Query 017852
Match_columns 365
No_of_seqs 161 out of 518
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:59:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 7E-74 1.5E-78 580.2 30.0 291 12-308 1-297 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 2.3E-66 5E-71 497.1 22.3 263 33-301 2-279 (280)
3 KOG0980 Actin-binding protein 100.0 1.8E-47 3.8E-52 396.7 17.0 253 32-300 4-275 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 2.3E-32 5E-37 230.5 12.1 117 35-158 1-117 (117)
5 smart00273 ENTH Epsin N-termin 100.0 1.1E-28 2.4E-33 210.7 11.0 125 33-163 1-125 (127)
6 PF01417 ENTH: ENTH domain; I 99.4 9.8E-13 2.1E-17 112.1 11.4 118 32-156 1-120 (125)
7 cd03571 ENTH_epsin ENTH domain 99.2 1.1E-10 2.4E-15 99.4 10.6 114 35-155 2-116 (123)
8 cd00197 VHS_ENTH_ANTH VHS, ENT 99.2 1.2E-10 2.6E-15 97.6 9.3 112 36-155 2-113 (115)
9 KOG2056 Equilibrative nucleosi 98.8 2.7E-08 5.9E-13 97.1 8.7 115 31-152 18-133 (336)
10 cd03572 ENTH_epsin_related ENT 98.2 8.8E-06 1.9E-10 69.2 9.4 112 38-155 5-117 (122)
11 KOG2057 Predicted equilibrativ 97.7 0.00011 2.3E-09 71.4 6.9 125 31-160 20-152 (499)
12 PF00790 VHS: VHS domain; Int 95.0 0.16 3.5E-06 43.9 8.7 79 32-113 3-81 (140)
13 cd03568 VHS_STAM VHS domain fa 94.9 0.16 3.4E-06 44.5 8.5 75 36-113 2-76 (144)
14 cd03569 VHS_Hrs_Vps27p VHS dom 94.8 0.22 4.7E-06 43.5 9.1 78 33-113 3-80 (142)
15 cd03567 VHS_GGA VHS domain fam 94.7 0.23 4.9E-06 43.3 9.0 76 35-113 2-77 (139)
16 cd03565 VHS_Tom1 VHS domain fa 94.7 0.25 5.4E-06 43.0 9.2 77 35-113 2-78 (141)
17 smart00288 VHS Domain present 94.0 0.34 7.3E-06 41.7 8.5 75 36-113 2-76 (133)
18 cd03561 VHS VHS domain family; 93.6 0.46 1E-05 40.7 8.5 75 36-113 2-76 (133)
19 KOG2199 Signal transducing ada 81.1 8.6 0.00019 39.0 8.6 78 32-112 6-83 (462)
20 KOG0414 Chromosome condensatio 69.7 1.2E+02 0.0025 35.3 14.4 172 74-276 360-574 (1251)
21 KOG1087 Cytosolic sorting prot 43.9 1.1E+02 0.0023 32.2 8.3 73 35-110 2-74 (470)
22 cd06895 PX_PLD The phosphoinos 42.4 47 0.001 28.9 4.7 23 280-302 90-121 (140)
23 PF02042 RWP-RK: RWP-RK domain 41.6 29 0.00062 25.2 2.7 33 234-275 9-41 (52)
24 PF02184 HAT: HAT (Half-A-TPR) 38.8 26 0.00055 22.9 1.8 25 247-271 4-28 (32)
25 KOG2675 Adenylate cyclase-asso 38.0 2.7E+02 0.006 28.9 9.9 21 139-159 45-65 (480)
26 KOG3520 Predicted guanine nucl 37.2 1.5E+02 0.0032 34.4 8.6 70 208-283 447-530 (1167)
27 cd07296 PX_PLD1 The phosphoino 32.0 47 0.001 28.8 3.0 49 253-302 45-116 (135)
28 PF08832 SRC-1: Steroid recept 30.2 29 0.00062 27.3 1.2 11 97-107 58-69 (78)
29 cd06878 PX_SNX25 The phosphoin 28.9 83 0.0018 26.7 4.0 45 252-302 55-108 (127)
30 cd06882 PX_p40phox The phospho 25.2 1.3E+02 0.0028 25.4 4.6 49 253-302 41-98 (123)
31 KOG1915 Cell cycle control pro 24.9 94 0.002 32.8 4.2 65 177-270 150-214 (677)
32 PF01213 CAP_N: Adenylate cycl 24.6 2.7E+02 0.0059 27.5 7.2 21 139-159 41-61 (312)
33 PF00787 PX: PX domain; Inter 21.8 2.3E+02 0.005 22.1 5.3 41 253-302 41-94 (113)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-74 Score=580.21 Aligned_cols=291 Identities=47% Similarity=0.806 Sum_probs=273.5
Q ss_pred HHHhhhcccccchhhhccCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHH
Q 017852 12 KALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVA 91 (365)
Q Consensus 12 ~~~g~lKd~~si~la~v~~~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa 91 (365)
+++|++||++|+|+|+|.+.++++++||+|||+|+++|||+|||+.|+.+|+..+ +++++|+++|.+|+++|+||+||
T Consensus 1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA 78 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA 78 (491)
T ss_pred CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence 4789999999999999998889999999999999999999999999999999874 78999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccHHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHhhhhccCCcccCCC-
Q 017852 92 LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP- 170 (365)
Q Consensus 92 ~K~LillHrlLreG~~~~~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl~~~~~~~~d~~~~~~- 170 (365)
+|+|||||+||++|+++|.+++. ++++.|+|++|.|++++.+|+|++|||+|++||++|+.+|+.+++|++..+.
