Query 017853
Match_columns 365
No_of_seqs 153 out of 241
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2966 Uncharacterized conser 100.0 3.5E-81 7.5E-86 601.5 19.4 305 1-334 1-305 (325)
2 PF04678 DUF607: Protein of un 100.0 5.3E-53 1.2E-57 382.2 16.3 166 159-324 5-180 (180)
3 cd05026 S-100Z S-100Z: S-100Z 83.8 2.6 5.6E-05 34.4 5.2 42 117-158 29-82 (93)
4 cd05031 S-100A10_like S-100A10 82.7 2.9 6.2E-05 33.8 5.0 44 117-160 27-82 (94)
5 COG3462 Predicted membrane pro 82.2 9.8 0.00021 33.3 8.3 97 232-328 2-116 (117)
6 PF13499 EF-hand_7: EF-hand do 80.3 3.3 7.2E-05 30.5 4.3 39 117-155 17-66 (66)
7 cd05030 calgranulins Calgranul 79.3 4.7 0.0001 32.5 5.2 43 116-158 26-80 (88)
8 cd00213 S-100 S-100: S-100 dom 78.2 5.8 0.00013 31.2 5.3 42 117-158 27-80 (88)
9 PF10183 ESSS: ESSS subunit of 77.7 4.7 0.0001 34.2 4.9 45 260-305 53-97 (105)
10 cd05025 S-100A1 S-100A1: S-100 76.0 6.4 0.00014 31.5 5.1 42 117-158 28-81 (92)
11 cd05027 S-100B S-100B: S-100B 75.2 6.2 0.00013 32.1 4.8 42 117-158 27-80 (88)
12 PF13833 EF-hand_8: EF-hand do 72.9 4.7 0.0001 28.8 3.2 41 117-157 5-53 (54)
13 PTZ00183 centrin; Provisional 71.4 18 0.0004 30.3 7.1 41 117-157 34-81 (158)
14 PF14788 EF-hand_10: EF hand; 70.9 9.1 0.0002 29.1 4.4 41 117-157 2-49 (51)
15 smart00027 EH Eps15 homology d 70.5 19 0.00041 29.0 6.7 51 117-173 4-54 (96)
16 PF10995 DUF2819: Protein of u 70.1 11 0.00024 38.2 6.2 70 134-204 198-293 (316)
17 cd05022 S-100A13 S-100A13: S-1 68.8 12 0.00025 30.8 5.1 42 116-157 25-75 (89)
18 TIGR03369 cellulose_bcsE cellu 67.6 13 0.00029 37.7 6.2 84 136-220 205-321 (322)
19 cd05023 S-100A11 S-100A11: S-1 67.5 12 0.00026 30.6 4.9 42 116-157 27-80 (89)
20 cd00052 EH Eps15 homology doma 61.7 20 0.00044 25.9 4.8 20 138-157 42-61 (67)
21 PTZ00183 centrin; Provisional 60.7 43 0.00093 28.1 7.3 60 117-176 70-139 (158)
22 COG5415 Predicted integral mem 60.1 70 0.0015 31.2 9.1 36 213-248 13-55 (251)
23 cd05029 S-100A6 S-100A6: S-100 59.9 22 0.00048 28.9 5.1 41 117-157 29-79 (88)
24 PF11116 DUF2624: Protein of u 59.0 13 0.00029 31.0 3.7 30 144-173 13-44 (85)
25 PTZ00184 calmodulin; Provision 57.0 46 0.001 27.4 6.7 76 116-198 27-112 (149)
26 cd00051 EFh EF-hand, calcium b 55.5 34 0.00074 23.0 4.9 19 140-158 11-29 (63)
27 PF13812 PPR_3: Pentatricopept 52.4 25 0.00054 22.1 3.5 31 146-177 2-32 (34)
28 PF00036 EF-hand_1: EF hand; 51.6 26 0.00056 23.0 3.5 24 134-157 5-28 (29)
29 cd00052 EH Eps15 homology doma 50.8 36 0.00078 24.5 4.6 38 138-175 8-45 (67)
30 PTZ00184 calmodulin; Provision 49.5 86 0.0019 25.7 7.2 61 116-176 63-133 (149)
31 KOG0027 Calmodulin and related 46.8 80 0.0017 27.4 6.8 75 117-198 25-113 (151)
32 smart00027 EH Eps15 homology d 46.4 41 0.00089 27.0 4.7 42 117-158 27-73 (96)
33 cd00092 HTH_CRP helix_turn_hel 44.5 51 0.0011 24.0 4.6 43 144-189 24-67 (67)
34 cd00051 EFh EF-hand, calcium b 43.2 88 0.0019 20.9 5.4 40 116-155 16-62 (63)
35 PF01535 PPR: PPR repeat; Int 43.1 38 0.00082 20.6 3.2 30 146-176 1-30 (31)
36 PF10864 DUF2663: Protein of u 42.3 75 0.0016 28.5 5.9 34 217-251 3-36 (130)
37 PF13758 Prefoldin_3: Prefoldi 40.8 43 0.00094 28.7 4.0 67 129-202 12-79 (99)
38 COG5393 Predicted membrane pro 39.5 1.3E+02 0.0028 26.9 6.9 52 219-272 39-91 (131)
39 PF13937 DUF4212: Domain of un 38.8 1.4E+02 0.0031 24.5 6.7 23 260-286 41-63 (81)
40 PF07862 Nif11: Nitrogen fixat 38.8 83 0.0018 22.6 4.8 42 117-162 1-43 (49)
41 PF12535 Nudix_N: Hydrolase of 37.8 11 0.00023 29.1 -0.0 37 297-333 7-44 (58)
42 PF03979 Sigma70_r1_1: Sigma-7 37.7 68 0.0015 25.7 4.6 39 143-181 19-57 (82)
43 KOG2911 Uncharacterized conser 37.5 3E+02 0.0065 29.4 10.3 42 140-181 165-207 (439)
44 smart00419 HTH_CRP helix_turn_ 36.1 1.1E+02 0.0023 20.8 4.9 36 152-187 12-47 (48)
45 COG3800 Predicted transcriptio 35.7 2.5E+02 0.0054 28.8 9.1 119 49-176 37-178 (332)
46 TIGR00756 PPR pentatricopeptid 34.7 78 0.0017 19.3 3.7 32 146-178 1-32 (35)
47 PF14658 EF-hand_9: EF-hand do 34.4 74 0.0016 25.3 4.2 42 116-157 14-64 (66)
48 PF13041 PPR_2: PPR repeat fam 33.8 65 0.0014 22.6 3.5 34 144-178 2-35 (50)
49 PF03907 Spo7: Spo7-like prote 32.3 69 0.0015 30.8 4.4 52 236-287 28-85 (207)
50 TIGR01610 phage_O_Nterm phage 32.1 2.6E+02 0.0056 22.8 7.3 67 114-187 20-88 (95)
51 PF13833 EF-hand_8: EF-hand do 31.4 1.1E+02 0.0023 21.6 4.4 35 143-177 2-39 (54)
52 PF08006 DUF1700: Protein of u 31.4 3.9E+02 0.0084 24.0 9.1 11 189-199 53-63 (181)
53 PRK14585 pgaD putative PGA bio 31.1 92 0.002 28.2 4.7 20 233-252 19-38 (137)
54 TIGR01448 recD_rel helicase, p 31.0 4.4E+02 0.0096 29.4 11.0 88 115-202 187-300 (720)
55 PF14023 DUF4239: Protein of u 29.6 1.3E+02 0.0027 27.6 5.6 85 214-298 114-198 (209)
56 PRK09802 DNA-binding transcrip 29.1 4.6E+02 0.0099 25.4 9.6 128 123-269 11-144 (269)
57 PF11026 DUF2721: Protein of u 27.8 2.5E+02 0.0053 24.5 6.8 65 223-287 51-117 (130)
58 PF09862 DUF2089: Protein of u 27.7 35 0.00076 29.8 1.5 66 49-127 36-113 (113)
59 KOG0036 Predicted mitochondria 27.6 2.9E+02 0.0062 29.6 8.2 76 116-191 67-150 (463)
60 PF13994 PgaD: PgaD-like prote 27.0 4.3E+02 0.0093 23.1 8.4 20 231-250 16-35 (138)
61 PRK10512 selenocysteinyl-tRNA- 25.9 1.5E+02 0.0033 32.3 6.3 46 153-198 511-556 (614)
62 PF09969 DUF2203: Uncharacteri 25.8 2.1E+02 0.0046 24.9 6.0 60 117-180 3-74 (120)
63 smart00054 EFh EF-hand, calciu 25.3 1.2E+02 0.0025 17.0 3.1 21 137-157 8-28 (29)
64 PF09317 DUF1974: Domain of un 24.4 2.7E+02 0.0059 27.8 7.2 101 72-182 176-282 (284)
65 PF09889 DUF2116: Uncharacteri 24.1 98 0.0021 24.1 3.2 28 231-258 31-58 (59)
