Query 017851
Match_columns 365
No_of_seqs 143 out of 1234
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 9.5E-84 2.1E-88 608.3 32.1 359 7-365 5-375 (375)
2 PTZ00281 actin; Provisional 100.0 6.8E-83 1.5E-87 604.2 32.1 363 3-365 2-376 (376)
3 PTZ00466 actin-like protein; P 100.0 2.9E-82 6.3E-87 598.7 33.2 358 6-365 11-380 (380)
4 KOG0676 Actin and related prot 100.0 2.1E-83 4.5E-88 586.6 23.8 358 3-365 3-372 (372)
5 PTZ00004 actin-2; Provisional 100.0 1.9E-80 4.2E-85 588.2 32.1 362 4-365 3-378 (378)
6 PTZ00280 Actin-related protein 100.0 3.4E-74 7.4E-79 552.1 32.2 358 6-363 3-408 (414)
7 KOG0677 Actin-related protein 100.0 1.9E-75 4.1E-80 494.1 20.0 359 5-363 2-386 (389)
8 PF00022 Actin: Actin; InterP 100.0 1.3E-74 2.9E-79 554.0 25.9 356 4-365 1-393 (393)
9 smart00268 ACTIN Actin. ACTIN 100.0 8.4E-73 1.8E-77 537.6 31.7 357 8-365 2-373 (373)
10 KOG0679 Actin-related protein 100.0 1.3E-72 2.8E-77 501.0 23.6 358 2-364 6-425 (426)
11 cd00012 ACTIN Actin; An ubiqui 100.0 6E-70 1.3E-74 517.4 30.8 355 9-363 1-371 (371)
12 COG5277 Actin and related prot 100.0 1.1E-67 2.3E-72 500.7 27.2 362 4-365 3-444 (444)
13 KOG0680 Actin-related protein 100.0 9.4E-68 2E-72 459.3 23.2 350 6-365 2-399 (400)
14 KOG0681 Actin-related protein 100.0 2.3E-55 5E-60 405.0 21.1 352 7-363 23-638 (645)
15 KOG0678 Actin-related protein 100.0 1.1E-54 2.5E-59 378.2 16.1 356 7-363 4-408 (415)
16 KOG0797 Actin-related protein 100.0 2.1E-35 4.6E-40 271.2 18.7 293 66-365 178-615 (618)
17 PRK13930 rod shape-determining 100.0 7.2E-33 1.6E-37 259.8 14.1 295 10-339 11-328 (335)
18 PRK13927 rod shape-determining 100.0 2.9E-32 6.3E-37 255.5 15.6 294 9-339 7-324 (334)
19 TIGR00904 mreB cell shape dete 100.0 4.2E-30 9.1E-35 240.5 14.4 298 10-338 5-326 (333)
20 PRK13929 rod-share determining 100.0 2E-29 4.3E-34 235.6 15.0 290 9-336 6-323 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 6.2E-27 1.3E-31 214.4 14.1 292 9-338 3-320 (326)
22 PRK13928 rod shape-determining 99.9 4.5E-25 9.7E-30 206.7 15.7 299 1-339 1-323 (336)
23 COG1077 MreB Actin-like ATPase 99.8 6.9E-20 1.5E-24 162.3 11.4 298 8-337 7-329 (342)
24 TIGR02529 EutJ ethanolamine ut 99.5 2.3E-13 5E-18 121.0 15.3 198 70-335 28-238 (239)
25 PRK15080 ethanolamine utilizat 99.4 2.4E-11 5.2E-16 110.0 17.7 230 6-337 23-267 (267)
26 CHL00094 dnaK heat shock prote 99.3 4.5E-11 9.8E-16 120.7 13.4 222 80-339 112-376 (621)
27 TIGR01991 HscA Fe-S protein as 99.2 1.3E-10 2.9E-15 116.7 10.7 222 81-339 107-360 (599)
28 PLN03184 chloroplast Hsp70; Pr 99.2 3.8E-10 8.3E-15 114.6 13.9 222 80-339 149-413 (673)
29 PTZ00400 DnaK-type molecular c 99.2 4.4E-10 9.6E-15 114.1 14.0 202 102-339 174-415 (663)
30 PRK00290 dnaK molecular chaper 99.1 1.9E-10 4.1E-15 116.6 10.4 201 103-339 134-374 (627)
31 PRK01433 hscA chaperone protei 99.1 7.8E-10 1.7E-14 110.7 13.4 194 103-339 142-356 (595)
32 PRK13410 molecular chaperone D 99.1 5E-10 1.1E-14 113.5 11.9 201 103-339 136-376 (668)
33 TIGR02350 prok_dnaK chaperone 99.1 4.5E-10 9.8E-15 113.3 10.9 201 103-339 131-372 (595)
34 PRK13411 molecular chaperone D 99.1 9.4E-10 2E-14 111.6 12.0 206 103-339 134-376 (653)
35 PTZ00186 heat shock 70 kDa pre 99.1 1.5E-09 3.2E-14 109.7 13.3 205 103-339 161-401 (657)
36 PRK05183 hscA chaperone protei 99.1 8.1E-10 1.8E-14 111.4 11.1 220 81-339 127-376 (616)
37 PTZ00009 heat shock 70 kDa pro 99.1 2.2E-09 4.7E-14 109.1 14.0 202 103-339 141-381 (653)
38 PRK11678 putative chaperone; P 98.7 1.1E-07 2.5E-12 92.0 12.1 62 264-338 385-446 (450)
39 PF00012 HSP70: Hsp70 protein; 98.7 2.4E-08 5.3E-13 101.2 7.3 203 103-339 136-376 (602)
40 TIGR01174 ftsA cell division p 98.5 3.5E-07 7.7E-12 87.1 9.6 161 114-308 156-339 (371)
41 PRK09472 ftsA cell division pr 98.5 3.6E-07 7.9E-12 88.3 8.8 190 114-339 164-388 (420)
42 PRK13917 plasmid segregation p 98.2 2.8E-05 6.1E-10 73.0 14.5 175 7-186 2-233 (344)
43 COG0443 DnaK Molecular chapero 98.2 5.4E-05 1.2E-09 75.8 16.2 168 6-185 4-222 (579)
44 TIGR03739 PRTRC_D PRTRC system 98.0 5.7E-05 1.2E-09 70.4 11.6 171 12-186 2-215 (320)
45 PF11104 PilM_2: Type IV pilus 97.9 0.00024 5.1E-09 66.9 13.9 110 148-308 190-299 (340)
46 TIGR01175 pilM type IV pilus a 97.9 0.00063 1.4E-08 64.2 15.8 143 114-308 141-307 (348)
47 COG0849 ftsA Cell division ATP 97.8 4.8E-05 1E-09 72.4 7.1 188 114-339 163-380 (418)
48 COG4972 PilM Tfp pilus assembl 97.2 0.0094 2E-07 54.2 13.5 110 148-308 203-312 (354)
49 KOG0101 Molecular chaperones H 97.1 0.012 2.6E-07 58.5 14.1 205 103-339 144-383 (620)
50 KOG0104 Molecular chaperones G 96.8 0.025 5.3E-07 56.7 12.9 82 103-185 159-275 (902)
51 TIGR00241 CoA_E_activ CoA-subs 96.2 0.085 1.8E-06 47.2 12.1 43 286-336 206-248 (248)
52 PF06406 StbA: StbA protein; 95.9 0.0058 1.3E-07 56.9 3.0 98 87-185 81-212 (318)
53 KOG0100 Molecular chaperones G 95.7 0.1 2.2E-06 48.8 9.9 81 103-184 173-274 (663)
54 TIGR02261 benz_CoA_red_D benzo 93.3 0.065 1.4E-06 48.0 2.7 50 285-337 213-262 (262)
55 TIGR03192 benz_CoA_bzdQ benzoy 92.6 0.064 1.4E-06 48.8 1.8 49 282-338 238-287 (293)
56 TIGR03286 methan_mark_15 putat 92.0 0.074 1.6E-06 50.4 1.4 47 284-338 356-402 (404)
57 COG1924 Activator of 2-hydroxy 91.5 0.12 2.5E-06 48.2 2.1 44 287-338 346-389 (396)
58 TIGR02259 benz_CoA_red_A benzo 91.4 0.19 4.2E-06 47.4 3.5 52 283-337 381-432 (432)
59 PRK13317 pantothenate kinase; 90.9 0.21 4.6E-06 45.4 3.2 52 282-338 221-273 (277)
60 KOG0103 Molecular chaperones H 90.8 5.7 0.00012 40.1 13.0 84 101-185 136-246 (727)
61 PRK10719 eutA reactivating fac 88.3 1.2 2.6E-05 43.2 6.2 160 5-190 4-207 (475)
62 COG4820 EutJ Ethanolamine util 88.1 0.17 3.6E-06 43.0 0.3 141 125-332 115-267 (277)
63 PF06277 EutA: Ethanolamine ut 82.6 3.7 8E-05 39.9 6.4 160 8-190 4-204 (473)
64 PF01869 BcrAD_BadFG: BadF/Bad 79.8 0.29 6.3E-06 44.3 -1.9 66 264-337 206-271 (271)
65 COG2441 Predicted butyrate kin 77.7 5.2 0.00011 35.9 5.2 73 264-339 257-332 (374)
66 KOG0102 Molecular chaperones m 76.4 13 0.00028 36.7 7.9 81 103-184 161-261 (640)
67 PF03702 UPF0075: Uncharacteri 65.3 4 8.6E-05 38.7 1.9 26 284-309 285-310 (364)
68 PRK05082 N-acetylmannosamine k 60.1 11 0.00024 34.3 3.8 66 264-337 221-286 (291)
69 PRK13310 N-acetyl-D-glucosamin 55.7 14 0.0003 33.9 3.7 67 264-337 233-300 (303)
70 PRK09698 D-allose kinase; Prov 54.3 20 0.00044 32.8 4.6 67 264-337 224-294 (302)
71 PRK09557 fructokinase; Reviewe 54.0 16 0.00035 33.5 3.9 66 264-336 232-298 (301)
72 TIGR03367 queuosine_QueD queuo 53.7 15 0.00033 27.2 2.9 50 74-130 42-91 (92)
73 smart00842 FtsA Cell division 51.1 36 0.00079 28.7 5.3 22 72-93 36-57 (187)
74 cd08627 PI-PLCc_gamma1 Catalyt 44.9 41 0.00089 29.5 4.6 44 82-131 74-117 (229)
75 PTZ00340 O-sialoglycoprotein e 44.5 14 0.00031 34.6 1.9 50 284-338 264-319 (345)
76 PRK09585 anmK anhydro-N-acetyl 44.4 15 0.00033 34.8 2.0 23 285-307 288-310 (365)
77 cd08630 PI-PLCc_delta3 Catalyt 43.9 41 0.0009 30.1 4.6 44 82-131 74-117 (258)
78 cd08626 PI-PLCc_beta4 Catalyti 43.2 43 0.00092 30.0 4.6 46 81-132 75-120 (257)
79 cd08631 PI-PLCc_delta4 Catalyt 42.4 43 0.00093 30.0 4.5 44 82-131 74-117 (258)
80 cd08595 PI-PLCc_zeta Catalytic 42.4 43 0.00094 30.0 4.5 45 81-131 73-117 (257)
81 cd08632 PI-PLCc_eta1 Catalytic 42.2 46 0.001 29.7 4.6 44 82-131 74-117 (253)
82 TIGR00555 panK_eukar pantothen 42.2 26 0.00057 31.9 3.2 68 263-335 209-278 (279)
83 cd08594 PI-PLCc_eta Catalytic 42.1 47 0.001 29.2 4.5 45 81-131 73-117 (227)
84 COG0278 Glutaredoxin-related p 41.7 50 0.0011 24.9 4.0 72 264-348 4-78 (105)
85 cd08629 PI-PLCc_delta1 Catalyt 41.2 46 0.001 29.8 4.5 44 82-131 74-117 (258)
86 cd08593 PI-PLCc_delta Catalyti 41.1 46 0.001 29.9 4.5 45 81-131 73-117 (257)
87 cd08591 PI-PLCc_beta Catalytic 40.7 48 0.001 29.7 4.5 45 82-132 76-120 (257)
88 cd08592 PI-PLCc_gamma Catalyti 40.2 51 0.0011 29.0 4.5 44 82-131 74-117 (229)
89 cd08596 PI-PLCc_epsilon Cataly 40.1 50 0.0011 29.5 4.5 44 82-131 74-117 (254)
90 KOG2707 Predicted metalloprote 39.5 21 0.00046 33.3 2.1 74 264-339 288-362 (405)
91 cd08633 PI-PLCc_eta2 Catalytic 39.2 54 0.0012 29.3 4.6 44 82-131 74-117 (254)
92 PRK09417 mogA molybdenum cofac 39.1 24 0.00052 30.2 2.3 39 262-307 52-107 (193)
93 cd08598 PI-PLC1c_yeast Catalyt 38.2 56 0.0012 28.8 4.4 44 82-131 74-117 (231)
94 PF02782 FGGY_C: FGGY family o 34.8 32 0.0007 29.0 2.5 48 283-339 149-196 (198)
95 cd08597 PI-PLCc_PRIP_metazoa C 34.8 65 0.0014 29.0 4.4 44 82-131 74-117 (260)
96 cd08558 PI-PLCc_eukaryota Cata 34.1 72 0.0016 28.0 4.5 45 82-132 74-118 (226)
97 TIGR00744 ROK_glcA_fam ROK fam 33.9 48 0.001 30.5 3.7 51 287-337 255-308 (318)
98 TIGR00039 6PTHBS 6-pyruvoyl te 33.6 44 0.00096 26.2 2.9 50 74-130 44-95 (124)
99 COG0533 QRI7 Metal-dependent p 32.9 25 0.00054 32.8 1.5 51 284-339 262-318 (342)
100 cd08628 PI-PLCc_gamma2 Catalyt 31.8 82 0.0018 28.2 4.5 44 82-131 74-117 (254)
101 PRK00976 hypothetical protein; 31.3 46 0.001 30.9 3.0 58 264-338 251-310 (326)
102 cd08623 PI-PLCc_beta1 Catalyti 31.0 85 0.0018 28.2 4.5 45 82-132 76-121 (258)
103 PF03727 Hexokinase_2: Hexokin 30.6 38 0.00083 30.1 2.3 50 287-339 189-240 (243)
104 cd08599 PI-PLCc_plant Catalyti 30.0 82 0.0018 27.7 4.2 31 100-130 86-116 (228)
105 cd08624 PI-PLCc_beta2 Catalyti 28.9 95 0.0021 27.9 4.4 44 82-131 76-120 (261)
106 cd08625 PI-PLCc_beta3 Catalyti 28.2 90 0.002 28.1 4.2 44 82-131 76-120 (258)
107 TIGR01174 ftsA cell division p 28.1 94 0.002 29.4 4.7 22 72-93 37-58 (371)
108 COG0849 ftsA Cell division ATP 27.2 99 0.0021 30.0 4.5 58 8-93 7-64 (418)
109 PRK03011 butyrate kinase; Prov 26.6 64 0.0014 30.6 3.2 46 285-334 297-342 (358)
110 COG4962 CpaF Flp pilus assembl 25.4 2.7E+02 0.0058 26.3 6.8 28 285-315 174-201 (355)
111 smart00732 YqgFc Likely ribonu 23.9 83 0.0018 22.9 2.8 18 8-25 2-19 (99)
112 PLN02230 phosphoinositide phos 22.5 1.3E+02 0.0029 30.6 4.6 44 82-131 187-230 (598)
113 PRK11031 guanosine pentaphosph 22.1 3.7E+02 0.008 26.7 7.7 28 148-177 142-169 (496)
114 PLN02222 phosphoinositide phos 21.8 1.3E+02 0.0029 30.4 4.5 45 82-132 176-220 (581)
115 TIGR00103 DNA_YbaB_EbfC DNA-bi 21.7 31 0.00068 26.1 0.1 46 252-299 57-102 (102)
116 PLN02952 phosphoinositide phos 21.1 1.5E+02 0.0032 30.2 4.6 44 82-131 196-239 (599)
117 COG3967 DltE Short-chain dehyd 20.3 49 0.0011 28.7 0.9 19 285-303 6-25 (245)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=9.5e-84 Score=608.30 Aligned_cols=359 Identities=55% Similarity=1.016 Sum_probs=333.7
Q ss_pred CCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCCHHHHHH
Q 017851 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEK 86 (365)
Q Consensus 7 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~~~ 86 (365)
.++||||+||+++|+||||++.|+.++||++++|+......+...+++++|+++...+..+++++|+++|.|.|||.++.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~ 84 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI 84 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence 46899999999999999999999999999999987653222223457789999988888899999999999999999999
Q ss_pred HHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------CceEEEE
Q 017851 87 IWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------GVSHTVP 154 (365)
Q Consensus 87 ~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~~t~v~p 154 (365)
+|+|+|++.|.++|+++||+++|++++++..|++++|++||.|++|++++.++++|++|++ +.|+|+|
T Consensus 85 iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~P 164 (375)
T PTZ00452 85 IWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVP 164 (375)
T ss_pred HHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEE
Confidence 9999998999999999999999999999999999999999999999999999999999997 5789999
Q ss_pred eeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEcCC
Q 017851 155 IYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD 234 (365)
Q Consensus 155 V~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd 234 (365)
|+||+++.+++.++++||++++++|.++|.++++.+....+..++++||+++||++.+++++++.........+.|++||
T Consensus 165 V~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD 244 (375)
T PTZ00452 165 VFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD 244 (375)
T ss_pred EECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC
Confidence 99999999999999999999999999999999888877667889999999999999998877664443334567899999
Q ss_pred CcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCC
Q 017851 235 GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS 314 (365)
Q Consensus 235 ~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~ 314 (365)
|+.|.++.+||.+||+||+|+.++.+..||+++|.++|.+||+|+|+.|++||+|+||+|++|||.+||++||++++|..
T Consensus 245 g~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~ 324 (375)
T PTZ00452 245 GNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQ 324 (375)
T ss_pred CCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCccccccccC
Q 017851 315 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 365 (365)
Q Consensus 315 ~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k~~ 365 (365)
.+++|..+++|.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 325 ~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 325 LKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred ceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 899999999999999999999999999999999999999999999999997
No 2
>PTZ00281 actin; Provisional
Probab=100.00 E-value=6.8e-83 Score=604.15 Aligned_cols=363 Identities=90% Similarity=1.412 Sum_probs=338.1
Q ss_pred CCCCCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCCHH
Q 017851 3 DTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (365)
Q Consensus 3 ~~~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~ 82 (365)
.+|+.++||||+||+++|+||||++.|+.++||+++++++.....+.++.+.++|+++...+..+++++|+++|.|.|||
T Consensus 2 ~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd 81 (376)
T PTZ00281 2 DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD 81 (376)
T ss_pred CCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCHH
Confidence 57899999999999999999999999999999999998776443334456778999988777788999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------Cce
Q 017851 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------GVS 150 (365)
Q Consensus 83 ~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~~t 150 (365)
+++++|+++|++.|.++|+++||+++||+++++..|++++|++||.|+++++++.+++++++|++ +.|
T Consensus 82 ~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t 161 (376)
T PTZ00281 82 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVS 161 (376)
T ss_pred HHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceE
Confidence 99999999998899999999999999999999999999999999999999999999999999987 578
Q ss_pred EEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEE
Q 017851 151 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 230 (365)
Q Consensus 151 ~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 230 (365)
+|+||+||+++.+++.++++||++++++|+++|.+++..+....+.+++++||+++|||+.+++.+++.........+.|
T Consensus 162 ~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y 241 (376)
T PTZ00281 162 HTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 241 (376)
T ss_pred EEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeE
Confidence 99999999999999999999999999999999999888876666788999999999999988877766544334456789
Q ss_pred EcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhh
Q 017851 231 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISAL 310 (365)
Q Consensus 231 ~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~ 310 (365)
.+|||+.|.++.+||.+||+||+|+.++.+..+|+++|.++|.+||+|+|+.|++||+|+||+|++|||.+||++||+++
T Consensus 242 ~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~ 321 (376)
T PTZ00281 242 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTAL 321 (376)
T ss_pred ECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCccccccccC
Q 017851 311 APSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 365 (365)
Q Consensus 311 ~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k~~ 365 (365)
.|...++++..+++|.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 322 ~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 322 APSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred CCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 9988899999999999999999999999999999999999999999999999997
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=2.9e-82 Score=598.66 Aligned_cols=358 Identities=51% Similarity=0.962 Sum_probs=332.3
Q ss_pred CCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCCHHHHH
Q 017851 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (365)
Q Consensus 6 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~~ 85 (365)
+.++||||+||+++|+||||++.|+.++||++++++......+....++++|+++...++...+++|+++|+|.|||.++
T Consensus 11 ~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e 90 (380)
T PTZ00466 11 SNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDME 90 (380)
T ss_pred cCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHH
Confidence 45689999999999999999999999999999999876544343455788999998878888899999999999999999
Q ss_pred HHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------CceEEE
Q 017851 86 KIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------GVSHTV 153 (365)
Q Consensus 86 ~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~~t~v~ 153 (365)
.+|+++| +.|+++|.++||+++|++++++..|++++|++||.|++|++++.++++|++|++ +.|+|+
T Consensus 91 ~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~ 169 (380)
T PTZ00466 91 NIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCV 169 (380)
T ss_pred HHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEE
Confidence 9999998 889999999999999999999999999999999999999999999999999987 578999
Q ss_pred EeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEcC
Q 017851 154 PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP 233 (365)
Q Consensus 154 pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp 233 (365)
||+||+++.+++.++++||++++++|+++|.+++..+....+.++++++|+++|||+.++.++.+... .......|++|
T Consensus 170 PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~-~~~~~~~y~LP 248 (380)
T PTZ00466 170 SIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYILP 248 (380)
T ss_pred EEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhcc-ccccceeEECC
Confidence 99999999999999999999999999999999888777677788999999999999999876655332 22235789999
Q ss_pred CCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCC
Q 017851 234 DGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPS 313 (365)
Q Consensus 234 d~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~ 313 (365)
||+.|.++.+||.+||+||+|+.+|.+..||+++|.++|.+||+|+|+.|++||+|+||+|++|||.+||++||+++.|.
