 3-260 (380)
10 PRK00725 glgC glucose-1-phosph 100.0 8.8E-36 1.9E-40 289.9 25.1 245 2-331 15-288 (425)
11 cd06428 M1P_guanylylT_A_like_N 100.0 2.9E-34 6.3E-39 261.9 23.8 231 5-329 1-257 (257)
12 cd06425 M1P_guanylylT_B_like_N 100.0 6.7E-34 1.5E-38 255.8 25.2 228 3-330 1-233 (233)
13 KOG1460 GDP-mannose pyrophosph 100.0 1.4E-35 3.1E-40 259.8 13.5 291 1-364 1-313 (407)
14 TIGR02091 glgC glucose-1-phosp 100.0 2.3E-34 5E-39 275.3 23.1 241 5-332 1-260 (361)
15 TIGR01105 galF UTP-glucose-1-p 100.0 1.1E-33 2.3E-38 261.5 26.7 236 2-331 3-279 (297)
16 PF00483 NTP_transferase: Nucl 100.0 3.5E-34 7.6E-39 259.9 22.4 237 4-331 1-247 (248)
17 TIGR02092 glgD glucose-1-phosp 100.0 1.8E-34 3.8E-39 276.8 19.7 239 2-333 2-256 (369)
18 cd04198 eIF-2B_gamma_N The N-t 100.0 3.5E-34 7.5E-39 254.2 20.0 211 3-220 1-214 (214)
19 TIGR01208 rmlA_long glucose-1- 100.0 3.4E-33 7.4E-38 266.4 28.0 233 4-332 1-237 (353)
20 COG1209 RfbA dTDP-glucose pyro 100.0 2.8E-33 6E-38 245.0 24.6 235 3-332 1-238 (286)
21 cd04197 eIF-2B_epsilon_N The N 100.0 3.5E-33 7.6E-38 248.4 20.9 203 3-220 1-217 (217)
22 PRK10122 GalU regulator GalF; 100.0 4.8E-32 1E-36 251.0 27.8 237 2-332 3-280 (297)
23 TIGR02623 G1P_cyt_trans glucos 100.0 3.8E-32 8.2E-37 247.2 25.1 225 4-331 1-246 (254)
24 cd02538 G1P_TT_short G1P_TT_sh 100.0 7.8E-32 1.7E-36 243.5 25.5 233 3-329 1-237 (240)
25 PRK15480 glucose-1-phosphate t 100.0 1E-31 2.2E-36 247.8 26.2 185 1-223 1-187 (292)
26 cd02541 UGPase_prokaryotic Pro 100.0 2.2E-31 4.8E-36 244.3 25.2 235 3-330 1-265 (267)
27 TIGR01099 galU UTP-glucose-1-p 100.0 5E-31 1.1E-35 241.0 24.4 230 3-325 1-260 (260)
28 TIGR01207 rmlA glucose-1-phosp 100.0 9.7E-31 2.1E-35 240.9 25.4 182 4-223 1-183 (286)
29 cd04189 G1P_TT_long G1P_TT_lon 100.0 2.5E-30 5.4E-35 233.0 26.9 232 3-331 1-235 (236)
30 cd02507 eIF-2B_gamma_N_like Th 100.0 5.4E-31 1.2E-35 234.0 19.9 206 3-220 1-216 (216)
31 cd02524 G1P_cytidylyltransfera 100.0 6.1E-30 1.3E-34 232.9 24.7 224 5-330 1-246 (253)
32 PRK13389 UTP--glucose-1-phosph 100.0 8.7E-30 1.9E-34 236.3 25.9 231 3-329 9-279 (302)
33 cd06422 NTP_transferase_like_1 100.0 4.2E-30 9.1E-35 229.2 22.6 216 4-325 1-221 (221)
34 cd06915 NTP_transferase_WcbM_l 100.0 1.5E-28 3.3E-33 219.1 24.2 222 5-325 1-222 (223)
35 cd04181 NTP_transferase NTP_tr 100.0 1.6E-28 3.4E-33 218.1 23.7 198 5-242 1-199 (217)
36 PRK14355 glmU bifunctional N-a 100.0 1.7E-28 3.6E-33 241.9 25.7 232 2-332 3-245 (459)
37 cd06426 NTP_transferase_like_2 100.0 1.9E-28 4.2E-33 218.3 23.8 220 5-326 1-220 (220)
38 PRK14358 glmU bifunctional N-a 100.0 7.9E-29 1.7E-33 244.8 23.3 232 1-332 6-246 (481)
39 COG1207 GlmU N-acetylglucosami 100.0 3E-27 6.6E-32 218.2 23.0 202 1-244 1-207 (460)
40 PRK14352 glmU bifunctional N-a 100.0 6.2E-27 1.4E-31 232.0 25.3 234 2-333 4-253 (482)
41 PRK09451 glmU bifunctional N-a 99.9 1.6E-26 3.5E-31 227.7 22.3 197 1-244 4-208 (456)
42 PRK14357 glmU bifunctional N-a 99.9 1.4E-25 3.1E-30 220.6 21.3 176 3-225 1-179 (448)
43 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 7.2E-25 1.6E-29 196.8 23.7 178 5-225 1-182 (231)
44 cd02508 ADP_Glucose_PP ADP-glu 99.9 9.2E-26 2E-30 198.2 17.2 129 5-136 1-144 (200)
45 TIGR01173 glmU UDP-N-acetylglu 99.9 6.9E-25 1.5E-29 216.0 25.4 227 3-331 1-237 (451)
46 PRK14354 glmU bifunctional N-a 99.9 8E-25 1.7E-29 215.9 25.9 181 1-225 1-185 (458)
47 cd02523 PC_cytidylyltransferas 99.9 3.9E-25 8.4E-30 198.3 21.0 176 5-225 1-178 (229)
48 PRK14356 glmU bifunctional N-a 99.9 1.7E-24 3.7E-29 213.5 25.6 180 3-226 6-190 (456)
49 PRK14359 glmU bifunctional N-a 99.9 7.1E-24 1.5E-28 207.6 26.7 230 1-332 1-236 (430)
50 COG1210 GalU UDP-glucose pyrop 99.9 6.5E-24 1.4E-28 186.3 22.7 237 2-331 4-271 (291)
51 PRK14360 glmU bifunctional N-a 99.9 3.7E-24 8E-29 210.8 21.8 182 3-226 2-187 (450)
52 PRK14353 glmU bifunctional N-a 99.9 1.3E-23 2.7E-28 206.7 25.2 183 1-226 4-190 (446)
53 cd02509 GDP-M1P_Guanylyltransf 99.9 4.3E-24 9.2E-29 196.2 18.2 192 3-226 1-208 (274)
54 cd02540 GT2_GlmU_N_bac N-termi 99.9 3E-22 6.6E-27 179.4 21.9 179 5-226 1-183 (229)
55 TIGR01479 GMP_PMI mannose-1-ph 99.9 4.2E-21 9.1E-26 188.5 19.8 192 3-226 1-210 (468)
56 PRK05450 3-deoxy-manno-octulos 99.9 1.1E-19 2.3E-24 164.7 22.0 186 1-225 1-194 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 9.6E-20 2.1E-24 164.4 20.7 180 3-225 2-191 (239)
58 PRK13368 3-deoxy-manno-octulos 99.8 1.9E-18 4.2E-23 155.8 20.6 181 1-223 1-187 (238)
59 COG0836 {ManC} Mannose-1-phosp 99.8 1.1E-17 2.4E-22 150.5 15.9 193 3-224 2-210 (333)
60 PRK15460 cpsB mannose-1-phosph 99.8 1.9E-17 4.2E-22 161.4 17.3 194 1-225 4-218 (478)
61 COG1213 Predicted sugar nucleo 99.7 1E-16 2.3E-21 138.6 15.1 113 2-123 3-118 (239)
62 PLN02917 CMP-KDO synthetase 99.7 4.9E-15 1.1E-19 137.0 21.8 200 1-242 46-254 (293)
63 PF12804 NTP_transf_3: MobA-li 99.7 9.2E-16 2E-20 129.6 11.5 118 5-137 1-122 (160)
64 COG4750 LicC CTP:phosphocholin 99.6 5.4E-16 1.2E-20 128.8 8.6 106 3-118 1-108 (231)
65 TIGR00454 conserved hypothetic 99.6 8.2E-15 1.8E-19 126.4 14.0 121 3-136 1-124 (183)
66 TIGR00466 kdsB 3-deoxy-D-manno 99.6 5.7E-14 1.2E-18 126.4 17.9 185 5-226 2-195 (238)
67 TIGR00453 ispD 2-C-methyl-D-er 99.5 4.9E-13 1.1E-17 118.8 18.6 116 4-130 1-120 (217)
68 cd04182 GT_2_like_f GT_2_like_ 99.5 1.6E-13 3.5E-18 118.5 14.3 120 3-135 1-125 (186)
69 COG2266 GTP:adenosylcobinamide 99.5 2.4E-13 5.3E-18 112.3 12.5 110 3-127 1-112 (177)
70 TIGR03310 matur_ygfJ molybdenu 99.5 2.5E-13 5.4E-18 117.8 13.4 120 5-136 2-125 (188)
71 cd02516 CDP-ME_synthetase CDP- 99.5 1.3E-12 2.7E-17 116.1 17.5 123 4-135 2-130 (218)
72 COG1212 KdsB CMP-2-keto-3-deox 99.5 9E-13 2E-17 112.9 14.9 187 1-228 2-195 (247)
73 cd02513 CMP-NeuAc_Synthase CMP 99.5 7.7E-13 1.7E-17 117.9 15.1 124 2-139 1-136 (223)
74 PRK13385 2-C-methyl-D-erythrit 99.5 6E-13 1.3E-17 119.3 13.4 128 1-135 1-132 (230)
75 PRK00155 ispD 2-C-methyl-D-ery 99.5 1E-12 2.3E-17 117.5 13.8 121 1-131 2-126 (227)
76 PLN02728 2-C-methyl-D-erythrit 99.4 1.4E-12 3.1E-17 117.8 12.8 123 2-134 24-151 (252)
77 cd02503 MobA MobA catalyzes th 99.4 1.1E-12 2.4E-17 113.1 11.5 112 3-133 1-115 (181)
78 TIGR03202 pucB xanthine dehydr 99.4 2.9E-12 6.4E-17 111.4 13.5 120 4-132 2-127 (190)
79 PRK00317 mobA molybdopterin-gu 99.4 2.3E-12 5.1E-17 112.3 11.8 114 1-131 2-119 (193)
80 PRK09382 ispDF bifunctional 2- 99.4 4.3E-12 9.4E-17 121.0 13.4 119 1-131 4-126 (378)
81 PRK02726 molybdopterin-guanine 99.4 5.8E-12 1.3E-16 110.5 12.6 112 1-128 6-120 (200)
82 TIGR02665 molyb_mobA molybdopt 99.4 5.1E-12 1.1E-16 109.4 12.0 118 3-135 1-122 (186)
83 PF01128 IspD: 2-C-methyl-D-er 99.3 2.5E-11 5.4E-16 107.2 13.3 119 4-135 2-127 (221)
84 COG1211 IspD 4-diphosphocytidy 99.3 2.8E-11 6E-16 106.5 12.6 126 1-135 3-134 (230)
85 TIGR03584 PseF pseudaminic aci 99.3 9.2E-11 2E-15 104.4 16.1 121 5-139 2-133 (222)
86 COG2068 Uncharacterized MobA-r 99.3 4.4E-11 9.6E-16 101.8 12.8 117 2-130 5-126 (199)
87 PRK14489 putative bifunctional 99.2 1.5E-10 3.2E-15 110.7 13.1 119 3-136 6-128 (366)
88 COG0746 MobA Molybdopterin-gua 99.2 1.7E-10 3.7E-15 99.8 10.8 111 1-130 3-116 (192)
89 cd02518 GT2_SpsF SpsF is a gly 99.1 5.9E-10 1.3E-14 100.1 12.4 118 5-135 2-122 (233)
90 PRK00560 molybdopterin-guanine 99.1 6.6E-10 1.4E-14 97.1 11.6 101 1-122 7-112 (196)
91 PRK14490 putative bifunctional 99.1 9.8E-10 2.1E-14 105.3 12.4 107 2-125 174-283 (369)
92 PRK14500 putative bifunctional 99.0 3.5E-09 7.5E-14 99.9 11.9 108 3-127 161-271 (346)
93 cd04180 UGPase_euk_like Eukary 98.9 1.5E-09 3.3E-14 98.9 5.8 63 4-72 2-75 (266)
94 COG1083 NeuA CMP-N-acetylneura 98.8 6.5E-08 1.4E-12 82.7 11.9 125 1-139 2-135 (228)
95 PF02348 CTP_transf_3: Cytidyl 98.8 6.3E-08 1.4E-12 85.8 11.7 113 4-132 1-120 (217)
96 cd04193 UDPGlcNAc_PPase UDPGlc 98.6 4.3E-06 9.3E-11 78.4 18.7 131 2-139 15-194 (323)
97 COG1861 SpsF Spore coat polysa 98.5 7E-07 1.5E-11 76.8 10.4 117 1-134 1-125 (241)
98 PTZ00339 UDP-N-acetylglucosami 98.4 4.5E-05 9.7E-10 74.9 19.9 130 2-137 106-287 (482)
99 cd00897 UGPase_euk Eukaryotic 97.9 0.0023 4.9E-08 59.3 20.2 191 2-225 3-233 (300)
100 PRK00576 molybdopterin-guanine 97.8 0.00014 2.9E-09 62.4 9.7 95 23-130 2-104 (178)
101 PLN02474 UTP--glucose-1-phosph 97.7 0.0054 1.2E-07 60.0 20.1 190 3-225 80-309 (469)
102 PF01704 UDPGP: UTP--glucose-1 97.5 0.0085 1.8E-07 58.2 18.3 191 3-226 57-289 (420)
103 PLN02435 probable UDP-N-acetyl 97.2 0.037 8.1E-07 54.6 18.0 191 3-224 117-363 (493)
104 TIGR03552 F420_cofC 2-phospho- 97.1 0.0027 5.9E-08 55.1 8.6 85 33-127 29-117 (195)
105 COG4284 UDP-glucose pyrophosph 97.0 0.038 8.2E-07 53.5 16.2 130 3-139 106-276 (472)
106 PLN02830 UDP-sugar pyrophospho 96.7 0.13 2.8E-06 52.4 18.1 132 3-140 129-312 (615)
107 cd00761 Glyco_tranf_GTA_type G 96.7 0.047 1E-06 43.8 12.6 97 28-126 2-102 (156)
108 cd06424 UGGPase UGGPase cataly 96.7 0.0055 1.2E-07 57.0 7.4 63 4-71 2-76 (315)
109 PF00535 Glycos_transf_2: Glyc 96.0 0.14 3E-06 42.0 11.5 108 28-137 3-114 (169)
110 TIGR03532 DapD_Ac 2,3,4,5-tetr 95.7 0.0052 1.1E-07 55.0 1.8 25 304-333 42-66 (231)
111 cd06439 CESA_like_1 CESA_like_ 93.0 2.7 5.7E-05 37.4 13.0 104 21-128 25-136 (251)
112 cd04179 DPM_DPG-synthase_like 93.0 1.4 3E-05 37.1 10.5 106 29-136 3-114 (185)
113 cd04186 GT_2_like_c Subfamily 92.9 3 6.4E-05 34.0 12.2 97 28-129 2-102 (166)
114 cd06442 DPM1_like DPM1_like re 91.7 2.6 5.7E-05 36.6 11.1 105 28-134 2-111 (224)
115 cd04195 GT2_AmsE_like GT2_AmsE 91.6 4.8 0.00011 34.2 12.5 99 28-128 3-107 (201)
116 cd04188 DPG_synthase DPG_synth 91.4 2.3 4.9E-05 36.9 10.3 106 29-136 3-117 (211)
117 cd06427 CESA_like_2 CESA_like_ 91.3 4.3 9.2E-05 36.1 12.1 106 28-136 6-119 (241)
118 cd06423 CESA_like CESA_like is 91.1 4 8.7E-05 33.1 11.1 99 28-128 2-105 (180)
119 cd02525 Succinoglycan_BP_ExoA 90.7 3.8 8.2E-05 36.1 11.2 103 28-133 5-113 (249)
120 cd04184 GT2_RfbC_Mx_like Myxoc 90.6 5.7 0.00012 33.8 11.9 103 29-132 7-115 (202)
121 cd02510 pp-GalNAc-T pp-GalNAc- 89.3 9.3 0.0002 35.2 12.9 101 29-131 4-113 (299)
122 PRK10073 putative glycosyl tra 88.9 5.3 0.00012 37.6 11.1 105 28-135 11-119 (328)
123 cd04187 DPM1_like_bac Bacteria 88.6 6.3 0.00014 33.0 10.5 102 29-133 3-111 (181)
124 cd06433 GT_2_WfgS_like WfgS an 88.5 7.6 0.00017 32.6 11.1 95 29-128 4-102 (202)
125 PRK14583 hmsR N-glycosyltransf 87.4 9.3 0.0002 37.6 12.2 100 27-128 79-182 (444)
126 PRK11204 N-glycosyltransferase 87.1 8.2 0.00018 37.6 11.6 99 28-128 59-161 (420)
127 TIGR03111 glyc2_xrt_Gpos1 puta 86.9 12 0.00025 36.9 12.6 99 28-128 54-158 (439)
128 PLN02726 dolichyl-phosphate be 86.8 8.9 0.00019 34.1 10.8 106 28-135 14-127 (243)
129 cd06437 CESA_CaSu_A2 Cellulose 85.7 17 0.00037 31.8 12.0 98 28-125 6-111 (232)
130 PRK10018 putative glycosyl tra 85.3 23 0.00051 32.5 12.9 99 28-128 10-112 (279)
131 cd04192 GT_2_like_e Subfamily 84.4 15 0.00033 31.7 11.0 102 28-131 2-112 (229)
132 PF00132 Hexapep: Bacterial tr 84.4 0.3 6.5E-06 29.5 -0.0 22 343-364 11-32 (36)
133 cd06434 GT2_HAS Hyaluronan syn 83.3 21 0.00044 31.2 11.4 96 28-127 5-103 (235)
134 KOG2978 Dolichol-phosphate man 83.2 26 0.00056 30.2 10.9 106 33-139 17-126 (238)
135 PTZ00260 dolichyl-phosphate be 82.7 21 0.00046 33.7 11.8 108 29-136 76-200 (333)
136 KOG2388 UDP-N-acetylglucosamin 82.6 1.4 3.1E-05 42.9 3.7 38 3-44 98-138 (477)
137 TIGR01556 rhamnosyltran L-rham 81.8 21 0.00044 32.5 11.1 96 35-135 8-107 (281)
138 cd06438 EpsO_like EpsO protein 81.6 30 0.00065 29.0 12.1 99 28-132 2-111 (183)
139 cd06435 CESA_NdvC_like NdvC_li 81.4 29 0.00064 30.3 11.7 97 28-127 3-110 (236)
140 cd04196 GT_2_like_d Subfamily 81.2 18 0.00039 30.8 10.1 96 28-125 3-103 (214)
141 cd04185 GT_2_like_b Subfamily 81.2 26 0.00057 29.7 11.1 96 29-127 3-105 (202)
142 cd02511 Beta4Glucosyltransfera 79.7 39 0.00084 29.6 11.9 93 28-129 5-99 (229)
143 TIGR03469 HonB hopene-associat 78.9 46 0.001 32.0 12.9 106 28-133 45-165 (384)
144 cd02526 GT2_RfbF_like RfbF is 78.6 34 0.00073 29.8 11.2 87 31-123 6-97 (237)
145 cd06420 GT2_Chondriotin_Pol_N 78.2 37 0.00081 28.0 11.4 96 29-126 3-104 (182)
146 PF01983 CofC: Guanylyl transf 77.1 2.1 4.5E-05 37.8 2.7 109 3-127 1-114 (217)
147 cd06421 CESA_CelA_like CESA_Ce 75.6 53 0.0011 28.4 13.0 98 28-128 6-111 (234)
148 cd02522 GT_2_like_a GT_2_like_ 73.8 42 0.0009 28.8 10.3 95 28-131 4-102 (221)
149 PRK13412 fkp bifunctional fuco 73.2 8.9 0.00019 41.4 6.6 93 105-226 154-247 (974)
150 PF07302 AroM: AroM protein; 72.2 64 0.0014 28.6 10.7 98 5-115 91-190 (221)
151 PF14602 Hexapep_2: Hexapeptid 71.6 1.6 3.4E-05 26.2 0.4 13 352-364 18-30 (34)
152 PRK10714 undecaprenyl phosphat 69.0 63 0.0014 30.4 10.8 55 79-134 67-122 (325)
153 COG1215 Glycosyltransferases, 68.8 61 0.0013 31.4 11.2 103 27-131 58-167 (439)
154 cd06913 beta3GnTL1_like Beta 1 68.5 77 0.0017 27.3 11.3 100 29-130 3-113 (219)
155 PRK11498 bcsA cellulose syntha 68.2 78 0.0017 34.1 12.2 102 28-137 265-374 (852)
156 COG1044 LpxD UDP-3-O-[3-hydrox 66.6 3.6 7.8E-05 38.5 1.8 11 209-219 55-65 (338)
157 TIGR03472 HpnI hopanoid biosyn 66.5 67 0.0015 30.7 10.7 100 28-128 46-153 (373)
158 cd05824 LbH_M1P_guanylylT_C Ma 65.1 5.1 0.00011 28.9 2.1 15 347-361 13-27 (80)
159 PRK13915 putative glucosyl-3-p 62.6 98 0.0021 28.8 10.7 106 28-136 36-152 (306)
160 KOG1460 GDP-mannose pyrophosph 60.7 5.4 0.00012 36.7 1.8 20 345-364 300-319 (407)
161 PRK11132 cysE serine acetyltra 60.4 6.6 0.00014 36.0 2.4 19 346-364 162-180 (273)
162 COG1216 Predicted glycosyltran 60.4 66 0.0014 29.7 9.2 105 28-135 9-118 (305)
163 PRK10063 putative glycosyl tra 60.2 1.3E+02 0.0028 26.9 13.0 90 34-127 13-107 (248)
164 cd02520 Glucosylceramide_synth 60.1 1.1E+02 0.0023 25.9 11.9 97 28-126 6-111 (196)
165 PF13641 Glyco_tranf_2_3: Glyc 59.1 53 0.0011 28.4 8.0 101 28-130 6-115 (228)
166 PF10111 Glyco_tranf_2_2: Glyc 58.2 1.5E+02 0.0032 27.0 11.7 37 88-124 74-111 (281)
167 TIGR03030 CelA cellulose synth 56.7 1.8E+02 0.004 30.6 12.6 103 28-136 136-262 (713)
168 KOG1322 GDP-mannose pyrophosph 56.5 6.3 0.00014 36.8 1.5 21 344-364 275-295 (371)
169 cd06436 GlcNAc-1-P_transferase 55.7 1.3E+02 0.0027 25.4 10.8 96 28-126 2-114 (191)
170 COG1581 Ssh10b Archaeal DNA-bi 54.0 68 0.0015 23.8 6.1 50 26-75 4-57 (91)
171 PF04028 DUF374: Domain of unk 53.1 81 0.0017 22.6 6.5 58 50-112 10-67 (74)
172 cd00208 LbetaH Left-handed par 51.6 9.2 0.0002 26.8 1.5 25 340-364 51-75 (78)
173 COG1920 Predicted nucleotidylt 50.4 75 0.0016 27.5 6.8 112 3-135 1-118 (210)
174 PRK00923 sirohydrochlorin coba 50.2 28 0.00062 27.5 4.3 23 33-55 44-66 (126)
175 cd03357 LbH_MAT_GAT Maltose O- 49.5 9.7 0.00021 32.0 1.5 25 341-365 126-150 (169)
176 TIGR03570 NeuD_NnaD sugar O-ac 48.0 32 0.0007 29.1 4.6 19 311-329 61-79 (201)
177 TIGR01853 lipid_A_lpxD UDP-3-O 47.5 34 0.00074 32.2 5.0 19 312-330 66-84 (324)
178 TIGR00285 DNA-binding protein 46.9 29 0.00063 25.8 3.4 31 29-59 4-36 (87)
179 PF05060 MGAT2: N-acetylglucos 46.5 50 0.0011 31.5 5.8 56 15-71 24-81 (356)
180 PF13704 Glyco_tranf_2_4: Glyc 45.6 1.2E+02 0.0026 22.3 8.3 72 35-112 5-81 (97)
181 PRK10502 putative acyl transfe 44.3 14 0.0003 31.5 1.7 26 339-364 130-155 (182)
182 PRK09527 lacA galactoside O-ac 43.8 14 0.00031 32.2 1.7 27 339-365 137-163 (203)
183 PRK10092 maltose O-acetyltrans 42.8 16 0.00034 31.4 1.8 22 343-364 139-160 (183)
184 cd05825 LbH_wcaF_like wcaF-lik 41.3 18 0.00039 27.7 1.8 25 340-364 63-87 (107)
185 TIGR01172 cysE serine O-acetyl 41.0 17 0.00037 30.3 1.7 9 354-362 116-124 (162)
186 PRK00892 lpxD UDP-3-O-[3-hydro 40.2 59 0.0013 30.8 5.4 18 312-329 73-91 (343)
187 cd03349 LbH_XAT Xenobiotic acy 40.2 18 0.00039 29.6 1.7 23 342-364 82-104 (145)
188 COG0110 WbbJ Acetyltransferase 40.1 15 0.00033 31.2 1.3 26 340-365 131-156 (190)
189 PRK10092 maltose O-acetyltrans 39.8 18 0.00039 31.0 1.7 25 340-364 130-154 (183)
190 PF09837 DUF2064: Uncharacteri 39.8 1.4E+02 0.003 23.6 6.7 81 40-126 1-85 (122)
191 cd04191 Glucan_BSP_ModH Glucan 38.9 2.9E+02 0.0063 24.8 12.9 108 28-136 4-129 (254)
192 cd03350 LbH_THP_succinylT 2,3, 37.8 21 0.00045 28.8 1.7 25 340-364 82-106 (139)
193 cd04646 LbH_Dynactin_6 Dynacti 36.7 19 0.00041 30.1 1.3 19 345-363 95-113 (164)
194 PRK09677 putative lipopolysacc 36.1 23 0.00049 30.6 1.7 24 341-364 138-161 (192)
195 PRK11132 cysE serine acetyltra 35.3 24 0.00051 32.4 1.8 25 340-364 200-224 (273)
196 COG2121 Uncharacterized protei 35.2 1.5E+02 0.0033 25.9 6.5 60 48-112 66-125 (214)
197 cd04646 LbH_Dynactin_6 Dynacti 34.3 25 0.00054 29.4 1.7 15 346-360 102-116 (164)
198 KOG2638 UDP-glucose pyrophosph 34.0 2.3E+02 0.0051 27.6 8.1 126 5-135 106-270 (498)
199 COG2179 Predicted hydrolase of 33.7 2.8E+02 0.006 23.5 7.6 87 28-127 39-129 (175)
200 COG0663 PaaY Carbonic anhydras 33.1 26 0.00056 29.8 1.5 28 338-365 94-121 (176)
201 cd03350 LbH_THP_succinylT 2,3, 33.1 30 0.00065 27.9 1.9 9 344-352 54-62 (139)
202 cd05825 LbH_wcaF_like wcaF-lik 32.5 31 0.00068 26.4 1.8 25 340-364 57-81 (107)
203 cd03357 LbH_MAT_GAT Maltose O- 32.2 26 0.00057 29.4 1.5 25 340-364 119-143 (169)
204 TIGR03308 phn_thr-fam phosphon 32.1 31 0.00066 30.1 1.9 23 342-364 117-139 (204)
205 cd03349 LbH_XAT Xenobiotic acy 31.7 29 0.00062 28.5 1.6 25 340-364 74-98 (145)
206 TIGR00965 dapD 2,3,4,5-tetrahy 31.4 29 0.00062 31.7 1.6 15 91-105 26-40 (269)
207 TIGR00965 dapD 2,3,4,5-tetrahy 31.0 34 0.00073 31.3 2.0 10 354-363 176-185 (269)
208 COG0381 WecB UDP-N-acetylgluco 30.9 3.4E+02 0.0073 26.3 8.7 100 27-128 6-115 (383)
209 PF13562 NTP_transf_4: Sugar n 30.6 2E+02 0.0042 23.9 6.4 48 6-57 3-50 (156)
210 PRK10502 putative acyl transfe 30.1 32 0.00069 29.3 1.7 25 341-365 126-150 (182)
211 PRK10481 hypothetical protein; 29.2 4.1E+02 0.0089 23.6 11.6 85 35-125 117-203 (224)
212 PRK11830 dapD 2,3,4,5-tetrahyd 28.9 36 0.00079 31.2 1.9 11 347-357 178-188 (272)
213 PRK00892 lpxD UDP-3-O-[3-hydro 28.6 34 0.00074 32.4 1.8 15 206-220 51-65 (343)
214 PRK10191 putative acyl transfe 28.5 33 0.00071 28.2 1.4 19 346-364 105-123 (146)
215 TIGR03308 phn_thr-fam phosphon 28.5 37 0.00081 29.6 1.8 25 340-364 109-133 (204)
216 PF13712 Glyco_tranf_2_5: Glyc 28.3 2E+02 0.0044 25.2 6.5 50 79-128 31-82 (217)
217 PLN02472 uncharacterized prote 27.5 38 0.00082 30.6 1.7 25 340-364 150-174 (246)
218 TIGR01172 cysE serine O-acetyl 27.2 37 0.00079 28.3 1.5 22 343-364 123-144 (162)
219 PRK05782 bifunctional sirohydr 27.2 1.1E+02 0.0023 29.1 4.7 53 2-56 5-71 (335)
220 PRK10191 putative acyl transfe 27.1 38 0.00082 27.9 1.5 24 341-364 94-117 (146)
221 cd05635 LbH_unknown Uncharacte 26.5 45 0.00098 25.3 1.8 27 338-364 28-54 (101)
222 TIGR02990 ectoine_eutA ectoine 25.6 4.7E+02 0.01 23.4 8.4 85 36-124 107-202 (239)
223 KOG1461 Translation initiation 25.6 36 0.00078 34.7 1.3 20 267-286 283-302 (673)
224 PRK09527 lacA galactoside O-ac 25.5 44 0.00096 29.1 1.8 24 341-364 133-156 (203)
225 PRK09677 putative lipopolysacc 25.4 42 0.00091 28.9 1.6 25 340-364 131-155 (192)
226 cd04745 LbH_paaY_like paaY-lik 25.1 43 0.00093 27.5 1.5 19 345-363 90-108 (155)
227 PRK11830 dapD 2,3,4,5-tetrahyd 24.9 43 0.00094 30.7 1.6 14 92-105 29-42 (272)
228 PLN02739 serine acetyltransfer 24.6 42 0.00091 31.9 1.5 24 341-364 265-288 (355)
229 TIGR03570 NeuD_NnaD sugar O-ac 24.6 53 0.0011 27.8 2.1 20 344-363 128-147 (201)
230 COG1208 GCD1 Nucleoside-diphos 24.4 50 0.0011 31.5 2.1 30 335-364 257-286 (358)
231 cd03413 CbiK_C Anaerobic cobal 24.3 1.1E+02 0.0023 23.5 3.5 24 32-55 39-62 (103)
232 COG0110 WbbJ Acetyltransferase 24.3 39 0.00084 28.6 1.2 27 339-365 124-150 (190)
233 cd04647 LbH_MAT_like Maltose O 24.0 49 0.0011 24.9 1.6 21 344-364 69-89 (109)
234 cd05636 LbH_G1P_TT_C_like Puta 23.7 47 0.001 27.5 1.6 25 340-364 136-160 (163)
235 PLN02739 serine acetyltransfer 23.5 53 0.0011 31.2 1.9 16 347-362 227-242 (355)
236 cd03351 LbH_UDP-GlcNAc_AT UDP- 23.2 43 0.00093 30.2 1.3 16 340-355 48-63 (254)
237 COG0463 WcaA Glycosyltransfera 22.4 4.1E+02 0.0089 21.2 8.1 91 29-121 9-102 (291)
238 PF05679 CHGN: Chondroitin N-a 22.4 7.1E+02 0.015 25.0 9.8 90 28-119 252-358 (499)
239 PLN02694 serine O-acetyltransf 21.8 50 0.0011 30.6 1.4 20 345-364 224-243 (294)
240 PLN02357 serine acetyltransfer 21.5 51 0.0011 31.4 1.4 16 347-362 248-263 (360)
241 TIGR03535 DapD_actino 2,3,4,5- 21.4 45 0.00099 31.0 1.0 9 299-307 161-169 (319)
242 PRK14355 glmU bifunctional N-a 20.9 52 0.0011 32.5 1.5 9 218-226 203-211 (459)
243 KOG4042 Dynactin subunit p27/W 20.8 50 0.0011 27.2 1.0 20 345-364 107-126 (190)
244 cd03359 LbH_Dynactin_5 Dynacti 20.6 65 0.0014 26.7 1.8 14 349-362 117-130 (161)
245 PF02641 DUF190: Uncharacteriz 20.3 1.6E+02 0.0034 22.4 3.7 28 30-57 15-42 (101)
246 TIGR01173 glmU UDP-N-acetylglu 20.2 52 0.0011 32.2 1.3 9 218-226 196-204 (451)
247 PRK14353 glmU bifunctional N-a 20.0 69 0.0015 31.4 2.1 29 300-329 214-242 (446)
No 1
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-47 Score=341.97 Aligned_cols=296 Identities=32% Similarity=0.518 Sum_probs=228.0
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|+|||||+|||.||||-.+ +...|||||||+|+|||+|+|++|.++|+++|+|++.... .+.++.++.+.+.-++...
T Consensus 8 ~efqavV~a~~ggt~~p~~-~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e-~~~i~~al~~~~~l~~~~~ 85 (433)
T KOG1462|consen 8 SEFQAVVLAGGGGTRMPEV-TSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDE-KLDIESALGSNIDLKKRPD 85 (433)
T ss_pred HHhhhheeecCCceechhh-hhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHH-HHHHHHHHhcCCccccccc
Confidence 4789999999999999777 8999999999999999999999999999999999998533 2456666655332222211
Q ss_pred EEEc----CCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849 81 VATV----PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (365)
Q Consensus 81 i~~~----~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (365)
++.. .+..||+++|+.....+..+|||+++||+|++.++..+++.++..++...|++..... +...++.+.+
T Consensus 86 ~v~ip~~~~~d~gtadsLr~Iy~kikS~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s----~~~~pgqk~k 161 (433)
T KOG1462|consen 86 YVEIPTDDNSDFGTADSLRYIYSKIKSEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALS----EVPIPGQKGK 161 (433)
T ss_pred EEEeecccccccCCHHHHhhhhhhhccCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccc----cccccCcccc
Confidence 2222 2357999999999998987899999999999999999999999888877777663221 1112333322
Q ss_pred CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccc
Q 017849 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD 236 (365)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d 236 (365)
+.+...++.++++++++.+.....+.++++.+++++||+||++++.++|.|+|+|+|++|+++ ++.+++...||+.+
T Consensus 162 --~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d-~l~~~~sisSfk~~ 238 (433)
T KOG1462|consen 162 --KKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVID-LLSEKESISSFKAD 238 (433)
T ss_pred --cccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHH-HHhcCCcceeeccc
Confidence 235678899999998888877777889999999999999999999999999999999999996 55777889999999
Q ss_pred hhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEe
Q 017849 237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL 316 (365)
Q Consensus 237 ~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri 316 (365)
|+|+|+++|+++.....+... .++ +.|.+ ..+.+...+ .++.+||+|+.+.++-|.|+
T Consensus 239 f~P~lvkkQ~q~~~~~~~~~~--------------~~l---~t~~~---~~~d~~~~~--~d~ik~y~~~~p~e~~~~ra 296 (433)
T KOG1462|consen 239 FLPYLVKKQFQKNPPLKKNET--------------SIL---PTPNL---NNPDGIHSP--DDRIKCYAYILPTESLFVRA 296 (433)
T ss_pred ccchhhhhhhhcCCCcccccc--------------ccc---CCccc---cCcccccCc--ccceeeeEEEccCccceEEe
Confidence 999999999976544222111 011 11111 111111111 13689999999988899999
Q ss_pred CCHHHHHHHhH
Q 017849 317 NSIQAFMDINR 327 (365)
Q Consensus 317 ~~~~~Y~~~n~ 327 (365)
||+.+|+++||
T Consensus 297 NtL~~y~eiN~ 307 (433)
T KOG1462|consen 297 NTLLSYMEINR 307 (433)
T ss_pred cchHHHHhhhH
Confidence 99999999996
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3e-42 Score=306.51 Aligned_cols=232 Identities=23% Similarity=0.433 Sum_probs=190.0
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i 81 (365)
.|.||||.||.||||+|| |..+|||++||+|+|||+|++++|.++|+++|++++++.. +++..|+...+..++++++
T Consensus 9 ~vkaiILvGG~GTRLrPL-T~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s--~sl~~~~~k~y~~~lgVei 85 (371)
T KOG1322|consen 9 SVKAIILVGGYGTRLRPL-TLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNS--ESLNRHLSKAYGKELGVEI 85 (371)
T ss_pred ceeEEEEecCCCceeece-eccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCc--HHHHHHHHHHhhhccceEE
Confidence 478999999999999999 9999999999999999999999999999999999999874 4677776655555677777
Q ss_pred EE--cCCCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849 82 AT--VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (365)
Q Consensus 82 ~~--~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (365)
+. +.+++|+++.+..+++++- +.+|+|++||+++..++.++++.|+++++++|+++..+.
T Consensus 86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd--------------- 150 (371)
T KOG1322|consen 86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD--------------- 150 (371)
T ss_pred EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc---------------
Confidence 65 4456666666666665543 337999999999999999999999999999999988764
Q ss_pred CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccc
Q 017849 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD 236 (365)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d 236 (365)
+++.||++.+|+++.++..|. ||+. ...++.+|+|||+|++++|+.++ .. -.|+..+
T Consensus 151 --epSkyGvv~~d~~~grV~~F~-----EKPk-------------d~vsnkinaGiYi~~~~vL~ri~-~~--ptSiekE 207 (371)
T KOG1322|consen 151 --EPSKYGVVVIDEDTGRVIRFV-----EKPK-------------DLVSNKINAGIYILNPEVLDRIL-LR--PTSIEKE 207 (371)
T ss_pred --CccccceEEEecCCCceeEeh-----hCch-------------hhhhccccceEEEECHHHHhHhh-hc--ccchhhh
Confidence 378899999999554567776 4432 23567889999999999999886 32 3679999
Q ss_pred hhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEe
Q 017849 237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL 316 (365)
Q Consensus 237 ~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri 316 (365)
.+|.+++. .++|||.+ +|||..|
T Consensus 208 ifP~~a~~-------------------------------------------------------~~l~a~~l--~gfWmDI 230 (371)
T KOG1322|consen 208 IFPAMAEE-------------------------------------------------------HQLYAFDL--PGFWMDI 230 (371)
T ss_pred hhhhhhhc-------------------------------------------------------CceEEEec--Cchhhhc
Confidence 99976644 34689999 8999999
Q ss_pred CCHHHHHHHhHHHhh
Q 017849 317 NSIQAFMDINRDVIG 331 (365)
Q Consensus 317 ~~~~~Y~~~n~~~l~ 331 (365)
.++++|+++=.-.++
T Consensus 231 Gqpkdf~~g~~~Yl~ 245 (371)
T KOG1322|consen 231 GQPKDFLTGFSFYLR 245 (371)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999444444
No 3
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-39 Score=306.34 Aligned_cols=237 Identities=23% Similarity=0.451 Sum_probs=195.5
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i 81 (365)
.|+|||||||+||||+|| |..+||||+||+|||||+|+|++|..+|+++|+|.+++. .+.+.+++.+.+.....+.+
T Consensus 1 ~mkavILagG~GtRLrPl-T~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~--~~~i~~~~~d~~~~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGGYGTRLRPL-TDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYL--GEQIEEYFGDGEGLGVRITY 77 (358)
T ss_pred CceEEEEeCCcccccccc-ccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccc--hHHHHHHHhcccccCCceEE
Confidence 378999999999999999 999999999999999999999999999999999999876 46888888864222356778
Q ss_pred EEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCC
Q 017849 82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG 161 (365)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (365)
+.+..+.||+++|+.+.+++..++|++++||.+++.|+..+++.|+++++.+|++..... .+.
T Consensus 78 ~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~-----------------~~~ 140 (358)
T COG1208 78 VVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL-----------------DPS 140 (358)
T ss_pred EecCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC-----------------CCC
Confidence 877889999999999999997789999999999999999999999998888888776543 245
Q ss_pred cceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccchhhHH
Q 017849 162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYL 241 (365)
Q Consensus 162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d~lp~l 241 (365)
.||++..++++.++..+.+++..+ ...++++++|+|+|++++|+.+ .. ....++..+++|.|
T Consensus 141 ~~Gvv~~~~~~~~v~~f~ekp~~~----------------~~~~~~in~Giyi~~~~v~~~i-~~-~~~~~~~~~~~~~l 202 (358)
T COG1208 141 EFGVVETDDGDGRVVEFREKPGPE----------------EPPSNLINAGIYIFDPEVFDYI-EK-GERFDFEEELLPAL 202 (358)
T ss_pred cCceEEecCCCceEEEEEecCCCC----------------CCCCceEEeEEEEECHHHhhhc-cc-CCcccchhhHHHHH
Confidence 789888885544567776433111 2356899999999999999733 43 23467777899998
Q ss_pred HHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHH
Q 017849 242 VRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQA 321 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~ 321 (365)
++.+. .+++|.+ +|||..|.++.+
T Consensus 203 ~~~~~------------------------------------------------------~v~~~~~--~g~W~dig~p~d 226 (358)
T COG1208 203 AAKGE------------------------------------------------------DVYGYVF--EGYWLDIGTPED 226 (358)
T ss_pred HhCCC------------------------------------------------------cEEEEEe--CCeEEeCCCHHH
Confidence 86631 3588888 779999999999
Q ss_pred HHHHhHHHhhh
Q 017849 322 FMDINRDVIGE 332 (365)
Q Consensus 322 Y~~~n~~~l~~ 332 (365)
|.++|+.+++.
T Consensus 227 ~~~a~~~~~~~ 237 (358)
T COG1208 227 LLEANELLLRG 237 (358)
T ss_pred HHHHHHHHHhc
Confidence 99999999963
No 4
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=306.80 Aligned_cols=238 Identities=22% Similarity=0.360 Sum_probs=196.4
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHh---hhcCC-
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA---AYVDR- 76 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~---~~~~~- 76 (365)
++.|+|||||.|+||.|| |..|+||.+||||| +||||+|++|.++|+.+|.|++.++.+ .+.+|++. |.+++
T Consensus 5 ~~laiILaGg~G~rL~~L-T~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~--SL~~Hi~~G~~w~l~~~ 81 (393)
T COG0448 5 NVLAIILAGGRGSRLSPL-TKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSH--SLNDHIGRGWPWDLDRK 81 (393)
T ss_pred ceEEEEEcCCCCCccchh-hhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchh--HHHHHhhCCCccccccc
Confidence 467999999999999999 99999999999999 999999999999999999999998854 89999985 32332
Q ss_pred -cceEEEEc----C---CCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 017849 77 -LHVEVATV----P---EDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL 145 (365)
Q Consensus 77 -~~v~i~~~----~---~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~ 145 (365)
-++.++.. . ...||++|+++.+..+. .+++|+++||+|+++|++++++.|++++|++|+++.+++..
T Consensus 82 ~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~-- 159 (393)
T COG0448 82 NGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPRE-- 159 (393)
T ss_pred cCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChH--
Confidence 24555432 1 24899999999877665 46799999999999999999999999999999999988642
Q ss_pred ccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849 146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (365)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~ 225 (365)
+.++||++.+|+++++ ..|.+++..+. ....++++|+|||++++|..++.
T Consensus 160 -------------eas~fGim~~D~~~~i-~~F~eKp~~~~----------------~~~~laSMgiYIf~~~~L~~~L~ 209 (393)
T COG0448 160 -------------EASRFGVMNVDENGRI-IEFVEKPADGP----------------PSNSLASMGIYIFNTDLLKELLE 209 (393)
T ss_pred -------------hhhhcCceEECCCCCE-EeeeeccCcCC----------------cccceeeeeeEEEcHHHHHHHHH
Confidence 3678999999999986 56664332210 12238999999999999999987
Q ss_pred cC----ccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeE
Q 017849 226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 301 (365)
Q Consensus 226 ~~----~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (365)
+. ....++.+|+||.+++.. .
T Consensus 210 ~~~~~~~~~~DfgkdiIp~~~~~~-------------------------------------------------------~ 234 (393)
T COG0448 210 EDAKDPNSSHDFGKDIIPKLLERG-------------------------------------------------------K 234 (393)
T ss_pred HHhcccCccccchHHHHHHHHhcC-------------------------------------------------------C
Confidence 53 245677888888866442 2
Q ss_pred EEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 017849 302 CCVYIASNSKYCVRLNSIQAFMDINRDVIG 331 (365)
Q Consensus 302 ~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~ 331 (365)
++||.+ +|||..|.|+.+||++|||+|+
T Consensus 235 v~AY~f--~gYw~dVgTi~syy~aNmdLl~ 262 (393)
T COG0448 235 VYAYEF--SGYWRDVGTIDSYYEANMDLLS 262 (393)
T ss_pred EEEEec--cchhhhcccHHHHHHhhHHhcC
Confidence 699999 8899999999999999999997
No 5
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-37 Score=294.82 Aligned_cols=259 Identities=25% Similarity=0.423 Sum_probs=214.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHh--hhcCCcc--
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA--AYVDRLH-- 78 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~--~~~~~~~-- 78 (365)
+|||++|..+.+||+|+ |..+|++|+|++|.|||+|+|++|..+|+.+|+|+|+.+ +.++.+|++. |+. .+.
T Consensus 25 LqAIllaDsf~trF~Pl-t~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~--~~qi~e~i~~sew~~-~~~~~ 100 (673)
T KOG1461|consen 25 LQAILLADSFETRFRPL-TLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAH--AAQIIEYIEKSEWYL-PMSFI 100 (673)
T ss_pred eEEEEEeccchhccccc-ccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEeccc--HHHHHHHHhhccccc-cccce
Confidence 68999999999999999 999999999999999999999999999999999999865 3589999975 433 223
Q ss_pred eEEEEcCCCCChHHHHHHH-HHHcCCCcEEEEeCCcccCCChHHHHHHHHhc-----CCeEEEEEeeeccCCCccCCCCC
Q 017849 79 VEVATVPEDVGTAGALRAI-AHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGSSG 152 (365)
Q Consensus 79 v~i~~~~~~~gt~~al~~~-~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~-----~a~~t~l~~~~~~~~~~~~~~~~ 152 (365)
+..+..++....||+||.. .+.+..++|++++||++++.+|.++++.|+++ ++.|||++.+...
T Consensus 101 v~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st---------- 170 (673)
T KOG1461|consen 101 VVTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESST---------- 170 (673)
T ss_pred EEEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEecccc----------
Confidence 3333334568899999998 45666799999999999999999999999653 7889999876421
Q ss_pred CccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccc
Q 017849 153 AKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQS 232 (365)
Q Consensus 153 ~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s 232 (365)
+....-.++++|..+.+++++......+....++.+++..++.+.+++++.+|+|-|||+.++..| .++|||+
T Consensus 171 -----~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF-~dNFDyq- 243 (673)
T KOG1461|consen 171 -----RETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLF-TDNFDYQ- 243 (673)
T ss_pred -----ccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHh-hhcccce-
Confidence 112344678899988888888642222345788999999999999999999999999999999755 8889999
Q ss_pred cccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCce
Q 017849 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY 312 (365)
Q Consensus 233 ~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 312 (365)
.|.||+..++...+. ..+||+|+.++..|
T Consensus 244 ~r~DfV~GvL~~dil---------------------------------------------------g~kI~~~~~~~~~y 272 (673)
T KOG1461|consen 244 TRDDFVRGVLVDDIL---------------------------------------------------GYKIHVHVLSSIDY 272 (673)
T ss_pred ehhhhhhhhhhhhhc---------------------------------------------------CCeEEEEEcChhhh
Confidence 899999877665442 26899999876669
Q ss_pred EEEeCCHHHHHHHhHHHhhhh
Q 017849 313 CVRLNSIQAFMDINRDVIGEA 333 (365)
Q Consensus 313 ~~ri~~~~~Y~~~n~~~l~~~ 333 (365)
+.|++++++|..+|+|+|+||
T Consensus 273 A~rv~n~~syd~vSkDiI~RW 293 (673)
T KOG1461|consen 273 AARVENLRSYDLVSKDIIQRW 293 (673)
T ss_pred hhhhcccHHHHHHHHHHHHhh
Confidence 999999999999999999998
No 6
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=8.6e-37 Score=295.90 Aligned_cols=246 Identities=23% Similarity=0.344 Sum_probs=186.6
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-cCCcce
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRLHV 79 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~~~~v 79 (365)
+++|||||||.||||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++. .+.+.+|+...| ..+...
