BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017853
         (365 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1B9I|A Chain A, Crystal Structure Of 3-Amino-5-Hydroxybenzoic Acid (Ahba)
           Synthase
          Length = 388

 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 195 AIEGVIPLPSANPNQNHPRRKEYEEMEKQKAVIDKKADALVRRELWCGLGYFVVQTAAFM 254
           AI+GV+P      +    R   Y  M +   + +++ +ALV R +  GL  F    A + 
Sbjct: 272 AIDGVVP---QGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYR 328

Query: 255 RLTFWELS 262
              FWEL 
Sbjct: 329 TDAFWELG 336


>pdb|1B9H|A Chain A, Crystal Structure Of 3-Amino-5-Hydroxybenzoic Acid (Ahba)
           Synthase
          Length = 388

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 195 AIEGVIPLPSANPNQNHPRRKEYEEMEKQKAVIDKKADALVRRELWCGLGYFVVQTAAFM 254
           AI+GV+P      +    R   Y  M +   + +++ +ALV R +  GL  F    A + 
Sbjct: 272 AIDGVVP---QGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYR 328

Query: 255 RLTFWELS 262
              FWEL 
Sbjct: 329 TDAFWELG 336


>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
          Length = 246

 Score = 28.5 bits (62), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 189 PEQVTK-AIEGVIPLPSANPNQNHPRRKEYEEMEKQKAVIDKKADALVRR 237
           PE+  + A EG+ P+  A PN  H    + EE    +AVI +  D L +R
Sbjct: 57  PEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQR 106


>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
 pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
 pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
           Crystal)
 pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
 pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
 pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
 pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
 pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
 pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
           Peptide And Dadme-Nad+
 pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
 pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
          Length = 246

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 189 PEQVTK-AIEGVIPLPSANPNQNHPRRKEYEEMEKQKAVIDKKADALVRR 237
           PE+  + A EG+ P+  A PN  H    + EE    +AVI +  D L +R
Sbjct: 57  PEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQR 106


>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
 pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
 pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
          Length = 246

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 189 PEQVTK-AIEGVIPLPSANPNQNHPRRKEYEEMEKQKAVIDKKADALVRR 237
           PE+  + A EG+ P+  A PN  H    + EE    +AVI +  D L +R
Sbjct: 57  PEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQR 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,244,613
Number of Sequences: 62578
Number of extensions: 341456
Number of successful extensions: 592
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 6
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)