66 PF11300 DUF3102: Protein of u 24.0 2.2E+02 0.0049 25.4 5.9 38 143-180 36-74 (130)
67 PF13499 EF-hand_7: EF-hand do 24.0 2.1E+02 0.0045 20.8 4.9 27 134-160 5-31 (66)
68 PF03268 DUF267: Caenorhabditi 23.3 1.7E+02 0.0037 30.3 5.6 85 237-326 24-116 (353)
69 TIGR03327 AMP_phos AMP phospho 23.2 2.4E+02 0.0052 30.5 6.9 58 114-181 97-155 (500)
70 cd05027 S-100B S-100B: S-100B 23.0 2.5E+02 0.0055 22.7 5.6 40 137-176 16-64 (88)
71 PF10176 DUF2370: Protein of u 22.7 1.1E+02 0.0024 29.9 4.0 42 236-291 88-141 (233)
72 PF02885 Glycos_trans_3N: Glyc 22.1 2.7E+02 0.0058 21.2 5.3 51 116-176 14-65 (66)
73 PTZ00111 DNA replication licen 22.0 2.9E+02 0.0062 32.2 7.6 46 142-187 856-910 (915)
74 cd04236 AAK_NAGS-Urea AAK_NAGS 21.8 1.5E+02 0.0033 29.2 4.9 43 148-190 2-51 (271)
75 PF10820 DUF2543: Protein of u 21.6 3.2E+02 0.007 22.5 5.8 57 117-177 24-80 (81)
76 PRK12337 2-phosphoglycerate ki 21.5 2.8E+02 0.006 29.9 6.9 72 113-189 104-179 (475)
77 PF13767 DUF4168: Domain of un 21.3 1.7E+02 0.0036 23.1 4.2 36 293-329 35-70 (78)
78 PF09106 SelB-wing_2: Elongati 21.2 1.1E+02 0.0023 22.9 2.9 27 161-187 33-59 (59)
79 TIGR01004 PulS_OutS lipoprotei 21.2 1.5E+02 0.0033 26.6 4.2 46 289-334 53-99 (128)
80 PF11261 IRF-2BP1_2: Interfero 21.0 27 0.00059 26.8 -0.4 12 259-270 16-27 (54)
81 PRK04350 thymidine phosphoryla 20.9 2.8E+02 0.0062 29.9 6.9 58 114-181 91-149 (490)
82 PF12650 DUF3784: Domain of un 20.9 4.1E+02 0.009 21.5 6.5 27 222-248 32-60 (97)
83 PF12802 MarR_2: MarR family; 20.7 3.3E+02 0.0071 19.5 6.7 53 116-181 2-54 (62)
84 KOG0104 Molecular chaperones G 20.7 96 0.0021 35.4 3.5 53 129-183 316-373 (902)
85 PRK13848 conjugal transfer pro 20.6 1.6E+02 0.0034 25.3 4.0 36 211-246 6-42 (98)
86 cd01671 CARD Caspase activatio 20.2 2.9E+02 0.0064 21.0 5.3 49 125-176 8-57 (80)
87 TIGR02645 ARCH_P_rylase putati 20.2 3.2E+02 0.0069 29.6 7.1 57 115-181 97-154 (493)
No 1
>KOG2966 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=3.5e-81 Score=601.46 Aligned_cols=305 Identities=50% Similarity=0.814 Sum_probs=284.4
Q ss_pred CcchHHHHHHhhhhccccccccccccccchhhhccccCCCCCCCCCCCCCCchHHHHHhhhhhccCCCCCCCCCchhhhh
Q 017853 1 MALRKTLAERLFNITKTSRRALTNYRISSTAAAASRISQNPTRNNAPDPGDNGVFRRFLHKAAMFQPRISPVGGENLMEK 80 (365)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~g~~rrfl~~~~~~~~~~~~p~g~~l~~~ 80 (365)
||++|.|.++|||++++.+ ++.|..-+ -+++|||.|+.|||+|.+++++|+..+ .|++|+++
T Consensus 1 ma~~~~l~~~l~~~~~~~~---------------~~~~~~~~--~~~~~~~~~~~rr~~~~~~~~~~~~v~-~~g~~~~~ 62 (325)
T KOG2966|consen 1 MAMRKLLVKRLFNISRTAS---------------TRVPNDSG--QRTQPGDSTISRRFMTSSTVNSPSPVS-KGGLLMEK 62 (325)
T ss_pred CcchhhhHHHHhhhhcccc---------------ccccchhc--ccccchhhhhhhhhhhccccCCCCccc-cccchhhh
Confidence 8999999999999999985 22322222 233999999999999999999999663 39999999
Q ss_pred hhhcccccCcccccCCCCCcccchhhhhhhhhhccCCcHHHHHHHHHHHhHHHHHHHHhccCCccccHHHHHHHHHHhcC
Q 017853 81 LITIDIARDRIRLDGLSPPPTMKAAEKEKEKEKAEGLTVEEAKKVLRAVKMEMVKDRLRMIERNWIPYSEFVRVCEEACS 160 (365)
Q Consensus 81 lr~~~~~~~ri~ldgl~pp~~~~~~~~~~~~~~~~~~tv~e~rkllr~~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~~ 160 (365)
+|.++.+++|||||+++||.. +...++||+|.++++|++++|..|.+|++.|+++++|++|+..|.+.++
T Consensus 63 lrl~~~~~~~frl~~ls~~~~----------~~~~~LtveD~kkl~ra~~~e~~k~kl~~tg~~~l~y~~F~~v~~~~~~ 132 (325)
T KOG2966|consen 63 LRLPSGEKCRFRLDPLSPPVG----------EFLEDLTVEDRKKLLRAAYMEDGKKKLRETGKDWLLYSDFKLVCNDLSY 132 (325)
T ss_pred ccccCCCCceeEeccCCCCch----------hhhhhccHHHHhHHHHHHHhhHHHHHHHhcchhheeHHHHHHHHccccc
Confidence 999999999999999999952 3344799999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhcCCeEEeCceeeeChHHHHHHHHhhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017853 161 DRELGLQFAKSLDDAGNVIVLGNVVFLKPEQVTKAIEGVIPLPSANPNQNHPRRKEYEEMEKQKAVIDKKADALVRRELW 240 (365)
Q Consensus 161 ~~~eA~~~a~~Ld~SG~Vivlgd~V~LrP~~V~~~v~~~lpl~~~~~~~~d~~r~EL~~Le~~K~eID~~A~~~~rr~lw 240 (365)
++++..+.|..+|++|+|+++|+.||++|+++++.+++++|...-.. ++|++++||+||+..|++||.+|++++++++|
T Consensus 133 d~~~~k~~a~~~d~~g~v~vl~~~V~l~p~~l~~~~~~l~~~~~l~~-~~e~~keel~~Le~~K~~Id~~a~~~v~~~LW 211 (325)
T KOG2966|consen 133 DVSQPKRIAKSLDHSGNVIVLGDLVCLLPTQLTKSIEGLIPEKKLLL-PNEPRKEELAPLEAVKAEIDQKAEALVRKELW 211 (325)
T ss_pred CCCccccccccccccceeehhhhHHHhhHHHHHHHHHhhccccccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999974443 38999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhheeEEEEecccccchhHHHHHhHHHHHHHhhhhhcCCCCChhhHHHHHhhHHHHHHHHhcCCCHHHH
Q 017853 241 CGLGYFVVQTAAFMRLTFWELSWDVMEPVCFFVTSSSVIGSYLFFLKTAKEPTFGGFYKSRFSTKQKKLMKLHDFDGERY 320 (365)
Q Consensus 241 ~GL~~L~~Q~g~l~rLTfweySWDVMEPITYFvt~~t~i~gYaYFl~T~re~Sye~~~~~~~~~rq~kL~kk~gFD~~rY 320 (365)
+|||+|++|+|+|+||||||||||||||||||+|++++|+||+||++|++||||+++++++|..+|+|++++++||++||
T Consensus 212 aGLg~l~vQtg~f~RLTfWE~SWDVMEPItffvT~~~~magyayFL~Tsqepsy~~~~~r~f~~kq~Kl~k~~~FDierY 291 (325)
T KOG2966|consen 212 AGLGYLAVQTGGFARLTFWEYSWDVMEPITFFVTSTYFMAGYAYFLRTSQEPSYEGFYKRRFLTKQRKLMKKQDFDIERY 291 (325)
T ss_pred hhHHHHHHHHhHhhhhhhhhhhhhhccceeeeeehHHHHHHHHhheeeccCcccHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCC
Q 017853 321 NQLRKIFYPHYSPP 334 (365)
Q Consensus 321 ~eL~~e~~~l~~~~ 334 (365)
|+|++.+++.+++.
T Consensus 292 neLk~~~~~~~~~~ 305 (325)
T KOG2966|consen 292 NELKKLFAPAPCSL 305 (325)
T ss_pred HHHHHHHhhCcccc
Confidence 99999999999876
No 2
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=100.00 E-value=5.3e-53 Score=382.21 Aligned_cols=166 Identities=43% Similarity=0.750 Sum_probs=156.5