T Consensus 5 ~~~avILAaG~GtRl~PL-T~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~ 81 (407)
T PRK00844 5 KVLAIVLAGGEGKRLMPL-TADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYK--SHSLDRHISQTWRLSGLLG 81 (407)
T ss_pred ceEEEEECCCCCCccchh-hcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHHhCcCccccCC
Confidence 489999999999999999 99999999999999 9999999999999999999999976 458899996422 112222
Q ss_pred EEEEc-C--------CCCChHHHHHHHHHHcCC---CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcc
Q 017849 80 EVATV-P--------EDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSE 147 (365)
Q Consensus 80 ~i~~~-~--------~~~gt~~al~~~~~~i~~---~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~ 147 (365)
.++.. + ...||++|++.+++++.+ ++|+|++||++++.++.++++.|+++++++|+++...+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~---- 157 (407)
T PRK00844 82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPRE---- 157 (407)
T ss_pred CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchH----
Confidence 23221 1 148999999999998853 3499999999999999999999999999999888654321
Q ss_pred CCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc-
Q 017849 148 AGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ- 226 (365)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~- 226 (365)
.+..||++.+|++++ +..+.+++...... + ....+.++++|+|+|++++|..++++
T Consensus 158 -----------~~~~~Gvv~~d~~g~-v~~~~eKp~~~~~~--~---------~~~~~~~~~~Giyi~~~~~l~~~l~~~ 214 (407)
T PRK00844 158 -----------EASAFGVIEVDPDGR-IRGFLEKPADPPGL--P---------DDPDEALASMGNYVFTTDALVDALRRD 214 (407)
T ss_pred -----------HcccCCEEEECCCCC-EEEEEECCCCcccc--c---------CCCCCcEEEeEEEEEeHHHHHHHHHHh
Confidence 256789999998776 45666433211100 0 01225789999999999998665553
Q ss_pred ---CccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEE
Q 017849 227 ---KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 303 (365)
Q Consensus 227 ---~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (365)
.....++..|++|.|++++ +++
T Consensus 215 ~~~~~~~~~~~~dii~~l~~~~-------------------------------------------------------~v~ 239 (407)
T PRK00844 215 AADEDSSHDMGGDIIPRLVERG-------------------------------------------------------RAY 239 (407)
T ss_pred hcCCcccccchhhHHHHHhccC-------------------------------------------------------eEE
Confidence 1234566779999887653 234
Q ss_pred EEEe----------cCCceEEEeCCHHHHHHHhHHHhhh
Q 017849 304 VYIA----------SNSKYCVRLNSIQAFMDINRDVIGE 332 (365)
Q Consensus 304 ~~~~----------~~~~y~~ri~~~~~Y~~~n~~~l~~ 332 (365)
+|.+ ..+|||.+|+++.+|+++||++|++
T Consensus 240 ~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~ 278 (407)
T PRK00844 240 VYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSV 278 (407)
T ss_pred EEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCC
Confidence 5543 1258999999999999999999963
No 7
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1e-36 Score=296.79 Aligned_cols=253 Identities=22% Similarity=0.352 Sum_probs=196.6
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-cCCc--
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRL-- 77 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~~~-- 77 (365)
+++|||||||.|+||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++. .+.+.+|+.+.+ ....
T Consensus 3 ~~~AVILAaG~GtRL~PL-T~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~--~~~i~~~l~~~~~~~~~~~ 79 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPL-TKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFN--SASLNRHISQTYNFDGFSG 79 (429)
T ss_pred cEEEEEECCCCCCcchhh-hcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCC--HHHHHHHHhcCcCccccCC
Confidence 468999999999999999 99999999999999 9999999999999999999999975 358888887522 1111
Q ss_pred c-eEEEE--c--CC---CCChHHHHHHHHHHcCC---CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCc
Q 017849 78 H-VEVAT--V--PE---DVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLS 146 (365)
Q Consensus 78 ~-v~i~~--~--~~---~~gt~~al~~~~~~i~~---~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~ 146 (365)
+ +.+.. + .+ ..||++|++.+++++.. ++|+|++||++++.++..+++.|++.++++|+++.+.+..
T Consensus 80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~--- 156 (429)
T PRK02862 80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEK--- 156 (429)
T ss_pred CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChh---
Confidence 2 22221 1 11 27999999999988852 6799999999999999999999999999999988654311
Q ss_pred cCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccc--cccccccHHHHhhcCc-ceeccCcccceeeeeCHHHHHHH
Q 017849 147 EAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAEL--EKDTRIRKSILRAVGQ-MDIRADLMDAHMYAFNRSVLQEV 223 (365)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~--ek~~~i~~~~l~~~~~-~~~~~~l~~~giyi~s~~vl~~~ 223 (365)
.+..||++.+|+++++ ..+.++++. .+.+.++.++|...+. ......++++|+|+|++++|..+
T Consensus 157 ------------~~~~yG~i~~d~~g~V-~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~ 223 (429)
T PRK02862 157 ------------DASGFGLMKTDDDGRI-TEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDL 223 (429)
T ss_pred ------------hcccceEEEECCCCcE-EEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHH
Confidence 2567899999987765 566665432 1234556666655442 22345689999999999999877
Q ss_pred HhcCccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEE
Q 017849 224 LDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 303 (365)
Q Consensus 224 ~~~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (365)
+.+.+++.++.+|++|.+++. .+++
T Consensus 224 l~~~~~~~~~~~dil~~l~~~-------------------------------------------------------~~v~ 248 (429)
T PRK02862 224 LNKNPEYTDFGKEIIPEAIRD-------------------------------------------------------YKVQ 248 (429)
T ss_pred HHHCCChhhhHHHHHHHHhcc-------------------------------------------------------CcEE
Confidence 766555567778999886522 2467
Q ss_pred EEEecCCceEEEeCCHHHHHHHhHHHh
Q 017849 304 VYIASNSKYCVRLNSIQAFMDINRDVI 330 (365)
Q Consensus 304 ~~~~~~~~y~~ri~~~~~Y~~~n~~~l 330 (365)
+|.+ +|||.+++|+.+|+++|++++
T Consensus 249 ~~~~--~g~w~digt~~~y~~an~~l~ 273 (429)
T PRK02862 249 SYLF--DGYWEDIGTIEAFYEANLALT 273 (429)
T ss_pred EEEe--CCEEEeCCCHHHHHHHHHHHH
Confidence 8877 789999999999999999998
No 8
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.4e-36 Score=296.54 Aligned_cols=256 Identities=19% Similarity=0.326 Sum_probs=192.1
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-cC-C--
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VD-R-- 76 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~-~-- 76 (365)
+|+|||||||+|+||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|++++. .+.+.+|++..| .+ .
T Consensus 3 ~~~aIIlA~G~gtRl~Pl-T~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~--~~~i~~~l~~~~~~~~~~~ 79 (436)
T PLN02241 3 SVAAIILGGGAGTRLFPL-TKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN--SASLNRHLSRAYNFGNGGN 79 (436)
T ss_pred ceEEEEEeCCCCCcchhh-hcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccC--HHHHHHHHhccCCCCCCcc
Confidence 589999999999999999 99999999999997 9999999999999999999999976 358899997532 11 0
Q ss_pred ---cceEEEE--cC-----CCCChHHHHHHHHHHcC------CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeee
Q 017849 77 ---LHVEVAT--VP-----EDVGTAGALRAIAHHLT------AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSV 140 (365)
Q Consensus 77 ---~~v~i~~--~~-----~~~gt~~al~~~~~~i~------~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~ 140 (365)
..+.+.. +. .+.|++++++.++.++. .++||+++||++++.++.++++.|+++++++|+++.++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v 159 (436)
T PLN02241 80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPV 159 (436)
T ss_pred cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEec
Confidence 1133322 21 35899999998876653 36899999999999999999999999999999988765
Q ss_pred ccCCCccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccc--cccccHHHHhhcC-cceeccCcccceeeeeCH
Q 017849 141 PVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVG-QMDIRADLMDAHMYAFNR 217 (365)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek--~~~i~~~~l~~~~-~~~~~~~l~~~giyi~s~ 217 (365)
+.. ++..|+++.+|++++ +..+.+++.... ..+++.++|...+ .++...+++++|+|+|++
T Consensus 160 ~~~---------------~~~~ygvv~~d~~~~-v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~ 223 (436)
T PLN02241 160 DES---------------RASDFGLMKIDDTGR-IIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKK 223 (436)
T ss_pred chh---------------hcCcceEEEECCCCC-EEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEH
Confidence 421 256789999988776 467765442211 1222333322111 122235799999999999
Q ss_pred HHHHHHHhcCcc-ccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCC
Q 017849 218 SVLQEVLDQKDK-FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPV 296 (365)
Q Consensus 218 ~vl~~~~~~~~~-~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (365)
++|..++++.+. ..++..|++|.+++.+
T Consensus 224 ~~l~~ll~~~~~~~~~~~~dil~~l~~~g--------------------------------------------------- 252 (436)
T PLN02241 224 DVLLKLLRWRFPTANDFGSEIIPGAIKEG--------------------------------------------------- 252 (436)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHhhcC---------------------------------------------------
Confidence 999777664322 2245567777665432
Q ss_pred CceeEEEEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 017849 297 RRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE 332 (365)
Q Consensus 297 ~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~ 332 (365)
.++++|.+ +|||.+|+++.+|+++||++|..
T Consensus 253 ---~~v~~~~~--~gyw~dIg~~~~y~~a~~~~l~~ 283 (436)
T PLN02241 253 ---YNVQAYLF--DGYWEDIGTIKSFYEANLALTKQ 283 (436)
T ss_pred ---CeEEEEee--CCEEEECCCHHHHHHHHHHHhcC
Confidence 35788888 78999999999999999999964
No 9
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.8e-36 Score=289.53 Aligned_cols=238 Identities=21% Similarity=0.375 Sum_probs=184.6
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhh--h-cCC-
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAA--Y-VDR- 76 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~--~-~~~- 76 (365)
+|+|||||||+||||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++. .+.+.+|+++. | .+.
T Consensus 3 ~m~avILAaG~GtRl~pl-T~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~ 79 (380)
T PRK05293 3 EMLAMILAGGQGTRLGKL-TKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQ--PLELNNHIGIGSPWDLDRI 79 (380)
T ss_pred cEEEEEECCCCCcccchh-hcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCC--HHHHHHHHhCCCcccccCC
Confidence 499999999999999999 99999999999999 9999999999999999999999976 45888888641 1 111
Q ss_pred -cceEEE--E--cCC---CCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 017849 77 -LHVEVA--T--VPE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL 145 (365)
Q Consensus 77 -~~v~i~--~--~~~---~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~ 145 (365)
.++.+. . +.+ +.||++|++.+++++. .++|+|++||.+++.++.++++.|++.++++|+++...+..
T Consensus 80 ~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~-- 157 (380)
T PRK05293 80 NGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWE-- 157 (380)
T ss_pred CCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchh--
Confidence 123332 2 222 4899999999999885 25799999999999999999999999889888877654321
Q ss_pred ccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849 146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (365)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~ 225 (365)
++..||++.+|+++++ ..+.+ |+. ...++++++|+|+|++++|..+++
T Consensus 158 -------------~~~~yG~v~~d~~g~V-~~~~e-----Kp~-------------~~~~~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 158 -------------EASRFGIMNTDENMRI-VEFEE-----KPK-------------NPKSNLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred -------------hccccCEEEECCCCcE-EEEEe-----CCC-------------CCCcceeeeEEEEEcHHHHHHHHH
Confidence 2567899999877654 56653 321 112478899999999999977765
Q ss_pred cCc----cccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeE
Q 017849 226 QKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 301 (365)
Q Consensus 226 ~~~----~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (365)
+.. ...++..|+++.+++++ .+
T Consensus 206 ~~~~~~~~~~~~~~d~i~~l~~~~------------------------------------------------------~~ 231 (380)
T PRK05293 206 EDEKNPNSSHDFGKNVIPLYLEEG------------------------------------------------------EK 231 (380)
T ss_pred HHhhcCCchhhhHHHHHHHHhhcC------------------------------------------------------Ce
Confidence 321 22344467777766442 35
Q ss_pred EEEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 017849 302 CCVYIASNSKYCVRLNSIQAFMDINRDVIGE 332 (365)
Q Consensus 302 ~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~ 332 (365)
+++|.. +|||..++++.+|+++|++++..
T Consensus 232 v~~~~~--~g~w~digt~~~~~~a~~~~l~~ 260 (380)
T PRK05293 232 LYAYPF--KGYWKDVGTIESLWEANMELLRP 260 (380)
T ss_pred EEEEEe--CCEEEeCCCHHHHHHHHHHHcCC
Confidence 688877 68999999999999999999964
No 10
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=8.8e-36 Score=289.94 Aligned_cols=245 Identities=20% Similarity=0.289 Sum_probs=185.4
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcc-hHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc-CC--c
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRP-VLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR--L 77 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkp-lI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~--~ 77 (365)
+++|||||||.||||+|| |..+||||+||+|+| ||+|+|++|.++|+++|+|++++. .+.+.+|+.+.|. .+ .
T Consensus 15 ~~~aVILAaG~GtRl~pL-T~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~--~~~i~~~~~~~~~~~~~~~ 91 (425)
T PRK00725 15 DTLALILAGGRGSRLKEL-TDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYK--AHSLIRHIQRGWSFFREEL 91 (425)
T ss_pred ceEEEEECCCCCCcchhh-hCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCC--HHHHHHHHHhhhcccccCC
Confidence 678999999999999999 999999999999996 999999999999999999999976 3588888875321 11 1
Q ss_pred --ceEEEE-------cCCCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 017849 78 --HVEVAT-------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL 145 (365)
Q Consensus 78 --~v~i~~-------~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~ 145 (365)
.+.+.. ++.+.||++|++.+++++. +++|+|++||++++.++.++++.|+++++++|+++...+..
T Consensus 92 ~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~-- 169 (425)
T PRK00725 92 GEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPRE-- 169 (425)
T ss_pred CCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchh--
Confidence 122221 1224899999999998885 35799999999999999999999999999999888664321
Q ss_pred ccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849 146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (365)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~ 225 (365)
++..||++.+|++++ +..+.+++..... .+ ....+.++++|+|+|++++|..++.
T Consensus 170 -------------~~~~yG~v~~d~~~~-V~~~~EKp~~~~~--~~---------~~~~~~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 170 -------------EASAFGVMAVDENDR-ITAFVEKPANPPA--MP---------GDPDKSLASMGIYVFNADYLYELLE 224 (425)
T ss_pred -------------hcccceEEEECCCCC-EEEEEECCCCccc--cc---------cCccceEEEeeEEEEeHHHHHHHHH
Confidence 256899999998776 4566643321100 00 0112578999999999999866654
Q ss_pred cC----ccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeE
Q 017849 226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 301 (365)
Q Consensus 226 ~~----~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (365)
+. ....++..|++|.+++++ +
T Consensus 225 ~~~~~~~~~~~~~~dii~~l~~~~-------------------------------------------------------~ 249 (425)
T PRK00725 225 EDAEDPNSSHDFGKDIIPKIVEEG-------------------------------------------------------K 249 (425)
T ss_pred HhhcCCCccchhhHHHHHHHhccC-------------------------------------------------------c
Confidence 31 122355578888776442 3
Q ss_pred EEEEEecC---------CceEEEeCCHHHHHHHhHHHhh
Q 017849 302 CCVYIASN---------SKYCVRLNSIQAFMDINRDVIG 331 (365)
Q Consensus 302 ~~~~~~~~---------~~y~~ri~~~~~Y~~~n~~~l~ 331 (365)
+++|.+.+ +|||.+|+|+.+|+++||++|.
T Consensus 250 v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~ 288 (425)
T PRK00725 250 VYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLAS 288 (425)
T ss_pred EEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcC
Confidence 46666532 4899999999999999999986
No 11
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=2.9e-34 Score=261.94 Aligned_cols=231 Identities=24% Similarity=0.379 Sum_probs=178.4
Q ss_pred EEEEcCC--CCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHh-CCCCeEEEEecCcchHHHHHHHHHhhhc-CCcceE
Q 017849 5 VVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYV-DRLHVE 80 (365)
Q Consensus 5 avIlA~G--~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~~~v~ 80 (365)
||||||| +|+||+|| |..+||||+||+|||||+|+|++|.+ +|+++|+|++++. .+.+.+|+++... .+..+.
T Consensus 1 ~iIla~G~~~GtRl~pl-t~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~--~~~i~~~l~~~~~~~~~~i~ 77 (257)
T cd06428 1 AVILVGGPQKGTRFRPL-SLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYP--ESVFSDFISDAQQEFNVPIR 77 (257)
T ss_pred CEEEccCCCCCcccCCc-cCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCC--HHHHHHHHHhcccccCceEE
Confidence 6999999 89999999 99999999999999999999999999 6999999999875 3578888875311 122344
Q ss_pred EEEcCCCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849 81 VATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (365)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~ 157 (365)
++.+....||+++++.+++++. .++|+|++||++++.++..+++.|+++++++|+++.+.+..
T Consensus 78 ~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~-------------- 143 (257)
T cd06428 78 YLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASRE-------------- 143 (257)
T ss_pred EecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcccc--------------
Confidence 4445567999999999988874 36799999999999999999999999999999888764311
Q ss_pred CCCCcceEEEEc-CCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcC---------
Q 017849 158 KKPGRYNIIGMD-PTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK--------- 227 (365)
Q Consensus 158 ~~~~~~~~v~~d-~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~--------- 227 (365)
.+..|+++.+| ++++ +..+.+ |+. ...++++++|+|+|++++|..+....
T Consensus 144 -~~~~yg~v~~d~~~g~-v~~~~E-----kp~-------------~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~ 203 (257)
T cd06428 144 -QASNYGCIVEDPSTGE-VLHYVE-----KPE-------------TFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQL 203 (257)
T ss_pred -ccccccEEEEeCCCCe-EEEEEe-----CCC-------------CcccceEEEEEEEECHHHHHHHhhhcccccccccc
Confidence 25678999988 4554 567764 321 12357899999999999996554211
Q ss_pred ---------ccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCc
Q 017849 228 ---------DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR 298 (365)
Q Consensus 228 ---------~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (365)
..+.++..|+++.++++
T Consensus 204 ~~~~~~~~~~~~~~~~~d~~~~l~~~------------------------------------------------------ 229 (257)
T cd06428 204 GDDNNREGRAEVIRLEQDVLTPLAGS------------------------------------------------------ 229 (257)
T ss_pred ccccccccccceeeehhhhhhHHhcc------------------------------------------------------
Confidence 12233445666655432
Q ss_pred eeEEEEEEecCCceEEEeCCHHHHHHHhHHH
Q 017849 299 THKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (365)
Q Consensus 299 ~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~ 329 (365)
.++++|.+ +|||..|+|+.+|+++||.+
T Consensus 230 -~~v~~~~~--~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 230 -GKLYVYKT--DDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred -CCEEEecC--CCeeecCCCHHHHHhHhhcC
Confidence 24688888 78999999999999999864
No 12
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=6.7e-34 Score=255.81 Aligned_cols=228 Identities=21% Similarity=0.407 Sum_probs=184.0
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
|+|||||||.|+||+|+ |..+||+|+|++|+|||+|++++|.++|+++|+|+++++. +.+.+|+..+ ....++.++
T Consensus 1 m~~iIlAaG~g~R~~~l-t~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~--~~~~~~l~~~-~~~~~~~i~ 76 (233)
T cd06425 1 MKALILVGGYGTRLRPL-TLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRP--EDMVPFLKEY-EKKLGIKIT 76 (233)
T ss_pred CcEEEecCCCccccCcc-ccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCH--HHHHHHHhcc-cccCCeEEE
Confidence 57999999999999999 9999999999999999999999999999999999998763 4788888754 222345554
Q ss_pred E--cCCCCChHHHHHHHHHHcCC--CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849 83 T--VPEDVGTAGALRAIAHHLTA--KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (365)
Q Consensus 83 ~--~~~~~gt~~al~~~~~~i~~--~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (365)
. +....|++++++.+.+++.. +++++++||++++.++.++++.|+++++++|+++.+.+
T Consensus 77 ~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 139 (233)
T cd06425 77 FSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE----------------- 139 (233)
T ss_pred eccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC-----------------
Confidence 4 45578999999999998864 67999999999999999999999999999998876542
Q ss_pred CCCcceEEEEcC-CCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccch
Q 017849 159 KPGRYNIIGMDP-TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDV 237 (365)
Q Consensus 159 ~~~~~~~v~~d~-~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d~ 237 (365)
.+..|+++.+|+ +++ +..+.+ |+. ...++++++|+|+|++++|..+ .+ ...++..++
T Consensus 140 ~~~~~g~v~~d~~~~~-v~~~~e-----kp~-------------~~~~~~~~~Giyi~~~~~l~~l-~~--~~~~~~~~~ 197 (233)
T cd06425 140 DPSKYGVVVHDENTGR-IERFVE-----KPK-------------VFVGNKINAGIYILNPSVLDRI-PL--RPTSIEKEI 197 (233)
T ss_pred CccccCeEEEcCCCCE-EEEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHHhc-cc--Ccccchhhh
Confidence 145789999988 554 556653 321 1125789999999999999765 33 234566788
Q ss_pred hhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeC
Q 017849 238 LPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLN 317 (365)
Q Consensus 238 lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~ 317 (365)
++.++++ .++++|.+ +|||..|+
T Consensus 198 ~~~l~~~-------------------------------------------------------~~v~~~~~--~g~w~dig 220 (233)
T cd06425 198 FPKMASE-------------------------------------------------------GQLYAYEL--PGFWMDIG 220 (233)
T ss_pred HHHHHhc-------------------------------------------------------CCEEEEee--CCEEEcCC
Confidence 8887644 24688888 78999999
Q ss_pred CHHHHHHHhHHHh
Q 017849 318 SIQAFMDINRDVI 330 (365)
Q Consensus 318 ~~~~Y~~~n~~~l 330 (365)
|+.+|+++++.+|
T Consensus 221 t~~~~~~a~~~~l 233 (233)
T cd06425 221 QPKDFLKGMSLYL 233 (233)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998765
No 13
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=259.79 Aligned_cols=291 Identities=20% Similarity=0.364 Sum_probs=211.0
Q ss_pred CcceEEEEcCC--CCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHh-CCCCeEEEEecCcchHHHHHHHHHhhhcC-C
Q 017849 1 MDFQVVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVD-R 76 (365)
Q Consensus 1 M~~~avIlA~G--~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~~-~ 76 (365)
|++.||||.|| +||||+|| +-+.||||+|++|+|||+|.++.|.+ .|+.+|+++--+.+ +.+.+++..-... +
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPL-Sf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e--~~f~~fis~~~~e~~ 77 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPL-SFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEE--RVFTDFISAIQQEFK 77 (407)
T ss_pred CceEEEEEecCCCCCcccccc-ccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccc--hHHHHHHHHHHhhcc
Confidence 78999999999 69999999 99999999999999999999999966 47999999876653 4667776542111 2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHcCC---CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849 77 LHVEVATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (365)
Q Consensus 77 ~~v~i~~~~~~~gt~~al~~~~~~i~~---~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~ 153 (365)
..+++..++.+.||+++|++.++.|-. +.+++++||..+++++.+|+++|+..++.+|++..++..+
T Consensus 78 ~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e---------- 147 (407)
T KOG1460|consen 78 VPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSRE---------- 147 (407)
T ss_pred cchhhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHh----------
Confidence 346667777889999999999887653 4699999999999999999999999999999998876521
Q ss_pred ccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcccccc
Q 017849 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSL 233 (365)
Q Consensus 154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~ 233 (365)
...+||.++-|++...++++. ||+. +.-++.++||+|+|++++|..+.+- ..-
T Consensus 148 -----~asnfG~lV~dP~t~evlHYv-----eKPs-------------TfvSd~InCGvYlF~~eif~~i~~v----~~q 200 (407)
T KOG1460|consen 148 -----QASNFGCLVEDPSTGEVLHYV-----EKPS-------------TFVSDIINCGVYLFTPEIFNAIAEV----YRQ 200 (407)
T ss_pred -----HhhccCeeeecCCcCceEEee-----cCcc-------------hhhhcccceeEEEecHHHHHHHHHH----HHH
Confidence 366899999998777778887 4543 3567999999999999999766321 112
Q ss_pred ccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceE
Q 017849 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (365)
Q Consensus 234 ~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 313 (365)
++|++.-. +++ ...+.- +.++ -.|+..-+|.+. +.-.+|+|.. .+||
T Consensus 201 ~~~~~~~~--~~~----~~l~~g---~~d~--------irLeqDvlspLa--------------g~k~lY~y~t--~~fW 247 (407)
T KOG1460|consen 201 RQDLLEVE--KDL----PLLQPG---PADF--------IRLEQDVLSPLA--------------GSKQLYAYET--TDFW 247 (407)
T ss_pred HHhhhhhh--hcc----cccCCC---ccce--------EEeechhhhhhc--------------CCCceEEEec--ccHH
Confidence 22211110 011 001100 0000 001112222221 1235789987 7799
Q ss_pred EEeCCHHHHHHHhHHHhhhhc---------------ccCCCCCCCCCCccCCCceeCCcccccCCC
Q 017849 314 VRLNSIQAFMDINRDVIGEAN---------------HLSGYNFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 314 ~ri~~~~~Y~~~n~~~l~~~~---------------~~~~~~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
..|.|..+=..+|+..|++.. .+.|+.|.+.+..+||+|+||+|++||+++
T Consensus 248 ~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~v 313 (407)
T KOG1460|consen 248 SQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANV 313 (407)
T ss_pred HHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCc
Confidence 999999988889999987531 134667778888888888888888888876
No 14
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=2.3e-34 Score=275.34 Aligned_cols=241 Identities=22% Similarity=0.349 Sum_probs=180.4
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc-CC---cce
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR---LHV 79 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~---~~v 79 (365)
|||||||.|+||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|++++.. +.+.+|+.+.+. .+ ..+
T Consensus 1 aiILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPL-TKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKS--HSLNRHIQRGWDFDGFIDGFV 77 (361)
T ss_pred CEEeCCCCCCccchh-hhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccCh--HHHHHHHHhccCccCccCCCE
Confidence 699999999999999 99999999999999 89999999999999999999999763 478888875321 11 123
Q ss_pred EEEEc-------CCCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCC
Q 017849 80 EVATV-------PEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAG 149 (365)
Q Consensus 80 ~i~~~-------~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~ 149 (365)
++... +...|++++++.+.+++. .++|++++||++++.++.++++.|++.++++|+++...+..
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~------ 151 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRK------ 151 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChH------
Confidence 33211 124799999999988775 35699999999999999999999998888888887654311
Q ss_pred CCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcC--
Q 017849 150 SSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-- 227 (365)
Q Consensus 150 ~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~-- 227 (365)
.+..|+++.+|+++++ ..+.+ |+.... +. .. .....++++|+|+|++++|.+++++.
T Consensus 152 ---------~~~~~g~v~~d~~~~v-~~~~e-----kp~~~~-~~-~~----~~~~~~~~~Giyi~~~~~l~~~l~~~~~ 210 (361)
T TIGR02091 152 ---------EASRFGVMQVDEDGRI-VDFEE-----KPANPP-SI-PG----MPDFALASMGIYIFDKDVLKELLEEDAD 210 (361)
T ss_pred ---------hcccccEEEECCCCCE-EEEEE-----CCCCcc-cc-cc----cccccEEeeeEEEEcHHHHHHHHHHHhh
Confidence 2567899999877764 56653 321100 00 00 00123899999999999986665531
Q ss_pred --ccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEE
Q 017849 228 --DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY 305 (365)
Q Consensus 228 --~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (365)
....++..|+++.|++++ +|++|
T Consensus 211 ~~~~~~~~~~d~l~~l~~~~-------------------------------------------------------~v~~~ 235 (361)
T TIGR02091 211 DPESSHDFGKDIIPRALEEG-------------------------------------------------------SVQAY 235 (361)
T ss_pred cCCcccccHHHHHHHHhhcC-------------------------------------------------------ceEEE
Confidence 123345567787776442 46888
Q ss_pred EecCCceEEEeCCHHHHHHHhHHHhhh
Q 017849 306 IASNSKYCVRLNSIQAFMDINRDVIGE 332 (365)
Q Consensus 306 ~~~~~~y~~ri~~~~~Y~~~n~~~l~~ 332 (365)
.+ ++||.+|+|+.+|+++|+++|.+
T Consensus 236 ~~--~~~w~digt~~~~~~a~~~~l~~ 260 (361)
T TIGR02091 236 LF--SGYWRDVGTIDSFWEANMDLVSV 260 (361)
T ss_pred ee--CCEEEECCCHHHHHHHHHHHhCC
Confidence 88 68999999999999999999974
No 15
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=1.1e-33 Score=261.47 Aligned_cols=236 Identities=15% Similarity=0.319 Sum_probs=178.7
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc-------
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV------- 74 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~------- 74 (365)
+|+|||||||.||||+|+ |..+||||+||+|||||+|+|++|..+|+++|+|++++. .+.+.+|+...+.
T Consensus 3 ~mkavILAaG~GTRL~Pl-T~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~--~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred ceEEEEECCCCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCC--hHHHHHHHhchHHHHHHHHH
Confidence 689999999999999999 999999999999999999999999999999999999976 4578888753210
Q ss_pred ---------------CCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccC--------CChHHHHHHHHhcCC
Q 017849 75 ---------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA 131 (365)
Q Consensus 75 ---------------~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--------~~l~~~l~~h~~~~a 131 (365)
....+.++.++++.||++|++.+.+++.+++|+|++||.+++ .++..+++.|.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~ 159 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred hcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCC
Confidence 012456677788899999999999999767899999998876 589999999987777
Q ss_pred eEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEc----CCCcE--EEEeeccccccccccccHHHHhhcCcceecc
Q 017849 132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQF--LLHIATGAELEKDTRIRKSILRAVGQMDIRA 205 (365)
Q Consensus 132 ~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~~--l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~ 205 (365)
.++++.. ++ + ++.+||++.++ +++++ +..+. ||+.... ...+
T Consensus 160 ~~~~~~~-~~-~---------------~~~~yGvv~~~~~~d~~g~v~~I~~~~-----EKP~~~~----------~~~s 207 (297)
T TIGR01105 160 SQVLAKR-MP-G---------------DLSEYSVIQTKEPLDREGKVSRIVEFI-----EKPDQPQ----------TLDS 207 (297)
T ss_pred cEEEEEE-cC-C---------------CCccceEEEecccccCCCCeeeEeEEE-----ECCCCcc----------cCCc
Confidence 6654432 21 1 25689999984 34542 34554 3432100 1246
Q ss_pred CcccceeeeeCHHHHHHHHhcCcccccccc----chhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCc
Q 017849 206 DLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ----DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS 281 (365)
Q Consensus 206 ~l~~~giyi~s~~vl~~~~~~~~~~~s~~~----d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (365)
+++++|+|+|++++|..+ +.... .+..+ |+++.|+++
T Consensus 208 ~~~~~GiYi~~~~i~~~l-~~~~~-~~~ge~~ltd~i~~l~~~------------------------------------- 248 (297)
T TIGR01105 208 DLMAVGRYVLSADIWAEL-ERTEP-GAWGRIQLTDAIAELAKK------------------------------------- 248 (297)
T ss_pred CEEEEEEEEECHHHHHHH-hcCCC-CCCCeeeHHHHHHHHHhc-------------------------------------
Confidence 899999999999999755 43221 12222 666665533
Q ss_pred ccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHH-hh
Q 017849 282 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-IG 331 (365)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~-l~ 331 (365)
-++++|.+ +|+|..|.++.+|.++|.++ |.
T Consensus 249 ------------------~~v~~~~~--~g~w~DiG~p~~~~~a~~~~~l~ 279 (297)
T TIGR01105 249 ------------------QSVDAMLM--TGDSYDCGKKMGYMQAFVKYGLR 279 (297)
T ss_pred ------------------CCEEEEEe--ccEEECCCCHHHHHHHHHHHHhc
Confidence 14688888 78999999999999999886 44
No 16
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=3.5e-34 Score=259.90 Aligned_cols=237 Identities=28% Similarity=0.552 Sum_probs=181.8
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
+|||||||.||||+|| |..+||||+|++|+ |||+|+|++|.++|++++++++.... .+.+.+|+++.......+.++
T Consensus 1 kavIla~G~GtRl~pl-t~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~-~~~i~~~~~~~~~~~~~i~~i 78 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPL-TDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYK-EEQIEEHLGSGYKFGVKIEYI 78 (248)
T ss_dssp EEEEEEESCCGGGTTT-TTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTT-HHHHHHHHTTSGGGTEEEEEE
T ss_pred CEEEECCCCCccCchh-hhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecc-cccccccccccccccccceee
Confidence 6999999999999999 99999999999999 99999999999999999666665332 457888887642112357777
Q ss_pred EcCCCCChHHHHHHHHHHcCCCc----EEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849 83 TVPEDVGTAGALRAIAHHLTAKD----VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~~~----~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (365)
.++...||++|++.+.+.+..+. |++++||++++.++.++++.|+++++++++.+...+..
T Consensus 79 ~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------- 143 (248)
T PF00483_consen 79 VQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE--------------- 143 (248)
T ss_dssp EESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS---------------
T ss_pred ecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhcccccccccccccccc---------------
Confidence 88888999999999999887654 99999999999999999999999988543333332211
Q ss_pred CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh---cCcccccccc
Q 017849 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD---QKDKFQSLKQ 235 (365)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~---~~~~~~s~~~ 235 (365)
.++.||++.+|++++ +..+.+ |+.. ...+.++++|+|+|++++|..+++ +......+-.
T Consensus 144 ~~~~~g~v~~d~~~~-V~~~~E-----KP~~------------~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (248)
T PF00483_consen 144 DPSRYGVVEVDEDGR-VIRIVE-----KPDN------------PNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLT 205 (248)
T ss_dssp GGGGSEEEEEETTSE-EEEEEE-----SCSS------------HSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHH
T ss_pred ccccceeeeecccee-EEEEec-----cCcc------------cccceeccCceEEEcchHHHHHhhhhhccchhhhHHH
Confidence 266899999998786 466664 4320 011579999999999999987743 2222333445
Q ss_pred chhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCc--eE
Q 017849 236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK--YC 313 (365)
Q Consensus 236 d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--y~ 313 (365)
|+++.++++. ..+.+|.. ++ ||
T Consensus 206 d~i~~~~~~~------------------------------------------------------~~~~~~~~--~~~~~w 229 (248)
T PF00483_consen 206 DAIPKLLEQG------------------------------------------------------KKVYAFIF--EGNAYW 229 (248)
T ss_dssp HHHHHHHHTT------------------------------------------------------CEEEEEEH--SSEE-E
T ss_pred HHHHHHHHcC------------------------------------------------------CceEEEEe--cCCeEE
Confidence 6777666553 23466776 55 89
Q ss_pred EEeCCHHHHHHHhHHHhh
Q 017849 314 VRLNSIQAFMDINRDVIG 331 (365)
Q Consensus 314 ~ri~~~~~Y~~~n~~~l~ 331 (365)
..|+|+.+|++||+++++
T Consensus 230 ~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 230 IDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp EETSSHHHHHHHHHHHHS
T ss_pred EECCCHHHHHHHHHHHhc
Confidence 999999999999999975
No 17
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=1.8e-34 Score=276.82 Aligned_cols=239 Identities=15% Similarity=0.253 Sum_probs=171.7
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhh--hcCCc-
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAA--YVDRL- 77 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~--~~~~~- 77 (365)
+|+|||||||+|+||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++.. .+.+.+|+.+. |..+.
T Consensus 2 ~~~avila~g~gtRL~PL-T~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~-~~~I~~~l~~~~~~~~~~~ 79 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPL-TKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE-RQSLFDHLGSGREWDLHRK 79 (369)
T ss_pred cEEEEEECCCCCcccccc-ccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCc-HHHHHHHHhCCCCCCcccc
Confidence 589999999999999999 99999999999999 99999999999999999999999763 13788988641 11110
Q ss_pred --ce-EEEEcCC-C--CChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccC
Q 017849 78 --HV-EVATVPE-D--VGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEA 148 (365)
Q Consensus 78 --~v-~i~~~~~-~--~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~ 148 (365)
+. .+..++. . .|+++++..+++++. +++|||++||++++.++.++++.|+++++++|+++.+++..
T Consensus 80 ~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~----- 154 (369)
T TIGR02092 80 RDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPA----- 154 (369)
T ss_pred cCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHH-----
Confidence 01 1223333 2 356667888888774 36799999999999999999999999999999988765310
Q ss_pred CCCCCccCCCCCCcc-eEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcC
Q 017849 149 GSSGAKDKTKKPGRY-NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK 227 (365)
Q Consensus 149 ~~~~~~~~~~~~~~~-~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~ 227 (365)
.+..| +++..++++. +..+.. +++. .....+++|+|+|++++|..++++.
T Consensus 155 ----------~~~~~g~vv~~~~~g~-v~~~~~----~~~~--------------~~~~~~~~Giyi~~~~~l~~~l~~~ 205 (369)
T TIGR02092 155 ----------DASEYDTILRFDESGK-VKSIGQ----NLNP--------------EEEENISLDIYIVSTDLLIELLYEC 205 (369)
T ss_pred ----------HccccCcEEEEcCCCC-EEeccc----cCCC--------------CCcceeeeeEEEEEHHHHHHHHHHH
Confidence 13456 4556766664 444421 1110 1124578999999999886665432
Q ss_pred c--cccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEE
Q 017849 228 D--KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY 305 (365)
Q Consensus 228 ~--~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (365)
. .....-.++++.+++. .++++|
T Consensus 206 ~~~~~~~~~~d~i~~~~~~-------------------------------------------------------~~v~~~ 230 (369)
T TIGR02092 206 IQRGKLTSLEELIRENLKE-------------------------------------------------------LNINAY 230 (369)
T ss_pred hhcCccccHHHHHHHHhcc-------------------------------------------------------CcEEEE
Confidence 1 1111122444443311 246888
Q ss_pred EecCCceEEEeCCHHHHHHHhHHHhhhh
Q 017849 306 IASNSKYCVRLNSIQAFMDINRDVIGEA 333 (365)
Q Consensus 306 ~~~~~~y~~ri~~~~~Y~~~n~~~l~~~ 333 (365)
.. +|||..|+|+.+|.++|+++|+++
T Consensus 231 ~~--~g~w~dIgt~~~l~~a~~~~l~~~ 256 (369)
T TIGR02092 231 EY--TGYLANINSVKSYYKANMDLLDPQ 256 (369)
T ss_pred ec--CCceeEcCCHHHHHHHHHHHhCCc
Confidence 77 789999999999999999999865
No 18
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=3.5e-34 Score=254.21 Aligned_cols=211 Identities=39% Similarity=0.646 Sum_probs=171.9
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-cCCcce--
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRLHV-- 79 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~~~~v-- 79 (365)
|+|||||||.|+||+|+ |..+||+|+|++|+|||+|+|+++..+|+++|+|++++.. .+.+.+++.... ..+...
T Consensus 1 ~~aVILAgG~g~R~~pl-t~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~-~~~i~~~l~~~~~~~~~~~~~ 78 (214)
T cd04198 1 FQAVILAGGGGSRLYPL-TDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEE-QAEISTYLRSFPLNLKQKLDE 78 (214)
T ss_pred CEEEEEeCCCCCcCCcc-ccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHH-HHHHHHHHHhcccccCcceeE
Confidence 68999999999999999 9999999999999999999999999999999999998543 245667765421 111122
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCC
Q 017849 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (365)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (365)
.+.......|++++|+.+.+.+ .++|++++||++++.++..+++.|++.++.+|+++.+....+.. .+++++.+.
T Consensus 79 ~~~~~~~~~gt~~al~~~~~~i-~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~----~~~~~~~~~ 153 (214)
T cd04198 79 VTIVLDEDMGTADSLRHIRKKI-KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQ----KGGKGKSKK 153 (214)
T ss_pred EEecCCCCcChHHHHHHHHhhc-CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccc----cCCcccccC
Confidence 2223356799999999998887 57899999999999999999999999999999998875532110 111223344
Q ss_pred CCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHH
Q 017849 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (365)
Q Consensus 160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl 220 (365)
...+.++.+|+++++++++.+..+.++...+++++++++|++.+++++.|+|||+|++|||
T Consensus 154 ~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 154 ADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 5678899999988888999876677788889999999999999999999999999999975
No 19
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=3.4e-33 Score=266.36 Aligned_cols=233 Identities=20% Similarity=0.317 Sum_probs=179.6
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~ 83 (365)
+|||||||.|+||+|| |..+||||+|++|||||+|+|++|.++|+++|+|++++.. .+.+.+|+.+...-...+.++.
T Consensus 1 kaiIlAaG~gtRl~pl-t~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 78 (353)
T TIGR01208 1 KALILAAGKGTRLRPL-TFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVT-GEEIKEIVGEGERFGAKITYIV 78 (353)
T ss_pred CEEEECCcCcCccCcc-ccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCC-HHHHHHHHhcccccCceEEEEE
Confidence 5899999999999999 9999999999999999999999999999999999998732 3578888864211112344555
Q ss_pred cCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcc
Q 017849 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY 163 (365)
Q Consensus 84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (365)
++...|++++++.+++++.+++|++++||.+++.++.++++.|+++++++|+++.+.+ ++..|
T Consensus 79 ~~~~~G~~~al~~a~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~-----------------~~~~~ 141 (353)
T TIGR01208 79 QGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR-----------------DPTAF 141 (353)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC-----------------ChhhC
Confidence 5667999999999999887678999999999999999999999999999998876532 24568
Q ss_pred eEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcc----ccccccchhh
Q 017849 164 NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQDVLP 239 (365)
Q Consensus 164 ~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~----~~s~~~d~lp 239 (365)
+++.+++++ ++..+.+ ++. ...++++++|+|+|++.+++.+ ++... ..++ .++++
T Consensus 142 g~~~~~~~~-~v~~~~e-----kp~-------------~~~~~~~~~Giy~~~~~l~~~l-~~~~~~~~~e~~l-~d~l~ 200 (353)
T TIGR01208 142 GVAVLEDGK-RILKLVE-----KPK-------------EPPSNLAVVGLYMFRPLIFEAI-KNIKPSWRGELEI-TDAIQ 200 (353)
T ss_pred eEEEEcCCC-cEEEEEE-----CCC-------------CCCccceEEEEEEECHHHHHHH-HhcCCCCCCcEEH-HHHHH
Confidence 888886544 4556653 321 1234788999999999877654 33211 0111 34555
Q ss_pred HHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCH
Q 017849 240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI 319 (365)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~ 319 (365)
.|++.+ .++++|.+ +|||..|+|+
T Consensus 201 ~l~~~g------------------------------------------------------~~v~~~~~--~g~w~digt~ 224 (353)
T TIGR01208 201 WLIEKG------------------------------------------------------YKVGGSKV--TGWWKDTGKP 224 (353)
T ss_pred HHHHcC------------------------------------------------------CeEEEEEe--CcEEEeCCCH
Confidence 544321 45788888 7899999999
Q ss_pred HHHHHHhHHHhhh
Q 017849 320 QAFMDINRDVIGE 332 (365)
Q Consensus 320 ~~Y~~~n~~~l~~ 332 (365)
.+|+++|+.++++
T Consensus 225 ~dl~~a~~~ll~~ 237 (353)
T TIGR01208 225 EDLLDANRLILDE 237 (353)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999985
No 20
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-33 Score=245.04 Aligned_cols=235 Identities=22% Similarity=0.372 Sum_probs=187.2
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
|+|||||||.||||+|+ |...||+|+||.+||||+|+|+.|..+||++|.|++++++. ..+.+++.+--.-...+++.
T Consensus 1 mKgiILAgG~GTRL~Pl-T~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~-~~~~~llGdgs~~gv~itY~ 78 (286)
T COG1209 1 MKGVILAGGSGTRLRPL-TRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDK-PTFKELLGDGSDFGVDITYA 78 (286)
T ss_pred CCcEEecCcCccccccc-cccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCch-hhhhhhhcCccccCcceEEE
Confidence 57999999999999999 99999999999999999999999999999999999997653 46666665410002457788
Q ss_pred EcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCc
Q 017849 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (365)
.|+++.|.|+|+..+.+++.+++|+++.||.++..++.+++..+.++++++++++.++. +|++
T Consensus 79 ~Q~~p~GlA~Av~~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~-----------------dP~r 141 (286)
T COG1209 79 VQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD-----------------DPSR 141 (286)
T ss_pred ecCCCCcHHHHHHHHHhhcCCCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC-----------------Cccc
Confidence 89999999999999999998899999999977766999999999988889999988875 4889
Q ss_pred ceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcC-cc-ccccc-cchhh
Q 017849 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-DK-FQSLK-QDVLP 239 (365)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~-~~-~~s~~-~d~lp 239 (365)
||++.+|++++ +..+. |||. .+.|++.-+|+|+|++.++..+ +.- ++ ...++ .|.+.
T Consensus 142 fGV~e~d~~~~-v~~l~-----EKP~-------------~P~SNlAvtGlY~~d~~Vf~~~-~~ikPS~RGElEITd~i~ 201 (286)
T COG1209 142 YGVVEFDEDGK-VIGLE-----EKPK-------------EPKSNLAVTGLYFYDPSVFEAI-KQIKPSARGELEITDAID 201 (286)
T ss_pred ceEEEEcCCCc-EEEeE-----ECCC-------------CCCCceeEEEEEEeChHHHHHH-HcCCCCCCCceEehHHHH
Confidence 99999999885 56777 4543 3568999999999999999644 442 21 11111 24444
Q ss_pred HHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCH
Q 017849 240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI 319 (365)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~ 319 (365)
.++.+. ....+... .|.|..+.+.
T Consensus 202 ~~i~~G------------------------------------------------------~~~~~~~~--~G~WlDtGt~ 225 (286)
T COG1209 202 LYIEKG------------------------------------------------------YLVVAILI--RGWWLDTGTP 225 (286)
T ss_pred HHHHcC------------------------------------------------------cEEEEEEc--cceEEecCCh
Confidence 444332 12233334 6799999999
Q ss_pred HHHHHHhHHHhhh
Q 017849 320 QAFMDINRDVIGE 332 (365)
Q Consensus 320 ~~Y~~~n~~~l~~ 332 (365)
.+|.+||+-++..
T Consensus 226 ~slleA~~~i~~~ 238 (286)
T COG1209 226 ESLLEANNFVRTV 238 (286)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999999863
No 21
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=3.5e-33 Score=248.40 Aligned_cols=203 Identities=27% Similarity=0.453 Sum_probs=162.2
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc--CC---c
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--DR---L 77 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~--~~---~ 77 (365)
++|||+|||.|+||+|| |..+||||+||+|||||+|+|++|.++|+++|+|++++. .+.+.+|+++... .. .
T Consensus 1 ~~aiIla~G~g~Rl~pl-t~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~--~~~i~~~l~~~~~~~~~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPL-TKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSH--SDQIKEYIEKSKWSKPKSSLM 77 (217)
T ss_pred CeEEEEcCCCccccccc-ccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCC--HHHHHHHHhhccccccccCcc
Confidence 58999999999999999 999999999999999999999999999999999999865 4589999986321 11 2
Q ss_pred ceEEEEcCCCCChHHHHHHHH--HHcCCCcEEEEeCCcccCCChHHHHHHHHh-----cCCeEEEEEeeeccCCCccCCC
Q 017849 78 HVEVATVPEDVGTAGALRAIA--HHLTAKDVLVVSGDLVSDVPPGAVTAAHRR-----HDAVVTAMICSVPVSGLSEAGS 150 (365)
Q Consensus 78 ~v~i~~~~~~~gt~~al~~~~--~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~-----~~a~~t~l~~~~~~~~~~~~~~ 150 (365)
.+.++.+++..|++++++... ..+ .++|++++||++++.++.++++.|++ +++++|+++.+.+..+
T Consensus 78 ~i~~~~~~~~~~~~~al~~~~~~~~~-~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~------ 150 (217)
T cd04197 78 IVIIIMSEDCRSLGDALRDLDAKGLI-RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPH------ 150 (217)
T ss_pred eEEEEeCCCcCccchHHHHHhhcccc-CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCcc------
Confidence 355555566788999987653 334 57899999999999999999999987 4899999887654210
Q ss_pred CCCccCCCCCCcceEEEEcCCCcEEEEeeccccccc--cccccHHHHhhcCcceeccCcccceeeeeCHHHH
Q 017849 151 SGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (365)
Q Consensus 151 ~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek--~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl 220 (365)
+.+....++++.+|+++.+++.+.+++...+ ...++++++.+++++.+++++.|+|||+|+++||
T Consensus 151 -----~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 151 -----RTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred -----ccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 0011234678888877444678887664332 3568999999999999999999999999999975
No 22
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=4.8e-32 Score=251.01 Aligned_cols=237 Identities=15% Similarity=0.304 Sum_probs=178.6
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-c------
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V------ 74 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~------ 74 (365)
+|+|||+|||.||||+|| |..+||||+||+|||||+|+|++|.++|+++|+|++++. .+.+.+|+...+ .