T Consensus 79 lKsLIliH~ll~~G~~~f~~~l~----~~~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~ 154 (491)
T KOG0251|consen 79 LKALILIHRLLKEGDPSFEQELL----SRNLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG 154 (491)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHH----hcccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence 99999999999999999987664 2447899999999998889999999999999999999999999999875532
Q ss_pred ----CCCCCC-hHHHHhhHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 017852 171 ----RTKDLD-TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHD 245 (365)
Q Consensus 171 ----~~~~l~-~~~lL~~l~~lQ~lid~ll~c~p~~~~~~N~li~~Al~llv~Ds~~LY~~i~~gii~LLe~fFem~~~d 245 (365)
..+++. .+.+|+.++.||.||+++++|+|.+.+.+|.+|++||.+||+|||+||+++|+||+||||+||+|++.|
T Consensus 155 ~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~ 234 (491)
T KOG0251|consen 155 KEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHD 234 (491)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 455565 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccCCCCCChhhHHHHHHHHhhCCCCccc
Q 017852 246 ALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTF 308 (365)
Q Consensus 246 a~~al~iykrf~~q~~~L~~Fy~~ck~l~~~~~~~iP~L~~~P~~ll~~LEeyl~~~~~~~~~ 308 (365)
|.++|+||+||.+|+++|.+||++||++|+.++.+||+|+++|.+++++|||||++.+....+
T Consensus 235 a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~ 297 (491)
T KOG0251|consen 235 AIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAK 297 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999999999999999999999999999855444
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=2.3e-66 Score=497.05 Aligned_cols=263 Identities=45% Similarity=0.795 Sum_probs=214.5
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHH
Q 017852 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (365)
Q Consensus 33 ~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e 112 (365)
+++++||+|||+|+++|||+|||+.||.+||+ + .+++.++|+|.+|++.++||+|+||+||++|+|||+|||+|.++
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~--~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~ 78 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS-P--ESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQE 78 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST-T--S-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-C--ccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 68999999999999999999999999999998 2 57899999999999999999999999999999999999999887
Q ss_pred HHHhhhcCcCccccccccC--CCCCCCCchhHHHHHHHHHHHHHHHhhhhccCC---cccCCC---------CC-CCCCh
Q 017852 113 VINYGRSRSHMLNMAHFKD--DSSPNAWDYSAWVRSYALFLEERLECFRVLKYD---IETDRP---------RT-KDLDT 177 (365)
Q Consensus 113 ~l~~~~~r~~~l~l~~f~d--~s~~~~~~~s~~Ir~Ya~YL~~Rl~~~~~~~~d---~~~~~~---------~~-~~l~~ 177 (365)
+..+ +.+++++.++|+ ++++.+|+|+.|||+|++||++|+.||++++.+ ++.+.. .. ..+++
T Consensus 79 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (280)
T PF07651_consen 79 LLRY---NRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKIDPGNLEREEEGSLVSRDDPNSRKSLDI 155 (280)
T ss_dssp HHHT---T-----TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCCS--S-----TTSHCC-C--H
T ss_pred HHHc---ccchhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHccccccccccccccccccccCccccccccH
Confidence 7654 445667777766 566778999999999999999999999999877 543321 22 36778
Q ss_pred HHHHhhHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 017852 178 AELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAG 257 (365)
Q Consensus 178 ~~lL~~l~~lQ~lid~ll~c~p~~~~~~N~li~~Al~llv~Ds~~LY~~i~~gii~LLe~fFem~~~da~~al~iykrf~ 257 (365)
.++|++++.+|++++++++|+|.+.+++|+|+++||.+||+||++||+++|+||++|+++||+|++.||.+++++|+||.
T Consensus 156 ~~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~~rf~ 235 (280)
T PF07651_consen 156 DDLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIYKRFA 235 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccCccccCCCCCChhhHHHHHHHHhh
Q 017852 258 QQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301 (365)
Q Consensus 258 ~q~~~L~~Fy~~ck~l~~~~~~~iP~L~~~P~~ll~~LEeyl~~ 301 (365)
+|+++|++||++|+++++++++.||+|+++|++|+.+||||++|
T Consensus 236 ~q~~~L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~ 279 (280)
T PF07651_consen 236 KQTEELKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRD 279 (280)
T ss_dssp HHHHHHHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999988999999999999999999997
No 3
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=100.00 E-value=1.8e-47 Score=396.66 Aligned_cols=253 Identities=20% Similarity=0.293 Sum_probs=218.9
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHH
Q 017852 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (365)
Q Consensus 32 ~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~ 111 (365)
..++..||.|||+.+|+|||+||||+||++||++++ +.+||...+|++..++.+.+||+||++||+||||||+++.