Q ss_pred cCChHHHHHHHHHhhhcCCeEEeCceeeeChHHHHHHHHhhCCCCCCCC----------CCCchHHHHHHHHHHHHHHHH
Q 017853 159 CSDRELGLQFAKSLDDAGNVIVLGNVVFLKPEQVTKAIEGVIPLPSANP----------NQNHPRRKEYEEMEKQKAVID 228 (365)
Q Consensus 159 ~~~~~eA~~~a~~Ld~SG~Vivlgd~V~LrP~~V~~~v~~~lpl~~~~~----------~~~d~~r~EL~~Le~~K~eID 228 (365)
..++++|.++|++|+++|+||.+++.|||+|++|.++|+.+++...... .+++++++||++|+++|.+||
T Consensus 5 ~~~~~~~~~~~~~l~~~g~vi~~~~~v~L~P~~v~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id 84 (180)
T PF04678_consen 5 IRDEDEGIEFAAALDESGVVIALSDSVYLRPKQVKEAVHRLLPLLNVEEYQNSRERQLRKRLEELRQELAPLEKIKQEID 84 (180)
T ss_pred ccchhhHHHHHHHhCCCCCEEEECCeeeECHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999864222 134688999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheeEEEEecccccchhHHHHHhHHHHHHHhhhhhcCCCCChhhHHHHHhhHHHHH
Q 017853 229 KKADALVRRELWCGLGYFVVQTAAFMRLTFWELSWDVMEPVCFFVTSSSVIGSYLFFLKTAKEPTFGGFYKSRFSTKQKK 308 (365)
Q Consensus 229 ~~A~~~~rr~lw~GL~~L~~Q~g~l~rLTfweySWDVMEPITYFvt~~t~i~gYaYFl~T~re~Sye~~~~~~~~~rq~k 308 (365)
++|++++++++|+|||+|++|+|+|+|||||+||||||||||||+|++++|+||+||++|++|++|++++++.+.++++|
T Consensus 85 ~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf~e~sWDvMEPVTYfv~~~~~i~~y~yfl~t~re~sy~~~~~~~~~~~~~k 164 (180)
T PF04678_consen 85 EKAEKRARRLLWGGLALLVVQFGILARLTFWEYSWDVMEPVTYFVGYGTSILGYAYFLYTRREYSYESVFQRRFLRRQHK 164 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHH
Q 017853 309 LMKLHDFDGERYNQLR 324 (365)
Q Consensus 309 L~kk~gFD~~rY~eL~ 324 (365)
+|+++|||+++||+|+
T Consensus 165 l~~~~~fD~~~y~~L~ 180 (180)
T PF04678_consen 165 LYAKHGFDIERYNELK 180 (180)
T ss_pred HHHHcCCCHHHHHhcC
Confidence 9999999999999985
No 3
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=83.83 E-value=2.6 Score=34.37 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHH------------hHHHHHHHHhccCCccccHHHHHHHHHHh
Q 017853 117 LTVEEAKKVLRAV------------KMEMVKDRLRMIERNWIPYSEFVRVCEEA 158 (365)
Q Consensus 117 ~tv~e~rkllr~~------------~ve~lk~~L~~~~k~~Isy~EF~~lC~e~ 158 (365)
||.+|++.+++.- .++.+-..++.++...|+|.||+.++..-
T Consensus 29 Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 29 LSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred ECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 9999999999652 37788888888999999999999999763
No 4
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=82.70 E-value=2.9 Score=33.78 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHH------------HhHHHHHHHHhccCCccccHHHHHHHHHHhcC
Q 017853 117 LTVEEAKKVLRA------------VKMEMVKDRLRMIERNWIPYSEFVRVCEEACS 160 (365)
Q Consensus 117 ~tv~e~rkllr~------------~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~~ 160 (365)
||..|++.+|+. ..++.+=..++.++...|+|+||+.+|...++
T Consensus 27 Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 27 LSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred ECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 777777777764 12444555667788899999999999987653
No 5
>COG3462 Predicted membrane protein [Function unknown]
Probab=82.19 E-value=9.8 Score=33.30 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHH--HHHH----hhheeEEEEecc----------cccchhHHHHHhHHHHHHHhhhhhcCCCCC-h
Q 017853 232 DALVRRELWCGLGYFV--VQTA----AFMRLTFWELSW----------DVMEPVCFFVTSSSVIGSYLFFLKTAKEPT-F 294 (365)
Q Consensus 232 ~~~~rr~lw~GL~~L~--~Q~g----~l~rLTfweySW----------DVMEPITYFvt~~t~i~gYaYFl~T~re~S-y 294 (365)
+|++.+++|...|+.. +-.+ +++-.+||-.+| =+.=||-.++.....++...|.+-.-+..+ +
T Consensus 2 dk~ven~~w~ligliavi~~v~li~~~~~gg~~y~~gy~gm~GG~yGm~lImpI~~~vvli~lvvfm~~~~g~~r~~~~~ 81 (117)
T COG3462 2 DKKVENFAWLLIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMMGGLYGMWLIMPIFWAVVLIFLVVFMFYILGAVRRGSDD 81 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 3567788887554442 2221 233456665444 455688888887766665555554333333 4
Q ss_pred hhHHH-HHhhHHHHHHHHhcCCCHHHHHHHHHhhc
Q 017853 295 GGFYK-SRFSTKQKKLMKLHDFDGERYNQLRKIFY 328 (365)
Q Consensus 295 e~~~~-~~~~~rq~kL~kk~gFD~~rY~eL~~e~~ 328 (365)
.++-+ .+...-.+.-|++-..+-+.|+...++++
T Consensus 82 d~~e~~sRA~eIlkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 82 DDAERGSRAEEILKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred cccccccHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 45444 55556666778999999999999988775
No 6
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=80.25 E-value=3.3 Score=30.54 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHHh-----------HHHHHHHHhccCCccccHHHHHHHH
Q 017853 117 LTVEEAKKVLRAVK-----------MEMVKDRLRMIERNWIPYSEFVRVC 155 (365)
Q Consensus 117 ~tv~e~rkllr~~~-----------ve~lk~~L~~~~k~~Isy~EF~~lC 155 (365)
||.+|++++++..+ ++.+=...+.++...|+++||+.+|
T Consensus 17 i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 17 ISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp EEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 66667777666654 1222445566777788888887765
No 7
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=79.28 E-value=4.7 Score=32.53 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=32.7
Q ss_pred CCcHHHHHHHHHH------------HhHHHHHHHHhccCCccccHHHHHHHHHHh
Q 017853 116 GLTVEEAKKVLRA------------VKMEMVKDRLRMIERNWIPYSEFVRVCEEA 158 (365)
Q Consensus 116 ~~tv~e~rkllr~------------~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~ 158 (365)
.||.+|++.+++. ..+..+=..++.++...|+|.||+.++...