T Consensus 3 ~mkavIlAaG~GtRl~Pl-T~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred ceEEEEECCcCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCC--hHHHHHHHhcchhHHHHHhh
Confidence 578999999999999999 999999999999999999999999999999999999876 357888885311 0
Q ss_pred ---------------CCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccC--------CChHHHHHHHHhcCC
Q 017849 75 ---------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA 131 (365)
Q Consensus 75 ---------------~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--------~~l~~~l~~h~~~~a 131 (365)
-...+.++.++++.|+++|++.+++++.+++|+|+.||.+++ .|+.++++.|.+.++
T Consensus 80 ~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~ 159 (297)
T PRK10122 80 RVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred cchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHhCC
Confidence 012356677778899999999999998667899999998775 589999999988887
Q ss_pred eEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEc----CCCc--EEEEeeccccccccccccHHHHhhcCcceecc
Q 017849 132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQ--FLLHIATGAELEKDTRIRKSILRAVGQMDIRA 205 (365)
Q Consensus 132 ~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~--~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~ 205 (365)
+++++. .... .+..||++.+| +++. .+..+.+ |+.. +. ...+
T Consensus 160 ~~~~~~-~~~~----------------~~~~yGvv~~d~~~~~~g~v~~I~~~~E-----Kp~~---------~~-~~~s 207 (297)
T PRK10122 160 SQVLAK-RMPG----------------DLSEYSVIQTKEPLDREGKVSRIVEFIE-----KPDQ---------PQ-TLDS 207 (297)
T ss_pred cEEEEE-ECCC----------------CCCCceEEEecCcccCCCCeeeEEEEEE-----CCCC---------cc-cCCc
Confidence 755443 2210 25688999986 3453 2445553 3311 00 1235
Q ss_pred CcccceeeeeCHHHHHHHHhcCcccccccc----chhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCc
Q 017849 206 DLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ----DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS 281 (365)
Q Consensus 206 ~l~~~giyi~s~~vl~~~~~~~~~~~s~~~----d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (365)
+++++|+|+|++++|..+.+ ... .+..+ |+++.+++.
T Consensus 208 ~~~~~GiYi~~~~i~~~l~~-~~~-~~~~e~~ltd~i~~l~~~------------------------------------- 248 (297)
T PRK10122 208 DLMAVGRYVLSADIWPELER-TEP-GAWGRIQLTDAIAELAKK------------------------------------- 248 (297)
T ss_pred cEEEEEEEEECHHHHHHHHh-CCC-CCCCeeeHHHHHHHHHhC-------------------------------------
Confidence 78999999999999987643 211 12222 555554422
Q ss_pred ccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHH-hhh
Q 017849 282 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-IGE 332 (365)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~-l~~ 332 (365)
.++++|.+ +|+|..|.++.+|.+++.++ |..
T Consensus 249 ------------------~~v~~~~~--~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 249 ------------------QSVDAMLM--TGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred ------------------CCEEEEEe--CCEEEcCCCHHHHHHHHHHHHhcC
Confidence 24688888 78999999999999999998 543
No 23
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=3.8e-32 Score=247.21 Aligned_cols=225 Identities=19% Similarity=0.329 Sum_probs=177.9
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc--CCc----
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--DRL---- 77 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~--~~~---- 77 (365)
+|||||||.|+||+|+ |..+||+|+||+|||||+|+|++|.++|+++|+|++++. .+.+.+|+.+... ..+
T Consensus 1 kavilaaG~gtRl~~~-t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~~~~ 77 (254)
T TIGR02623 1 KAVILAGGLGTRISEE-THLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYK--GYVIKEYFANYFLHMSDVTFHM 77 (254)
T ss_pred CEEEEcCccccccCcc-ccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCC--HHHHHHHHHhhhhcccCeeEEe
Confidence 5899999999999999 999999999999999999999999999999999999976 3578888865321 011
Q ss_pred ---------------ceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeecc
Q 017849 78 ---------------HVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142 (365)
Q Consensus 78 ---------------~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~ 142 (365)
.+.+..+.+..||+++++.+++++.+++|++++||++++.++.++++.|.+.++++|++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~--- 154 (254)
T TIGR02623 78 ADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ--- 154 (254)
T ss_pred cccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec---
Confidence 12233334568999999999999876789999999999999999999999999999876532
Q ss_pred CCCccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHH
Q 017849 143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE 222 (365)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~ 222 (365)
++..||++.+|+ + .+..+.+ |+. ..+.++++|+|+|++++|.
T Consensus 155 ----------------~~~~yG~v~~d~-~-~V~~~~E-----kp~--------------~~~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 155 ----------------PPGRFGALDLEG-E-QVTSFQE-----KPL--------------GDGGWINGGFFVLNPSVLD- 196 (254)
T ss_pred ----------------CCCcccEEEECC-C-eEEEEEe-----CCC--------------CCCCeEEEEEEEEcHHHHh-
Confidence 145689998885 4 4567763 331 1246899999999999995
Q ss_pred HHhcCccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEE
Q 017849 223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC 302 (365)
Q Consensus 223 ~~~~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (365)
++++.. .++..|+++.++++ .++
T Consensus 197 ~l~~~~--~~~~~d~i~~l~~~-------------------------------------------------------~~v 219 (254)
T TIGR02623 197 LIDGDA--TVWEQEPLETLAQR-------------------------------------------------------GEL 219 (254)
T ss_pred hccccC--chhhhhHHHHHHhC-------------------------------------------------------CCE
Confidence 545422 35667888887644 235
Q ss_pred EEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 017849 303 CVYIASNSKYCVRLNSIQAFMDINRDVIG 331 (365)
Q Consensus 303 ~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~ 331 (365)
++|.+ +|||..|+|+.+|.+++...-.
T Consensus 220 ~~~~~--~g~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 220 SAYEH--SGFWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred EEEeC--CCEEecCCchHHHHHHHHHHHc
Confidence 88888 7899999999999999887743
No 24
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=7.8e-32 Score=243.46 Aligned_cols=233 Identities=20% Similarity=0.301 Sum_probs=172.9
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
|+|||||||.|+||+|+ |..+||+|+|++|+|||+|+|++|.++|+++|+|++++.. .+.+.+|+.+...-...+.+.
T Consensus 1 m~~iIlAaG~gtRl~pl-t~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~~l~~~~~~~~~i~~~ 78 (240)
T cd02538 1 MKGIILAGGSGTRLYPL-TKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPED-LPLFKELLGDGSDLGIRITYA 78 (240)
T ss_pred CeEEEEcCcCcccCCcc-ccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcch-HHHHHHHHhcccccCceEEEe
Confidence 57999999999999999 9999999999999999999999999999999999887543 346778886421001234444
Q ss_pred EcCCCCChHHHHHHHHHHcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCC
Q 017849 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG 161 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (365)
.++...|++++++.+.+++..+.+++++||. +.+.++.++++.|.++++++|+++...+ .+.
T Consensus 79 ~~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 141 (240)
T cd02538 79 VQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN-----------------DPE 141 (240)
T ss_pred eCCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC-----------------chh
Confidence 4455789999999999988767799999995 5567899999999888888888876542 245
Q ss_pred cceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCc--ccccc-ccchh
Q 017849 162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD--KFQSL-KQDVL 238 (365)
Q Consensus 162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~--~~~s~-~~d~l 238 (365)
.|+++.+|++|+ +..+.+ |+. ...++++++|+|+|++++|+.+ ++.. +...+ -.|++
T Consensus 142 ~~g~v~~d~~g~-v~~~~e-----kp~-------------~~~~~~~~~Giyi~~~~~l~~l-~~~~~~~~~~~~l~d~~ 201 (240)
T cd02538 142 RYGVVEFDENGR-VLSIEE-----KPK-------------KPKSNYAVTGLYFYDNDVFEIA-KQLKPSARGELEITDVN 201 (240)
T ss_pred cCceEEecCCCc-EEEEEE-----CCC-------------CCCCCeEEEEEEEECHHHHHHH-HhcCCCCCCeEEhHHHH
Confidence 789999998775 456663 321 1234688999999999998644 4221 11111 13666
Q ss_pred hHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCC
Q 017849 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS 318 (365)
Q Consensus 239 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~ 318 (365)
+.++++. ++.+|.++.+|||..|+|
T Consensus 202 ~~l~~~g-------------------------------------------------------~~~~~~~~~~g~w~digt 226 (240)
T cd02538 202 NEYLEKG-------------------------------------------------------KLSVELLGRGFAWLDTGT 226 (240)
T ss_pred HHHHHhC-------------------------------------------------------CeEEEEeCCCcEEEeCCC
Confidence 6655432 123444422589999999
Q ss_pred HHHHHHHhHHH
Q 017849 319 IQAFMDINRDV 329 (365)
Q Consensus 319 ~~~Y~~~n~~~ 329 (365)
+.+|+++|+.+
T Consensus 227 ~~~~~~a~~~~ 237 (240)
T cd02538 227 HESLLEASNFV 237 (240)
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 25
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=1e-31 Score=247.77 Aligned_cols=185 Identities=22% Similarity=0.376 Sum_probs=149.7
Q ss_pred Cc-ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 1 MD-FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 1 M~-~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
|. |+|||||||.||||+|+ |..+||||+||+|||||+|+|++|..+|+++|+|++.+.. .+.+.+|+++...-...+
T Consensus 1 m~~~kaIILAgG~GtRL~Pl-T~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~-~~~~~~~l~~g~~~g~~i 78 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPV-TMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGLNL 78 (292)
T ss_pred CCceEEEEECCCcccccCcc-cCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCc-hHHHHHHHcCccccCcee
Confidence 54 89999999999999999 9999999999999999999999999999999998876443 346778876421002345
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (365)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (365)
.++.++.+.|+++|+..+.+++.+++++++.||. +++.++.++++.|.+.++++|+++..++
T Consensus 79 ~y~~q~~~~Gta~Al~~a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~----------------- 141 (292)
T PRK15480 79 QYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN----------------- 141 (292)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC-----------------
Confidence 6677778899999999999998766788899995 4588999999999888888888876543
Q ss_pred CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV 223 (365)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~ 223 (365)
++++||++.+|+++++ ..+. ||+. ...++++++|+|+|++++++.+
T Consensus 142 ~p~~yGvv~~d~~g~v-~~i~-----EKP~-------------~p~s~~a~~GiY~~~~~v~~~~ 187 (292)
T PRK15480 142 DPERYGVVEFDQNGTA-ISLE-----EKPL-------------QPKSNYAVTGLYFYDNDVVEMA 187 (292)
T ss_pred CcccCcEEEECCCCcE-EEEE-----ECCC-------------CCCCCEEEEEEEEEChHHHHHH
Confidence 3678999999987764 5666 3432 2346899999999999998654
No 26
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=2.2e-31 Score=244.33 Aligned_cols=235 Identities=17% Similarity=0.296 Sum_probs=173.2
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-c-------
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V------- 74 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~------- 74 (365)
|+|||||||.|+||+|+ |..+||||+||+|||||+|+|++|.++|+++|+|+++++. +.+.+|+...+ .
T Consensus 1 mkaiIlAaG~gtRl~pl-t~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~ 77 (267)
T cd02541 1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGK--RAIEDHFDRSYELEETLEKK 77 (267)
T ss_pred CeEEEEcCCCCccCCCc-ccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCch--HHHHHHhCCcHHHHHHHHhc
Confidence 57999999999999999 9999999999999999999999999999999999999764 47888885321 0
Q ss_pred -------------CCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEEe
Q 017849 75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC 138 (365)
Q Consensus 75 -------------~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~~ 138 (365)
....+.++.++...|++++++.+++++..++|+|++||.++.. ++.++++.|++.++++ +++.
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 156 (267)
T cd02541 78 GKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVE 156 (267)
T ss_pred ccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEE
Confidence 0123445556667999999999999987678999999976643 4999999998877764 4443
Q ss_pred eeccCCCccCCCCCCccCCCCCCcceEEEEcCC---CcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeee
Q 017849 139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT---KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF 215 (365)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~---~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~ 215 (365)
..+.+ .+..|+++.+|++ ...+..+.+++..+ ...+.++++|+|+|
T Consensus 157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----------------~~~~~~~~~Giyi~ 205 (267)
T cd02541 157 EVPPE---------------DVSKYGIVKGEKIDGDVFKVKGLVEKPKPE----------------EAPSNLAIVGRYVL 205 (267)
T ss_pred EcChh---------------cCccceEEEeecCCCCceEEeEEEECCCCC----------------CCCCceEEEEEEEc
Confidence 33211 2467899999862 22456666432111 12347889999999
Q ss_pred CHHHHHHHHhcCccc---cccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCC
Q 017849 216 NRSVLQEVLDQKDKF---QSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNG 292 (365)
Q Consensus 216 s~~vl~~~~~~~~~~---~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (365)
++++|..+.+...+. ..+ .++++.+++.
T Consensus 206 ~~~~~~~l~~~~~~~~~e~~~-~d~i~~l~~~------------------------------------------------ 236 (267)
T cd02541 206 TPDIFDILENTKPGKGGEIQL-TDAIAKLLEE------------------------------------------------ 236 (267)
T ss_pred CHHHHHHHHhCCCCCCCcEEH-HHHHHHHHhc------------------------------------------------
Confidence 999997664311110 111 2445554432
Q ss_pred CCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHHh
Q 017849 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI 330 (365)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l 330 (365)
.++++|.+ +|||..|+|+.+|+++||++.
T Consensus 237 -------~~v~~~~~--~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 237 -------EPVYAYVF--EGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred -------CCEEEEEe--eeEEEeCCCHHHHHHHHHHHh
Confidence 25688888 689999999999999999973
No 27
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=5e-31 Score=241.03 Aligned_cols=230 Identities=16% Similarity=0.253 Sum_probs=169.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc--------
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-------- 74 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-------- 74 (365)
|+|||||||.|+||+|| |..+||||+||+|||||+|+|++|.++|+++|+|++++.. +.+.+|++..+.
T Consensus 1 m~avIlAaG~gtRl~pl-t~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~--~~i~~~~~~~~~~~~~~~~~ 77 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGK--RAIEDHFDTSYELEHQLEKR 77 (260)
T ss_pred CeEEEEcccCcccCCCc-ccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcH--HHHHHHhcccHHHHHHHHhh
Confidence 57999999999999999 9999999999999999999999999999999999999763 578888863110
Q ss_pred -------------CCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEEe
Q 017849 75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC 138 (365)
Q Consensus 75 -------------~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~~ 138 (365)
....+.+..+....|++++++.+++++..++|+|++||.++.. ++..+++.|++.++++ +++.
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~ 156 (260)
T TIGR01099 78 GKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVE 156 (260)
T ss_pred hhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEE
Confidence 0112344445567999999999999886678999999976643 7999999999888876 4443
Q ss_pred eeccCCCccCCCCCCccCCCCCCcceEEEEcC---CCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeee
Q 017849 139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP---TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF 215 (365)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~---~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~ 215 (365)
..+.+ .+..|+++.+|. ++..+..+.+++..+ ...++++++|+|+|
T Consensus 157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----------------~~~~~~~~~Giyi~ 205 (260)
T TIGR01099 157 EVPKE---------------EVSKYGVIDGEGVEEGLYEIKDMVEKPKPE----------------EAPSNLAIVGRYVL 205 (260)
T ss_pred ECChh---------------hcccCceEEeccccCCceeEEEEEECCCCC----------------CCCCceEEEEEEEC
Confidence 33211 256789998873 323456776433111 11346899999999
Q ss_pred CHHHHHHHHhcCcc---ccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCC
Q 017849 216 NRSVLQEVLDQKDK---FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNG 292 (365)
Q Consensus 216 s~~vl~~~~~~~~~---~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (365)
++++|..+.+...+ ..++ .|+++.++++
T Consensus 206 ~~~~~~~l~~~~~~~~~~~~l-~d~i~~l~~~------------------------------------------------ 236 (260)
T TIGR01099 206 TPDIFDLLEETPPGAGGEIQL-TDALRKLLEK------------------------------------------------ 236 (260)
T ss_pred CHHHHHHHHhCCCCCCCceeH-HHHHHHHHhc------------------------------------------------
Confidence 99999877443211 1112 2455554432
Q ss_pred CCCCCceeEEEEEEecCCceEEEeCCHHHHHHH
Q 017849 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDI 325 (365)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~ 325 (365)
.++++|.+ +|||..|+|+.+|+++
T Consensus 237 -------~~v~~~~~--~g~w~digs~~~y~~a 260 (260)
T TIGR01099 237 -------ETVYAYKF--KGKRYDCGSKLGYLKA 260 (260)
T ss_pred -------CCEEEEEc--ceEEEeCCCHHHHhhC
Confidence 24688888 7899999999999974
No 28
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=9.7e-31 Score=240.87 Aligned_cols=182 Identities=21% Similarity=0.378 Sum_probs=146.3
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~ 83 (365)
+|||||||.||||+|+ |..+||+|+||+|||||+|+|++|..+|+++|+|++.+.. .+.+.+++.+...-...+.++.
T Consensus 1 kaIILAgG~GtRL~pl-T~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~-~~~~~~~lg~g~~~g~~i~~~~ 78 (286)
T TIGR01207 1 KGIILAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGVNLSYAV 78 (286)
T ss_pred CEEEECCCCCccCCcc-cCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCc-HHHHHHHhccccccCceEEEEE
Confidence 5899999999999999 9999999999999999999999999999999998886443 3467777764110023455666
Q ss_pred cCCCCChHHHHHHHHHHcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCc
Q 017849 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (365)
Q Consensus 84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (365)
++++.|+++|++.+.+++.+++++++.||. +++.++.++++.|.+.++++|+++..++ ++.+
T Consensus 79 q~~~~Gta~al~~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~-----------------~p~~ 141 (286)
T TIGR01207 79 QPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS-----------------DPER 141 (286)
T ss_pred ccCCCCHHHHHHHHHHHhCCCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc-----------------CHHH
Confidence 677899999999999999767889999995 5688999999999888888888876653 2668
Q ss_pred ceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV 223 (365)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~ 223 (365)
||++.+|++++ +..+.+ |+. ...++++++|+|+|++++++.+
T Consensus 142 yGvv~~d~~g~-V~~i~E-----Kp~-------------~~~s~~~~~GiYi~~~~i~~~l 183 (286)
T TIGR01207 142 YGVVEFDSNGR-AISIEE-----KPA-------------QPKSNYAVTGLYFYDNRVVEIA 183 (286)
T ss_pred CceEEECCCCe-EEEEEE-----CCC-------------CCCCCEEEEEEEEEchHHHHHH
Confidence 99999998775 456663 432 1245789999999999987644
No 29
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.98 E-value=2.5e-30 Score=232.98 Aligned_cols=232 Identities=20% Similarity=0.342 Sum_probs=178.1
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
|+|||+|||.|+||+|+ |..+||+|+|++|+|||+|++++|.++|+++|+|++++. .+.+.+++.+...-...+.++
T Consensus 1 m~avIlAaG~g~Rl~pl-t~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~--~~~~~~~~~~~~~~~~~i~~~ 77 (236)
T cd04189 1 MKGLILAGGKGTRLRPL-TYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPT--GEEIKEALGDGSRFGVRITYI 77 (236)
T ss_pred CeEEEECCCcccccccc-ccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCC--HHHHHHHhcchhhcCCeEEEE
Confidence 68999999999999999 999999999999999999999999999999999999874 357888886521112345555
Q ss_pred EcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCc
Q 017849 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (365)
.++...|++++++.+..++..+++++++||.+++.++.++++.|.+.++++++++.+.+ .+..
T Consensus 78 ~~~~~~g~~~sl~~a~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 140 (236)
T cd04189 78 LQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE-----------------DPRR 140 (236)
T ss_pred ECCCCCChHHHHHHHHHhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC-----------------Cccc
Confidence 55667899999999999886578999999999999999999999988888888776532 1456
Q ss_pred ceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcc---ccccccchhh
Q 017849 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK---FQSLKQDVLP 239 (365)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~---~~s~~~d~lp 239 (365)
|+++.+|+ + .+..+.+ |+. ...+.+.++|+|+|++++|..+...... ..++ .++++
T Consensus 141 ~g~~~~d~-~-~v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~d~~~ 199 (236)
T cd04189 141 FGVAVVDD-G-RIVRLVE-----KPK-------------EPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TDAIQ 199 (236)
T ss_pred ceEEEEcC-C-eEEEEEE-----CCC-------------CCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH-HHHHH
Confidence 78888875 4 4556553 321 1124688999999999999765321111 0111 35666
Q ss_pred HHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCH
Q 017849 240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI 319 (365)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~ 319 (365)
.+++.+ .++++|.+ +|||..|+|+
T Consensus 200 ~~i~~g------------------------------------------------------~~v~~~~~--~~~~~~i~t~ 223 (236)
T cd04189 200 WLIDRG------------------------------------------------------RRVGYSIV--TGWWKDTGTP 223 (236)
T ss_pred HHHHcC------------------------------------------------------CcEEEEEc--CceEEeCCCH
Confidence 555332 34678877 7899999999
Q ss_pred HHHHHHhHHHhh
Q 017849 320 QAFMDINRDVIG 331 (365)
Q Consensus 320 ~~Y~~~n~~~l~ 331 (365)
..|.++|+.+|+
T Consensus 224 ~dl~~a~~~~l~ 235 (236)
T cd04189 224 EDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHHh
Confidence 999999999986
No 30
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.98 E-value=5.4e-31 Score=233.99 Aligned_cols=206 Identities=32% Similarity=0.504 Sum_probs=158.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh----cCCcc
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY----VDRLH 78 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~----~~~~~ 78 (365)
|+|||+|||.|+||.|+ |...||+|+|++|+|||+|+|++|.++|+++|+|++++.. +.+.+++.+.. ....+
T Consensus 1 ~~avIlagg~g~rl~pl-t~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~--~~~~~~~~~~~~~~~~~~~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPL-TSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHS--QAIIEHLLKSKWSSLSSKMI 77 (216)
T ss_pred CeEEEEeCCCccccCcc-ccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcH--HHHHHHHHhcccccccCCce
Confidence 68999999999999999 9999999999999999999999999999999999999764 36667775421 11123
Q ss_pred eEEEE--cCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHH--HHhcCCeEEEEEeeeccCCCccCCCCCCc
Q 017849 79 VEVAT--VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAA--HRRHDAVVTAMICSVPVSGLSEAGSSGAK 154 (365)
Q Consensus 79 v~i~~--~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~--h~~~~a~~t~l~~~~~~~~~~~~~~~~~~ 154 (365)
+.+.. +....|++++++.+.+.+ .++|++++||++++.++..++++ +...++++|+.+.........
T Consensus 78 v~~~~~~~~~~~Gta~~l~~~~~~i-~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~-------- 148 (216)
T cd02507 78 VDVITSDLCESAGDALRLRDIRGLI-RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVST-------- 148 (216)
T ss_pred EEEEEccCCCCCccHHHHHHHhhcC-CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCc--------
Confidence 33333 245799999999999888 57899999999999999999965 555566677666554321100
Q ss_pred cCCCCCCcceEEEEcCCC--cEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHH
Q 017849 155 DKTKKPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (365)
Q Consensus 155 ~~~~~~~~~~~v~~d~~~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl 220 (365)
...+....++++.+|+++ .+++++.++++..+...++.++++++|++.+++++.|+|||+|+++||
T Consensus 149 ~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 149 EQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred cccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 001235678999999986 344455544433344456999999999999999999999999999975
No 31
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.97 E-value=6.1e-30 Score=232.87 Aligned_cols=224 Identities=18% Similarity=0.308 Sum_probs=172.4
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc--CCcce---
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--DRLHV--- 79 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~--~~~~v--- 79 (365)
|||||||.|+||+|+ |..+||||+||+|+|||+|+++++..+|+++|+|++++. .+.+.+|+.+... ..+.+
T Consensus 1 aiilaaG~g~Rl~pl-t~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~~~~~ 77 (253)
T cd02524 1 VVILAGGLGTRLSEE-TELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYK--GHVIKEYFLNYFLHNSDVTIDLG 77 (253)
T ss_pred CEEEecCCccccCCc-cCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCC--HHHHHHHHHhhhhhcCceeEeec
Confidence 699999999999999 999999999999999999999999999999999999976 4588888875321 11111
Q ss_pred ----------------EEEEcCCCCChHHHHHHHHHHcCC-CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeecc
Q 017849 80 ----------------EVATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142 (365)
Q Consensus 80 ----------------~i~~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~ 142 (365)
.++......|++++++.+++++.. ++|++++||++++.++..+++.|...++++|+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--- 154 (253)
T cd02524 78 TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--- 154 (253)
T ss_pred ccceeeecccccccceeecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec---
Confidence 111112246799999999999865 789999999999999999999999989999887542
Q ss_pred CCCccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHH
Q 017849 143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE 222 (365)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~ 222 (365)
.+..|+++.+|+++++ ..+.+ |+. ..+.++++|+|+|+++++..
T Consensus 155 ----------------~~~~~g~v~~d~~g~V-~~~~e-----kp~--------------~~~~~i~~Giyi~~~~l~~~ 198 (253)
T cd02524 155 ----------------PPGRFGELDLDDDGQV-TSFTE-----KPQ--------------GDGGWINGGFFVLEPEVFDY 198 (253)
T ss_pred ----------------CCCcccEEEECCCCCE-EEEEE-----CCC--------------CCCceEEEEEEEECHHHHHh
Confidence 1346788999988764 56653 321 11357899999999999865
Q ss_pred HHhcCccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEE
Q 017849 223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC 302 (365)
Q Consensus 223 ~~~~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (365)
+ ... ..++..|+++.|++. -++
T Consensus 199 l-~~~--~~~~~~d~l~~li~~-------------------------------------------------------~~v 220 (253)
T cd02524 199 I-DGD--DTVFEREPLERLAKD-------------------------------------------------------GEL 220 (253)
T ss_pred h-ccc--cchhhHHHHHHHHhc-------------------------------------------------------CCE
Confidence 5 332 123335777766643 135
Q ss_pred EEEEecCCceEEEeCCHHHHHHHhHHHh
Q 017849 303 CVYIASNSKYCVRLNSIQAFMDINRDVI 330 (365)
Q Consensus 303 ~~~~~~~~~y~~ri~~~~~Y~~~n~~~l 330 (365)
++|.+ +|||..|+|+.+|.+++..+-
T Consensus 221 ~~~~~--~g~w~~I~t~~~~~~~~~~~~ 246 (253)
T cd02524 221 MAYKH--TGFWQCMDTLRDKQTLEELWN 246 (253)
T ss_pred EEEec--CCEEEeCcCHHHHHHHHHHHH
Confidence 78887 689999999999999996663
No 32
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.97 E-value=8.7e-30 Score=236.35 Aligned_cols=231 Identities=13% Similarity=0.242 Sum_probs=173.0
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh--c---C--
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--V---D-- 75 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~--~---~-- 75 (365)
|+|||+|||.|+||+|+ |..+||+|+||+|||+|+|+|++|.++|+++|+|++++.. +.+.+|+...+ . +
T Consensus 9 ~~aiIlaaG~g~Rl~~~-t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPA-TKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSK--NSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred eEEEEECCcCCccCCCc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCH--HHHHHHHccchhhhhhhhhh
Confidence 67999999999999999 9999999999999999999999999999999999999763 57888886411 0 0
Q ss_pred ---------------CcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccC--------CChHHHHHHHHhcCCe
Q 017849 76 ---------------RLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDAV 132 (365)
Q Consensus 76 ---------------~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--------~~l~~~l~~h~~~~a~ 132 (365)
...+.++.+.+..|+++|++.+.+++.+++|+|++||.+++ .++.++++.|++.+++
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~ 165 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS 165 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence 11233444566799999999999888667899999997653 7999999999888876
Q ss_pred EEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcC----CC--cEEEEeeccccccccccccHHHHhhcCcceeccC
Q 017849 133 VTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP----TK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRAD 206 (365)
Q Consensus 133 ~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~----~~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~ 206 (365)
|+++...+ .+..||++.++. .+ ..+..+.+++..+ ...++
T Consensus 166 -tl~~~~~~-----------------~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~----------------~~~s~ 211 (302)
T PRK13389 166 -QIMVEPVA-----------------DVTAYGVVDCKGVELAPGESVPMVGVVEKPKAD----------------VAPSN 211 (302)
T ss_pred -EEEEEEcc-----------------cCCcceEEEecCcccccCCcceEEEEEECCCCC----------------CCCcc
Confidence 55554432 256789998874 11 2355666432211 12357
Q ss_pred cccceeeeeCHHHHHHHHhcCcc----ccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcc
Q 017849 207 LMDAHMYAFNRSVLQEVLDQKDK----FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF 282 (365)
Q Consensus 207 l~~~giyi~s~~vl~~~~~~~~~----~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (365)
++++|+|+|++++|. +++.... ...+ .|+++.++++
T Consensus 212 ~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l-~d~i~~l~~~-------------------------------------- 251 (302)
T PRK13389 212 LAIVGRYVLSADIWP-LLAKTPPGAGDEIQL-TDAIDMLIEK-------------------------------------- 251 (302)
T ss_pred EEEEEEEEECHHHHH-HHHhCCCCCCCeeeH-HHHHHHHHHc--------------------------------------
Confidence 899999999999995 4444221 0112 3555555432
Q ss_pred cccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHH
Q 017849 283 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (365)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~ 329 (365)
.++++|.+ +|||..|+++..|.+++++.
T Consensus 252 -----------------~~v~~~~~--~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 252 -----------------ETVEAYHM--KGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred -----------------CCEEEEEe--eeEEEeCCCHHHHHHHHHHH
Confidence 24688888 78999999999999999986
No 33
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.97 E-value=4.2e-30 Score=229.25 Aligned_cols=216 Identities=16% Similarity=0.261 Sum_probs=167.1
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE-
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA- 82 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~- 82 (365)
+|||||||.|+||+|| |..+||||+|++|+|||+|+|++|.++|+++|+|++++. .+.+.+|+.+. .+++.+.
T Consensus 1 kaiIlaaG~g~Rl~pl-t~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~---~~~~~i~~ 74 (221)
T cd06422 1 KAMILAAGLGTRMRPL-TDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHL--ADQIEAHLGDS---RFGLRITI 74 (221)
T ss_pred CEEEEcCCCCCccccc-cCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCC--HHHHHHHHhcc---cCCceEEE
Confidence 5899999999999999 999999999999999999999999999999999999865 35888888751 2334443
Q ss_pred -EcC-CCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHH--hcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849 83 -TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHR--RHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (365)
Q Consensus 83 -~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~--~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (365)
.+. +..|++++++.+++++.+++|++++||++++.++.++++.|. +.++.+|+.....+
T Consensus 75 ~~~~~~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 137 (221)
T cd06422 75 SDEPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP----------------- 137 (221)
T ss_pred ecCCCcccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC-----------------
Confidence 333 468999999999998866789999999999999999999998 45666776654322
Q ss_pred CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccchh
Q 017849 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238 (365)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d~l 238 (365)
....|+++.+|+++++ ..+. +++ ..+++++|+|+|++++|..+.+. ..++ .|++
T Consensus 138 ~~~~~g~v~~d~~~~v-~~~~-----~~~----------------~~~~~~~Giyi~~~~~l~~l~~~---~~~~-~d~~ 191 (221)
T cd06422 138 GHNGVGDFSLDADGRL-RRGG-----GGA----------------VAPFTFTGIQILSPELFAGIPPG---KFSL-NPLW 191 (221)
T ss_pred CCCCcceEEECCCCcE-eecc-----cCC----------------CCceEEEEEEEEcHHHHhhCCcC---cccH-HHHH
Confidence 2456788889887754 4543 222 12688999999999999766432 1122 3667
Q ss_pred hHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCC
Q 017849 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS 318 (365)
Q Consensus 239 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~ 318 (365)
+.++++. ++++|.+ +|||..|+|
T Consensus 192 ~~l~~~~-------------------------------------------------------~~~~~~~--~g~w~di~t 214 (221)
T cd06422 192 DRAIAAG-------------------------------------------------------RLFGLVY--DGLWFDVGT 214 (221)
T ss_pred HHHHHcC-------------------------------------------------------CeEEEec--CCEEEcCCC
Confidence 7665431 3477776 789999999
Q ss_pred HHHHHHH
Q 017849 319 IQAFMDI 325 (365)
Q Consensus 319 ~~~Y~~~ 325 (365)
+.+|.++
T Consensus 215 ~~~~~~a 221 (221)
T cd06422 215 PERLLAA 221 (221)
T ss_pred HHHHhhC
Confidence 9999874
No 34
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.97 E-value=1.5e-28 Score=219.07 Aligned_cols=222 Identities=27% Similarity=0.451 Sum_probs=170.9
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~ 84 (365)
|||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++|+|++++.. +.+.+++.....-...+.+...
T Consensus 1 aiIlaaG~g~R~~~~-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~--~~i~~~~~~~~~~~~~~~~~~~ 77 (223)
T cd06915 1 AVILAGGLGTRLRSV-VKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLA--EQIEEYFGDGYRGGIRIYYVIE 77 (223)
T ss_pred CEEecCCcccccCcc-cCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCH--HHHHHHHcCccccCceEEEEEC
Confidence 699999999999999 9999999999999999999999999999999999998653 4677777642100122334444
Q ss_pred CCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcce
Q 017849 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (365)
Q Consensus 85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (365)
....|++++++.+++.+..++|++++||++++.++.++++.|++.++++++++.+.+ .+..++
T Consensus 78 ~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 140 (223)
T cd06915 78 PEPLGTGGAIKNALPKLPEDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVP-----------------DASRYG 140 (223)
T ss_pred CCCCcchHHHHHHHhhcCCCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECC-----------------CCCcce
Confidence 567999999999999886678999999998899999999999888888888776532 134678
Q ss_pred EEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccchhhHHHHh
Q 017849 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS 244 (365)
Q Consensus 165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d~lp~l~~~ 244 (365)
++.+|++++ +..+.+ ++. ...+.++++|+|+|++++|..+... . .++..++++.++++
T Consensus 141 ~v~~d~~~~-v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~l~~~~~~--~-~~~~~~~~~~l~~~ 198 (223)
T cd06915 141 NVTVDGDGR-VIAFVE-----KGP-------------GAAPGLINGGVYLLRKEILAEIPAD--A-FSLEADVLPALVKR 198 (223)
T ss_pred eEEECCCCe-EEEEEe-----CCC-------------CCCCCcEEEEEEEECHHHHhhCCcc--C-CChHHHHHHHHHhc
Confidence 888888765 456652 221 1135788999999999999765322 1 23445677665533
Q ss_pred hhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHH
Q 017849 245 QLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMD 324 (365)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~ 324 (365)
+ ++++|++ +|+|..|+|+..|++
T Consensus 199 ~-------------------------------------------------------~v~~~~~--~~~~~dI~t~~dl~~ 221 (223)
T cd06915 199 G-------------------------------------------------------RLYGFEV--DGYFIDIGIPEDYAR 221 (223)
T ss_pred C-------------------------------------------------------cEEEEec--CCeEEecCCHHHHHh
Confidence 1 4688888 689999999999998
Q ss_pred H
Q 017849 325 I 325 (365)
Q Consensus 325 ~ 325 (365)
+
T Consensus 222 a 222 (223)
T cd06915 222 A 222 (223)
T ss_pred h
Confidence 7
No 35
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.97 E-value=1.6e-28 Score=218.12 Aligned_cols=198 Identities=29% Similarity=0.495 Sum_probs=152.7
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~ 84 (365)
|||||||.|+||+|+ |..+||+|+|++|+|||+|++++|.++|+++|+|++++. .+.+.+++.+.......+.++.+
T Consensus 1 aiIlaaG~g~R~~~~-t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~--~~~i~~~~~~~~~~~~~i~~~~~ 77 (217)
T cd04181 1 AVILAAGKGTRLRPL-TDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYL--GEQIEEYFGDGSKFGVNIEYVVQ 77 (217)
T ss_pred CEEecCCcccccccc-ccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHcChhhcCceEEEEeC
Confidence 699999999999999 999999999999999999999999999999999999865 35778887652111123555555
Q ss_pred CCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcce
Q 017849 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (365)
Q Consensus 85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (365)
+...|++++++.+++++..++|++++||++++.++..+++.|+++++++|+++.+.+ .+..|+
T Consensus 78 ~~~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 140 (217)
T cd04181 78 EEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE-----------------DPSRYG 140 (217)
T ss_pred CCCCccHHHHHHhhhhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC-----------------CCCcce
Confidence 567899999999999886678999999999999999999999999999998876542 255789
Q ss_pred EEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcc-ccccccchhhHHH
Q 017849 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK-FQSLKQDVLPYLV 242 (365)
Q Consensus 165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~-~~s~~~d~lp~l~ 242 (365)
++.+|++++ +..+.+ ++. .....++++|+|+|++++|+ ++++... ..++-.++++.++
T Consensus 141 ~v~~d~~~~-v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~l~ 199 (217)
T cd04181 141 VVELDDDGR-VTRFVE-----KPT-------------LPESNLANAGIYIFEPEILD-YIPEILPRGEDELTDAIPLLI 199 (217)
T ss_pred EEEEcCCCc-EEEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHH-hhhhcCCcccccHHHHHHHHH
Confidence 999998765 456653 321 01247899999999999985 4454321 1223345555544
No 36
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=1.7e-28 Score=241.91 Aligned_cols=232 Identities=19% Similarity=0.311 Sum_probs=172.6
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i 81 (365)
++.|||||||.|+|| ...+||+|+|++|+|||+|+|++|.++|++++++++++. .+.+.+++.+. ..+.+
T Consensus 3 ~~~avIlAaG~g~Rl----~~~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~--~~~i~~~~~~~----~~i~~ 72 (459)
T PRK14355 3 NLAAIILAAGKGTRM----KSDLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQ--AEKVREHFAGD----GDVSF 72 (459)
T ss_pred cceEEEEcCCCCccc----CCCCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCC--HHHHHHHhccC----CceEE
Confidence 378999999999999 457899999999999999999999999999999999866 34677777541 24556
Q ss_pred EEcCCCCChHHHHHHHHHHcCC--CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849 82 ATVPEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (365)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~ 157 (365)
+.++...|++++++.+++++.+ ++|++++||. +.+.+++.+++.|++.+++++++..+..
T Consensus 73 ~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~---------------- 136 (459)
T PRK14355 73 ALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE---------------- 136 (459)
T ss_pred EecCCCCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC----------------
Confidence 6667779999999999998853 6799999996 5678899999999888888888765432
Q ss_pred CCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCc-----cccc
Q 017849 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-----KFQS 232 (365)
Q Consensus 158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~-----~~~s 232 (365)
.+..|+.+.+|+++++ ..+.+ |+..-+. ...++++++|+|+|++++|.+.++... ...+
T Consensus 137 -~~~~~g~v~~d~~g~v-~~~~e-----k~~~~~~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~ 200 (459)
T PRK14355 137 -NPFGYGRIVRDADGRV-LRIVE-----EKDATPE---------ERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYY 200 (459)
T ss_pred -CCCcCCEEEEcCCCCE-EEEEE-----cCCCChh---------HhhccEEEEEEEEEeHHHHHHHHHHcCccccCCcee
Confidence 2456888888887764 56653 2110000 112468899999999997656554321 1111
Q ss_pred cccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCce
Q 017849 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY 312 (365)
Q Consensus 233 ~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 312 (365)
+ .|+++.|++++ .++++|.+ ++|
T Consensus 201 ~-~d~i~~l~~~g------------------------------------------------------~~v~~~~~--~~~ 223 (459)
T PRK14355 201 L-TDIVAMAAAEG------------------------------------------------------LRCLAFPV--ADP 223 (459)
T ss_pred H-HHHHHHHHHCC------------------------------------------------------CeEEEEEc--CCH
Confidence 2 35555555332 46788888 566
Q ss_pred --EEEeCCHHHHHHHhHHHhhh
Q 017849 313 --CVRLNSIQAFMDINRDVIGE 332 (365)
Q Consensus 313 --~~ri~~~~~Y~~~n~~~l~~ 332 (365)
|..++|+.+|+++++.++..
T Consensus 224 ~~~~~i~~~~~~~~a~~~l~~~ 245 (459)
T PRK14355 224 DEIMGVNDRAQLAEAARVLRRR 245 (459)
T ss_pred HHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999998866653
No 37
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.97 E-value=1.9e-28 Score=218.26 Aligned_cols=220 Identities=21% Similarity=0.409 Sum_probs=167.6
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~ 84 (365)
|||||||.|+||+|+ |..+||+|+|++|+|||+|+|++|..+|+++|+|++++. .+.+.+|+.....-...+.++.+
T Consensus 1 ~vIlaaG~g~R~~pl-t~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~~~~~~~~i~~~~~ 77 (220)
T cd06426 1 VVIMAGGKGTRLRPL-TENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYL--AEMIEDYFGDGSKFGVNISYVRE 77 (220)
T ss_pred CEEecCCCccccCcc-cCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccC--HHHHHHHHCCccccCccEEEEEC
Confidence 689999999999999 999999999999999999999999999999999999865 34677777642100123444444
Q ss_pred CCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcce
Q 017849 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (365)
Q Consensus 85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (365)
+...|+++++..+.+.. .++|+|++||++++.++..+++.|+..++++++++.... ....|+
T Consensus 78 ~~~~g~~~~l~~~~~~~-~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~g 139 (220)
T cd06426 78 DKPLGTAGALSLLPEKP-TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE-----------------VQVPYG 139 (220)
T ss_pred CCCCcchHHHHHHHhhC-CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC-----------------CCCcce
Confidence 56789999998777655 578999999999999999999999988888888775432 134578
Q ss_pred EEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccchhhHHHHh
Q 017849 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS 244 (365)
Q Consensus 165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d~lp~l~~~ 244 (365)
++..|+ ++ +..+. +++. .+.++++|+|+|+++++..+ .+.. +.++ .++++.+++.
T Consensus 140 ~~~~d~-~~-v~~~~-----ek~~---------------~~~~~~~Giy~~~~~~~~~i-~~~~-~~~l-~~~~~~~i~~ 194 (220)
T cd06426 140 VVETEG-GR-ITSIE-----EKPT---------------HSFLVNAGIYVLEPEVLDLI-PKNE-FFDM-PDLIEKLIKE 194 (220)
T ss_pred EEEECC-CE-EEEEE-----ECCC---------------CCCeEEEEEEEEcHHHHhhc-CCCC-CcCH-HHHHHHHHHC
Confidence 888886 54 45665 2321 23678999999999998755 3322 2222 3566655543
Q ss_pred hhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHH
Q 017849 245 QLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMD 324 (365)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~ 324 (365)
+ .++++|.+ +|+|..|+|+.+|.+
T Consensus 195 ~------------------------------------------------------~~i~~~~~--~~~w~~igt~~dl~~ 218 (220)
T cd06426 195 G------------------------------------------------------KKVGVFPI--HEYWLDIGRPEDYEK 218 (220)
T ss_pred C------------------------------------------------------CcEEEEEe--CCeEEeCCCHHHHHh
Confidence 2 34688888 689999999999999
Q ss_pred Hh
Q 017849 325 IN 326 (365)
Q Consensus 325 ~n 326 (365)
+|
T Consensus 219 a~ 220 (220)
T cd06426 219 AN 220 (220)
T ss_pred hC
Confidence 86
No 38
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=7.9e-29 Score=244.82 Aligned_cols=232 Identities=20% Similarity=0.263 Sum_probs=171.4
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|+|+|||||||+|+||++ .+||+|+|++|||||+|+|++|..+|+++|+|++++. .+.+.+++.. .++.
T Consensus 6 ~~~~avILAaG~gtRl~~----~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~--~~~i~~~~~~-----~~i~ 74 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS----ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHG--AEQVEAALQG-----SGVA 74 (481)
T ss_pred CCceEEEECCCCCCcCCC----CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhcc-----CCcE
Confidence 678999999999999954 5799999999999999999999999999999999875 3467777642 3567
Q ss_pred EEEcCCCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849 81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (365)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (365)
++.++.+.|++++++.+++++. +++|++++||+ +.+.+++.+++.|++.++++|+++...+
T Consensus 75 ~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~--------------- 139 (481)
T PRK14358 75 FARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP--------------- 139 (481)
T ss_pred EecCCCcCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC---------------
Confidence 7766677899999999988874 35699999995 6678899999999999999998876543
Q ss_pred CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHH---HHHHHhcCc-cccc
Q 017849 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSV---LQEVLDQKD-KFQS 232 (365)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~v---l~~~~~~~~-~~~s 232 (365)
++..||++.+|++++ +..+.++++.... ....+++++|+|+|++++ +..+..... +..+
T Consensus 140 --~~~~yG~v~~d~~g~-v~~~~Ek~~~~~~--------------~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~ 202 (481)
T PRK14358 140 --DATGYGRIVRGADGA-VERIVEQKDATDA--------------EKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYY 202 (481)
T ss_pred --CCCCceEEEECCCCC-EEEEEECCCCChh--------------HhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEE
Confidence 245699999998776 4566643211000 012356899999999665 332211111 1122
Q ss_pred cccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCce
Q 017849 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY 312 (365)
Q Consensus 233 ~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 312 (365)
+ .|+++.++++. .++++|.+ ++|
T Consensus 203 l-~d~i~~~~~~g------------------------------------------------------~~i~~~~~--~~~ 225 (481)
T PRK14358 203 L-TDLLGLYRAGG------------------------------------------------------AQVRAFKL--SDP 225 (481)
T ss_pred H-HHHHHHHHHCC------------------------------------------------------CeEEEEec--CCH
Confidence 3 36666655432 35677877 679
Q ss_pred EEEeCCHHHHHHHhHH-Hhhh
Q 017849 313 CVRLNSIQAFMDINRD-VIGE 332 (365)
Q Consensus 313 ~~ri~~~~~Y~~~n~~-~l~~ 332 (365)
+.-++....|+.++++ +|+.
T Consensus 226 ~~~i~~~~~~~l~~~~~~l~~ 246 (481)
T PRK14358 226 DEVLGANDRAGLAQLEATLRR 246 (481)
T ss_pred HHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999986 6653
No 39
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=3e-27 Score=218.19 Aligned_cols=202 Identities=26% Similarity=0.374 Sum_probs=164.7
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|.+.+||||+|+|||| ....||-|.|++||||++|+++.+...+.+++++|+++. ++.+++.+.+. .++.
T Consensus 1 ~~~~~vILAAGkGTRM----kS~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~--ae~V~~~~~~~----~~v~ 70 (460)
T COG1207 1 MSLSAVILAAGKGTRM----KSDLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHG--AEQVREALAER----DDVE 70 (460)
T ss_pred CCceEEEEecCCCccc----cCCCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCC--HHHHHHHhccc----cCce
Confidence 7789999999999999 788999999999999999999999999999999999976 45777776542 2588
Q ss_pred EEEcCCCCChHHHHHHHHHHcC-C--CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCcc
Q 017849 81 VATVPEDVGTAGALRAIAHHLT-A--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD 155 (365)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~-~--~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~ 155 (365)
++.|.+++||++|+.++++++. . +++||++|| +++...++.+++.|...++.+|+++...+
T Consensus 71 ~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~-------------- 136 (460)
T COG1207 71 FVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELD-------------- 136 (460)
T ss_pred EEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcC--------------
Confidence 9999999999999999999983 2 469999999 68888899999999999999999987654
Q ss_pred CCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcccccccc
Q 017849 156 KTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ 235 (365)
Q Consensus 156 ~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~ 235 (365)
+|..||.+..+++|.+ ..+.|. |+.+-. +-.-..+++|+|+|....|..++..-.+-..-.+
T Consensus 137 ---dP~GYGRIvr~~~g~V-~~IVE~----KDA~~e----------ek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgE 198 (460)
T COG1207 137 ---DPTGYGRIVRDGNGEV-TAIVEE----KDASEE----------EKQIKEINTGIYAFDGAALLRALPKLSNNNAQGE 198 (460)
T ss_pred ---CCCCcceEEEcCCCcE-EEEEEc----CCCCHH----------HhcCcEEeeeEEEEcHHHHHHHHHHhccccccCc
Confidence 3789999999988764 677652 322111 0112578999999999988888876544455567
Q ss_pred chhhHHHHh
Q 017849 236 DVLPYLVRS 244 (365)
Q Consensus 236 d~lp~l~~~ 244 (365)
.+|+.++.-
T Consensus 199 YYLTDvI~i 207 (460)
T COG1207 199 YYLTDVIAI 207 (460)
T ss_pred EeHHHHHHH
Confidence 888887755
No 40
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=6.2e-27 Score=231.98 Aligned_cols=234 Identities=23% Similarity=0.297 Sum_probs=169.8
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i 81 (365)
.+.|||||||.|+||+| .+||+|+|++|||||+|+|++|.++|+++++|++++.. +.+.+++... ...+.+
T Consensus 4 ~~~avILAaG~gtRm~~----~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~---~~~~~~ 74 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRS----DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDR--ERVAPAVAEL---APEVDI 74 (482)
T ss_pred CceEEEEcCCCCCcCCC----CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCH--HHHHHHhhcc---CCccEE
Confidence 35799999999999953 58999999999999999999999999999999998653 4677776542 123455
Q ss_pred EEcCCCCChHHHHHHHHHHcCC---CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849 82 ATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (365)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~i~~---~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (365)
+.++...|++++++.+++++.. ++|++++||. +...++..+++.|++.+++++++.....
T Consensus 75 ~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~--------------- 139 (482)
T PRK14352 75 AVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD--------------- 139 (482)
T ss_pred EeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC---------------
Confidence 5666778999999999988753 5699999995 5567899999999888888877654332
Q ss_pred CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcc-----cc
Q 017849 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK-----FQ 231 (365)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~-----~~ 231 (365)
.+..|+.+..+++++ +..+.++++... . +...+++++|+|+|++++|..++++... ..
