Query 017852
Match_columns 365
No_of_seqs 161 out of 518
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 4.2E-74 1.4E-78 555.5 30.4 277 7-301 5-298 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 2.8E-69 9.5E-74 523.6 25.8 278 8-302 11-292 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 2.3E-66 7.8E-71 494.4 24.7 256 7-278 10-269 (271)
4 1eyh_A Epsin; superhelix of he 99.6 7.6E-15 2.6E-19 126.9 11.8 119 31-156 2-121 (144)
5 1inz_A EPS15-interacting porte 99.6 1.1E-14 3.7E-19 126.5 10.8 119 31-156 20-139 (148)
6 3onk_A Epsin-3, ENT3; helix, p 99.4 2.4E-12 8.2E-17 111.8 10.5 121 28-155 5-127 (150)
7 1xgw_A Epsin 4; ENTH, enthopro 99.3 1.4E-11 5E-16 109.5 13.4 119 30-155 30-150 (176)
8 1vdy_A Hypothetical protein (R 98.6 4.2E-07 1.4E-11 77.8 11.0 116 36-156 13-129 (140)
9 1elk_A Target of MYB1; superhe 95.3 0.077 2.6E-06 45.7 9.1 79 33-113 15-93 (157)
10 3g2s_A C-terminal fragment of 95.2 0.11 3.8E-06 44.5 9.7 79 32-113 9-87 (149)
11 1juq_A ADP-ribosylation factor 95.2 0.059 2E-06 47.2 8.0 78 33-113 12-89 (171)
12 3ldz_A STAM-1, signal transduc 95.0 0.12 4E-06 43.7 9.0 78 33-113 4-81 (140)
13 3rru_A TOM1L1 protein; structu 94.8 0.13 4.3E-06 44.3 9.0 79 33-113 15-93 (152)
14 1mhq_A ADP-ribosylation factor 94.5 0.14 4.7E-06 43.8 8.3 76 35-113 2-77 (148)
15 1x5b_A Signal transducing adap 94.4 0.14 4.7E-06 44.4 8.4 78 33-113 14-91 (163)
16 3zyq_A Hepatocyte growth facto 94.4 0.17 5.7E-06 46.2 9.3 79 32-113 6-84 (226)
17 1dvp_A HRS, hepatocyte growth 93.3 0.3 1E-05 44.1 8.8 76 34-112 5-80 (220)
18 3bej_E Nuclear receptor coacti 70.7 1.9 6.6E-05 25.4 1.5 12 97-108 14-25 (26)
19 2prg_C Nuclear receptor coacti 42.0 10 0.00036 29.0 1.6 12 97-108 67-78 (88)
20 1kq6_A NCF-1, P47PHOX, neutrop 25.3 78 0.0027 25.8 4.5 50 253-303 44-102 (141)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=4.2e-74 Score=555.49 Aligned_cols=277 Identities=24% Similarity=0.434 Sum_probs=242.0
Q ss_pred hhHHHHHHhhhc-ccccchhhhccCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccC
Q 017852 7 QKSFRKALGALK-DTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKT 85 (365)
Q Consensus 7 ~~~~r~~~g~lK-d~~si~la~v~~~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t 85 (365)
+|+||+++|++| |+++ +++++||+|||+|+++|||+|||++||.+||+++ +++++++|+|.+|+ ++
T Consensus 5 ~~~~~~~~~a~k~~~~~----------~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R~-~~ 71 (299)
T 1hx8_A 5 GQTINDRLLAARHSLAG----------QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIERS-QN 71 (299)
T ss_dssp ---------------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHH-TC
T ss_pred hHHHHHHHHHHhhccch----------hHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhhc-cC
Confidence 359999999999 8877 5677899999999999999999999999999874 67899999999995 79
Q ss_pred CChHHHHHHHHHHHHHHHhCCcccHHHHHHhhhcCcCccccccccCCCC-----------CCCCchhHHHHHHHHHHHHH
Q 017852 86 HNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSS-----------PNAWDYSAWVRSYALFLEER 154 (365)
Q Consensus 86 ~~wiVa~K~LillHrlLreG~~~~~~e~l~~~~~r~~~l~l~~f~d~s~-----------~~~~~~s~~Ir~Ya~YL~~R 154 (365)
+||+|+||+||++|+|||||||+|.+++ ++++++|+|++|+|.++ +.+||||+|||+|++||++|
T Consensus 72 ~~w~va~K~LivlH~llreG~~~~~~~l----~~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r 147 (299)
T 1hx8_A 72 ANWVVVYKSLITTHHLMAYGNERFMQYL----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEK 147 (299)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCHHHHHHH----HHTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHH----HhCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999986654 44678999999999764 34678999999999999999
Q ss_pred HHhhhhccCCcccC-----CCCCCCCChHHHHhhHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 017852 155 LECFRVLKYDIETD-----RPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISD 229 (365)
Q Consensus 155 l~~~~~~~~d~~~~-----~~~~~~l~~~~lL~~l~~lQ~lid~ll~c~p~~~~~~N~li~~Al~llv~Ds~~LY~~i~~ 229 (365)