T Consensus 26 ~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 26 TLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred cCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5999999999963 234444445566788899999999999864
No 8
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=78.19 E-value=5.8 Score=31.24 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHH------------HhHHHHHHHHhccCCccccHHHHHHHHHHh
Q 017853 117 LTVEEAKKVLRA------------VKMEMVKDRLRMIERNWIPYSEFVRVCEEA 158 (365)
Q Consensus 117 ~tv~e~rkllr~------------~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~ 158 (365)
+|.+|++++++. ..++.+-..++.++...|+|++|+.+|...
T Consensus 27 Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 27 LSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 777777777753 223444445566778899999999999764
No 9
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=77.72 E-value=4.7 Score=34.22 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=31.5
Q ss_pred EecccccchhHHHHHhHHHHHHHhhhhhcCCCCChhhHHHHHhhHH
Q 017853 260 ELSWDVMEPVCFFVTSSSVIGSYLFFLKTAKEPTFGGFYKSRFSTK 305 (365)
Q Consensus 260 eySWDVMEPITYFvt~~t~i~gYaYFl~T~re~Sye~~~~~~~~~r 305 (365)
..+|.-||.++||.-+++++++. .++.++-|.+.+++-++-...+
T Consensus 53 ~~d~e~we~~~f~~~~~~~v~~~-~~~~y~PD~~i~~WA~rEA~~r 97 (105)
T PF10183_consen 53 KRDWEGWELPFFFGFSGSLVFGG-VFLAYKPDTSIQTWARREAYRR 97 (105)
T ss_pred cchHhhhHHHHHHHHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHH
Confidence 57899999998775544444444 4455578999988877765544
No 10
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=76.02 E-value=6.4 Score=31.53 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHH-H-----------hHHHHHHHHhccCCccccHHHHHHHHHHh
Q 017853 117 LTVEEAKKVLRA-V-----------KMEMVKDRLRMIERNWIPYSEFVRVCEEA 158 (365)
Q Consensus 117 ~tv~e~rkllr~-~-----------~ve~lk~~L~~~~k~~Isy~EF~~lC~e~ 158 (365)
|+.+|++.+|+. . .++.+=..++.++...|+|+||+.++...
T Consensus 28 Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 28 LSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred ECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 888999999875 2 24445555667788899999999998763
No 11
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=75.24 E-value=6.2 Score=32.11 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHH-----Hh-------HHHHHHHHhccCCccccHHHHHHHHHHh
Q 017853 117 LTVEEAKKVLRA-----VK-------MEMVKDRLRMIERNWIPYSEFVRVCEEA 158 (365)
Q Consensus 117 ~tv~e~rkllr~-----~~-------ve~lk~~L~~~~k~~Isy~EF~~lC~e~ 158 (365)
|+..|++.+|+. .+ |+.+-..++.++...|.|.||+.++...
T Consensus 27 I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 27 LKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred ECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 788888888887 33 6666667788899999999999998764
No 12
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=72.86 E-value=4.7 Score=28.83 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHHHh--------HHHHHHHHhccCCccccHHHHHHHHHH
Q 017853 117 LTVEEAKKVLRAVK--------MEMVKDRLRMIERNWIPYSEFVRVCEE 157 (365)
Q Consensus 117 ~tv~e~rkllr~~~--------ve~lk~~L~~~~k~~Isy~EF~~lC~e 157 (365)
||.+|++..|+..+ +..+=...+.++...|+|.||+.+-+.
T Consensus 5 i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 5 ITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 55566666554322 334555667889999999999887653
No 13
>PTZ00183 centrin; Provisional
Probab=71.44 E-value=18 Score=30.33 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHh-------HHHHHHHHhccCCccccHHHHHHHHHH
Q 017853 117 LTVEEAKKVLRAVK-------MEMVKDRLRMIERNWIPYSEFVRVCEE 157 (365)
Q Consensus 117 ~tv~e~rkllr~~~-------ve~lk~~L~~~~k~~Isy~EF~~lC~e 157 (365)
||.+|++.+++..+ +..+-..++.++...|+|.||+.++..
T Consensus 34 i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 34 IDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 66666666666443 344444555667777777777776654
No 14
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=70.90 E-value=9.1 Score=29.05 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHHhHHH-------HHHHHhccCCccccHHHHHHHHHH
Q 017853 117 LTVEEAKKVLRAVKMEM-------VKDRLRMIERNWIPYSEFVRVCEE 157 (365)
Q Consensus 117 ~tv~e~rkllr~~~ve~-------lk~~L~~~~k~~Isy~EF~~lC~e 157 (365)
||..|++++||..||+. |=++-+......+-.+||.++|..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 78899999999999987 445557777888999999998864
No 15
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=70.54 E-value=19 Score=29.01 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHhccCCccccHHHHHHHHHHhcCChHHHHHHHHHhh
Q 017853 117 LTVEEAKKVLRAVKMEMVKDRLRMIERNWIPYSEFVRVCEEACSDRELGLQFAKSLD 173 (365)
Q Consensus 117 ~tv~e~rkllr~~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld 173 (365)
+|.++...+.+.- ..++.++...|+++|+.++....+.+.++..++.+..+
T Consensus 4 ls~~~~~~l~~~F------~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d 54 (96)
T smart00027 4 ISPEDKAKYEQIF------RSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLAD 54 (96)
T ss_pred CCHHHHHHHHHHH------HHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 4555555444433 34666777788888888887777777777776666655
No 16
>PF10995 DUF2819: Protein of unknown function (DUF2819); InterPro: IPR017745 This protein, called BcsE (bacterial cellulose synthase E) or YhjS, is required for cellulose biosynthesis in Salmonella enteritidis. Its role is this process across multiple bacterial species is implied by the partial phylogenetic profiling algorithm []. The protein is encoded in the vicinity of other cellulose biosynthesis genes and has been [] suggested to act as a protease.