T Consensus 140 --~p~~yg~~~~~~~g~-V~~~~EKp~~~~-----~---------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~ 202 (482)
T PRK14352 140 --DPTGYGRILRDQDGE-VTAIVEQKDATP-----S---------QRAIREVNSGVYAFDAAVLRSALARLSSDNAQGEL 202 (482)
T ss_pred --CCCCCCEEEECCCCC-EEEEEECCCCCH-----H---------HhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence 255788888887776 456664322100 0 1123578999999999999776543211 11
Q ss_pred ccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCc
Q 017849 232 SLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK 311 (365)
Q Consensus 232 s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
.+ .|+++.+++.+ .++++|.+ +|
T Consensus 203 ~l-~d~i~~l~~~g------------------------------------------------------~~V~~~~~--~g 225 (482)
T PRK14352 203 YL-TDVLAIAREAG------------------------------------------------------HRVGAHHA--DD 225 (482)
T ss_pred eH-HHHHHHHHHCC------------------------------------------------------CeEEEEec--CC
Confidence 11 35555554332 35688877 78
Q ss_pred eEEEeCCHHHH------HHHhHHHhhhh
Q 017849 312 YCVRLNSIQAF------MDINRDVIGEA 333 (365)
Q Consensus 312 y~~ri~~~~~Y------~~~n~~~l~~~ 333 (365)
||..+.....| ..+|+++|+.+
T Consensus 226 ~w~~~g~~~~~~~~~a~~~~~~~~~~~~ 253 (482)
T PRK14352 226 SAEVAGVNDRVQLAALGAELNRRIVEAW 253 (482)
T ss_pred cceEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999877666 66788888764
No 41
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=1.6e-26 Score=227.68 Aligned_cols=197 Identities=16% Similarity=0.257 Sum_probs=141.7
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|.|.|||||||.|+||+ ..+||+|+|++|||||+|++++|..+|++++++++++. .+.+.+++.. ..+.
T Consensus 4 ~~~~aiIlAaG~gtRl~----~~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~--~~~i~~~~~~-----~~~~ 72 (456)
T PRK09451 4 SAMSVVILAAGKGTRMY----SDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHG--GDLLKQTLAD-----EPLN 72 (456)
T ss_pred CCceEEEEcCCCCCcCC----CCCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhhcc-----CCcE
Confidence 46899999999999995 46899999999999999999999999999999999865 3467776642 2456
Q ss_pred EEEcCCCCChHHHHHHHHHHcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849 81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (365)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~ 157 (365)
++.++...|++++++.+++++. .++|++++||. +.+.++..+++.|++.+ +++++.+.+
T Consensus 73 ~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~---------------- 134 (456)
T PRK09451 73 WVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLD---------------- 134 (456)
T ss_pred EEECCCCCCcHHHHHHHHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcC----------------
Confidence 6666777999999999988875 35799999996 66788999998886544 334443321
Q ss_pred CCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcc-----ccc
Q 017849 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK-----FQS 232 (365)
Q Consensus 158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~-----~~s 232 (365)
++..|+++.. ++++ +..+.+++..... ...++++++|+|+|++++|.+++++... ...
T Consensus 135 -~~~~yG~v~~-~~g~-V~~~~EKp~~~~~--------------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~ 197 (456)
T PRK09451 135 -NPTGYGRITR-ENGK-VVGIVEQKDATDE--------------QRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYY 197 (456)
T ss_pred -CCCCceEEEe-cCCe-EEEEEECCCCChH--------------HhhccEEEEEEEEEEHHHHHHHHHhcCCccccCcee
Confidence 2456888744 4554 5677643321000 1124678999999999999776654221 112
Q ss_pred cccchhhHHHHh
Q 017849 233 LKQDVLPYLVRS 244 (365)
Q Consensus 233 ~~~d~lp~l~~~ 244 (365)
+ .|+++.++++
T Consensus 198 l-~d~i~~~i~~ 208 (456)
T PRK09451 198 I-TDIIALAHQE 208 (456)
T ss_pred H-HHHHHHHHHC
Confidence 2 3666666544
No 42
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=1.4e-25 Score=220.60 Aligned_cols=176 Identities=22% Similarity=0.399 Sum_probs=134.2
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
|+|||||||.|+|| ...+||+|+|++|||||+|+|++|.+.+ ++++|++++.. +.+.+++.. ++.++
T Consensus 1 m~avIlA~G~gtRl----~~~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~--~~i~~~~~~------~~~~~ 67 (448)
T PRK14357 1 MRALVLAAGKGTRM----KSKIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEA--ELVKKLLPE------WVKIF 67 (448)
T ss_pred CeEEEECCCCCccC----CCCCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCH--HHHHHhccc------ccEEE
Confidence 57999999999999 4578999999999999999999999875 88999988653 466666542 34555
Q ss_pred EcCCCCChHHHHHHHHHHcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCC
Q 017849 83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (365)
.++...|++++++.+++++. .++|++++||. +.+.++..+++.|+++++++|+++.+.. .
T Consensus 68 ~~~~~~g~~~ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~-----------------~ 130 (448)
T PRK14357 68 LQEEQLGTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE-----------------D 130 (448)
T ss_pred ecCCCCChHHHHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC-----------------C
Confidence 56677899999999999885 46799999995 6678899999999988999998876543 2
Q ss_pred CCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (365)
Q Consensus 160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~ 225 (365)
+..|+++.++ +++ + .+.+ ++. .+.. ....+++++|+|+|++++|.++++
T Consensus 131 ~~~~g~v~~d-~g~-v-~~~e-----~~~-~~~~--------~~~~~~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 131 PTGYGRIIRD-GGK-Y-RIVE-----DKD-APEE--------EKKIKEINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred CCCcEEEEEc-CCe-E-EEEE-----CCC-CChH--------HhcCcEEEeEEEEEEHHHHHHHHH
Confidence 5578888777 454 3 3332 211 0000 011357899999999999877654
No 43
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.94 E-value=7.2e-25 Score=196.77 Aligned_cols=178 Identities=18% Similarity=0.252 Sum_probs=132.8
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc-CCcceEEE-
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DRLHVEVA- 82 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~~~v~i~- 82 (365)
+||||||.|+||+|+ |..+||||+|++|+|||+|+|++|..+|+++++|+++... ...+++...+. ...++.+.
T Consensus 1 ~iIlAaG~g~Rl~pl-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~---~~~~~~~~~~~~~~~~~~i~~ 76 (231)
T cd04183 1 IIIPMAGLGSRFKKA-GYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEH---NTKFHLDESLKLLAPNATVVE 76 (231)
T ss_pred CEEECCcCCcccccc-CCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHH---hhhhhHHHHHHHhCCCCEEEE
Confidence 489999999999999 9999999999999999999999999999999999986331 11222222110 11233333
Q ss_pred EcCCCCChHHHHHHHHHHcC-CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCC
Q 017849 83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG 161 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (365)
.+....|+++++..++..+. +++|++++||++++.++..++..|.+.+++.++++.... ..
T Consensus 77 ~~~~~~g~~~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~ 138 (231)
T cd04183 77 LDGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS------------------HP 138 (231)
T ss_pred eCCCCCcHHHHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC------------------CC
Confidence 34567999999999998885 478999999999999999999988877777776654321 34
Q ss_pred cceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHH-HHHHHHh
Q 017849 162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS-VLQEVLD 225 (365)
Q Consensus 162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~-vl~~~~~ 225 (365)
.|+++.+|+++++ ..+.+ |+ ..+.++++|+|+|+++ .|...++
T Consensus 139 ~~~~v~~d~~~~v-~~~~e-----k~---------------~~~~~~~~Giy~~~~~~~~~~~l~ 182 (231)
T cd04183 139 RWSYVKLDENGRV-IETAE-----KE---------------PISDLATAGLYYFKSGSLFVEAAK 182 (231)
T ss_pred CeEEEEECCCCCE-EEeEE-----cC---------------CCCCccEeEEEEECcHHHHHHHHH
Confidence 6888999887764 45542 21 1246789999999997 5544443
No 44
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.94 E-value=9.2e-26 Score=198.15 Aligned_cols=129 Identities=22% Similarity=0.315 Sum_probs=106.9
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhh--hc-C--Ccc
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAA--YV-D--RLH 78 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~--~~-~--~~~ 78 (365)
|||||||.|+||+|+ |..+||+|+|++|+ |||+|+++++..+|+++++|++++.. +.+.+++.+. +. + ..+
T Consensus 1 avILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~--~~i~~~~~~~~~~~~~~~~~~ 77 (200)
T cd02508 1 AIILAGGEGTRLSPL-TKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKS--RSLNDHLGSGKEWDLDRKNGG 77 (200)
T ss_pred CEEeCCCCCcccchh-hcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCCh--HHHHHHHhCCCcccCCCCCCC
Confidence 699999999999999 99999999999999 99999999999999999999999763 5788888641 11 0 112
Q ss_pred eEEEE------cCCCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEE
Q 017849 79 VEVAT------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAM 136 (365)
Q Consensus 79 v~i~~------~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l 136 (365)
+.++. ++...||+++++.+.+++. .++|+|++||.+++.++.++++.|+++++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~ 144 (200)
T cd02508 78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVV 144 (200)
T ss_pred EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEE
Confidence 34443 2346999999999998874 3679999999999999999999998887777654
No 45
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.94 E-value=6.9e-25 Score=216.03 Aligned_cols=227 Identities=22% Similarity=0.313 Sum_probs=161.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
|+|||||||.|+||+| .+||+|+|++|+|||+|++++|.++|+++++|++++. .+.+.+++.++ ++.++
T Consensus 1 m~aiIlAaG~g~R~~~----~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~--~~~i~~~~~~~-----~i~~~ 69 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS----DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHG--AEQVRKALANR-----DVNWV 69 (451)
T ss_pred CeEEEEcCCCCcccCC----CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhcCC-----CcEEE
Confidence 5799999999999953 6899999999999999999999999999999999865 34677777642 45566
Q ss_pred EcCCCCChHHHHHHHHHHcCC-CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCC
Q 017849 83 TVPEDVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (365)
.++...|++++++.+++++.. ++|++++||. +.+.++..+++.|.+. .+++++...+ .
T Consensus 70 ~~~~~~G~~~ai~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~-----------------~ 130 (451)
T TIGR01173 70 LQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP-----------------D 130 (451)
T ss_pred EcCCCCchHHHHHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC-----------------C
Confidence 566678999999999998853 5799999996 5567899999988764 3555544321 2
Q ss_pred CCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccc-----cccc
Q 017849 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKF-----QSLK 234 (365)
Q Consensus 160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~-----~s~~ 234 (365)
+..|+.+..|+++++ ..+.+++... +. .....++++|+|+|++++|..++++.... .++
T Consensus 131 ~~~~g~v~~d~~g~v-~~~~ek~~~~-----~~---------~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~- 194 (451)
T TIGR01173 131 PTGYGRIIRENDGKV-TAIVEDKDAN-----AE---------QKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYL- 194 (451)
T ss_pred CCCCCEEEEcCCCCE-EEEEEcCCCC-----hH---------HhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeH-
Confidence 445788888877764 5555321110 00 01135788999999999976665542110 111
Q ss_pred cchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCce--
Q 017849 235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY-- 312 (365)
Q Consensus 235 ~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-- 312 (365)
.++++.+++++ .++++|.+ ++|
T Consensus 195 ~~~~~~l~~~g------------------------------------------------------~~v~~~~~--~~~~~ 218 (451)
T TIGR01173 195 TDVIALAVADG------------------------------------------------------ETVRAVQV--DDSDE 218 (451)
T ss_pred HHHHHHHHHCC------------------------------------------------------CeEEEEEc--CChhh
Confidence 25555544332 35678877 667
Q ss_pred EEEeCCHHHHHHHhHHHhh
Q 017849 313 CVRLNSIQAFMDINRDVIG 331 (365)
Q Consensus 313 ~~ri~~~~~Y~~~n~~~l~ 331 (365)
+..+.++..|.+++..+..
T Consensus 219 ~~~i~t~~dl~~~~~~l~~ 237 (451)
T TIGR01173 219 VLGVNDRLQLAQLERILQR 237 (451)
T ss_pred eecCCCHHHHHHHHHHHHH
Confidence 8889999998888765553
No 46
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=8e-25 Score=215.93 Aligned_cols=181 Identities=21% Similarity=0.352 Sum_probs=137.1
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|.++|||||||.|+|| ...+||+|+|++|||||+|+|++|.++|++++++++++.. +.+.+++.. .+.
T Consensus 1 m~~~avIlAaG~g~Rl----~~~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~--~~i~~~~~~------~~~ 68 (458)
T PRK14354 1 MNRYAIILAAGKGTRM----KSKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGA--EEVKEVLGD------RSE 68 (458)
T ss_pred CCceEEEEeCCCCccc----CCCCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCH--HHHHHHhcC------CcE
Confidence 8999999999999999 4578999999999999999999999999999999988653 466666643 244
Q ss_pred EEEcCCCCChHHHHHHHHHHcCC--CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849 81 VATVPEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (365)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (365)
++.++...|++++++.+++++.. ++++++.||. +.+.++..+++.|++.++++|+++...+
T Consensus 69 ~~~~~~~~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~--------------- 133 (458)
T PRK14354 69 FALQEEQLGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE--------------- 133 (458)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC---------------
Confidence 55556678999999999988853 5699999994 5677899999999888888887765432
Q ss_pred CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (365)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~ 225 (365)
.+..|+++..|+++++ ..+.+++. . ... .....++++|+|+|+++.|...++
T Consensus 134 --~~~~~g~v~~d~~~~V-~~~~ek~~----~--~~~--------~~~~~~~~~Giy~f~~~~l~~~l~ 185 (458)
T PRK14354 134 --NPTGYGRIIRNENGEV-EKIVEQKD----A--TEE--------EKQIKEINTGTYCFDNKALFEALK 185 (458)
T ss_pred --CCCCceEEEEcCCCCE-EEEEECCC----C--ChH--------HhcCcEEEEEEEEEEHHHHHHHHH
Confidence 2445788888877764 45543211 0 000 112367899999999986655544
No 47
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.94 E-value=3.9e-25 Score=198.29 Aligned_cols=176 Identities=19% Similarity=0.252 Sum_probs=131.4
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~ 84 (365)
|||||||.|+||+|+ |..+||+|+|++|+|||+|+|++|.++|+++|+|++++. .+.+.+|+++. .++.++..
T Consensus 1 aiIlAaG~g~Rl~~l-t~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~~~~~----~~~~~~~~ 73 (229)
T cd02523 1 AIILAAGRGSRLRPL-TEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYK--KEQIEELLKKY----PNIKFVYN 73 (229)
T ss_pred CEEEeccCccccchh-hCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccC--HHHHHHHHhcc----CCeEEEeC
Confidence 699999999999999 999999999999999999999999999999999999975 35788887642 35666665
Q ss_pred CC--CCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCc
Q 017849 85 PE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (365)
Q Consensus 85 ~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (365)
+. ..|+++++..+++++ .+++++++||++++. ++++.|.+.++++|+++.+... . ....
T Consensus 74 ~~~~~~g~~~s~~~~~~~~-~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~ 134 (229)
T cd02523 74 PDYAETNNIYSLYLARDFL-DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTK--E-------------WEDE 134 (229)
T ss_pred cchhhhCcHHHHHHHHHHc-CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcc--c-------------cccc
Confidence 43 589999999999988 578999999998754 5677888888888887765211 0 1223
Q ss_pred ceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (365)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~ 225 (365)
+++...|+ ++ +..+.+ ++.. .....++++|+|+|+++++..+.+
T Consensus 135 ~~~~~~~~-~~-v~~~~~-----k~~~------------~~~~~~~~~Giy~~~~~~~~~l~~ 178 (229)
T cd02523 135 YVKDLDDA-GV-LLGIIS-----KAKN------------LEEIQGEYVGISKFSPEDADRLAE 178 (229)
T ss_pred ceeeecCc-cc-eEeecc-----cCCC------------cchhceEEEeEEEECHHHHHHHHH
Confidence 44333332 33 334432 2210 012367899999999999876643
No 48
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=1.7e-24 Score=213.46 Aligned_cols=180 Identities=21% Similarity=0.279 Sum_probs=133.2
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
+.|||||||.|+|| ...+||+|+|++|+|||+|++++|...++++++|++++. .+.+.+++.. ..+.++
T Consensus 6 ~~aiILAaG~gtR~----~~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~-----~~~~~v 74 (456)
T PRK14356 6 TGALILAAGKGTRM----HSDKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHR--ADMVRAAFPD-----EDARFV 74 (456)
T ss_pred eeEEEEcCCCCccC----CCCCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhccc-----cCceEE
Confidence 67999999999999 567999999999999999999999999999999998865 3455555432 246677
Q ss_pred EcCCCCChHHHHHHHHHHcC---CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849 83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~ 157 (365)
.++...|++++++.+++++. .+++++++||+ +...++..+++.|+ +++++++....+
T Consensus 75 ~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~---------------- 136 (456)
T PRK14356 75 LQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP---------------- 136 (456)
T ss_pred EcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC----------------
Confidence 76777999999999988875 36799999996 55677899998875 566777665433
Q ss_pred CCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (365)
Q Consensus 158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~ 226 (365)
++..|+++.. ++|+ +..+.++++..... ....++++++|+|+|++++|..+++.
T Consensus 137 -~~~~~g~v~~-~~g~-V~~~~ek~~~~~~~------------~~~~~~~~~~GiY~f~~~~l~~ll~~ 190 (456)
T PRK14356 137 -DPGAYGRVVR-RNGH-VAAIVEAKDYDEAL------------HGPETGEVNAGIYYLRLDAVESLLPR 190 (456)
T ss_pred -CCCCceEEEE-cCCe-EEEEEECCCCChHH------------hhhhcCeEEEEEEEEEHHHHHHHHHh
Confidence 2456888766 4554 45665422110000 01234688999999999998766543
No 49
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=7.1e-24 Score=207.58 Aligned_cols=230 Identities=19% Similarity=0.293 Sum_probs=156.5
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|+++|||||||.|+||+ ..+||+|+|++|+|||+|+++.|..+ +++++|++++. .+.+.+++.+.+ .++.
T Consensus 1 m~~~aiIlAaG~GtRl~----~~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~--~~~i~~~~~~~~---~~v~ 70 (430)
T PRK14359 1 MKLSIIILAAGKGTRMK----SSLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQ--KERIKEAVLEYF---PGVI 70 (430)
T ss_pred CCccEEEEcCCCCccCC----CCCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCC--HHHHHHHHHhcC---CceE
Confidence 88999999999999995 47899999999999999999999887 78899998866 357888876532 2466
Q ss_pred EEEcCC--CCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849 81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (365)
Q Consensus 81 i~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (365)
++.++. ..|++++++.+.. ..++|++++||..+- ....++.+.+.++++++.+.+.+
T Consensus 71 ~~~~~~~~~~gt~~al~~~~~--~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~----------------- 129 (430)
T PRK14359 71 FHTQDLENYPGTGGALMGIEP--KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLA----------------- 129 (430)
T ss_pred EEEecCccCCCcHHHHhhccc--CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcC-----------------
Confidence 666543 4799999987432 257899999997331 22455556666777777765532
Q ss_pred CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcccc----ccc
Q 017849 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ----SLK 234 (365)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~----s~~ 234 (365)
++..|+.+..+ +++ +..+.+++...+. ....++.++|+|+|++++|..+........ ..-
T Consensus 130 ~~~~~g~v~~d-~g~-v~~i~e~~~~~~~--------------~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l 193 (430)
T PRK14359 130 DPKGYGRVVIE-NGQ-VKKIVEQKDANEE--------------ELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYL 193 (430)
T ss_pred CCccCcEEEEc-CCe-EEEEEECCCCCcc--------------cccceEEEeEEEEEEHHHHHHHHHhcCcccccCceeh
Confidence 24457777665 454 4566532211000 112467899999999999987754321110 011
Q ss_pred cchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEE
Q 017849 235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCV 314 (365)
Q Consensus 235 ~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 314 (365)
.|+++.+++. ..++++|..+ .+||.
T Consensus 194 ~d~i~~l~~~------------------------------------------------------g~~v~~~~~~-~~~w~ 218 (430)
T PRK14359 194 TDIIALAIEK------------------------------------------------------GETIKAVFVD-EENFM 218 (430)
T ss_pred hhHHHHHHHc------------------------------------------------------CCeEEEEEcC-CCEEe
Confidence 2444443322 1456778773 36999
Q ss_pred EeCCHHHHHHHhHHHhhh
Q 017849 315 RLNSIQAFMDINRDVIGE 332 (365)
Q Consensus 315 ri~~~~~Y~~~n~~~l~~ 332 (365)
.|+++..|.++++.+.++
T Consensus 219 dI~t~~dl~~a~~~l~~~ 236 (430)
T PRK14359 219 GVNSKFELAKAEEIMQER 236 (430)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998666543
No 50
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=6.5e-24 Score=186.34 Aligned_cols=237 Identities=14% Similarity=0.263 Sum_probs=175.0
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh--------
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-------- 73 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-------- 73 (365)
-.+|||+|+|.||||.|. |...||-|+||-+||+|+|+++.+..+|++++++|++...+ .+++|+...+
T Consensus 4 irKAViPaAGlGTRfLPA-TKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~--~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 4 IRKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKR--AIEDHFDTSYELENTLEK 80 (291)
T ss_pred ccEEEEEccCcccccccc-cccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcc--hHHHhCcCcHHHHHHHHH
Confidence 358999999999999999 99999999999999999999999999999999999996643 7777764211
Q ss_pred -------------cCCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEE
Q 017849 74 -------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMI 137 (365)
Q Consensus 74 -------------~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~ 137 (365)
.....+.++.|.+++|.++|+.+|..++.+++|.|+.+|.+... .+..|++.+.+.+..+..+
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v- 159 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGV- 159 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEE-
Confidence 11234667888999999999999999999999999999966543 4788999998888765443
Q ss_pred eeeccCCCccCCCCCCccCCCCCCcceEEEE----cCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceee
Q 017849 138 CSVPVSGLSEAGSSGAKDKTKKPGRYNIIGM----DPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMY 213 (365)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giy 213 (365)
.+++.+ +...||++.. +.+-..+..+.++|..+ +.+|++.-.|-|
T Consensus 160 ~ev~~e---------------~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~----------------~APSnlai~GRY 208 (291)
T COG1210 160 EEVPPE---------------DVSKYGVIDPGEPVEKGVYKVKGMVEKPKPE----------------EAPSNLAIVGRY 208 (291)
T ss_pred EECCHH---------------HCcccceEecCccccCCeEEEEEEEECCCCC----------------CCCcceeeeeee
Confidence 344321 3668999872 22212345565433211 356899999999
Q ss_pred eeCHHHHHHHHhcC-ccc-cccc-cchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCC
Q 017849 214 AFNRSVLQEVLDQK-DKF-QSLK-QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGP 290 (365)
Q Consensus 214 i~s~~vl~~~~~~~-~~~-~s~~-~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (365)
++++++|+.+ ++. .+. ..+. .|-+..|++.
T Consensus 209 il~p~IFd~L-~~~~~G~ggEiQLTDai~~L~~~---------------------------------------------- 241 (291)
T COG1210 209 VLTPEIFDIL-EETKPGAGGEIQLTDAIKKLLKK---------------------------------------------- 241 (291)
T ss_pred ecCHHHHHHH-hhCCCCCCCEeeHHHHHHHHHhh----------------------------------------------
Confidence 9999999755 442 111 1111 2333333322
Q ss_pred CCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 017849 291 NGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG 331 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~ 331 (365)
-.++||.+ +|=.-.+.+...|.++|.++.-
T Consensus 242 ---------~~v~a~~~--~GkryD~G~k~Gyi~a~v~~~l 271 (291)
T COG1210 242 ---------EPVLAYVF--EGKRYDCGSKLGYIKANVEFAL 271 (291)
T ss_pred ---------CcEEEEEe--cccEEccCCcccHHHHHHHHHh
Confidence 24688988 6777789999999999998854
No 51
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=3.7e-24 Score=210.76 Aligned_cols=182 Identities=24% Similarity=0.365 Sum_probs=140.2
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
+.+||||||.|+||+ ..+||+|+|++|||||+|+|++|.++|+.+++|++++.. +.+.+++... .++.++
T Consensus 2 ~~~iIlAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~----~~i~~v 71 (450)
T PRK14360 2 LAVAILAAGKGTRMK----SSLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQA--EEVEQSLAHL----PGLEFV 71 (450)
T ss_pred ceEEEEeCCCCccCC----CCCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCH--HHHHHHhccc----CCeEEE
Confidence 679999999999994 478999999999999999999999999999999998653 4677776531 246666
Q ss_pred EcCCCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849 83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (365)
.++...|++++++.+++++. ++++++++||. +.+.++..+++.|++.+++++++.....
T Consensus 72 ~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~----------------- 134 (450)
T PRK14360 72 EQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP----------------- 134 (450)
T ss_pred EeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC-----------------
Confidence 66667899999999988875 35799999996 6678899999999988888887655432
Q ss_pred CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (365)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~ 226 (365)
++..|+.+.+|+++++ ..+.+++... +. ...++++++|+|+|++++|.+++++
T Consensus 135 ~~~~~g~~~~d~~g~v-~~~~ek~~~~-----~~---------~~~~~~~~~Giy~f~~~~l~~~~~~ 187 (450)
T PRK14360 135 NPKGYGRVFCDGNNLV-EQIVEDRDCT-----PA---------QRQNNRINAGIYCFNWPALAEVLPK 187 (450)
T ss_pred CCCCccEEEECCCCCE-EEEEECCCCC-----hh---------HhcCcEEEEEEEEEEHHHHHHHHhh
Confidence 2456888888887764 5665322110 00 1235789999999999988877654
No 52
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=1.3e-23 Score=206.71 Aligned_cols=183 Identities=23% Similarity=0.272 Sum_probs=131.2
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|++.|||||||.|+||+ ..+||+|+|++|||||+|++++|..+|+++++|++++.. +.+.+++.... ..+.
T Consensus 4 ~~~~aiILAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~--~~i~~~~~~~~---~~~~ 74 (446)
T PRK14353 4 RTCLAIILAAGEGTRMK----SSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGA--EAVAAAAAKIA---PDAE 74 (446)
T ss_pred ccceEEEEcCCCCCccC----CCCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCH--HHHHHHhhccC---CCce
Confidence 45789999999999994 467999999999999999999999999999999998653 46777765421 1344
Q ss_pred EEEcCCCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849 81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (365)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (365)
++.++...|++++++.+++++. .++|++++||. +...++..+++.+ +.+++++++..+..
T Consensus 75 ~~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~--------------- 138 (446)
T PRK14353 75 IFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAA--------------- 138 (446)
T ss_pred EEEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeC---------------
Confidence 4555667899999999988874 46799999996 4456688888744 45677777655432
Q ss_pred CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (365)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~ 226 (365)
++..|+++.. ++++ +..+.+++..+. . .....+.++|+|+|+++.|..++++
T Consensus 139 --~~~~~g~~~~-~~g~-v~~~~ek~~~~~-----~---------~~~~~~~~~Giy~~~~~~l~~~l~~ 190 (446)
T PRK14353 139 --DPTGYGRLIV-KGGR-LVAIVEEKDASD-----E---------ERAITLCNSGVMAADGADALALLDR 190 (446)
T ss_pred --CCCcceEEEE-CCCe-EEEEEECCCCCh-----H---------HhhceEEEEEEEEEEHHHHHHHHHh
Confidence 2456777776 3454 456653221100 0 0113578899999999877666554
No 53
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.92 E-value=4.3e-24 Score=196.17 Aligned_cols=192 Identities=21% Similarity=0.235 Sum_probs=140.6
Q ss_pred ceEEEEcCCCCCCCCCCCCC-CCCceeceeCC-cchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 3 FQVVVLAGGTSKKLVPLVSK-EVPKALLPVAN-RPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~-~~pK~llpv~g-kplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
|++||||||.|+||+|| |. .+||+|+|++| +|||++++++|...+ +++|+|++++.+. +.+.+++... ..++
T Consensus 1 m~~vILAgG~GtRl~Pl-S~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~-~~v~~~l~~~---~~~~ 75 (274)
T cd02509 1 IYPVILAGGSGTRLWPL-SRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYR-FLVREQLPEG---LPEE 75 (274)
T ss_pred CEEEEEcccccccCCcC-CCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHH-HHHHHHHhhc---CCCc
Confidence 57999999999999999 75 79999999999 899999999999984 9999999986432 3455566431 1356
Q ss_pred EEEEcCCCCChHHHHHHHHHHcC----CCcEEEEeCCcccC--CChHHHHHHHHh---cCCeEEEEEeeeccCCCccCCC
Q 017849 80 EVATVPEDVGTAGALRAIAHHLT----AKDVLVVSGDLVSD--VPPGAVTAAHRR---HDAVVTAMICSVPVSGLSEAGS 150 (365)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~----~~~~lv~~~D~i~~--~~l~~~l~~h~~---~~a~~t~l~~~~~~~~~~~~~~ 150 (365)
.++.++...||++++..+...+. ++.++|++||+++. .++.++++.+.+ .++.+|+.+....
T Consensus 76 ~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~--------- 146 (274)
T cd02509 76 NIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTR--------- 146 (274)
T ss_pred eEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecC---------
Confidence 77777888999999998877664 35689999997765 456667765543 5777887765432
Q ss_pred CCCccCCCCCCcceEEEEcCCC-c---EEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849 151 SGAKDKTKKPGRYNIIGMDPTK-Q---FLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (365)
Q Consensus 151 ~~~~~~~~~~~~~~~v~~d~~~-~---~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~ 226 (365)
....||++..+++. . .+..+.++++.++. ...+. -...++++|+|+|++++|...+++
T Consensus 147 --------~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a----~~~~~------~g~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 147 --------PETGYGYIEAGEKLGGGVYRVKRFVEKPDLETA----KEYLE------SGNYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred --------CCCCeEEEEeCCcCCCCceEEeEEEECcChHHH----HHHhh------cCCeEEECceeeeeHHHHHHHHHH
Confidence 24689999998653 1 45677755443221 11111 123589999999999988777653
No 54
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.90 E-value=3e-22 Score=179.37 Aligned_cols=179 Identities=28% Similarity=0.410 Sum_probs=135.1
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~ 84 (365)
|||||||.|+||+ ..+||+|+|++|+|||+|++++|.++|+++|+|++++. .+.+.+++.. .++.++..
T Consensus 1 aiIlaaG~g~R~~----~~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~--~~~i~~~~~~-----~~~~~~~~ 69 (229)
T cd02540 1 AVILAAGKGTRMK----SDLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHG--AEQVKKALAN-----PNVEFVLQ 69 (229)
T ss_pred CEEEeCCCCccCC----CCCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhCC-----CCcEEEEC
Confidence 6999999999995 36899999999999999999999999999999999865 3467776653 35666666
Q ss_pred CCCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCC
Q 017849 85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP 160 (365)
Q Consensus 85 ~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
+...|++++++.++..+. .++|+++.||. +...++..+++.|.+.++++++...... .+
T Consensus 70 ~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-----------------~p 132 (229)
T cd02540 70 EEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE-----------------DP 132 (229)
T ss_pred CCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC-----------------CC
Confidence 667899999999998886 46799999996 5567899999999887777777655432 24
Q ss_pred CcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849 161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (365)
Q Consensus 161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~ 226 (365)
..|+.+..++++++ ..+.+++. .. +. .....++++|+|+|+++.|..+++.
T Consensus 133 ~~~~~~~~~~~~~v-~~~~ek~~----~~-~~---------~~~~~~~~~giy~~~~~~~~~~l~~ 183 (229)
T cd02540 133 TGYGRIIRDGNGKV-LRIVEEKD----AT-EE---------EKAIREVNAGIYAFDAEFLFEALPK 183 (229)
T ss_pred CCccEEEEcCCCCE-EEEEECCC----CC-hH---------HHhhceEEeEEEEEEHHHHHHHHHH
Confidence 56787777776764 45543111 10 00 0123678999999999877666654
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.87 E-value=4.2e-21 Score=188.52 Aligned_cols=192 Identities=20% Similarity=0.214 Sum_probs=133.5
Q ss_pred ceEEEEcCCCCCCCCCCCCCC-CCceeceeCC-cchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcc-e
Q 017849 3 FQVVVLAGGTSKKLVPLVSKE-VPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH-V 79 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~-~pK~llpv~g-kplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~-v 79 (365)
|.+||||||.||||+|| |.. +||+|+|++| +|||+++++.|...++++++|+++..+. ..+.+.+... ... .
T Consensus 1 ~~~vILAgG~GtRl~Pl-S~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~-~~~~~~l~~~---~~~~~ 75 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPL-SRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHR-FIVAEQLREI---GKLAS 75 (468)
T ss_pred CEEEEecCcccccCCcc-ccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHH-HHHHHHHHHc---CCCcc
Confidence 57999999999999999 665 8999999977 8999999999999999999999874432 2444455432 112 3
Q ss_pred EEEEcCCCCChHHHHHHHHHHc----CCC-cEEEEeCCcccC--CChHHHHHHH---HhcCCeEEEEEeeeccCCCccCC
Q 017849 80 EVATVPEDVGTAGALRAIAHHL----TAK-DVLVVSGDLVSD--VPPGAVTAAH---RRHDAVVTAMICSVPVSGLSEAG 149 (365)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i----~~~-~~lv~~~D~i~~--~~l~~~l~~h---~~~~a~~t~l~~~~~~~~~~~~~ 149 (365)
.++.++..+||+.++..+...+ ..+ .++|++||++.. .+|.++++.+ .+.++.+|+......
T Consensus 76 ~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~-------- 147 (468)
T TIGR01479 76 NIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTH-------- 147 (468)
T ss_pred eEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCC--------
Confidence 4777788899999988765555 323 489999996543 3478887764 344666666654321
Q ss_pred CCCCccCCCCCCcceEEEEcCC----C-cEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHH
Q 017849 150 SSGAKDKTKKPGRYNIIGMDPT----K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL 224 (365)
Q Consensus 150 ~~~~~~~~~~~~~~~~v~~d~~----~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~ 224 (365)
....||++..++. + ..+..+.|+++.+.. ...+ ...+.++|+|||+|++++|...+
T Consensus 148 ---------p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a----~~~l------~~g~~~wNsGif~~~~~~ll~~l 208 (468)
T TIGR01479 148 ---------PETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATA----QAYL------ESGDYYWNSGMFLFRASRYLAEL 208 (468)
T ss_pred ---------CCCCceEEEeCCccCCCCceEEeEEEECCChHHH----HHHH------hcCCeEEEeeEEEEEHHHHHHHH
Confidence 2468999998842 1 245677765443221 1111 11246899999999999887665
Q ss_pred hc
Q 017849 225 DQ 226 (365)
Q Consensus 225 ~~ 226 (365)
.+
T Consensus 209 ~~ 210 (468)
T TIGR01479 209 KK 210 (468)
T ss_pred HH
Confidence 43
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.85 E-value=1.1e-19 Score=164.67 Aligned_cols=186 Identities=18% Similarity=0.253 Sum_probs=124.6
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|++.+||||+|.|+|| . +|+|+|++|+|||+|+++.|..+|+++|+|++++ +.+.+++... ++.
T Consensus 1 m~~~~iIlA~g~S~R~----~---~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~----~~i~~~~~~~-----~~~ 64 (245)
T PRK05450 1 MKFLIIIPARYASTRL----P---GKPLADIGGKPMIVRVYERASKAGADRVVVATDD----ERIADAVEAF-----GGE 64 (245)
T ss_pred CceEEEEecCCCCCCC----C---CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc----HHHHHHHHHc-----CCE
Confidence 8899999999999999 3 5999999999999999999999999999998863 3566666432 344
Q ss_pred EEE--cCCCCChHHHHHHHHHHc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849 81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (365)
Q Consensus 81 i~~--~~~~~gt~~al~~~~~~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~ 153 (365)
++. ++...|++.... +...+ ..+.+++++||+ +....+..+++.|+..++++++++.... ++..
T Consensus 65 v~~~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~--~~~~------ 135 (245)
T PRK05450 65 VVMTSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIH--DAEE------ 135 (245)
T ss_pred EEECCCcCCCchHHHHH-HHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecC--CHHH------
Confidence 443 334567765443 33333 234588999996 5567899999998877666666554431 1111
Q ss_pred ccCCCCCCcceEEEEcCCCcEEEEeecccccc-ccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELE-KDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (365)
Q Consensus 154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~e-k~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~ 225 (365)
...++.++++ +|++|++ ..+.+++..+ +.. .+.-...+++.++|||+|++++|..+.+
T Consensus 136 ---~~~~~~~~v~-~d~~g~v-~~~~e~~~~~~~~~---------~~~~~~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 136 ---AFNPNVVKVV-LDADGRA-LYFSRAPIPYGRDA---------FADSAPTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred ---hcCcCCCEEE-eCCCCcE-EEecCCCCCCCCCc---------cccccCccccEEEEEEecCHHHHHHHHh
Confidence 1135566755 8877764 5665433111 000 0000123589999999999999987764
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.85 E-value=9.6e-20 Score=164.37 Aligned_cols=180 Identities=19% Similarity=0.241 Sum_probs=122.9
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i 81 (365)
+.|||||+|.|+|| . ||+|+|++|||||+|++++|..+ |+++|+|++++ +.+.+++..+ ++.+
T Consensus 2 ~~~iIlA~g~s~R~----~---~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~----~~i~~~~~~~-----~~~~ 65 (239)
T cd02517 2 VIVVIPARYASSRL----P---GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD----ERIADAVESF-----GGKV 65 (239)
T ss_pred EEEEEecCCCCCCC----C---CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHHHc-----CCEE
Confidence 57899999999999 3 69999999999999999999998 89999998863 3566666532 3445
Q ss_pred EEc--CCCCChHHHHHHHHHHcCC--CcEEEEeCCc--ccCCChHHHHHHHHhc-CCeEEEEEeeeccCCCccCCCCCCc
Q 017849 82 ATV--PEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSGAK 154 (365)
Q Consensus 82 ~~~--~~~~gt~~al~~~~~~i~~--~~~lv~~~D~--i~~~~l~~~l~~h~~~-~a~~t~l~~~~~~~~~~~~~~~~~~ 154 (365)
+.. ....|+++ +..+...+.. +.|++++||. +...++..+++.|... ++++++++...+ ++...
T Consensus 66 ~~~~~~~~~gt~~-~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~------ 136 (239)
T cd02517 66 VMTSPDHPSGTDR-IAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPIS--DEEEL------ 136 (239)
T ss_pred EEcCcccCchhHH-HHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcC--CHHHc------
Confidence 443 23567775 5556555653 5699999994 6677899999988766 677887765542 11100
Q ss_pred cCCCCCCcceEEEEcCCCcEEEEeeccc--cccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849 155 DKTKKPGRYNIIGMDPTKQFLLHIATGA--ELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (365)
Q Consensus 155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~--~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~ 225 (365)
.....++ |.+++++.+ ..+.+++ +.+++. ...+.++++|+|+|++++|..+..
T Consensus 137 ---~~~~~~~-v~~~~~~~v-~~~~~~~~~~~~~~~-------------~~~~~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 137 ---FNPNVVK-VVLDKDGYA-LYFSRSPIPYPRDSS-------------EDFPYYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred ---cCCCCCE-EEECCCCCE-EEecCCCCCCCCCCC-------------CCCceeEEEEEEEECHHHHHHHHh
Confidence 0122334 456766654 4554321 101100 112468999999999999987754
No 58
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.82 E-value=1.9e-18 Score=155.77 Aligned_cols=181 Identities=21% Similarity=0.291 Sum_probs=120.5
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
|++.|||||+|.|+|| . +|+|+|++|||||+|+++.+.++ ++++|+|++++ +.+.+++..+ ++
T Consensus 1 m~~~aiIlA~g~s~R~----~---~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~----~~i~~~~~~~-----~~ 64 (238)
T PRK13368 1 MKVVVVIPARYGSSRL----P---GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD----QRIEDAVEAF-----GG 64 (238)
T ss_pred CcEEEEEecCCCCCCC----C---CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh----HHHHHHHHHc-----CC
Confidence 7888999999999999 3 49999999999999999999998 79999999863 3566666542 33
Q ss_pred EEEEc--CCCCChHHHHHHHHHHcCCCcEEEEeCC--cccCCChHHHHHHHHhcCC-eEEEEEeeeccCCCccCCCCCCc
Q 017849 80 EVATV--PEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA-VVTAMICSVPVSGLSEAGSSGAK 154 (365)
Q Consensus 80 ~i~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a-~~t~l~~~~~~~~~~~~~~~~~~ 154 (365)
.++.. ....|++ .+..+...+..+.|+++.|| ++...++..+++.|...+. ++++++...+. +..
T Consensus 65 ~v~~~~~~~~~g~~-~~~~a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~------- 134 (238)
T PRK13368 65 KVVMTSDDHLSGTD-RLAEVMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPIST--EEE------- 134 (238)
T ss_pred eEEecCccCCCccH-HHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCC--HHH-------
Confidence 34433 2345666 46667666655679999999 5778889999999876543 55555543321 000
Q ss_pred cCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849 155 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV 223 (365)
Q Consensus 155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~ 223 (365)
...+..+++ .++++|++ ..+.+++ ++. +. .+ ...+.+.++|+|+|++++|..+
T Consensus 135 --~~~p~~~~~-~~~~~g~v-~~~~~~~---~~~--~~-----~~--~~~~~~~n~giy~~~~~~l~~~ 187 (238)
T PRK13368 135 --FESPNVVKV-VVDKNGDA-LYFSRSP---IPS--RR-----DG--ESARYLKHVGIYAFRRDVLQQF 187 (238)
T ss_pred --hcCcCCCEE-EECCCCCE-EEeeCCC---CCC--CC-----CC--CCCceeEEEEEEEeCHHHHHHH
Confidence 001333444 44555654 4554211 110 00 00 0113588999999999999865
No 59
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.1e-17 Score=150.50 Aligned_cols=193 Identities=24% Similarity=0.259 Sum_probs=132.2
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCC-cchHHHHHHHHHh-CCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~g-kplI~~~L~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|.+||||||.|||||||+...+||+++++.| +.|++.+++++.. .+.++++|+|+..+. ..+.+.+.+.......-
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~-f~v~eql~e~~~~~~~~- 79 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYR-FIVKEQLPEIDIENAAG- 79 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHH-HHHHHHHhhhhhccccc-
Confidence 6799999999999999988999999999955 8999999999987 668999999996543 34555555321111122
Q ss_pred EEEcCCCCChHHHHHHHHHHcCC----CcEEEEeCCcccCCC--hHHHHHHHH---hcCCeEEEEEeeeccCCCccCCCC
Q 017849 81 VATVPEDVGTAGALRAIAHHLTA----KDVLVVSGDLVSDVP--PGAVTAAHR---RHDAVVTAMICSVPVSGLSEAGSS 151 (365)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~~----~~~lv~~~D~i~~~~--l~~~l~~h~---~~~a~~t~l~~~~~~~~~~~~~~~ 151 (365)
++.++..+.|+.|+..+.-.+.. .-++|+++|++.... +.+.++... +.+..+|+...+..
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~---------- 149 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTR---------- 149 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCC----------
Confidence 77788889999998877443332 238999999765432 444444332 34566666543321
Q ss_pred CCccCCCCCCcceEEEEcC-----CCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHH
Q 017849 152 GAKDKTKKPGRYNIIGMDP-----TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL 224 (365)
Q Consensus 152 ~~~~~~~~~~~~~~v~~d~-----~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~ 224 (365)
..+.||++...+ ....+..|.|+|+.+.. ++.+. -...++|+|+|+|+..++.+-+
T Consensus 150 -------PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA----~~yv~------sG~y~WNSGmF~Fra~~~l~e~ 210 (333)
T COG0836 150 -------PETGYGYIETGESIAENGVYKVDRFVEKPDLETA----KKYVE------SGEYLWNSGMFLFRASVFLEEL 210 (333)
T ss_pred -------CccCcceeecCcccccCCceEeeeeeeCCCHHHH----HHHHH------cCceEeeccceEEEHHHHHHHH
Confidence 256899998755 24445667765554432 22222 1347999999999998875444
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.76 E-value=1.9e-17 Score=161.38 Aligned_cols=194 Identities=20% Similarity=0.191 Sum_probs=130.7
Q ss_pred CcceEEEEcCCCCCCCCCCCCCC-CCceeceeCC-cchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcc
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKE-VPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH 78 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~-~pK~llpv~g-kplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~ 78 (365)
|.|.+||||||.|+||+|+ +.. +||+|+|++| +|||+++++++...++.+.+|+++..+ ...+.+.+... . ...
T Consensus 4 ~~~~~vIlaGG~GtRlwPl-S~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~-~~~v~~ql~~~-~-~~~ 79 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPL-SRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQH-RFIVAEQLRQL-N-KLT 79 (478)
T ss_pred CceEEEEECCCCccccccC-CCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHH-HHHHHHHHHhc-C-Ccc
Confidence 6789999999999999999 655 7999999966 699999999999888888888888543 24555555431 1 012
Q ss_pred eEEEEcCCCCChHHHHHHHHHHcC------CCcEEEEeCCcccCC--ChHHHHHHHH---hcCCeEEEEEeeeccCCCcc
Q 017849 79 VEVATVPEDVGTAGALRAIAHHLT------AKDVLVVSGDLVSDV--PPGAVTAAHR---RHDAVVTAMICSVPVSGLSE 147 (365)
Q Consensus 79 v~i~~~~~~~gt~~al~~~~~~i~------~~~~lv~~~D~i~~~--~l~~~l~~h~---~~~a~~t~l~~~~~~~~~~~ 147 (365)
..++.++..++|+.|+..+...+. +.-++|+++|++... .|.+.++... +.+..+|+...+..
T Consensus 80 ~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~------ 153 (478)
T PRK15460 80 ENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDL------ 153 (478)
T ss_pred ccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCC------
Confidence 367788888999988876644432 234889999976543 2444444332 23666665543321
Q ss_pred CCCCCCccCCCCCCcceEEEEcCC-------C-cEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHH
Q 017849 148 AGSSGAKDKTKKPGRYNIIGMDPT-------K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSV 219 (365)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~v~~d~~-------~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~v 219 (365)
..+.||++..++. + ..+..|.|+|+.+.. ..++. -...++|+|||+|+.++
T Consensus 154 -----------PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA----~~yl~------~G~y~WNsGiF~~~a~~ 212 (478)
T PRK15460 154 -----------PETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETA----QAYVA------SGEYYWNSGMFLFRAGR 212 (478)
T ss_pred -----------CCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHH----HHHHH------cCCEEEecceeheeHHH
Confidence 2568999987653 1 245677765554332 22222 12368999999999988
Q ss_pred HHHHHh
Q 017849 220 LQEVLD 225 (365)
Q Consensus 220 l~~~~~ 225 (365)
|..-++
T Consensus 213 ~l~~~~ 218 (478)
T PRK15460 213 YLEELK 218 (478)
T ss_pred HHHHHH
Confidence 765544
No 61
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=1e-16 Score=138.62 Aligned_cols=113 Identities=22% Similarity=0.353 Sum_probs=89.7
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i 81 (365)
-|.|||||||.|+||.| +.||||+.++||++|+|++++|.++|++++++|+.... .+-+..++... ++...+
T Consensus 3 ~~kavILAAG~GsRlg~----~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~-~~lve~~l~~~---~~~~~i 74 (239)
T COG1213 3 PMKAVILAAGFGSRLGP----DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYR-ADLVEEFLKKY---PFNAKI 74 (239)
T ss_pred ceeEEEEecccccccCC----CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccch-HHHHHHHHhcC---CcceEE
Confidence 47899999999999954 79999999999999999999999999999999994222 45666666643 235667
Q ss_pred EEcCC--CCChHHHHHHHHHHcCCCcEEEEeCCcccCCCh-HHHH
Q 017849 82 ATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPP-GAVT 123 (365)
Q Consensus 82 ~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l-~~~l 123 (365)
+..+. ..+++.+|..+.+++. +.|+++.||+++...+ +.++
T Consensus 75 v~N~~y~ktN~~~Sl~~akd~~~-~~fii~~sD~vye~~~~e~l~ 118 (239)
T COG1213 75 VINSDYEKTNTGYSLLLAKDYMD-GRFILVMSDHVYEPSILERLL 118 (239)
T ss_pred EeCCCcccCCceeEEeeehhhhc-CcEEEEeCCEeecHHHHHHHH
Confidence 66544 3566899999999885 5699999999987653 4343
No 62
>PLN02917 CMP-KDO synthetase
Probab=99.69 E-value=4.9e-15 Score=136.98 Aligned_cols=200 Identities=13% Similarity=0.127 Sum_probs=124.5
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCC-CeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNI-KDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
|++.+||+|+|.|+|| . +|+|++++|+|||+|+++.+..++. +.|+|.+. .+.+.+++.. .++
T Consensus 46 ~~i~aIIpA~G~SsR~----~---~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~----~e~I~~~~~~-----~~v 109 (293)
T PLN02917 46 SRVVGIIPARFASSRF----E---GKPLVHILGKPMIQRTWERAKLATTLDHIVVATD----DERIAECCRG-----FGA 109 (293)
T ss_pred CcEEEEEecCCCCCCC----C---CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECC----hHHHHHHHHH-----cCC
Confidence 6778999999999999 4 3999999999999999999998764 44444332 2466666643 234
Q ss_pred EEEEc--CCCCChHHHHHHHHHHcC--CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849 80 EVATV--PEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (365)
Q Consensus 80 ~i~~~--~~~~gt~~al~~~~~~i~--~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~ 153 (365)
.++.. ....|++.+ ..+.+.+. .+.++++.|| ++....+..+++.+.+. ++++++..-.+. ++.