T Consensus 4 d~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eks----a~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~ 79 (980)
T KOG0980|consen 4 DRAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKS----SKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALE 79 (980)
T ss_pred hHHHHHHHHHHhccccCCCchhhhhheeeeeccccc----chhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhH
Confidence 367889999999999999999999999999999985 4689999999999999999999999999999999999998
Q ss_pred HHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHhhhhccC---CcccCCC----------CCCCCChH
Q 017852 112 EVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKY---DIETDRP----------RTKDLDTA 178 (365)
Q Consensus 112 e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl~~~~~~~~---d~~~~~~----------~~~~l~~~ 178 (365)
+..+| ++++..++.+|++.+ .|||.+|+.|++||..|+.||.+++. .++...+ +..+++++
T Consensus 80 es~r~---r~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~FpGtle~s~~~l~~av~D~n~~feltvd 153 (980)
T KOG0980|consen 80 ESQRY---KKWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPVFPGTLEYSDYQLLTAVDDLNNGFELTVD 153 (980)
T ss_pred HHHHH---HHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCCCCCCccccHHHHHHHhccHHHHHHHHHH
Confidence 87665 778999999998643 79999999999999999999998763 3443322 33444443
Q ss_pred --HHHhhHHHHHHHHHHHhccCCCC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 017852 179 --ELLEHLPALQLLLFRVLGCQPQG-AAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRR 255 (365)
Q Consensus 179 --~lL~~l~~lQ~lid~ll~c~p~~-~~~~N~li~~Al~llv~Ds~~LY~~i~~gii~LLe~fFem~~~da~~al~iykr 255 (365)
++||.+..||+.||+.++..+.. ...+|+|+++||++||+||++||++++.|+.+|.. .++ +|+..+| ..|
T Consensus 154 mmd~~D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~vkmlfkLHs---~vp-~dtLegh--RdR 227 (980)
T KOG0980|consen 154 MMDYMDSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLVKMLFKLHS---QVP-PDTLEGH--RDR 227 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHHHHHHHHHc---CCC-HHHhhhH--HHH
Confidence 67888899999999999865543 35689999999999999999999999998777642 334 7888876 599
Q ss_pred HHHHHHHHHHHHHHhhcCCCccC-ccccCCCCCChhhHH--HHHHHHh
Q 017852 256 AGQQAERLSEFYEVCKSLDIGRG-ERFIKIEQPPASFLQ--AMEEYVK 300 (365)
Q Consensus 256 f~~q~~~L~~Fy~~ck~l~~~~~-~~iP~L~~~P~~ll~--~LEeyl~ 300 (365)
|..||++|++||+.|++++||+. ++||.||+.||||+. +|++|+.
T Consensus 228 f~~qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~ 275 (980)
T KOG0980|consen 228 FHTQFERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYIT 275 (980)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCC
Confidence 99999999999999999999988 499999999999998 7999986
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.98 E-value=2.3e-32 Score=230.53 Aligned_cols=117 Identities=44% Similarity=0.736 Sum_probs=106.3
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHHHH
Q 017852 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVI 114 (365)
Q Consensus 35 l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e~l 114 (365)
+++||.|||+|+++|||+|||+.||.+|+++. .++.+++++|.+|+.. +||+|+||+||++|+|||+|+|+|.++..
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~--~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~ 77 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSP--ASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELL 77 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 46899999999999999999999999999853 5789999999999986 99999999999999999999999987765
Q ss_pred HhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHhh
Q 017852 115 NYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 158 (365)
Q Consensus 115 ~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl~~~ 158 (365)
. +..+|++++|.+.+++.+|||+.|||.|++||++|+.||
T Consensus 78 ~----~~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 78 S----RRGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred H----ccCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 3 356899999999876678999999999999999999986
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.96 E-value=1.1e-28 Score=210.74 Aligned_cols=125 Identities=36% Similarity=0.531 Sum_probs=111.0
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHH
Q 017852 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (365)
Q Consensus 33 ~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e 112 (365)
++++++|.||||++++|||+|||+.|+.+|++++ .++.+++..|.+||..+++|+|++|+|+++|+||++|++.+..+
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~--~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~ 78 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEK--SSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILE 78 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCH--hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4689999999999999999999999999999874 57889999999999877799999999999999999999988655
Q ss_pred HHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHhhhhccC
Q 017852 113 VINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKY 163 (365)
Q Consensus 113 ~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl~~~~~~~~ 163 (365)
.. +++..+++|++|++. ++.++|+|.|||.|++||++|+.+++.++.
T Consensus 79 ~~---~~~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~ 125 (127)
T smart00273 79 AL---RNRNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRLKE 125 (127)
T ss_pred HH---HhhHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHHhc
Confidence 43 334578999999986 457899999999999999999999988764
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.44 E-value=9.8e-13 Score=112.06 Aligned_cols=118 Identities=23% Similarity=0.276 Sum_probs=91.5
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhh--ccCCChHHHHHHHHHHHHHHHhCCccc
Q 017852 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRL--SKTHNWAVALKTLIVIHRALREVDPTF 109 (365)
Q Consensus 32 ~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL--~~t~~wiVa~K~LillHrlLreG~~~~ 109 (365)
+++++.-|.+||+.++.||..+++..|...|+++ .+...++..|++|| ...++|.+++|+|.++|.|++.|++.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~---~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~ 77 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNS---KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF 77 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH
Confidence 4788999999999999999999999999999986 35677888899999 357899999999999999999999999
Q ss_pred HHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 017852 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (365)
Q Consensus 110 ~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl~ 156 (365)
..++..+. ..+-.+.+|.. .++.+.+++.-||..|+-+.+-|.