Probab=70.09 E-value=11 Score=38.16 Aligned_cols=70 Identities=17% Similarity=0.386 Sum_probs=56.2
Q ss_pred HHHHHhccCCccccHHHHHHHHHHh--------------------cCChHHHHHHHHHhhhcCCeEEe-Cceeee-----
Q 017853 134 VKDRLRMIERNWIPYSEFVRVCEEA--------------------CSDRELGLQFAKSLDDAGNVIVL-GNVVFL----- 187 (365)
Q Consensus 134 lk~~L~~~~k~~Isy~EF~~lC~e~--------------------~~~~~eA~~~a~~Ld~SG~Vivl-gd~V~L----- 187 (365)
|+.-+-..-|.-++..+|++.|.+. |++++++.+.. .+.+.|-|+.+ +|.+||
T Consensus 198 L~~~~p~~~kGYl~~~~F~~~v~~~~~~s~~~~~~~~Lv~L~~lPgl~~~~~L~lC-~~rR~GDv~T~~~~~lYLFL~aC 276 (316)
T PF10995_consen 198 LKALQPLQLKGYLPPAAFCEYVRDLLDNSLLPEVKGVLVKLRPLPGLSAEQALRLC-HIRRDGDVVTADDNRLYLFLSAC 276 (316)
T ss_pred HHhcCCcCccCCCCHHHHHHHHHHHHhccccccCceEEEEecCCCCCCHHHHHhhC-CcccCccEEEecCCEEEEEEEec
Confidence 3444455778899999999999984 24788888876 57789999888 667777
Q ss_pred ChHHHHHHHHhhCCCCC
Q 017853 188 KPEQVTKAIEGVIPLPS 204 (365)
Q Consensus 188 rP~~V~~~v~~~lpl~~ 204 (365)
|++++-.++..+.++|.
T Consensus 277 R~nDld~AL~~IF~lPv 293 (316)
T PF10995_consen 277 RINDLDTALNNIFRLPV 293 (316)
T ss_pred chhhHHHHHHHhcCCCH
Confidence 99999999999999974
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=68.84 E-value=12 Score=30.83 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=30.9
Q ss_pred CCcHHHHHHHHHH-H--------hHHHHHHHHhccCCccccHHHHHHHHHH
Q 017853 116 GLTVEEAKKVLRA-V--------KMEMVKDRLRMIERNWIPYSEFVRVCEE 157 (365)
Q Consensus 116 ~~tv~e~rkllr~-~--------~ve~lk~~L~~~~k~~Isy~EF~~lC~e 157 (365)
-|+.+|+|.+|+. . .++.+=..++.++...|+|.||+.+...
T Consensus 25 ~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 25 SLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred eECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3788888888776 2 2344445567789999999999988765
No 18
>TIGR03369 cellulose_bcsE cellulose biosynthesis protein BcsE. This protein, called BcsE (bacterial cellulose synthase E) or YhjS, is required for cellulose biosynthesis in Salmonella enteritidis. Its role is this process across multiple bacterial species is implied by the partial phylogenetic profiling algorithm. Members are found in the vicinity of other cellulose biosynthesis genes. The model does not include a much less well-conserved N-terminal region about 150 amino acids in length for most members. Solano, et al. suggest this protein acts as a protease.
Probab=67.57 E-value=13 Score=37.70 Aligned_cols=84 Identities=17% Similarity=0.326 Sum_probs=62.0
Q ss_pred HHHhccCCccccHHHHHHHHHHh--------------------cCChHHHHHHHHHhhhcCCeEEe-Cceeee-----Ch
Q 017853 136 DRLRMIERNWIPYSEFVRVCEEA--------------------CSDRELGLQFAKSLDDAGNVIVL-GNVVFL-----KP 189 (365)
Q Consensus 136 ~~L~~~~k~~Isy~EF~~lC~e~--------------------~~~~~eA~~~a~~Ld~SG~Vivl-gd~V~L-----rP 189 (365)
.-+...-|.-++..+|+++|.+. |+++++|.+.. .+...|-|+.+ +|.+|| |+
T Consensus 205 ~~~~~~~kGYlp~~~F~~~v~~~~~~~~~~~~~~~LvkL~~lPgi~~~qaL~lC-~~rR~GDv~T~~~~~LylFL~aCR~ 283 (322)
T TIGR03369 205 AVLPTAAKGYLPPDTFCSYVRKVLERSLVLQLSGVLVKLRLLPGIRHADALRLC-HIRRAGDLCTAGNNSLYLFLFACRL 283 (322)
T ss_pred hccCccccCcCCHHHHHHHHHHHHhcchhhcCCceEEEeccCCCCCHHHHHhhc-CcCcCCCEEEeeCCeEEEEEeeccc
Confidence 33445778899999999999984 24778888766 57789999988 555655 99
Q ss_pred HHHHHHHHhhCCCCCCCC-------CCCchHHHHHHHH
Q 017853 190 EQVTKAIEGVIPLPSANP-------NQNHPRRKEYEEM 220 (365)
Q Consensus 190 ~~V~~~v~~~lpl~~~~~-------~~~d~~r~EL~~L 220 (365)
+++-.++..+.++|.... .++..+..||+.|
T Consensus 284 nDld~AL~~IF~lPv~dlF~~~~v~~~~~~I~~El~~l 321 (322)
T TIGR03369 284 NDVDIALNHIFKLPVSDLFSSRTVCSDNGSILAELKQL 321 (322)
T ss_pred ccHHHHHHHhcCCChHHhhccceEeccchHHHHHHHhc
Confidence 999999999999975222 1344566666654
No 19
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=67.48 E-value=12 Score=30.58 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHHH------------hHHHHHHHHhccCCccccHHHHHHHHHH
Q 017853 116 GLTVEEAKKVLRAV------------KMEMVKDRLRMIERNWIPYSEFVRVCEE 157 (365)
Q Consensus 116 ~~tv~e~rkllr~~------------~ve~lk~~L~~~~k~~Isy~EF~~lC~e 157 (365)
.||.+|++.++..- .++.+=..++.++...|+|.||+.+...
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 49999999998764 4677777888899999999999988754
No 20
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=61.68 E-value=20 Score=25.90 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=14.8
Q ss_pred HhccCCccccHHHHHHHHHH
Q 017853 138 LRMIERNWIPYSEFVRVCEE 157 (365)
Q Consensus 138 L~~~~k~~Isy~EF~~lC~e 157 (365)
++.++...|++.||+.++..