+.+|+..++|++.. ..++++|+++++|++++.||+|||++++|+|.+.+.+|+|+++||++||+||++||+++|+
T Consensus 148 ~~~f~~~~~d~~~~~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~ 227 (299)
T 1hx8_A 148 SLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYND 227 (299)
T ss_dssp HHHHHHHSSCGGGC-----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccccccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 98889988888642 2378999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccCCCCCChhhHHHHHHHHhh
Q 017852 230 GTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301 (365)
Q Consensus 230 gii~LLe~fFem~~~da~~al~iykrf~~q~~~L~~Fy~~ck~l~~~~~~~iP~L~~~P~~ll~~LEeyl~~ 301 (365)
||+||||+||+|++.||++||+||+||.+|+++|++||++|+++|+++ ++||+|+++|++|+++|||||++
T Consensus 228 gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~ 298 (299)
T 1hx8_A 228 GIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT 298 (299)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999976 89999999999999999999986
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=2.8e-69 Score=523.56 Aligned_cols=278 Identities=23% Similarity=0.433 Sum_probs=236.8
Q ss_pred hHHHHHHhhhcccccchhhhccCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCC
Q 017852 8 KSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHN 87 (365)
Q Consensus 8 ~~~r~~~g~lKd~~si~la~v~~~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~ 87 (365)
++++.-+.|.|.. |.+ +++++||+|||+|+++|||+|||++||.+||+++ .++.+++|+|.+|++ ++|
T Consensus 11 ~~~~~~~~~~~~~-------~~~--s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~--~~~~~i~~~L~~Rl~-~~~ 78 (310)
T 3zym_A 11 QSLTDRITAAQHS-------VTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSS 78 (310)
T ss_dssp -CHHHHHHHHHHC-------CHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHTT-SSC
T ss_pred ccHHHHHHHHHhc-------ccc--cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCC--CcHHHHHHHHHhhcC-CCc
Confidence 4677767766652 233 8999999999999999999999999999999874 578899999999998 899
Q ss_pred hHHHHHHHHHHHHHHHhCCcccHHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHhhhhccCCccc
Q 017852 88 WAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIET 167 (365)
Q Consensus 88 wiVa~K~LillHrlLreG~~~~~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl~~~~~~~~d~~~ 167 (365)
|+|+||+||++|+|||+|||+|.+ |+++++++|+|++|+|.+++.+|||++|||.|++||++|+.+|+..+.|++.
T Consensus 79 w~vv~KaLivlH~llreG~~~~l~----~~~~~~~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d~~~ 154 (310)
T 3zym_A 79 WVVVFKSLITTHHLMVYGNERFIQ----YLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTK 154 (310)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHH----HHHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHH----HHHhCCCeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 999999999999999999998754 5555668999999999877678999999999999999999999999988874
Q ss_pred CC----CCCCCCChHHHHhhHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 017852 168 DR----PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQR 243 (365)
Q Consensus 168 ~~----~~~~~l~~~~lL~~l~~lQ~lid~ll~c~p~~~~~~N~li~~Al~llv~Ds~~LY~~i~~gii~LLe~fFem~~ 243 (365)
.+ .++++++++++|++++.+|+|||++++|+|.+.+.+|+|+++||.+||+||++||+++|+||+||||+||+|++
T Consensus 155 ~~~~~~~~~r~~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~~ 234 (310)
T 3zym_A 155 VKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKK 234 (310)
T ss_dssp SCCSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred ccCCCCCccccCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 32 26678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccCCCCCChhhHHHHHHHHhhC
Q 017852 244 HDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEA 302 (365)
Q Consensus 244 ~da~~al~iykrf~~q~~~L~~Fy~~ck~l~~~~~~~iP~L~~~P~~ll~~LEeyl~~~ 302 (365)
.||++||+||+||.+|+++|++||++||++|+.+ .+||+|+++|+++++.++.-|.+.