T Consensus 249 dg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~ 328 (380)
T PTZ00466 249 DGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPK 328 (380)
T ss_pred CCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCccccccccC
Q 017851 314 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 365 (365)
Q Consensus 314 ~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k~~ 365 (365)
..++++..+++|.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 329 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 329 DITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 8889999999999999999999999999999999999999999999999997
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.1e-83 Score=586.55 Aligned_cols=358 Identities=80% Similarity=1.309 Sum_probs=337.7
Q ss_pred CCCCCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCCHH
Q 017851 3 DTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (365)
Q Consensus 3 ~~~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~ 82 (365)
...+..+||||+||..+|+||||++.|+.++|+++++|++.....+...++.++|+++...+ .+++|+++|+|.|||
T Consensus 3 ~~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd 79 (372)
T KOG0676|consen 3 EADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWD 79 (372)
T ss_pred CcCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchH
Confidence 34667899999999999999999999999999999999988888888889999999998877 779999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------Cce
Q 017851 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------GVS 150 (365)
Q Consensus 83 ~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~~t 150 (365)
.++.||+|+|++.|.++|.++||+++|++++|+..||+++|++||.|++|++++..++++ |++ |.|
T Consensus 80 ~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt 157 (372)
T KOG0676|consen 80 DMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVT 157 (372)
T ss_pred HHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCce
Confidence 999999999999999999999999999999999999999999999999999999766555 655 678
Q ss_pred EEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEE
Q 017851 151 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 230 (365)
Q Consensus 151 ~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 230 (365)
+++||++|+++++++.++++||+++++|++..|.++|+.+....+.+++++||+++||++.+++++++...........|
T Consensus 158 ~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y 237 (372)
T KOG0676|consen 158 HVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSY 237 (372)
T ss_pred eeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhcccccccccccc
Confidence 99999999999999999999999999999999999998888888899999999999999999988887644444556679
Q ss_pred EcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhh
Q 017851 231 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISAL 310 (365)
Q Consensus 231 ~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~ 310 (365)
++|||+.|.++++||.+||+||+|+.+|.+..+|++++.++|.+||+|+|+.||+||+|+||++++|||.+||++||+.+
T Consensus 238 ~lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l 317 (372)
T KOG0676|consen 238 ELPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQAL 317 (372)
T ss_pred cCCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCccccccccC
Q 017851 311 APSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 365 (365)
Q Consensus 311 ~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k~~ 365 (365)
.|...+++|+.+|++.+++|+||||+|+++.|+++||||+||+|+|+++++||||
T Consensus 318 ~P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 318 APSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred CCCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 9999999999999999999999999999999999999999999999999999998
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.9e-80 Score=588.23 Aligned_cols=362 Identities=79% Similarity=1.295 Sum_probs=334.8
Q ss_pred CCCCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCCHHH
Q 017851 4 TEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (365)
Q Consensus 4 ~~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 83 (365)
-++.++||||+||+++|+||||++.|+.++||++++++++....+...+..++|+++...++...+++|+++|+|.|||.
T Consensus 3 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~ 82 (378)
T PTZ00004 3 VEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDD 82 (378)
T ss_pred CCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHH
Confidence 46778999999999999999999999999999999988764444444567789999887777788999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------CceE
Q 017851 84 MEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------GVSH 151 (365)
Q Consensus 84 ~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~~t~ 151 (365)
++.+|+++|.++|.+++.++||++++++++++..|+++++++||.|+++++++.+++++++|++ +.|+
T Consensus 83 ~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~ 162 (378)
T PTZ00004 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 162 (378)
T ss_pred HHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEE
Confidence 9999999998899999999999999999999999999999999999999999999999999987 5789
Q ss_pred EEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCC-cccEE
Q 017851 152 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSA-VEKSY 230 (365)
Q Consensus 152 v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~-~~~~~ 230 (365)
|+||+||+++.+++.++++||++++++|+++|.+++..+....+.+++++||+++|||+.+++++++....... ..+.|
T Consensus 163 v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y 242 (378)
T PTZ00004 163 TVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESY 242 (378)
T ss_pred EEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEE
Confidence 99999999999999999999999999999999998887776667889999999999999998877654332222 36789
Q ss_pred EcCCCcEEeeCCcccccccccCCCccCCCC-CCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHh
Q 017851 231 ELPDGQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISA 309 (365)
Q Consensus 231 ~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~-~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~ 309 (365)
.+|||+.|.++.+||.+||+||+|+.++.+ ..||+++|.++|.+||+|+|+.|++||+|+||+|++|||.+||++||++
T Consensus 243 ~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~ 322 (378)
T PTZ00004 243 ELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTT 322 (378)
T ss_pred ECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHH
Confidence 999999999999999999999999998888 8999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCccccccccC
Q 017851 310 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 365 (365)
Q Consensus 310 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k~~ 365 (365)
++|...+++|..+++|.+++|+|||++|++++|+++||||+||+|+|++++.||||
T Consensus 323 ~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 323 LAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred hCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 99988889999999999999999999999999999999999999999999999997
No 6
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=3.4e-74 Score=552.12 Aligned_cols=358 Identities=39% Similarity=0.729 Sum_probs=319.2
Q ss_pred CCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCcc---ccCCCccccccchhhhccCcceeeccccCCccCCHH
Q 017851 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM---VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (365)
Q Consensus 6 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~ 82 (365)
+.++||||+||+++|+||||++.|+.++||++++++..... .+....++++|+++...+..+.+++|+++|.|.|||
T Consensus 3 ~~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd 82 (414)
T PTZ00280 3 TLPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWD 82 (414)
T ss_pred CCCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHH
Confidence 35689999999999999999999999999999998663211 111234678999998888889999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC---------------
Q 017851 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN--------------- 147 (365)
Q Consensus 83 ~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~--------------- 147 (365)
.++.+|+++|++.|.++|.++++++++|+++|+..|++++|++||.|+++++++..+++||+|++
T Consensus 83 ~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tg 162 (414)
T PTZ00280 83 LMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTG 162 (414)
T ss_pred HHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeE
Confidence 99999999998899999999999999999999999999999999999999999999999999963
Q ss_pred -------CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHh
Q 017851 148 -------GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETA 220 (365)
Q Consensus 148 -------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~ 220 (365)
+.|+|+||++|+++.+++.++++||++++++|.++|++++..+....+.+++++||+++||++.++.++++..
T Consensus 163 lVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~ 242 (414)
T PTZ00280 163 TVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKY 242 (414)
T ss_pred EEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHh
Confidence 4678999999999999999999999999999999999988877665567899999999999999988777654
Q ss_pred ccC-CCcccEEEcCC---C--cEEeeCCcccccccccCCCccCCCC-CCChHHHHHHHHHhCChhHHHhhhcccccccCc
Q 017851 221 KTS-SAVEKSYELPD---G--QVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGS 293 (365)
Q Consensus 221 ~~~-~~~~~~~~lpd---~--~~i~i~~~r~~~~E~LF~p~~~~~~-~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~ 293 (365)
... ......|.+|| | ..|.++.+||.+||+||+|+.++.+ ..+|+++|.++|++||+|+|+.|++||+|+||+
T Consensus 243 ~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~ 322 (414)
T PTZ00280 243 DSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGS 322 (414)
T ss_pred hcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCc
Confidence 322 12345688887 3 3899999999999999999887654 559999999999999999999999999999999
Q ss_pred cCccChHHHHHHHHHhhCC----------------CCceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCc
Q 017851 294 TMFPGIADRMSKEISALAP----------------SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGP 357 (365)
Q Consensus 294 s~i~g~~~RL~~el~~~~~----------------~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~ 357 (365)
|++|||.+||++||+++++ ...+++|..++++.+++|+|||++|++++|+++||||+||+|+|+
T Consensus 323 s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~ 402 (414)
T PTZ00280 323 TMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGP 402 (414)
T ss_pred ccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccCh
Confidence 9999999999999999863 355788888889999999999999999999999999999999999
Q ss_pred cccccc
Q 017851 358 SIVHRK 363 (365)
Q Consensus 358 ~i~~~k 363 (365)
++++|+
T Consensus 403 ~i~~~~ 408 (414)
T PTZ00280 403 SICRYN 408 (414)
T ss_pred Hheeec
Confidence 999887
No 7
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=1.9e-75 Score=494.10 Aligned_cols=359 Identities=49% Similarity=0.903 Sum_probs=332.4
Q ss_pred CCCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCcc--ccCCCccccccchhhhccCcceeeccccCCccCCHH
Q 017851 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM--VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (365)
Q Consensus 5 ~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~ 82 (365)
+..++||+|.||++.|+||||++.|.++||+.+++|.-+... ....-++..+|+++...++.+++.+|+++|.+.|||
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwd 81 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWD 81 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChH
Confidence 347899999999999999999999999999999998754321 122347888999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------Cce
Q 017851 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------GVS 150 (365)
Q Consensus 83 ~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~~t 150 (365)
.++++|+|.|.++|.++|.+.+++++||+++|...||+++|++||.++|.+||+.-++++++|+. |.|
T Consensus 82 dM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT 161 (389)
T KOG0677|consen 82 DMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 161 (389)
T ss_pred HHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999997 789
Q ss_pred EEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEE
Q 017851 151 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 230 (365)
Q Consensus 151 ~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 230 (365)
+|+||++|+++++...+.+++|+++++||.++|..+|+.+...++.+++++||+++||++-|++.+.+...+......+|
T Consensus 162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999998887766666666778899
Q ss_pred EcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhh
Q 017851 231 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISAL 310 (365)
Q Consensus 231 ~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~ 310 (365)
.+|||..|.++.|||.+||+||+|..++.+.+|+.+++.++|+..++|.|..++++|+|+||+++.||+..||++||+++
T Consensus 242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql 321 (389)
T KOG0677|consen 242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL 321 (389)
T ss_pred ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC-----------CCceEEEECCCCCccceeehhhhhhcc-cccccccccHhHHhhcCccccccc
Q 017851 311 AP-----------SSMKIKVVAPPERKYSVWIGGSILASL-STFQQMWIAKSEYDESGPSIVHRK 363 (365)
Q Consensus 311 ~~-----------~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~~~~itr~ey~e~G~~i~~~k 363 (365)
.- ...++++-.||-+...+|+||+++|.+ ..-+++|+||+||+|.|.+.+.+.
T Consensus 322 yl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 322 YLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 41 124688888999999999999999987 566799999999999999988764
No 8
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.3e-74 Score=554.05 Aligned_cols=356 Identities=50% Similarity=0.966 Sum_probs=310.9
Q ss_pred CCCCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCCHHH
Q 017851 4 TEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (365)
Q Consensus 4 ~~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 83 (365)
||+.++||||+||++||+||||++.|+.++|++++++.+... ..++++|++.........+++|+++|.+.||+.
T Consensus 1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 75 (393)
T PF00022_consen 1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDA 75 (393)
T ss_dssp -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHH
T ss_pred CCCCCEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccc
Confidence 689999999999999999999999999999999999876532 226678988666567788999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------CceE
Q 017851 84 MEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------GVSH 151 (365)
Q Consensus 84 ~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~~t~ 151 (365)
++.+|+++|.+.|.+++++++|++++|+++++..|+++++++||.|++++++++++++||+|++ +.|+
T Consensus 76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~ 155 (393)
T PF00022_consen 76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTS 155 (393)
T ss_dssp HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EE
T ss_pred cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeee
Confidence 9999999998889999999999999999999999999999999999999999999999999998 5689
Q ss_pred EEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCC-----------------ccchhHHHHHHHHhhccceeeccHH
Q 017851 152 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS-----------------FTTTAEREIVRDMKEKLAYIALDYE 214 (365)
Q Consensus 152 v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~-----------------~~~~~~~~~~~~ik~~~~~v~~~~~ 214 (365)
|+||+||+++.++++++++||++++++|+++|++++.. +....+..+++++|+++|+++.+..
T Consensus 156 v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 235 (393)
T PF00022_consen 156 VVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPD 235 (393)
T ss_dssp EEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHH
T ss_pred eeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccc
Confidence 99999999999999999999999999999999987433 2233457889999999999998876
Q ss_pred HHHHHhccCCCcccEEEcCCCcEEeeCCcccccccccCCCccCCCCCC-------ChHHHHHHHHHhCChhHHHhhhccc
Q 017851 215 QELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESA-------GIHETTYNSIMKCDVDIRKDLYGNI 287 (365)
Q Consensus 215 ~~~~~~~~~~~~~~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~-------~l~~~I~~~i~~~~~d~r~~l~~nI 287 (365)
. .+...........|.+|||+.+.++.+|+.+||+||+|+..+.+.. +|+++|.++|++||+|+|+.|++||
T Consensus 236 ~-~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nI 314 (393)
T PF00022_consen 236 E-EQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNI 314 (393)
T ss_dssp H-HHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTE
T ss_pred c-ccccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccce
Confidence 4 1111112445778999999999999999999999999998887766 9999999999999999999999999
Q ss_pred ccccCccCccChHHHHHHHHHhhCCCCceEEEECCC-CCccceeehhhhhhcccccccccccHhHHhhcCccccccccC
Q 017851 288 VLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 365 (365)
Q Consensus 288 vl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~-~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k~~ 365 (365)
+||||+|++|||.+||++||+.+.|...+++|..++ +|.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 315 vl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 315 VLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp EEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred EEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 999999999999999999999999988899999998 999999999999999999999999999999999999999997
No 9
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=8.4e-73 Score=537.55 Aligned_cols=357 Identities=67% Similarity=1.175 Sum_probs=327.1
Q ss_pred CcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCCHHHHHHH
Q 017851 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI 87 (365)
Q Consensus 8 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~ 87 (365)
++||||+||+++|+||+|++.|++++||+++++++.....+ +...+++|+++...++...+++|+++|.|.||++++.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence 58999999999999999999999999999999875432111 23467899998777776789999999999999999999
Q ss_pred HHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------CceEEEEe
Q 017851 88 WHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------GVSHTVPI 155 (365)
Q Consensus 88 l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~~t~v~pV 155 (365)
|+++|.+.|++++++++|++++|.++++..|+.+++++||.++++++++++++++++|++ +.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 160 (373)
T smart00268 81 WDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPV 160 (373)
T ss_pred HHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEE
Confidence 999998789999999999999999999999999999999999999999999999999987 57899999
Q ss_pred eCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhcc---CCCcccEEEc
Q 017851 156 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKT---SSAVEKSYEL 232 (365)
Q Consensus 156 ~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~~l 232 (365)
++|+++.++++++++||++++++|.++|++++..+....+.++++++|+++||++.+++++++.... .......|.+
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (373)
T smart00268 161 VDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL 240 (373)
T ss_pred ECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC
Confidence 9999999999999999999999999999886665555566789999999999999988777665432 2345678999
Q ss_pred CCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCC
Q 017851 233 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAP 312 (365)
Q Consensus 233 pd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~ 312 (365)
|||+.+.++.+|+.+||.||+|+.++.+..+|+++|.++|++||+|+|+.|++||+||||+|++|||.+||++||+++.|
T Consensus 241 pdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p 320 (373)
T smart00268 241 PDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAP 320 (373)
T ss_pred CCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCccccccccC
Q 017851 313 SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 365 (365)
Q Consensus 313 ~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k~~ 365 (365)
...++++..+++|.+++|.|||++|++++|+++||||+||+|+|+++++||||
T Consensus 321 ~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 321 KKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred CCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 88889999889999999999999999999999999999999999999999997
No 10
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=1.3e-72 Score=500.98 Aligned_cols=358 Identities=40% Similarity=0.746 Sum_probs=306.1
Q ss_pred CCCCCCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhh-ccCcceeeccccCCccCC
Q 017851 2 ADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSN 80 (365)
Q Consensus 2 ~~~~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~p~~~g~i~~ 80 (365)
.-+|+.++||||+||+++|+||||++.|.+++||.++.....+. ...+...++++.++.. .+...++..|+++|.|.|
T Consensus 6 yggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~-d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~d 84 (426)
T KOG0679|consen 6 YGGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDG-DAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVED 84 (426)
T ss_pred ccccccceEEEeCCCceEeccccCCCCccccccceeeeeecccC-ccccccceEeechhccCCCCCCeeccchhcCCccc
Confidence 35899999999999999999999999999999999985321110 1113344678877644 467899999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------C
Q 017851 81 WDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------G 148 (365)
Q Consensus 81 ~~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~ 148 (365)
||.++.+|+|.|.++|.++|.++|++++||+++++..|++++|++||.|+||++++++.++|++|++ +
T Consensus 85 WD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~ 164 (426)
T KOG0679|consen 85 WDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGAT 164 (426)
T ss_pred HHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCC
Confidence 9999999999998899999999999999999999999999999999999999999999999999998 4
Q ss_pred ceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchh---------------------------------H
Q 017851 149 VSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTA---------------------------------E 195 (365)
Q Consensus 149 ~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~---------------------------------~ 195 (365)
.|+|+||+||+++.++++++++||+.|+..+++.|...+..+.... .
T Consensus 165 ~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~ 244 (426)
T KOG0679|consen 165 HTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYME 244 (426)
T ss_pred CceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHH
Confidence 6789999999999999999999999999999999998766442110 0
Q ss_pred HHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEcCCCcEEeeCCcccccccccCCCccCC------------CCCCC
Q 017851 196 REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIG------------MESAG 263 (365)
Q Consensus 196 ~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~------------~~~~~ 263 (365)
..++++.|+.++-++....++. ....-..++|++|||++.+.+.+||++||.||+|+... ....|
T Consensus 245 ~~v~~e~ke~v~qv~dtp~de~---~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG 321 (426)
T KOG0679|consen 245 QRVYQEFKESVLQVSDTPFDEE---VAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLG 321 (426)
T ss_pred HHHHHHHHHHHHhccCCCCccc---ccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccC
Confidence 1244555555555542211110 01123578999999999999999999999999998641 34679
Q ss_pred hHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECC---CCCccceeehhhhhhccc
Q 017851 264 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP---PERKYSVWIGGSILASLS 340 (365)
Q Consensus 264 l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~---~~~~~~~w~Gasi~a~l~ 340 (365)
+++++..+|..||+|+|..|+.|||||||+|.|+||.+||.+||..+.|.. +++++.. .+|.+++|+||||+|+|+
T Consensus 322 ~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLg 400 (426)
T KOG0679|consen 322 LPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLG 400 (426)
T ss_pred chHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccc
Confidence 999999999999999999999999999999999999999999999999987 9999865 489999999999999999
Q ss_pred ccccccccHhHHhhcCc-ccccccc
Q 017851 341 TFQQMWIAKSEYDESGP-SIVHRKC 364 (365)
Q Consensus 341 ~~~~~~itr~ey~e~G~-~i~~~k~ 364 (365)
+|+++||+|+||+|+|. +.+.|||
T Consensus 401 tFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 401 TFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred cHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 99999999999999999 8999998
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=6e-70 Score=517.42 Aligned_cols=355 Identities=69% Similarity=1.195 Sum_probs=323.3
Q ss_pred cEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCc-ceeeccccCCccCCHHHHHHH
Q 017851 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKI 87 (365)
Q Consensus 9 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~p~~~g~i~~~~~~~~~ 87 (365)
+||||+||+++|+||+|++.|+.++||++++++.+....+.+...+++|+++...... ..+++|+++|++.||+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 6999999999999999999999999999999876543333445678999998777654 789999999999999999999
Q ss_pred HHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------CceEEEEe
Q 017851 88 WHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------GVSHTVPI 155 (365)
Q Consensus 88 l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~~t~v~pV 155 (365)
|+++|.+.|..++++++|++++|+++++..|+++++++||.+++++|++++++++++|++ +.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 999998888888999999999999999999999999999999999999999999999987 57899999
Q ss_pred eCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHh-ccCCCcccEEEcCC
Q 017851 156 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETA-KTSSAVEKSYELPD 234 (365)
Q Consensus 156 ~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~-~~~~~~~~~~~lpd 234 (365)
+||+++.+++.++++||+++++++.++|++++..+....+..+++++|+++||++.+++++.+.. .........|.+||
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd 240 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD 240 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC
Confidence 99999999999999999999999999999888766666677899999999999998887665322 22234567899999
Q ss_pred CcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCC-
Q 017851 235 GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPS- 313 (365)
Q Consensus 235 ~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~- 313 (365)
++.+.++.+||.+||+||+|+.++....+|+++|.++|++||+|.|+.+++||+||||+|++|||.+||++||..+.|.
T Consensus 241 ~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~ 320 (371)
T cd00012 241 GRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS 320 (371)
T ss_pred CeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc
Confidence 9999999999999999999998888899999999999999999999999999999999999999999999999999987
Q ss_pred -CceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCccccccc
Q 017851 314 -SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRK 363 (365)
Q Consensus 314 -~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k 363 (365)
...+++...++|.+++|+|||++|++++|+++||||+||+|+|+++++||
T Consensus 321 ~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 321 KDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred cceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 55677788889999999999999999999999999999999999999987
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.1e-67 Score=500.71 Aligned_cols=362 Identities=54% Similarity=0.990 Sum_probs=326.3
Q ss_pred CCCCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeC-CCCccccCCCccccccchhhhccC--cceeeccccCCccCC
Q 017851 4 TEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVSN 80 (365)
Q Consensus 4 ~~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~p~~~g~i~~ 80 (365)
++..++||||+||+++|+||+|++.|++++|+++++.+ +...+......+.++|+++...++ ..++++|+++|.|.|
T Consensus 3 ~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~ 82 (444)
T COG5277 3 GDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILN 82 (444)
T ss_pred CCCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCC
Confidence 45556699999999999999999999999999999886 334444455778899999988876 688999999999999
Q ss_pred HHHHHHHHHHhccc--ccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------
Q 017851 81 WDDMEKIWHHTFYN--ELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN----------- 147 (365)
Q Consensus 81 ~~~~~~~l~~~~~~--~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~----------- 147 (365)
|++++++|+++|++ .+..++.++|++++||+++++..|+++++++||.++|+++++.++++|++|+.
T Consensus 83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD 162 (444)
T COG5277 83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVID 162 (444)
T ss_pred cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEE
Confidence 99999999999988 68888999999999999999999999999999999999999999999999987
Q ss_pred ---CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHh-----cCCCccch---hHHHHHHHHhhccc-------ee
Q 017851 148 ---GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTT---AEREIVRDMKEKLA-------YI 209 (365)
Q Consensus 148 ---~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~-----~~~~~~~~---~~~~~~~~ik~~~~-------~v 209 (365)
+.|+|+||+||.++.++++++++||++++.+|.++|.. +++.+... .+.++++.+|++.| |+
T Consensus 163 ~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~ 242 (444)
T COG5277 163 SGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYV 242 (444)
T ss_pred cCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccch
Confidence 56899999999999999999999999999999999999 66666654 55889999999999 88
Q ss_pred eccHHHHHHHhcc----------------CCCcccEEEcCCCcEEeeCCc-ccccccccCCCc--cCCCCCCC-------
Q 017851 210 ALDYEQELETAKT----------------SSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPS--MIGMESAG------- 263 (365)
Q Consensus 210 ~~~~~~~~~~~~~----------------~~~~~~~~~lpd~~~i~i~~~-r~~~~E~LF~p~--~~~~~~~~------- 263 (365)
..+.++..+.... .......+..|++..|.++.+ ||.+||.||+|. ..+.+..+
T Consensus 243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~ 322 (444)
T COG5277 243 SLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQ 322 (444)
T ss_pred hhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhh
Confidence 7776655443322 122456789999999999998 999999999999 66555555
Q ss_pred --------------------hHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCC
Q 017851 264 --------------------IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP 323 (365)
Q Consensus 264 --------------------l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~ 323 (365)
|++++.++|..||.+.|+.|++||+||||+|++|||.+||++||+.+.|....+.|..++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~ 402 (444)
T COG5277 323 ELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPP 402 (444)
T ss_pred hhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCC
Confidence 999999999999999999999999999999999999999999999999998999999999
Q ss_pred CCccceeehhhhhhcccccccccccHhHHhhcCccccccccC
Q 017851 324 ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 365 (365)
Q Consensus 324 ~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k~~ 365 (365)
+|.+.+|+|||++|+++.|..+||||+||+|+|++++++|||
T Consensus 403 ~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 403 DPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred chhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999999999999999999999986
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=9.4e-68 Score=459.33 Aligned_cols=350 Identities=30% Similarity=0.580 Sum_probs=319.6
Q ss_pred CCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCc--ceeeccccCCccCCHHH
Q 017851 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDD 83 (365)
Q Consensus 6 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~p~~~g~i~~~~~ 83 (365)
+..+||||+|++++|+|+++++.|. ++|+|+.+.+.. .+..++|++..+.++. +..++|+++|.+.+|+.