T Consensus 42 ~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 42 ADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hcCCCCCcCCHHHHHHHHHH
Confidence 34556677999999888764
No 21
>PTZ00183 centrin; Provisional
Probab=60.71 E-value=43 Score=28.07 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHHH--------hHHHHHHHHhccCCccccHHHHHHHHHHhc--CChHHHHHHHHHhhhcC
Q 017853 117 LTVEEAKKVLRAV--------KMEMVKDRLRMIERNWIPYSEFVRVCEEAC--SDRELGLQFAKSLDDAG 176 (365)
Q Consensus 117 ~tv~e~rkllr~~--------~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~--~~~~eA~~~a~~Ld~SG 176 (365)
++.+|+..++... .++.+=..++.++...|++.||..+|...+ .+.+++..+...++..+
T Consensus 70 i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~ 139 (158)
T PTZ00183 70 IDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNG 139 (158)
T ss_pred EeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC
Confidence 6777776665432 243444456788889999999999999876 68888888888887544
No 22
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=60.14 E-value=70 Score=31.20 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 017853 213 RRKEYEEMEKQKAVIDKKADA-------LVRRELWCGLGYFVV 248 (365)
Q Consensus 213 ~r~EL~~Le~~K~eID~~A~~-------~~rr~lw~GL~~L~~ 248 (365)
.+.+|..||.+-.+.|..+.+ --.|+..++||+.+.
T Consensus 13 ~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l 55 (251)
T COG5415 13 YTADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVL 55 (251)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555555555555544322 224666666766544
No 23
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=59.90 E-value=22 Score=28.87 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=30.0
Q ss_pred CcHHHHHHHHHH----------HhHHHHHHHHhccCCccccHHHHHHHHHH
Q 017853 117 LTVEEAKKVLRA----------VKMEMVKDRLRMIERNWIPYSEFVRVCEE 157 (365)
Q Consensus 117 ~tv~e~rkllr~----------~~ve~lk~~L~~~~k~~Isy~EF~~lC~e 157 (365)
++.+|++++|+. ..++.+=..++.++...|+|+||+.+-..
T Consensus 29 Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 29 LSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred ECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 777777777752 12555666678888999999999887754
No 24
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=58.99 E-value=13 Score=30.96 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=26.5
Q ss_pred ccccHHHHHHHHHHhc--CChHHHHHHHHHhh
Q 017853 144 NWIPYSEFVRVCEEAC--SDRELGLQFAKSLD 173 (365)
Q Consensus 144 ~~Isy~EF~~lC~e~~--~~~~eA~~~a~~Ld 173 (365)
..||-+||+++|.+.+ +++++|..++..|.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr 44 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILR 44 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 4699999999999987 58899999998876
No 25
>PTZ00184 calmodulin; Provisional
Probab=57.04 E-value=46 Score=27.36 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=44.8
Q ss_pred CCcHHHHHHHHHHHh-------HHHHHHHHhccCCccccHHHHHHHHHHhc---CChHHHHHHHHHhhhcCCeEEeCcee
Q 017853 116 GLTVEEAKKVLRAVK-------MEMVKDRLRMIERNWIPYSEFVRVCEEAC---SDRELGLQFAKSLDDAGNVIVLGNVV 185 (365)
Q Consensus 116 ~~tv~e~rkllr~~~-------ve~lk~~L~~~~k~~Isy~EF~~lC~e~~---~~~~eA~~~a~~Ld~SG~Vivlgd~V 185 (365)
.+|.+|++.++...+ +..+-..++..+...|+|.+|+.++.... ...+....+-+.+|..|. =
T Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~-------g 99 (149)
T PTZ00184 27 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGN-------G 99 (149)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCC-------C
Confidence 377777777765433 44555556667778899999998887542 223344444455553332 2
Q ss_pred eeChHHHHHHHHh
Q 017853 186 FLKPEQVTKAIEG 198 (365)
Q Consensus 186 ~LrP~~V~~~v~~ 198 (365)
++.++++...+..
T Consensus 100 ~i~~~e~~~~l~~ 112 (149)
T PTZ00184 100 FISAAELRHVMTN 112 (149)
T ss_pred eEeHHHHHHHHHH
Confidence 3556666655554
No 26
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=55.53 E-value=34 Score=22.98 Aligned_cols=19 Identities=11% Similarity=-0.078 Sum_probs=8.2
Q ss_pred ccCCccccHHHHHHHHHHh
Q 017853 140 MIERNWIPYSEFVRVCEEA 158 (365)
Q Consensus 140 ~~~k~~Isy~EF~~lC~e~ 158 (365)
.++...|+++||..++...
T Consensus 11 ~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 11 KDGDGTISADELKAALKSL 29 (63)
T ss_pred CCCCCcCcHHHHHHHHHHh
Confidence 3334444444444444443
No 27
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=52.45 E-value=25 Score=22.06 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 017853 146 IPYSEFVRVCEEACSDRELGLQFAKSLDDAGN 177 (365)
Q Consensus 146 Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~ 177 (365)
.+|+-.++.|...| +.+.|..+.+.+.+.|+
T Consensus 2 ~ty~~ll~a~~~~g-~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 2 HTYNALLRACAKAG-DPDAALQLFDEMKEQGV 32 (34)
T ss_pred cHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC
Confidence 57899999999977 48899999999998884
No 28
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=51.65 E-value=26 Score=23.03 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=20.3
Q ss_pred HHHHHhccCCccccHHHHHHHHHH
Q 017853 134 VKDRLRMIERNWIPYSEFVRVCEE 157 (365)
Q Consensus 134 lk~~L~~~~k~~Isy~EF~~lC~e 157 (365)
+=...+.++...|+++||.++|++
T Consensus 5 ~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 5 AFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHh
Confidence 345678899999999999999975
No 29
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=50.80 E-value=36 Score=24.52 Aligned_cols=38 Identities=16% Similarity=-0.054 Sum_probs=31.6
Q ss_pred HhccCCccccHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 017853 138 LRMIERNWIPYSEFVRVCEEACSDRELGLQFAKSLDDA 175 (365)
Q Consensus 138 L~~~~k~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~S 175 (365)
++.++...|+.+|+..+....|.+.+++.++.+.++..
T Consensus 8 ~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~ 45 (67)
T cd00052 8 LDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTD 45 (67)
T ss_pred hCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 67778889999999999888888888888888887754
No 30
>PTZ00184 calmodulin; Provisional
Probab=49.46 E-value=86 Score=25.71 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=42.2
Q ss_pred CCcHHHHHHHHHHH--------hHHHHHHHHhccCCccccHHHHHHHHHHhc--CChHHHHHHHHHhhhcC
Q 017853 116 GLTVEEAKKVLRAV--------KMEMVKDRLRMIERNWIPYSEFVRVCEEAC--SDRELGLQFAKSLDDAG 176 (365)
Q Consensus 116 ~~tv~e~rkllr~~--------~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~--~~~~eA~~~a~~Ld~SG 176 (365)
.++.+|+...+... .+..+=...+.++...|+..||.++|...| .+.+++..+.+.++..|
T Consensus 63 ~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 133 (149)
T PTZ00184 63 TIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 133 (149)
T ss_pred cCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCC
Confidence 48888888776642 122222344567888999999999998875 46677777777776544
No 31
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=46.80 E-value=80 Score=27.40 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHHHh-------HHHHHHHHhccCCccccHHHHHHHHHHhcCC-------hHHHHHHHHHhhhcCCeEEeC
Q 017853 117 LTVEEAKKVLRAVK-------MEMVKDRLRMIERNWIPYSEFVRVCEEACSD-------RELGLQFAKSLDDAGNVIVLG 182 (365)
Q Consensus 117 ~tv~e~rkllr~~~-------ve~lk~~L~~~~k~~Isy~EF~~lC~e~~~~-------~~eA~~~a~~Ld~SG~Vivlg 182 (365)
++..|++.++|..+ +..+-..++.++...|.+.||+.+|...... .++-.+.-+.+|..|.