T Consensus 110 ~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~-~~~------- 179 (293)
T PLN02917 110 DVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSL-KPE------- 179 (293)
T ss_pred EEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeec-CHH-------
Confidence 45443 345677766 46767674 3569999999 67778899999988654 333332221111 111
Q ss_pred ccCCCCCCcceEEE--EcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcccc
Q 017849 154 KDKTKKPGRYNIIG--MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ 231 (365)
Q Consensus 154 ~~~~~~~~~~~~v~--~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~ 231 (365)
++..|+.+. .|++|+.+.+.......+++..-. ...-.+.++|||.|+++.|..+ .+-..-.
T Consensus 180 -----~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~----------~~~i~~~n~Giy~f~~~~L~~l-~~l~~~n 243 (293)
T PLN02917 180 -----DASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDAKFLKIY-PELPPTP 243 (293)
T ss_pred -----HhcCCCceEEEECCCCeEEEeecCcCCcCCCcccc----------cccceEEEEEEEEeCHHHHHHH-HcCCCCc
Confidence 255677774 677776553332211112221000 0112578999999999999844 4332222
Q ss_pred ccccchhhHHH
Q 017849 232 SLKQDVLPYLV 242 (365)
Q Consensus 232 s~~~d~lp~l~ 242 (365)
.-+++.|..|+
T Consensus 244 ~e~e~yLtdl~ 254 (293)
T PLN02917 244 LQLEEDLEQLK 254 (293)
T ss_pred ccchhccHHHH
Confidence 33456666654
No 63
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.65 E-value=9.2e-16 Score=129.61 Aligned_cols=118 Identities=28% Similarity=0.432 Sum_probs=95.6
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~ 84 (365)
|||||||.|+|| +.||+|++++|+|||+|+++.+..+++++|+|++++. .+..++. +.++.++..
T Consensus 1 ~vILa~G~s~Rm------g~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~~----~~~~~~~-----~~~~~~v~~ 65 (160)
T PF12804_consen 1 AVILAAGKSSRM------GGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGEE----EIYEYLE-----RYGIKVVVD 65 (160)
T ss_dssp EEEEESSSCGGG------TSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEESTH----HHHHHHT-----TTTSEEEE-
T ss_pred CEEECCcCcccC------CCCccceeECCccHHHHHHHHhhccCCceEEEecChH----HHHHHHh-----ccCceEEEe
Confidence 799999999999 3499999999999999999999999999999999852 4444443 235777765
Q ss_pred C-CCCChHHHHHHHHHHc-CCCcEEEEeCCcc--cCCChHHHHHHHHhcCCeEEEEE
Q 017849 85 P-EDVGTAGALRAIAHHL-TAKDVLVVSGDLV--SDVPPGAVTAAHRRHDAVVTAMI 137 (365)
Q Consensus 85 ~-~~~gt~~al~~~~~~i-~~~~~lv~~~D~i--~~~~l~~~l~~h~~~~a~~t~l~ 137 (365)
+ ...|+..+++.++..+ ..++|++++||+. ....+..+++.+.+.++++++..
T Consensus 66 ~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 66 PEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred ccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 4 3589999999999888 6788999999974 45668999999887777776654
No 64
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=5.4e-16 Score=128.79 Aligned_cols=106 Identities=23% Similarity=0.395 Sum_probs=86.8
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
|.|||||||.||||.|| |...||+|+.|.|+|||++.++.|.++||.+|+||+++.. ++. +++.. +.++.++
T Consensus 1 ~nAIIlAAG~gsR~~pl-T~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlk--E~F-eYLkd----Ky~vtLv 72 (231)
T COG4750 1 MNAIILAAGLGSRFVPL-TQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLK--EQF-EYLKD----KYDVTLV 72 (231)
T ss_pred CceEEEecccccccccc-cccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehH--HHH-HHHHH----hcCeEEE
Confidence 46999999999999999 9999999999999999999999999999999999999652 233 45554 3468888
Q ss_pred EcCCC--CChHHHHHHHHHHcCCCcEEEEeCCcccCCC
Q 017849 83 TVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118 (365)
Q Consensus 83 ~~~~~--~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~ 118 (365)
..+.. ....-++..+++++. +..|+.+|.+...+
T Consensus 73 yN~kY~~yNn~ySlyla~d~l~--ntYiidsDnyl~kN 108 (231)
T COG4750 73 YNPKYREYNNIYSLYLARDFLN--NTYIIDSDNYLTKN 108 (231)
T ss_pred eCchHHhhhhHHHHHHHHHHhc--ccEEeccchHhhhh
Confidence 76653 566788999999985 45667889765433
No 65
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.62 E-value=8.2e-15 Score=126.36 Aligned_cols=121 Identities=22% Similarity=0.284 Sum_probs=92.8
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
|.|||||||+|+||. ..||+|++++|+|||+|+++++..+++++|+|++++. .+.+..++... ...+.
T Consensus 1 m~aIILAgG~gsRmg-----~~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~--~~~~~~~l~~~-----~~~~~ 68 (183)
T TIGR00454 1 MDALIMAGGKGTRLG-----GVEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPH--TPKTEEYINSA-----YKDYK 68 (183)
T ss_pred CeEEEECCccCccCC-----CCCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCC--HHHHHHHHhhc-----CcEEE
Confidence 579999999999993 2799999999999999999999999999999999864 24666666542 12222
Q ss_pred EcCCCCChHHHHHHHHHHcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEE
Q 017849 83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAM 136 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l 136 (365)
.....|...++..+++.+. .++|+++.||+ +....++.+++.+...+...+.+
T Consensus 69 -~~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~ 124 (183)
T TIGR00454 69 -NASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAV 124 (183)
T ss_pred -ecCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 2456788888888877543 56899999994 56778999999887655444433
No 66
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.60 E-value=5.7e-14 Score=126.43 Aligned_cols=185 Identities=16% Similarity=0.186 Sum_probs=115.1
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~ 84 (365)
+||+|+|.|+|| . +|+|++++|+|||.|+++++..+++++|+|+++. +.+.+++.. .++.++..
T Consensus 2 ~iIpA~g~s~R~----~---~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~----~~i~~~~~~-----~g~~~v~~ 65 (238)
T TIGR00466 2 VIIPARLASSRL----P---GKPLEDIFGKPMIVHVAENANESGADRCIVATDD----ESVAQTCQK-----FGIEVCMT 65 (238)
T ss_pred EEEecCCCCCCC----C---CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH----HHHHHHHHH-----cCCEEEEe
Confidence 799999999999 3 5999999999999999999998899999999873 345555543 23444432
Q ss_pred --CCCCChHHHHHHHHHHc---CCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849 85 --PEDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (365)
Q Consensus 85 --~~~~gt~~al~~~~~~i---~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~ 157 (365)
....|+. .+..+...+ ..+.++++.|| ++....+..+++.+.+.+++++.+..+.. ++.+..
T Consensus 66 ~~~~~~Gt~-r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~--d~~~~~-------- 134 (238)
T TIGR00466 66 SKHHNSGTE-RLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIH--DAEEAF-------- 134 (238)
T ss_pred CCCCCChhH-HHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecC--CHHHcc--------
Confidence 2234443 333343333 23458889999 67788899999988655556655554432 221110
Q ss_pred CCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHh--hcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILR--AVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (365)
Q Consensus 158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~--~~~~~~~~~~l~~~giyi~s~~vl~~~~~~ 226 (365)
..+...++.|.+|+.+++.... ....++.++ +.|. ....+.+.|||.|+++.|..|..-
T Consensus 135 --~p~~vk~v~~~~g~alyfsr~~------ip~~R~~~~~~~tpq--~~~~~~h~Giy~~~~~~L~~~~~~ 195 (238)
T TIGR00466 135 --NPNAVKVVLDSQGYALYFSRSL------IPFDRDFFAKRQTPV--GDNLLRHIGIYGYRAGFIEEYVAW 195 (238)
T ss_pred --CCCceEEEeCCCCeEEEecCCC------CCCCCCccccccccc--ccceeEEEEEEeCCHHHHHHHHhC
Confidence 1122334557667654433211 111111111 1111 112577999999999999988643
No 67
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.55 E-value=4.9e-13 Score=118.80 Aligned_cols=116 Identities=23% Similarity=0.302 Sum_probs=86.2
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
.|||||||.|+|| ....||+|++++|+|||+|+++++..+ ++++++|++++... +.+..++.. ...+.++
T Consensus 1 ~aiIlAaG~s~R~----~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~-~~~~~~~~~----~~~~~~~ 71 (217)
T TIGR00453 1 SAVIPAAGRGTRF----GSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQ-EFFQKYLVA----RAVPKIV 71 (217)
T ss_pred CEEEEcCcccccC----CCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHH-HHHHHHhhc----CCcEEEe
Confidence 3799999999999 445799999999999999999999998 79999999985421 233333321 1123333
Q ss_pred EcCCCCChHHHHHHHHHHc-CCCcEEEEeCC--cccCCChHHHHHHHHhcC
Q 017849 83 TVPEDVGTAGALRAIAHHL-TAKDVLVVSGD--LVSDVPPGAVTAAHRRHD 130 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i-~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~ 130 (365)
....+..++++.++..+ ..+.++++.|| ++....+..+++.+.+.+
T Consensus 72 --~~~~~~~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 120 (217)
T TIGR00453 72 --AGGDTRQDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKAG 120 (217)
T ss_pred --CCCchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 22234668899888877 45679999999 477778999999886643
No 68
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.54 E-value=1.6e-13 Score=118.51 Aligned_cols=120 Identities=28% Similarity=0.346 Sum_probs=90.8
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
+.+||||||.|+||. .||+|++++|+|||+|+++.+..+++++|+|+++... ..+.+++. ..++.++
T Consensus 1 ~~~vIlAgG~s~R~g------~~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~--~~~~~~~~-----~~~~~~~ 67 (186)
T cd04182 1 IAAIILAAGRSSRMG------GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEA--DAVRAALA-----GLPVVVV 67 (186)
T ss_pred CeEEEECCCCCCCCC------CCceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcH--HHHHHHhc-----CCCeEEE
Confidence 358999999999993 2899999999999999999999999999999998542 23333332 1244444
Q ss_pred EcC-CCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEE
Q 017849 83 TVP-EDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTA 135 (365)
Q Consensus 83 ~~~-~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~ 135 (365)
..+ ...|++++++.+++.+. .+.+++++||+ +....+..+++.+...++.+.+
T Consensus 68 ~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 125 (186)
T cd04182 68 INPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGIVA 125 (186)
T ss_pred eCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 433 34789999999988876 46799999995 5566788888887755554433
No 69
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.51 E-value=2.4e-13 Score=112.34 Aligned_cols=110 Identities=25% Similarity=0.389 Sum_probs=88.9
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
|.+||+|||+|+||. . .-|||++++|||||+|+++.+.+ .+++|+++++.+. ..++.++.++ +++++
T Consensus 1 m~~iiMAGGrGtRmg----~-~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~t--p~t~~~~~~~-----gv~vi 67 (177)
T COG2266 1 MMAIIMAGGRGTRMG----R-PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHT--PKTKEYLESV-----GVKVI 67 (177)
T ss_pred CceEEecCCcccccC----C-CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCC--HhHHHHHHhc-----CceEE
Confidence 469999999999993 2 45999999999999999999988 7899999998663 4778888764 46666
Q ss_pred EcCCCCChHHHHHHHHHHcCCCcEEEEeCCcc--cCCChHHHHHHHH
Q 017849 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV--SDVPPGAVTAAHR 127 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i--~~~~l~~~l~~h~ 127 (365)
.. ...|-..-++.+.+.+. .++|++++|+. .+..+..+++.+.
T Consensus 68 ~t-pG~GYv~Dl~~al~~l~-~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 68 ET-PGEGYVEDLRFALESLG-TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred Ec-CCCChHHHHHHHHHhcC-CceEEEecccccCCHHHHHHHHHHHh
Confidence 53 34677788999999885 49999999964 3456788888876
No 70
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.51 E-value=2.5e-13 Score=117.75 Aligned_cols=120 Identities=16% Similarity=0.238 Sum_probs=89.8
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~ 84 (365)
+||||||.|+|| +.||+|++++|+|||+|+++.+.++++++|+|++++.. +.+.+.+.. ..++.++..
T Consensus 2 ~iIla~G~s~R~------g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~--~~~~~~~~~----~~~v~~v~~ 69 (188)
T TIGR03310 2 AIILAAGLSSRM------GQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEA--DELVALLAN----HSNITLVHN 69 (188)
T ss_pred eEEECCCCcccC------CCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcH--HHHHHHhcc----CCCeEEEEC
Confidence 799999999999 35899999999999999999999889999999998653 232222211 235666554
Q ss_pred CC-CCChHHHHHHHHH-HcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEE
Q 017849 85 PE-DVGTAGALRAIAH-HLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAM 136 (365)
Q Consensus 85 ~~-~~gt~~al~~~~~-~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l 136 (365)
+. ..|++++++.+++ ....+.++++.||+ +....++.+++.+...+..+++.
T Consensus 70 ~~~~~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~ 125 (188)
T TIGR03310 70 PQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP 125 (188)
T ss_pred cChhcCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence 33 3688899998877 23346799999995 55667889998887666555443
No 71
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.50 E-value=1.3e-12 Score=116.14 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=88.1
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
.+||||||.|+|| ....||+|+|++|+|||+|+++++..++ +++|+|++++... .....+... .....+.++
T Consensus 2 ~~vILAaG~s~R~----~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~--~~~~~~~~~-~~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAGSGSRM----GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDI--DLAKELAKY-GLSKVVKIV 74 (218)
T ss_pred EEEEECCcccccC----CCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHH--HHHHHHHhc-ccCCCeEEE
Confidence 5899999999999 4347999999999999999999999876 8999999885421 222222111 111223333
Q ss_pred EcCCCCChHHHHHHHHHHcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 017849 83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~ 135 (365)
....+..++++.+++.+. .+.++++.|| ++....++.+++.+.+.++.+++
T Consensus 75 --~~~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~ 130 (218)
T cd02516 75 --EGGATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPA 130 (218)
T ss_pred --CCchHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEE
Confidence 233456788999988873 3568889999 57777899999988766544433
No 72
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=9e-13 Score=112.90 Aligned_cols=187 Identities=19% Similarity=0.232 Sum_probs=130.5
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|++.+||+|.-.+||| .. |||..|+|+|||.|+.++..++|.++|+|.+.+ +.+.+.+.. .+.+
T Consensus 2 ~~~~viIPAR~~STRL----pg---KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd----e~I~~av~~-----~G~~ 65 (247)
T COG1212 2 MKFVVIIPARLASTRL----PG---KPLADIGGKPMIVRVAERALKSGADRVVVATDD----ERIAEAVQA-----FGGE 65 (247)
T ss_pred CceEEEEecchhcccC----CC---CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC----HHHHHHHHH-----hCCE
Confidence 7889999999999999 44 999999999999999999999999999999984 467777764 3555
Q ss_pred EEEcCC--CCChHHHHHHHHHHcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849 81 VATVPE--DVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (365)
Q Consensus 81 i~~~~~--~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~ 153 (365)
.+.... ..|| +.+.++.+.+. .+.++-+.|| ++....+..+++..++.++++..+..+.. ++.+.
T Consensus 66 avmT~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~--~~ee~----- 137 (247)
T COG1212 66 AVMTSKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKIT--DEEEA----- 137 (247)
T ss_pred EEecCCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecC--CHHHh-----
Confidence 555544 3454 55666655553 2347777899 57677788888888877777665554432 22221
Q ss_pred ccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCc
Q 017849 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD 228 (365)
Q Consensus 154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~ 228 (365)
...+-..+++|.+|+.|+|.++....... . . .....+...|||.|++.+|..|..-..
T Consensus 138 -----~nPN~VKvV~d~~g~ALYFSRs~iP~~rd------~---~---~~~p~l~HIGIYayr~~~L~~f~~~~p 195 (247)
T COG1212 138 -----FNPNVVKVVLDKEGYALYFSRAPIPYGRD------N---F---GGTPFLRHIGIYAYRAGFLERFVALKP 195 (247)
T ss_pred -----cCCCcEEEEEcCCCcEEEEEcCCCCCccc------c---c---CCcchhheeehHHhHHHHHHHHHhcCC
Confidence 12334557788888877665432221110 0 0 002467899999999999998876543
No 73
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.49 E-value=7.7e-13 Score=117.87 Aligned_cols=124 Identities=12% Similarity=0.144 Sum_probs=90.6
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
++.|||||+|.|+|| . +|+|++++|+|||+|+++.+..++ +++|+|++.. +.+.+++... ...+.
T Consensus 1 ~~~~iIlA~G~s~R~----~---~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~----~~i~~~~~~~---~~~~~ 66 (223)
T cd02513 1 KILAIIPARGGSKGI----P---GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDD----EEIAEVARKY---GAEVP 66 (223)
T ss_pred CeEEEEecCCCCCCC----C---CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHHHh---CCCce
Confidence 357999999999999 4 399999999999999999999887 7888877652 2445554432 11112
Q ss_pred EEEc----CCCCChHHHHHHHHHHcCC-----CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEee
Q 017849 81 VATV----PEDVGTAGALRAIAHHLTA-----KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICS 139 (365)
Q Consensus 81 i~~~----~~~~gt~~al~~~~~~i~~-----~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~ 139 (365)
+... .+..|+.++++.+++.+.. +.++++.||. +...++..+++.+...+++.++....
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~ 136 (223)
T cd02513 67 FLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE 136 (223)
T ss_pred eeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 2221 2345788999988876642 5799999994 77888999999998776665555443
No 74
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.48 E-value=6e-13 Score=119.33 Aligned_cols=128 Identities=19% Similarity=0.308 Sum_probs=92.2
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
|++.+||||||.|+|| ..+.||+|++++|+|||+|+++++..++ +++|+|+++.... ..+.+++..+......+
T Consensus 1 ~~~~~iIlAaG~g~R~----g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~-~~~~~~~~~~~~~~~~~ 75 (230)
T PRK13385 1 MNYELIFLAAGQGKRM----NAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQER-KHVQDLMKQLNVADQRV 75 (230)
T ss_pred CceEEEEECCeecccc----CCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhH-HHHHHHHHhcCcCCCce
Confidence 7788999999999999 6668999999999999999999998765 8999999875421 23334443321110123
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCc-EEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 017849 80 EVATVPEDVGTAGALRAIAHHLTAKD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (365)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~~~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~ 135 (365)
.++ ....+..++++.+++.+...+ ++++.|| ++....++.+++.+.+.++.+.+
T Consensus 76 ~~v--~~g~~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~ 132 (230)
T PRK13385 76 EVV--KGGTERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICA 132 (230)
T ss_pred EEc--CCCchHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEE
Confidence 333 333455689999988775434 6777899 67777899999988776655444
No 75
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.46 E-value=1e-12 Score=117.54 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=89.6
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
|.+.+||||||.|+|| +...||+|++++|+|||+|+++++..++ +++|+|+++.... +.+....... ...+
T Consensus 2 ~~~~~iILAaG~s~R~----g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~-~~~~~~~~~~---~~~~ 73 (227)
T PRK00155 2 MMVYAIIPAAGKGSRM----GADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDR-PDFAELLLAK---DPKV 73 (227)
T ss_pred CceEEEEEcCcccccc----CCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHH-HHHHHHhhcc---CCce
Confidence 6788999999999999 5668999999999999999999999875 8999999985421 1222221110 0123
Q ss_pred EEEEcCCCCChHHHHHHHHHHcC-CCcEEEEeCC--cccCCChHHHHHHHHhcCC
Q 017849 80 EVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDA 131 (365)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a 131 (365)
.++ ....+.+++++.+++.+. .+.++++.|| ++....++.+++.+.+.++
T Consensus 74 ~~~--~~~~~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~ 126 (227)
T PRK00155 74 TVV--AGGAERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETGA 126 (227)
T ss_pred EEe--CCcchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCCC
Confidence 332 233457899999988773 3568888899 6777889999998876543
No 76
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.43 E-value=1.4e-12 Score=117.84 Aligned_cols=123 Identities=22% Similarity=0.300 Sum_probs=88.6
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
.+.+||||||.|+|| +...||+|++++|+|||+|+++.+... ++++|+|+++.... +.+...+..+ +..
T Consensus 24 ~i~aIILAAG~gsRm----g~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~-~~~~~~~~~~-----~~~ 93 (252)
T PLN02728 24 SVSVILLAGGVGKRM----GANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYR-DVFEEAVENI-----DVP 93 (252)
T ss_pred ceEEEEEcccccccC----CCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHH-HHHHHHHHhc-----CCc
Confidence 356899999999999 666899999999999999999999884 89999999985422 2333333321 222
Q ss_pred EEEcCCCCChHHHHHHHHHHcCCCcEEEEeCC----cccCCChHHHHHHHHhcCCeEE
Q 017849 81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGD----LVSDVPPGAVTAAHRRHDAVVT 134 (365)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D----~i~~~~l~~~l~~h~~~~a~~t 134 (365)
+.......+..++++.++..+..+..+|+.+| ++....+..+++...+.++.++
T Consensus 94 i~~v~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i~ 151 (252)
T PLN02728 94 LKFALPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAAVL 151 (252)
T ss_pred eEEcCCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEEE
Confidence 33233445667889999887754455666667 4555667888888877766543
No 77
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.43 E-value=1.1e-12 Score=113.10 Aligned_cols=112 Identities=27% Similarity=0.344 Sum_probs=85.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
+.+||||||.|+|| . .||++++++|+|||+|+++.+... +++|+|+++.... . .. ..++.++
T Consensus 1 ~~~iILAgG~s~Rm----g--~~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~--~----~~-----~~~~~~v 62 (181)
T cd02503 1 ITGVILAGGKSRRM----G--GDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQE--R----YA-----LLGVPVI 62 (181)
T ss_pred CcEEEECCCccccC----C--CCceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChH--H----Hh-----hcCCcEe
Confidence 46899999999999 3 389999999999999999999887 8999999985521 1 11 1234455
Q ss_pred EcC-CCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeE
Q 017849 83 TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV 133 (365)
Q Consensus 83 ~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~ 133 (365)
..+ ...|..++++.++..+..+.++++.||+ +....+..+++.+ ..+.++
T Consensus 63 ~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 115 (181)
T cd02503 63 PDEPPGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA-EEGADA 115 (181)
T ss_pred eCCCCCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence 433 3578899999998888667899999996 5566688888776 334443
No 78
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.42 E-value=2.9e-12 Score=111.41 Aligned_cols=120 Identities=19% Similarity=0.259 Sum_probs=86.3
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~ 83 (365)
.+||||||.|+|| +.+|.|++++|+|||+|+++.+...++++++|+++... +.+ .++........++.++.
T Consensus 2 ~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~--~~~-~~~~~~~~~~~~~~~~~ 72 (190)
T TIGR03202 2 VAIYLAAGQSRRM------GENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKY--AHL-SWLDPYLLADERIMLVC 72 (190)
T ss_pred eEEEEcCCccccC------CCCceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCcc--chh-hhhhHhhhcCCCeEEEE
Confidence 5899999999999 34799999999999999999888889999999997542 111 11211111122455554
Q ss_pred cC-CCCChHHHHHHHHHHcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCe
Q 017849 84 VP-EDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV 132 (365)
Q Consensus 84 ~~-~~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~ 132 (365)
.+ ...|.+.+++.+++.+. .+.+++++|| ++....+..+++..+.....
T Consensus 73 ~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~ 127 (190)
T TIGR03202 73 CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDD 127 (190)
T ss_pred CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 33 34688899999988763 4679999999 46666788888876554443
No 79
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.40 E-value=2.3e-12 Score=112.32 Aligned_cols=114 Identities=23% Similarity=0.303 Sum_probs=85.1
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|.+.+||||||.|+|| . +.||++++++|+|||+|+++.+. .++++|+|+++... +.+ .. .++.
T Consensus 2 ~~~~~vILA~G~s~Rm----~-~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~--~~~----~~-----~~~~ 64 (193)
T PRK00317 2 PPITGVILAGGRSRRM----G-GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNL--ARY----AA-----FGLP 64 (193)
T ss_pred CCceEEEEcCCCcccC----C-CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCCh--HHH----Hh-----cCCc
Confidence 5789999999999999 3 47899999999999999999998 77999999887431 111 11 1233
Q ss_pred EEEcCC--CCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCC
Q 017849 81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDA 131 (365)
Q Consensus 81 i~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a 131 (365)
++.... ..|+..+++.+++....+.++++.||. +....+..+++.+.+.+.
T Consensus 65 ~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 119 (193)
T PRK00317 65 VIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDA 119 (193)
T ss_pred EEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCC
Confidence 443322 368889999888876667799999995 555668888887654433
No 80
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.39 E-value=4.3e-12 Score=120.99 Aligned_cols=119 Identities=24% Similarity=0.352 Sum_probs=89.2
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcc-
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLH- 78 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~- 78 (365)
|++.+||||||.|+|| +...||++++++|+|||+|+++.+..++ +++|+|++++... +....+.. ...
T Consensus 4 m~v~aIILAAG~GsRm----g~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~-~~~~~~~~-----~~~~ 73 (378)
T PRK09382 4 SDISLVIVAAGRSTRF----SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDI-AYMKKALP-----EIKF 73 (378)
T ss_pred CcceEEEECCCCCccC----CCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHH-HHHHHhcc-----cCCe
Confidence 5678999999999999 6678999999999999999999999988 7999999885421 12222111 111
Q ss_pred eEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCC--cccCCChHHHHHHHHhcCC
Q 017849 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA 131 (365)
Q Consensus 79 v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a 131 (365)
+.+ .....+..++++.+++.+..+.+++..|| ++....++.+++..++.++
T Consensus 74 v~~--v~gG~~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~~~a 126 (378)
T PRK09382 74 VTL--VTGGATRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDKADC 126 (378)
T ss_pred EEE--eCCCchHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhcCCe
Confidence 222 23445678999999988866678888898 5666778888887765443
No 81
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.38 E-value=5.8e-12 Score=110.45 Aligned_cols=112 Identities=19% Similarity=0.203 Sum_probs=84.7
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|++.+||||||.|+|| +.+|++++++|+|||+|+++.+... +++|+|+++.. +....... .++.
T Consensus 6 ~~~~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~---~~~~~~~~------~~~~ 69 (200)
T PRK02726 6 NNLVALILAGGKSSRM------GQDKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP---ERYQSLLP------PGCH 69 (200)
T ss_pred CCceEEEEcCCCcccC------CCCceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH---HHHHhhcc------CCCe
Confidence 5678999999999999 3479999999999999999999754 78898887632 12222111 1344
Q ss_pred EEEcC-CCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHh
Q 017849 81 VATVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRR 128 (365)
Q Consensus 81 i~~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~ 128 (365)
++... ...|...+++.+++.+..+.++|+.||+ +....+..+++....
T Consensus 70 ~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 70 WLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred EecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 55433 3478999999999888767899999994 666678888887643
No 82
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.38 E-value=5.1e-12 Score=109.40 Aligned_cols=118 Identities=21% Similarity=0.291 Sum_probs=86.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
+.+||||||.|+|| . .+||+|++++|+|||+|+++.+.. ++++|+|+++... . .+... ..++.++
T Consensus 1 ~~~iILAgG~s~Rm----g-~~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~---~--~~~~~----~~~~~~i 65 (186)
T TIGR02665 1 ISGVILAGGRARRM----G-GRDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNP---E--RYAQA----GFGLPVV 65 (186)
T ss_pred CeEEEEcCCccccC----C-CCCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCH---H--HHhhc----cCCCcEE
Confidence 35899999999999 3 359999999999999999999975 5899988886432 1 11111 1234444
Q ss_pred Ec--CCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEE
Q 017849 83 TV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTA 135 (365)
Q Consensus 83 ~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~ 135 (365)
.. +...|+.++++.+++.+..+.++++.||. +....++.+++.+.+.++.+++
T Consensus 66 ~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 122 (186)
T TIGR02665 66 PDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEASDADIAV 122 (186)
T ss_pred ecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence 43 33589999999998888667899999995 5556678888876554444433
No 83
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.33 E-value=2.5e-11 Score=107.21 Aligned_cols=119 Identities=27% Similarity=0.427 Sum_probs=84.5
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
.+||+|||.|+|| ..+.||++++++|+|+|.|+|+.+.+. .+++|+|++...+. +.+++++.. ..+.++
T Consensus 2 ~aIilAaG~G~R~----g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~-~~~~~~~~~-----~~v~iv 71 (221)
T PF01128_consen 2 AAIILAAGSGSRM----GSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDI-DYVEELLSK-----KKVKIV 71 (221)
T ss_dssp EEEEEESS-STCC----TSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGH-HHHHHHHHH-----TTEEEE
T ss_pred EEEEeCCccchhc----CcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhH-HHHHHhhcC-----CCEEEe
Confidence 5899999999999 778999999999999999999999886 48999999986543 455555543 234444
Q ss_pred EcCCCCChHHHHHHHHHHcCCC-cEEEEeCC----cccCCChHHHHHHHHh-cCCeEEE
Q 017849 83 TVPEDVGTAGALRAIAHHLTAK-DVLVVSGD----LVSDVPPGAVTAAHRR-HDAVVTA 135 (365)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~~-~~lv~~~D----~i~~~~l~~~l~~h~~-~~a~~t~ 135 (365)
.+.....++++.++..+... +++++ .| ++....+.++++..++ .++.+..
T Consensus 72 --~GG~tR~~SV~ngL~~l~~~~d~VlI-HDaaRPfv~~~~i~~~i~~~~~~~~aai~~ 127 (221)
T PF01128_consen 72 --EGGATRQESVYNGLKALAEDCDIVLI-HDAARPFVSPELIDRVIEAAREGHGAAIPA 127 (221)
T ss_dssp --E--SSHHHHHHHHHHCHHCTSSEEEE-EETTSTT--HHHHHHHHHHHHHTCSEEEEE
T ss_pred --cCChhHHHHHHHHHHHHHcCCCEEEE-EccccCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 35667789999998887643 33333 35 5555668888888877 5555443
No 84
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.31 E-value=2.8e-11 Score=106.49 Aligned_cols=126 Identities=23% Similarity=0.273 Sum_probs=88.0
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
|.+.+||+|||.|+|| ..+.||.+++++|||||+|+|+.+..+. +++|+|+++..+. ..+.++.. .. .+-
T Consensus 3 ~~~~~vilAaG~G~R~----~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~-~~~~~~~~--~~--~~~ 73 (230)
T COG1211 3 MMVSAVILAAGFGSRM----GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDD-PYFEKLPK--LS--ADK 73 (230)
T ss_pred ceEEEEEEcCcccccc----CCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhh-HHHHHhhh--hc--cCC
Confidence 5678999999999999 7899999999999999999999998876 7999999985332 34444442 11 122
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCC--Cc-EEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 017849 80 EVATVPEDVGTAGALRAIAHHLTA--KD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (365)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~~--~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~ 135 (365)
.+....+.....++++.+++.+.. ++ |||..+= +++...+.++++.....++.+++
T Consensus 74 ~v~~v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~a 134 (230)
T COG1211 74 RVEVVKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILA 134 (230)
T ss_pred eEEEecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEE
Confidence 233335667788999999988872 33 3333332 55556678888555445554444
No 85
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.31 E-value=9.2e-11 Score=104.42 Aligned_cols=121 Identities=15% Similarity=0.206 Sum_probs=89.0
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~ 83 (365)
|||+|+|.|+|| . .|.+++++|+|||.|+++.+.+++ +++|+|.+.. +.+.+....+ + ..+.+..
T Consensus 2 aiIpArG~Skr~----~---~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~----~~i~~~a~~~-g--~~v~~~r 67 (222)
T TIGR03584 2 AIIPARGGSKRI----P---RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD----EEIAEVAKSY-G--ASVPFLR 67 (222)
T ss_pred EEEccCCCCCCC----C---CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC----HHHHHHHHHc-C--CEeEEeC
Confidence 799999999999 4 399999999999999999999987 6777776653 2455554432 1 1222221
Q ss_pred ----cCCCCChHHHHHHHHHHcC----CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 017849 84 ----VPEDVGTAGALRAIAHHLT----AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS 139 (365)
Q Consensus 84 ----~~~~~gt~~al~~~~~~i~----~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~ 139 (365)
.....|+.++++.+++.+. .+.++++.+| ++...+++.+++.+.+.+++..+.+.+
T Consensus 68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~ 133 (222)
T TIGR03584 68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTS 133 (222)
T ss_pred hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeec
Confidence 1335788899999987663 2558999999 577788999999998766776655544
No 86
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.30 E-value=4.4e-11 Score=101.83 Aligned_cols=117 Identities=27% Similarity=0.363 Sum_probs=94.7
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i 81 (365)
.+.+||||+|.|+|| +.+|.|+|+.|+||+.++++....++++++++++++.. .+...... ...++.+
T Consensus 5 ~v~~VvLAAGrssRm------G~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~-~~~~~a~~-----~~~~~~~ 72 (199)
T COG2068 5 TVAAVVLAAGRSSRM------GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRV-AEAVEALL-----AQLGVTV 72 (199)
T ss_pred ceEEEEEcccccccC------CCcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcch-hhHHHhhh-----ccCCeEE
Confidence 457999999999999 47899999999999999999999999999999999652 11222222 1346777
Q ss_pred EEcCC-CCChHHHHHHHHHHcCCC--cEEEEeCC--cccCCChHHHHHHHHhcC
Q 017849 82 ATVPE-DVGTAGALRAIAHHLTAK--DVLVVSGD--LVSDVPPGAVTAAHRRHD 130 (365)
Q Consensus 82 ~~~~~-~~gt~~al~~~~~~i~~~--~~lv~~~D--~i~~~~l~~~l~~h~~~~ 130 (365)
+..+. ..|.+.+++.+......+ .++++.|| .+...++..+++.++..+
T Consensus 73 v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~ 126 (199)
T COG2068 73 VVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRARG 126 (199)
T ss_pred EeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhccccC
Confidence 77654 589999999998887644 69999999 488889999999998773
No 87
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.21 E-value=1.5e-10 Score=110.69 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=87.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
+.+||||||.|+|| . +.||+|++++|+|||+|+++.+.. .+++|+|++.... +.+.+++. ++.++
T Consensus 6 i~~VILAgG~s~Rm----g-g~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~--~~~~~~~~-------~~~~i 70 (366)
T PRK14489 6 IAGVILAGGLSRRM----N-GRDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDP--ARYQDLFP-------GLPVY 70 (366)
T ss_pred ceEEEEcCCcccCC----C-CCCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCH--HHHHhhcc-------CCcEE
Confidence 57999999999999 3 478999999999999999999975 4899998776432 23332221 12222
Q ss_pred Ec--CCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEE
Q 017849 83 TV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAM 136 (365)
Q Consensus 83 ~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l 136 (365)
.. +...|..++++.+++.+..+.+++++||+ +....+..+++.+...++++.+.
T Consensus 71 ~d~~~g~~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 71 PDILPGFQGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred ecCCCCCCChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 22 22368889999998887666799999994 55666888888776666665543
No 88
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.18 E-value=1.7e-10 Score=99.80 Aligned_cols=111 Identities=22% Similarity=0.331 Sum_probs=81.2
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~ 80 (365)
|.+.+||||||+|+|| .+|+|++++|||||+|+++.|....- .++|..... . . .+. ..+++
T Consensus 3 ~~~~~vILAGG~srRm-------~dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~-~--~--~~~------~~g~~ 63 (192)
T COG0746 3 TPMTGVILAGGKSRRM-------RDKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRN-Q--G--RYA------EFGLP 63 (192)
T ss_pred CCceEEEecCCccccc-------cccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCc-h--h--hhh------ccCCc
Confidence 4688999999999999 24999999999999999999988754 455544422 1 1 111 12455
Q ss_pred EEEcCCCC-ChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 017849 81 VATVPEDV-GTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHD 130 (365)
Q Consensus 81 i~~~~~~~-gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~ 130 (365)
++...... |...+++.+++....+.+++++||+ +...-+..++....+.+
T Consensus 64 vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 64 VVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred eeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 66544333 9999999999988878999999995 44555666666665544
No 89
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.13 E-value=5.9e-10 Score=100.11 Aligned_cols=118 Identities=23% Similarity=0.297 Sum_probs=82.2
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~ 83 (365)
|||||||.|+|| . +|+|++++|+|||+|+++.+..++ +++++|+++.....+.+.+++.. .++.++.
T Consensus 2 aiIlA~G~S~R~----~---~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-----~~v~~v~ 69 (233)
T cd02518 2 AIIQARMGSTRL----P---GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-----LGVKVFR 69 (233)
T ss_pred EEEeeCCCCCCC----C---CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-----cCCeEEE
Confidence 799999999999 4 399999999999999999999988 89999998854211244444432 2344544
Q ss_pred cCCCCChHHHHHHHHHHcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 017849 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (365)
Q Consensus 84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~ 135 (365)
.+. .+.......+......+.++++.|| ++....++.+++.++..+++++.
T Consensus 70 ~~~-~~~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~ 122 (233)
T cd02518 70 GSE-EDVLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTS 122 (233)
T ss_pred CCc-hhHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 332 2222222223333334679999999 57777899999988776666553
No 90
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.12 E-value=6.6e-10 Score=97.08 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=72.8
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCC-cchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~g-kplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
|++.+||||||.|+|| +.+|++++++| +|||+|+++.+... +++|+|+++.. .. . ..+
T Consensus 7 ~~i~~vILAgG~s~Rm------G~~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~----~~----~------~~~ 65 (196)
T PRK00560 7 DNIPCVILAGGKSSRM------GENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK----KF----E------FNA 65 (196)
T ss_pred cCceEEEECCcccccC------CCCceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch----hc----c------cCC
Confidence 4578999999999999 46899999999 99999999999876 88899888731 11 0 122
Q ss_pred EEEEc--CCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHH
Q 017849 80 EVATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAV 122 (365)
Q Consensus 80 ~i~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~ 122 (365)
.++.. ....|...++..++.....+.++|++||+ +....++.+
T Consensus 66 ~~v~d~~~~~~gpl~gi~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 66 PFLLEKESDLFSPLFGIINAFLTLQTPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred cEEecCCCCCCCcHHHHHHHHHhcCCCeEEEEecCcCcCCHHHHHHH
Confidence 33332 22356666777666555567899999996 333345555
No 91
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.09 E-value=9.8e-10 Score=105.30 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=78.2
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i 81 (365)
.+.+||||||+|+|| +.+|+|++++|+|||+|+++.+... +++|+|+++... ... +.. .++.+
T Consensus 174 ~i~~iILAGG~SsRm------G~~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~----~~~-~~~-----~~v~~ 236 (369)
T PRK14490 174 PLSGLVLAGGRSSRM------GSDKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQ----AEQ-YRS-----FGIPL 236 (369)
T ss_pred CceEEEEcCCccccC------CCCcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCch----hhH-Hhh-----cCCcE
Confidence 457999999999999 3589999999999999999999764 788888776331 111 111 24555
Q ss_pred EEcCC-CCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHH
Q 017849 82 ATVPE-DVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAA 125 (365)
Q Consensus 82 ~~~~~-~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~ 125 (365)
+.... ..|...++..+++....+.+++++||+ +....+..+++.
T Consensus 237 i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 237 ITDSYLDIGPLGGLLSAQRHHPDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred EeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 54333 367778888887766656799999995 555567777665
No 92
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.00 E-value=3.5e-09 Score=99.91 Aligned_cols=108 Identities=21% Similarity=0.283 Sum_probs=78.9
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
+.+||||||+|+|| +.+|+|+++.|+||++|+++.+... +++|+|+++.. .... .. ...+.++
T Consensus 161 i~~IILAGGkSsRM------G~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~----~~~~-~~-----~~~v~~I 223 (346)
T PRK14500 161 LYGLVLTGGKSRRM------GKDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPS----QWQG-TP-----LENLPTL 223 (346)
T ss_pred ceEEEEeccccccC------CCCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCch----Hhhh-cc-----ccCCeEE
Confidence 56899999999999 4689999999999999999988754 88898887632 1111 00 0123344
Q ss_pred Ec-CCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHH
Q 017849 83 TV-PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHR 127 (365)
Q Consensus 83 ~~-~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~ 127 (365)
.. ....|...+|+.++.....+++++++||+ +....+..+++.+.
T Consensus 224 ~D~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 224 PDRGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred eCCCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence 32 23479999999998877656789999995 54556777777653
No 93
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.91 E-value=1.5e-09 Score=98.93 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=49.8
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHh--------CCCCeEEEEecCcchHHHHHHHHHhh
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLEL--------SNIKDLIVVVEGADAALRVGGWISAA 72 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~--------~gi~~v~vv~~~~~~~~~i~~~~~~~ 72 (365)
.+||||||.|||| +...||+++||+ |+|+|++.++++.. .+|..+++...+. .+.+.+++++.
T Consensus 2 a~viLaGG~GtRL----g~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t--~~~t~~~l~~~ 75 (266)
T cd04180 2 AVVLLAGGLGTRL----GKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYT--HEKTQCYFEKI 75 (266)
T ss_pred EEEEECCCCcccc----CCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchh--HHHHHHHHHHc
Confidence 5799999999999 789999999999 99999999999976 3455444444332 45788888763
No 94
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=6.5e-08 Score=82.71 Aligned_cols=125 Identities=12% Similarity=0.133 Sum_probs=85.5
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
|+..|||+|.|.++|. .. |.+.+++|+|||.|+++++.+++ +++|+|.+.. +.+.+....+ + ..+
T Consensus 2 ~~~iAiIpAR~gSKgI----~~---KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs----~~Il~~A~~y-g--ak~ 67 (228)
T COG1083 2 MKNIAIIPARGGSKGI----KN---KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDS----EEILEEAKKY-G--AKV 67 (228)
T ss_pred cceEEEEeccCCCCcC----Cc---cchHHhCCcchHHHHHHHHhcCCccceEEEcCCc----HHHHHHHHHh-C--ccc
Confidence 6778999999999998 33 99999999999999999999999 6888777663 3555544433 1 122
Q ss_pred EEEEc----CCCCChHHHHHHHHHHcC-CCc-EEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 017849 80 EVATV----PEDVGTAGALRAIAHHLT-AKD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS 139 (365)
Q Consensus 80 ~i~~~----~~~~gt~~al~~~~~~i~-~~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~ 139 (365)
.+... .....+.+++.++.+... .++ ++.+.+- +....+++..++.+.+.+.+-.+.+++
T Consensus 68 ~~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e 135 (228)
T COG1083 68 FLKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVE 135 (228)
T ss_pred cccCChhhccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEee
Confidence 23322 122344456666665543 333 6666654 788889999999998876654444443
No 95
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.79 E-value=6.3e-08 Score=85.84 Aligned_cols=113 Identities=20% Similarity=0.335 Sum_probs=77.6
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~ 82 (365)
.|||+|.|.++|| .. |.|.+++|+|||+|+++.+.+++ +++|+|.|... .+.+.+..+ ++.+.
T Consensus 1 iaiIpAR~gS~rl----p~---Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~----~i~~~~~~~-----g~~v~ 64 (217)
T PF02348_consen 1 IAIIPARGGSKRL----PG---KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDE----EIDDIAEEY-----GAKVI 64 (217)
T ss_dssp EEEEEE-SSSSSS----TT---GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSH----HHHHHHHHT-----TSEEE
T ss_pred CEEEecCCCCCCC----Cc---chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCH----HHHHHHHHc-----CCeeE
Confidence 3899999999999 44 99999999999999999999887 79999998843 566666543 23333
Q ss_pred EcCCCC-ChHHHHHHHHHHcCCC---cEEEEeCC--cccCCChHHHHHHHHhcCCe
Q 017849 83 TVPEDV-GTAGALRAIAHHLTAK---DVLVVSGD--LVSDVPPGAVTAAHRRHDAV 132 (365)
Q Consensus 83 ~~~~~~-gt~~al~~~~~~i~~~---~~lv~~~D--~i~~~~l~~~l~~h~~~~a~ 132 (365)
.-++.. ..-+....+......+ .++.+.|| ++.+..+..+++.+.+..++
T Consensus 65 ~~~~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 65 FRRGSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp E--TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred EcChhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 333332 2223334443333333 68888889 45566789999999888765
No 96
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.61 E-value=4.3e-06 Score=78.38 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=86.3
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHhCC------------CCeEEEEecCcchHHHHH
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELSN------------IKDLIVVVEGADAALRVG 66 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~~g------------i~~v~vv~~~~~~~~~i~ 66 (365)
++.+||||||.|||| +...||+|+||+ |+|++++.++.+...+ + .++|.++... .+.+.
T Consensus 15 ~va~viLaGG~GTRL----g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t-~~~t~ 88 (323)
T cd04193 15 KVAVLLLAGGQGTRL----GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEAT-HEETR 88 (323)
T ss_pred CEEEEEECCCccccc----CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhH-hHHHH
Confidence 467899999999999 889999999998 6999999999997742 3 3556666332 35788
Q ss_pred HHHHh--hhc-CCcceEEEEc---------------------CCCCChHHHHHHH-----HHHcC---CCcEEEEeCCcc
Q 017849 67 GWISA--AYV-DRLHVEVATV---------------------PEDVGTAGALRAI-----AHHLT---AKDVLVVSGDLV 114 (365)
Q Consensus 67 ~~~~~--~~~-~~~~v~i~~~---------------------~~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i 114 (365)
+++++ +++ .+..+.+..| -.+.|.|+..... ++.+. .+++.+.+.|.+
T Consensus 89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 168 (323)
T cd04193 89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI 168 (323)
T ss_pred HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence 88875 221 1112222211 0145666544432 22222 367888888963
Q ss_pred -c-CCChHHHHHHHHhcCCeEEEEEee
Q 017849 115 -S-DVPPGAVTAAHRRHDAVVTAMICS 139 (365)
Q Consensus 115 -~-~~~l~~~l~~h~~~~a~~t~l~~~ 139 (365)
. ..|. .++-.+..+++++.+-+.+
T Consensus 169 L~~~~Dp-~~lG~~~~~~~~~~~kvv~ 194 (323)
T cd04193 169 LVKVADP-VFIGFCISKGADVGAKVVR 194 (323)
T ss_pred cccccCH-HHhHHHHHcCCceEEEEEE
Confidence 3 4454 4678888889998875543
No 97
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=7e-07 Score=76.83 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=82.6
Q ss_pred CcceE-EEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcc
Q 017849 1 MDFQV-VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLH 78 (365)
Q Consensus 1 M~~~a-vIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~ 78 (365)
|.+.+ ||-|.-.+||| .. |.|+|++++|||+++|+++..+. +++++|.++..+..+.+..+..+. +
T Consensus 1 ~~~I~~IiQARmgStRL----pg---KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G 68 (241)
T COG1861 1 MSMILVIIQARMGSTRL----PG---KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G 68 (241)
T ss_pred CCcEEEEeeecccCccC----Cc---chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C
Confidence 44444 45555556788 44 99999999999999999998886 689999998665555666766642 4
Q ss_pred eEEEEcCCCCChH----HHHHHHHHHcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEE
Q 017849 79 VEVATVPEDVGTA----GALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT 134 (365)
Q Consensus 79 v~i~~~~~~~gt~----~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t 134 (365)
+.+. .|+. +....+.+....+.++=+.|| ++.+.-+..+++.|.++|++-+
T Consensus 69 ~~vf-----rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 69 FYVF-----RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred eeEe-----cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 4443 3443 333344555555668888999 5556667889999999988743
No 98
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.39 E-value=4.5e-05 Score=74.87 Aligned_cols=130 Identities=18% Similarity=0.286 Sum_probs=80.9
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHhC------------C-CCeEEEEecCcchHHHH
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS------------N-IKDLIVVVEGADAALRV 65 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~~------------g-i~~v~vv~~~~~~~~~i 65 (365)
++.+||||||.|||| +...||+|+||+ |+|++++.++++... + .-.++|.++... .+.+
T Consensus 106 kvavViLAGG~GTRL----g~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t-~~~t 180 (482)
T PTZ00339 106 EVAVLILAGGLGTRL----GSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFN-HDQT 180 (482)
T ss_pred CeEEEEECCCCcCcC----CCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcch-HHHH
Confidence 467999999999999 778999999994 899999999999764 1 124566666443 3577
Q ss_pred HHHHHhh--hc-CCcceEEEE----------------c------CCCCChHHHHHHH-----HHHcC---CCcEEEEeCC
Q 017849 66 GGWISAA--YV-DRLHVEVAT----------------V------PEDVGTAGALRAI-----AHHLT---AKDVLVVSGD 112 (365)
Q Consensus 66 ~~~~~~~--~~-~~~~v~i~~----------------~------~~~~gt~~al~~~-----~~~i~---~~~~lv~~~D 112 (365)
.+++.+. ++ +...+.+.. . -.+.|.|+..... ++.+. -+++.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 8888642 11 111121111 0 0135666544432 22222 3578888888
Q ss_pred cc-c-CCChHHHHHHHHhcCC-eEEEEE
Q 017849 113 LV-S-DVPPGAVTAAHRRHDA-VVTAMI 137 (365)
Q Consensus 113 ~i-~-~~~l~~~l~~h~~~~a-~~t~l~ 137 (365)
.+ . ..|. .++-.+...++ ++...+
T Consensus 261 N~L~k~~DP-~flG~~~~~~~~~~~~kv 287 (482)
T PTZ00339 261 NILAKVLDP-EFIGLASSFPAHDVLNKC 287 (482)
T ss_pred cccccccCH-HHhHHHHHCCchhheeee
Confidence 55 3 3343 36677777777 655443
No 99
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.94 E-value=0.0023 Score=59.26 Aligned_cols=191 Identities=13% Similarity=0.119 Sum_probs=109.1
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceeceeC-CcchHHHHHHHHHh----CCCC-eEEEEecCcchHHHHHHHHHhhhcC
Q 017849 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVD 75 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~-gkplI~~~L~~l~~----~gi~-~v~vv~~~~~~~~~i~~~~~~~~~~ 75 (365)
++.+|+||||.|||| ..+.||.++||. |+++++..++++.. .|.. ..+|-++... .+...+++++....