T Consensus 78 ~~~~~~~~---~~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 78 VDELRDHI---DIIRELQDFQY-VDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHHHTH---HHHHGGGG----BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH---HHHhhcceeec-cCCCCccHHHHHHHHHHHHHHHhC
Confidence 87764332 23556777765 223568889999999999877653
No 7
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=99.21 E-value=1.1e-10 Score=99.42 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=89.6
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhcc-CCChHHHHHHHHHHHHHHHhCCcccHHHH
Q 017852 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTFHEEV 113 (365)
Q Consensus 35 l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~-t~~wiVa~K~LillHrlLreG~~~~~~e~ 113 (365)
.++-|..|||.++++|..+++..|..+|++. .++..++..|.+||.. .++|.+++|+|++++.||+.|++.|..++
T Consensus 2 ~e~~vreATs~d~wGp~~~~m~eIa~~t~~~---~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~ 78 (123)
T cd03571 2 AELKVREATSNDPWGPSGTLMAEIARATYNY---VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDA 78 (123)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5678999999999999999999999999985 4677899999999974 47999999999999999999999887766
Q ss_pred HHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 017852 114 INYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (365)
Q Consensus 114 l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl 155 (365)
...+. .+-.|..|.-. ...+.+.|..||.=|+-+..-+
T Consensus 79 r~~~~---~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 79 RENLY---IIRTLKDFQYI-DENGKDQGINVREKAKEILELL 116 (123)
T ss_pred HHhHH---HHHhhccceee-CCCCCchhHHHHHHHHHHHHHh
Confidence 43322 12334555421 1234588999999888776644
No 8
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.18 E-value=1.2e-10 Score=97.56 Aligned_cols=112 Identities=25% Similarity=0.282 Sum_probs=88.8
Q ss_pred HHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 017852 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVIN 115 (365)
Q Consensus 36 ~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e~l~ 115 (365)
++.|.|||+++...|+.+++..|...+.... .....++.+|.+||. .+||.|++|+|.++|.|+..|++.|..++
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~--~~~~~~~~~l~kRl~-~~~~~~~lkaL~lLe~lvkN~g~~f~~~i-- 76 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINETN--VGPKEAVDAIKKRIN-NKNPHVVLKALTLLEYCVKNCGERFHQEV-- 76 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCCC--ccHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHccHHHHHHH--
Confidence 5789999999999999999999999997752 456889999999997 46999999999999999999999886554
Q ss_pred hhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 017852 116 YGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (365)
Q Consensus 116 ~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl 155 (365)
+++.....+-.| +.....+.+.+..||.++++|.+..
T Consensus 77 --~~~~~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 77 --ASNDFAVELLKF-DKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred --HHhHHHHHHHHh-hccccccCCCChHHHHHHHHHHHHH
Confidence 333333444444 2222334567899999999997653
No 9
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=98.75 E-value=2.7e-08 Score=97.13 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=90.8
Q ss_pred CCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhcc-CCChHHHHHHHHHHHHHHHhCCccc
Q 017852 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTF 109 (365)
Q Consensus 31 ~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~-t~~wiVa~K~LillHrlLreG~~~~ 109 (365)
++++.++.|.-||+.+...|..+++-.|-.+|++. .++.+++..|++|+.. .++|++++|+|.||-.||..|+..|
T Consensus 18 ~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~---~e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv 94 (336)
T KOG2056|consen 18 NYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNF---VEYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERV 94 (336)
T ss_pred cchHHHHHHHhccccccCCCchHHHHHHHHHhcCH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHH
Confidence 48999999999999999999999999999999986 5788999999999973 7899999999999999999999988
Q ss_pred HHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHH
Q 017852 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLE 152 (365)
Q Consensus 110 ~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~ 152 (365)
.+++...+- -|-.|..|.--. +.+.+.+..||.-++-|.
T Consensus 95 ~~~~ren~~---~I~tL~~Fq~iD-~~G~dqG~nVRkkak~l~ 133 (336)
T KOG2056|consen 95 VDETRENIY---TIETLKDFQYID-EDGKDQGLNVRKKAKELL 133 (336)
T ss_pred HHHHHhhhH---HHHHHhhceeeC-CCCccchHHHHHHHHHHH
Confidence 766532211 111233343111 235678888998888773
No 10
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=98.22 E-value=8.8e-06 Score=69.22 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=87.5
Q ss_pred HHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHHHHHhh
Q 017852 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYG 117 (365)
Q Consensus 38 AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e~l~~~ 117 (365)
.|.+||+.++.||----..+|...|+.+. ..+.+++..|.+||++ ++..|-+|+|-+|-.|++.|++.|+.++...+
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~--~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~ 81 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSV--GSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS 81 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCH--HHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH
Confidence 57899999998887777789999999853 4678899999999975 67778899999999999999999876554332
Q ss_pred hcCcCccccccccCCCCC-CCCchhHHHHHHHHHHHHHH
Q 017852 118 RSRSHMLNMAHFKDDSSP-NAWDYSAWVRSYALFLEERL 155 (365)
Q Consensus 118 ~~r~~~l~l~~f~d~s~~-~~~~~s~~Ir~Ya~YL~~Rl 155 (365)
. .+-.+.+|.....+ .+++.+..||.=|+=|..-+
T Consensus 82 ~---~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 82 A---QIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred H---HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 2 34556678764433 46888999998887766543
No 11
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=97.66 E-value=0.00011 Score=71.44 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=92.8
Q ss_pred CCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhc--cCCChHHHHHHHHHHHHHHHhCCcc
Q 017852 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLS--KTHNWAVALKTLIVIHRALREVDPT 108 (365)
Q Consensus 31 ~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~--~t~~wiVa~K~LillHrlLreG~~~ 108 (365)
+|++.+.-|+.|||-|.+.|.--.+-+|--+|.-.- -.+|.+++..|+.|+- ...+|.-++|+||++..||+.|+..