T Consensus 25 i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~----- 99 (151)
T KOG0027|consen 25 ISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGD----- 99 (151)
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCC-----
Confidence 67777777777543 4446667777889999999999999986531 2245555555664433
Q ss_pred ceeeeChHHHHHHHHh
Q 017853 183 NVVFLKPEQVTKAIEG 198 (365)
Q Consensus 183 d~V~LrP~~V~~~v~~ 198 (365)
=|+.+.++...+..
T Consensus 100 --G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 100 --GFISASELKKVLTS 113 (151)
T ss_pred --CcCcHHHHHHHHHH
Confidence 35555555544443
No 32
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=46.37 E-value=41 Score=27.04 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHHhH-----HHHHHHHhccCCccccHHHHHHHHHHh
Q 017853 117 LTVEEAKKVLRAVKM-----EMVKDRLRMIERNWIPYSEFVRVCEEA 158 (365)
Q Consensus 117 ~tv~e~rkllr~~~v-----e~lk~~L~~~~k~~Isy~EF~~lC~e~ 158 (365)
+|.+|++++++..++ +.+-...+.+....|+|+||+.++...
T Consensus 27 Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 27 VTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred EeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 555555555544322 122223455677889999999998763
No 33
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=44.55 E-value=51 Score=24.00 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=32.3
Q ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCeEEeC-ceeeeCh
Q 017853 144 NWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGNVIVLG-NVVFLKP 189 (365)
Q Consensus 144 ~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~Vivlg-d~V~LrP 189 (365)
..+|..| ++...|.++..+.+.++.|.+.|.|..-+ +.+.+.|
T Consensus 24 ~~~s~~e---la~~~g~s~~tv~r~l~~L~~~g~i~~~~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQE---IADYLGLTRETVSRTLKELEEEGLISRRGRGKYRVNP 67 (67)
T ss_pred CCcCHHH---HHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeEEeCC
Confidence 3455444 55556888999999999999999998877 6666654
No 34
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=43.18 E-value=88 Score=20.88 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHHh-------HHHHHHHHhccCCccccHHHHHHHH
Q 017853 116 GLTVEEAKKVLRAVK-------MEMVKDRLRMIERNWIPYSEFVRVC 155 (365)
Q Consensus 116 ~~tv~e~rkllr~~~-------ve~lk~~L~~~~k~~Isy~EF~~lC 155 (365)
.++.+|++.+++..+ +..+-.+++.++...|++.+|..+.
T Consensus 16 ~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 16 TISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 489999999998763 4445556666677889999998753
No 35
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=43.07 E-value=38 Score=20.64 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 017853 146 IPYSEFVRVCEEACSDRELGLQFAKSLDDAG 176 (365)
Q Consensus 146 Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG 176 (365)
++|+-+++.|...|. .++|.++.+.+.+.|
T Consensus 1 v~y~~li~~~~~~~~-~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQ-FEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccch-HHHHHHHHHHHhHCc
Confidence 578899999988875 789999999888877
No 36
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=42.34 E-value=75 Score=28.50 Aligned_cols=34 Identities=12% Similarity=-0.032 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017853 217 YEEMEKQKAVIDKKADALVRRELWCGLGYFVVQTA 251 (365)
Q Consensus 217 L~~Le~~K~eID~~A~~~~rr~lw~GL~~L~~Q~g 251 (365)
|+.+-+.|++-|+.+ ++..+..|++|+.+++-+.
T Consensus 3 L~~lI~rK~K~e~l~-k~~~~~~~~~l~~~~~~~~ 36 (130)
T PF10864_consen 3 LQALIKRKEKWERLK-KQHLFWQWLFLFSLFLFFI 36 (130)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 566777788887755 6777888888777665443
No 37
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=40.83 E-value=43 Score=28.71 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=44.1
Q ss_pred HhHHHHHHHHhccCC-ccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCeEEeCceeeeChHHHHHHHHhhCCC
Q 017853 129 VKMEMVKDRLRMIER-NWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGNVIVLGNVVFLKPEQVTKAIEGVIPL 202 (365)
Q Consensus 129 ~~ve~lk~~L~~~~k-~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~Vivlgd~V~LrP~~V~~~v~~~lpl 202 (365)
+.-+.||..+...++ ..-+.++|.+++.+-+.+--...++=..|.+ ++.+-=-|+||++.|.+.++.
T Consensus 12 aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~-------~~~i~Rt~~Qvv~~l~RRiDY 79 (99)
T PF13758_consen 12 AEYEGLKEEIEALPEDDDATREDLLRIRRDFGGSLVTEKEIKEILGE-------GQGITRTREQVVDVLSRRIDY 79 (99)
T ss_pred HHHHHHHHHHHhccccCCCCHHHHHHHHHhcCcccccHHHHHHHhCC-------CCCCCcCHHHHHHHHHHHHHH
Confidence 456789999988876 6678899999999876432222222223332 223334678999999986665
No 38
>COG5393 Predicted membrane protein [Function unknown]
Probab=39.50 E-value=1.3e+02 Score=26.90 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEEEE-ecccccchhHHH
Q 017853 219 EMEKQKAVIDKKADALVRRELWCGLGYFVVQTAAFMRLTFWE-LSWDVMEPVCFF 272 (365)
Q Consensus 219 ~Le~~K~eID~~A~~~~rr~lw~GL~~L~~Q~g~l~rLTfwe-ySWDVMEPITYF 272 (365)
+||++|+..=+.+--.--.++.++|++|+.-.. .-+-||+ |-|+-|=-.|..
T Consensus 39 ELeEeKanll~lllm~gLtl~fa~~~lmsL~vL--vi~~f~~tyRl~a~~a~~~v 91 (131)
T COG5393 39 ELEEEKANLLQLLLMAGLTLLFAAFGLMSLMVL--VIWAFDPTYRLNAMIATTAV 91 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCcHHHHHHHHHHHHH
Confidence 355666655544433333344444444433222 2357885 999877655543
No 39
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=38.79 E-value=1.4e+02 Score=24.49 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=18.0
Q ss_pred EecccccchhHHHHHhHHHHHHHhhhh
Q 017853 260 ELSWDVMEPVCFFVTSSSVIGSYLFFL 286 (365)
Q Consensus 260 eySWDVMEPITYFvt~~t~i~gYaYFl 286 (365)
-++| |..|+++.-++++.|.--+
T Consensus 41 ~~Gf----Plgfw~aaQGsi~~fviLi 63 (81)
T PF13937_consen 41 FGGF----PLGFWFAAQGSIIVFVILI 63 (81)
T ss_pred eCCC----ChHHHHHHHhHHHHHHHHH
Confidence 4566 9999999999887776544
No 40
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=38.78 E-value=83 Score=22.60 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHHHhH-HHHHHHHhccCCccccHHHHHHHHHHhcCCh
Q 017853 117 LTVEEAKKVLRAVKM-EMVKDRLRMIERNWIPYSEFVRVCEEACSDR 162 (365)
Q Consensus 117 ~tv~e~rkllr~~~v-e~lk~~L~~~~k~~Isy~EF~~lC~e~~~~~ 162 (365)
||.+++++++..+.- ..||.+|..+. +-++++.+.++.|.+-
T Consensus 1 MS~~~l~~Fl~~~~~d~~l~~~l~~~~----~~~e~~~lA~~~Gy~f 43 (49)
T PF07862_consen 1 MSIESLKAFLEKVKSDPELREQLKACQ----NPEEVVALAREAGYDF 43 (49)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHhcC----CHHHHHHHHHHcCCCC
Confidence 678889999887753 45888888744 7899999999998643
No 41
>PF12535 Nudix_N: Hydrolase of X-linked nucleoside diphosphate N terminal ; PDB: 3Q1P_B 3Q4I_B.