T Consensus 235 ~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~-~~iP~L~~~p~d~l~~lq~~i~ev 292 (310)
T 3zym_A 235 NQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDR-GDISGSGSGHMDRVRNLQSEVEGV 292 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCCCCcccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999655 499999999999999999988764
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=2.3e-66 Score=494.36 Aligned_cols=256 Identities=25% Similarity=0.480 Sum_probs=233.2
Q ss_pred hhHHHHHHhhhcccccchhhhccCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCC
Q 017852 7 QKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTH 86 (365)
Q Consensus 7 ~~~~r~~~g~lKd~~si~la~v~~~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~ 86 (365)
+|+++.-+.+.|.. |.+ +++++||+|||+|+++|||+|||++||.+||+++ .++.+++++|.+|++ ++
T Consensus 10 ~~~~~~~~~~~~~~-------~~~--s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~--~~~~~~~~~L~~Rl~-~~ 77 (271)
T 3zyl_A 10 GQSLTDRITAAQHS-------VTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NS 77 (271)
T ss_dssp --CHHHHHHHHHHH-------HHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTT--SCHHHHHHHHHHHTT-SS
T ss_pred cccHHHHHHHHHhc-------ccc--hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCC--CcHHHHHHHHHHHhC-CC
Confidence 45777777777762 233 8999999999999999999999999999999874 578899999999998 89
Q ss_pred ChHHHHHHHHHHHHHHHhCCcccHHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHhhhhccCCcc
Q 017852 87 NWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIE 166 (365)
Q Consensus 87 ~wiVa~K~LillHrlLreG~~~~~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl~~~~~~~~d~~ 166 (365)
||+|+||+||++|+|||+|||+|.+ |+++++++|+|++|+|.+++.+|||++|||.|++||++|+.+|+..+.|++
T Consensus 78 ~w~v~~KaLivlH~llreG~~~~l~----~~~~~~~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~~ 153 (271)
T 3zyl_A 78 SWVVVFKSLITTHHLMVYGNERFIQ----YLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFT 153 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHH----HHHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHH----HHHhCCCeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999998754 455566899999999987777899999999999999999999999998887
Q ss_pred cCC----CCCCCCChHHHHhhHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017852 167 TDR----PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQ 242 (365)
Q Consensus 167 ~~~----~~~~~l~~~~lL~~l~~lQ~lid~ll~c~p~~~~~~N~li~~Al~llv~Ds~~LY~~i~~gii~LLe~fFem~ 242 (365)
..+ .++++|++++||++++.+|+|||++++|+|.+.+.+|+|+++||.+||+||++||+++|+||+||||+||+|+
T Consensus 154 ~~k~~~~~~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~ 233 (271)
T 3zyl_A 154 KVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMK 233 (271)
T ss_dssp TSCCSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred ccCCCCCCccccCCHHHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 532 2677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccC
Q 017852 243 RHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRG 278 (365)
Q Consensus 243 ~~da~~al~iykrf~~q~~~L~~Fy~~ck~l~~~~~ 278 (365)
+.||++||+||+||.+|+++|++||++||++|++++
T Consensus 234 ~~da~~aleiykrf~~Q~~~L~~Fy~~ck~~gi~~~ 269 (271)
T 3zyl_A 234 KNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG 269 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcC
Confidence 999999999999999999999999999999999875
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.59 E-value=7.6e-15 Score=126.88 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=97.7
Q ss_pred CCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhcc-CCChHHHHHHHHHHHHHHHhCCccc
Q 017852 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTF 109 (365)
Q Consensus 31 ~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~-t~~wiVa~K~LillHrlLreG~~~~ 109 (365)
++++.++.|..|||++.++|+.+++..|..+|++. .++..++..|++||.. .++|.+++|+|+|+|.||+.|++.|
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~v 78 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 78 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHH
Confidence 57899999999999999999999999999999985 5788899999999974 3699999999999999999999988
Q ss_pred HHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 017852 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (365)
Q Consensus 110 ~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl~ 156 (365)
..++...+ ..+..|..|.-.. ..+.|.|..||.+|++|.+-|.