T Consensus 20 NY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry-~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER 98 (499)
T KOG2057|consen 20 NYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRY-MEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSER 98 (499)
T ss_pred cchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 589999999999999999999999999999986521 1357788999998874 3468999999999999999999999
Q ss_pred cHHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHH------HHHHhhhh
Q 017852 109 FHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLE------ERLECFRV 160 (365)
Q Consensus 109 ~~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~------~Rl~~~~~ 160 (365)
|.++...+.-. -+-|.--+|.|.. +.+.+-.||.-++-|. ++|+.-|+
T Consensus 99 ~VqeAREh~Yd-LR~LEnYhfiDEh---GKDQGINIR~kVKeilEfanDDd~Lq~ERk 152 (499)
T KOG2057|consen 99 FVQEAREHAYD-LRRLENYHFIDEH---GKDQGINIRHKVKEILEFANDDDLLQAERK 152 (499)
T ss_pred HHHHHHHHHHH-HHhhhhccchhhh---CccccccHHHHHHHHHHHhccHHHHHHHHH
Confidence 88765322111 1112222455643 4677888998888774 45555443
No 12
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=94.97 E-value=0.16 Score=43.89 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=63.5
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHH
Q 017852 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (365)
Q Consensus 32 ~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~ 111 (365)
...++..|.|||++...-|+-..+-.|........ ....+++.+|.+||. .+|..|.+-+|.++.-++..+.+.|..
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~--~~~kea~~~l~krl~-~~~~~vq~~aL~lld~lvkNcg~~f~~ 79 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSP--DGAKEAARALRKRLK-HGNPNVQLLALTLLDALVKNCGPRFHR 79 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTST--THHHHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 36788999999999988888888777777766652 455789999999997 489999999999999999999888865
Q ss_pred HH
Q 017852 112 EV 113 (365)
Q Consensus 112 e~ 113 (365)
++
T Consensus 80 ev 81 (140)
T PF00790_consen 80 EV 81 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 13
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.92 E-value=0.16 Score=44.52 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=62.8
Q ss_pred HHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHHH
Q 017852 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (365)
Q Consensus 36 ~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e~ 113 (365)
+..|-|||+....-|+--.+-.|-....... .....++.+|.+||. .+|..|++.+|.++--++..+...|..++
T Consensus 2 e~~iekATse~l~~~dw~~il~icD~I~~~~--~~~k~a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 2 DDLVEKATDEKLTSENWGLILDVCDKVKSDE--NGAKDCLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred hHHHHHHcCccCCCcCHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5689999999998888888777777665542 456889999999997 58999999999999999999888886654
No 14
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.81 E-value=0.22 Score=43.45 Aligned_cols=78 Identities=28% Similarity=0.396 Sum_probs=64.7
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHH
Q 017852 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (365)
Q Consensus 33 ~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e 112 (365)
+.++..|-|||+....-|+--.+-.|........ .....++++|.+||. .+|..|++-+|.++.-++..+...|..+
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~--~~~k~a~ral~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKD--VQPKYAMRALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 5688999999999888888888777777765542 345789999999996 5899999999999999999977777555
Q ss_pred H
Q 017852 113 V 113 (365)
Q Consensus 113 ~ 113 (365)
+
T Consensus 80 v 80 (142)
T cd03569 80 V 80 (142)
T ss_pred H
Confidence 4
No 15
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.74 E-value=0.23 Score=43.28 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHHH
Q 017852 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (365)
Q Consensus 35 l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e~ 113 (365)
++..|.|||+....-|+--.+-.|....... | .....++.+|.+|++ .+|..|++-+|.++.-++..+.+.|..++
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~-~-~~~k~a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKE-P-EGPQLAVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 6788999999999999999988888777554 3 345788999999997 68999999999999999998887776554
No 16
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=94.70 E-value=0.25 Score=43.03 Aligned_cols=77 Identities=23% Similarity=0.230 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHHH
Q 017852 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (365)
Q Consensus 35 l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e~ 113 (365)
++..|.|||+....-|+--.+-.|-...... ......++.+|.+||...+|..|++-+|.++--++..+...|..++
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~--~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINET--EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4678999999999888888887777776543 2456889999999997557899999999999999999988886554
No 17
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=94.04 E-value=0.34 Score=41.66 Aligned_cols=75 Identities=27% Similarity=0.266 Sum_probs=62.2
Q ss_pred HHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHHH
Q 017852 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (365)
Q Consensus 36 ~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e~ 113 (365)
+..|.|||+....-|+--.+-.|........ .....++.+|.+||. .+|..|++.+|.++--++..+.+.|..++
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~--~~~k~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTP--DGPKDAVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4679999999988888888877777765542 445789999999997 68999999999999999999877776554
No 18
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.61 E-value=0.46 Score=40.70 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=61.8
Q ss_pred HHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHHH
Q 017852 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (365)
Q Consensus 36 ~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e~ 113 (365)
+..|.|||+....-|+-.-+-.|........ .+..+++.+|.+||. .+|..|++-+|.++--++..+.+.|..++
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~--~~~k~a~raL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKP--NGPKEAARAIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4678999998888888888877777776552 455789999999997 57999999999999999999988776544
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=81.06 E-value=8.6 Score=39.03 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=56.1
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHH
Q 017852 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (365)
Q Consensus 32 ~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~ 111 (365)
...++..|.|||+...+.=+=.++-.+-...... | -.-..|+.+|.+||. +++.-|++-+|-++.-|.......|+.
