BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017853
         (365 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3UMR5|MCU_MOUSE Calcium uniporter protein, mitochondrial OS=Mus musculus GN=Mcu
           PE=2 SV=2
          Length = 350

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%)

Query: 214 RKEYEEMEKQKAVIDKKADALVRRELWCGLGYFVVQTAAFMRLTFWELSWDVMEPVCFFV 273
           +++   +EK +  I +KA+      LW GL Y   Q     RLT+WE SWD+MEPV +F+
Sbjct: 210 KQQLAPLEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSWDIMEPVTYFI 269

Query: 274 TSSSVIGSYLFFLKTAKEPTFGGFYKSRFSTKQKKLMKLHDFDGERYNQLR 324
           T  S +  Y +F+ T +E  +      ++     K  K   FD E+YNQL+
Sbjct: 270 TYGSAMAMYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQLK 320


>sp|Q8NE86|MCU_HUMAN Calcium uniporter protein, mitochondrial OS=Homo sapiens GN=MCU
           PE=1 SV=1
          Length = 351

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%)

Query: 220 MEKQKAVIDKKADALVRRELWCGLGYFVVQTAAFMRLTFWELSWDVMEPVCFFVTSSSVI 279
           +EK +  I +KA+      LW GL Y   Q     RLT+WE SWD+MEPV +F+T  S +
Sbjct: 217 LEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSWDIMEPVTYFITYGSAM 276

Query: 280 GSYLFFLKTAKEPTFGGFYKSRFSTKQKKLMKLHDFDGERYNQLR 324
             Y +F+ T +E  +      ++     K  K   FD E+YNQL+
Sbjct: 277 AMYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQLK 321


>sp|Q08BI9|MCU_DANRE Calcium uniporter protein, mitochondrial OS=Danio rerio GN=mcu PE=2
           SV=1
          Length = 376

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%)

Query: 216 EYEEMEKQKAVIDKKADALVRRELWCGLGYFVVQTAAFMRLTFWELSWDVMEPVCFFVTS 275
           + + +EK K  + KKA+      LW G+ Y   Q     RLT+WE SWD+MEPV +F+T 
Sbjct: 237 QLQPLEKVKEELSKKAERRTTWVLWGGMAYMATQFGILARLTWWEYSWDIMEPVTYFITY 296

Query: 276 SSVIGSYLFFLKTAKEPTFGGFYKSRFSTKQKKLMKLHDFDGERYNQLR 324
            + +  Y +F+ T +E  +      ++     +  K   FD E+YN+L+
Sbjct: 297 GTAMAMYAYFVLTRQEYLYPDARDRQYLLFFHRGAKRTRFDIEKYNKLK 345


>sp|Q810S1|C109B_MOUSE Coiled-coil domain-containing protein 109B OS=Mus musculus
           GN=Ccdc109b PE=2 SV=1
          Length = 345

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 59/106 (55%)

Query: 220 MEKQKAVIDKKADALVRRELWCGLGYFVVQTAAFMRLTFWELSWDVMEPVCFFVTSSSVI 279
           +E+ KA I+ +++A     LW GL    VQ  A   LT+W  SWD+MEPV FF++ ++ I
Sbjct: 211 LEQVKAAIEARSEANTSGLLWAGLALLSVQGGALAWLTWWVYSWDIMEPVTFFLSFANSI 270

Query: 280 GSYLFFLKTAKEPTFGGFYKSRFSTKQKKLMKLHDFDGERYNQLRK 325
             + +F+ T +  T+      +F     K  +   FD E+YN+L++
Sbjct: 271 VFFAYFIITRQNYTYSSLRSRQFLQFFHKKSQRRCFDVEQYNKLKE 316


>sp|Q9NWR8|C109B_HUMAN Coiled-coil domain-containing protein 109B OS=Homo sapiens
           GN=CCDC109B PE=2 SV=2
          Length = 336

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 63/112 (56%)

Query: 214 RKEYEEMEKQKAVIDKKADALVRRELWCGLGYFVVQTAAFMRLTFWELSWDVMEPVCFFV 273
           +++ + +E+ KA I+  ++A     LW GL    +Q  A   LT+W  SWD+MEPV +F+
Sbjct: 196 KEQLQPLEQVKAGIEAHSEAKTSGLLWAGLALLSIQGGALAWLTWWVYSWDIMEPVTYFI 255

Query: 274 TSSSVIGSYLFFLKTAKEPTFGGFYKSRFSTKQKKLMKLHDFDGERYNQLRK 325
           T ++ +  + +F+ T ++ T+      +F     K  K   FD ++YN+L++
Sbjct: 256 TFANSMVFFAYFIVTRQDYTYSAVKSRQFLQFFHKKSKQQHFDVQQYNKLKE 307


>sp|P11531|DMD_MOUSE Dystrophin OS=Mus musculus GN=Dmd PE=1 SV=3
          Length = 3678

 Score = 32.0 bits (71), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 103  KAAEKEKEKEKAEGLTVEEAKKVLRAV---KMEMVKDRLRMIERNWIPYSEFV 152
            KA +KE EK+KA   +V E  + L+ V   K  +V+D+L ++  NWI  +  V
Sbjct: 1617 KATQKEIEKQKAHLKSVTELGESLKMVLGKKETLVEDKLSLLNSNWIAVTSRV 1669


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,483,664
Number of Sequences: 539616
Number of extensions: 5485069
Number of successful extensions: 18992
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 18973
Number of HSP's gapped (non-prelim): 33
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)