T Consensus 79 v~~~~~~~---~~i~~L~~F~y~d-~~g~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 79 SQQCKENM---YAVQTLKDFQYVD-RDGKDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp HHHHHHTH---HHHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh---HHHhhhccceeeC-CCccchHHHHHHHHHHHHHHHC
Confidence 76654322 2356777764211 2457899999999999965443
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.57 E-value=1.1e-14 Score=126.45 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=98.3
Q ss_pred CCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhcc-CCChHHHHHHHHHHHHHHHhCCccc
Q 017852 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTF 109 (365)
Q Consensus 31 ~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~-t~~wiVa~K~LillHrlLreG~~~~ 109 (365)
++++.++.|..||+++.++|+.+++..|..+|++. .++..++..|.+||.. .++|.+++|+|+++|.||+.|++.|
T Consensus 20 ~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v 96 (148)
T 1inz_A 20 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 96 (148)
T ss_dssp SCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS---HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH
Confidence 57999999999999999999999999999999985 5788999999999974 4699999999999999999999988
Q ss_pred HHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 017852 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (365)
Q Consensus 110 ~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl~ 156 (365)
..++...+ ..+..|..|.-.. ..+.|.|..||.+|++|.+-|.
T Consensus 97 v~~~r~~~---~~I~~L~~F~y~d-~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 97 SQQCKENM---YAVQTLKDFQYVD-RDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHHHHTH---HHHHHHHHCCCCC-SSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhH---HHHHhhcceeeeC-CCCcCchHHHHHHHHHHHHHhC
Confidence 76654322 2355666653211 2457889999999999988654
No 6
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.37 E-value=2.4e-12 Score=111.83 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=94.4
Q ss_pred ccCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhcc--CCChHHHHHHHHHHHHHHHhC
Q 017852 28 VNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK--THNWAVALKTLIVIHRALREV 105 (365)
Q Consensus 28 v~~~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~--t~~wiVa~K~LillHrlLreG 105 (365)
|.-++++.++.|..||+.+.++|..+++..|..+|++. .++..++..|.+||.. .++|.+++|+|++++.||+.|
T Consensus 5 ~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 5 VDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNF---REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ---CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 44578999999999999999999999999999999985 4678899999999974 258999999999999999999
Q ss_pred CcccHHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 017852 106 DPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (365)
Q Consensus 106 ~~~~~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl 155 (365)
++.|..++..++. .+-.|..|.-.. ..+.|.|..||..|+.|.+-|
T Consensus 82 se~vv~~~r~~~~---~i~~L~~F~~~d-~~G~D~G~~VR~kak~l~~LL 127 (150)
T 3onk_A 82 SERFIDDTRNSIN---LIRILETFHYID-SQGRDQGINVRTRVKALIELL 127 (150)
T ss_dssp CHHHHHHHHTTHH---HHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---HHHhhhcccccC-CCCCchHHHHHHHHHHHHHHH
Confidence 9988666532211 122355554211 235789999999999996543
No 7
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.33 E-value=1.4e-11 Score=109.46 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=95.1
Q ss_pred CCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhh-c-cCCChHHHHHHHHHHHHHHHhCCc
Q 017852 30 SDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRL-S-KTHNWAVALKTLIVIHRALREVDP 107 (365)
Q Consensus 30 ~~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL-~-~t~~wiVa~K~LillHrlLreG~~ 107 (365)
.++++.++.|..|||.++++|..+++..|..+|++. .++..++..|++|+ . ..++|.+++|+|+|++.||+.|++
T Consensus 30 ~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~---~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse 106 (176)
T 1xgw_A 30 MNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMY---EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSE 106 (176)
T ss_dssp CCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT---TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCH
T ss_pred cCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCH
Confidence 367999999999999999999999999999999986 46889999999996 4 358999999999999999999998
Q ss_pred ccHHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 017852 108 TFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (365)
Q Consensus 108 ~~~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl 155 (365)
.|.+++...+- .+-.|..|.--. ..+.|.|..||..|+.|.+-|
T Consensus 107 ~vv~~~r~~i~---~I~~L~~F~y~D-~~G~D~G~~VR~kAk~i~~LL 150 (176)
T 1xgw_A 107 RVVTSAREHIY---DLRSLENYHFVD-EHGKDQGINIRQKVKELVEFA 150 (176)
T ss_dssp HHHHHHHHTHH---HHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHH---HHHhhccCeeEC-CCCCChHHHHHHHHHHHHHHH
Confidence 88766532221 122355563211 245789999999999996543
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.56 E-value=4.2e-07 Score=77.83 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=91.7
Q ss_pred HHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 017852 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVIN 115 (365)
Q Consensus 36 ~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e~l~ 115 (365)
...|.+||+.++.||----+.+|-..|+++. ...+.+++..|.+||. .++|.|.+|+|-+|-.|++.|++.|..++.+
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~-~~~~~eim~~L~kRL~-~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSH-VSIVKEFSEFILKRLD-NKSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHhc-CCCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 4579999999999999888999999998863 1124688999999997 4789999999999999999999999776643
Q ss_pred hhhcCcCccccccccCCCCC-CCCchhHHHHHHHHHHHHHHH
Q 017852 116 YGRSRSHMLNMAHFKDDSSP-NAWDYSAWVRSYALFLEERLE 156 (365)
Q Consensus 116 ~~~~r~~~l~l~~f~d~s~~-~~~~~s~~Ir~Ya~YL~~Rl~ 156 (365)
.+. .+-.+.+|.....+ .+++.+..||.-|+=|.+-|.