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~-~-~~~kd~lk~i~KRln-~~dphV~L~AlTLlda~~~NCg~~~r~ 82 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSD-P-DGGKDCLKAIMKRLN-HKDPHVVLQALTLLDACVANCGKRFRL 82 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCC-C-cccHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHhcchHHHH
Confidence 4678899999999887755555554433333332 2 233789999999996 789999999999998887665545554
Q ss_pred H
Q 017852 112 E 112 (365)
Q Consensus 112 e 112 (365)
|
T Consensus 83 E 83 (462)
T KOG2199|consen 83 E 83 (462)
T ss_pred H
Confidence 4
No 20
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.70 E-value=1.2e+02 Score=35.25 Aligned_cols=172 Identities=20% Similarity=0.196 Sum_probs=96.8
Q ss_pred HHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCc--ccHHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHH
Q 017852 74 CIHALAKRLSKTHNWAVALKTLIVIHRALREVDP--TFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL 151 (365)
Q Consensus 74 ~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~--~~~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL 151 (365)
++..|..|+. +-+.-|-.|.|-++|++.+.-.- ....+++.- -.+..- |-+..||.||--|
T Consensus 360 ~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~l--------a~grl~--------DkSslVRk~Ai~L 422 (1251)
T KOG0414|consen 360 LLELLRERLL-DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLEL--------AIGRLE--------DKSSLVRKNAIQL 422 (1251)
T ss_pred HHHHHHHHhh-cccHHHHHHHHHHHHHHHHccCCCccHHHHHHHH--------Hhcccc--------cccHHHHHHHHHH
Confidence 6677888886 67889999999999999988542 222332211 111222 3357899998888
Q ss_pred HHHHHhhh----hccCCc-----cc-------CCC-----------CCCCCChHHHHhhHHHHH----HHHHHHhccCCC
Q 017852 152 EERLECFR----VLKYDI-----ET-------DRP-----------RTKDLDTAELLEHLPALQ----LLLFRVLGCQPQ 200 (365)
Q Consensus 152 ~~Rl~~~~----~~~~d~-----~~-------~~~-----------~~~~l~~~~lL~~l~~lQ----~lid~ll~c~p~ 200 (365)
...+--+. +++.+. +. +.. ..+......+++..+.-+ .+......|++.
T Consensus 423 l~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e 502 (1251)
T KOG0414|consen 423 LSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEE 502 (1251)
T ss_pred HHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchh
Confidence 77655422 122111 10 000 111111122333332222 111111222211
Q ss_pred --------CCc-cchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017852 201 --------GAA-VHNFV-IQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVC 270 (365)
Q Consensus 201 --------~~~-~~N~l-i~~Al~llv~Ds~~LY~~i~~gii~LLe~fFem~~~da~~al~iykrf~~q~~~L~~Fy~~c 270 (365)
.+. ..|++ -+-+++.-.+|.+..-+.+.+++-.+...+|.=+..|..++.+ ||-.|
T Consensus 503 ~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Id--------------fl~~c 568 (1251)
T KOG0414|consen 503 HCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAID--------------FLVRC 568 (1251)
T ss_pred hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH--------------HHHHH
Confidence 111 23333 3456777779999999999999988888888888887777664 66667
Q ss_pred hcCCCc
Q 017852 271 KSLDIG 276 (365)
Q Consensus 271 k~l~~~ 276 (365)
+..|+.
T Consensus 569 ~~F~I~ 574 (1251)
T KOG0414|consen 569 KQFGID 574 (1251)
T ss_pred HHhCCC
Confidence 776653
No 21
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.94 E-value=1.1e+02 Score=32.18 Aligned_cols=73 Identities=23% Similarity=0.244 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccH
Q 017852 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFH 110 (365)
Q Consensus 35 l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~ 110 (365)
+...|-|||+..-.-|+=-..=.|-....... ......+++|.+|++. ++-.|++=+|.+|--|+..-...|.