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~-------~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~t 73 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFG-------RRRSFLANEIDECKDISSLFYRRPHERGYLVNWDT 73 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCce-eccchhhhcccc-------cchhhhhhhhhhccCccceEEeehhhcceeEeehh
Confidence 4678999999999999999999998 679999886653 4457899998888754 66799999999999999
Q ss_pred HHHHHHHhcccc-cccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC---------------
Q 017851 84 MEKIWHHTFYNE-LRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN--------------- 147 (365)
Q Consensus 84 ~~~~l~~~~~~~-L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~--------------- 147 (365)
..++|+++|.+. +.++..++.+++++|.++-++..+...|++||++++.+++=...+.++++..
T Consensus 74 q~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c 153 (400)
T KOG0680|consen 74 QSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSEC 153 (400)
T ss_pred HHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccce
Confidence 999999999653 4567789999999999999999999999999999999999998888888762
Q ss_pred --------CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHH
Q 017851 148 --------GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET 219 (365)
Q Consensus 148 --------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~ 219 (365)
+.|+|+|+++|.+..++++++++||+.++++|++.+..+.+++.. +..++++|||.+|||++|+.++++.
T Consensus 154 ~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVSqnF~~~m~~ 231 (400)
T KOG0680|consen 154 CLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD--ETYVVNEIKEDVCFVSQNFKEDMDI 231 (400)
T ss_pred EEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc--hhhhhhhhhhheEEechhhHHHHHH
Confidence 579999999999999999999999999999999999999888765 6789999999999999999999987
Q ss_pred hccCC---CcccEEEcCC-------------------CcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCCh
Q 017851 220 AKTSS---AVEKSYELPD-------------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDV 277 (365)
Q Consensus 220 ~~~~~---~~~~~~~lpd-------------------~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~ 277 (365)
+.... .....|.||| .+.|.+++|||.+||+||+|++++.+++||+++|.++|+.||.
T Consensus 232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe 311 (400)
T KOG0680|consen 232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE 311 (400)
T ss_pred HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence 75543 2456788876 4678899999999999999999999999999999999999999
Q ss_pred hHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCc
Q 017851 278 DIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGP 357 (365)
Q Consensus 278 d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~ 357 (365)
++|+.|+.||+++||+++.|||.+||..||+.++|.++.++|..+.||..-+|.||+-++.+++|...||||+||+|||+
T Consensus 312 ~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~ 391 (400)
T KOG0680|consen 312 EVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGP 391 (400)
T ss_pred HHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 017851 358 SIVHRKCF 365 (365)
Q Consensus 358 ~i~~~k~~ 365 (365)
+++.+|.|
T Consensus 392 ~~~~~~~~ 399 (400)
T KOG0680|consen 392 SWCTKKRF 399 (400)
T ss_pred hhhhhhcc
Confidence 99999865
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=2.3e-55 Score=404.97 Aligned_cols=352 Identities=28% Similarity=0.567 Sum_probs=303.4
Q ss_pred CCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCc-ceeeccccCCccCCHHHHH
Q 017851 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDME 85 (365)
Q Consensus 7 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~p~~~g~i~~~~~~~ 85 (365)
..|||||+||+.+|+||+|+..|+.+|++++.+|+++... ..-.+||++..+.... ...+.||.+.+|+||+.+|
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~----~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E 98 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLG----ASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELME 98 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhccccccccc----cccccccchhhhhhhhhccCCCCCcCCccccHHHHH
Confidence 5689999999999999999999999999999999866432 1223688876554322 3468999999999999999
Q ss_pred HHHHHhcccccccCCC--CCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC----------------
Q 017851 86 KIWHHTFYNELRVAPE--EHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN---------------- 147 (365)
Q Consensus 86 ~~l~~~~~~~L~~~~~--~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~---------------- 147 (365)
++++++| .+|+++++ +||+++||+..+|...|..+.++|||.+|+|+|.+.-+++.|+|..
T Consensus 99 ~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~ 177 (645)
T KOG0681|consen 99 QILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGH 177 (645)
T ss_pred HHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCC
Confidence 9999999 89999885 6999999999999999999999999999999999999999999943
Q ss_pred CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccC----
Q 017851 148 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS---- 223 (365)
Q Consensus 148 ~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~---- 223 (365)
.+|+|+||.||..+...++++++||+++..||.++|+.+++-+.....+...+.++..+||+++||.+++.++...
T Consensus 178 ~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d 257 (645)
T KOG0681|consen 178 SATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYD 257 (645)
T ss_pred CcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhh
Confidence 5799999999999999999999999999999999999887766555567788889999999988876553321100
Q ss_pred ---------------------------------------------C----------------------Ccc--cEEE---
Q 017851 224 ---------------------------------------------S----------------------AVE--KSYE--- 231 (365)
Q Consensus 224 ---------------------------------------------~----------------------~~~--~~~~--- 231 (365)
. ..+ ..|.
T Consensus 258 ~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll~ 337 (645)
T KOG0681|consen 258 ENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLLN 337 (645)
T ss_pred ccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhhc
Confidence 0 000 0000
Q ss_pred cCC-----------------------------------------------------------------------------
Q 017851 232 LPD----------------------------------------------------------------------------- 234 (365)
Q Consensus 232 lpd----------------------------------------------------------------------------- 234 (365)
+|+
T Consensus 338 v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r 417 (645)
T KOG0681|consen 338 VPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKDR 417 (645)
T ss_pred chhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 000
Q ss_pred --------------------------------------------------------------------------------
Q 017851 235 -------------------------------------------------------------------------------- 234 (365)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (365)
T Consensus 418 ~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d 497 (645)
T KOG0681|consen 418 KSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTD 497 (645)
T ss_pred hhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccC
Confidence
Q ss_pred ------------CcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHH
Q 017851 235 ------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 302 (365)
Q Consensus 235 ------------~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~R 302 (365)
..++.++.+|+.+||++|+|+++|.|++||.+++..++++.|.|.+..|.+||++|||+|++||+.+|
T Consensus 498 ~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeR 577 (645)
T KOG0681|consen 498 PRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKER 577 (645)
T ss_pred cccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHH
Confidence 12455788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCccccccc
Q 017851 303 MSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRK 363 (365)
Q Consensus 303 L~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k 363 (365)
|.+||+...|..+++.|+...+|...+|.||+.+|...+|..-++||+||+|+|+..++.-
T Consensus 578 i~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh 638 (645)
T KOG0681|consen 578 IKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEH 638 (645)
T ss_pred HHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887654
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=1.1e-54 Score=378.24 Aligned_cols=356 Identities=38% Similarity=0.670 Sum_probs=303.7
Q ss_pred CCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCcc--------ccCCCccccccchhhhccCcceeeccccCCcc
Q 017851 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM--------VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV 78 (365)
Q Consensus 7 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i 78 (365)
+.++|+|+|+.++|.||+|+..|.+++|++++......++ .+....++++|+++.. ...+.+.+|+++|.+
T Consensus 4 ~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~v 82 (415)
T KOG0678|consen 4 NLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQV 82 (415)
T ss_pred CCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceecccc
Confidence 3459999999999999999999999999999754322111 1233567889999988 567889999999999
Q ss_pred CCHHHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------
Q 017851 79 SNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN----------- 147 (365)
Q Consensus 79 ~~~~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~----------- 147 (365)
.|||.++++|.+.+.++|...|++|-.+++||++++++.|+..++++||.++|+.+|+..++++|+-++
T Consensus 83 e~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~l 162 (415)
T KOG0678|consen 83 EDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFL 162 (415)
T ss_pred ccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred ---------CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHH
Q 017851 148 ---------GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELE 218 (365)
Q Consensus 148 ---------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~ 218 (365)
|.|+|+||.+||++-++++..|++|++++-.++++|++++...+.....+..+.||+++||+++|.-.+..
T Consensus 163 tG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~ 242 (415)
T KOG0678|consen 163 TGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFA 242 (415)
T ss_pred eeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHH
Confidence 78999999999999999999999999999999999998888776656678899999999999998876665
Q ss_pred HhccCCCc-ccEE---EcCC--CcEEeeCCcccccccccCCCccCC-CCCCChHHHHHHHHHhCChhHHHhhhccccccc
Q 017851 219 TAKTSSAV-EKSY---ELPD--GQVITIGAERFRCPEVLFQPSMIG-MESAGIHETTYNSIMKCDVDIRKDLYGNIVLSG 291 (365)
Q Consensus 219 ~~~~~~~~-~~~~---~lpd--~~~i~i~~~r~~~~E~LF~p~~~~-~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~G 291 (365)
++...+.. .+.| ..-. ...++++.+||..||++|+|.+-. .-...|++.+-..|++||+|.|+.||+||++.|
T Consensus 243 k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsg 322 (415)
T KOG0678|consen 243 KYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSG 322 (415)
T ss_pred HhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhcc
Confidence 54322110 1111 1112 235677899999999999998754 446679999999999999999999999999999
Q ss_pred CccCccChHHHHHHHHHhhC--------------CCCceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCc
Q 017851 292 GSTMFPGIADRMSKEISALA--------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGP 357 (365)
Q Consensus 292 G~s~i~g~~~RL~~el~~~~--------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~ 357 (365)
|.++.++|..|++.+++.+. +....++++......+++|-|||++++.+.|...+=||++|+|+|+
T Consensus 323 gst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~ 402 (415)
T KOG0678|consen 323 GSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGP 402 (415)
T ss_pred chHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhCh
Confidence 99999999999999987653 1223467777777889999999999999999999999999999999
Q ss_pred cccccc
Q 017851 358 SIVHRK 363 (365)
Q Consensus 358 ~i~~~k 363 (365)
+|++..
T Consensus 403 si~r~~ 408 (415)
T KOG0678|consen 403 SICRTN 408 (415)
T ss_pred hhhhcC
Confidence 999753
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-35 Score=271.19 Aligned_cols=293 Identities=20% Similarity=0.418 Sum_probs=229.4
Q ss_pred cceeeccccCCccCC----------HHHHHHHHHHhcccccccCCC---CCceEEecCCCCCHHhHHHHHHHhhccCCCC
Q 017851 66 ILTLKYPIEHGIVSN----------WDDMEKIWHHTFYNELRVAPE---EHPILLTEAPLNPKANREKMTQIMFETFNAP 132 (365)
Q Consensus 66 ~~~~~~p~~~g~i~~----------~~~~~~~l~~~~~~~L~~~~~---~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~ 132 (365)
.+.+.+||++|..+- .+.+.++|+|++.+.|++.++ .+.+|++.|....+.+-+.+..++|-+|+|.
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~ 257 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN 257 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence 477899999997653 367889999999889999875 5788888888888888888999999999999
Q ss_pred ceecccchhhhhhcC------------CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCcc-----chhH
Q 017851 133 AMYVAIQAVLSLYAN------------GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFT-----TTAE 195 (365)
Q Consensus 133 ~v~~~~~~~~a~~~~------------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~-----~~~~ 195 (365)
++.++.+++|++||+ ..|+|+||.||.+++++...+++||.++++-+.++|++.+.++. ...+
T Consensus 258 ~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d 337 (618)
T KOG0797|consen 258 SAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPID 337 (618)
T ss_pred eEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCccccccccccc
Confidence 999999999999998 35889999999999999999999999999999999998877653 4567
Q ss_pred HHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEcCCC----cEEeeCCcccccccccCCCccCC-------------
Q 017851 196 REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDG----QVITIGAERFRCPEVLFQPSMIG------------- 258 (365)
Q Consensus 196 ~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~----~~i~i~~~r~~~~E~LF~p~~~~------------- 258 (365)
+.+++++|++.|.+..... ..+.... .+.-||+ +++.+++|...+|-.||.|.++.
T Consensus 338 ~lLl~~LKe~Fc~l~~a~~-~vQ~~~F------~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~ 410 (618)
T KOG0797|consen 338 WLLLNQLKEKFCHLRAAEL-GVQLTVF------SYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFP 410 (618)
T ss_pred HHHHHHHHHHhccccHhhh-hhhhhhh------hccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccC
Confidence 8999999999998854321 1111100 0111111 12233344444444444443210
Q ss_pred --------------------------------------------------------------------------------
Q 017851 259 -------------------------------------------------------------------------------- 258 (365)
Q Consensus 259 -------------------------------------------------------------------------------- 258 (365)
T Consensus 411 q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~ 490 (618)
T KOG0797|consen 411 QPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIM 490 (618)
T ss_pred CCCcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhh
Confidence
Q ss_pred ------CC----CCChHHHHHHHHHhC-ChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCC----ceEEEECCC
Q 017851 259 ------ME----SAGIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS----MKIKVVAPP 323 (365)
Q Consensus 259 ------~~----~~~l~~~I~~~i~~~-~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~----~~v~v~~~~ 323 (365)
.. ...+.++|..+|..+ ..|.++.|++.|.++||..+.||+.+-|++.+....|+. ..|.|+.++
T Consensus 491 n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~p 570 (618)
T KOG0797|consen 491 NKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPP 570 (618)
T ss_pred cccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCC
Confidence 00 113445677888776 478899999999999999999999999999998877763 247777655
Q ss_pred ---CCccceeehhhhhhcccccccccccHhHHhhcCccccccccC
Q 017851 324 ---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 365 (365)
Q Consensus 324 ---~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k~~ 365 (365)
||++-+|+||+|+|.+..-.++||++.||.-+|.++++.||+
T Consensus 571 rdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 571 RDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred cCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 899999999999999988899999999999999999999984
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=7.2e-33 Score=259.79 Aligned_cols=295 Identities=18% Similarity=0.230 Sum_probs=225.2
Q ss_pred EEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhcc----CcceeeccccCCccCCHHHHH
Q 017851 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDME 85 (365)
Q Consensus 10 vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~p~~~g~i~~~~~~~ 85 (365)
|+||+||+++|+|++|++ +....||+++..... .+.+++|+++.... ....+.+|+++|.|.||+.++
T Consensus 11 vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e 82 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATE 82 (335)
T ss_pred eEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHH
Confidence 999999999999998775 455679999876421 23568999987653 447789999999999999999
Q ss_pred HHHHHhcccccccCC-CCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------------
Q 017851 86 KIWHHTFYNELRVAP-EEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN----------------- 147 (365)
Q Consensus 86 ~~l~~~~~~~L~~~~-~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~----------------- 147 (365)
++|++++.+.+...+ ...+++++.|..++...|+.+.+ +||.++++.++++++|++|+|++
T Consensus 83 ~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~ 161 (335)
T PRK13930 83 AMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGG 161 (335)
T ss_pred HHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCC
Confidence 999999944444323 36789999999888887776666 79999999999999999999875
Q ss_pred CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcc
Q 017851 148 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVE 227 (365)
Q Consensus 148 ~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 227 (365)
|.|+++||.+|.++. ....++||.++++.|.+++.++. .+. ...+.++.+|+++|++..+.+.. .... ....
T Consensus 162 gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~~-~~~--~~~~~ae~~K~~~~~~~~~~~~~--~~~~-~~~~ 233 (335)
T PRK13930 162 GTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRKY-NLL--IGERTAEEIKIEIGSAYPLDEEE--SMEV-RGRD 233 (335)
T ss_pred CeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHhhcCcCCCCCc--eEEE-ECcc
Confidence 568899999998874 45689999999999999987652 221 12467899999999986553211 0000 0001
Q ss_pred cEEEcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcc-cccccCccCccChHHHHHHH
Q 017851 228 KSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSKE 306 (365)
Q Consensus 228 ~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~g~~~RL~~e 306 (365)
..+.+|+ .+.++.+++ .|++|.| ..++.+.|.++|++|+.+.+..+++| |+||||+|++|||.+||+++
T Consensus 234 ~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~ 303 (335)
T PRK13930 234 LVTGLPK--TIEISSEEV--REALAEP------LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEE 303 (335)
T ss_pred CCCCCCe--eEEECHHHH--HHHHHHH------HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHH
Confidence 1122332 445555555 3788876 34689999999999999999999998 99999999999999999999
Q ss_pred HHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 307 ISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 307 l~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
+. +++....+|..++-.||++++.-
T Consensus 304 ~~--------~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 304 TG--------LPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HC--------CCceecCCHHHHHHHHHHHHHhC
Confidence 84 23334456788888999998743
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.9e-32 Score=255.48 Aligned_cols=294 Identities=18% Similarity=0.228 Sum_probs=222.3
Q ss_pred cEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhcc----CcceeeccccCCccCCHHHH
Q 017851 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDM 84 (365)
Q Consensus 9 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~p~~~g~i~~~~~~ 84 (365)
.|+||+||+++|+|++|++. ...+||+++.++.. .+.+++|+++.... ....+.+|+++|.|.||+.+
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~ 78 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVT 78 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHH
Confidence 49999999999999999876 56789999987642 23468999997763 55778999999999999999
Q ss_pred HHHHHHhcccccccCCCCC-ceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC----------------
Q 017851 85 EKIWHHTFYNELRVAPEEH-PILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN---------------- 147 (365)
Q Consensus 85 ~~~l~~~~~~~L~~~~~~~-~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~---------------- 147 (365)
+++|++++.+.+.. +.++ .++++.| .+++..++++++.+|+.++++.++++++|++|+|++
T Consensus 79 ~~ll~~~~~~~~~~-~~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiG 156 (334)
T PRK13927 79 EKMLKYFIKKVHKN-FRPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIG 156 (334)
T ss_pred HHHHHHHHHHHhhc-cCCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeC
Confidence 99999999776666 5555 4555555 566777778899999999999999999999999875
Q ss_pred -CceEEEEe-eCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCC
Q 017851 148 -GVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSA 225 (365)
Q Consensus 148 -~~t~v~pV-~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 225 (365)
|.|+++|+ .+|++..+. .++||+++++.|.+++.++. .+. .+.+.++++|+++|++..+.+.. .... ..
T Consensus 157 ggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~-~~~--~~~~~ae~iK~~~~~~~~~~~~~--~~~~-~~ 227 (334)
T PRK13927 157 GGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNY-NLL--IGERTAERIKIEIGSAYPGDEVL--EMEV-RG 227 (334)
T ss_pred CCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHh-CcC--cCHHHHHHHHHHhhccCCCCCCc--eEEE-eC
Confidence 56788998 777776554 48999999999999987432 111 13467999999999885432100 0000 00
Q ss_pred cccEEEcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcc-cccccCccCccChHHHHH
Q 017851 226 VEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMS 304 (365)
Q Consensus 226 ~~~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~g~~~RL~ 304 (365)
....+.+|+ .+.++.++|. |++|.| ..++.+.|.++|++++.++++.++++ |+||||+|++|||.+||+
T Consensus 228 ~~~~~~~~~--~~~i~~~~~~--e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~ 297 (334)
T PRK13927 228 RDLVTGLPK--TITISSNEIR--EALQEP------LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLS 297 (334)
T ss_pred cccCCCCCe--EEEECHHHHH--HHHHHH------HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHH
Confidence 000122222 4556666653 788876 34789999999999999999899975 999999999999999999
Q ss_pred HHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 305 KEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 305 ~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
+++. +++....+|..++-.||++++.-
T Consensus 298 ~~~~--------~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 298 EETG--------LPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHC--------CCcEecCCHHHHHHHHHHHHHhh
Confidence 9983 23344456788899999988643
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.97 E-value=4.2e-30 Score=240.49 Aligned_cols=298 Identities=16% Similarity=0.198 Sum_probs=222.0
Q ss_pred EEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhc----cCcceeeccccCCccCCHHHHH
Q 017851 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDME 85 (365)
Q Consensus 10 vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~~~~~ 85 (365)
|=||+||.++++-..++. -....||+++..+++. +...+-+++|+++... .....+.+|+++|.|.||+.++
T Consensus 5 ~giDlGt~~s~i~~~~~~-~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG-IVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eEEecCcceEEEEECCCC-EEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 889999999998654332 2345688887654321 0112346799998876 2567889999999999999999
Q ss_pred HHHHHhcccccccCCCC-CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------------
Q 017851 86 KIWHHTFYNELRVAPEE-HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN----------------- 147 (365)
Q Consensus 86 ~~l~~~~~~~L~~~~~~-~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~----------------- 147 (365)
++|++++.+.+...... .+++++.|..++...|+. ++.+|+.++++.++++++|++|+|++
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 99999997655432222 279999999999888876 66689999999999999999999875
Q ss_pred CceEEEEe-eCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCc
Q 017851 148 GVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAV 226 (365)
Q Consensus 148 ~~t~v~pV-~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 226 (365)
|.|++++| .+|.+..... ++||+++++.|.+++..+. .. ..+.+.++++|+++|++..+.++... ... ...
T Consensus 160 gttdvs~v~~~~~~~~~~~---~lGG~did~~l~~~l~~~~-~~--~~~~~~ae~lK~~l~~~~~~~~~~~~-~~~-~~~ 231 (333)
T TIGR00904 160 GTTEVAVISLGGIVVSRSI---RVGGDEFDEAIINYIRRTY-NL--LIGEQTAERIKIEIGSAYPLNDEPRK-MEV-RGR 231 (333)
T ss_pred CeEEEEEEEeCCEEecCCc---cchHHHHHHHHHHHHHHHh-cc--cCCHHHHHHHHHHHhccccccccccc-eee-cCc
Confidence 56788999 7887766544 8999999999999887542 11 11346799999999987654221110 000 011
Q ss_pred ccEEEcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhc-ccccccCccCccChHHHHHH
Q 017851 227 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSK 305 (365)
Q Consensus 227 ~~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~g~~~RL~~ 305 (365)
...+.+|++..| +.+ .+.|++|.| ..++.+.|.+++++++.+.+..+++ ||+||||+|++|||.+||++
T Consensus 232 ~~~~~~~~~~~i--~~~--~~~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~ 301 (333)
T TIGR00904 232 DLVTGLPRTIEI--TSV--EVREALQEP------VNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSK 301 (333)
T ss_pred cccCCCCeEEEE--CHH--HHHHHHHHH------HHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHH
Confidence 123455655433 322 567888887 3468999999999999999999997 79999999999999999999
Q ss_pred HHHhhCCCCceEEEECCCCCccceeehhhhhhc
Q 017851 306 EISALAPSSMKIKVVAPPERKYSVWIGGSILAS 338 (365)
Q Consensus 306 el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 338 (365)
++. +++....+|..++-.||++++.
T Consensus 302 ~~~--------~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 302 ETG--------LPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHC--------CCceecCChHHHHHHHHHHHHh
Confidence 983 3445556788999999998864
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.96 E-value=2e-29 Score=235.58 Aligned_cols=290 Identities=18% Similarity=0.318 Sum_probs=218.7
Q ss_pred cEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhcc----CcceeeccccCCccCCHHHH
Q 017851 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDM 84 (365)
Q Consensus 9 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~p~~~g~i~~~~~~ 84 (365)
.|=||+||.++++--.++.. -...||+++...+. .+-+++|++|..+. ....+.+|+++|.|.||+..
T Consensus 6 ~~giDlGt~~~~i~~~~~~~-~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~ 77 (335)
T PRK13929 6 EIGIDLGTANILVYSKNKGI-ILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMT 77 (335)
T ss_pred eEEEEcccccEEEEECCCcE-EecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHH
Confidence 48999999999983223321 12368888764321 12357999998774 55778899999999999999
Q ss_pred HHHHHHhccc---ccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC--------------
Q 017851 85 EKIWHHTFYN---ELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-------------- 147 (365)
Q Consensus 85 ~~~l~~~~~~---~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-------------- 147 (365)
+.+|++++.+ .++.++...+++++.|+..+...|+.+.+ +++..|++.+.++.+|++|++++
T Consensus 78 ~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvD 156 (335)
T PRK13929 78 TDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVD 156 (335)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEE
Confidence 9999999963 56666666799999999999999999988 89999999999999999999876
Q ss_pred ---CceEEEEe-eCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccC
Q 017851 148 ---GVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS 223 (365)
Q Consensus 148 ---~~t~v~pV-~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 223 (365)
|.|+++++ ++|..... ..++||+++++.|.+++... +.+.. +...+|++|+++|++..+++++. ...