T Consensus 91 ~~~---~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 91 NSV---AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp TTH---HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred hHH---HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 322 24456677754333 468899999999998876543
No 9
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=95.31 E-value=0.077 Score=45.72 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=65.7
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHH
Q 017852 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (365)
Q Consensus 33 ~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e 112 (365)
+.++..|.|||+....-|+--.+-.|........ .....++.+|.+||...+|..|++-+|.++.-|+..+.+.|..+
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~--~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~e 92 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETE--EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL 92 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3789999999999988888888877777765542 35678999999999645789999999999999999988888655
Q ss_pred H
Q 017852 113 V 113 (365)
Q Consensus 113 ~ 113 (365)
+
T Consensus 93 v 93 (157)
T 1elk_A 93 V 93 (157)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=95.23 E-value=0.11 Score=44.49 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=67.8
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHH
Q 017852 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (365)
Q Consensus 32 ~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~ 111 (365)
.+.++..|.|||+....-|+--.+-.|........ .....++++|.+|+. .+|..|++-+|.++.-|+..+.+.|..
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~--~~pk~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDF--EGPPLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--CcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 47899999999999998899988888888776653 345789999999997 689999999999999999999988865
Q ss_pred HH
Q 017852 112 EV 113 (365)
Q Consensus 112 e~ 113 (365)
++
T Consensus 86 ei 87 (149)
T 3g2s_A 86 EV 87 (149)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 11
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=95.19 E-value=0.059 Score=47.20 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=65.8
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHH
Q 017852 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (365)
Q Consensus 33 ~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e 112 (365)
+.++..|.|||+....-|+--.+-.|........ .....++++|.+|+. .+|..|++-+|.++.-|+..+.+.|..+
T Consensus 12 s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~--~~~k~A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 12 ESLESWLNKATNPSNRQEDWEYIIGFCDQINKEL--EGPQIAVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 6788999999999988899988888887776653 345788999999996 5899999999999999999987777654
Q ss_pred H
Q 017852 113 V 113 (365)
Q Consensus 113 ~ 113 (365)
+
T Consensus 89 v 89 (171)
T 1juq_A 89 V 89 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.95 E-value=0.12 Score=43.72 Aligned_cols=78 Identities=19% Similarity=0.346 Sum_probs=65.7
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHH
Q 017852 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (365)
Q Consensus 33 ~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e 112 (365)
+.++..|.|||+....-|+--.+-.|........ .+...++.+|.+||. .+|..|++-+|.++.-++..+.+.|..+
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~--~~~k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSR--TGPKDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--cCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4578899999999998899998888888776653 346789999999996 5789999999999999999998888644
Q ss_pred H
Q 017852 113 V 113 (365)
Q Consensus 113 ~ 113 (365)
+
T Consensus 81 v 81 (140)
T 3ldz_A 81 V 81 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=94.85 E-value=0.13 Score=44.27 Aligned_cols=79 Identities=23% Similarity=0.227 Sum_probs=66.2
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHH
Q 017852 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (365)
Q Consensus 33 ~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e 112 (365)
+.++..|.|||+....-|+--.+-.|........ .....++.+|.+|+....|..|++-+|.++.-|+..+...|..+
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~--~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~e 92 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQ--DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSL 92 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6789999999999998898888877777765543 34578999999999755688888999999999999999888765
Q ss_pred H
Q 017852 113 V 113 (365)
Q Consensus 113 ~ 113 (365)
+
T Consensus 93 i 93 (152)