T Consensus 3 kvavl~LaGG~GTRL----G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~~~~~~ 77 (300)
T cd00897 3 KLVVLKLNGGLGTSM----GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNT-DEDTKKILKKYAGV 77 (300)
T ss_pred cEEEEEecCCccccc----CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcc-hHHHHHHHHHcCCC
Confidence 356789999999999 788999999995 56999999998854 3432 3555566443 35677787753211
Q ss_pred CcceEEEEc------------------------CCCCChHHHHHHH-----HHHcC---CCcEEEEeCCcccC-CChHHH
Q 017849 76 RLHVEVATV------------------------PEDVGTAGALRAI-----AHHLT---AKDVLVVSGDLVSD-VPPGAV 122 (365)
Q Consensus 76 ~~~v~i~~~------------------------~~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~~-~~l~~~ 122 (365)
+..+.+..| -.+.|.|+..... ++.+. .+++.+.+.|.+.. .|. .+
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp-~~ 156 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDL-RI 156 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCH-HH
Confidence 111211110 0134444433322 22222 36799999996543 454 37
Q ss_pred HHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCCc-EEEEeeccccccccccccHHHHhhcCcc
Q 017849 123 TAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRKSILRAVGQM 201 (365)
Q Consensus 123 l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~-~l~~~~~~~~~ek~~~i~~~~l~~~~~~ 201 (365)
+..|..+++++++=+.+.. .| .+.-|++... +|+ .++.+.+ ++.+...+...
T Consensus 157 lg~~~~~~~~~~~evv~Kt--~~--------------dek~G~l~~~-~g~~~vvEyse---------~p~e~~~~~~~- 209 (300)
T cd00897 157 LNHMVDNKAEYIMEVTDKT--RA--------------DVKGGTLIQY-EGKLRLLEIAQ---------VPKEHVDEFKS- 209 (300)
T ss_pred HHHHHhcCCceEEEEeecC--CC--------------CCcccEEEEE-CCEEEEEEecc---------CCHHHHHhhcC-
Confidence 8888888998887443321 11 1223444432 243 2333332 22222221110
Q ss_pred eeccCcccceeeeeCHHHHHHHHh
Q 017849 202 DIRADLMDAHMYAFNRSVLQEVLD 225 (365)
Q Consensus 202 ~~~~~l~~~giyi~s~~vl~~~~~ 225 (365)
.....+.++..++|+-+.|..+++
T Consensus 210 ~~~~~~~nt~n~~~~l~~L~~~~~ 233 (300)
T cd00897 210 IKKFKIFNTNNLWVNLKAVKRVVE 233 (300)
T ss_pred cccceEEEEeEEEEEHHHHHHHHH
Confidence 123457788888999988887764
No 100
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.83 E-value=0.00014 Score=62.44 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=62.1
Q ss_pred CCCceeceeCC--cchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcC-CCCChHHHHHHHHH
Q 017849 23 EVPKALLPVAN--RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP-EDVGTAGALRAIAH 99 (365)
Q Consensus 23 ~~pK~llpv~g--kplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~-~~~gt~~al~~~~~ 99 (365)
+.+|+|++++| +|||+|+++.+. +.+++|+|+++... .. . ..++.++... ...|...++..++.
T Consensus 2 G~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~~---~~----~-----~~~~~~i~d~~~g~gpl~~~~~gl~ 68 (178)
T PRK00576 2 GRDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPGQ---PL----P-----ELPAPVLRDELRGLGPLPATGRGLR 68 (178)
T ss_pred CCCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCCc---cc----c-----cCCCCEeccCCCCCCcHHHHHHHHH
Confidence 45899999999 999999999876 45899999987431 11 1 1123344321 23565565554443
Q ss_pred Hc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 017849 100 HL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHD 130 (365)
Q Consensus 100 ~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~ 130 (365)
.. ..+.++|++||+ +....+..+++.+...+
T Consensus 69 ~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~ 104 (178)
T PRK00576 69 AAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTD 104 (178)
T ss_pred HHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCC
Confidence 32 346899999995 55556777777654443
No 101
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.74 E-value=0.0054 Score=59.98 Aligned_cols=190 Identities=11% Similarity=0.121 Sum_probs=108.6
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceecee-CCcchHHHHHHHHHh----CCCC-eEEEEecCcchHHHHHHHHHhhhcCC
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR 76 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv-~gkplI~~~L~~l~~----~gi~-~v~vv~~~~~~~~~i~~~~~~~~~~~ 76 (365)
+.+|.||||.|||| ....||.++++ .|+.+++..++++.. .|.. ..+|-++... .+...++++.+-..+
T Consensus 80 ~avlkLnGGlGTrm----G~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T-~~~T~~~l~k~~~~~ 154 (469)
T PLN02474 80 LVVLKLNGGLGTTM----GCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNT-HDDTQKIVEKYTNSN 154 (469)
T ss_pred EEEEEecCCccccc----CCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCch-hHHHHHHHHHcCCCc
Confidence 45789999999999 88999999999 467999988888744 3432 2355555443 246677776532111
Q ss_pred cceEEEEc----------------C--------CCCChHHHHHHH-----HHHcC---CCcEEEEeCCcccC-CChHHHH
Q 017849 77 LHVEVATV----------------P--------EDVGTAGALRAI-----AHHLT---AKDVLVVSGDLVSD-VPPGAVT 123 (365)
Q Consensus 77 ~~v~i~~~----------------~--------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~~-~~l~~~l 123 (365)
..+.+..| . .+.|.|+..... ++.+. .+++.+.+.|.+.. .|. .++
T Consensus 155 ~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp-~~l 233 (469)
T PLN02474 155 IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDL-KIL 233 (469)
T ss_pred cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCH-HHH
Confidence 12221111 0 124444433222 22222 36789999996543 454 477
Q ss_pred HHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCCc-EEEEeeccccccccccccHHHHhhcCcce
Q 017849 124 AAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRKSILRAVGQMD 202 (365)
Q Consensus 124 ~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~-~l~~~~~~~~~ek~~~i~~~~l~~~~~~~ 202 (365)
..|..+++++++=+..... + ...-|.+. ..+|+ +++.+.+ ++.+....... .
T Consensus 234 g~~~~~~~e~~~ev~~Kt~--~--------------d~kgG~l~-~~dgk~~lvEysq---------vp~e~~~~f~~-~ 286 (469)
T PLN02474 234 NHLIQNKNEYCMEVTPKTL--A--------------DVKGGTLI-SYEGKVQLLEIAQ---------VPDEHVNEFKS-I 286 (469)
T ss_pred HHHHhcCCceEEEEeecCC--C--------------CCCccEEE-EECCEEEEEEEec---------CCHHHHHhhcc-c
Confidence 8888888888775443221 1 11224443 22343 2333432 22222222111 1
Q ss_pred eccCcccceeeeeCHHHHHHHHh
Q 017849 203 IRADLMDAHMYAFNRSVLQEVLD 225 (365)
Q Consensus 203 ~~~~l~~~giyi~s~~vl~~~~~ 225 (365)
....+.++..++|+-+.|..+++
T Consensus 287 ~kf~~fNtnn~w~~L~~l~~~~~ 309 (469)
T PLN02474 287 EKFKIFNTNNLWVNLKAIKRLVE 309 (469)
T ss_pred ccceeeeeeeEEEEHHHHHHHhh
Confidence 23467899999999999988764
No 102
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.54 E-value=0.0085 Score=58.24 Aligned_cols=191 Identities=17% Similarity=0.218 Sum_probs=105.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeC-CcchHHHHHHHHHh----CCC-CeEEEEecCcchHHHHHHHHHhhhcCC
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNI-KDLIVVVEGADAALRVGGWISAAYVDR 76 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~-gkplI~~~L~~l~~----~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~ 76 (365)
+.+|+||||.|||| +...||.++||. |+.+++..++.+.. .|+ -..+|.++... .+...+++++++.-.
T Consensus 57 vavl~LaGGlGTrl----G~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~kyfg~~ 131 (420)
T PF01704_consen 57 VAVLKLAGGLGTRL----GCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNT-HEDTRKFLEKYFGLD 131 (420)
T ss_dssp EEEEEEEESBSGCC----TESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTT-HHHHHHHHHHGCGSS
T ss_pred EEEEEEcCcccCcc----CCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCccc-HHHHHHHHHHhcCCC
Confidence 45788999999999 788999999995 45899988888764 232 24566666554 357788888743222
Q ss_pred cceEEEEc----------------CC----------CCChHHHHHHH-----HHHcC---CCcEEEEeCCcccC-CChHH
Q 017849 77 LHVEVATV----------------PE----------DVGTAGALRAI-----AHHLT---AKDVLVVSGDLVSD-VPPGA 121 (365)
Q Consensus 77 ~~v~i~~~----------------~~----------~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~~-~~l~~ 121 (365)
..+.+..| +. +.|.|+..... ++.+. .+++.+.+.|.+.. .|. .
T Consensus 132 ~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp-~ 210 (420)
T PF01704_consen 132 VDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP-V 210 (420)
T ss_dssp CCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H-H
T ss_pred cceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH-H
Confidence 22222111 01 22565533322 22221 36799999997543 454 4
Q ss_pred HHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCCcE-EEEeeccccccccccccHHHHhhcCc
Q 017849 122 VTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF-LLHIATGAELEKDTRIRKSILRAVGQ 200 (365)
Q Consensus 122 ~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-l~~~~~~~~~ek~~~i~~~~l~~~~~ 200 (365)
++..+.++++++.+-+.+... | .+.-|++... +|+. ++.+. .++.+.......
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~--~--------------dek~Gvl~~~-~G~~~vvEys---------qip~~~~~~~~~ 264 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTS--P--------------DEKGGVLCRY-DGKLQVVEYS---------QIPKEHMAEFKD 264 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CS--T--------------TTSSEEEEEE-TTEEEEEEGG---------GS-HHGHHHHTS
T ss_pred HHHHHHhccchhheeeeecCC--C--------------CCceeEEEEe-CCccEEEEec---------cCCHHHHHhhhc
Confidence 788888889888776554321 1 1233555433 3432 22222 223222222111
Q ss_pred ceeccCcccceeeeeCHHHHHHHHhc
Q 017849 201 MDIRADLMDAHMYAFNRSVLQEVLDQ 226 (365)
Q Consensus 201 ~~~~~~l~~~giyi~s~~vl~~~~~~ 226 (365)
. -...+.+++--+|+-..|..+++.
T Consensus 265 ~-~~~~~FntnNi~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 265 I-KGFLLFNTNNIWFSLDFLKRLLER 289 (420)
T ss_dssp T-TTSBEEEEEEEEEEHHHHHHHHHT
T ss_pred c-ccceEEEeceeeEEHHHHHHHHHh
Confidence 0 012445777679999999887654
No 103
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.17 E-value=0.037 Score=54.58 Aligned_cols=191 Identities=12% Similarity=0.161 Sum_probs=107.3
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHhC--------------CC-CeEEEEecCcchHHH
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------------NI-KDLIVVVEGADAALR 64 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~~--------------gi-~~v~vv~~~~~~~~~ 64 (365)
+-+|+||||.|||| ....||.+++|+ ++.+++...+++... ++ =..+|.++... .+.
T Consensus 117 vavvlLAGGqGTRL----G~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T-~~~ 191 (493)
T PLN02435 117 LAVVLLSGGQGTRL----GSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFT-DEA 191 (493)
T ss_pred EEEEEeCCCccccc----CCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcch-hHH
Confidence 45788999999999 889999999885 789999998886321 11 13466666543 356
Q ss_pred HHHHHHhh--hc-CCcceEEEEc---------------------CCCCChHHHHHHH-----HHHcC---CCcEEEEeCC
Q 017849 65 VGGWISAA--YV-DRLHVEVATV---------------------PEDVGTAGALRAI-----AHHLT---AKDVLVVSGD 112 (365)
Q Consensus 65 i~~~~~~~--~~-~~~~v~i~~~---------------------~~~~gt~~al~~~-----~~~i~---~~~~lv~~~D 112 (365)
..+++++. ++ ....+.+..| -.+.|.|+..... ++.+. -+++.+.+.|
T Consensus 192 T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 271 (493)
T PLN02435 192 TRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVD 271 (493)
T ss_pred HHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecc
Confidence 77888752 21 1122332211 1245666543322 22232 2568888888
Q ss_pred cc-c-CCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEE-cCCCcE-EEEeeccccccccc
Q 017849 113 LV-S-DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGM-DPTKQF-LLHIATGAELEKDT 188 (365)
Q Consensus 113 ~i-~-~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-d~~~~~-l~~~~~~~~~ek~~ 188 (365)
.+ . ..|. .++-.+..+++++.+-+.+.. +|. +.-|++.. +.+|+. +..+.+
T Consensus 272 N~L~~~~DP-~flG~~~~~~~d~~~kVv~K~--~~~--------------EkvG~i~~~~~~g~~~vvEYsE-------- 326 (493)
T PLN02435 272 NALVRVADP-TFLGYFIDKGVASAAKVVRKA--YPQ--------------EKVGVFVRRGKGGPLTVVEYSE-------- 326 (493)
T ss_pred cccccccCH-HHHHHHHhcCCceEEEeeecC--CCC--------------CceeEEEEecCCCCEEEEEecc--------
Confidence 63 3 3444 467888888888877543321 121 22355543 234432 223322
Q ss_pred cccHHHHhhc-C-cceeccCcccceeeeeCHHHHHHHH
Q 017849 189 RIRKSILRAV-G-QMDIRADLMDAHMYAFNRSVLQEVL 224 (365)
Q Consensus 189 ~i~~~~l~~~-~-~~~~~~~l~~~giyi~s~~vl~~~~ 224 (365)
++..+-... + .-.+.....+...++|+-+.|..+.
T Consensus 327 -l~~~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~ 363 (493)
T PLN02435 327 -LDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVA 363 (493)
T ss_pred -CCHHHHhccCccccccccchhhHHHhhccHHHHHHHH
Confidence 121111110 0 0123346667788899999888774
No 104
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=97.10 E-value=0.0027 Score=55.10 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=61.2
Q ss_pred CcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCC--CcEEEEe
Q 017849 33 NRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA--KDVLVVS 110 (365)
Q Consensus 33 gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~ 110 (365)
-+|||.|+++.+..+++.+++++++.. .+..+... .++.++..+. .|.+.+++.+.+.+.. +.++++.
T Consensus 29 ~~~ll~~~l~~l~~~~~~~vvvv~~~~----~~~~~~~~-----~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~ 98 (195)
T TIGR03552 29 ALAMLRDVITALRGAGAGAVLVVSPDP----ALLEAARN-----LGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILM 98 (195)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCH----HHHHHHHh-----cCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEe
Confidence 379999999999998888888887732 33343322 2455655443 4899999999876643 3699999
Q ss_pred CC--cccCCChHHHHHHHH
Q 017849 111 GD--LVSDVPPGAVTAAHR 127 (365)
Q Consensus 111 ~D--~i~~~~l~~~l~~h~ 127 (365)
|| ++....++.+++...
T Consensus 99 ~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 99 ADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCCHHHHHHHHHhcc
Confidence 99 466677888887664
No 105
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.038 Score=53.54 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=76.8
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeC-CcchHHHHHHHHHhC----CCC-eEEEEecCcchHHHHHHHHHh--hhc
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELS----NIK-DLIVVVEGADAALRVGGWISA--AYV 74 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~-gkplI~~~L~~l~~~----gi~-~v~vv~~~~~~~~~i~~~~~~--~~~ 74 (365)
+-+|+||||.|+|| ....||.+++|. |+++++.+.+.+..+ +++ ..++-++... +....++.. ++.
T Consensus 106 lAvl~LaGGqGtrl----G~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt--~~t~s~f~~~~Y~~ 179 (472)
T COG4284 106 LAVLKLAGGQGTRL----GCDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNT--EETDSYFKSNDYFG 179 (472)
T ss_pred eEEEEecCCccccc----ccCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCc--HHHHHHHhhhhhcC
Confidence 45789999999999 788999999999 889999988877443 332 3444445332 123333322 111
Q ss_pred -CCcceEEEEc------------------C-----CCCChH---HHHHH--HHHHc-C--CCcEEEEeCCc-ccCCChHH
Q 017849 75 -DRLHVEVATV------------------P-----EDVGTA---GALRA--IAHHL-T--AKDVLVVSGDL-VSDVPPGA 121 (365)
Q Consensus 75 -~~~~v~i~~~------------------~-----~~~gt~---~al~~--~~~~i-~--~~~~lv~~~D~-i~~~~l~~ 121 (365)
++..+.+..| + .+.|.| .+|.. ..+.+ . .+.+.|.+.|. ....|+.
T Consensus 180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~- 258 (472)
T COG4284 180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLK- 258 (472)
T ss_pred CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHH-
Confidence 1111221111 1 123444 34443 22222 2 35688888895 4456764
Q ss_pred HHHHHHhcCCeEEEEEee
Q 017849 122 VTAAHRRHDAVVTAMICS 139 (365)
Q Consensus 122 ~l~~h~~~~a~~t~l~~~ 139 (365)
++..+...+.++++=+..
T Consensus 259 ~lg~~~~~~~e~~~e~t~ 276 (472)
T COG4284 259 FLGFMAETNYEYLMETTD 276 (472)
T ss_pred HHHHHHhcCcceeEEEee
Confidence 677888888888775543
No 106
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.75 E-value=0.13 Score=52.40 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=81.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHhC-----------CC-CeEEEEecCcchHHHHHH
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS-----------NI-KDLIVVVEGADAALRVGG 67 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~~-----------gi-~~v~vv~~~~~~~~~i~~ 67 (365)
+.+|+||||.|||| ....||.++|++ |+++++..++.+... ++ -..+|.++... .+...+
T Consensus 129 vavllLaGGlGTRL----G~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T-~~~T~~ 203 (615)
T PLN02830 129 AAFVLVAGGLGERL----GYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDT-HARTLK 203 (615)
T ss_pred EEEEEecCCccccc----CCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcch-hHHHHH
Confidence 45789999999999 788999999984 789999999997543 11 23566666543 356777
Q ss_pred HHHh--hhc-CCcceEEEEc----------------C--------CCCChHHHHHHH-----HHHcC---CCcEEEEeCC
Q 017849 68 WISA--AYV-DRLHVEVATV----------------P--------EDVGTAGALRAI-----AHHLT---AKDVLVVSGD 112 (365)
Q Consensus 68 ~~~~--~~~-~~~~v~i~~~----------------~--------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D 112 (365)
++++ +++ .+..+.+..| + .+.|.|+..... ++.+. .+++.+.+.|
T Consensus 204 ~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vD 283 (615)
T PLN02830 204 LLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDT 283 (615)
T ss_pred HHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEecc
Confidence 7775 221 1112222111 1 134555433322 22221 2567888888
Q ss_pred c--ccCCChHHHHHHHHhcCCeEEEEEeee
Q 017849 113 L--VSDVPPGAVTAAHRRHDAVVTAMICSV 140 (365)
Q Consensus 113 ~--i~~~~l~~~l~~h~~~~a~~t~l~~~~ 140 (365)
. +...+ -.++-.+..+++++.+.+.+.
T Consensus 284 N~L~~~Ad-p~flG~~~~~~~d~~~kvv~K 312 (615)
T PLN02830 284 NGLVFKAI-PAALGVSATKGFDMNSLAVPR 312 (615)
T ss_pred chhhhccc-HHHhHHHHhcCCceEEEEEEC
Confidence 4 22334 567888888899888766543
No 107
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.72 E-value=0.047 Score=43.78 Aligned_cols=97 Identities=21% Similarity=0.132 Sum_probs=65.1
Q ss_pred eceeCCc-chHHHHHHHHHhCC--CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~ 104 (365)
++|..|+ +++..+++++.+.+ ..+++|+.+... +...+.+...................|.+.++..+.+....+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d 79 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGST--DGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARGE 79 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCC--ccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhcCC
Confidence 4566665 99999999999987 678888877543 234444443221112234444556788899998888877667
Q ss_pred cEEEEeCCcccCCC-hHHHHHHH
Q 017849 105 DVLVVSGDLVSDVP-PGAVTAAH 126 (365)
Q Consensus 105 ~~lv~~~D~i~~~~-l~~~l~~h 126 (365)
.++++.+|.+...+ +..++..+
T Consensus 80 ~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 80 YILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred EEEEECCCCccCccHHHHHHHHH
Confidence 89999999877665 44443443
No 108
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=96.70 E-value=0.0055 Score=56.98 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=48.4
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceecee---CCcchHHHHHHHHHhC--------CC-CeEEEEecCcchHHHHHHHHHh
Q 017849 4 QVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELS--------NI-KDLIVVVEGADAALRVGGWISA 71 (365)
Q Consensus 4 ~avIlA~G~g~rl~pL~t~~~pK~llpv---~gkplI~~~L~~l~~~--------gi-~~v~vv~~~~~~~~~i~~~~~~ 71 (365)
.+|+||||.|||| ....||.++|+ .|+++++..++++... +. -..+|.++... .+...+++++
T Consensus 2 a~vllaGG~GTRL----G~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~T-h~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGGLGERL----GYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDT-HSKTLKLLEE 76 (315)
T ss_pred EEEEecCCCcccc----CCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCch-hHHHHHHHHH
Confidence 4789999999999 88999999999 4889999999988542 21 24566776544 3577788874
No 109
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=95.98 E-value=0.14 Score=42.01 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=72.7
Q ss_pred eceeCCc-chHHHHHHHHHhC--CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849 28 LLPVANR-PVLSYVLEQLELS--NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~--gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~ 104 (365)
.+|.-|+ ..|..+|+.+.+. ...+|+|+-+... +...+.+.++......+.++..+...|.+.++..+.+....+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~ 80 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGST--DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGE 80 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S--SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SS
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccc--ccccccccccccccccccccccccccccccccccccccccee
Confidence 4677676 7889999988776 3457777765431 233444444322234678887777778889999998888778
Q ss_pred cEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEEE
Q 017849 105 DVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAMI 137 (365)
Q Consensus 105 ~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l~ 137 (365)
.++++..|.+...+ +..+++.+.+.+.++.+..
T Consensus 81 ~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 81 YILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 89999999766555 8889999888777655443
No 110
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=95.73 E-value=0.0052 Score=54.97 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=20.7
Q ss_pred EEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 017849 304 VYIASNSKYCVRLNSIQAFMDINRDVIGEA 333 (365)
Q Consensus 304 ~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~~ 333 (365)
+|.+ +|||..+ .+|.++|+++|+..
T Consensus 42 ~~~~--~gyW~Di---~~yl~an~diL~~~ 66 (231)
T TIGR03532 42 SGVL--FGEWEDI---EPFIEANKDKIKDY 66 (231)
T ss_pred cEEE--EEeHHHH---HHHHHHhHhhhcce
Confidence 4555 7899888 99999999999763
No 111
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=92.97 E-value=2.7 Score=37.45 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=68.0
Q ss_pred CCCCCc--eeceeCCc-chHHHHHHHHHhCCC----CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHH
Q 017849 21 SKEVPK--ALLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGA 93 (365)
Q Consensus 21 t~~~pK--~llpv~gk-plI~~~L~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~a 93 (365)
....|+ -++|.-|. ..|..+|+.+..... -+++|+.+... +...+.++... .. .+.++..+...|-+.+
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~-~~-~v~~i~~~~~~g~~~a 100 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGST--DGTAEIAREYA-DK-GVKLLRFPERRGKAAA 100 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC--ccHHHHHHHHh-hC-cEEEEEcCCCCChHHH
Confidence 455555 56777776 788888888866542 25777665332 23344444321 11 4666665666788888
Q ss_pred HHHHHHHcCCCcEEEEeCCcccCCC-hHHHHHHHHh
Q 017849 94 LRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRR 128 (365)
Q Consensus 94 l~~~~~~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~ 128 (365)
+..+.+....+.++++.+|.+...+ +..+++....
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcC
Confidence 8888887777789999999766544 7777777643
No 112
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=92.97 E-value=1.4 Score=37.08 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=64.9
Q ss_pred ceeCCc-chHHHHHHHHHhC----CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCC
Q 017849 29 LPVANR-PVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (365)
Q Consensus 29 lpv~gk-plI~~~L~~l~~~----gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~ 103 (365)
+|..+. ..|..+|+.+.+. ...+|+|+-+... +...+.+.........+.++..+...|.+.++..+.+....
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~--d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~g 80 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGST--DGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAARG 80 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCC--CChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhcC
Confidence 455555 5677788888666 2567777754321 12333333321111134555556678888888888887777
Q ss_pred CcEEEEeCCcccCC-ChHHHHHHHHhcCCeEEEE
Q 017849 104 KDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTAM 136 (365)
Q Consensus 104 ~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~t~l 136 (365)
+.++++.+|..... -+..++......+.++.+.
T Consensus 81 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 81 DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 78999999965443 4778887755556655443
No 113
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.85 E-value=3 Score=33.98 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=64.0
Q ss_pred eceeCCc-chHHHHHHHHHhCC--CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~ 104 (365)
++|.-|+ ..|..+++.+.+.. ..+++|+.+... +...+.+..... .+.++..+...|.+.++..+.+....+
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~--~~~~~~~~~~~~---~~~~~~~~~~~g~~~a~n~~~~~~~~~ 76 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNAST--DGSVELLRELFP---EVRLIRNGENLGFGAGNNQGIREAKGD 76 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCC--chHHHHHHHhCC---CeEEEecCCCcChHHHhhHHHhhCCCC
Confidence 3566565 78999999997763 456777665332 233444443211 355665566788999998888888767
Q ss_pred cEEEEeCCcccCCC-hHHHHHHHHhc
Q 017849 105 DVLVVSGDLVSDVP-PGAVTAAHRRH 129 (365)
Q Consensus 105 ~~lv~~~D~i~~~~-l~~~l~~h~~~ 129 (365)
.++++..|.+...+ +..+++.+.+.
T Consensus 77 ~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 77 YVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred EEEEECCCcEECccHHHHHHHHHHhC
Confidence 78888888666544 67777765543
No 114
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=91.70 E-value=2.6 Score=36.60 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=63.9
Q ss_pred eceeCCc-chHHHHHHHHHhCC---CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCC
Q 017849 28 LLPVANR-PVLSYVLEQLELSN---IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~g---i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~ 103 (365)
++|.-|. ..|..+|+.+.+.- --+|+||-+... +...+.+.++......+.++......|-+.++..+.+....
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~--d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a~g 79 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSP--DGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAARG 79 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--CChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHcCC
Confidence 3566565 67888888886543 246677654321 22233333221111234555556678888999888887777
Q ss_pred CcEEEEeCCcccCC-ChHHHHHHHHhcCCeEE
Q 017849 104 KDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVT 134 (365)
Q Consensus 104 ~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~t 134 (365)
+.++++.+|..... .+..+++.....+.++.
T Consensus 80 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 80 DVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 78899999965544 47777777555555443
No 115
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=91.60 E-value=4.8 Score=34.25 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=63.4
Q ss_pred eceeCCc---chHHHHHHHHHhCCC--CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC
Q 017849 28 LLPVANR---PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (365)
Q Consensus 28 llpv~gk---plI~~~L~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~ 102 (365)
++|+.++ ..|..+|+.+..... .+++|+-.... .+...+.+..+. .+.++.++..+...|.+.+...+.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss-~d~t~~~~~~~~-~~~~i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPV-TQSLNEVLEEFK-RKLPLKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCC-chhHHHHHHHHH-hcCCeEEEEcCccccHHHHHHHHHHhcC
Confidence 4677665 389999999977642 46666644321 234444444322 1234666655566888888888887776
Q ss_pred CCcEEEEeCCcccC-CChHHHHHHHHh
Q 017849 103 AKDVLVVSGDLVSD-VPPGAVTAAHRR 128 (365)
Q Consensus 103 ~~~~lv~~~D~i~~-~~l~~~l~~h~~ 128 (365)
.+.++++.+|.+.. .-+..+++...+
T Consensus 81 gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 81 YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 67789999996554 447777777644
No 116
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=91.45 E-value=2.3 Score=36.86 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=62.4
Q ss_pred ceeCCc-chHHHHHHHHHhC------CCCeEEEEecCcchHHHHHHHHHhhhcC-CcceEEEEcCCCCChHHHHHHHHHH
Q 017849 29 LPVANR-PVLSYVLEQLELS------NIKDLIVVVEGADAALRVGGWISAAYVD-RLHVEVATVPEDVGTAGALRAIAHH 100 (365)
Q Consensus 29 lpv~gk-plI~~~L~~l~~~------gi~~v~vv~~~~~~~~~i~~~~~~~~~~-~~~v~i~~~~~~~gt~~al~~~~~~ 100 (365)
+|.-|. .-|..+|+.+.+. ..-+|+|+-+... +...+.++.+... ...+.++......|.+.++..+.+.
T Consensus 3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~--D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~ 80 (211)
T cd04188 3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSK--DGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLA 80 (211)
T ss_pred EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC--CchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHH
Confidence 455554 5666677776543 2346776644321 1222333322110 1113555555668899999989887
Q ss_pred cCCCcEEEEeCCcccC-CChHHHHHHHHhcCCeEEEE
Q 017849 101 LTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDAVVTAM 136 (365)
Q Consensus 101 i~~~~~lv~~~D~i~~-~~l~~~l~~h~~~~a~~t~l 136 (365)
...+.++++.+|...+ ..+..+++.....+.++.+.
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 7778899999996554 45777877755555555443
No 117
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=91.30 E-value=4.3 Score=36.06 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=64.0
Q ss_pred eceeCCc-chHHHHHHHHHhCCCC----eEEEEecCcchHHHHHHHHHhhhcCCcceEEEE--cCCCCChHHHHHHHHHH
Q 017849 28 LLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVAT--VPEDVGTAGALRAIAHH 100 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~--~~~~~gt~~al~~~~~~ 100 (365)
++|.-|. ..|..+|+.+.+.... +|+|+..... +...+.+..+.. .....++. .....|-+.++..+.+.
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~--d~t~~i~~~~~~-~~~~~i~~~~~~~~~G~~~a~n~g~~~ 82 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDD--EETIAAARALRL-PSIFRVVVVPPSQPRTKPKACNYALAF 82 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCC--chHHHHHHHhcc-CCCeeEEEecCCCCCchHHHHHHHHHh
Confidence 4566565 6788888888765432 4666654321 233334443211 11233333 23456788898888887
Q ss_pred cCCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 017849 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (365)
Q Consensus 101 i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l 136 (365)
...+.++++.+|.+...+ +..+++.+.+.+.++.++
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 777789999999766554 778888776544555544
No 118
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=91.09 E-value=4 Score=33.11 Aligned_cols=99 Identities=22% Similarity=0.206 Sum_probs=61.3
Q ss_pred eceeCCc-chHHHHHHHHHhCC--CCeEEEEecCcchHHHHHHHHHhhhcCC-cceEEEEcCCCCChHHHHHHHHHHcCC
Q 017849 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDR-LHVEVATVPEDVGTAGALRAIAHHLTA 103 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~-~~v~i~~~~~~~gt~~al~~~~~~i~~ 103 (365)
.+|.-|+ ..|..+|+.+.+.. ..+++|+-+... +...+.+..+.... ..+.+.......|.+.++..+.+....
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~ 79 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGST--DDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKG 79 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCc--cchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCC
Confidence 3566665 78899999998775 346666654332 22333343322111 123344445668888888888888777
Q ss_pred CcEEEEeCCcccCCC-hHHHHHHHHh
Q 017849 104 KDVLVVSGDLVSDVP-PGAVTAAHRR 128 (365)
Q Consensus 104 ~~~lv~~~D~i~~~~-l~~~l~~h~~ 128 (365)
+.++++.+|.+...+ +..++..+.+
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhcc
Confidence 789999999655544 6666455544
No 119
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=90.71 E-value=3.8 Score=36.10 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=61.9
Q ss_pred eceeCCc-chHHHHHHHHHhCCC----CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC
Q 017849 28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~ 102 (365)
++|.-|+ +.|..+|+.+..... -+|+|+-+... +...+.++........+.++. ....|-+.++..+++...
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~--d~~~~~~~~~~~~~~~v~~i~-~~~~~~~~a~N~g~~~a~ 81 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGST--DGTREIVQEYAAKDPRIRLID-NPKRIQSAGLNIGIRNSR 81 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCC--ccHHHHHHHHHhcCCeEEEEe-CCCCCchHHHHHHHHHhC
Confidence 4555555 778888999976654 36777654332 233444443221112344443 234566677777777776
Q ss_pred CCcEEEEeCCcccCCC-hHHHHHHHHhcCCeE
Q 017849 103 AKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVV 133 (365)
Q Consensus 103 ~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~ 133 (365)
.+.++++.+|.+...+ +..+++.+...+.++
T Consensus 82 ~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~ 113 (249)
T cd02525 82 GDIIIRVDAHAVYPKDYILELVEALKRTGADN 113 (249)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHhcCCCCE
Confidence 6788999999655444 778887666555544
No 120
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=90.59 E-value=5.7 Score=33.77 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=61.5
Q ss_pred ceeCC-c-chHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849 29 LPVAN-R-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (365)
Q Consensus 29 lpv~g-k-plI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~ 104 (365)
+|.-| . ..|..+|+.+.+.-.. +|+|+-+... ...+...+.........+.++..+...|.+.++-.+.+....+
T Consensus 7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~-d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d 85 (202)
T cd04184 7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDAST-DPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELATGE 85 (202)
T ss_pred EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCC-ChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhcCC
Confidence 44433 4 7788888888765433 6666654321 1123333332111112355555566678888888887777667
Q ss_pred cEEEEeCCcccCCC-hHHHHHHH-HhcCCe
Q 017849 105 DVLVVSGDLVSDVP-PGAVTAAH-RRHDAV 132 (365)
Q Consensus 105 ~~lv~~~D~i~~~~-l~~~l~~h-~~~~a~ 132 (365)
.++++.+|.+...+ +..+++.+ ...+.+
T Consensus 86 ~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~ 115 (202)
T cd04184 86 FVALLDHDDELAPHALYEVVKALNEHPDAD 115 (202)
T ss_pred EEEEECCCCcCChHHHHHHHHHHHhCCCCC
Confidence 78889999666544 77888776 333443
No 121
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=89.26 E-value=9.3 Score=35.22 Aligned_cols=101 Identities=16% Similarity=0.055 Sum_probs=63.1
Q ss_pred ceeCCc--chHHHHHHHHHhCCC----CeEEEEecCcchHHHHHHHHHhhh--cCCcceEEEEcCCCCChHHHHHHHHHH
Q 017849 29 LPVANR--PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAY--VDRLHVEVATVPEDVGTAGALRAIAHH 100 (365)
Q Consensus 29 lpv~gk--plI~~~L~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~--~~~~~v~i~~~~~~~gt~~al~~~~~~ 100 (365)
+|.-|. ..|..+|+.+....- .+|+||-+... +...+.+.... .....+.++..+...|-+.+.-.+++.
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~--d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~ 81 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSD--KPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARA 81 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC--chHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 455554 488888998865432 37777765332 12222221100 011246676666678888888778777
Q ss_pred cCCCcEEEEeCCcccCC-ChHHHHHHHHhcCC
Q 017849 101 LTAKDVLVVSGDLVSDV-PPGAVTAAHRRHDA 131 (365)
Q Consensus 101 i~~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a 131 (365)
...+.++++++|.+... -+..+++...+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 77788999999976544 48888888766544
No 122
>PRK10073 putative glycosyl transferase; Provisional
Probab=88.95 E-value=5.3 Score=37.65 Aligned_cols=105 Identities=17% Similarity=0.105 Sum_probs=65.1
Q ss_pred eceeCCc-chHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849 28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~ 104 (365)
.+|+-|. ..|..+|+.+...... +|+|+-.... +...+.+..+......+.++.+ +..|.+.|.-.+++....+
T Consensus 11 IIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgSt--D~t~~i~~~~~~~~~~i~vi~~-~n~G~~~arN~gl~~a~g~ 87 (328)
T PRK10073 11 IIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGST--DNSVEIAKHYAENYPHVRLLHQ-ANAGVSVARNTGLAVATGK 87 (328)
T ss_pred EEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCC--ccHHHHHHHHHhhCCCEEEEEC-CCCChHHHHHHHHHhCCCC
Confidence 4666665 7999999999876543 5666643221 1222333322111123555543 4578888877788877778
Q ss_pred cEEEEeCCcc-cCCChHHHHHHHHhcCCeEEE
Q 017849 105 DVLVVSGDLV-SDVPPGAVTAAHRRHDAVVTA 135 (365)
Q Consensus 105 ~~lv~~~D~i-~~~~l~~~l~~h~~~~a~~t~ 135 (365)
+++++.+|-. .+.-+..+++...+.+.++.+
T Consensus 88 yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 88 YVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred EEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 8999999954 444577788777666666654
No 123
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=88.61 E-value=6.3 Score=33.01 Aligned_cols=102 Identities=22% Similarity=0.205 Sum_probs=57.3
Q ss_pred ceeCCc-chHHHHHHHHHhC-----CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC
Q 017849 29 LPVANR-PVLSYVLEQLELS-----NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (365)
Q Consensus 29 lpv~gk-plI~~~L~~l~~~-----gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~ 102 (365)
+|.-|. ..|..+|+.+... ..-+|+|+-+... +...+.++........+.++......|.+.++..++....
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a~ 80 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGST--DRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHAR 80 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCC--ccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhcC
Confidence 444444 3455555554321 2236777755322 1222333322111123555555556788899988888777
Q ss_pred CCcEEEEeCCcccCCC-hHHHHHHHHhcCCeE
Q 017849 103 AKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVV 133 (365)
Q Consensus 103 ~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~ 133 (365)
.+.++++.+|.....+ +..+++. .+.+.++
T Consensus 81 ~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~ 111 (181)
T cd04187 81 GDAVITMDADLQDPPELIPEMLAK-WEEGYDV 111 (181)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcE
Confidence 7889999999766544 6777776 3444444
No 124
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.53 E-value=7.6 Score=32.63 Aligned_cols=95 Identities=18% Similarity=0.081 Sum_probs=58.3
Q ss_pred ceeCCc-chHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCCc
Q 017849 29 LPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (365)
Q Consensus 29 lpv~gk-plI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~ 105 (365)
+|.-|+ ..|..+|+.+.+.... +|+|+-+... +...+.+.... . .+..+......|.+.++..+++....+.
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~--d~~~~~~~~~~-~--~~~~~~~~~~~g~~~a~n~~~~~a~~~~ 78 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGST--DGTVDIIKKYE-D--KITYWISEPDKGIYDAMNKGIALATGDI 78 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCC--ccHHHHHHHhH-h--hcEEEEecCCcCHHHHHHHHHHHcCCCE
Confidence 455454 6889999999776554 5666643221 23334444321 1 1223333456788888888888877778
Q ss_pred EEEEeCCccc-CCChHHHHHHHHh
Q 017849 106 VLVVSGDLVS-DVPPGAVTAAHRR 128 (365)
Q Consensus 106 ~lv~~~D~i~-~~~l~~~l~~h~~ 128 (365)
++++.+|.+. +..+..++.....
T Consensus 79 v~~ld~D~~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 79 IGFLNSDDTLLPGALLAVVAAFAE 102 (202)
T ss_pred EEEeCCCcccCchHHHHHHHHHHh
Confidence 8999998644 4557777744443
No 125
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=87.44 E-value=9.3 Score=37.63 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=64.3
Q ss_pred eeceeCCc-chHHHHHHHHHhCCC--CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCC
Q 017849 27 ALLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (365)
Q Consensus 27 ~llpv~gk-plI~~~L~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~ 103 (365)
-++|.-|. ..|..+++.+.+..- -+|+|+.+... +...+.+.+.......+.++..+...|-+.++..+......
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~--D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl~~a~~ 156 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSS--DDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGAAAARS 156 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHHHhCCC
Confidence 56788887 778899999876643 36777754322 12223332221111246666555667888899888877767
Q ss_pred CcEEEEeCCcccCCC-hHHHHHHHHh
Q 017849 104 KDVLVVSGDLVSDVP-PGAVTAAHRR 128 (365)
Q Consensus 104 ~~~lv~~~D~i~~~~-l~~~l~~h~~ 128 (365)
+.++++.+|.+.+.+ +..+++.+.+
T Consensus 157 d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 157 EYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred CEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 789999999776655 6777766644
No 126
>PRK11204 N-glycosyltransferase; Provisional
Probab=87.14 E-value=8.2 Score=37.55 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=63.5
Q ss_pred eceeCCc-chHHHHHHHHHhCCC--CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849 28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~ 104 (365)
++|.-|. ..|..+++.+.+... -+|+|+-+... +...+.++........+.++..++..|-++++..+.+....+
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~--d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~~~a~~d 136 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSS--DNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGAAAARSE 136 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5676676 789999999877653 36666654321 122233322111112366665456678889999888877777
Q ss_pred cEEEEeCCcccCCC-hHHHHHHHHh
Q 017849 105 DVLVVSGDLVSDVP-PGAVTAAHRR 128 (365)
Q Consensus 105 ~~lv~~~D~i~~~~-l~~~l~~h~~ 128 (365)
.++++.+|.+...+ +..+++.+.+
T Consensus 137 ~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 137 YLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred EEEEECCCCCCChhHHHHHHHHHHh
Confidence 89999999766554 7777777654
No 127
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=86.93 E-value=12 Score=36.91 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=62.1
Q ss_pred eceeCCc-chHHHHHHHHHhCCCC----eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC
Q 017849 28 LLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~ 102 (365)
++|.-|. ..|..+++.+.+.... +|+|+-+... +...+.+++.......+.+...+...|-+.|+-.+.+...
T Consensus 54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~St--D~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl~~s~ 131 (439)
T TIGR03111 54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQST--DDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYNSI 131 (439)
T ss_pred EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCC--hhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHcc
Confidence 4676665 8899999999776542 4666544221 2223333221111123444444556788899999988777
Q ss_pred CCcEEEEeCCcccCCC-hHHHHHHHHh
Q 017849 103 AKDVLVVSGDLVSDVP-PGAVTAAHRR 128 (365)
Q Consensus 103 ~~~~lv~~~D~i~~~~-l~~~l~~h~~ 128 (365)
.+.++++.+|.+.+.+ +..+++.+.+
T Consensus 132 g~~v~~~DaD~~~~~d~L~~l~~~f~~ 158 (439)
T TIGR03111 132 GKYIIHIDSDGKLHKDAIKNMVTRFEN 158 (439)
T ss_pred CCEEEEECCCCCcChHHHHHHHHHHHh
Confidence 7789999999776655 6777777754
No 128
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=86.82 E-value=8.9 Score=34.10 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=61.4
Q ss_pred eceeCCc-chHHHHHHHHHhC----CCCeEEEEecCcchHHHHHHHHHhhhcC--CcceEEEEcCCCCChHHHHHHHHHH
Q 017849 28 LLPVANR-PVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVD--RLHVEVATVPEDVGTAGALRAIAHH 100 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~----gi~~v~vv~~~~~~~~~i~~~~~~~~~~--~~~v~i~~~~~~~gt~~al~~~~~~ 100 (365)
.+|.-|. .-|..+++.+.+. .--+|+|+-+... +...+.+..+... ...+.++..+...|-+.++..+...
T Consensus 14 vIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~--D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~ 91 (243)
T PLN02726 14 IVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSP--DGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKH 91 (243)
T ss_pred EEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCC--CCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 4555554 5666666666432 1126666654221 1223333322110 1234444445567888888888877
Q ss_pred cCCCcEEEEeCCcccCC-ChHHHHHHHHhcCCeEEE
Q 017849 101 LTAKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTA 135 (365)
Q Consensus 101 i~~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~t~ 135 (365)
...+.++++.+|...+. .+..+++...+.++++..
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 127 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT 127 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 76778999999976554 477888777666666544
No 129
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=85.68 E-value=17 Score=31.84 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=55.2
Q ss_pred eceeCCc-chHHHHHHHHHhCCCC----eEEEEecCcchH-HHHHHHHHhhhcCCcceEEEEcCCCCC-hHHHHHHHHHH
Q 017849 28 LLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADAA-LRVGGWISAAYVDRLHVEVATVPEDVG-TAGALRAIAHH 100 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi~----~v~vv~~~~~~~-~~i~~~~~~~~~~~~~v~i~~~~~~~g-t~~al~~~~~~ 100 (365)
.+|.-|. ..|..+|+.+.+.... +|+|+-+..+.. +.+.++...+......+..+...+..| .+.++..+.+.
T Consensus 6 iIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~ 85 (232)
T cd06437 6 QLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKV 85 (232)
T ss_pred EEecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHh
Confidence 4566565 7889999999765432 454543322211 122333332211122344444344455 46777777777
Q ss_pred cCCCcEEEEeCCcccCCC-hHHHHHH
Q 017849 101 LTAKDVLVVSGDLVSDVP-PGAVTAA 125 (365)
Q Consensus 101 i~~~~~lv~~~D~i~~~~-l~~~l~~ 125 (365)
...+.++++.+|.+...+ +..+...
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhh
Confidence 777889999999776654 5554433
No 130
>PRK10018 putative glycosyl transferase; Provisional
Probab=85.34 E-value=23 Score=32.50 Aligned_cols=99 Identities=9% Similarity=0.083 Sum_probs=62.4
Q ss_pred eceeCCc-chHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849 28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~ 104 (365)
.+|.-|. ..|..+|+.+.+.... +++|+-+.....+.+.++.... . ...+.++..+...|.+.+.-.+++....+
T Consensus 10 Iip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~-~-~~ri~~i~~~~n~G~~~a~N~gi~~a~g~ 87 (279)
T PRK10018 10 YMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTAL-N-DPRITYIHNDINSGACAVRNQAIMLAQGE 87 (279)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHc-C-CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3565565 7788899888766543 5666644222112344444431 1 12466666566788888888888877778
Q ss_pred cEEEEeCCcccC-CChHHHHHHHHh
Q 017849 105 DVLVVSGDLVSD-VPPGAVTAAHRR 128 (365)
Q Consensus 105 ~~lv~~~D~i~~-~~l~~~l~~h~~ 128 (365)
.++++.+|.+.. ..+..+++...+
T Consensus 88 ~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 88 YITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHh
Confidence 899999996554 447777776543
No 131
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.44 E-value=15 Score=31.69 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=58.5
Q ss_pred eceeCCc-chHHHHHHHHHhCCC----CeEEEEecCcchHHHHHHHHH-hhhcCCcceEEEEcC--CCCChHHHHHHHHH
Q 017849 28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWIS-AAYVDRLHVEVATVP--EDVGTAGALRAIAH 99 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~-~~~~~~~~v~i~~~~--~~~gt~~al~~~~~ 99 (365)
++|..|+ ..|..+|+.+..... -+|+|+-+... +...+.+. ........+.++..+ ...|-+.++..+..
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~ 79 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHST--DGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIK 79 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCC--cChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHH
Confidence 4566666 678899999866532 35666654321 12223332 110111234444333 23566677777777
Q ss_pred HcCCCcEEEEeCCcccCCC-hHHHHHHHHhcCC
Q 017849 100 HLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDA 131 (365)
Q Consensus 100 ~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a 131 (365)
....+.++++.+|.+...+ ++.+++.+...+.