T Consensus 157 iG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~l~~~-~~~~~--~~~~AE~iK~~l~~~~~~~~~~~--~~v- 227 (335)
T PRK13929 157 IGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSFVRKK-YNLLI--GERTAEQVKMEIGYALIEHEPET--MEV- 227 (335)
T ss_pred eCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHHHHHH-hCcCc--CHHHHHHHHHHHcCCCCCCCCce--EEE-
Confidence 56788998 66655443 35899999999999998753 22221 34679999999999864432110 000
Q ss_pred CCcccEEEcCCCcEEeeCCcccc--cccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhc-ccccccCccCccChH
Q 017851 224 SAVEKSYELPDGQVITIGAERFR--CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIA 300 (365)
Q Consensus 224 ~~~~~~~~lpd~~~i~i~~~r~~--~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~g~~ 300 (365)
......+.+| ..+.++.+++. ++|.+|+ +.+.|.++|++|+++++..+++ +|+||||+|++|||.
T Consensus 228 ~g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~ 295 (335)
T PRK13929 228 RGRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIK 295 (335)
T ss_pred eCCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHH
Confidence 0001112333 46677767665 4677774 8999999999999999999998 699999999999999
Q ss_pred HHHHHHHHhhCCCCceEEEECCCCCccceeehhhhh
Q 017851 301 DRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSIL 336 (365)
Q Consensus 301 ~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 336 (365)
+||++++. +.+....+|..++-.|+..+
T Consensus 296 e~l~~~~~--------~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 296 EWLSEEIV--------VPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHC--------CCceeCCCHHHHHHHHHHHH
Confidence 99999994 23333557788899997765
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.94 E-value=6.2e-27 Score=214.41 Aligned_cols=292 Identities=18% Similarity=0.248 Sum_probs=209.2
Q ss_pred cEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhc----cCcceeeccccCCccCCHHHH
Q 017851 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDM 84 (365)
Q Consensus 9 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~~~~ 84 (365)
-+=||+||.++++-..++. =....||+++.++.. .+-..+|++|..+ .....+.+|+++|+|.|++..
T Consensus 3 ~igIDLGT~~t~i~~~~~G-iv~~epSvVA~~~~~-------~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~ 74 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG-IVLNEPSVVAYDKDT-------GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAA 74 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE-EEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHH
T ss_pred ceEEecCcccEEEEECCCC-EEEecCcEEEEECCC-------CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHH
Confidence 4779999999999444433 223458888876653 3345689999776 356889999999999999999
Q ss_pred HHHHHHhccccccc-CCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC----------------
Q 017851 85 EKIWHHTFYNELRV-APEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN---------------- 147 (365)
Q Consensus 85 ~~~l~~~~~~~L~~-~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~---------------- 147 (365)
+.++++++.+..+- ......++++.|.-.+...|+.+.+.+. ..|+.+|+++++|++|++|+
T Consensus 75 ~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG 153 (326)
T PF06723_consen 75 EEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIG 153 (326)
T ss_dssp HHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-
T ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEEC
Confidence 99999999665553 2345678899999989899888888875 48999999999999999997
Q ss_pred -CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCc
Q 017851 148 -GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAV 226 (365)
Q Consensus 148 -~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 226 (365)
|.|.+.-+..|-++. ...+++||.++++.+.+++++++.-+ ....++|++|++++++....++. .. .
T Consensus 154 ~GtTdiavislggiv~--s~si~~gG~~~DeaI~~~ir~~y~l~---Ig~~tAE~iK~~~g~~~~~~~~~--~~-----~ 221 (326)
T PF06723_consen 154 GGTTDIAVISLGGIVA--SRSIRIGGDDIDEAIIRYIREKYNLL---IGERTAEKIKIEIGSASPPEEEE--SM-----E 221 (326)
T ss_dssp SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHHHHHHSEE-----HHHHHHHHHHH-BSS--HHHH--EE-----E
T ss_pred CCeEEEEEEECCCEEE--EEEEEecCcchhHHHHHHHHHhhCcc---cCHHHHHHHHHhcceeeccCCCc--eE-----E
Confidence 677888888887764 47789999999999999999766322 24588999999999886442221 10 1
Q ss_pred ccEEEcCCCc--EEeeC-CcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcc-cccccCccCccChHHH
Q 017851 227 EKSYELPDGQ--VITIG-AERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADR 302 (365)
Q Consensus 227 ~~~~~lpd~~--~i~i~-~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~g~~~R 302 (365)
.....+-+|. .+.++ .+-..+.+..+.+ +.+.|.+++.++|+|++.++++| |+||||+|+++||.++
T Consensus 222 v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~---------I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~ 292 (326)
T PF06723_consen 222 VRGRDLITGLPKSIEITSSEVREAIEPPVDQ---------IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEY 292 (326)
T ss_dssp EEEEETTTTCEEEEEEEHHHHHHHHHHHHHH---------HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHH
T ss_pred EECccccCCCcEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHH
Confidence 1222333443 34444 3444555555544 89999999999999999998877 9999999999999999
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccceeehhhhhhc
Q 017851 303 MSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 338 (365)
Q Consensus 303 L~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 338 (365)
|++++ .++|...++|..++-.|+..+..
T Consensus 293 i~~~~--------~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 293 ISEET--------GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence 99999 45777777889999999876653
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.93 E-value=4.5e-25 Score=206.73 Aligned_cols=299 Identities=18% Similarity=0.267 Sum_probs=211.9
Q ss_pred CCCCCCCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhcc----CcceeeccccCC
Q 017851 1 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHG 76 (365)
Q Consensus 1 ~~~~~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~p~~~g 76 (365)
||+.+ +=||+||.++++-..++. -....||+++-..+. +.-..+|+++..+. ......+|+++|
T Consensus 1 ~~~~~----~gIDlGt~~~~i~~~~~~-~v~~~psvv~~~~~~-------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G 68 (336)
T PRK13928 1 MFGRD----IGIDLGTANVLVYVKGKG-IVLNEPSVVAIDKNT-------NKVLAVGEEARRMVGRTPGNIVAIRPLRDG 68 (336)
T ss_pred CCCce----eEEEcccccEEEEECCCC-EEEccCCEEEEECCC-------CeEEEecHHHHHhhhcCCCCEEEEccCCCC
Confidence 56653 899999999999665442 222468888765322 12347899987762 456678999999
Q ss_pred ccCCHHHHHHHHHHhcccccccC-CCCCc-eEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-------
Q 017851 77 IVSNWDDMEKIWHHTFYNELRVA-PEEHP-ILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------- 147 (365)
Q Consensus 77 ~i~~~~~~~~~l~~~~~~~L~~~-~~~~~-vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------- 147 (365)
.|.||+..+++|++++ +++... +..+| ++++.|.. ....+++.++.+++..|++.+.++++|++|++++
T Consensus 69 ~i~d~~~~~~~l~~~~-~~~~~~~~~~~p~~vitvP~~-~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~ 146 (336)
T PRK13928 69 VIADYDVTEKMLKYFI-NKACGKRFFSKPRIMICIPTG-ITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQP 146 (336)
T ss_pred eEecHHHHHHHHHHHH-HHHhccCCCCCCeEEEEeCCC-CCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCC
Confidence 9999999999999998 444333 44666 77777555 5566777888889999999999999999999875
Q ss_pred ----------CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHH
Q 017851 148 ----------GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL 217 (365)
Q Consensus 148 ----------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~ 217 (365)
|.|.+++|..|.++.. ...++||+++++.|.+.+..+. .+. .....++++|++++++..+..+.
T Consensus 147 ~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did~~i~~~l~~~~-~~~--~~~~~ae~lK~~~~~~~~~~~~~- 220 (336)
T PRK13928 147 SGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEAIIRYIRKKY-KLL--IGERTAEEIKIKIGTAFPGAREE- 220 (336)
T ss_pred CeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHHHHHHHHHHh-chh--cCHHHHHHHHHHhcccccccCCc-
Confidence 5678999988866543 4679999999999999987432 211 12356999999988764321100
Q ss_pred HHhccCCCcccEEEcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhc-ccccccCccCc
Q 017851 218 ETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMF 296 (365)
Q Consensus 218 ~~~~~~~~~~~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvl~GG~s~i 296 (365)
.... ......+.+|. .+.++.+++. |+++.+ ...+.+.|.+++.+++.+++..+++ +|+||||+|++
T Consensus 221 -~~~v-~g~~~~~~~~~--~~~i~~~~~~--eii~~~------~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~i 288 (336)
T PRK13928 221 -EMEI-RGRDLVTGLPK--TITVTSEEIR--EALKEP------VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALL 288 (336)
T ss_pred -EEEE-ecccccCCCce--EEEECHHHHH--HHHHHH------HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccch
Confidence 0000 00000111222 2444544443 555554 2358889999999999999989998 79999999999
Q ss_pred cChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 297 PGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 297 ~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
||+.++|++++.. ++....+|..++-.||++++.-
T Consensus 289 pgi~e~l~~~~~~--------~v~~~~~P~~ava~Gaa~~~~~ 323 (336)
T PRK13928 289 HGLDKLLAEETKV--------PVYIAEDPISCVALGTGKMLEN 323 (336)
T ss_pred hhHHHHHHHHHCC--------CceecCCHHHHHHHHHHHHHhc
Confidence 9999999999842 3334456889999999988643
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.82 E-value=6.9e-20 Score=162.27 Aligned_cols=298 Identities=17% Similarity=0.217 Sum_probs=207.3
Q ss_pred CcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhc----cCcceeeccccCCccCCHHH
Q 017851 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDD 83 (365)
Q Consensus 8 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~~~ 83 (365)
+.|=||+||.++++---+.. =-...||+++....+ ....-..+|++|..+ .+.....+|+++|+|.|++.
T Consensus 7 ~diGIDLGTanTlV~~k~kg-IVl~ePSVVAi~~~~-----~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~ 80 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKG-IVLNEPSVVAIESEG-----KTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEV 80 (342)
T ss_pred ccceeeecccceEEEEcCce-EEecCceEEEEeecC-----CCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHHH
Confidence 47899999999998544332 222468888765531 123355799999887 24577899999999999999
Q ss_pred HHHHHHHhcccccccC--CCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC--------------
Q 017851 84 MEKIWHHTFYNELRVA--PEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-------------- 147 (365)
Q Consensus 84 ~~~~l~~~~~~~L~~~--~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-------------- 147 (365)
.+.+++|.+++..+-. +..-.++++.|.-.....|+.+-+.+- +-+...|+++++|.+|++++
T Consensus 81 te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~-~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvD 159 (342)
T COG1077 81 TELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAE-SAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVD 159 (342)
T ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHH-hccCceEEEeccHHHHHhcCCCcccCCCCCEEEE
Confidence 9999999985443222 233457788777777777776655554 57889999999999999998
Q ss_pred ---CceEEEEeeCC-eeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccC
Q 017851 148 ---GVSHTVPIYEG-YALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS 223 (365)
Q Consensus 148 ---~~t~v~pV~~g-~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 223 (365)
|.|.|..+..| ++.. .+..+||+.+++.+..++++++.-+.. ....|+||.+.+++.+....+..+..-
T Consensus 160 IGgGTTevaVISlggiv~~---~Sirv~GD~~De~Ii~yvr~~~nl~IG---e~taE~iK~eiG~a~~~~~~~~~~~eV- 232 (342)
T COG1077 160 IGGGTTEVAVISLGGIVSS---SSVRVGGDKMDEAIIVYVRKKYNLLIG---ERTAEKIKIEIGSAYPEEEDEELEMEV- 232 (342)
T ss_pred eCCCceeEEEEEecCEEEE---eeEEEecchhhHHHHHHHHHHhCeeec---HHHHHHHHHHhcccccccCCccceeeE-
Confidence 56777666444 4443 455899999999999999876544333 467999999999987542211000000
Q ss_pred CCcccEEEcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcc-cccccCccCccChHHH
Q 017851 224 SAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADR 302 (365)
Q Consensus 224 ~~~~~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~g~~~R 302 (365)
...+..-.+| .++.++.+ .+.|.|-.| ...|.++|..++.+||+|+-...+++ |++|||+|.+.||.+.
T Consensus 233 ~Grdl~~GlP--k~i~i~s~--ev~eal~~~------v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~ 302 (342)
T COG1077 233 RGRDLVTGLP--KTITINSE--EIAEALEEP------LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRL 302 (342)
T ss_pred EeeecccCCC--eeEEEcHH--HHHHHHHHH------HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHh
Confidence 0000111122 22333222 112223222 23588999999999999999999999 9999999999999999
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccceeehhhhhh
Q 017851 303 MSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 337 (365)
Q Consensus 303 L~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 337 (365)
|.+|. .+.|.-.++|-..+-+|+....
T Consensus 303 i~~et--------~~pv~ia~~pL~~Va~G~G~~l 329 (342)
T COG1077 303 LSEET--------GVPVIIADDPLTCVAKGTGKAL 329 (342)
T ss_pred HHhcc--------CCeEEECCChHHHHHhccchhh
Confidence 99887 5677777778888888866544
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.53 E-value=2.3e-13 Score=120.99 Aligned_cols=198 Identities=15% Similarity=0.152 Sum_probs=137.9
Q ss_pred eccccCCccCCHHHHHHHHHHhcccc-cccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-
Q 017851 70 KYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN- 147 (365)
Q Consensus 70 ~~p~~~g~i~~~~~~~~~l~~~~~~~-L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~- 147 (365)
..|+.+|.|.|++..+.+++++.... -.....-..++++-|.......|+.+. -.++..|+.-+.++.+|++++.++
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~-~a~~~aGl~~~~li~ep~Aaa~~~~ 106 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIV-NVIESAGIEVLHVLDEPTAAAAVLQ 106 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHH-HHHHHcCCceEEEeehHHHHHHHhc
Confidence 47899999999999999999997421 111223468888889887777776555 455557999999999999887654
Q ss_pred -----------CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHH
Q 017851 148 -----------GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQE 216 (365)
Q Consensus 148 -----------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~ 216 (365)
+.|.+.-+.+|.++. ....++||+++++.+.+.+. . +.+.+|.+|..... .+ +
T Consensus 107 ~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~---i------~~~~AE~~K~~~~~----~~-~ 170 (239)
T TIGR02529 107 IKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG---I------SFEEAEEYKRGHKD----EE-E 170 (239)
T ss_pred CCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC---C------CHHHHHHHHHhcCC----HH-H
Confidence 456666677787664 45678999999998877663 1 34668888876542 11 1
Q ss_pred HHHhccCCCcccEEEcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCc
Q 017851 217 LETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF 296 (365)
Q Consensus 217 ~~~~~~~~~~~~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i 296 (365)
.. ...+.+. ..+.+.|.+++++.++ +.|+||||+|++
T Consensus 171 ~~---------------------------~~i~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a~i 207 (239)
T TIGR02529 171 IF---------------------------PVVKPVY---------QKMASIVKRHIEGQGV-------KDLYLVGGACSF 207 (239)
T ss_pred HH---------------------------HHHHHHH---------HHHHHHHHHHHHhCCC-------CEEEEECchhcc
Confidence 10 0001111 1255566666665544 369999999999
Q ss_pred cChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhh
Q 017851 297 PGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSI 335 (365)
Q Consensus 297 ~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi 335 (365)
||+.++|.+.+. +++..+.+|.+.+-.|+.+
T Consensus 208 pgl~e~l~~~lg--------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 208 SGFADVFEKQLG--------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hhHHHHHHHHhC--------CCcccCCCCCeehhheeec
Confidence 999999998883 2344567889998888764
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.39 E-value=2.4e-11 Score=109.96 Aligned_cols=230 Identities=14% Similarity=0.112 Sum_probs=151.5
Q ss_pred CCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCCHHHHH
Q 017851 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (365)
Q Consensus 6 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~~ 85 (365)
..-.++||+||+.+|+=.+ +..+. .++ +|+ ..+.+++.|.+.|++...
T Consensus 23 ~~~~~~iDiGSssi~~vv~-~~~~~-----~~~-----------------~~~---------~~~~~vr~G~i~di~~a~ 70 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVL-DEDGQ-----PVA-----------------GAL---------EWADVVRDGIVVDFIGAV 70 (267)
T ss_pred CCEEEEEEccCceEEEEEE-cCCCC-----EEE-----------------EEe---------ccccccCCCEEeeHHHHH
Confidence 4456899999999997554 33222 111 111 124678999999999999
Q ss_pred HHHHHhccc---ccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------Cce
Q 017851 86 KIWHHTFYN---ELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------GVS 150 (365)
Q Consensus 86 ~~l~~~~~~---~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~~t 150 (365)
+.++++... .++.. -..|+++.|.......+..+. -+.+..|++-..++.++.++..+. |.|
T Consensus 71 ~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt 147 (267)
T PRK15080 71 TIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTT 147 (267)
T ss_pred HHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcE
Confidence 998888741 23433 346666777766555566555 666778888888899988776653 567
Q ss_pred EEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEE
Q 017851 151 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 230 (365)
Q Consensus 151 ~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 230 (365)
.++-+.+|.+.. ....++||+++++.+.+.+. . +.+.+|.+|..... .+++.
T Consensus 148 ~i~v~~~g~~~~--~~~~~~GG~~it~~Ia~~l~---i------~~~eAE~lK~~~~~-----~~~~~------------ 199 (267)
T PRK15080 148 GISILKDGKVVY--SADEPTGGTHMSLVLAGAYG---I------SFEEAEQYKRDPKH-----HKEIF------------ 199 (267)
T ss_pred EEEEEECCeEEE--EecccCchHHHHHHHHHHhC---C------CHHHHHHHHhccCC-----HHHHH------------
Confidence 777777887664 35679999999999887763 1 24567777765421 01100
Q ss_pred EcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhh
Q 017851 231 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISAL 310 (365)
Q Consensus 231 ~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~ 310 (365)
.+.+.+++ .+.+.|.+.+++.+ .+.|+||||+|++||+.+.+.+.+.
T Consensus 200 ---------------~ii~~~~~---------~i~~~i~~~l~~~~-------~~~IvLtGG~s~lpgl~e~l~~~lg-- 246 (267)
T PRK15080 200 ---------------PVVKPVVE---------KMASIVARHIEGQD-------VEDIYLVGGTCCLPGFEEVFEKQTG-- 246 (267)
T ss_pred ---------------HHHHHHHH---------HHHHHHHHHHhcCC-------CCEEEEECCcccchhHHHHHHHHhC--
Confidence 00011111 13444555554432 3579999999999999999999883
Q ss_pred CCCCceEEEECCCCCccceeehhhhhh
Q 017851 311 APSSMKIKVVAPPERKYSVWIGGSILA 337 (365)
Q Consensus 311 ~~~~~~v~v~~~~~~~~~~w~Gasi~a 337 (365)
.++..+++|.+..-.|+.+|+
T Consensus 247 ------~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 247 ------LPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred ------CCcccCCCchHHHHHHHHhhC
Confidence 233345678999999998764
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.27 E-value=4.5e-11 Score=120.73 Aligned_cols=222 Identities=16% Similarity=0.191 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHhcc---cccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC---------
Q 017851 80 NWDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN--------- 147 (365)
Q Consensus 80 ~~~~~~~~l~~~~~---~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~--------- 147 (365)
..+....+|+++.. ..++. .-..++++.|..++...|+.+.+. .+..|+..+.++.+|.+|++++
T Consensus 112 ~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~ 188 (621)
T CHL00094 112 PEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAASLAYGLDKKNNET 188 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHhccccCCCCE
Confidence 34555556655542 22322 224688888998888888766555 4677999999999999998765
Q ss_pred --------CceEEEEee--CCee-CCCceEEecCcHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHhhcc
Q 017851 148 --------GVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKL 206 (365)
Q Consensus 148 --------~~t~v~pV~--~g~~-~~~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~ 206 (365)
|.+.|+-+. +|.. +..+....++||.++++.|.+++.++ +.++..... ...++.+|..+
T Consensus 189 vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~L 268 (621)
T CHL00094 189 ILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIEL 268 (621)
T ss_pred EEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 333444332 2221 11122345899999999998877542 222211100 12345555554
Q ss_pred ceeeccHHHHHHHhccCCCcccEEEcCC------C-cE--EeeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCC
Q 017851 207 AYIALDYEQELETAKTSSAVEKSYELPD------G-QV--ITIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCD 276 (365)
Q Consensus 207 ~~v~~~~~~~~~~~~~~~~~~~~~~lpd------~-~~--i~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~ 276 (365)
+... ...+.+|. | .. ..+..++| ...+.|+.. +.+.|.+++.+..
T Consensus 269 S~~~----------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~ 323 (621)
T CHL00094 269 SNLT----------------QTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINR---------CRIPVENALKDAK 323 (621)
T ss_pred CCCC----------------ceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHHcC
Confidence 4210 11111110 1 11 12332222 112222221 3444555665542
Q ss_pred hhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 277 VDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 277 ~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
+...-.+.|+|+||+|++|++.+.|.+.+.. .+....+|..++..||+++|..
T Consensus 324 --~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 324 --LDKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------KPNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred --CChhhCcEEEEECCccCChHHHHHHHHHhCC--------CcCcCCCchhHHHhhhHHHHHH
Confidence 2233458899999999999999999876632 2333456788899999999864
No 27
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.17 E-value=1.3e-10 Score=116.68 Aligned_cols=222 Identities=18% Similarity=0.178 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhcc---cccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC----------
Q 017851 81 WDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN---------- 147 (365)
Q Consensus 81 ~~~~~~~l~~~~~---~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~---------- 147 (365)
.+....+|+++.. +.++.. -..++++.|..++...|+.+.+. .+..|++-+.++.+|.+|++++
T Consensus 107 ~ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~v 183 (599)
T TIGR01991 107 VEVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIY 183 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEE
Confidence 4445555555532 233322 35789999999998888865544 6778999999999999988654
Q ss_pred -------CceEEEEe--eCCee-CCCceEEecCcHHHHHHHHHHHHHhc-CCCccchhH-----HHHHHHHhhccceeec
Q 017851 148 -------GVSHTVPI--YEGYA-LPHAILRLDLAGRDLTDALMKILTER-GYSFTTTAE-----REIVRDMKEKLAYIAL 211 (365)
Q Consensus 148 -------~~t~v~pV--~~g~~-~~~~~~~~~~gG~~l~~~l~~~l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~ 211 (365)
|.+.|+.+ .+|.. +..+.....+||.++++.|.+++.++ +........ ...++.+|+.++.-
T Consensus 184 lV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~-- 261 (599)
T TIGR01991 184 AVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADLNPEDQRLLLQAARAAKEALTDA-- 261 (599)
T ss_pred EEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCC--
Confidence 23333333 23422 11111234899999999999988654 222111100 11233344333211
Q ss_pred cHHHHHHHhccCCCcccEEEcCCCcE--EeeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccc
Q 017851 212 DYEQELETAKTSSAVEKSYELPDGQV--ITIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 288 (365)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lpd~~~--i~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIv 288 (365)
......+.. +|.. +.++.+.| ...+.++.. +.+.|.++++.... ...-.+.|+
T Consensus 262 ------------~~~~i~i~~-~g~~~~~~itr~efe~l~~~ll~~---------i~~~i~~~L~~a~~--~~~~id~Vi 317 (599)
T TIGR01991 262 ------------ESVEVDFTL-DGKDFKGKLTRDEFEALIQPLVQK---------TLSICRRALRDAGL--SVEEIKGVV 317 (599)
T ss_pred ------------ceEEEEEEE-CCcEEEEEEeHHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhhCCEEE
Confidence 001112222 2322 23333322 222333322 45556666655432 223367899
Q ss_pred cccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 289 LSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 289 l~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
|+||+|++|++.++|.+.+.. .+....+|..++-.||+++|..