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~--~~~~eAvralkKRi~~-k~s~vq~lALtlLE~cvkNCG~~fh 74 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTE--GGPKEAVRALKKRLNS-KNSKVQLLALTLLETCVKNCGYSFH 74 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCc--cCcHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhhhHHHH
Confidence 45789999999887777654333333332221 1235789999999974 5557888899999887775444443
No 22
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=42.44 E-value=47 Score=28.88 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=16.8
Q ss_pred cccCCCCCC-----hhhHH----HHHHHHhhC
Q 017852 280 RFIKIEQPP-----ASFLQ----AMEEYVKEA 302 (365)
Q Consensus 280 ~iP~L~~~P-----~~ll~----~LEeyl~~~ 302 (365)
++|.||..| +.+++ .||+||++-
T Consensus 90 ~lP~lP~~~~~~~~~~~ie~Rr~~Le~YL~~L 121 (140)
T cd06895 90 RLPSLPALPDILVSEEQLDSRKKQLENYLQNL 121 (140)
T ss_pred cCCCCCCccccccCHHHHHHHHHHHHHHHHHH
Confidence 477777555 55666 799999964
No 23
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=41.64 E-value=29 Score=25.17 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=24.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017852 234 LVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDI 275 (365)
Q Consensus 234 LLe~fFem~~~da~~al~iykrf~~q~~~L~~Fy~~ck~l~~ 275 (365)
-|..||.|+..||.+.|++-....+ ..|+.+|+
T Consensus 9 ~L~~~fhlp~~eAA~~Lgv~~T~LK---------r~CR~~GI 41 (52)
T PF02042_consen 9 DLSQYFHLPIKEAAKELGVSVTTLK---------RRCRRLGI 41 (52)
T ss_pred HHHHHhCCCHHHHHHHhCCCHHHHH---------HHHHHcCC
Confidence 3678999999999998875543333 35888884
No 24
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.81 E-value=26 Score=22.89 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 017852 247 LKALDIYRRAGQQAERLSEFYEVCK 271 (365)
Q Consensus 247 ~~al~iykrf~~q~~~L~~Fy~~ck 271 (365)
.+|=.||+||...+-.+..+.+.|+
T Consensus 4 dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 4 DRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHH
Confidence 4556789999999888888888775
No 25
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=37.97 E-value=2.7e+02 Score=28.90 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHHHhhh
Q 017852 139 DYSAWVRSYALFLEERLECFR 159 (365)
Q Consensus 139 ~~s~~Ir~Ya~YL~~Rl~~~~ 159 (365)
+-.+.|+.|-.|+.+-+.-|-
T Consensus 45 ~~p~~i~Ayd~~i~~~l~~~~ 65 (480)
T KOG2675|consen 45 AVPPSIRAYDDLISEPLAEYL 65 (480)
T ss_pred cCchHHHHHHHHHHhHHHHHH
Confidence 456789999888888777654
No 26
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=37.21 E-value=1.5e+02 Score=34.43 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhcC
Q 017852 208 VIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAER--------------LSEFYEVCKSL 273 (365)
Q Consensus 208 li~~Al~llv~Ds~~LY~~i~~gii~LLe~fFem~~~da~~al~iykrf~~q~~~--------------L~~Fy~~ck~l 273 (365)
+-..+|...-+|+..+++.|-+ ||..+|+-.- |+.....|-.|+.++.. +..|+..|.+-
T Consensus 447 ~f~~~lk~rr~e~~~vI~~IGD----lLl~~FsGe~--ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~ 520 (1167)
T KOG3520|consen 447 SFLQRLKERRKESLVVIKRIGD----LLLDQFSGEN--AERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESN 520 (1167)
T ss_pred HHHHHHHHHHHhccchHHHHHH----HHHHHcCchH--HHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcc
Confidence 4456677777777777776665 4444676543 44444567777765543 44455555555
Q ss_pred CCccCccccC
Q 017852 274 DIGRGERFIK 283 (365)
Q Consensus 274 ~~~~~~~iP~ 283 (365)
-+++.+++|+
T Consensus 521 p~cRRL~lkd 530 (1167)
T KOG3520|consen 521 PVCRRLGLKD 530 (1167)
T ss_pred hHHHhhcchH
Confidence 5555555444
No 27
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=32.00 E-value=47 Score=28.84 Aligned_cols=49 Identities=10% Similarity=0.240 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC-c-------------cCccccCCCCCChhhHH---------HHHHHHhhC
Q 017852 253 YRRAGQQAERLSEFYEVCKSLDI-G-------------RGERFIKIEQPPASFLQ---------AMEEYVKEA 302 (365)
Q Consensus 253 ykrf~~q~~~L~~Fy~~ck~l~~-~-------------~~~~iP~L~~~P~~ll~---------~LEeyl~~~ 302 (365)
|+-|.+.+.+|.. |..--.+.+ . ..-++|.|+.-+.+.+. .||+||++-
T Consensus 45 y~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~~~~~~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~L 116 (135)
T cd07296 45 FKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQTIKRGEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKL 116 (135)
T ss_pred hHHHHHHHHHHHh-cCCCCCCCCCcccchhhccccccccccccccCCCCCCccccccchHHHHHHHHHHHHHH