T Consensus 80 ~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 80 AAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred HhcCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 6666789999999766544 6777776655443
No 132
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=84.39 E-value=0.3 Score=29.47 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=14.0
Q ss_pred CCCCccCCCceeCCcccccCCC
Q 017849 343 AQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 343 ~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
..++.|.++|.||+++.||+++
T Consensus 11 ~~~~~i~~~~~Ig~~~~I~~~~ 32 (36)
T PF00132_consen 11 GPNAVIGGGVVIGDNCVIGPGV 32 (36)
T ss_dssp ETTEEEETTEEE-TTEEEETTE
T ss_pred CCCcEecCCCEECCCCEEcCCC
Confidence 3455667777777777777764
No 133
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=83.34 E-value=21 Score=31.16 Aligned_cols=96 Identities=21% Similarity=0.190 Sum_probs=60.3
Q ss_pred eceeCC-c-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCCc
Q 017849 28 LLPVAN-R-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (365)
Q Consensus 28 llpv~g-k-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~ 105 (365)
++|.-| . +.|..+|+.+.+....+|+|+..... +...+.+.... ....+.+.. ....|-+.++..++.....+.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~--d~~~~~l~~~~-~~~~~~v~~-~~~~g~~~a~n~g~~~a~~d~ 80 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDD--EPYLSILSQTV-KYGGIFVIT-VPHPGKRRALAEGIRHVTTDI 80 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCC--hHHHHHHHhhc-cCCcEEEEe-cCCCChHHHHHHHHHHhCCCE
Confidence 345444 3 68999999997765567777766432 23333332211 112343443 345677788877777776778
Q ss_pred EEEEeCCcccCCC-hHHHHHHHH
Q 017849 106 VLVVSGDLVSDVP-PGAVTAAHR 127 (365)
Q Consensus 106 ~lv~~~D~i~~~~-l~~~l~~h~ 127 (365)
++++.+|.+...+ +..+++.+.
T Consensus 81 v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 81 VVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred EEEECCCceeChhHHHHHHHhcc
Confidence 9999999766655 777777765
No 134
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=83.17 E-value=26 Score=30.18 Aligned_cols=106 Identities=13% Similarity=0.168 Sum_probs=65.0
Q ss_pred CcchHHHHHHHH-HhCCCC-eEEEEecC-cchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEE
Q 017849 33 NRPVLSYVLEQL-ELSNIK-DLIVVVEG-ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVV 109 (365)
Q Consensus 33 gkplI~~~L~~l-~~~gi~-~v~vv~~~-~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~ 109 (365)
|-|++-|.+..+ .+.|.+ +++++-.. .+-...+.+.+...++. .++.+..-....|.+.|...++.+...+.++++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~-d~i~l~pR~~klGLgtAy~hgl~~a~g~fiviM 95 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE-DNILLKPRTKKLGLGTAYIHGLKHATGDFIVIM 95 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC-CcEEEEeccCcccchHHHHhhhhhccCCeEEEE
Confidence 447777777776 455665 45555331 11112333444433321 245454445668888888999888876778888
Q ss_pred eCCcccC-CChHHHHHHHHhcCCeEEEEEee
Q 017849 110 SGDLVSD-VPPGAVTAAHRRHDAVVTAMICS 139 (365)
Q Consensus 110 ~~D~i~~-~~l~~~l~~h~~~~a~~t~l~~~ 139 (365)
.+|+-.. .-+.++++..++.+-+++..++-
T Consensus 96 DaDlsHhPk~ipe~i~lq~~~~~div~GTRY 126 (238)
T KOG2978|consen 96 DADLSHHPKFIPEFIRLQKEGNYDIVLGTRY 126 (238)
T ss_pred eCccCCCchhHHHHHHHhhccCcceeeeeeE
Confidence 9997543 44678888877766677766543
No 135
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=82.72 E-value=21 Score=33.66 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=61.7
Q ss_pred ceeCCc-chHHHHHHHHHhC----------CCCeEEEEecCc-chHHHH-HHHHHhhhcCCcceEEEEcCCCCChHHHHH
Q 017849 29 LPVANR-PVLSYVLEQLELS----------NIKDLIVVVEGA-DAALRV-GGWISAAYVDRLHVEVATVPEDVGTAGALR 95 (365)
Q Consensus 29 lpv~gk-plI~~~L~~l~~~----------gi~~v~vv~~~~-~~~~~i-~~~~~~~~~~~~~v~i~~~~~~~gt~~al~ 95 (365)
+|.-|. +-|..+|+.+.+. +--+|+||-+.. +....+ .++.........++.++..+...|.+.|+.
T Consensus 76 IP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~ 155 (333)
T PTZ00260 76 IPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVR 155 (333)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHH
Confidence 565564 6677777766431 124677775422 211122 222221100112466666566789999999
Q ss_pred HHHHHcCCCcEEEEeCCcccC-CChHHHHHHHHh---cCCeEEEE
Q 017849 96 AIAHHLTAKDVLVVSGDLVSD-VPPGAVTAAHRR---HDAVVTAM 136 (365)
Q Consensus 96 ~~~~~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~---~~a~~t~l 136 (365)
.+......+.++++.+|...+ .++..+++...+ .+.++.+.
T Consensus 156 ~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~G 200 (333)
T PTZ00260 156 IGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFG 200 (333)
T ss_pred HHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEe
Confidence 888776667789999997655 456667666543 45554443
No 136
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=82.63 E-value=1.4 Score=42.92 Aligned_cols=38 Identities=29% Similarity=0.547 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCceeceeCC---cchHHHHHHHH
Q 017849 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN---RPVLSYVLEQL 44 (365)
Q Consensus 3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~g---kplI~~~L~~l 44 (365)
..++++|||.|||+ ....||.+.+++- +.++++..+.+
T Consensus 98 ~a~~llaGgqgtRL----g~~~pkg~~~~G~~~~~slf~~qae~i 138 (477)
T KOG2388|consen 98 VAVVLLAGGQGTRL----GSSGPKGCYPIGLPSGKSLFQIQAERI 138 (477)
T ss_pred ceEEEeccCceeee----ccCCCcceeecCCccccchhhhhHHHH
Confidence 46899999999999 7889999999984 45777665554
No 137
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=81.79 E-value=21 Score=32.49 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=58.8
Q ss_pred chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHc---CCCcEEEEeC
Q 017849 35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---TAKDVLVVSG 111 (365)
Q Consensus 35 plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i---~~~~~lv~~~ 111 (365)
..|..+++.+.+. ..+|+||=+.....+.+.+.+.. ...+.++..++..|-+.|...+++.. ..+.++++..
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~ 82 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQ 82 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECC
Confidence 4677778887765 45777775542111234433332 12466776667789888888877655 3467999999
Q ss_pred CcccCCC-hHHHHHHHHhcCCeEEE
Q 017849 112 DLVSDVP-PGAVTAAHRRHDAVVTA 135 (365)
Q Consensus 112 D~i~~~~-l~~~l~~h~~~~a~~t~ 135 (365)
|.+...+ +..+++...+.+..+.+
T Consensus 83 D~~~~~~~l~~l~~~~~~~~~~~~~ 107 (281)
T TIGR01556 83 DSRPGNAFLAAQWKLLSAENGQACA 107 (281)
T ss_pred CCCCCHHHHHHHHHHHHhcCCceEE
Confidence 9766544 66777766544323333
No 138
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=81.63 E-value=30 Score=28.97 Aligned_cols=99 Identities=23% Similarity=0.215 Sum_probs=58.1
Q ss_pred eceeCCc-chHHHHHHHHHhCCC----CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC
Q 017849 28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~ 102 (365)
++|.-|. ..|.-+|+.+.+... -+|+|+..... +...+.+... . ..+.........|.+.++..+.....
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~--D~t~~~~~~~-~--~~~~~~~~~~~~gk~~aln~g~~~a~ 76 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT--DDTAQVARAA-G--ATVLERHDPERRGKGYALDFGFRHLL 76 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC--chHHHHHHHc-C--CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 4666665 788888888876543 35666655332 2333444332 1 11212112334677888887766542
Q ss_pred -----CCcEEEEeCCcccCCC-hHHHHHHHHhcCCe
Q 017849 103 -----AKDVLVVSGDLVSDVP-PGAVTAAHRRHDAV 132 (365)
Q Consensus 103 -----~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~ 132 (365)
.+.++++.+|...+.+ +..++..+.. +.+
T Consensus 77 ~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~ 111 (183)
T cd06438 77 NLADDPDAVVVFDADNLVDPNALEELNARFAA-GAR 111 (183)
T ss_pred hcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCC
Confidence 4568899999766654 6777777654 443
No 139
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=81.42 E-value=29 Score=30.25 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=57.3
Q ss_pred eceeCCc-c-hHHHHHHHHHhCCC--CeEEEEecCcchH---HHHHHHHHhhhcCCcceEEEEcCCCCCh-HHHHHHHHH
Q 017849 28 LLPVANR-P-VLSYVLEQLELSNI--KDLIVVVEGADAA---LRVGGWISAAYVDRLHVEVATVPEDVGT-AGALRAIAH 99 (365)
Q Consensus 28 llpv~gk-p-lI~~~L~~l~~~gi--~~v~vv~~~~~~~---~~i~~~~~~~~~~~~~v~i~~~~~~~gt-~~al~~~~~ 99 (365)
++|.-|. + +|..+|+.+.+... -+|+|+-+..... +.+.++.... ...+.++......|- ++++..+.+
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~---~~~i~~i~~~~~~G~~~~a~n~g~~ 79 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL---GERFRFFHVEPLPGAKAGALNYALE 79 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHh---CCcEEEEEcCCCCCCchHHHHHHHH
Confidence 4677675 3 79999999987653 3666665433211 1122333221 123445544444553 777877777
Q ss_pred HcC--CCcEEEEeCCcccCCC-hHHHHHHHH
Q 017849 100 HLT--AKDVLVVSGDLVSDVP-PGAVTAAHR 127 (365)
Q Consensus 100 ~i~--~~~~lv~~~D~i~~~~-l~~~l~~h~ 127 (365)
... .+.++++.+|.+.+.+ +..++....
T Consensus 80 ~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 80 RTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred hcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 654 3678999999655544 777777664
No 140
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.21 E-value=18 Score=30.77 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=58.1
Q ss_pred eceeCCc-chHHHHHHHHHhCCC--CeEEEEecCcchHHHHHHHHHhhhcC-CcceEEEEcCCCCChHHHHHHHHHHcCC
Q 017849 28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVD-RLHVEVATVPEDVGTAGALRAIAHHLTA 103 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~-~~~v~i~~~~~~~gt~~al~~~~~~i~~ 103 (365)
++|.-|+ ..|..+|+.+.+... -+|+|+-+... +...+.++.+... ...+.+...+...|.+.++..+......
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~--d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g 80 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGST--DGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADG 80 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCC--CCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCC
Confidence 4566666 688899999876643 35666654321 1222333322111 1123444445567888888888776666
Q ss_pred CcEEEEeCCcccC-CChHHHHHH
Q 017849 104 KDVLVVSGDLVSD-VPPGAVTAA 125 (365)
Q Consensus 104 ~~~lv~~~D~i~~-~~l~~~l~~ 125 (365)
+.++++..|.+.. ..+..+++.
T Consensus 81 ~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 81 DYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred CEEEEECCCcccChhHHHHHHHH
Confidence 7888999885554 447777776
No 141
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.17 E-value=26 Score=29.69 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=56.4
Q ss_pred ceeCCc-chHHHHHHHHHhCCC--CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHc---C
Q 017849 29 LPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---T 102 (365)
Q Consensus 29 lpv~gk-plI~~~L~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i---~ 102 (365)
+|.-|+ ..|..+|+.+.+... .+|+|+-+... +...+.+.... ...++.++..+...|.+.++..+.+.. .
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~--d~t~~~~~~~~-~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~ 79 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNAST--DGTAEWLTSLG-DLDNIVYLRLPENLGGAGGFYEGVRRAYELG 79 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCC--cchHHHHHHhc-CCCceEEEECccccchhhHHHHHHHHHhccC
Confidence 344444 688999999977643 36666654321 24445554431 122355665566677776666555433 2
Q ss_pred CCcEEEEeCCcccCCC-hHHHHHHHH
Q 017849 103 AKDVLVVSGDLVSDVP-PGAVTAAHR 127 (365)
Q Consensus 103 ~~~~lv~~~D~i~~~~-l~~~l~~h~ 127 (365)
.+.++++..|.+...+ +..+++...
T Consensus 80 ~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 80 YDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 4568888899776654 566666554
No 142
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=79.67 E-value=39 Score=29.64 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=58.8
Q ss_pred eceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCCcE
Q 017849 28 LLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDV 106 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~ 106 (365)
++|.-|. ..|..+|+.+... ..+|+|+-+... +...+.++. .++.++.. ...|-+.+...+++....+.+
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gSt--D~t~~i~~~-----~~~~v~~~-~~~g~~~~~n~~~~~a~~d~v 75 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGST--DRTVEIAKE-----YGAKVYQR-WWDGFGAQRNFALELATNDWV 75 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCC--ccHHHHHHH-----cCCEEEEC-CCCChHHHHHHHHHhCCCCEE
Confidence 4555554 7788889888654 368888765332 233344432 24555544 557777777777887777789
Q ss_pred EEEeCCcccCCC-hHHHHHHHHhc
Q 017849 107 LVVSGDLVSDVP-PGAVTAAHRRH 129 (365)
Q Consensus 107 lv~~~D~i~~~~-l~~~l~~h~~~ 129 (365)
+++.+|.+...+ +..+.+...+.
T Consensus 76 l~lDaD~~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 76 LSLDADERLTPELADEILALLATD 99 (229)
T ss_pred EEEeCCcCcCHHHHHHHHHHHhCC
Confidence 999999666554 55555554433
No 143
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=78.87 E-value=46 Score=31.99 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=60.7
Q ss_pred eceeCCc-chHHHHHHHHHhCCC---CeEEEEecCcc-hHHHHHHHHHhhhcCCcceEEEEcCC-C---CChHHHHHHHH
Q 017849 28 LLPVANR-PVLSYVLEQLELSNI---KDLIVVVEGAD-AALRVGGWISAAYVDRLHVEVATVPE-D---VGTAGALRAIA 98 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi---~~v~vv~~~~~-~~~~i~~~~~~~~~~~~~v~i~~~~~-~---~gt~~al~~~~ 98 (365)
.+|.-|. +.|..+|+.+.+... -+|+|+-+... ....+.+.+.........+.++..+. + .|-+.++..+.
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~ 124 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGI 124 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHH
Confidence 4666665 899999999977643 26777755321 11122221211111111355543221 2 35556777776
Q ss_pred HHcC-----CCcEEEEeCCcccCC-ChHHHHHHHHhcCCeE
Q 017849 99 HHLT-----AKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV 133 (365)
Q Consensus 99 ~~i~-----~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~ 133 (365)
+... .+.++++.+|...+. .+..+++...+.+.++
T Consensus 125 ~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 125 AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 6555 567999999976654 4788888776655543
No 144
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=78.65 E-value=34 Score=29.80 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=54.1
Q ss_pred eCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCC---CcE
Q 017849 31 VANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA---KDV 106 (365)
Q Consensus 31 v~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~---~~~ 106 (365)
.++. ..|..+|+.+.+. ..+|+|+=+..+ +........ ...++.++..+...|-+.+...+.+.... +.+
T Consensus 6 yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~--~~~~~~~~~---~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v 79 (237)
T cd02526 6 YNPDLSKLKELLAALAEQ-VDKVVVVDNSSG--NDIELRLRL---NSEKIELIHLGENLGIAKALNIGIKAALENGADYV 79 (237)
T ss_pred ecCCHHHHHHHHHHHhcc-CCEEEEEeCCCC--ccHHHHhhc---cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEE
Confidence 4455 7888999998776 556666644322 122222211 12356666656668888887777766543 779
Q ss_pred EEEeCCcccCCC-hHHHH
Q 017849 107 LVVSGDLVSDVP-PGAVT 123 (365)
Q Consensus 107 lv~~~D~i~~~~-l~~~l 123 (365)
+++.+|.+.+.+ +..++
T Consensus 80 ~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 80 LLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred EEECCCCCcCHhHHHHHH
Confidence 999999766544 56664
No 145
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=78.23 E-value=37 Score=28.02 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=54.7
Q ss_pred ceeCCc-chHHHHHHHHHhCC--CCeEEEEecCcchHHHHHHHHHhhhcC-CcceEEEEcC-CCCChHHHHHHHHHHcCC
Q 017849 29 LPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVD-RLHVEVATVP-EDVGTAGALRAIAHHLTA 103 (365)
Q Consensus 29 lpv~gk-plI~~~L~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~-~~~v~i~~~~-~~~gt~~al~~~~~~i~~ 103 (365)
+|.-|+ ..|..+|+.+.+.- ..+++|+-.... +...+++.+.... ...+..+... ...|.+.++..+.+....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g 80 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGST--EETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKG 80 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCc--hhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcC
Confidence 566565 67899999997653 346666654332 2333444332110 1123223222 234556666667776666
Q ss_pred CcEEEEeCCcccCCC-hHHHHHHH
Q 017849 104 KDVLVVSGDLVSDVP-PGAVTAAH 126 (365)
Q Consensus 104 ~~~lv~~~D~i~~~~-l~~~l~~h 126 (365)
+.++++.+|.+...+ +..+++.+
T Consensus 81 ~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 81 DYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred CEEEEEcCCcccCHHHHHHHHHHh
Confidence 789999999766554 56666655
No 146
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=77.15 E-value=2.1 Score=37.81 Aligned_cols=109 Identities=27% Similarity=0.305 Sum_probs=52.8
Q ss_pred ceEEEEcCCCC---CCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 3 FQVVVLAGGTS---KKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 3 ~~avIlA~G~g---~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
|.+||+.-..+ |||.|..+.. --.=.-+-|+..++..+.. ++ |+|++... .+..... ...++
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~----eR~~La~aMl~Dvl~al~~--v~-v~vVs~d~----~v~~~a~----~~~g~ 65 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPE----EREALALAMLRDVLAALRA--VD-VVVVSRDP----EVAALAR----ARLGA 65 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HH----HHHHHHHHHHHHHHHHHHH---S-EEEEES------S-TTTTT-------SS
T ss_pred CeEEEEcCCCCccccccCccCCHH----HHHHHHHHHHHHHHHHHHh--cC-eEEeccch----hhhhhhh----hccCC
Confidence 46777765443 5775431100 0000013589999999977 66 77776632 2222111 12467
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCC--cccCCChHHHHHHHH
Q 017849 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHR 127 (365)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~ 127 (365)
.++..+ ..|.-.|+..+......+.++++++| ++...++..++....
T Consensus 66 ~vl~d~-~~gLN~Al~~a~~~~~~~~vlvl~aDLPll~~~dl~~~l~~~~ 114 (217)
T PF01983_consen 66 EVLPDP-GRGLNAALNAALAAAGDDPVLVLPADLPLLTPEDLDALLAAAG 114 (217)
T ss_dssp EEEE----S-HHHHHHHHHH-H--S-EEEE-S--TT--HHHHHHHCT-SS
T ss_pred eEecCC-CCCHHHHHHHHHhccCCCceEEeecCCccCCHHHHHHHHhccC
Confidence 776544 56777888888444456789999999 577788888887753
No 147
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=75.59 E-value=53 Score=28.39 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=60.1
Q ss_pred eceeCCc--chHHHHHHHHHhCCCC----eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCC-ChHHHHHHHHHH
Q 017849 28 LLPVANR--PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDV-GTAGALRAIAHH 100 (365)
Q Consensus 28 llpv~gk--plI~~~L~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~-gt~~al~~~~~~ 100 (365)
.+|.-|. .+|..+|+.+...... +|+|+-+.. .+...+.+..... ...+.++..+... +.+.++..+.+.
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s--~d~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~~~~~ 82 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGR--RPELRALAAELGV-EYGYRYLTRPDNRHAKAGNLNNALAH 82 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCC--chhHHHHHHHhhc-ccCceEEEeCCCCCCcHHHHHHHHHh
Confidence 4566675 3788999999876543 567765533 2345555554321 1233444444333 345667777777
Q ss_pred cCCCcEEEEeCCcccCCC-hHHHHHHHHh
Q 017849 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRR 128 (365)
Q Consensus 101 i~~~~~lv~~~D~i~~~~-l~~~l~~h~~ 128 (365)
...+.++++.+|.+.+.+ +..+++...+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 766789999999766554 6777776654
No 148
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.83 E-value=42 Score=28.77 Aligned_cols=95 Identities=22% Similarity=0.178 Sum_probs=56.1
Q ss_pred eceeCCc-chHHHHHHHHHhCC--CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~ 104 (365)
++|+-|. +.|..+|+.+.+.- ..+|+|+-+... +...+.+.. ..+.+. ....|.+.++..+......+
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~--d~~~~~~~~-----~~~~~~--~~~~g~~~a~n~g~~~a~~~ 74 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGST--DGTVAIARS-----AGVVVI--SSPKGRARQMNAGAAAARGD 74 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCC--ccHHHHHhc-----CCeEEE--eCCcCHHHHHHHHHHhccCC
Confidence 4566565 67888888887653 246666644221 233333432 233333 33466777777777777667
Q ss_pred cEEEEeCCcccCCC-hHHHHHHHHhcCC
Q 017849 105 DVLVVSGDLVSDVP-PGAVTAAHRRHDA 131 (365)
Q Consensus 105 ~~lv~~~D~i~~~~-l~~~l~~h~~~~a 131 (365)
.++++..|.....+ +..++......+.
T Consensus 75 ~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 102 (221)
T cd02522 75 WLLFLHADTRLPPDWDAAIIETLRADGA 102 (221)
T ss_pred EEEEEcCCCCCChhHHHHHHHHhhcCCc
Confidence 89999999665544 5666555544443
No 149
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=73.25 E-value=8.9 Score=41.42 Aligned_cols=93 Identities=15% Similarity=0.108 Sum_probs=50.9
Q ss_pred cEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCC-cEEEEeecccc
Q 017849 105 DVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTK-QFLLHIATGAE 183 (365)
Q Consensus 105 ~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~-~~l~~~~~~~~ 183 (365)
.++|+.||.+...+- .+. .-.++++..+....+ |+ -.+.+|+++.|.++ ..+.++-.+|.
T Consensus 154 g~li~~gDv~~~f~~--~~~--~~~~~~~~~~~~~~~---~~------------~~~~HGVfv~~~~~~~~~~~~LqKps 214 (974)
T PRK13412 154 HTLIASGDVYIRSEQ--PLQ--DIPEADVVCYGLWVD---PS------------LATNHGVFVSSRKSPERLDFMLQKPS 214 (974)
T ss_pred ceEEEecchhhhccc--ccc--CCCccCeEEEEeccC---hh------------hccCceEEEeCCCChHHHHHHhcCCC
Confidence 599999996543321 111 123456655544332 11 14567999988763 12233333332
Q ss_pred ccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849 184 LEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (365)
Q Consensus 184 ~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~ 226 (365)
.|+- ..+. .-...+.|+|+|+|+.+....++..
T Consensus 215 ~eel----~a~~------~~~~~l~D~g~~~~~~~a~~~L~~~ 247 (974)
T PRK13412 215 LEEL----GGLS------KTHLFLMDIGIWLLSDRAVELLMKR 247 (974)
T ss_pred HHHH----Hhhh------cCCeEEEeeeEEEEChHHHHHHHHh
Confidence 2221 1111 2234688999999999988877643
No 150
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=72.23 E-value=64 Score=28.56 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=59.5
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~ 84 (365)
.+++|-|.-..| +...| -+--.++|...+..+... .++.|++... +++......|-.-...+.+...
T Consensus 91 illlCTG~F~~l----~~~~~----lleP~ril~~lV~al~~~--~~vGVivP~~---eQ~~~~~~kW~~l~~~~~~a~a 157 (221)
T PF07302_consen 91 ILLLCTGEFPGL----TARNP----LLEPDRILPPLVAALVGG--HQVGVIVPLP---EQIAQQAEKWQPLGNPVVVAAA 157 (221)
T ss_pred EEEeccCCCCCC----CCCcc----eeehHHhHHHHHHHhcCC--CeEEEEecCH---HHHHHHHHHHHhcCCCeEEEEe
Confidence 355666643344 44333 233467888888888654 7899999854 3444444444221224455544
Q ss_pred CCCCChHHHHHHHHHHcC--CCcEEEEeCCccc
Q 017849 85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDLVS 115 (365)
Q Consensus 85 ~~~~gt~~al~~~~~~i~--~~~~lv~~~D~i~ 115 (365)
..+.|+.+.+..+.+.+. .-+++++.|=-++
T Consensus 158 sPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt 190 (221)
T PF07302_consen 158 SPYEGDEEELAAAARELAEQGADLIVLDCMGYT 190 (221)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 445688888888877666 4679999886543
No 151
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=71.59 E-value=1.6 Score=26.23 Aligned_cols=13 Identities=8% Similarity=0.363 Sum_probs=6.7
Q ss_pred ceeCCcccccCCC
Q 017849 352 AELGSKTTVSSSL 364 (365)
Q Consensus 352 ~~i~~~~~ig~~~ 364 (365)
+.||+++.|++++
T Consensus 18 i~igd~~~i~~g~ 30 (34)
T PF14602_consen 18 ITIGDGVIIGAGV 30 (34)
T ss_dssp SEE-TTEEE-TTE
T ss_pred CEEcCCCEECCCC
Confidence 5556666666664
No 152
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=68.97 E-value=63 Score=30.36 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=38.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccC-CChHHHHHHHHhcCCeEE
Q 017849 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDAVVT 134 (365)
Q Consensus 79 v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~~~a~~t 134 (365)
+..+......|.+.|+..+.+....+.++++.+|...+ ..+..+++... .+.++.
T Consensus 67 v~~i~~~~n~G~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 67 IVAILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred EEEEEeCCCCCHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 33333345678889999888877777899999997654 46788888764 456643
No 153
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=68.77 E-value=61 Score=31.37 Aligned_cols=103 Identities=20% Similarity=0.249 Sum_probs=66.3
Q ss_pred eeceeCCc-c-hHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCC-cceEEEEc-CCCCChHHHHHHHHHH
Q 017849 27 ALLPVANR-P-VLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDR-LHVEVATV-PEDVGTAGALRAIAHH 100 (365)
Q Consensus 27 ~llpv~gk-p-lI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~-~~v~i~~~-~~~~gt~~al~~~~~~ 100 (365)
-++|.-|. + .++.+++++.+.... +|+++..... +...+.+......- ..+.+... ....|-+.++..++..
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~ 135 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGST--DETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKR 135 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCC--hhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhh
Confidence 35677776 6 999999999988754 6777765331 24444444321110 12333322 3456778899888887
Q ss_pred cCCCcEEEEeCCcccCCC-hHHHHHHHHhcCC
Q 017849 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDA 131 (365)
Q Consensus 101 i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a 131 (365)
...+.++++.+|.+..-| +..++..+.....
T Consensus 136 ~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 136 AKGDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred cCCCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 766778999999776655 6777777765433
No 154
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=68.47 E-value=77 Score=27.26 Aligned_cols=100 Identities=19% Similarity=0.121 Sum_probs=57.0
Q ss_pred ceeCCc-chHHHHHHHHHhCCC---CeEEEEecCcchHHHHHHHHHhhh--cCCcceEEEEc----CCCCChHHHHHHHH
Q 017849 29 LPVANR-PVLSYVLEQLELSNI---KDLIVVVEGADAALRVGGWISAAY--VDRLHVEVATV----PEDVGTAGALRAIA 98 (365)
Q Consensus 29 lpv~gk-plI~~~L~~l~~~gi---~~v~vv~~~~~~~~~i~~~~~~~~--~~~~~v~i~~~----~~~~gt~~al~~~~ 98 (365)
+|.-|. ..|..+|+.+..... -+|+|+-+... +...+.+..+. ....++.++.. +...|.+.+.-.+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~--d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~ 80 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDAST--DKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAI 80 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--ccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHH
Confidence 455554 788999999976533 26666654321 11222222211 01123444432 22367777777777
Q ss_pred HHcCCCcEEEEeCCccc-CCChHHHHHHHHhcC
Q 017849 99 HHLTAKDVLVVSGDLVS-DVPPGAVTAAHRRHD 130 (365)
Q Consensus 99 ~~i~~~~~lv~~~D~i~-~~~l~~~l~~h~~~~ 130 (365)
+....+.++++.+|.+. +..+..++....+..
T Consensus 81 ~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 81 AQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred HhcCCCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 76666789999999654 445777776665543
No 155
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=68.18 E-value=78 Score=34.09 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=64.8
Q ss_pred eceeCCcc--hHHHHHHHHHhCCC----CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCC-CCChHHHHHHHHHH
Q 017849 28 LLPVANRP--VLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHH 100 (365)
Q Consensus 28 llpv~gkp--lI~~~L~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~-~~gt~~al~~~~~~ 100 (365)
++|.-|.+ ++..++..+.+..- -+|+|+-+.. .+...+..++ .++.++..++ ..+-++++-.+++.
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS--~D~t~~la~~-----~~v~yI~R~~n~~gKAGnLN~aL~~ 337 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGG--REEFRQFAQE-----VGVKYIARPTHEHAKAGNINNALKY 337 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCC--ChHHHHHHHH-----CCcEEEEeCCCCcchHHHHHHHHHh
Confidence 56777875 67778877765432 1566665433 2355555543 3566665443 45667888888888
Q ss_pred cCCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEEE
Q 017849 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAMI 137 (365)
Q Consensus 101 i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l~ 137 (365)
...+.++++.+|.+...+ ++.++..+.+ +..+.++.
T Consensus 338 a~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglVQ 374 (852)
T PRK11498 338 AKGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMMQ 374 (852)
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEEE
Confidence 777889999999876655 5666665543 34455543
No 156
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=66.65 E-value=3.6 Score=38.50 Aligned_cols=11 Identities=9% Similarity=-0.127 Sum_probs=6.6
Q ss_pred cceeeeeCHHH
Q 017849 209 DAHMYAFNRSV 219 (365)
Q Consensus 209 ~~giyi~s~~v 219 (365)
-+|.-+++++.
T Consensus 55 ~Agaviv~~~~ 65 (338)
T COG1044 55 RAGAVIVSAKD 65 (338)
T ss_pred cccEEEecHHH
Confidence 34666666664
No 157
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=66.46 E-value=67 Score=30.72 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=58.4
Q ss_pred eceeCCc-chHHHHHHHHHhCCC--CeEEEEecCcch-HHHHHHHHHhhhcCCcceEEEEcCCCCC---hHHHHHHHHHH
Q 017849 28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADA-ALRVGGWISAAYVDRLHVEVATVPEDVG---TAGALRAIAHH 100 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~gi--~~v~vv~~~~~~-~~~i~~~~~~~~~~~~~v~i~~~~~~~g---t~~al~~~~~~ 100 (365)
++|+-|. +.|...|+.+.+..- -+|+++.+..+. ...+.+.+...+. ...+.++..+...| -..++..+.+.
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p-~~~i~~v~~~~~~G~~~K~~~l~~~~~~ 124 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFP-DADIDLVIDARRHGPNRKVSNLINMLPH 124 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCC-CCceEEEECCCCCCCChHHHHHHHHHHh
Confidence 6788776 889999999977653 367665543321 1122222222222 23455554444444 33455555565
Q ss_pred cCCCcEEEEeCCcccCCC-hHHHHHHHHh
Q 017849 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRR 128 (365)
Q Consensus 101 i~~~~~lv~~~D~i~~~~-l~~~l~~h~~ 128 (365)
.+.+.++++.+|.+...+ ++.++.....
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLAD 153 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcC
Confidence 666789999999766555 6777766643
No 158
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=65.09 E-value=5.1 Score=28.90 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=5.7
Q ss_pred ccCCCceeCCccccc
Q 017849 347 IIHPSAELGSKTTVS 361 (365)
Q Consensus 347 ~i~~~~~i~~~~~ig 361 (365)
+|++++.|+++++||
T Consensus 13 ~i~~~~~Ig~~~~Ig 27 (80)
T cd05824 13 KIGPNVVIGPNVTIG 27 (80)
T ss_pred EECCCCEECCCCEEC
Confidence 333333333333333
No 159
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=62.56 E-value=98 Score=28.81 Aligned_cols=106 Identities=20% Similarity=0.223 Sum_probs=60.4
Q ss_pred eceeCCc-chHHHHHHHHHhC----CCCeEEEEecCcchHHHHHHHHHhhhcCCc--ceEEEE-cCCCCChHHHHHHHHH
Q 017849 28 LLPVANR-PVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVDRL--HVEVAT-VPEDVGTAGALRAIAH 99 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~----gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~--~v~i~~-~~~~~gt~~al~~~~~ 99 (365)
.+|.-|. ..|..+|+.+.+. ...+|+|+-+... +...+.+... ..+. ....+. .+...|-+.++..+..
T Consensus 36 VIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgSt--D~T~~ia~~~-~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~ 112 (306)
T PRK13915 36 VLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGST--DATAERAAAA-GARVVSREEILPELPPRPGKGEALWRSLA 112 (306)
T ss_pred EEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCc--cHHHHHHHHh-cchhhcchhhhhccccCCCHHHHHHHHHH
Confidence 3555554 6788888888652 2457777654321 2333333332 1110 001111 1345788888888877
Q ss_pred HcCCCcEEEEeCCcc-c-CCChHHHHHHHH-hcCCeEEEE
Q 017849 100 HLTAKDVLVVSGDLV-S-DVPPGAVTAAHR-RHDAVVTAM 136 (365)
Q Consensus 100 ~i~~~~~lv~~~D~i-~-~~~l~~~l~~h~-~~~a~~t~l 136 (365)
....+.++++.+|.. . +..+..+++... ..+.++...
T Consensus 113 ~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 113 ATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred hcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 666677999999975 4 445788887765 345555444
No 160
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=60.72 E-value=5.4 Score=36.69 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=10.5
Q ss_pred CCccCCCceeCCcccccCCC
Q 017849 345 NNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 345 ~~~i~~~~~i~~~~~ig~~~ 364 (365)
...||||+.||.+++||+++
T Consensus 300 tAkiGPNVSIga~vrvg~Gv 319 (407)
T KOG1460|consen 300 TAKIGPNVSIGANVRVGPGV 319 (407)
T ss_pred ccccCCCceecCCceecCCc
Confidence 34455555555555555543
No 161
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=60.44 E-value=6.6 Score=35.96 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=11.3
Q ss_pred CccCCCceeCCcccccCCC
Q 017849 346 NIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 346 ~~i~~~~~i~~~~~ig~~~ 364 (365)
.+|+++|+||++++|..++
T Consensus 162 ivIG~~a~IGdnv~I~~~V 180 (273)
T PRK11132 162 IVIGETAVIENDVSILQSV 180 (273)
T ss_pred eEECCCCEECCCCEEcCCc
Confidence 4566666666666665554
No 162
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=60.43 E-value=66 Score=29.73 Aligned_cols=105 Identities=17% Similarity=0.126 Sum_probs=62.9
Q ss_pred eceeCCcchHHHHHHHHHhCCCCeEEE-EecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC-C-C
Q 017849 28 LLPVANRPVLSYVLEQLELSNIKDLIV-VVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT-A-K 104 (365)
Q Consensus 28 llpv~gkplI~~~L~~l~~~gi~~v~v-v~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~-~-~ 104 (365)
.+-.+...-+...|..+.+.......+ ++.... .+...+.++... ...+.++..++..|-+++.-.+..... + .
T Consensus 9 iv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s-~d~~~~~~~~~~--~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~ 85 (305)
T COG1216 9 IVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGS-TDGSLEALKARF--FPNVRLIENGENLGFAGGFNRGIKYALAKGD 85 (305)
T ss_pred EEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCC-CCCCHHHHHhhc--CCcEEEEEcCCCccchhhhhHHHHHHhcCCC
Confidence 344556678888899898877433333 333221 123344444321 125667766667777766665544332 2 2
Q ss_pred -cEEEEeCCcccC-CChHHHHHHHHhcCCeEEE
Q 017849 105 -DVLVVSGDLVSD-VPPGAVTAAHRRHDAVVTA 135 (365)
Q Consensus 105 -~~lv~~~D~i~~-~~l~~~l~~h~~~~a~~t~ 135 (365)
.+++++-|.+.. ..+.++++.+.+.+..+.+
T Consensus 86 ~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 86 DYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred cEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEe
Confidence 699999996664 4588999998876554433
No 163
>PRK10063 putative glycosyl transferase; Provisional
Probab=60.23 E-value=1.3e+02 Score=26.94 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=52.2
Q ss_pred cchHHHHHHHHHh----CCC-CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEE
Q 017849 34 RPVLSYVLEQLEL----SNI-KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLV 108 (365)
Q Consensus 34 kplI~~~L~~l~~----~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv 108 (365)
...|..+|+.+.. .+. -+|+|+-+.. .+...+.++.+. +...+.++..+ ..|.++|+..+++....+.+++
T Consensus 13 ~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgS--tD~t~~i~~~~~-~~~~i~~i~~~-~~G~~~A~N~Gi~~a~g~~v~~ 88 (248)
T PRK10063 13 LEGIVKTHASLRHLAQDPGISFEWIVVDGGS--NDGTREFLENLN-GIFNLRFVSEP-DNGIYDAMNKGIAMAQGRFALF 88 (248)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEECcC--cccHHHHHHHhc-ccCCEEEEECC-CCCHHHHHHHHHHHcCCCEEEE
Confidence 3678888888753 122 2566664322 123344454431 11235565543 4699999988888777778889
Q ss_pred EeCCcccCCChHHHHHHHH
Q 017849 109 VSGDLVSDVPPGAVTAAHR 127 (365)
Q Consensus 109 ~~~D~i~~~~l~~~l~~h~ 127 (365)
+++|-+...+..+++....
T Consensus 89 ld~DD~~~~~~~~~~~~~~ 107 (248)
T PRK10063 89 LNSGDIFHQDAANFVRQLK 107 (248)
T ss_pred EeCCcccCcCHHHHHHHHH
Confidence 9977555445434444443
No 164
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=60.09 E-value=1.1e+02 Score=25.93 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=52.9
Q ss_pred eceeCCc-chHHHHHHHHHhCC--CCeEEEEecCcchHHHHHHHHHhhh--cCCcceEEEEcCCCCCh---HHHHHHHHH
Q 017849 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAY--VDRLHVEVATVPEDVGT---AGALRAIAH 99 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~--~~~~~v~i~~~~~~~gt---~~al~~~~~ 99 (365)
++|+-|. +-|...|+.+.+.. --+|+||..... +...+.+.... .....+.++..+...|. +.++..+.+
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~ 83 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDED--DPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYE 83 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCc--chHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHH
Confidence 4566654 67888888887643 236666655332 12222232211 11223445544333332 345555666
Q ss_pred HcCCCcEEEEeCCcccCCC-hHHHHHHH
Q 017849 100 HLTAKDVLVVSGDLVSDVP-PGAVTAAH 126 (365)
Q Consensus 100 ~i~~~~~lv~~~D~i~~~~-l~~~l~~h 126 (365)
....+.++++.+|.+.+.+ +..+++..
T Consensus 84 ~a~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 84 EARYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred hCCCCEEEEECCCceEChhHHHHHHHHh
Confidence 6666778899999765544 67776654
No 165
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=59.14 E-value=53 Score=28.36 Aligned_cols=101 Identities=27% Similarity=0.326 Sum_probs=52.9
Q ss_pred eceeCCc-chHHHHHHHHHhCC--CCeEEEEecCcch--HHHHHHHHHhhhcCCcceEEEEcCCCCC---hHHHHHHHHH
Q 017849 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADA--ALRVGGWISAAYVDRLHVEVATVPEDVG---TAGALRAIAH 99 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~g--i~~v~vv~~~~~~--~~~i~~~~~~~~~~~~~v~i~~~~~~~g---t~~al~~~~~ 99 (365)
++|..|+ +.|..+|+.+.... --+|+|+.+.... .+.+.++... +. ..++.++..+...| .+.++..+.+
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~-~~-~~~v~vi~~~~~~g~~~k~~a~n~~~~ 83 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAAR-YP-RVRVRVIRRPRNPGPGGKARALNEALA 83 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHT-TG-G-GEEEEE----HHHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHH-cC-CCceEEeecCCCCCcchHHHHHHHHHH
Confidence 5677776 89999999997642 2456666643211 1123332222 22 23456665444333 4577777877
Q ss_pred HcCCCcEEEEeCCcccCCC-hHHHHHHHHhcC
Q 017849 100 HLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHD 130 (365)
Q Consensus 100 ~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~ 130 (365)
....+.++++..|.+.+-+ +..+++.+...+
T Consensus 84 ~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~ 115 (228)
T PF13641_consen 84 AARGDYILFLDDDTVLDPDWLERLLAAFADPG 115 (228)
T ss_dssp H---SEEEEE-SSEEE-CHHHHHHHHHHHBSS
T ss_pred hcCCCEEEEECCCcEECHHHHHHHHHHHHhCC
Confidence 7777789999999766544 777777773333
No 166
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=58.16 E-value=1.5e+02 Score=27.03 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHcCCCcEEEEeCCcccCCC-hHHHHH
Q 017849 88 VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTA 124 (365)
Q Consensus 88 ~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~-l~~~l~ 124 (365)
.|.+.+.-.+......+.++++.+|++...+ +..+++
T Consensus 74 f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 74 FSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred cCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 5777777777777777789999999877655 666666
No 167
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=56.70 E-value=1.8e+02 Score=30.64 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=62.4
Q ss_pred eceeCCcc--hHHHHHHHHHhCCCC----eEEEEecCc-ch---------------HHHHHHHHHhhhcCCcceEEEEcC
Q 017849 28 LLPVANRP--VLSYVLEQLELSNIK----DLIVVVEGA-DA---------------ALRVGGWISAAYVDRLHVEVATVP 85 (365)
Q Consensus 28 llpv~gkp--lI~~~L~~l~~~gi~----~v~vv~~~~-~~---------------~~~i~~~~~~~~~~~~~v~i~~~~ 85 (365)
++|.-|.+ ++..++..+.+..-. +|+|+-... +. .+.+.+..+ +.++.++..+
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~-----~~~v~yi~r~ 210 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR-----KLGVNYITRP 210 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH-----HcCcEEEECC
Confidence 57888874 667788888765432 666665431 00 012222222 2356666544
Q ss_pred C-CCChHHHHHHHHHHcCCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 017849 86 E-DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (365)
Q Consensus 86 ~-~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l 136 (365)
. ..+-++++..+++....+.++++.+|.+...+ +..++..+.+ +..+.++
T Consensus 211 ~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 211 RNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred CCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 3 34557888888887777889999999877655 5677766643 3344443
No 168
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=56.46 E-value=6.3 Score=36.77 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=13.2
Q ss_pred CCCccCCCceeCCcccccCCC
Q 017849 344 QNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 344 ~~~~i~~~~~i~~~~~ig~~~ 364 (365)
++|.|+|+++||++++|+.++
T Consensus 275 ~~C~Ig~~vvIG~r~~i~~gV 295 (371)
T KOG1322|consen 275 ENCSIGPNVVIGPRVRIEDGV 295 (371)
T ss_pred CccEECCCceECCCcEecCce
Confidence 556666666666666666554
No 169
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=55.72 E-value=1.3e+02 Score=25.43 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=54.5
Q ss_pred eceeCCc-chHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcC---CCCChHHHHHHHHHHcC
Q 017849 28 LLPVANR-PVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP---EDVGTAGALRAIAHHLT 102 (365)
Q Consensus 28 llpv~gk-plI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~---~~~gt~~al~~~~~~i~ 102 (365)
++|.-|. ..|..+|+.+.+.. -.+|+|+-+... +...+.++ .......+.++... ...|-+.++..+++.+.
T Consensus 2 iIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~--D~t~~~~~-~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~ 78 (191)
T cd06436 2 LVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASD--DDTAGIVR-LAITDSRVHLLRRHLPNARTGKGDALNAAYDQIR 78 (191)
T ss_pred EEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCC--cCHHHHHh-heecCCcEEEEeccCCcCCCCHHHHHHHHHHHHh
Confidence 3555554 78899999997764 235666654322 23333343 11111245555432 24678888888776553
Q ss_pred -----------CCcEEEEeCCcccCCC-hHHHHHHH
Q 017849 103 -----------AKDVLVVSGDLVSDVP-PGAVTAAH 126 (365)
Q Consensus 103 -----------~~~~lv~~~D~i~~~~-l~~~l~~h 126 (365)
.+.++++.+|...+.+ +..+....
T Consensus 79 ~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 79 QILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred hhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 1458899999766544 56654443
No 170
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=54.04 E-value=68 Score=23.75 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=34.1
Q ss_pred ceeceeCCcchHHHHHHHH--HhCCCCeEEEEecCcchHHH--HHHHHHhhhcC
Q 017849 26 KALLPVANRPVLSYVLEQL--ELSNIKDLIVVVEGADAALR--VGGWISAAYVD 75 (365)
Q Consensus 26 K~llpv~gkplI~~~L~~l--~~~gi~~v~vv~~~~~~~~~--i~~~~~~~~~~ 75 (365)
...+-+|.||.+.|+|..+ .+.|.++|++-......+.. ..+.+++.+..
T Consensus 4 envV~vG~KPvmNYVlAvlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p 57 (91)
T COG1581 4 ENVVLVGKKPVMNYVLAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIP 57 (91)
T ss_pred ccEEEEcCcchHHHHHHHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCC
Confidence 4567789999999999988 45689999998875432222 23445555543
No 171
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=53.14 E-value=81 Score=22.64 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=37.2
Q ss_pred CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCC
Q 017849 50 KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD 112 (365)
Q Consensus 50 ~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D 112 (365)
.++.++++.+...+.+...++ .+++..+.-...+|-..||+..++.+++..-+.+..|
T Consensus 10 ~~~~~lvS~s~DGe~ia~~~~-----~~G~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~itpD 67 (74)
T PF04028_consen 10 RKIAALVSRSRDGELIARVLE-----RFGFRTIRGSSSRGGARALREMLRALKEGYSIAITPD 67 (74)
T ss_pred CCEEEEEccCcCHHHHHHHHH-----HcCCCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEeCC
Confidence 345555553322344444443 3466666666778888999999998887776666666
No 172
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=51.62 E-value=9.2 Score=26.79 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=17.2
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
.....++.+.++++||+++.||+++
T Consensus 51 ~~v~~~~~i~~~~~ig~~~~i~~~s 75 (78)
T cd00208 51 VEIGANAVIHGGVKIGDNAVIGAGA 75 (78)
T ss_pred cEECCCCEEeCCCEECCCCEECcCc
Confidence 3444566777777788888877765
No 173
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=50.37 E-value=75 Score=27.48 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=66.8
Q ss_pred ceEEEEcC---CCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 3 FQVVVLAG---GTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 3 ~~avIlA~---G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
|.+||+-. +.-|||.|......-+.++ .-|+-.++..+... +.+|.|++... .+..... +.
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpde----~~~~~a~-------~~ 64 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPDE----EVLVPAT-------KL 64 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCCh----Hhhhhcc-------cc
Confidence 35666543 5567887652211111111 35888888888765 78899998743 3322211 22
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCC-CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 017849 80 EVATVPEDVGTAGALRAIAHHLTA-KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (365)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~ 135 (365)
++... ...-.++.++++.+.. +.++|+.+| ++.+.+++.+++.-+. +++.+
T Consensus 65 ~vl~d---~dLN~Ai~aa~~~~~~p~~v~vvmaDLPLl~~~~i~~~~~~~~d--~dvvi 118 (210)
T COG1920 65 EVLAD---PDLNTAINAALDEIPLPSEVIVVMADLPLLSPEHIERALSAAKD--ADVVI 118 (210)
T ss_pred eeeec---cchHHHHHHHHhhCCCCcceEEEecccccCCHHHHHHHHHhcCC--CcEEE
Confidence 34332 2244567777777653 569999999 5777888888876543 55443
No 174
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=50.20 E-value=28 Score=27.50 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.0
Q ss_pred CcchHHHHHHHHHhCCCCeEEEE
Q 017849 33 NRPVLSYVLEQLELSNIKDLIVV 55 (365)
Q Consensus 33 gkplI~~~L~~l~~~gi~~v~vv 55 (365)
+.|-|+-.++.|...|+++|+|+
T Consensus 44 ~~P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NEPTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 57999999999999999888876
No 175
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=49.48 E-value=9.7 Score=32.02 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=15.5
Q ss_pred CCCCCCccCCCceeCCcccccCCCC
Q 017849 341 FSAQNNIIHPSAELGSKTTVSSSLC 365 (365)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~ig~~~~ 365 (365)
..+.++.|.++++||+++.||++++
T Consensus 126 ~Ig~~a~I~~gv~Ig~~~~Vgagav 150 (169)
T cd03357 126 WIGGGVIILPGVTIGDNSVIGAGSV 150 (169)
T ss_pred EECCCCEEeCCCEECCCCEECCCCE
Confidence 3345556666667777777776653
No 176
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=47.99 E-value=32 Score=29.15 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=9.0
Q ss_pred ceEEEeCCHHHHHHHhHHH
Q 017849 311 KYCVRLNSIQAFMDINRDV 329 (365)
Q Consensus 311 ~y~~ri~~~~~Y~~~n~~~ 329 (365)
.++..+.+.+...++-..+
T Consensus 61 ~~iiai~~~~~~~~i~~~l 79 (201)
T TIGR03570 61 DLVVAIGDNKLRRRLFEKL 79 (201)
T ss_pred EEEEEcCCHHHHHHHHHHH
Confidence 3455554444444444444
No 177
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=47.50 E-value=34 Score=32.20 Aligned_cols=19 Identities=0% Similarity=-0.080 Sum_probs=10.3
Q ss_pred eEEEeCCHHHHHHHhHHHh
Q 017849 312 YCVRLNSIQAFMDINRDVI 330 (365)
Q Consensus 312 y~~ri~~~~~Y~~~n~~~l 330 (365)
.+..+.++..-|..=..++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~ 84 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELF 84 (324)
T ss_pred eEEEECCHHHHHHHHHHHh
Confidence 4556778765443334444
No 178
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=46.86 E-value=29 Score=25.78 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=25.7
Q ss_pred ceeCCcchHHHHHHHHH--hCCCCeEEEEecCc
Q 017849 29 LPVANRPVLSYVLEQLE--LSNIKDLIVVVEGA 59 (365)
Q Consensus 29 lpv~gkplI~~~L~~l~--~~gi~~v~vv~~~~ 59 (365)
+-+|+||++.|++..+. +.|.++|.+-....