T Consensus 318 LvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GAai~a~~ 360 (599)
T TIGR01991 318 LVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGAAIQADL 360 (599)
T ss_pred EECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHHHHHHHH
Confidence 999999999999999976532 2233557889999999999855
No 28
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.16 E-value=3.8e-10 Score=114.63 Aligned_cols=222 Identities=15% Similarity=0.188 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHhcc---cccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC---------
Q 017851 80 NWDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN--------- 147 (365)
Q Consensus 80 ~~~~~~~~l~~~~~---~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~--------- 147 (365)
..+....+|+++.. +.++. .-..++++.|..++...|+.+. -..+..|+..+.++++|.+|++++
T Consensus 149 peei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~ 225 (673)
T PLN03184 149 AEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQRTATK-DAGRIAGLEVLRIINEPTAASLAYGFEKKSNET 225 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHH-HHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCE
Confidence 34555566666542 22332 2357899999999888887554 455778999999999999988765
Q ss_pred --------CceEEEEe--eCCee-CCCceEEecCcHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHhhcc
Q 017851 148 --------GVSHTVPI--YEGYA-LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKL 206 (365)
Q Consensus 148 --------~~t~v~pV--~~g~~-~~~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~ 206 (365)
|.+.|+.+ .+|.. +..+.....+||.++++.|.+++..+ +.+...... ...+|.+|+.+
T Consensus 226 vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~L 305 (673)
T PLN03184 226 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIEL 305 (673)
T ss_pred EEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 23333333 23321 11112235899999999998887642 111111000 12244455544
Q ss_pred ceeeccHHHHHHHhccCCCcccEEEcC------CC-cEE--eeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCC
Q 017851 207 AYIALDYEQELETAKTSSAVEKSYELP------DG-QVI--TIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCD 276 (365)
Q Consensus 207 ~~v~~~~~~~~~~~~~~~~~~~~~~lp------d~-~~i--~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~ 276 (365)
+... ...+.+| ++ ..+ .|+.+.| ..++.|++. +.+.|.++++...
T Consensus 306 S~~~----------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r---------~~~~i~~~L~~a~ 360 (673)
T PLN03184 306 SSLT----------------QTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDR---------CKTPVENALRDAK 360 (673)
T ss_pred CCCC----------------cceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC
Confidence 3211 1111111 11 122 2333332 222333332 4555666666554
Q ss_pred hhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 277 VDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 277 ~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
.+. .=++.|+|+||+|++|.+.++|.+.+-. .+....+|..++-.||++.|..
T Consensus 361 ~~~--~dId~ViLvGGssriP~V~~~i~~~fg~--------~~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 361 LSF--KDIDEVILVGGSTRIPAVQELVKKLTGK--------DPNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred CCh--hHccEEEEECCccccHHHHHHHHHHhCC--------CcccccCcchHHHHHHHHHHHH
Confidence 332 3358899999999999999999877621 1223346778899999998754
No 29
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.16 E-value=4.4e-10 Score=114.11 Aligned_cols=202 Identities=17% Similarity=0.236 Sum_probs=121.2
Q ss_pred CCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------------CceEEEEe--eCCeeC-
Q 017851 102 EHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-----------------GVSHTVPI--YEGYAL- 161 (365)
Q Consensus 102 ~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-----------------~~t~v~pV--~~g~~~- 161 (365)
-..++++.|.+++...|+.+. -..+..|++-+.++.+|.+|++++ |.+.|+.+ .+|...
T Consensus 174 v~~~VITVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATK-DAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 357899999999888877554 456668999999999999998876 33344333 345332
Q ss_pred CCceEEecCcHHHHHHHHHHHHHhc-----CCCccchh-H----HHHHHHHhhccceeeccHHHHHHHhccCCCcccEEE
Q 017851 162 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-E----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 231 (365)
Q Consensus 162 ~~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~~-~----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 231 (365)
..+.....+||.++++.|.+++..+ +.++.... . ...++.+|+.++.- ....+.
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~----------------~~~~i~ 316 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSK----------------TQTEIN 316 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CceEEE
Confidence 1222345799999999998877642 22221100 0 12244455544321 011111
Q ss_pred cC----C--C-c--EEeeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHH
Q 017851 232 LP----D--G-Q--VITIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD 301 (365)
Q Consensus 232 lp----d--~-~--~i~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~ 301 (365)
+| | | . .+.++.+.| ...+.+|.. +.+.|.+++.+... .+.-++.|+|+||+|++|++.+
T Consensus 317 i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~---------~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~ 385 (663)
T PTZ00400 317 LPFITADQSGPKHLQIKLSRAKLEELTHDLLKK---------TIEPCEKCIKDAGV--KKDELNDVILVGGMTRMPKVSE 385 (663)
T ss_pred EEeeccCCCCceEEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--CHHHCcEEEEECCccCChHHHH
Confidence 11 1 1 1 233333322 223333332 45666667766532 2334688999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 302 RMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 302 RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
+|.+.+-. .+....+|..++-.||+++|..
T Consensus 386 ~l~~~f~~--------~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 386 TVKKIFGK--------EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHHHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence 99877632 2233456788899999999854
No 30
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.14 E-value=1.9e-10 Score=116.55 Aligned_cols=201 Identities=16% Similarity=0.222 Sum_probs=117.3
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------------CceEEEEe--eCCee-CC
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-----------------GVSHTVPI--YEGYA-LP 162 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-----------------~~t~v~pV--~~g~~-~~ 162 (365)
..++++.|..++...|+.+. -..+..|++-+.++++|.+|++++ |.+.++.+ -+|.. +.
T Consensus 134 ~~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl 212 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATK-DAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL 212 (627)
T ss_pred ceEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 47899999999988887654 455667889899999999988765 22333322 22221 11
Q ss_pred CceEEecCcHHHHHHHHHHHHHhc-----CCCccchh-H----HHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEc
Q 017851 163 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-E----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYEL 232 (365)
Q Consensus 163 ~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~~-~----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 232 (365)
.+.....+||.++++.|.+++.++ +.++.... . ...++.+|+.++.- ....+.+
T Consensus 213 a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~----------------~~~~i~i 276 (627)
T PRK00290 213 STNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSA----------------QQTEINL 276 (627)
T ss_pred EecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CeEEEEE
Confidence 112235799999999998877542 22221110 0 12334444443321 1111111
Q ss_pred C----C--C-c--EEeeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHH
Q 017851 233 P----D--G-Q--VITIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 302 (365)
Q Consensus 233 p----d--~-~--~i~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~R 302 (365)
| | | . .+.|+.+.| ...+.++. .+.+.|.++++..... ..-++.|+|+||+|++|.+.++
T Consensus 277 ~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~l~~a~~~--~~~id~ViLvGGssriP~v~~~ 345 (627)
T PRK00290 277 PFITADASGPKHLEIKLTRAKFEELTEDLVE---------RTIEPCKQALKDAGLS--VSDIDEVILVGGSTRMPAVQEL 345 (627)
T ss_pred eecccCCCCCeEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--hhhCcEEEEECCcCCChHHHHH
Confidence 1 1 1 1 233333322 22233332 2455666666655432 2335789999999999999999
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 303 MSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 303 L~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
|.+.+.. .+....+|..++..||+++|..
T Consensus 346 l~~~fg~--------~~~~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 346 VKEFFGK--------EPNKGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred HHHHhCC--------CCCcCcCChHHHHHhHHHHHHH
Confidence 9877621 2334456788999999998754
No 31
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.11 E-value=7.8e-10 Score=110.68 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=119.8
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------------CceEE--EEeeCCeeC-C
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-----------------GVSHT--VPIYEGYAL-P 162 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-----------------~~t~v--~pV~~g~~~-~ 162 (365)
..+|++.|..++...|+.+.+. .+..|++-+.++++|.+|++++ |.+.| +-+.+|..- .
T Consensus 142 ~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~ 220 (595)
T PRK01433 142 TKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVI 220 (595)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEE
Confidence 5788999999988877755544 6678899999999999998876 22222 222344221 1
Q ss_pred CceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEcCCCcEEeeCC
Q 017851 163 HAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGA 242 (365)
Q Consensus 163 ~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~ 242 (365)
.+.....+||.++++.|.+++..+-..-........++..|+.++.-. .+.. ..+.++.
T Consensus 221 at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~ekaK~~LS~~~------------------~~~~---~~~~itr 279 (595)
T PRK01433 221 ATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKD------------------SFNN---DNISINK 279 (595)
T ss_pred EEcCCcccChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCc------------------cccc---ceEEEcH
Confidence 111234699999999999988754211111111233555555443210 0111 1444544
Q ss_pred ccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEEC
Q 017851 243 ERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVA 321 (365)
Q Consensus 243 ~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~ 321 (365)
+.| ..++.+|.. +.+.|.++++... ..=.+.|+|+||+|++|.+.+.|.+.+. ..+..
T Consensus 280 ~efe~l~~~l~~~---------~~~~i~~~L~~a~----~~~Id~ViLvGGssriP~v~~~l~~~f~--------~~~~~ 338 (595)
T PRK01433 280 QTLEQLILPLVER---------TINIAQECLEQAG----NPNIDGVILVGGATRIPLIKDELYKAFK--------VDILS 338 (595)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHhhcC----cccCcEEEEECCcccChhHHHHHHHHhC--------CCcee
Confidence 333 223334432 4556666666554 1225889999999999999999987662 13344
Q ss_pred CCCCccceeehhhhhhcc
Q 017851 322 PPERKYSVWIGGSILASL 339 (365)
Q Consensus 322 ~~~~~~~~w~Gasi~a~l 339 (365)
+.+|..++-.||+++|..
T Consensus 339 ~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 339 DIDPDKAVVWGAALQAEN 356 (595)
T ss_pred cCCchHHHHHHHHHHHHH
Confidence 557888999999999865
No 32
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.11 E-value=5e-10 Score=113.53 Aligned_cols=201 Identities=15% Similarity=0.193 Sum_probs=115.7
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------------CceEEEE--eeCCee-CC
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-----------------GVSHTVP--IYEGYA-LP 162 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-----------------~~t~v~p--V~~g~~-~~ 162 (365)
..+|++.|..++...|+.+.+. .+..|++-+.++.+|.+|++++ |.+.|+. +.+|.. +.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDA-GRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 4689999999998888765444 5778999999999999988765 2233332 334422 11
Q ss_pred CceEEecCcHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEc
Q 017851 163 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYEL 232 (365)
Q Consensus 163 ~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 232 (365)
.+.....+||.++++.|.+++..+ +.++..... ...++.+|..++.. ....+.+
T Consensus 215 at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~----------------~~~~i~i 278 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGV----------------SVTDISL 278 (668)
T ss_pred EeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEEEE
Confidence 122335799999999988877542 222211100 11234444444321 1111222
Q ss_pred C----C--C-c--EEeeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHH
Q 017851 233 P----D--G-Q--VITIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 302 (365)
Q Consensus 233 p----d--~-~--~i~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~R 302 (365)
| + + . ...++.+.| ..++.|+.. +.+.|.+++.... +.+.-...|+|+||+|+||.+.+.
T Consensus 279 ~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r---------~~~~i~~~L~~ag--~~~~dId~VvLVGGssRiP~V~~~ 347 (668)
T PRK13410 279 PFITATEDGPKHIETRLDRKQFESLCGDLLDR---------LLRPVKRALKDAG--LSPEDIDEVVLVGGSTRMPMVQQL 347 (668)
T ss_pred eeeecCCCCCeeEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCcEEEEECCccccHHHHHH
Confidence 1 1 1 1 122333222 222333322 4455555665432 223346789999999999999999
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 303 MSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 303 L~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
+.+.+.. .+....+|..++-.||+++|..
T Consensus 348 l~~~fg~--------~~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 348 VRTLIPR--------EPNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred HHHHcCC--------CcccCCCCchHHHHhHHHHHHh
Confidence 9865421 2233446778889999998865
No 33
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.09 E-value=4.5e-10 Score=113.31 Aligned_cols=201 Identities=16% Similarity=0.242 Sum_probs=117.5
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------------CceEEEEe--eCCee-C
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------------GVSHTVPI--YEGYA-L 161 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------------~~t~v~pV--~~g~~-~ 161 (365)
..++++.|..++...|+.+.+ ..+..|++-+.++++|.+|++++ |.+.++.+ .+|.. +
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 468899999999888886655 55667889899999999987765 22333222 23322 1
Q ss_pred CCceEEecCcHHHHHHHHHHHHHhc-----CCCccchh-H----HHHHHHHhhccceeeccHHHHHHHhccCCCcccEEE
Q 017851 162 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-E----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 231 (365)
Q Consensus 162 ~~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~~-~----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 231 (365)
..+.....+||.++++.|.+++..+ +.++.... . ...++.+|+.++.- ....+.
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~ 273 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSV----------------LSTEIN 273 (595)
T ss_pred EEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CceEEE
Confidence 1112234799999999998877532 22221110 0 12344455544321 011111
Q ss_pred cC----C--C---cEEeeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHH
Q 017851 232 LP----D--G---QVITIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD 301 (365)
Q Consensus 232 lp----d--~---~~i~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~ 301 (365)
+| | | ..+.++.+.| ...+.++.. +.+.|.+++++... ...-.+.|+|+||+|++|++.+
T Consensus 274 i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~---------~~~~i~~~l~~a~~--~~~~i~~V~LvGGssriP~v~~ 342 (595)
T TIGR02350 274 LPFITADASGPKHLEMTLTRAKFEELTADLVER---------TKEPVRQALKDAGL--SASDIDEVILVGGSTRIPAVQE 342 (595)
T ss_pred eeecccCCCCCeeEEEEEeHHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--CHhHCcEEEEECCcccChHHHH
Confidence 11 1 1 1233333322 222333332 45566666665532 2233688999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 302 RMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 302 RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
.+.+.+.. .+....+|..++..||+++|..
T Consensus 343 ~i~~~f~~--------~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 343 LVKDFFGK--------EPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred HHHHHhCC--------cccCCcCcHHHHHHHHHHHHHH
Confidence 99876631 3344557788999999999754
No 34
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.07 E-value=9.4e-10 Score=111.64 Aligned_cols=206 Identities=15% Similarity=0.232 Sum_probs=117.5
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------------CceEEE--EeeCCee-C
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------------GVSHTV--PIYEGYA-L 161 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------------~~t~v~--pV~~g~~-~ 161 (365)
..++++.|..++...|+.+.+ ..+..|+.-+.++++|.+|++++ |.+.|+ -+.+|.. +
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V 212 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKD-AGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEV 212 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEE
Confidence 578999999998888886554 56668999999999999998765 222332 2233322 1
Q ss_pred CCceEEecCcHHHHHHHHHHHHHhc-----CCCccchh-H----HHHHHHHhhccceeeccHHHHHHHhccCCCcccEEE
Q 017851 162 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-E----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 231 (365)
Q Consensus 162 ~~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~~-~----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 231 (365)
..+.....+||.++++.|.+++.++ +.++.... . ...++..|+.++.-. ......++.
T Consensus 213 ~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~------------~~~i~i~~~ 280 (653)
T PRK13411 213 KATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSML------------TTSINLPFI 280 (653)
T ss_pred EEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC------------ceEEEEeee
Confidence 1112234799999999988877642 22221110 0 122344444433210 000011111
Q ss_pred cCC---C--cEEeeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHH
Q 017851 232 LPD---G--QVITIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSK 305 (365)
Q Consensus 232 lpd---~--~~i~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~ 305 (365)
..| + ..+.++.+.| ...+.||.. +.+.|.+++++.. +...-++.|+|+||+|++|.+.++|.+
T Consensus 281 ~~d~~~~~~~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~v~~~l~~ 349 (653)
T PRK13411 281 TADETGPKHLEMELTRAKFEELTKDLVEA---------TIEPMQQALKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQK 349 (653)
T ss_pred ccCCCCCeeEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHHHCcEEEEECCCCCcchHHHHHHH
Confidence 111 1 1223333332 222223322 4556666666553 333446889999999999999999987
Q ss_pred HHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 306 EISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 306 el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
.+.. ..+....+|..++-.||+++|..
T Consensus 350 ~f~~-------~~~~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 350 FFGG-------KQPDRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred HcCC-------cCcCCCCCchHHHHHHHHHHHHh
Confidence 6531 12334456788889999998854
No 35
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.07 E-value=1.5e-09 Score=109.71 Aligned_cols=205 Identities=17% Similarity=0.181 Sum_probs=118.3
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------------CceEEEEe--eCCeeC-C
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-----------------GVSHTVPI--YEGYAL-P 162 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-----------------~~t~v~pV--~~g~~~-~ 162 (365)
..+|++.|..+....|+.+ .-..+..|+.-+.++.+|.+|++++ |.+.|+-+ .+|... .
T Consensus 161 ~~aVITVPayF~~~qR~at-~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~ 239 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQAT-KDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK 239 (657)
T ss_pred ceEEEEECCCCChHHHHHH-HHHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 4788888988888877754 4556678899899999999988765 23333333 355332 1
Q ss_pred CceEEecCcHHHHHHHHHHHHHhc-----CCCccch-hH----HHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEc
Q 017851 163 HAILRLDLAGRDLTDALMKILTER-----GYSFTTT-AE----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYEL 232 (365)
Q Consensus 163 ~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~-~~----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 232 (365)
.+.....+||.++++.|.+++..+ +.++... .. ...+|.+|..++.... .....++..
T Consensus 240 at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~------------~~i~i~~i~ 307 (657)
T PTZ00186 240 ATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME------------TEVNLPFIT 307 (657)
T ss_pred EecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc------------eEEEEeeec
Confidence 122245899999999988877642 2122110 00 1234455554433210 000111111
Q ss_pred C--CC---cEEeeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHH
Q 017851 233 P--DG---QVITIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKE 306 (365)
Q Consensus 233 p--d~---~~i~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~e 306 (365)
. +| ..+.|+.+.| ..++.|+.. +.+.+.+++..... ...-.+.|+|+||+|+||.+.+.+.+.
T Consensus 308 ~~~~g~~~~~~~ItR~efe~l~~~l~~r---------~~~~v~~~L~~a~~--~~~dId~VvLVGGssriP~V~~~l~~~ 376 (657)
T PTZ00186 308 ANADGAQHIQMHISRSKFEGITQRLIER---------SIAPCKQCMKDAGV--ELKEINDVVLVGGMTRMPKVVEEVKKF 376 (657)
T ss_pred cCCCCCcceEEEecHHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhhCCEEEEECCcccChHHHHHHHHH
Confidence 1 11 1233443333 223333332 34455566654432 233457899999999999999999876
Q ss_pred HHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 307 ISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 307 l~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
+.. ......+|..++-.||+++|..
T Consensus 377 fg~--------~~~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 377 FQK--------DPFRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred hCC--------CccccCCCchHHHHhHHHHHHH
Confidence 632 1123456788999999999864
No 36
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.06 E-value=8.1e-10 Score=111.37 Aligned_cols=220 Identities=18% Similarity=0.123 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhcc---cccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC----------
Q 017851 81 WDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN---------- 147 (365)
Q Consensus 81 ~~~~~~~l~~~~~---~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~---------- 147 (365)
.+....+|+++.. +.++. .-..++++.|..++...|+.+ .-..+..|++-+.++++|.+|++++
T Consensus 127 ~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~-~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~v 203 (616)
T PRK05183 127 VEVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQAT-KDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVI 203 (616)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHH-HHHHHHcCCCeEEEecchHHHHHHhhcccCCCCEE
Confidence 3444555555542 23332 235789999999998888755 5557778999999999999988654
Q ss_pred -------CceEEEEe--eCCee-CCCceEEecCcHHHHHHHHHHHHHhcC-CCccchhH-----HHHHHHHhhccceeec
Q 017851 148 -------GVSHTVPI--YEGYA-LPHAILRLDLAGRDLTDALMKILTERG-YSFTTTAE-----REIVRDMKEKLAYIAL 211 (365)
Q Consensus 148 -------~~t~v~pV--~~g~~-~~~~~~~~~~gG~~l~~~l~~~l~~~~-~~~~~~~~-----~~~~~~ik~~~~~v~~ 211 (365)
|.+.|+.+ .+|.. +..+.....+||.++++.|.+++.++. ........ ...++.+|+.++.
T Consensus 204 lV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~--- 280 (616)
T PRK05183 204 AVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSD--- 280 (616)
T ss_pred EEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCC---
Confidence 23333333 23321 111122357899999999998886542 22111000 1123333433321
Q ss_pred cHHHHHHHhccCCCcccEEEcCCCcEEeeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccc
Q 017851 212 DYEQELETAKTSSAVEKSYELPDGQVITIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 290 (365)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~ 290 (365)
.....+.+++-.. .++.+.| ...+.++.. +.+.|.++++.... ...-.+.|+|+
T Consensus 281 -------------~~~~~i~i~~~~~-~itr~efe~l~~~l~~~---------~~~~i~~~L~~a~~--~~~~i~~ViLv 335 (616)
T PRK05183 281 -------------ADSVEVSVALWQG-EITREQFNALIAPLVKR---------TLLACRRALRDAGV--EADEVKEVVMV 335 (616)
T ss_pred -------------CceEEEEEecCCC-eEcHHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--CcccCCEEEEE
Confidence 1112222222110 1222211 122222221 44555566655422 22235789999
Q ss_pred cCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 291 GGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 291 GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
||+|++|.+.++|.+.+.. .+..+.+|..++-.||+++|..
T Consensus 336 GGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~GAAi~a~~ 376 (616)
T PRK05183 336 GGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIGAAIQADI 376 (616)
T ss_pred CCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHHHHHHHHH
Confidence 9999999999999876632 1233457788999999998864
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.06 E-value=2.2e-09 Score=109.11 Aligned_cols=202 Identities=15% Similarity=0.192 Sum_probs=118.7
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-------------------CceEEEEe--eCCeeC
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-------------------GVSHTVPI--YEGYAL 161 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-------------------~~t~v~pV--~~g~~~ 161 (365)
..++++.|.+++...|+.+. -..+..|++-+.++++|.+|++++ |.+.|+-+ .+|...
T Consensus 141 ~~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~ 219 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATK-DAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHH-HHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence 57899999999888777544 466678999999999999888765 22223222 233221
Q ss_pred -CCceEEecCcHHHHHHHHHHHHHhc------CCCccchhH-----HHHHHHHhhccceeeccHHHHHHHhccCCCcccE
Q 017851 162 -PHAILRLDLAGRDLTDALMKILTER------GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKS 229 (365)
Q Consensus 162 -~~~~~~~~~gG~~l~~~l~~~l~~~------~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 229 (365)
..+.....+||.++++.|.+++..+ +..+..... ...++.+|+.++.- ....