Confidence 6778888888877 222111110 1 11247778877776443 499999964
No 28
>PF08832 SRC-1: Steroid receptor coactivator; InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=30.23 E-value=29 Score=27.28 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=8.3
Q ss_pred HHHHHHHhC-Cc
Q 017852 97 VIHRALREV-DP 107 (365)
Q Consensus 97 llHrlLreG-~~ 107 (365)
++|||||+| .|
T Consensus 58 ILHrLLQng~SP 69 (78)
T PF08832_consen 58 ILHRLLQNGNSP 69 (78)
T ss_dssp HHHHHHHCS---
T ss_pred HHHHHHhcCCCH
Confidence 589999999 44
No 29
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=28.87 E-value=83 Score=26.71 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccCccccC-----CCCCChhhHH----HHHHHHhhC
Q 017852 252 IYRRAGQQAERLSEFYEVCKSLDIGRGERFIK-----IEQPPASFLQ----AMEEYVKEA 302 (365)
Q Consensus 252 iykrf~~q~~~L~~Fy~~ck~l~~~~~~~iP~-----L~~~P~~ll~----~LEeyl~~~ 302 (365)
=|.-|...+.+|+++|...+.+ .+|. +....+.|++ .||+||+.-
T Consensus 55 RYsdF~~Lh~~Lk~~~~~~~~~------~lP~ppKk~~~~~~~~fle~Rr~~Le~YLq~l 108 (127)
T cd06878 55 KLSEFHDLHRKLKECSSWLKKV------ELPSLSKKWFKSIDKKFLDKSKNQLQKYLQFI 108 (127)
T ss_pred eHHHHHHHHHHHHHHCCCcccc------CCCCCCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 3666788889999888654322 2221 1123566766 699999863
No 30
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=25.18 E-value=1.3e+02 Score=25.35 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccCccccCCCCC-----ChhhHH----HHHHHHhhC
Q 017852 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQP-----PASFLQ----AMEEYVKEA 302 (365)
Q Consensus 253 ykrf~~q~~~L~~Fy~~ck~l~~~~~~~iP~L~~~-----P~~ll~----~LEeyl~~~ 302 (365)
|.-|.+.+.+|.+.|...++.+ .....+|.||.. ...+++ .||+||+.-
T Consensus 41 YseF~~L~~~L~~~fp~~~~~~-~~~~~lP~lP~k~~~~~~~~~~e~Rr~~Le~yl~~L 98 (123)
T cd06882 41 YRQFFALQSKLEERFGPEAGSS-AYDCTLPTLPGKIYVGRKAEIAERRIPLLNRYMKEL 98 (123)
T ss_pred HHHHHHHHHHHHHhCCcccccC-CCCCccCCCCCCeecCccHHHHHHHHHHHHHHHHHH
Confidence 5566778888888877655542 222346766641 124444 799999853
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.94 E-value=94 Score=32.83 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=38.5
Q ss_pred hHHHHhhHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 017852 177 TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRA 256 (365)
Q Consensus 177 ~~~lL~~l~~lQ~lid~ll~c~p~~~~~~N~li~~Al~llv~Ds~~LY~~i~~gii~LLe~fFem~~~da~~al~iykrf 256 (365)
.+++|..+...-++..+-+.+.|...+-...+. |++-..+-.+|=.||.||
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~-----------------------------fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK-----------------------------FELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH-----------------------------HHHHhhHHHHHHHHHHHH
Confidence 357777888888888888888876533111111 444444445555566666
Q ss_pred HHHHHHHHHHHHHh
Q 017852 257 GQQAERLSEFYEVC 270 (365)
Q Consensus 257 ~~q~~~L~~Fy~~c 270 (365)
.-.|-+++.|..++
T Consensus 201 V~~HP~v~~wikya 214 (677)
T KOG1915|consen 201 VLVHPKVSNWIKYA 214 (677)
T ss_pred heecccHHHHHHHH
Confidence 66555555555554
No 32
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=24.59 E-value=2.7e+02 Score=27.55 Aligned_cols=21 Identities=14% Similarity=0.236 Sum_probs=14.8
Q ss_pred chhHHHHHHHHHHHHHHHhhh
Q 017852 139 DYSAWVRSYALFLEERLECFR 159 (365)
Q Consensus 139 ~~s~~Ir~Ya~YL~~Rl~~~~ 159 (365)
+....|..|=.+|...+.-|-
T Consensus 41 ~~p~sV~afD~~i~~~l~~f~ 61 (312)
T PF01213_consen 41 SVPPSVEAFDELINGPLKPFV 61 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHH
Confidence 456888899888888777553
No 33
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=21.75 E-value=2.3e+02 Score=22.06 Aligned_cols=41 Identities=15% Similarity=0.359 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccCccccCCCCCC---------hhhHH----HHHHHHhhC
Q 017852 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPP---------ASFLQ----AMEEYVKEA 302 (365)
Q Consensus 253 ykrf~~q~~~L~~Fy~~ck~l~~~~~~~iP~L~~~P---------~~ll~----~LEeyl~~~ 302 (365)
|.-|...+.+|...+. ...+|.+|... +++++ .|++|++..
T Consensus 41 y~dF~~L~~~L~~~~~---------~~~~p~~P~~~~~~~~~~~~~~~~~~R~~~L~~yL~~l 94 (113)
T PF00787_consen 41 YSDFYELHRKLKKRFP---------SRKLPPFPPKQWFSNSRNLDPEFIEERRQALEKYLQSL 94 (113)
T ss_dssp HHHHHHHHHHHHHHHT---------TSGSTSSSTSSSSSSSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhc---------ccccccCCccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 5667777777877776 23455555443 34444 788888853
Done!