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKarG~ 36 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKARGR 36 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEecc
Confidence 45789999999999996 46799999987654
No 179
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=46.52 E-value=50 Score=31.46 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCceeceeCCc-chHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHh
Q 017849 15 KLVPLVSKEVPKALLPVANR-PVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISA 71 (365)
Q Consensus 15 rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~ 71 (365)
.|.|| ....+.-++.|-+| .-+.+.|+.|.++ ||+++.++.++....+++.+.+++
T Consensus 24 ~f~~l-~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 24 KFGPL-ANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred hcCCC-CCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHh
Confidence 56667 66777888999999 5899999999665 799999999977667788888775
No 180
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=45.65 E-value=1.2e+02 Score=22.27 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=41.4
Q ss_pred chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCC--CC-hHHHHHHH-HHHc-CCCcEEEE
Q 017849 35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPED--VG-TAGALRAI-AHHL-TAKDVLVV 109 (365)
Q Consensus 35 plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~--~g-t~~al~~~-~~~i-~~~~~lv~ 109 (365)
++|...|......|+++++|+.+... +...+.+... . ++.++....+ .+ .....+.. .+.. ..+.++.+
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~--D~t~~~l~~~--~--~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~ 78 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGST--DGTREILRAL--P--GVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFL 78 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCC--ccHHHHHHhC--C--CcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEE
Confidence 67888888888999999999877442 2445556543 1 2334332222 11 12222222 2332 34668888
Q ss_pred eCC
Q 017849 110 SGD 112 (365)
Q Consensus 110 ~~D 112 (365)
.+|
T Consensus 79 D~D 81 (97)
T PF13704_consen 79 DAD 81 (97)
T ss_pred eee
Confidence 999
No 181
>PRK10502 putative acyl transferase; Provisional
Probab=44.30 E-value=14 Score=31.54 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=17.1
Q ss_pred CCCCCCCCccCCCceeCCcccccCCC
Q 017849 339 YNFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 339 ~~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
....+.+++|.++++||+++.||+++
T Consensus 130 ~~~Ig~~a~I~~Gv~Ig~~~vIga~s 155 (182)
T PRK10502 130 GCWLAADVFVAPGVTIGSGAVVGARS 155 (182)
T ss_pred CcEEcCCCEEcCCCEECCCCEECCCC
Confidence 34445566677777777777777665
No 182
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=43.78 E-value=14 Score=32.20 Aligned_cols=27 Identities=11% Similarity=0.363 Sum_probs=17.7
Q ss_pred CCCCCCCCccCCCceeCCcccccCCCC
Q 017849 339 YNFSAQNNIIHPSAELGSKTTVSSSLC 365 (365)
Q Consensus 339 ~~~~~~~~~i~~~~~i~~~~~ig~~~~ 365 (365)
....+.++.|.++++||+++.||++++
T Consensus 137 ~v~IG~~~~I~~gv~IG~~~vIgagsv 163 (203)
T PRK09527 137 NVWIGSHVVINPGVTIGDNSVIGAGSV 163 (203)
T ss_pred CcEECCCCEEcCCCEECCCCEECCCCE
Confidence 344455666777777777777777653
No 183
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=42.78 E-value=16 Score=31.35 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=12.3
Q ss_pred CCCCccCCCceeCCcccccCCC
Q 017849 343 AQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 343 ~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
+.+++|.+++.||++++||+++
T Consensus 139 G~~a~I~~gv~IG~~~vIgags 160 (183)
T PRK10092 139 GGRAVINPGVTIGDNVVVASGA 160 (183)
T ss_pred CCCCEECCCCEECCCCEECCCC
Confidence 3445555556666666665554
No 184
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=41.31 E-value=18 Score=27.72 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=15.5
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
.....+++|.++++||+.+.||+++
T Consensus 63 ~~ig~~~~i~~g~~Ig~~~~i~~gs 87 (107)
T cd05825 63 AWVAAEAFVGPGVTIGEGAVVGARS 87 (107)
T ss_pred CEECCCCEECCCCEECCCCEECCCC
Confidence 3444556666666666666666665
No 185
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=41.02 E-value=17 Score=30.33 Aligned_cols=9 Identities=11% Similarity=0.427 Sum_probs=3.4
Q ss_pred eCCcccccC
Q 017849 354 LGSKTTVSS 362 (365)
Q Consensus 354 i~~~~~ig~ 362 (365)
||+++.||+
T Consensus 116 Ig~~v~Ig~ 124 (162)
T TIGR01172 116 VGEGVMIGA 124 (162)
T ss_pred ECCCcEEcC
Confidence 333333333
No 186
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=40.23 E-value=59 Score=30.82 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=10.1
Q ss_pred eEEEeCCHHH-HHHHhHHH
Q 017849 312 YCVRLNSIQA-FMDINRDV 329 (365)
Q Consensus 312 y~~ri~~~~~-Y~~~n~~~ 329 (365)
.+..+.++.. |..+.+.+
T Consensus 73 ~~i~~~~p~~~~~~~~~~~ 91 (343)
T PRK00892 73 ALLVVKNPYLAFARLAQLF 91 (343)
T ss_pred eEEEeCCHHHHHHHHHHHh
Confidence 4446677765 55555444
No 187
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=40.18 E-value=18 Score=29.64 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=13.4
Q ss_pred CCCCCccCCCceeCCcccccCCC
Q 017849 342 SAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 342 ~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
...+++|.+++.||+++.||+++
T Consensus 82 Ig~~~~i~~gv~Ig~~~vIgags 104 (145)
T cd03349 82 IGHGATILPGVTIGDGAVIAAGA 104 (145)
T ss_pred ECCCCEEeCCCEECCCCEECCCC
Confidence 34455555666666666666654
No 188
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=40.12 E-value=15 Score=31.17 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=17.3
Q ss_pred CCCCCCCccCCCceeCCcccccCCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSLC 365 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~~ 365 (365)
...+.+++|-|+++||+++.||+++|
T Consensus 131 vwIG~~a~IlpGV~IG~gavigagsV 156 (190)
T COG0110 131 VWIGAGAVILPGVTIGEGAVIGAGSV 156 (190)
T ss_pred eEEcCccEECCCEEECCCcEEeeCCE
Confidence 34455667777777777777777654
No 189
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=39.84 E-value=18 Score=31.01 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=17.2
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
...++++.|+.+|.|.++++||+++
T Consensus 130 v~IGd~v~IG~~a~I~~gv~IG~~~ 154 (183)
T PRK10092 130 VTIGNNVWIGGRAVINPGVTIGDNV 154 (183)
T ss_pred eEECCCcEECCCCEECCCCEECCCC
Confidence 4445667777777777777777765
No 190
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=39.82 E-value=1.4e+02 Score=23.60 Aligned_cols=81 Identities=7% Similarity=-0.014 Sum_probs=34.8
Q ss_pred HHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHc--CCCcEEEEeCCc--cc
Q 017849 40 VLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL--TAKDVLVVSGDL--VS 115 (365)
Q Consensus 40 ~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i--~~~~~lv~~~D~--i~ 115 (365)
+|+.+.+...-+++|........ .....+ +. ..++.+..+ ...+-++.+..+.+.. ..+.++++.+|. +.
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~-~~~~~~--~~--~~~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~ 74 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDH-AAFRQL--WL--PSGFSFFPQ-QGGDLGERMANAFQQAARGYEPVVLIGSDCPDLT 74 (122)
T ss_dssp -------TSSSEEEEEE----TT-HHHHHH--HH---TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--
T ss_pred CccccccCCCcCEEEEEcCCccH-HHHhcc--cc--CCCCEEeec-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCC
Confidence 46677777666777776643221 222211 11 124666665 3355566677665544 235799999994 55
Q ss_pred CCChHHHHHHH
Q 017849 116 DVPPGAVTAAH 126 (365)
Q Consensus 116 ~~~l~~~l~~h 126 (365)
...+....+..
T Consensus 75 ~~~l~~A~~~L 85 (122)
T PF09837_consen 75 PDDLEQAFEAL 85 (122)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 55565555544
No 191
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=38.90 E-value=2.9e+02 Score=24.82 Aligned_cols=108 Identities=11% Similarity=0.120 Sum_probs=56.8
Q ss_pred eceeCCcc--hHHHHHHHHHh----CC---CCeEEEEecCcchHHHHHH--H---HHhhhcCCcceEEEEcCCCCCh-HH
Q 017849 28 LLPVANRP--VLSYVLEQLEL----SN---IKDLIVVVEGADAALRVGG--W---ISAAYVDRLHVEVATVPEDVGT-AG 92 (365)
Q Consensus 28 llpv~gkp--lI~~~L~~l~~----~g---i~~v~vv~~~~~~~~~i~~--~---~~~~~~~~~~v~i~~~~~~~gt-~~ 92 (365)
++|+.|.+ ++.-+|.++.+ .+ --+|+++-...+.+..+.+ . +...+.....+.+..-....|- ++
T Consensus 4 liP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Kag 83 (254)
T cd04191 4 VMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKAG 83 (254)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccHH
Confidence 67888874 46666766543 22 2366555333321111111 1 2222333344555544444443 45
Q ss_pred HHHHHHHHc--CCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 017849 93 ALRAIAHHL--TAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (365)
Q Consensus 93 al~~~~~~i--~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l 136 (365)
.|..++... ..+.++++.+|.+..-+ +..++..+.. +..+.++
T Consensus 84 ~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~-~~~vg~v 129 (254)
T cd04191 84 NIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEA-NPRAGII 129 (254)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHh-CCCEEEE
Confidence 666666543 23679999999766554 7777777653 3344444
No 192
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=37.84 E-value=21 Score=28.82 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=12.7
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
.....++.|.+++.||+++.||+++
T Consensus 82 ~~Ig~~a~I~~gv~Ig~~~~Ig~g~ 106 (139)
T cd03350 82 VFIGANCEVVEGVIVGKGAVLAAGV 106 (139)
T ss_pred CEECCCCEECCCCEECCCCEEcCCC
Confidence 3334445555555555555555544
No 193
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=36.66 E-value=19 Score=30.13 Aligned_cols=19 Identities=0% Similarity=0.127 Sum_probs=8.4
Q ss_pred CCccCCCceeCCcccccCC
Q 017849 345 NNIIHPSAELGSKTTVSSS 363 (365)
Q Consensus 345 ~~~i~~~~~i~~~~~ig~~ 363 (365)
++.|.++++||+++.||++
T Consensus 95 ~a~I~~gv~Ig~~~~Igag 113 (164)
T cd04646 95 KSFVGKNVIITDGCIIGAG 113 (164)
T ss_pred CCEECCCCEECCCCEEeCC
Confidence 3444444444444444443
No 194
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=36.13 E-value=23 Score=30.56 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=14.8
Q ss_pred CCCCCCccCCCceeCCcccccCCC
Q 017849 341 FSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
..+.++.|.++++||+++.||+++
T Consensus 138 ~ig~~~~i~~g~~Ig~~~~Iga~s 161 (192)
T PRK09677 138 WIGENVTILPGVSIGNGCIVGANS 161 (192)
T ss_pred EECCCCEEcCCCEECCCCEECCCC
Confidence 334455666666666666666665
No 195
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=35.25 E-value=24 Score=32.39 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=14.9
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
.+.+.++.|..+++||+++.||+++
T Consensus 200 V~IGaga~Ilggv~IG~~a~IGAgS 224 (273)
T PRK11132 200 VMIGAGAKILGNIEVGRGAKIGAGS 224 (273)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCC
Confidence 4444555556666666666666665
No 196
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.25 E-value=1.5e+02 Score=25.89 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=41.2
Q ss_pred CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCC
Q 017849 48 NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD 112 (365)
Q Consensus 48 gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D 112 (365)
+.+++++.++.+...+.+...++ ++++..+.-...+|-+.|++.....+.++.=+++..|
T Consensus 66 ~~~~~~amvS~s~DGEliA~~l~-----kfG~~~IRGSs~Kgg~~Alr~l~k~Lk~G~~i~itpD 125 (214)
T COG2121 66 KGKKIYAMVSPSRDGELIARLLE-----KFGLRVIRGSSNKGGISALRALLKALKQGKSIAITPD 125 (214)
T ss_pred CCCcEEEEEcCCcCHHHHHHHHH-----HcCceEEeccCCcchHHHHHHHHHHHhCCCcEEEcCC
Confidence 34556666664433444444444 4677777766788999999999999987776777777
No 197
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=34.26 E-value=25 Score=29.41 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=5.8
Q ss_pred CccCCCceeCCcccc
Q 017849 346 NIIHPSAELGSKTTV 360 (365)
Q Consensus 346 ~~i~~~~~i~~~~~i 360 (365)
+.|+++|.||.++.|
T Consensus 102 v~Ig~~~~IgagsvV 116 (164)
T cd04646 102 VIITDGCIIGAGCKL 116 (164)
T ss_pred CEECCCCEEeCCeEE
Confidence 333444443333333
No 198
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=34.03 E-value=2.3e+02 Score=27.62 Aligned_cols=126 Identities=15% Similarity=0.186 Sum_probs=69.5
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceeceeC-CcchHHHHHHHHHhC----CCCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849 5 VVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (365)
Q Consensus 5 avIlA~G~g~rl~pL~t~~~pK~llpv~-gkplI~~~L~~l~~~----gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v 79 (365)
.+=|-||.|+-| +-..||.+++|- |...+|-++.+.... +++--.|+.+.-.-.+....+++.+...+..+
T Consensus 106 vlKLNGGlGttm----Gc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~kv~i 181 (498)
T KOG2638|consen 106 VLKLNGGLGTTM----GCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSKVDI 181 (498)
T ss_pred EEEecCCcCCcc----ccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCceeE
Confidence 445889999999 788999999995 568777776665433 34333344332222234555555443322111
Q ss_pred EEE-----------------E--cC---C---CCChH---HHHHHH--HHH-cC--CCcEEEEeCCccc-CCChHHHHHH
Q 017849 80 EVA-----------------T--VP---E---DVGTA---GALRAI--AHH-LT--AKDVLVVSGDLVS-DVPPGAVTAA 125 (365)
Q Consensus 80 ~i~-----------------~--~~---~---~~gt~---~al~~~--~~~-i~--~~~~lv~~~D~i~-~~~l~~~l~~ 125 (365)
..+ . .+ + +.|.| +++..- ++. +. .++++|-+.|.+. ..|+. +++.
T Consensus 182 ~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~-ILn~ 260 (498)
T KOG2638|consen 182 KTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN-ILNH 260 (498)
T ss_pred EEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH-HHHH
Confidence 110 0 01 0 23444 444432 232 22 4678889999665 45664 5666
Q ss_pred HHhcCCeEEE
Q 017849 126 HRRHDAVVTA 135 (365)
Q Consensus 126 h~~~~a~~t~ 135 (365)
..+.+..-.|
T Consensus 261 ~i~~~~ey~M 270 (498)
T KOG2638|consen 261 VINNNIEYLM 270 (498)
T ss_pred HhcCCCceEE
Confidence 6666555444
No 199
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=33.70 E-value=2.8e+02 Score=23.53 Aligned_cols=87 Identities=25% Similarity=0.318 Sum_probs=47.3
Q ss_pred eceeCC---cchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC-C
Q 017849 28 LLPVAN---RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT-A 103 (365)
Q Consensus 28 llpv~g---kplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~-~ 103 (365)
|+|..+ -|=+.-.+..+..+|++ ++|+.+... ..+..+.. ++++.++.- -.+-.+-+++.|+..+. +
T Consensus 39 Lv~wd~~~~tpe~~~W~~e~k~~gi~-v~vvSNn~e--~RV~~~~~-----~l~v~fi~~-A~KP~~~~fr~Al~~m~l~ 109 (175)
T COG2179 39 LVPWDNPDATPELRAWLAELKEAGIK-VVVVSNNKE--SRVARAAE-----KLGVPFIYR-AKKPFGRAFRRALKEMNLP 109 (175)
T ss_pred eecccCCCCCHHHHHHHHHHHhcCCE-EEEEeCCCH--HHHHhhhh-----hcCCceeec-ccCccHHHHHHHHHHcCCC
Confidence 555544 35555556667777774 555555332 24433332 456777652 23455677888877654 2
Q ss_pred CcEEEEeCCcccCCChHHHHHHHH
Q 017849 104 KDVLVVSGDLVSDVPPGAVTAAHR 127 (365)
Q Consensus 104 ~~~lv~~~D~i~~~~l~~~l~~h~ 127 (365)
..=+++-||.++ .+++..++
T Consensus 110 ~~~vvmVGDqL~----TDVlggnr 129 (175)
T COG2179 110 PEEVVMVGDQLF----TDVLGGNR 129 (175)
T ss_pred hhHEEEEcchhh----hhhhcccc
Confidence 234556678553 34555554
No 200
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=33.14 E-value=26 Score=29.77 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=20.7
Q ss_pred CCCCCCCCCccCCCceeCCcccccCCCC
Q 017849 338 GYNFSAQNNIIHPSAELGSKTTVSSSLC 365 (365)
Q Consensus 338 ~~~~~~~~~~i~~~~~i~~~~~ig~~~~ 365 (365)
...|.+-+++|-++|+||+.+.||++++
T Consensus 94 ~~~lIGmgA~vldga~IG~~~iVgAgal 121 (176)
T COG0663 94 DNVLIGMGATVLDGAVIGDGSIVGAGAL 121 (176)
T ss_pred CCcEEecCceEeCCcEECCCcEEccCCc
Confidence 3456666777888888888888888763
No 201
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=33.11 E-value=30 Score=27.87 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=3.5
Q ss_pred CCCccCCCc
Q 017849 344 QNNIIHPSA 352 (365)
Q Consensus 344 ~~~~i~~~~ 352 (365)
++++|+++|
T Consensus 54 ~~~~I~~~~ 62 (139)
T cd03350 54 KNVHLSAGA 62 (139)
T ss_pred CCCEECCCC
Confidence 334343333
No 202
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=32.45 E-value=31 Score=26.35 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=15.1
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
....+++.|+.+|.|..+++||.++
T Consensus 57 v~Ig~~~~ig~~~~i~~g~~Ig~~~ 81 (107)
T cd05825 57 IVIGDGAWVAAEAFVGPGVTIGEGA 81 (107)
T ss_pred EEECCCCEECCCCEECCCCEECCCC
Confidence 3445556666666666666666654
No 203
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=32.16 E-value=26 Score=29.38 Aligned_cols=25 Identities=12% Similarity=-0.048 Sum_probs=15.9
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
...++++.|+++|.|.++++||.++
T Consensus 119 v~IG~~~~Ig~~a~I~~gv~Ig~~~ 143 (169)
T cd03357 119 ITIGDNVWIGGGVIILPGVTIGDNS 143 (169)
T ss_pred cEeCCCEEECCCCEEeCCCEECCCC
Confidence 3445566666666666666666665
No 204
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=32.13 E-value=31 Score=30.12 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=13.6
Q ss_pred CCCCCccCCCceeCCcccccCCC
Q 017849 342 SAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 342 ~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
.+.+++|.++++||+++.||+++
T Consensus 117 Ig~~~~I~~gv~Ig~~~~I~~gs 139 (204)
T TIGR03308 117 IGHGAVILPGVTIGNGAVIAAGA 139 (204)
T ss_pred ECCCCEECCCCEECCCCEECCCC
Confidence 34455566666666666666654
No 205
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=31.67 E-value=29 Score=28.46 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=13.6
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
...++++.|+.+|.|..+++||+++
T Consensus 74 ~~Ig~~~~Ig~~~~i~~gv~Ig~~~ 98 (145)
T cd03349 74 VIIGNDVWIGHGATILPGVTIGDGA 98 (145)
T ss_pred cEECCCCEECCCCEEeCCCEECCCC
Confidence 3344455555555555555656554
No 206
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=31.38 E-value=29 Score=31.71 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=8.3
Q ss_pred HHHHHHHHHHcCCCc
Q 017849 91 AGALRAIAHHLTAKD 105 (365)
Q Consensus 91 ~~al~~~~~~i~~~~ 105 (365)
-+++..+++.+....
T Consensus 26 ~~~~~~~~~~ld~g~ 40 (269)
T TIGR00965 26 KEAVNEVIALLDSGA 40 (269)
T ss_pred HHHHHHHHHHhcCCC
Confidence 355666666665443
No 207
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=30.96 E-value=34 Score=31.27 Aligned_cols=10 Identities=0% Similarity=0.169 Sum_probs=3.8
Q ss_pred eCCcccccCC
Q 017849 354 LGSKTTVSSS 363 (365)
Q Consensus 354 i~~~~~ig~~ 363 (365)
||+++.||++
T Consensus 176 IgDnv~IGa~ 185 (269)
T TIGR00965 176 IEDNCFIGAR 185 (269)
T ss_pred ECCCCEECCC
Confidence 3333333333
No 208
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=30.87 E-value=3.4e+02 Score=26.26 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=47.6
Q ss_pred eeceeCCcc---hHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCC----hHHHHHHHH
Q 017849 27 ALLPVANRP---VLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVG----TAGALRAIA 98 (365)
Q Consensus 27 ~llpv~gkp---lI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~g----t~~al~~~~ 98 (365)
-+.-+|-|| -+.-++..+.+.+ ++.++++|+.+...+....++...-.......+........ |+..+....
T Consensus 6 v~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~ 85 (383)
T COG0381 6 VLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLS 85 (383)
T ss_pred EEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHH
Confidence 334444454 2334456677776 99999999866433344444543211101111111111122 222332222
Q ss_pred HHcC--CCcEEEEeCCcccCCChHHHHHHHHh
Q 017849 99 HHLT--AKDVLVVSGDLVSDVPPGAVTAAHRR 128 (365)
Q Consensus 99 ~~i~--~~~~lv~~~D~i~~~~l~~~l~~h~~ 128 (365)
+.+. ..|++++.||.-+. |...+.++..
T Consensus 86 ~vl~~~kPD~VlVhGDT~t~--lA~alaa~~~ 115 (383)
T COG0381 86 KVLEEEKPDLVLVHGDTNTT--LAGALAAFYL 115 (383)
T ss_pred HHHHhhCCCEEEEeCCcchH--HHHHHHHHHh
Confidence 2222 35799999996554 4434444443
No 209
>PF13562 NTP_transf_4: Sugar nucleotidyl transferase
Probab=30.58 E-value=2e+02 Score=23.92 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=35.3
Q ss_pred EEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEec
Q 017849 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVE 57 (365)
Q Consensus 6 vIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~ 57 (365)
|+.=+..-.+|.|| |..||..=+.+|-..+-+.....+. ...+..++.
T Consensus 3 ilFdd~~~~~L~Pl-t~tRPV~dlr~Gi~TlrEkwe~~l~---~~~~s~~tr 50 (156)
T PF13562_consen 3 ILFDDEARNNLLPL-TFTRPVADLRCGILTLREKWEKYLG---AATVSFHTR 50 (156)
T ss_pred EEEcCCChhcccCc-ccccCHHHHhhhHHHHHHHHHHHcC---CCceEEEhh
Confidence 34444446789999 9999999999999899888877774 334555554
No 210
>PRK10502 putative acyl transferase; Provisional
Probab=30.09 E-value=32 Score=29.33 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=16.9
Q ss_pred CCCCCCccCCCceeCCcccccCCCC
Q 017849 341 FSAQNNIIHPSAELGSKTTVSSSLC 365 (365)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~ig~~~~ 365 (365)
..+.++.|+.+|.|.++++||++++
T Consensus 126 ~Igd~~~Ig~~a~I~~Gv~Ig~~~v 150 (182)
T PRK10502 126 VIGEGCWLAADVFVAPGVTIGSGAV 150 (182)
T ss_pred EEcCCcEEcCCCEEcCCCEECCCCE
Confidence 4456667777777777777777653
No 211
>PRK10481 hypothetical protein; Provisional
Probab=29.19 E-value=4.1e+02 Score=23.58 Aligned_cols=85 Identities=13% Similarity=0.001 Sum_probs=50.7
Q ss_pred chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC--CCcEEEEeCC
Q 017849 35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT--AKDVLVVSGD 112 (365)
Q Consensus 35 plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D 112 (365)
.+|...+..+.. -.++.|++.+. +++..+.+.|......+.+.....+.++.+.+..+.+.+. .-+++++.|=
T Consensus 117 ~~i~~lv~Al~~--g~riGVitP~~---~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~ 191 (224)
T PRK10481 117 RILPPLVAAIVG--GHQVGVIVPVE---EQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCL 191 (224)
T ss_pred hhHHHHHHHhcC--CCeEEEEEeCH---HHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCC
Confidence 455666666543 38999999865 3566666655433333444433333466667777765554 3569999998
Q ss_pred cccCCChHHHHHH
Q 017849 113 LVSDVPPGAVTAA 125 (365)
Q Consensus 113 ~i~~~~l~~~l~~ 125 (365)
-+.. ...+.++.
T Consensus 192 G~~~-~~~~~le~ 203 (224)
T PRK10481 192 GYHQ-RHRDLLQK 203 (224)
T ss_pred CcCH-HHHHHHHH
Confidence 6665 44544444
No 212
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=28.92 E-value=36 Score=31.17 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=4.3
Q ss_pred ccCCCceeCCc
Q 017849 347 IIHPSAELGSK 357 (365)
Q Consensus 347 ~i~~~~~i~~~ 357 (365)
+|+++|.||.+
T Consensus 178 iIgDnv~IGa~ 188 (272)
T PRK11830 178 IIEDNCFIGAR 188 (272)
T ss_pred EEcCCCEECCC
Confidence 33334444333
No 213
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=28.62 E-value=34 Score=32.41 Aligned_cols=15 Identities=7% Similarity=-0.148 Sum_probs=11.0
Q ss_pred CcccceeeeeCHHHH
Q 017849 206 DLMDAHMYAFNRSVL 220 (365)
Q Consensus 206 ~l~~~giyi~s~~vl 220 (365)
....++.++++++..
T Consensus 51 ~~~~A~a~Iv~~d~~ 65 (343)
T PRK00892 51 ATTKAGAVIVSPDDA 65 (343)
T ss_pred hccCCeEEEechhhh
Confidence 345778899988854
No 214
>PRK10191 putative acyl transferase; Provisional
Probab=28.53 E-value=33 Score=28.22 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=8.5
Q ss_pred CccCCCceeCCcccccCCC
Q 017849 346 NIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 346 ~~i~~~~~i~~~~~ig~~~ 364 (365)
+.+.++++||+++.||+++
T Consensus 105 ~~I~~~v~IG~~~~Igags 123 (146)
T PRK10191 105 VIILGDITIGNNVTVGAGS 123 (146)
T ss_pred CEEeCCCEECCCCEECCCC
Confidence 3344444444444444443
No 215
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=28.46 E-value=37 Score=29.58 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=15.8
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
...+.++.|+.+|+|++++.||+++
T Consensus 109 ~~Ig~~~~Ig~~~~I~~gv~Ig~~~ 133 (204)
T TIGR03308 109 VTIGHDVWIGHGAVILPGVTIGNGA 133 (204)
T ss_pred eEECCCCEECCCCEECCCCEECCCC
Confidence 3345566666666666666666665
No 216
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=28.27 E-value=2e+02 Score=25.15 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=30.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCccc-CCC-hHHHHHHHHh
Q 017849 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVS-DVP-PGAVTAAHRR 128 (365)
Q Consensus 79 v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~-~~~-l~~~l~~h~~ 128 (365)
+.+....+..+.+.++-.+++.-+.+.++.++-|+.. +.+ +.++++.+.+
T Consensus 31 i~i~~~~~~~s~~~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~ 82 (217)
T PF13712_consen 31 IEIDNVRNAKSMAAAYNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEE 82 (217)
T ss_dssp EEEE-SSS-S-TTTHHHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH
T ss_pred EEEeccCCCcCHHHHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhh
Confidence 4444444557777788788777666778888999644 455 5677777744
No 217
>PLN02472 uncharacterized protein
Probab=27.51 E-value=38 Score=30.57 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=13.7
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
...+.+++|.++++||.+++||+++
T Consensus 150 v~IG~~svI~~gavIg~~~~Ig~gs 174 (246)
T PLN02472 150 CIIGQHSILMEGSLVETHSILEAGS 174 (246)
T ss_pred CEECCCCEECCCCEECCCCEECCCC
Confidence 3444455555556666666666553
No 218
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=27.19 E-value=37 Score=28.34 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=11.5
Q ss_pred CCCCccCCCceeCCcccccCCC
Q 017849 343 AQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 343 ~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
..++.|..+++||+++.||+++
T Consensus 123 g~~a~I~~~v~IG~~~~Iga~s 144 (162)
T TIGR01172 123 GAGAKVLGNIEVGENAKIGANS 144 (162)
T ss_pred cCCCEEECCcEECCCCEECCCC
Confidence 3344444555555555555554
No 219
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=27.18 E-value=1.1e+02 Score=29.09 Aligned_cols=53 Identities=13% Similarity=0.259 Sum_probs=34.2
Q ss_pred cceEEEEcCCCCCCCCCCC----------CC--CCC--ceeceeCCcchHHHHHHHHHhCCCCeEEEEe
Q 017849 2 DFQVVVLAGGTSKKLVPLV----------SK--EVP--KALLPVANRPVLSYVLEQLELSNIKDLIVVV 56 (365)
Q Consensus 2 ~~~avIlA~G~g~rl~pL~----------t~--~~p--K~llpv~gkplI~~~L~~l~~~gi~~v~vv~ 56 (365)
.+.+||+.| .|||...-. .. +.| -+++.+ ..|-|.-.++.|...|.++|+|+-
T Consensus 5 ~~~aiLLvg-HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~-~ePsl~eal~~l~~~G~~~IvVvP 71 (335)
T PRK05782 5 SNTAIILIG-HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEF-AEPNWRSLLNEIIKEGYRRVIIAL 71 (335)
T ss_pred CCceEEEEe-cCCCChHHHHHHHHHHHHHHhccCCceEEEEecc-CCCCHHHHHHHHHHCCCCEEEEec
Confidence 467888886 777752110 01 111 123333 459999999999999999987763
No 220
>PRK10191 putative acyl transferase; Provisional
Probab=27.08 E-value=38 Score=27.87 Aligned_cols=24 Identities=4% Similarity=0.045 Sum_probs=16.0
Q ss_pred CCCCCCccCCCceeCCcccccCCC
Q 017849 341 FSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
..++++.|+++|.|.++++||+++
T Consensus 94 ~IGd~~~Ig~~~~I~~~v~IG~~~ 117 (146)
T PRK10191 94 HIGNGVELGANVIILGDITIGNNV 117 (146)
T ss_pred EECCCcEEcCCCEEeCCCEECCCC
Confidence 345666677777777777777665
No 221
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=26.52 E-value=45 Score=25.34 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=16.8
Q ss_pred CCCCCCCCCccCCCceeCCcccccCCC
Q 017849 338 GYNFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 338 ~~~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
+..+.+.++.|+++|.|++.+.||+++
T Consensus 28 g~v~IG~~~~Ig~~~~I~~~v~IG~~~ 54 (101)
T cd05635 28 GPVYIGPGSRVKMGARIYGNTTIGPTC 54 (101)
T ss_pred CCCEECCCCEECCCCEEeCcCEECCCC
Confidence 444555666666666666666666655
No 222
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=25.57 E-value=4.7e+02 Score=23.37 Aligned_cols=85 Identities=8% Similarity=0.044 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc---C--C--C--CChHHHHHHHHHHcC--CC
Q 017849 36 VLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV---P--E--D--VGTAGALRAIAHHLT--AK 104 (365)
Q Consensus 36 lI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~---~--~--~--~gt~~al~~~~~~i~--~~ 104 (365)
-..=+++.|...|+++|.|++.|.+ .+.+.+..++. ..+++++.. . . . .=+.+.+..+...+. +-
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~---~v~~~~~~~l~-~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~a 182 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTP---ETSRPMAQYFA-VRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDA 182 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcH---HHHHHHHHHHH-hCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCC
Confidence 3455677788889999999999753 45555544432 234554432 1 0 1 112345555543332 34
Q ss_pred cEEEEeCCcccCCChHHHHH
Q 017849 105 DVLVVSGDLVSDVPPGAVTA 124 (365)
Q Consensus 105 ~~lv~~~D~i~~~~l~~~l~ 124 (365)
+-+++.|-.+...++-+-++
T Consensus 183 DAifisCTnLrt~~vi~~lE 202 (239)
T TIGR02990 183 DALFLSCTALRAATCAQRIE 202 (239)
T ss_pred CEEEEeCCCchhHHHHHHHH
Confidence 57777787666555444343
No 223
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=25.57 E-value=36 Score=34.69 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=14.4
Q ss_pred CcchhhhhhccCCCcccccc
Q 017849 267 DKVSYRILANASTPSFHELY 286 (365)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~ 286 (365)
..++.+++.+|..|.+++..
T Consensus 283 d~vSkDiI~RW~YP~Vpd~~ 302 (673)
T KOG1461|consen 283 DLVSKDIIQRWTYPLVPDIN 302 (673)
T ss_pred HHHHHHHHHhhccccccccc
Confidence 34567778888888887754
No 224
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=25.51 E-value=44 Score=29.13 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=14.5
Q ss_pred CCCCCCccCCCceeCCcccccCCC
Q 017849 341 FSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
..+.++.|+.+|.|.++++||+++
T Consensus 133 ~IGd~v~IG~~~~I~~gv~IG~~~ 156 (203)
T PRK09527 133 TIGNNVWIGSHVVINPGVTIGDNS 156 (203)
T ss_pred EECCCcEECCCCEEcCCCEECCCC
Confidence 344556666666666666666655
No 225
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=25.43 E-value=42 Score=28.87 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=15.4
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
...++++.|+.+|.|.++++||+++
T Consensus 131 v~Ig~~~~ig~~~~i~~g~~Ig~~~ 155 (192)
T PRK09677 131 VVIGQRVWIGENVTILPGVSIGNGC 155 (192)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCC
Confidence 3345566666666666666666665
No 226
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=25.05 E-value=43 Score=27.54 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=8.0
Q ss_pred CCccCCCceeCCcccccCC
Q 017849 345 NNIIHPSAELGSKTTVSSS 363 (365)
Q Consensus 345 ~~~i~~~~~i~~~~~ig~~ 363 (365)
+++|.+++.||+++.||++
T Consensus 90 ~~~I~~g~~Ig~~~~Ig~~ 108 (155)
T cd04745 90 NAVVMDGAVIGEESIVGAM 108 (155)
T ss_pred CCEEeCCCEECCCCEECCC
Confidence 3344444444444444443
No 227
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=24.92 E-value=43 Score=30.68 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=7.5
Q ss_pred HHHHHHHHHcCCCc
Q 017849 92 GALRAIAHHLTAKD 105 (365)
Q Consensus 92 ~al~~~~~~i~~~~ 105 (365)
+++..+++.+..+.
T Consensus 29 ~~~~~~~~~l~~g~ 42 (272)
T PRK11830 29 EAVEEVIDLLDSGE 42 (272)
T ss_pred HHHHHHHHHhcCCC
Confidence 55555555555443
No 228
>PLN02739 serine acetyltransferase
Probab=24.61 E-value=42 Score=31.88 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=12.5
Q ss_pred CCCCCCccCCCceeCCcccccCCC
Q 017849 341 FSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
+.+.++.|..++.||+++.||+++
T Consensus 265 ~IGagA~IlG~V~IGd~aiIGAGS 288 (355)
T PLN02739 265 LLGACVTILGNISIGAGAMVAAGS 288 (355)
T ss_pred EEcCCCEEeCCeEECCCCEECCCC
Confidence 334444444555555555666554
No 229
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=24.56 E-value=53 Score=27.77 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=9.7
Q ss_pred CCCccCCCceeCCcccccCC
Q 017849 344 QNNIIHPSAELGSKTTVSSS 363 (365)
Q Consensus 344 ~~~~i~~~~~i~~~~~ig~~ 363 (365)
.++.|+++|.||+.+.||++
T Consensus 128 ~~~~i~~~~~ig~~~~i~~~ 147 (201)
T TIGR03570 128 TGAIVEHDCVIGDYVHIAPG 147 (201)
T ss_pred CCCEEcCCCEECCCCEECCC
Confidence 34444444555555555544
No 230
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=24.39 E-value=50 Score=31.54 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=14.2
Q ss_pred ccCCCCCCCCCCccCCCceeCCcccccCCC
Q 017849 335 HLSGYNFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 335 ~~~~~~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
.+.+..+.+.++.|+++|.|++.|.||++|
T Consensus 257 ~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~ 286 (358)
T COG1208 257 YIIGPVVIGPGAKIGPGALIGPYTVIGEGV 286 (358)
T ss_pred eEeCCEEECCCCEECCCCEECCCcEECCCC
Confidence 334445555555444444444444444443
No 231
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=24.28 E-value=1.1e+02 Score=23.47 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.8
Q ss_pred CCcchHHHHHHHHHhCCCCeEEEE
Q 017849 32 ANRPVLSYVLEQLELSNIKDLIVV 55 (365)
Q Consensus 32 ~gkplI~~~L~~l~~~gi~~v~vv 55 (365)
.+.|-|+..++.+...|+++|+++
T Consensus 39 E~~P~i~~~l~~l~~~G~~~i~lv 62 (103)
T cd03413 39 EGYPGLDDVLAKLKKAGIKKVTLM 62 (103)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEE
Confidence 378999999999999999988776
No 232
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=24.27 E-value=39 Score=28.61 Aligned_cols=27 Identities=11% Similarity=-0.022 Sum_probs=19.0
Q ss_pred CCCCCCCCccCCCceeCCcccccCCCC
Q 017849 339 YNFSAQNNIIHPSAELGSKTTVSSSLC 365 (365)
Q Consensus 339 ~~~~~~~~~i~~~~~i~~~~~ig~~~~ 365 (365)
....++++-|+.+|.|.++++||.+++
T Consensus 124 ~v~IG~~vwIG~~a~IlpGV~IG~gav 150 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPGVTIGEGAV 150 (190)
T ss_pred CeEECCCeEEcCccEECCCEEECCCcE
Confidence 345567777777777777777777763
No 233
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=24.01 E-value=49 Score=24.86 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=10.5
Q ss_pred CCCccCCCceeCCcccccCCC
Q 017849 344 QNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 344 ~~~~i~~~~~i~~~~~ig~~~ 364 (365)
.++.+.+++.|++++.||+++
T Consensus 69 ~~~~i~~~~~ig~~~~i~~~~ 89 (109)
T cd04647 69 ANVVILPGVTIGDGAVVGAGS 89 (109)
T ss_pred CCCEEcCCCEECCCCEECCCC
Confidence 344445555555555555543
No 234
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=23.69 E-value=47 Score=27.47 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=15.8
Q ss_pred CCCCCCCccCCCceeCCcccccCCC
Q 017849 340 NFSAQNNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~~~~~ig~~~ 364 (365)
...+.++.|.+++.||++++||+++
T Consensus 136 ~~ig~~~~i~~g~~ig~~~~i~ags 160 (163)
T cd05636 136 VKTGINVSLNPGVKIGPGSWVYPGC 160 (163)
T ss_pred eEECCCcEECCCcEECCCCEECCCc
Confidence 3444556666667777777777665
No 235
>PLN02739 serine acetyltransferase
Probab=23.46 E-value=53 Score=31.23 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=6.7
Q ss_pred ccCCCceeCCcccccC
Q 017849 347 IIHPSAELGSKTTVSS 362 (365)
Q Consensus 347 ~i~~~~~i~~~~~ig~ 362 (365)
+|+++|+||++++|+.
T Consensus 227 VIG~~avIGdnv~I~~ 242 (355)
T PLN02739 227 VIGETAVIGDRVSILH 242 (355)
T ss_pred EECCCCEECCCCEEcC
Confidence 3444444444444433
No 236
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=23.18 E-value=43 Score=30.18 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=6.9
Q ss_pred CCCCCCCccCCCceeC
Q 017849 340 NFSAQNNIIHPSAELG 355 (365)
Q Consensus 340 ~~~~~~~~i~~~~~i~ 355 (365)
...++++.|+++|+|+
T Consensus 48 v~IG~~~~I~~~a~I~ 63 (254)
T cd03351 48 TTIGKNNRIFPFASIG 63 (254)
T ss_pred eEECCCCEEecceeec
Confidence 3334444444444443
No 237
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=22.38 E-value=4.1e+02 Score=21.25 Aligned_cols=91 Identities=18% Similarity=0.076 Sum_probs=51.4
Q ss_pred ceeCCc-chHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCCc
Q 017849 29 LPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (365)
Q Consensus 29 lpv~gk-plI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~ 105 (365)
+|.-|+ ..|..+|+.+.+.... +|+|+-+... +...+.+.........+.........|.+.+...+......+.
T Consensus 9 ip~~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~--d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 86 (291)
T COG0463 9 IPTYNEEEYLPEALESLLNQTYKDFEIIVVDDGST--DGTTEIAIEYGAKDVRVIRLINERNGGLGAARNAGLEYARGDY 86 (291)
T ss_pred EeccchhhhHHHHHHHHHhhhhcceEEEEEeCCCC--CChHHHHHHHhhhcceEEEeecccCCChHHHHHhhHHhccCCE
Confidence 444444 7788888888776543 5555543221 2222333322111112323333456888888888888777778
Q ss_pred EEEEeCCcccCCChHH
Q 017849 106 VLVVSGDLVSDVPPGA 121 (365)
Q Consensus 106 ~lv~~~D~i~~~~l~~ 121 (365)
++.+.+|.+.+..+..
T Consensus 87 ~~~~d~d~~~~~~~~~ 102 (291)
T COG0463 87 IVFLDADDQHPPELIP 102 (291)
T ss_pred EEEEccCCCCCHHHHH
Confidence 8889999763333444
No 238
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=22.36 E-value=7.1e+02 Score=25.03 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=47.8
Q ss_pred eceeCCc--chHHHHHHHHHhCC------CCeEEEEecCcchHH---HHHHHHHh---hhcCCcceEEEEcC-CCCChHH
Q 017849 28 LLPVANR--PVLSYVLEQLELSN------IKDLIVVVEGADAAL---RVGGWISA---AYVDRLHVEVATVP-EDVGTAG 92 (365)
Q Consensus 28 llpv~gk--plI~~~L~~l~~~g------i~~v~vv~~~~~~~~---~i~~~~~~---~~~~~~~v~i~~~~-~~~gt~~ 92 (365)
.+|+.|+ ..+..-|+++.+.- +.-++|+.......+ .+.+.+.. .+ ....+.++... +.-..+.
T Consensus 252 IvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~-~~~~i~~i~~~~~~fsr~~ 330 (499)
T PF05679_consen 252 IVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKY-PFSRIKWISVKTGEFSRGA 330 (499)
T ss_pred EEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhC-CccceEEEEecCCCccHHH
Confidence 4788887 66666666665542 222444443211111 22223332 22 12356666655 6667778
Q ss_pred HHHHHHHHcCCCcEEEEeCC--cccCCCh
Q 017849 93 ALRAIAHHLTAKDVLVVSGD--LVSDVPP 119 (365)
Q Consensus 93 al~~~~~~i~~~~~lv~~~D--~i~~~~l 119 (365)
+|..+.+.+.. +-|++.|| +.++.++
T Consensus 331 ~Ld~g~~~~~~-d~L~f~~Dvd~~f~~~f 358 (499)
T PF05679_consen 331 ALDVGAKKFPP-DSLLFFCDVDMVFTSDF 358 (499)
T ss_pred HHHhhcccCCC-CcEEEEEeCCcccCHHH
Confidence 88888776654 43444444 6666654
No 239
>PLN02694 serine O-acetyltransferase
Probab=21.81 E-value=50 Score=30.59 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=9.7
Q ss_pred CCccCCCceeCCcccccCCC
Q 017849 345 NNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 345 ~~~i~~~~~i~~~~~ig~~~ 364 (365)
++.|..+++||+++.||+++
T Consensus 224 gA~Ilggi~IGd~a~IGAgS 243 (294)
T PLN02694 224 GATILGNVKIGEGAKIGAGS 243 (294)
T ss_pred eeEECCCCEECCCCEECCCC
Confidence 33444444445555555554
No 240
>PLN02357 serine acetyltransferase
Probab=21.48 E-value=51 Score=31.44 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=6.6
Q ss_pred ccCCCceeCCcccccC
Q 017849 347 IIHPSAELGSKTTVSS 362 (365)
Q Consensus 347 ~i~~~~~i~~~~~ig~ 362 (365)
+|+++|+||++++|+.
T Consensus 248 VIGe~avIGdnV~I~~ 263 (360)
T PLN02357 248 VIGETAVVGNNVSILH 263 (360)
T ss_pred EECCCCEECCCCEEeC
Confidence 3444444444444433
No 241
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=21.44 E-value=45 Score=30.99 Aligned_cols=9 Identities=11% Similarity=0.006 Sum_probs=5.1
Q ss_pred eeEEEEEEe
Q 017849 299 THKCCVYIA 307 (365)
Q Consensus 299 ~~~~~~~~~ 307 (365)
.+|.-||+-
T Consensus 161 rVRlGAyLG 169 (319)
T TIGR03535 161 RVRLGAHLA 169 (319)
T ss_pred eeeeccEEC
Confidence 455566655
No 242
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=20.95 E-value=52 Score=32.48 Aligned_cols=9 Identities=0% Similarity=0.132 Sum_probs=4.3
Q ss_pred HHHHHHHhc
Q 017849 218 SVLQEVLDQ 226 (365)
Q Consensus 218 ~vl~~~~~~ 226 (365)
+++..++++
T Consensus 203 d~i~~l~~~ 211 (459)
T PRK14355 203 DIVAMAAAE 211 (459)
T ss_pred HHHHHHHHC
Confidence 455555443
No 243
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=20.76 E-value=50 Score=27.21 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=13.2
Q ss_pred CCccCCCceeCCcccccCCC
Q 017849 345 NNIIHPSAELGSKTTVSSSL 364 (365)
Q Consensus 345 ~~~i~~~~~i~~~~~ig~~~ 364 (365)
..|++++|.+.++++||+.|
T Consensus 107 kayvg~gv~vssgC~vGA~c 126 (190)
T KOG4042|consen 107 KAYVGDGVSVSSGCSVGAKC 126 (190)
T ss_pred eeEecCCcEEcCCceeccce
Confidence 35667777777777777654
No 244
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=20.55 E-value=65 Score=26.70 Aligned_cols=14 Identities=7% Similarity=0.098 Sum_probs=5.1
Q ss_pred CCCceeCCcccccC
Q 017849 349 HPSAELGSKTTVSS 362 (365)
Q Consensus 349 ~~~~~i~~~~~ig~ 362 (365)
+++++|.+++.|+|
T Consensus 117 ~~g~~V~~~~~i~~ 130 (161)
T cd03359 117 LDGTVVPPDTVIPP 130 (161)
T ss_pred CCCCEECCCCEeCC
Confidence 33333333333333
No 245
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=20.26 E-value=1.6e+02 Score=22.41 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=23.0
Q ss_pred eeCCcchHHHHHHHHHhCCCCeEEEEec
Q 017849 30 PVANRPVLSYVLEQLELSNIKDLIVVVE 57 (365)
Q Consensus 30 pv~gkplI~~~L~~l~~~gi~~v~vv~~ 57 (365)
..+|+|+.++.++.+.+.|+.-..++-+
T Consensus 15 ~~~g~~l~~~ll~~~~~~gi~GaTV~rg 42 (101)
T PF02641_consen 15 RWGGKPLYEWLLERAREAGIAGATVFRG 42 (101)
T ss_dssp EETTEEHHHHHHHHHHHTT-SEEEEEE-
T ss_pred ccCceEHHHHHHHHHHHCCCCeEEEEcc
Confidence 3579999999999999999998888754
No 246
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=20.17 E-value=52 Score=32.21 Aligned_cols=9 Identities=11% Similarity=0.231 Sum_probs=4.1
Q ss_pred HHHHHHHhc
Q 017849 218 SVLQEVLDQ 226 (365)
Q Consensus 218 ~vl~~~~~~ 226 (365)
.++..++++
T Consensus 196 ~~~~~l~~~ 204 (451)
T TIGR01173 196 DVIALAVAD 204 (451)
T ss_pred HHHHHHHHC
Confidence 444444433
No 247
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=20.00 E-value=69 Score=31.38 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=21.9
Q ss_pred eEEEEEEecCCceEEEeCCHHHHHHHhHHH
Q 017849 300 HKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (365)
Q Consensus 300 ~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~ 329 (365)
.++++|..+ .++|..|.++..|.+++..+
T Consensus 214 ~~v~~~~~~-~~~~~~I~t~~dl~~a~~~~ 242 (446)
T PRK14353 214 LRVAVVEAP-EDEVRGINSRAELAEAEAVW 242 (446)
T ss_pred CeEEEEecC-hhhcccCCCHHHHHHHHHHH
Confidence 467787763 35799999999998887533
Done!