T Consensus 220 v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------------~~~~ 283 (653)
T PTZ00009 220 VKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------------TQAT 283 (653)
T ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC----------------ceEE
Confidence 1111235799999999998877542 122211100 12244444443321 1122
Q ss_pred EEcC---CCc--EEeeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHH
Q 017851 230 YELP---DGQ--VITIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRM 303 (365)
Q Consensus 230 ~~lp---d~~--~i~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL 303 (365)
+.++ ++. .+.++.+.| ..++.+|.. +.+.|.+++..+..+. .-.+.|+|+||+|++|.+.++|
T Consensus 284 i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~~~~--~~i~~ViLvGGssriP~v~~~i 352 (653)
T PTZ00009 284 IEIDSLFEGIDYNVTISRARFEELCGDYFRN---------TLQPVEKVLKDAGMDK--RSVHEVVLVGGSTRIPKVQSLI 352 (653)
T ss_pred EEEEeccCCceEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCCH--HHCcEEEEECCCCCChhHHHHH
Confidence 2222 232 233443333 223334432 4556667777664332 3357899999999999999999
Q ss_pred HHHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 304 SKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 304 ~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
.+.+... .+....+|..++-.||+++|..
T Consensus 353 ~~~f~~~-------~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 353 KDFFNGK-------EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred HHHhCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence 8666321 2333456788899999988754
No 38
>PRK11678 putative chaperone; Provisional
Probab=98.73 E-value=1.1e-07 Score=92.03 Aligned_cols=62 Identities=26% Similarity=0.252 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhc
Q 017851 264 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 338 (365)
Q Consensus 264 l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 338 (365)
+.++|.+++++.... .+.|+||||+|++|++.+.+.+.+-. .++.. .+|-.++-.|++++|.
T Consensus 385 i~~~i~~~L~~a~~~-----~d~VvLvGGsSriP~V~~~l~~~fg~-------~~v~~-g~~~~sVa~Gla~~a~ 446 (450)
T PRK11678 385 ILELVQLALDQAQVK-----PDVIYLTGGSARSPLIRAALAQQLPG-------IPIVG-GDDFGSVTAGLARWAQ 446 (450)
T ss_pred HHHHHHHHHHHcCCC-----CCEEEEcCcccchHHHHHHHHHHCCC-------CcEEe-CCCcchHHHHHHHHHH
Confidence 445555555544322 36799999999999999998876522 12222 3456778889988874
No 39
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.71 E-value=2.4e-08 Score=101.21 Aligned_cols=203 Identities=20% Similarity=0.260 Sum_probs=114.2
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------------CceEEEEe--eCCeeC-
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------------GVSHTVPI--YEGYAL- 161 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------------~~t~v~pV--~~g~~~- 161 (365)
..++++.|..++...|+.+.+ ..+..|++.+.++++|.||++++ |.+.++.+ .+|..-
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~-Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRD-AAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHH-HHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccc-cccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 468999999999888875554 44567888889999999887544 22333332 344332
Q ss_pred CCceEEecCcHHHHHHHHHHHHHhc-----CCCccchh-H----HHHHHHHhhccceeeccHHHHHHHhccCCCcccEEE
Q 017851 162 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-E----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 231 (365)
Q Consensus 162 ~~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~~-~----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 231 (365)
........+||.++++.|.+++.++ +.+..... . ...++.+|+.++.. ......+.
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~--------------~~~~~~~~ 280 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSN--------------DNTEITIS 280 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTS--------------SSSEEEEE
T ss_pred cccccccccccceecceeeccccccccccccccccccccccccccccccccccccccc--------------cccccccc
Confidence 1222345799999999999888642 22221110 0 12233444433321 01111111
Q ss_pred ----cCCCcE--EeeCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHH
Q 017851 232 ----LPDGQV--ITIGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 304 (365)
Q Consensus 232 ----lpd~~~--i~i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~ 304 (365)
..++.. +.|+.+.| ...+.+++. +.+.|.++++.+... ..=++.|+|+||+|++|.+.+.|.
T Consensus 281 ~~~~~~~~~~~~~~itr~~fe~l~~~~~~~---------~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~ 349 (602)
T PF00012_consen 281 IESLYDDGEDFSITITREEFEELCEPLLER---------IIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALK 349 (602)
T ss_dssp EEEEETTTEEEEEEEEHHHHHHHTHHHHHH---------THHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHH
T ss_pred cccccccccccccccccceecccccccccc---------ccccccccccccccc--ccccceeEEecCcccchhhhhhhh
Confidence 122332 33333333 223333332 566777777765332 333577999999999999999887
Q ss_pred HHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 305 KEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 305 ~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
+.+.. .+....+|..++-.||+++|..
T Consensus 350 ~~f~~--------~~~~~~~p~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 350 ELFGK--------KISKSVNPDEAVARGAALYAAI 376 (602)
T ss_dssp HHTTS--------EEB-SS-TTTHHHHHHHHHHHH
T ss_pred hcccc--------ccccccccccccccccccchhh
Confidence 66531 3445567788999999999854
No 40
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.54 E-value=3.5e-07 Score=87.05 Aligned_cols=161 Identities=16% Similarity=0.217 Sum_probs=100.7
Q ss_pred CHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------------CceEEEEeeCCeeCCCceEEecCcHHHHH
Q 017851 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-----------------GVSHTVPIYEGYALPHAILRLDLAGRDLT 176 (365)
Q Consensus 114 ~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-----------------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~ 176 (365)
++...+.+.+ +++..|..-+.+..+|+++++++ |.|+++.+.+|.+.. ....++||++++
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 4555555555 45678888888999999888764 567888888887653 467899999999
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEcCC---CcEEeeCCccc-ccccccC
Q 017851 177 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD---GQVITIGAERF-RCPEVLF 252 (365)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd---~~~i~i~~~r~-~~~E~LF 252 (365)
+.+.+.+. ...+.+|++|.+++....+. ......+.++. +....++.+.+ .+.+.++
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~ 293 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCASIPL----------EGPDENIEIPSVGERPPRSLSRKELAEIIEARA 293 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEecccC----------CCCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence 99877652 13567999999988763221 00111222221 11122221111 1111112
Q ss_pred CCccCCCCCCChHHHHH-HHHHhCChhHHHhhhcc-cccccCccCccChHHHHHHHHH
Q 017851 253 QPSMIGMESAGIHETTY-NSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSKEIS 308 (365)
Q Consensus 253 ~p~~~~~~~~~l~~~I~-~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~g~~~RL~~el~ 308 (365)
. .+.+.|. +.+++.+.+ .-..+ |+||||+|++||+.+++.+.+.
T Consensus 294 ~---------ei~~~i~~~~L~~~~~~---~~i~~gIvLtGG~S~ipgi~~~l~~~~~ 339 (371)
T TIGR01174 294 E---------EILEIVKQKELRKSGFK---EELNGGIVLTGGGAQLEGIVELAEKVFD 339 (371)
T ss_pred H---------HHHHHHHHHHHHhcCCc---ccCCCEEEEeChHHcccCHHHHHHHHhC
Confidence 1 2455554 566555433 22455 9999999999999999998874
No 41
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.51 E-value=3.6e-07 Score=88.25 Aligned_cols=190 Identities=17% Similarity=0.201 Sum_probs=119.9
Q ss_pred CHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------------CceEEEEeeCCeeCCCceEEecCcHHHHH
Q 017851 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-----------------GVSHTVPIYEGYALPHAILRLDLAGRDLT 176 (365)
Q Consensus 114 ~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-----------------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~ 176 (365)
+....+.+.+ +++..|..-..++.+|++++++. |.|.++-+.+|.+. ....+++||.+++
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHH
Confidence 4455566666 56888988899999999998875 56788888888766 4577899999999
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEcCC--C-cEEeeCCcccccccccCC
Q 017851 177 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD--G-QVITIGAERFRCPEVLFQ 253 (365)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--~-~~i~i~~~r~~~~E~LF~ 253 (365)
+.+.+.|. . ....+|.+|.+++....+.. .....+.+++ + ....++ +....+++..
T Consensus 241 ~dIa~~l~---i------~~~~AE~lK~~~g~~~~~~~----------~~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~ 299 (420)
T PRK09472 241 SDIAYAFG---T------PPSDAEAIKVRHGCALGSIV----------GKDESVEVPSVGGRPPRSLQ--RQTLAEVIEP 299 (420)
T ss_pred HHHHHHhC---c------CHHHHHHHHHhcceeccccC----------CCCceeEecCCCCCCCeEEc--HHHHHHHHHH
Confidence 99887663 1 34678999988765432210 0011222221 1 001111 1111111111
Q ss_pred CccCCCCCCChHHHHHHHHHhCChhHHH-----hhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECC------
Q 017851 254 PSMIGMESAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP------ 322 (365)
Q Consensus 254 p~~~~~~~~~l~~~I~~~i~~~~~d~r~-----~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~------ 322 (365)
. ...|.+.|.+++..++.+++. .+.+.|+||||+|+|||+.+.+.+.+.. ++++..|
T Consensus 300 r------~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~ 367 (420)
T PRK09472 300 R------YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGL 367 (420)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCC
Confidence 0 112445666677666666553 3455699999999999999999887742 3344322
Q ss_pred ----CCCccceeehhhhhhcc
Q 017851 323 ----PERKYSVWIGGSILASL 339 (365)
Q Consensus 323 ----~~~~~~~w~Gasi~a~l 339 (365)
.+|.+++-.|...|+.-
T Consensus 368 ~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 368 TDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred hhhcCCcHHHHHHHHHHHhhh
Confidence 36788999998888653
No 42
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.25 E-value=2.8e-05 Score=73.04 Aligned_cols=175 Identities=13% Similarity=0.185 Sum_probs=95.2
Q ss_pred CCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCC-CCcccc------------CCCcc---ccccchhhhccCcceee
Q 017851 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRH-TGVMVG------------MGQKD---AYVGDEAQSKRGILTLK 70 (365)
Q Consensus 7 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~-~~~~~~------------~~~~~---~~~g~~~~~~~~~~~~~ 70 (365)
+.++=||+|-.++|+-+... ...+|+.++.... ...+.+ .++.. +++|+++........-.
T Consensus 2 ~~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~~~~~ 78 (344)
T PRK13917 2 VYVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNTGKDT 78 (344)
T ss_pred ceEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccccCCc
Confidence 45788999999999866421 2345666643321 111111 12334 77887764322110000
Q ss_pred ccccCCccCCHHHHHHHHHHhccccccc--CCCCCceE--EecCCCCC-HHhHHHHHHHhhcc-----------CCCCce
Q 017851 71 YPIEHGIVSNWDDMEKIWHHTFYNELRV--APEEHPIL--LTEAPLNP-KANREKMTQIMFET-----------FNAPAM 134 (365)
Q Consensus 71 ~p~~~g~i~~~~~~~~~l~~~~~~~L~~--~~~~~~vv--l~e~~~~~-~~~r~~l~~~lfe~-----------l~~~~v 134 (365)
+-.+... .-+.+..++..++...+.. ..+...++ +-.|...- ...++.+.+.+-.. ..+..|
T Consensus 79 ~~~~~~y--~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V 156 (344)
T PRK13917 79 YSTNDRY--DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGV 156 (344)
T ss_pred ccccccc--cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEE
Confidence 0011111 1235666665554222211 11222333 34454332 22235565554222 456778
Q ss_pred ecccchhhhhhcC-------------------------CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhc
Q 017851 135 YVAIQAVLSLYAN-------------------------GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 186 (365)
Q Consensus 135 ~~~~~~~~a~~~~-------------------------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~ 186 (365)
.++|+++.|+|.. +.|.++.+.++.+.......++.|+..+.+.+.+.+..+
T Consensus 157 ~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 233 (344)
T PRK13917 157 KVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK 233 (344)
T ss_pred EEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence 9999998887532 456666777777777776778999999999999998543
No 43
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.4e-05 Score=75.84 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=99.6
Q ss_pred CCCcEEEeCCCCcEEEeeeCCC-CCCC--------CCCcceEeeCCCCccccCCCccccccchhhhc------cCcceee
Q 017851 6 DIQPLVCDNGTGMVKAGFAGDD-APRA--------VFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK 70 (365)
Q Consensus 6 ~~~~vViD~Gs~~ik~G~ag~~-~P~~--------~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~ 70 (365)
-..+|=||+||.++-+.+.... .|.. ..||+++-.. ..+.++|..+... ...+.++
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~---------~~~~~vG~~A~~q~~~~p~~t~~~~k 74 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSK---------NGEVLVGQAAKRQAVDNPENTIFSIK 74 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECC---------CCCEEecHHHHHHhhhCCcceEEEEe
Confidence 3467999999999999887644 4442 2344443322 2256788766543 1123333
Q ss_pred ccccCC------------ccCC-HHHHHHHHHHhcc---cccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCce
Q 017851 71 YPIEHG------------IVSN-WDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAM 134 (365)
Q Consensus 71 ~p~~~g------------~i~~-~~~~~~~l~~~~~---~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v 134 (365)
+.+-.+ .... -+....+|.++-. ..|+ ..-..++++-|.+.....|. .++-..+..|++-+
T Consensus 75 r~~G~~~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~~v~~~VItVPayF~d~qR~-at~~A~~iaGl~vl 151 (579)
T COG0443 75 RKIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--EKVTDAVITVPAYFNDAQRQ-ATKDAARIAGLNVL 151 (579)
T ss_pred hhcCCCCCCCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--CCcceEEEEeCCCCCHHHHH-HHHHHHHHcCCCeE
Confidence 333211 1111 2333344444321 1222 23368889989988888866 55556666899999
Q ss_pred ecccchhhhhhcC-----------------CceE--EEEeeCCee-CCCceEEecCcHHHHHHHHHHHHHh
Q 017851 135 YVAIQAVLSLYAN-----------------GVSH--TVPIYEGYA-LPHAILRLDLAGRDLTDALMKILTE 185 (365)
Q Consensus 135 ~~~~~~~~a~~~~-----------------~~t~--v~pV~~g~~-~~~~~~~~~~gG~~l~~~l~~~l~~ 185 (365)
.++++|.+|+|++ |.+. ++=+-+|.. +........+||++++..|...+..
T Consensus 152 rlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~ 222 (579)
T COG0443 152 RLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVM 222 (579)
T ss_pred EEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHH
Confidence 9999999999988 2233 333334421 2223344679999999998877654
No 44
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.02 E-value=5.7e-05 Score=70.41 Aligned_cols=171 Identities=11% Similarity=-0.005 Sum_probs=100.0
Q ss_pred EeCCCCcEEEeeeC-CCCC-CCCCCcceEeeCCCCc-c-----------ccCCCccccccchhhhccCcceeeccccCCc
Q 017851 12 CDNGTGMVKAGFAG-DDAP-RAVFPSIVGRPRHTGV-M-----------VGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 77 (365)
Q Consensus 12 iD~Gs~~ik~G~ag-~~~P-~~~~ps~~~~~~~~~~-~-----------~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~ 77 (365)
||+|-.++|+-+.. +..+ +..+||.++....... . ...++..++||+.+....+. ...+.+....
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~-~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADT-NRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccC-ccceeccccc
Confidence 79999999987643 2232 3467877754221110 0 01345677888876332211 0011122222
Q ss_pred cCCHHHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhcc--------CCCCceecccchhhhhhcC--
Q 017851 78 VSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFET--------FNAPAMYVAIQAVLSLYAN-- 147 (365)
Q Consensus 78 i~~~~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~--------l~~~~v~~~~~~~~a~~~~-- 147 (365)
.. -+....++.+.+.. .+.+ .-..+++-.|...-...++.+.+.+-.. ..+..|.++|+++.|.+..
T Consensus 81 ~~-~~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 TE-TPEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred cC-CHHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 21 13455566666522 2221 1224666666655556677777776532 4678899999998776531
Q ss_pred -------------------CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhc
Q 017851 148 -------------------GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 186 (365)
Q Consensus 148 -------------------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~ 186 (365)
+.|.++.+.++.+..+....++.|...+.+.+.+.+.++
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 345666666777777666678999999999999988754
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.93 E-value=0.00024 Score=66.89 Aligned_cols=110 Identities=20% Similarity=0.327 Sum_probs=63.1
Q ss_pred CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcc
Q 017851 148 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVE 227 (365)
Q Consensus 148 ~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 227 (365)
..|+++-+.+|.++ ....+++||+++++.+.+.+. .+.+.++.+|..... ..+...+.
T Consensus 190 ~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~~---------i~~~~Ae~~k~~~~l-~~~~~~~~---------- 247 (340)
T PF11104_consen 190 SSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIARELG---------IDFEEAEELKRSGGL-PEEYDQDA---------- 247 (340)
T ss_dssp S-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHTT-----------HHHHHHHHHHT-------HHHH----------
T ss_pred CeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhcC---------CCHHHHHHHHhcCCC-CcchHHHH----------
Confidence 45677778888877 347789999999999887752 134556666654321 11110000
Q ss_pred cEEEcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHH
Q 017851 228 KSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI 307 (365)
Q Consensus 228 ~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el 307 (365)
.+..+ ..|..-|.++++-.-......-.+.|+||||+|+++|+.+.|.++|
T Consensus 248 --------------------l~~~~---------~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l 298 (340)
T PF11104_consen 248 --------------------LRPFL---------EELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL 298 (340)
T ss_dssp --------------------HHHHH---------HHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH
T ss_pred --------------------HHHHH---------HHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH
Confidence 00001 0145555666653332333445788999999999999999999998
Q ss_pred H
Q 017851 308 S 308 (365)
Q Consensus 308 ~ 308 (365)
.
T Consensus 299 ~ 299 (340)
T PF11104_consen 299 G 299 (340)
T ss_dssp T
T ss_pred C
Confidence 4
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=97.87 E-value=0.00063 Score=64.18 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=84.5
Q ss_pred CHHhHHHHHHHhhccCCCCceecccchhhh--hhc---------------C-------CceEEEEeeCCeeCCCceEEec
Q 017851 114 PKANREKMTQIMFETFNAPAMYVAIQAVLS--LYA---------------N-------GVSHTVPIYEGYALPHAILRLD 169 (365)
Q Consensus 114 ~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a--~~~---------------~-------~~t~v~pV~~g~~~~~~~~~~~ 169 (365)
++...+.+.++ |+..|+.-..+..++++. ++. . +.|+++-+.+|.+. ....++
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREVP 217 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEee
Confidence 66666777666 455665544445454432 331 1 45677777888777 357889
Q ss_pred CcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEcCCCcEEeeCCccccccc
Q 017851 170 LAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPE 249 (365)
Q Consensus 170 ~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~r~~~~E 249 (365)
+||.++++.+.+.+. . +.+.++++|.+..+.. +.+.+ +.+
T Consensus 218 ~G~~~i~~~i~~~~~---~------~~~~Ae~~k~~~~~~~-~~~~~------------------------------~~~ 257 (348)
T TIGR01175 218 FGTRQLTSELSRAYG---L------NPEEAGEAKQQGGLPL-LYDPE------------------------------VLR 257 (348)
T ss_pred chHHHHHHHHHHHcC---C------CHHHHHHHHhcCCCCC-chhHH------------------------------HHH
Confidence 999999998876652 1 3456777877654321 11000 000
Q ss_pred ccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHH
Q 017851 250 VLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIS 308 (365)
Q Consensus 250 ~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~ 308 (365)
..+ ..|..-|.++++-.-........+.|+||||+++++||.+.|++++.
T Consensus 258 ~~~---------~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 258 RFK---------GELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHH---------HHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 000 01333444555322111122236779999999999999999999885
No 47
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=97.81 E-value=4.8e-05 Score=72.42 Aligned_cols=188 Identities=19% Similarity=0.257 Sum_probs=112.0
Q ss_pred CHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------------CceEEEEeeCCeeCCCceEEecCcHHHHH
Q 017851 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-----------------GVSHTVPIYEGYALPHAILRLDLAGRDLT 176 (365)
Q Consensus 114 ~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-----------------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~ 176 (365)
+...-+++.++ .|.-+..-..++-+|+++..++ |.|++....+|.+. ....+|+||++++
T Consensus 163 ~~~~~~Nl~k~-v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvgG~~vT 239 (418)
T COG0849 163 PKNILENLEKC-VERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVGGDHVT 239 (418)
T ss_pred chHHHHHHHHH-HHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeCccHHH
Confidence 44444555544 4445566566777888888776 67888888899877 4477899999999
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEcCC--CcE-EeeCCcccccccccCC
Q 017851 177 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD--GQV-ITIGAERFRCPEVLFQ 253 (365)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--~~~-i~i~~~r~~~~E~LF~ 253 (365)
.-+.+.|.- +.+.+|+||.+++....+.. .....++.|. +.. ..++ +....++.-.
T Consensus 240 ~DIa~~l~t---------~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~~~~~t--~~~ls~II~a 298 (418)
T COG0849 240 KDIAKGLKT---------PFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDIPRQVT--RSELSEIIEA 298 (418)
T ss_pred HHHHHHhCC---------CHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcccchhh--HHHHHHHHHh
Confidence 999988842 46789999998876533210 0111222221 111 0000 0000000000
Q ss_pred CccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEEC----------CC
Q 017851 254 PSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVA----------PP 323 (365)
Q Consensus 254 p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~----------~~ 323 (365)
-..-+.++|...|++.-.. ..+-..|+||||+++++|+.+-...-+.. .+++-. ..
T Consensus 299 ------R~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~ 364 (418)
T COG0849 299 ------RVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIAR 364 (418)
T ss_pred ------hHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhcc
Confidence 0112344555555554322 55677899999999999998755544431 233322 23
Q ss_pred CCccceeehhhhhhcc
Q 017851 324 ERKYSVWIGGSILASL 339 (365)
Q Consensus 324 ~~~~~~w~Gasi~a~l 339 (365)
+|.|++-.|.-.++..
T Consensus 365 ~p~fs~avGl~~~~~~ 380 (418)
T COG0849 365 NPAFSTAVGLLLYGAL 380 (418)
T ss_pred CchhhhhHHHHHHHhh
Confidence 5899999998888764
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.25 E-value=0.0094 Score=54.18 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=67.2
Q ss_pred CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcc
Q 017851 148 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVE 227 (365)
Q Consensus 148 ~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 227 (365)
..|.+.-+.+|.++.. +..++||+.++..+.+... .+....+++|....-- .+|..+.-.
T Consensus 203 t~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~---------L~~~~a~~~k~~~~~P-~~y~~~vl~-------- 262 (354)
T COG4972 203 TSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYS---------LTEEKAEEIKRGGTLP-TDYGSEVLR-------- 262 (354)
T ss_pred cceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhC---------CChhHhHHHHhCCCCC-CchhHHHHH--------
Confidence 3567788899998864 8889999999999887763 1234566666644322 222211100
Q ss_pred cEEEcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHH
Q 017851 228 KSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI 307 (365)
Q Consensus 228 ~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el 307 (365)
+ |. ..|.+-|.++|+-.-.----.-+..|+|+||++.+.|+.+-+.+.|
T Consensus 263 ----------------~-------f~--------~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 263 ----------------P-------FL--------GELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred ----------------H-------HH--------HHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 0 00 0144455555542210000112567999999999999999999988
Q ss_pred H
Q 017851 308 S 308 (365)
Q Consensus 308 ~ 308 (365)
.