T 3rru_A 93 I 93 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=94.46 E-value=0.14 Score=43.77 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHHH
Q 017852 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (365)
Q Consensus 35 l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e~ 113 (365)
++..|.|||+....-|+--.+-.|........ .....++.+|.+||. .+|..|++-+|.++.-++..+.+.|..++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~--~~~k~a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDP--NGPTHAPWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 67889999999988898888888777766542 345788999999996 68999999999999999999888886554
No 15
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=94.44 E-value=0.14 Score=44.43 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=64.7
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHH
Q 017852 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (365)
Q Consensus 33 ~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e 112 (365)
..++..|.|||+....-|+--.+-.|........ .....++.+|.+||. .+|..|++-+|.++.-|+..+.+.|..+
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~--~~~keA~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTP--NGAKDCLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4578999999999988888888888777766542 346789999999996 5788999999999999999988877654
Q ss_pred H
Q 017852 113 V 113 (365)
Q Consensus 113 ~ 113 (365)
+
T Consensus 91 v 91 (163)
T 1x5b_A 91 V 91 (163)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=94.43 E-value=0.17 Score=46.16 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=66.2
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHH
Q 017852 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (365)
Q Consensus 32 ~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~ 111 (365)
.+.++..|.|||+....-|+--.+-.|-....... ......+.+|.+||. .+|..|++-+|.++.-++..+.+.|..
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~--~~~k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGD--TQAKYAVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 47899999999999998899888888877776542 345788999999997 689999999999999999998887755
Q ss_pred HH
Q 017852 112 EV 113 (365)
Q Consensus 112 e~ 113 (365)
++
T Consensus 83 ei 84 (226)
T 3zyq_A 83 EV 84 (226)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=93.33 E-value=0.3 Score=44.09 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=63.9
Q ss_pred hHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHhCCcccHHH
Q 017852 34 ELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (365)
Q Consensus 34 ~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa~K~LillHrlLreG~~~~~~e 112 (365)
.++..|.|||+....-|+-..+-.|........ ......+.+|.+||. .+|..|++-+|.++.-++..+.+.|..+
T Consensus 5 ~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~--~~~k~a~r~l~krl~-~~n~~~~l~aL~Lle~~vkNcG~~f~~e 80 (220)
T 1dvp_A 5 SFCKNLENATSHLRLEPDWPSILLICDEINQKD--VTPKNAFAAIKKKMN-SPNPHSSCYSLLVLESIVKNCGAPVHEE 80 (220)
T ss_dssp HHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCC--cCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 388999999999988899888888887776543 356789999999996 5899999999999999999987777544
No 18
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=70.66 E-value=1.9 Score=25.38 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=10.1
Q ss_pred HHHHHHHhCCcc
Q 017852 97 VIHRALREVDPT 108 (365)
Q Consensus 97 llHrlLreG~~~ 108 (365)
++||||++|.|.
T Consensus 14 ILHrLLQ~~sP~ 25 (26)
T 3bej_E 14 ILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHcCCCC
Confidence 589999999773
No 19
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=41.96 E-value=10 Score=29.04 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=10.4
Q ss_pred HHHHHHHhCCcc
Q 017852 97 VIHRALREVDPT 108 (365)
Q Consensus 97 llHrlLreG~~~ 108 (365)
++|||||+|.|.
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 589999999875
No 20
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=25.27 E-value=78 Score=25.76 Aligned_cols=50 Identities=10% Similarity=0.215 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCCccCccccCCCCCC----hhhHH----HHHHHHhhCC
Q 017852 253 YRRAGQQAERLSEFYEVCKS-LDIGRGERFIKIEQPP----ASFLQ----AMEEYVKEAP 303 (365)
Q Consensus 253 ykrf~~q~~~L~~Fy~~ck~-l~~~~~~~iP~L~~~P----~~ll~----~LEeyl~~~~ 303 (365)
|.-|...+.+|.+.|-...+ ++- ....+|.||... .++++ .||+|++.--
T Consensus 44 YsdF~~Lh~~L~~~fp~~~g~~~~-~~~~lP~lP~K~~~~~~~~~e~Rr~~Le~YL~~Ll 102 (141)
T 1kq6_A 44 FTEIYEFHKTLKEMFPIEAGAINP-ENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLM 102 (141)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSSCG-GGCCSCCCCCCCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCchhhcccCc-cccccCCCCCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 66777888888886643322 110 012456665443 45665 8999998743
Done!