T Consensus 312 ~ 312 (354)
T COG4972 312 S 312 (354)
T ss_pred C
Confidence 4
No 49
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.012 Score=58.49 Aligned_cols=205 Identities=17% Similarity=0.185 Sum_probs=110.4
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcCC------------------c---eEEEEeeCCee-
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYANG------------------V---SHTVPIYEGYA- 160 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~~------------------~---t~v~pV~~g~~- 160 (365)
..++++-|.......|.. ++-.-...|.+.+-++++|.+++.++| . .+++-+.+|.-
T Consensus 144 ~~aviTVPa~F~~~Qr~a-t~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAA-TKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHH-HHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 467788787777777664 444444567788899999988877751 1 14455556632
Q ss_pred CCCceEEecCcHHHHHHHHHHHHHh-----cCCCccchhH-----HHHHHHHhhccceeeccHHHHHHHhccCCCcccEE
Q 017851 161 LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 230 (365)
Q Consensus 161 ~~~~~~~~~~gG~~l~~~l~~~l~~-----~~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 230 (365)
+.....-.++||.++++.|.+++.. .+.+...... ...+|..|..+.....- ....-
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~-------------~i~vd 289 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQA-------------SIEID 289 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccc-------------eeccc
Confidence 2333344689999999888776642 1212211110 12334444444221100 00000
Q ss_pred EcCCCcEEe--eCCccc-ccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHH
Q 017851 231 ELPDGQVIT--IGAERF-RCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI 307 (365)
Q Consensus 231 ~lpd~~~i~--i~~~r~-~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el 307 (365)
.|-+|..+. +...|| ..+.-||.. ..+.+.++++..- +-+.-.+-||++||.|.+|.+..-++.=+
T Consensus 290 sL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~--~dk~~i~~vvlVGGstriPk~~~ll~d~f 358 (620)
T KOG0101|consen 290 SLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAK--LDKSDIDEVVLVGGSTRIPKVQKLLEDFF 358 (620)
T ss_pred hhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhc--cCccCCceeEEecCcccchHHHHHHHHHh
Confidence 112222221 122233 223445543 2344445555432 22334566999999999998876665443
Q ss_pred HhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 308 SALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 308 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
.. -.+..+-+|...+-.||++-|.+
T Consensus 359 ~~-------k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 359 NG-------KELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred cc-------cccccCCCHHHHHHhhHHHHhhh
Confidence 21 12334446778888888888766
No 50
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.025 Score=56.69 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=54.3
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC----------------------CceEEEEeeCCee
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN----------------------GVSHTVPIYEGYA 160 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~----------------------~~t~v~pV~~g~~ 160 (365)
..++++.|++..+..|..+.+..- -.|..-++++.+..+++..+ |.|+++-|.--.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa~-iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAAQ-IAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHHH-hcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 578999999999999987776542 35667788898877766443 4555554432111
Q ss_pred CC-------CceEE------ecCcHHHHHHHHHHHHHh
Q 017851 161 LP-------HAILR------LDLAGRDLTDALMKILTE 185 (365)
Q Consensus 161 ~~-------~~~~~------~~~gG~~l~~~l~~~l~~ 185 (365)
-. ..++. ...||..++..|+.+|..
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 11 11111 257899999999988874
No 51
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.25 E-value=0.085 Score=47.24 Aligned_cols=43 Identities=30% Similarity=0.623 Sum_probs=35.4
Q ss_pred ccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhh
Q 017851 286 NIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSIL 336 (365)
Q Consensus 286 nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 336 (365)
.|+++||.++.+++.++|.+.|. ..+..++++.+..-+||+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHhC
Confidence 79999999999999999998882 35666777778888888753
No 52
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=95.91 E-value=0.0058 Score=56.89 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=52.9
Q ss_pred HHHHhcccccccCCCCCceEEecCCC---CCH--HhHHHHHH---Hhhc--------cCCCCceecccchhhhhhcC---
Q 017851 87 IWHHTFYNELRVAPEEHPILLTEAPL---NPK--ANREKMTQ---IMFE--------TFNAPAMYVAIQAVLSLYAN--- 147 (365)
Q Consensus 87 ~l~~~~~~~L~~~~~~~~vvl~e~~~---~~~--~~r~~l~~---~lfe--------~l~~~~v~~~~~~~~a~~~~--- 147 (365)
...|.+ .+-+..+.+-.+++..|.- ... ..++.+.+ -+.. .+.+..|.+.|+++.|.|..
T Consensus 81 av~haL-~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 81 AVHHAL-LKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHH-HHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHH-HHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 345555 3345567666677777621 111 11222221 1211 34477899999999988775
Q ss_pred -------------Cc-eEEEEeeCCeeCC-CceEEecCcHHHHHHHHHHHHHh
Q 017851 148 -------------GV-SHTVPIYEGYALP-HAILRLDLAGRDLTDALMKILTE 185 (365)
Q Consensus 148 -------------~~-t~v~pV~~g~~~~-~~~~~~~~gG~~l~~~l~~~l~~ 185 (365)
|. +.++-|.++.... .+....+.|-..+.+.+.+.|..
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred hcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 33 3455555544333 33334578999999999998875
No 53
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.1 Score=48.83 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=47.8
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC-----------------Cce---EEEEeeCCee-C
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN-----------------GVS---HTVPIYEGYA-L 161 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~-----------------~~t---~v~pV~~g~~-~ 161 (365)
...+++.|.+.....|+. ++-.=-.-|..-+-++.+|-+|+.++ |.| +++-|.+|.- +
T Consensus 173 ~~AVvTvPAYFNDAQrQA-TKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQA-TKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhh-hcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 355666677777777663 33333333455567888888777665 222 4566666643 1
Q ss_pred CCceEEecCcHHHHHHHHHHHHH
Q 017851 162 PHAILRLDLAGRDLTDALMKILT 184 (365)
Q Consensus 162 ~~~~~~~~~gG~~l~~~l~~~l~ 184 (365)
........+||.++++...+++.
T Consensus 252 laTnGDThLGGEDFD~rvm~~fi 274 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFI 274 (663)
T ss_pred EecCCCcccCccchHHHHHHHHH
Confidence 22223457899888877665543
No 54
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=93.27 E-value=0.065 Score=47.97 Aligned_cols=50 Identities=20% Similarity=0.447 Sum_probs=40.2
Q ss_pred cccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhh
Q 017851 285 GNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 337 (365)
Q Consensus 285 ~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 337 (365)
++|+++||.++.+++.+.|+++|... ...+.+..+++|++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999998532 124556667889999999998875
No 55
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=92.63 E-value=0.064 Score=48.75 Aligned_cols=49 Identities=16% Similarity=0.378 Sum_probs=39.7
Q ss_pred hhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEE-CCCCCccceeehhhhhhc
Q 017851 282 DLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVV-APPERKYSVWIGGSILAS 338 (365)
Q Consensus 282 ~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~-~~~~~~~~~w~Gasi~a~ 338 (365)
.+-..|+++||.+..+|+.+.|.++|.. ++. .+++|++..-+||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence 3456799999999999999999998832 333 366789999999999983
No 56
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=91.99 E-value=0.074 Score=50.41 Aligned_cols=47 Identities=28% Similarity=0.556 Sum_probs=40.2
Q ss_pred hcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhc
Q 017851 284 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 338 (365)
Q Consensus 284 ~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 338 (365)
-+.|+++||.++.+|+.+.|.+.|. .++..|++|++..-+||+++|+
T Consensus 356 ~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 356 REPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 4459999999999999999998883 3566688999999999999884
No 57
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=91.46 E-value=0.12 Score=48.17 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=39.9
Q ss_pred cccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhc
Q 017851 287 IVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 338 (365)
Q Consensus 287 Ivl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 338 (365)
|+++||++...++.+-|.+.| ..+|..|+++++.--.||+++++
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHh
Confidence 999999999999999999888 35889999999999999999885
No 58
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=91.39 E-value=0.19 Score=47.36 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=42.3
Q ss_pred hhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhh
Q 017851 283 LYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 337 (365)
Q Consensus 283 l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 337 (365)
+-..|+++||.++-+||.+.|.+.|....+ ..+|..+++|++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 346799999999999999999998864332 2467778899999999999875
No 59
>PRK13317 pantothenate kinase; Provisional
Probab=90.92 E-value=0.21 Score=45.38 Aligned_cols=52 Identities=23% Similarity=0.171 Sum_probs=41.8
Q ss_pred hhhccccccc-CccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhc
Q 017851 282 DLYGNIVLSG-GSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 338 (365)
Q Consensus 282 ~l~~nIvl~G-G~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 338 (365)
.-.++|+++| |.+..|++.++|.+.++. ...++..+++|++..-+||++++.
T Consensus 221 ~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 221 KNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred cCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHhh
Confidence 3348999999 799999999999987752 234667788899999999998864
No 60
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=5.7 Score=40.13 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=52.6
Q ss_pred CCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC----------------------Cce----EEEE
Q 017851 101 EEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN----------------------GVS----HTVP 154 (365)
Q Consensus 101 ~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~----------------------~~t----~v~p 154 (365)
.-..++|..|.+.....|..++...- ..|+.-+-++.+.-+++.++ |++ +++.
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA~-iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAAR-IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHHh-hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 44688999999999999988777643 35666677777765554443 111 1222
Q ss_pred eeCCeeC-CCceEEecCcHHHHHHHHHHHHHh
Q 017851 155 IYEGYAL-PHAILRLDLAGRDLTDALMKILTE 185 (365)
Q Consensus 155 V~~g~~~-~~~~~~~~~gG~~l~~~l~~~l~~ 185 (365)
.-.|..- ..+.-.-.+||+++++.|.+++..
T Consensus 215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred eccCcceeeeeecccccccchHHHHHHHHHHH
Confidence 2233221 112222378999999999988764
No 61
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=88.33 E-value=1.2 Score=43.17 Aligned_cols=160 Identities=16% Similarity=0.162 Sum_probs=86.7
Q ss_pred CCCCcEEEeCCCCcEEEeeeC---C-CCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCC
Q 017851 5 EDIQPLVCDNGTGMVKAGFAG---D-DAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN 80 (365)
Q Consensus 5 ~~~~~vViD~Gs~~ik~G~ag---~-~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~ 80 (365)
++-..|=||+||.+++.=||- + ..+...+|-+.- ..+++++= +. -...|+.....-|
T Consensus 4 ~~i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I-----------~dkev~yr-------S~-i~fTPl~~~~~ID 64 (475)
T PRK10719 4 EELLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEI-----------IDKEIIYR-------SP-IYFTPLLKQGEID 64 (475)
T ss_pred cEEEEEEEeccCceEEEEEEEEEEecccccccCceEEE-----------eeeEEEEe-------cC-ceecCCCCCcccc
Confidence 344568899999999987772 1 112222221110 01111111 11 1357887777779
Q ss_pred HHHHHHHHHHhcccccccCCCC--C-ceEEecCCCCCHHhHHHHHHHhh----------ccCCCCceecccchhhhhhcC
Q 017851 81 WDDMEKIWHHTFYNELRVAPEE--H-PILLTEAPLNPKANREKMTQIMF----------ETFNAPAMYVAIQAVLSLYAN 147 (365)
Q Consensus 81 ~~~~~~~l~~~~~~~L~~~~~~--~-~vvl~e~~~~~~~~r~~l~~~lf----------e~l~~~~v~~~~~~~~a~~~~ 147 (365)
-++++++.+.-| ++-++.|++ . .++++-. ......-++..+.+= --+++.++ +. ++++..+.
T Consensus 65 ~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~-~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~i--va-~~ASg~av 139 (475)
T PRK10719 65 EAAIKELIEEEY-QKAGIAPESIDSGAVIITGE-TARKENAREVVMALSGSAGDFVVATAGPDLESI--IA-GKGAGAQT 139 (475)
T ss_pred HHHHHHHHHHHH-HHcCCCHHHccccEEEEEec-hhHHHHHHHHHHHhcccccceeeeccCccHHHh--hh-HHHhhHHH
Confidence 999999999887 677777764 2 3334332 222222222222210 11222332 11 44433332
Q ss_pred ----------------CceEEEEeeCCeeCCCceEEecCcHHHHHH-----------HHHHHHHhcCCCc
Q 017851 148 ----------------GVSHTVPIYEGYALPHAILRLDLAGRDLTD-----------ALMKILTERGYSF 190 (365)
Q Consensus 148 ----------------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~-----------~l~~~l~~~~~~~ 190 (365)
|.|++.-..+|.+.. ....++||++++. -.++++.+.+..+
T Consensus 140 LseEke~gVa~IDIGgGTT~iaVf~~G~l~~--T~~l~vGG~~IT~D~~~~i~yis~~~~~l~~~~~~~~ 207 (475)
T PRK10719 140 LSEERNTRVLNIDIGGGTANYALFDAGKVID--TACLNVGGRLIETDSQGRVTYISPPGQMILDELGLAI 207 (475)
T ss_pred hhhhccCceEEEEeCCCceEEEEEECCEEEE--EEEEecccceEEECCCCCEEEEChHHHHHHHHcCCCc
Confidence 677888888998773 4677999987765 3556666655543
No 62
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=88.13 E-value=0.17 Score=42.99 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=82.4
Q ss_pred hhccCCCCceecccchhhhhhcC------------CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccc
Q 017851 125 MFETFNAPAMYVAIQAVLSLYAN------------GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTT 192 (365)
Q Consensus 125 lfe~l~~~~v~~~~~~~~a~~~~------------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~ 192 (365)
++|.-|...++.+.+|-++++-. |.|-|.-+-+|.++.. -..+.||.+++--|.- .++.
T Consensus 115 ViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~--ADEpTGGtHmtLvlAG---~ygi---- 185 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYS--ADEPTGGTHMTLVLAG---NYGI---- 185 (277)
T ss_pred eecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEe--ccCCCCceeEEEEEec---ccCc----
Confidence 46777888889999998887654 4555666778887753 3457777665532211 1122
Q ss_pred hhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHH
Q 017851 193 TAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSI 272 (365)
Q Consensus 193 ~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i 272 (365)
+.+.+|++|...-- ++ |-|...-..++ ...+.+..-|
T Consensus 186 --~~EeAE~~Kr~~k~--------------------------~~------Eif~~v~PV~e---------KMAeIv~~hi 222 (277)
T COG4820 186 --SLEEAEQYKRGHKK--------------------------GE------EIFPVVKPVYE---------KMAEIVARHI 222 (277)
T ss_pred --CHhHHHHhhhcccc--------------------------ch------hcccchhHHHH---------HHHHHHHHHh
Confidence 23445555542100 00 00110001111 1456666667
Q ss_pred HhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeeh
Q 017851 273 MKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIG 332 (365)
Q Consensus 273 ~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~G 332 (365)
+..++ ..+.|+||.++.||+++-++++| ..+|+.|..|.|..=+|
T Consensus 223 e~~~i-------~dl~lvGGac~~~g~e~~Fe~~l--------~l~v~~P~~p~y~TPLg 267 (277)
T COG4820 223 EGQGI-------TDLWLVGGACMQPGVEELFEKQL--------ALQVHLPQHPLYMTPLG 267 (277)
T ss_pred ccCCC-------cceEEecccccCccHHHHHHHHh--------ccccccCCCcceechhh
Confidence 66664 34899999999999999999998 23566665555544444
No 63
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=82.60 E-value=3.7 Score=39.89 Aligned_cols=160 Identities=15% Similarity=0.234 Sum_probs=89.4
Q ss_pred CcEEEeCCCCcEEEeeeC---CC-CCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCCHHH
Q 017851 8 QPLVCDNGTGMVKAGFAG---DD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (365)
Q Consensus 8 ~~vViD~Gs~~ik~G~ag---~~-~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 83 (365)
..|=||+||.|++.=||- ++ .+...+|-+.-. .++++.= +. -...|+......|-++
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~-----------dkeViYr-------S~-I~fTPl~~~~~ID~~a 64 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIV-----------DKEVIYR-------SP-IYFTPLLSQTEIDAEA 64 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEe-----------ccEEEec-------CC-ccccCCCCCCccCHHH
Confidence 468899999999987773 22 122222322110 1111110 10 1247888777789999
Q ss_pred HHHHHHHhcccccccCCCC---CceEEecCCCCCHHhHHHHHHHhhccCCC---CceecccchhhhhhcC----------
Q 017851 84 MEKIWHHTFYNELRVAPEE---HPILLTEAPLNPKANREKMTQIMFETFNA---PAMYVAIQAVLSLYAN---------- 147 (365)
Q Consensus 84 ~~~~l~~~~~~~L~~~~~~---~~vvl~e~~~~~~~~r~~l~~~lfe~l~~---~~v~~~~~~~~a~~~~---------- 147 (365)
++++++.-| +.-++.|.+ -.|++|-... .++.-+.+.+.|-+..|= ...==--++++|..|+
T Consensus 65 l~~iv~~eY-~~Agi~p~~I~TGAVIITGETA-rKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~ 142 (473)
T PF06277_consen 65 LKEIVEEEY-RKAGITPEDIDTGAVIITGETA-RKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHH 142 (473)
T ss_pred HHHHHHHHH-HHcCCCHHHCccccEEEecchh-hhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhC
Confidence 999999987 777888764 5777775432 233333344555443331 0000011234555544
Q ss_pred ----------CceEEEEeeCCeeCCCceEEecCcHHH-----------HHHHHHHHHHhcCCCc
Q 017851 148 ----------GVSHTVPIYEGYALPHAILRLDLAGRD-----------LTDALMKILTERGYSF 190 (365)
Q Consensus 148 ----------~~t~v~pV~~g~~~~~~~~~~~~gG~~-----------l~~~l~~~l~~~~~~~ 190 (365)
|.|.++-..+|.++.. .-+++||+. +..-+++++.+.+..+
T Consensus 143 ~~V~NiDIGGGTtN~avf~~G~v~~T--~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 143 TVVANIDIGGGTTNIAVFDNGEVIDT--ACLDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred CeEEEEEeCCCceeEEEEECCEEEEE--EEEeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 5567777788888744 345777743 3455666776666543
No 64
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=79.77 E-value=0.29 Score=44.33 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhh
Q 017851 264 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 337 (365)
Q Consensus 264 l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 337 (365)
|.+.+...+++.+... ..|+++||......+.+.|++.|++..+.. .+..+..|.+.+..||.++|
T Consensus 206 la~~i~~~~~~~~~~~-----~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 206 LAELIKAVLKRLGPEK-----EPVVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHTCTCCC-----CSEEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-----CeEEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 4455555555553321 119999999988777777766666554432 33344567899999999876
No 65
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=77.75 E-value=5.2 Score=35.95 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCC---ceEEEECCCCCccceeehhhhhhcc
Q 017851 264 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS---MKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 264 l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~---~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
+.+.|.+.+..+-++.+++. |.++|-.++||-|-.-++..|+...... ..++.....-..-.+-.||+++|+-
T Consensus 257 l~e~vvK~v~tllps~~pd~---iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAna 332 (374)
T COG2441 257 LIEGVVKDVFTLLPSTYPDA---IYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANA 332 (374)
T ss_pred HHHHHHHHHHHhccccCcce---EEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhh
Confidence 45566666665544444433 9999999999998877777777544321 2333333333344567788888754
No 66
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=76.37 E-value=13 Score=36.70 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=50.0
Q ss_pred CceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC----------------CceE---EEEeeCCeeC-C
Q 017851 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN----------------GVSH---TVPIYEGYAL-P 162 (365)
Q Consensus 103 ~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~----------------~~t~---v~pV~~g~~~-~ 162 (365)
...+++.|.+.....|+ .++-+....+-.-+-.+.+|-+|+.++ |.|. +.-|.+|.-. .
T Consensus 161 ~~avvtvpAyfndsqRq-aTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQ-ATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHH-HhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 35677778887777776 445555555666666778887776555 3332 2333444322 2
Q ss_pred CceEEecCcHHHHHHHHHHHHH
Q 017851 163 HAILRLDLAGRDLTDALMKILT 184 (365)
Q Consensus 163 ~~~~~~~~gG~~l~~~l~~~l~ 184 (365)
......-.||.+++.++.+++-
T Consensus 240 sTngdtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIV 261 (640)
T ss_pred eccCccccChhHHHHHHHHHHH
Confidence 2223456799999999887765
No 67
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=65.32 E-value=4 Score=38.66 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=20.4
Q ss_pred hcccccccCccCccChHHHHHHHHHh
Q 017851 284 YGNIVLSGGSTMFPGIADRMSKEISA 309 (365)
Q Consensus 284 ~~nIvl~GG~s~i~g~~~RL~~el~~ 309 (365)
...|+||||++.-+-|.+||++.+..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 45799999999999999999988743
No 68
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=60.14 E-value=11 Score=34.35 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhh
Q 017851 264 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 337 (365)
Q Consensus 264 l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 337 (365)
|...+.+.+.-+++|. |+|.|+.+..+.|.+++++.+++.. ....+.+..+.....++-.||+.++
T Consensus 221 la~~l~~l~~~~dpe~-------IvlgG~~~~~~~~~~~i~~~l~~~~-~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 221 IARLIADLKATLDCQC-------VVLGGSVGLAEGYLELVQAYLAQEP-AIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHhCCCE-------EEEcCccccHHHHHHHHHHHHHhcc-cccCCeEEECccCCchhhhhHHHHh
Confidence 4555555556565543 8887777766677788877777642 2124455555444566777887765
No 69
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=55.71 E-value=14 Score=33.92 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhC-CCCceEEEECCCCCccceeehhhhhh
Q 017851 264 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA-PSSMKIKVVAPPERKYSVWIGGSILA 337 (365)
Q Consensus 264 l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~-~~~~~v~v~~~~~~~~~~w~Gasi~a 337 (365)
|...|.+.+.-++++. |+|-||.+..+-|.+++++.+.+.. +...++.+........+.-+||+.++
T Consensus 233 la~~l~n~~~~ldP~~-------IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 233 LAICLGNILTIVDPHL-------VVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHcCCCE-------EEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 4555556666666544 7887777776778888888887643 22223445444444555667887665
No 70
>PRK09698 D-allose kinase; Provisional
Probab=54.25 E-value=20 Score=32.76 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhCChhHHHhhhcccccccCccCccC-hHHHHHHHHHhhCC-C--CceEEEECCCCCccceeehhhhhh
Q 017851 264 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPG-IADRMSKEISALAP-S--SMKIKVVAPPERKYSVWIGGSILA 337 (365)
Q Consensus 264 l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g-~~~RL~~el~~~~~-~--~~~v~v~~~~~~~~~~w~Gasi~a 337 (365)
|...+.+.+.-++++. |+|.||.+.... |.++|.+.+++... . ...+++..+.....+.-+||..++
T Consensus 224 la~~l~~li~~ldP~~-------IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~ 294 (302)
T PRK09698 224 LARAIATSINLFDPDA-------IILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILA 294 (302)
T ss_pred HHHHHHHHHHHhCCCE-------EEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHH
Confidence 4555566665555543 788887776544 57888888887553 1 224555555444566677888765
No 71
>PRK09557 fructokinase; Reviewed
Probab=54.05 E-value=16 Score=33.47 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCC-CceEEEECCCCCccceeehhhhh
Q 017851 264 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPS-SMKIKVVAPPERKYSVWIGGSIL 336 (365)
Q Consensus 264 l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~-~~~v~v~~~~~~~~~~w~Gasi~ 336 (365)
|..++.+.+.-++++. |+|.||.+..+.|.+.|++.+++.... ..+++|..+.....+.-.||+.+
T Consensus 232 La~~l~~l~~~ldP~~-------IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~ 298 (301)
T PRK09557 232 LAKSLAHVINILDPDV-------IVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWL 298 (301)
T ss_pred HHHHHHHHHHHhCCCE-------EEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHh
Confidence 4555555565555543 888888887777888888888765432 12445554443344556677654
No 72
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=53.72 E-value=15 Score=27.19 Aligned_cols=50 Identities=20% Similarity=0.491 Sum_probs=34.8
Q ss_pred cCCccCCHHHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCC
Q 017851 74 EHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFN 130 (365)
Q Consensus 74 ~~g~i~~~~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~ 130 (365)
..|++.|+..+++.++.+. +.| |+..+.-.+.+. ...-|.+++++|+.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DRL-----DHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-HhC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 4789999999999998765 333 555555444443 2345889999998763
No 73
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=51.06 E-value=36 Score=28.70 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=18.5
Q ss_pred cccCCccCCHHHHHHHHHHhcc
Q 017851 72 PIEHGIVSNWDDMEKIWHHTFY 93 (365)
Q Consensus 72 p~~~g~i~~~~~~~~~l~~~~~ 93 (365)
-+++|.|.|.+.+.+.++.++.
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~ 57 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVE 57 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHH
Confidence 3688999999999888888873
No 74
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=44.88 E-value=41 Score=29.53 Aligned_cols=44 Identities=25% Similarity=0.365 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.|=+++| ..+++|||++....++.+.++.+++++-|.||=
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 74 DVLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 44455544454 367899999999999999999999999998875
No 75
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=44.52 E-value=14 Score=34.62 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=35.2
Q ss_pred hcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCC------CCccceeehhhhhhc
Q 017851 284 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP------ERKYSVWIGGSILAS 338 (365)
Q Consensus 284 ~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~ 338 (365)
.++++++||.+.-.-|+++|++.+... .++++.++ +..+.+|.|...+..
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~~-----~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKER-----GGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc-----CCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 467999999999988888888766541 34554443 345678888776654
No 76
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=44.44 E-value=15 Score=34.81 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=20.8
Q ss_pred cccccccCccCccChHHHHHHHH
Q 017851 285 GNIVLSGGSTMFPGIADRMSKEI 307 (365)
Q Consensus 285 ~nIvl~GG~s~i~g~~~RL~~el 307 (365)
+.|+||||++.-+-|.+||++.+
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999999877
No 77
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=43.95 E-value=41 Score=30.15 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
+.++.|=+++| ..+++|||++....++.+.++.+++++-+.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAF------TASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 45555555555 367899999999999999999999999998875
No 78
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=43.21 E-value=43 Score=30.03 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCC
Q 017851 81 WDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAP 132 (365)
Q Consensus 81 ~~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~ 132 (365)
-|.++.|=+++| ..+++|||++....++.+.++.+++++-+.||=.
T Consensus 75 ~dv~~aI~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 120 (257)
T cd08626 75 KDVIQAIKDTAF------VTSDYPVILSFENHCSKPQQYKLAKYCEEIFGDL 120 (257)
T ss_pred HHHHHHHHHHhc------ccCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHh
Confidence 355566656665 2578999999999999999999999999988753
No 79
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=42.45 E-value=43 Score=30.04 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.|=+++| ..+++|||++....++.+.++.+++++-|.||=
T Consensus 74 ~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 44555555555 367899999999999999999999999998875
No 80
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=42.41 E-value=43 Score=29.98 Aligned_cols=45 Identities=11% Similarity=0.215 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 81 WDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 81 ~~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
-|.++.|=+++| ..+++|||++....++...++.+++++-|.||=
T Consensus 73 ~~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 73 KEVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 345555555555 378899999999999999999999999998875
No 81
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=42.21 E-value=46 Score=29.69 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.|=+++| ..+++|||++....++.+.++++++++-|.||=
T Consensus 74 dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 74 DVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 44555555555 368899999999999999999999999998875
No 82
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=42.15 E-value=26 Score=31.86 Aligned_cols=68 Identities=16% Similarity=0.025 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHhCCh-hHHHhhhcccccccC-ccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhh
Q 017851 263 GIHETTYNSIMKCDV-DIRKDLYGNIVLSGG-STMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSI 335 (365)
Q Consensus 263 ~l~~~I~~~i~~~~~-d~r~~l~~nIvl~GG-~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi 335 (365)
||..+|.+.|..+-. --+..-.++|+++|| .+..|.+.+++..-+.- +..++.-+.+..+..-+||.+
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-----~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-----WSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhh-----cCceEEEECCcchHHHhhhcc
Confidence 444555555543311 113445888999999 77889999999876642 235666666667777777753
No 83
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=42.05 E-value=47 Score=29.16 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 81 WDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 81 ~~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
-|.++.+=+++| ..+++|||++....++.+.++.+++++-+.||=
T Consensus 73 ~dv~~aI~~~AF------~~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 73 RDVIETINKYAF------IKNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHHhhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 344555555555 367899999999999999999999999998875
No 84
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.65 E-value=50 Score=24.89 Aligned_cols=72 Identities=22% Similarity=0.378 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhCChhHHHhhhcccccccCccCcc--ChHHHHHHHHHhhCC-CCceEEEECCCCCccceeehhhhhhccc
Q 017851 264 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP--GIADRMSKEISALAP-SSMKIKVVAPPERKYSVWIGGSILASLS 340 (365)
Q Consensus 264 l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~--g~~~RL~~el~~~~~-~~~~v~v~~~~~~~~~~w~Gasi~a~l~ 340 (365)
+.+.|.+.|+.-|+ +++-=|+-..| ||..|..+-|...-. ...-+.|...++ .=.|=.-+|+.+
T Consensus 4 i~~~I~~~i~~n~V---------vLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~e----iR~~lk~~s~WP 70 (105)
T COG0278 4 ILDRIQKQIKENPV---------VLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPE----IRQGLKEYSNWP 70 (105)
T ss_pred HHHHHHHHhhcCce---------EEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHH----HHhccHhhcCCC
Confidence 44555666655544 66677887777 899999998887653 222355554432 111223333445
Q ss_pred cccccccc
Q 017851 341 TFQQMWIA 348 (365)
Q Consensus 341 ~~~~~~it 348 (365)
+|.++||.
T Consensus 71 T~PQLyi~ 78 (105)
T COG0278 71 TFPQLYVN 78 (105)
T ss_pred CCceeeEC
Confidence 55555553
No 85
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=41.23 E-value=46 Score=29.80 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.|=+++| ..+++|||++....++.+.++.+++++-+.||=
T Consensus 74 ~v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 44555555555 367899999999999999999999999998875
No 86
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=41.06 E-value=46 Score=29.86 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 81 WDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 81 ~~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
-|.++.|=+++| ..+++|||++....++.+.++.+++++-|.||=
T Consensus 73 ~~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 73 KDVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 345555555555 367899999999999999999999999998875
No 87
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=40.71 E-value=48 Score=29.71 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAP 132 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~ 132 (365)
+.++.|=+++| ..+++|||++....++.+.++.+++++-+.||=.
T Consensus 76 ~v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 120 (257)
T cd08591 76 DVIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFGDL 120 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 44555544555 3688999999999999999999999999988753
No 88
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=40.18 E-value=51 Score=29.03 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.+=+++| ..++.|||+.....++.+.++.+++++-+.||=
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 44555555554 367899999999999999999999999998875
No 89
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=40.14 E-value=50 Score=29.53 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.|=+++| ..+++|||++....++.+.++.+++++-+.||=
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAF------ITSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 44555555555 367899999999999999999999999998865
No 90
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=39.47 E-value=21 Score=33.27 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCCceEEE-ECCCCCccceeehhhhhhcc
Q 017851 264 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKV-VAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 264 l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v-~~~~~~~~~~w~Gasi~a~l 339 (365)
|.+-...+|+.|+ ++.+.....|++||.+.-.-+..+|.....+.-....++.. ..+.+..+.+|.|=-++-+.
T Consensus 288 i~~Kt~~ai~~~~--l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNgiMIaw~Gie~l~~~ 362 (405)
T KOG2707|consen 288 ISSKTHRAIKSLL--LQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNGIMIAWTGIEMLRNG 362 (405)
T ss_pred HHHHHHHHHHHhh--hcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcCCcchhhhhHHHHHHhcc
Confidence 3334445566665 44455556899999999888888887755443322211100 12335677889887666433
No 91
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=39.15 E-value=54 Score=29.29 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.|=+++| ..+++|||++....++.+.++.+++++-|.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 45555555555 357899999999999999999999999998875
No 92
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=39.07 E-value=24 Score=30.22 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHhCChhHHHhhhcccccccCcc-----------------CccChHHHHHHHH
Q 017851 262 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST-----------------MFPGIADRMSKEI 307 (365)
Q Consensus 262 ~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s-----------------~i~g~~~RL~~el 307 (365)
..|.+.+.+.+.....|+ |+.|||++ .+|||.+-+...-
T Consensus 52 ~~I~~aL~~a~~~~~~Dl-------IITTGGtg~g~rDvTpeAv~~l~~keipG~~e~~r~~s 107 (193)
T PRK09417 52 DLIEQTLIELVDEMGCDL-------VLTTGGTGPARRDVTPEATLAVADKEMPGFGEQMRQIS 107 (193)
T ss_pred HHHHHHHHHHhhcCCCCE-------EEECCCCCCCCCCcHHHHHHHHhCCcCCcHHHHHHHHh
Confidence 335555555553222344 88899988 4788888776543
No 93
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=38.17 E-value=56 Score=28.82 Aligned_cols=44 Identities=27% Similarity=0.358 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.|=+++| ..+++|||++....++.+.++.+++++-+.||=
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 44555555554 367899999999999999999999999998875
No 94
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=34.81 E-value=32 Score=28.99 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=33.0
Q ss_pred hhcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhcc
Q 017851 283 LYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 283 l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
-.+.|+++||.++-+-+.+.+..=+. .+|.+... .-.+-+||+++|..
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~------~~V~~~~~---~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLG------RPVVRPEV---EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHT------SEEEEESS---STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhC------CceEeCCC---CchHHHHHHHHHHh
Confidence 36779999999988777777765553 24444444 34577788887743
No 95
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=34.79 E-value=65 Score=28.97 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.|=+++| ..+++|||++....++.+.++.+++++-+.||=
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 74 SVIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 44555544554 367899999999999999999999999998875
No 96
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=34.09 E-value=72 Score=28.02 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAP 132 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~ 132 (365)
|.++.|=+++| ..++.|||+.....++.+.++.+++++-+.||-.
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (226)
T cd08558 74 DVIEAIKEYAF------VTSPYPVILSLENHCSLEQQKKMAQILKEIFGDK 118 (226)
T ss_pred HHHHHHHHHhc------ccCCCCeEEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 44555555555 2579999999999999999999999999988753
No 97
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=33.92 E-value=48 Score=30.51 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=31.8
Q ss_pred cccccCccCc-cChHHHHHHHHHhhCCC--CceEEEECCCCCccceeehhhhhh
Q 017851 287 IVLSGGSTMF-PGIADRMSKEISALAPS--SMKIKVVAPPERKYSVWIGGSILA 337 (365)
Q Consensus 287 Ivl~GG~s~i-~g~~~RL~~el~~~~~~--~~~v~v~~~~~~~~~~w~Gasi~a 337 (365)
|+|.|+.+.. +-|.+++.+.+++.... ..++.+..+.....++-+||..++
T Consensus 255 IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~ 308 (318)
T TIGR00744 255 IVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLA 308 (318)
T ss_pred EEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHH
Confidence 7777776654 46888888888764321 123455444444556777887665
No 98
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=33.58 E-value=44 Score=26.22 Aligned_cols=50 Identities=24% Similarity=0.519 Sum_probs=33.5
Q ss_pred cCCccCCHHHHHHHHHHhcccccccCCCCCceEEecCC--CCCHHhHHHHHHHhhccCC
Q 017851 74 EHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAP--LNPKANREKMTQIMFETFN 130 (365)
Q Consensus 74 ~~g~i~~~~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~--~~~~~~r~~l~~~lfe~l~ 130 (365)
..|++.|+..+++.++.++.+.| |+..+.-.++ .+| .-|.++..+++.+.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~~~~~p--T~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVNYLENP--TSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC-----CCceeccCCCCCCCC--CHHHHHHHHHHHHH
Confidence 57999999999999988773323 4455443332 233 44778888887664
No 99
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=32.86 E-value=25 Score=32.81 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=35.7
Q ss_pred hcccccccCccCccChHHHHHHHHHhhCCCCceEEEECCC------CCccceeehhhhhhcc
Q 017851 284 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP------ERKYSVWIGGSILASL 339 (365)
Q Consensus 284 ~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~l 339 (365)
.+.++++||.+.-..|+++|++..+. ..++++-++ +..+.+|.|...|.+-
T Consensus 262 ~~~lvi~GGVaaN~~LR~~l~~~~~~-----~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~g 318 (342)
T COG0533 262 KKELVIAGGVAANSRLREMLEEMCKE-----RGAEVYIPPLELCTDNAAMIAYAGLLRYKAG 318 (342)
T ss_pred CCEEEEeccHHHhHHHHHHHHHHHHh-----cCCEEEcCChHhccchHHHHHHHHHHHHHcC
Confidence 56699999999998888887766642 134554333 4567789998888753
No 100
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=31.80 E-value=82 Score=28.21 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.+=+++| ..++.|||+.....++.+.++.+++++-+.||=
T Consensus 74 dv~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAF------VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 44555555555 367899999999999999999999999988875
No 101
>PRK00976 hypothetical protein; Provisional
Probab=31.29 E-value=46 Score=30.94 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhCChhHHHhhhcccccccCccCcc--ChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhhhhhc
Q 017851 264 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP--GIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 338 (365)
Q Consensus 264 l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~--g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 338 (365)
+...|...+.-++++ .|+|.||.|..+ .+.+++++.+.. . + ......+.-+||+.++.
T Consensus 251 LA~~IAnLi~llDPe-------~IVLGGGVS~~~e~~L~~~I~e~l~~------~--~--a~LG~dAGaiGAA~iA~ 310 (326)
T PRK00976 251 VAMEIASLLLLNPED-------NVVLAGSVGEMDEPDVSERIKELLDK------K--V--LVLGKESAAIGLALIAR 310 (326)
T ss_pred HHHHHHHHHHhcCCC-------EEEEcCccccCchhHHHHHHHHHhcc------c--c--cccCCchHHHHHHHHHH
Confidence 444555555555554 399999999988 455555555432 1 1 11224667788887763
No 102
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=31.04 E-value=85 Score=28.18 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCC-CHHhHHHHHHHhhccCCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLN-PKANREKMTQIMFETFNAP 132 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~-~~~~r~~l~~~lfe~l~~~ 132 (365)
|.++.|=+++| ..+++|||+.....+ +.+.++.+++++-+.||=.
T Consensus 76 dv~~~I~~~AF------~~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd~ 121 (258)
T cd08623 76 EVIEAIAECAF------KTSPFPILLSFENHVDSPKQQAKMAEYCRLIFGDA 121 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhhh
Confidence 44555555555 368899999998888 5889999999999988753
No 103
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=30.58 E-value=38 Score=30.06 Aligned_cols=50 Identities=20% Similarity=0.469 Sum_probs=36.7
Q ss_pred cccccCc-cCccChHHHHHHHHHhhCCC-CceEEEECCCCCccceeehhhhhhcc
Q 017851 287 IVLSGGS-TMFPGIADRMSKEISALAPS-SMKIKVVAPPERKYSVWIGGSILASL 339 (365)
Q Consensus 287 Ivl~GG~-s~i~g~~~RL~~el~~~~~~-~~~v~v~~~~~~~~~~w~Gasi~a~l 339 (365)
|-+-|+. -+.|+|.+++++-|..+.+. ..+|.+.... -++=+||++.|.+
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~---dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSE---DGSGVGAAIAAAV 240 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-S---STHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEec---CchHHHHHHHHHH
Confidence 4445553 46899999999999999987 3457666663 4578899998754
No 104
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=30.04 E-value=82 Score=27.72 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCCCceEEecCCCCCHHhHHHHHHHhhccCC
Q 017851 100 PEEHPILLTEAPLNPKANREKMTQIMFETFN 130 (365)
Q Consensus 100 ~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~ 130 (365)
.+++|||+.....++.+.++.+++++-+.||
T Consensus 86 ~s~yPvILslE~hcs~~qQ~~~a~~l~~~lG 116 (228)
T cd08599 86 ASEYPVIITLENHLSPELQAKAAQILRETLG 116 (228)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999998
No 105
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=28.93 E-value=95 Score=27.92 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCC-CHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLN-PKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~-~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.|=+++| ..++.|||+.....+ +.+.++.+++++-+.||=
T Consensus 76 dv~~~I~~~AF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAF------KTSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 44555555555 258999999988877 678899999999998876
No 106
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=28.24 E-value=90 Score=28.06 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCC-CHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLN-PKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~-~~~~r~~l~~~lfe~l~~ 131 (365)
|.++.|=+++| ..+++|||+.....+ +.+.++.+++++-+.||-
T Consensus 76 dv~~~I~~~aF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAF------KTSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 44555555555 257899999988888 688999999999988876
No 107
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=28.10 E-value=94 Score=29.41 Aligned_cols=22 Identities=9% Similarity=0.216 Sum_probs=18.3
Q ss_pred cccCCccCCHHHHHHHHHHhcc
Q 017851 72 PIEHGIVSNWDDMEKIWHHTFY 93 (365)
Q Consensus 72 p~~~g~i~~~~~~~~~l~~~~~ 93 (365)
-+++|.|.|.+.+.+.++.++.
T Consensus 37 gi~~G~I~d~~~~~~~i~~al~ 58 (371)
T TIGR01174 37 GIKKGVINDIEAAVGSIQRAIE 58 (371)
T ss_pred CccCcEEEcHHHHHHHHHHHHH
Confidence 3688999999998888888874
No 108
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=27.16 E-value=99 Score=29.99 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=39.0
Q ss_pred CcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCCHHHHHHH
Q 017851 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI 87 (365)
Q Consensus 8 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~ 87 (365)
..+.||+||..+++ ..|+-.|.-.+ +.++- |. .-.+-+++|.|.|.+...+-
T Consensus 7 ~iv~LDIGTskV~~-lVge~~~~g~i-~iig~-----------------g~---------~~SrGik~G~I~di~~~~~s 58 (418)
T COG0849 7 LIVGLDIGTSKVKA-LVGELRPDGRL-NIIGV-----------------GS---------HPSRGIKKGVIVDLDAAAQS 58 (418)
T ss_pred eEEEEEccCcEEEE-EEEEEcCCCeE-EEEee-----------------ec---------ccCcccccceEEcHHHHHHH
Confidence 57899999999997 45555554211 22221 11 11355789999999999988
Q ss_pred HHHhcc
Q 017851 88 WHHTFY 93 (365)
Q Consensus 88 l~~~~~ 93 (365)
++.+..
T Consensus 59 I~~av~ 64 (418)
T COG0849 59 IKKAVE 64 (418)
T ss_pred HHHHHH
Confidence 888874
No 109
>PRK03011 butyrate kinase; Provisional
Probab=26.55 E-value=64 Score=30.57 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=31.9
Q ss_pred cccccccCccCccChHHHHHHHHHhhCCCCceEEEECCCCCccceeehhh
Q 017851 285 GNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGS 334 (365)
Q Consensus 285 ~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Gas 334 (365)
+-|||+||.+.-+-|.+++++.+..+. .+.+....+...+.-.||.
T Consensus 297 D~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 297 DAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHHHH
Confidence 449999999887778888888887664 4677766554444445543
No 110
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=25.39 E-value=2.7e+02 Score=26.29 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=20.7
Q ss_pred cccccccCccCccChHHHHHHHHHhhCCCCc
Q 017851 285 GNIVLSGGSTMFPGIADRMSKEISALAPSSM 315 (365)
Q Consensus 285 ~nIvl~GG~s~i~g~~~RL~~el~~~~~~~~ 315 (365)
.||+++||++ -.+.=|.+.|....|.+.
T Consensus 174 ~NILisGGTG---SGKTTlLNal~~~i~~~e 201 (355)
T COG4962 174 CNILISGGTG---SGKTTLLNALSGFIDSDE 201 (355)
T ss_pred eeEEEeCCCC---CCHHHHHHHHHhcCCCcc
Confidence 6999999998 345667777777666543
No 111
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=23.88 E-value=83 Score=22.94 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=15.3
Q ss_pred CcEEEeCCCCcEEEeeeC
Q 017851 8 QPLVCDNGTGMVKAGFAG 25 (365)
Q Consensus 8 ~~vViD~Gs~~ik~G~ag 25 (365)
..+-||+|...+++|+..
T Consensus 2 ~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred cEEEEccCCCeEEEEEEC
Confidence 368899999999999874
No 112
>PLN02230 phosphoinositide phospholipase C 4
Probab=22.52 E-value=1.3e+02 Score=30.59 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
+.++.|=+++| ..+++||||+....++...+..+++++-+.||=
T Consensus 187 ~v~~~I~~~aF------~~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 187 KCLDSIKANAF------AISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHHhcc------CCCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 45555555555 367899999999999999999999999998875
No 113
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=22.11 E-value=3.7e+02 Score=26.74 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=20.3
Q ss_pred CceEEEEeeCCeeCCCceEEecCcHHHHHH
Q 017851 148 GVSHTVPIYEGYALPHAILRLDLAGRDLTD 177 (365)
Q Consensus 148 ~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~ 177 (365)
|+|.++-+.+|.+. ....+++|.-.+++
T Consensus 142 GStEl~~~~~~~~~--~~~Sl~lG~vrl~e 169 (496)
T PRK11031 142 ASTELVTGTGAQAT--SLFSLSMGCVTWLE 169 (496)
T ss_pred CeeeEEEecCCcee--eeeEEeccchHHHH
Confidence 77888888777765 34678999866554
No 114
>PLN02222 phosphoinositide phospholipase C 2
Probab=21.76 E-value=1.3e+02 Score=30.42 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAP 132 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~ 132 (365)
+.++.|=+++| ..+++||||+....++...+..+++++-+.||=.
T Consensus 176 ~v~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~~ 220 (581)
T PLN02222 176 KCLKAIRAHAF------DVSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGEI 220 (581)
T ss_pred HHHHHHHHhcc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhhh
Confidence 44555544444 3678999999999999999999999999988753
No 115
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=21.72 E-value=31 Score=26.10 Aligned_cols=46 Identities=11% Similarity=0.362 Sum_probs=25.9
Q ss_pred CCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccCh
Q 017851 252 FQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 299 (365)
Q Consensus 252 F~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~ 299 (365)
++|+.++.|..-|.++|..+++..-.......-+ .++||....|||
T Consensus 57 Id~~~l~~d~e~LedlI~~A~N~A~~k~~~~~~e--~~t~gl~~~pGl 102 (102)
T TIGR00103 57 IDPSLLEEDKEALEDMITEALNDAVKKVEETYKE--LMTSGMPLPPGL 102 (102)
T ss_pred ECHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCCCCCC
Confidence 3333333344567788887776553332222222 788887654886
No 116
>PLN02952 phosphoinositide phospholipase C
Probab=21.09 E-value=1.5e+02 Score=30.24 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCC
Q 017851 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (365)
Q Consensus 82 ~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~ 131 (365)
+.++.|=+++| ..+++||||+....++...+..+++++-+.||=
T Consensus 196 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAF------SSSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 44555555555 367899999999999999999999999988875
No 117
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=20.29 E-value=49 Score=28.75 Aligned_cols=19 Identities=26% Similarity=0.618 Sum_probs=12.5
Q ss_pred cccccccCccCcc-ChHHHH
Q 017851 285 GNIVLSGGSTMFP-GIADRM 303 (365)
Q Consensus 285 ~nIvl~GG~s~i~-g~~~RL 303 (365)
+.|++|||+|-|- +|.+|+
T Consensus 6 nTiLITGG~sGIGl~lak~f 25 (245)
T COG3967 6 NTILITGGASGIGLALAKRF 25 (245)
T ss_pred cEEEEeCCcchhhHHHHHHH
Confidence 3499999999662 344444
Done!