Probab=37.80 E-value=11 Score=29.12 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=22.2
Q ss_pred HHHHHhhHHHHHH-HHhcCCCHHHHHHHHHhhccCCCC
Q 017853 297 FYKSRFSTKQKKL-MKLHDFDGERYNQLRKIFYPHYSP 333 (365)
Q Consensus 297 ~~~~~~~~rq~kL-~kk~gFD~~rY~eL~~e~~~l~~~ 333 (365)
+.++...--|..| |.+..||.+||++|++....+-+.
T Consensus 7 ~a~~lqaiAqtGL~Yskd~yD~ERy~~lr~ia~ella~ 44 (58)
T PF12535_consen 7 WAKRLQAIAQTGLAYSKDPYDRERYEELREIAAELLAE 44 (58)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHH
Confidence 3333333334333 677889999999999887766553
No 42
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=37.68 E-value=68 Score=25.69 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=25.8
Q ss_pred CccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCeEEe
Q 017853 143 RNWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGNVIVL 181 (365)
Q Consensus 143 k~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~Vivl 181 (365)
+..|||++...+..+...++++...+...|.+.|.-|+=
T Consensus 19 ~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~~~gI~Vvd 57 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDDLDPEQIDEIYDTLEDEGIEVVD 57 (82)
T ss_dssp HSS-BHHHHHHH-S-S---HHHHHHHHHHHHTT----B-
T ss_pred cCcCCHHHHHHHcCccCCCHHHHHHHHHHHHHCCCEEec
Confidence 556999999999998889999999999999999988654
No 43
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.51 E-value=3e+02 Score=29.37 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=34.0
Q ss_pred ccCCccccHHHHHHHHHH-hcCChHHHHHHHHHhhhcCCeEEe
Q 017853 140 MIERNWIPYSEFVRVCEE-ACSDRELGLQFAKSLDDAGNVIVL 181 (365)
Q Consensus 140 ~~~k~~Isy~EF~~lC~e-~~~~~~eA~~~a~~Ld~SG~Vivl 181 (365)
.+...++||+||..+|.. ++.+.+.-.-++..|..-+-|++.
T Consensus 165 ~~t~~Vvt~nef~tlc~~~~~~~~~t~~l~l~~l~~~k~i~vg 207 (439)
T KOG2911|consen 165 ECTGAVVTLNEFQTLCSNLGKPDEETKDLVLCWLAYQKHIIVG 207 (439)
T ss_pred ccCceeeeHHHHHHHhccCCCCcHHHHHHHHHHHHhhhheeee
Confidence 345778999999999999 456777777788888888888775
No 44
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=36.07 E-value=1.1e+02 Score=20.78 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=29.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCeEEeCceeee
Q 017853 152 VRVCEEACSDRELGLQFAKSLDDAGNVIVLGNVVFL 187 (365)
Q Consensus 152 ~~lC~e~~~~~~eA~~~a~~Ld~SG~Vivlgd~V~L 187 (365)
-++|...+.+...+.+.++.|.+.|.|-.-++.+.+
T Consensus 12 ~~la~~l~~s~~tv~~~l~~L~~~g~l~~~~~~~~i 47 (48)
T smart00419 12 QEIAELLGLTRETVSRTLKRLEKEGLISREGGRIVI 47 (48)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 456777788999999999999999999776655443
No 45
>COG3800 Predicted transcriptional regulator [General function prediction only]
Probab=35.73 E-value=2.5e+02 Score=28.83 Aligned_cols=119 Identities=21% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCC-chHHHHHhhhhhccCCCCCCCCCchhhhhhhhcccccCcccccCCCCCcccc-----------hhhhhhhhhhccC
Q 017853 49 PGD-NGVFRRFLHKAAMFQPRISPVGGENLMEKLITIDIARDRIRLDGLSPPPTMK-----------AAEKEKEKEKAEG 116 (365)
Q Consensus 49 ~gd-~g~~rrfl~~~~~~~~~~~~p~g~~l~~~lr~~~~~~~ri~ldgl~pp~~~~-----------~~~~~~~~~~~~~ 116 (365)
+|| .+.+++.|+++-...-..+|+-++ ..+|-.|-...||.|-.-.+|..-. ..+.-..+.++.+
T Consensus 37 ~~dl~~aL~~~L~~~hgI~v~~~~~~~~---~~~RryDp~s~~L~ls~~Ls~~~r~fq~A~ela~l~~~~~i~~~~~~~~ 113 (332)
T COG3800 37 GGDLAGALAARLRRRHGITVRILPVEVD---TLRRRYDPHSRRLFLSERLSPGQRLFQMAMELALLEAGELIDAEVEDLK 113 (332)
T ss_pred CCchHHHHHHHHHHhcCeEEEecCCCCc---chhhccCccccEEEeecccChHhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 455 567777777765555444431112 2346667666777776655553211 0111112234568
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHhccCCccccHHHHHHHHHHhcC-----------ChHHHHHHHHHhhhcC
Q 017853 117 LTVEEAKKVLRAVKMEMVKDRLRMIERNWIPYSEFVRVCEEACS-----------DRELGLQFAKSLDDAG 176 (365)
Q Consensus 117 ~tv~e~rkllr~~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~~-----------~~~eA~~~a~~Ld~SG 176 (365)
.+.+|+|.|.|.----=+ ..-..+||..|.+..++.+. +-|++.-=+..|+.+|
T Consensus 114 ~~~~EAr~iar~gLa~Yf------A~AlmmPY~~F~~aA~~~ryDie~L~~rFgvS~Eq~ahRLsTLQR~g 178 (332)
T COG3800 114 FTSAEARRLARIGLANYF------AAALMLPYRQFLAAAERLRYDIELLRSRFGVSFEQAAHRLSTLQRPG 178 (332)
T ss_pred CCCHHHHHHHHHHHHHHH------HHHHhcchHHHHHHHHHhCccHHHHHHHhCccHHHHHHHHHHhcCCC
Confidence 999999998765311111 33457899999999998764 4456555555555443
No 46
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=34.72 E-value=78 Score=19.31 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=26.2
Q ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCe
Q 017853 146 IPYSEFVRVCEEACSDRELGLQFAKSLDDAGNV 178 (365)
Q Consensus 146 Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~V 178 (365)
++|+-.++.|...|. .++|.++.+.+.+.|..
T Consensus 1 ~~~n~li~~~~~~~~-~~~a~~~~~~M~~~g~~ 32 (35)
T TIGR00756 1 VTYNTLIDGLCKAGR-VEEALELFKEMLERGIE 32 (35)
T ss_pred CcHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCC
Confidence 478888888888774 78999999999988864
No 47
>PF14658 EF-hand_9: EF-hand domain
Probab=34.39 E-value=74 Score=25.31 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=35.1
Q ss_pred CCcHHHHHHHHHHHhH--------HHHHHHHhccCC-ccccHHHHHHHHHH
Q 017853 116 GLTVEEAKKVLRAVKM--------EMVKDRLRMIER-NWIPYSEFVRVCEE 157 (365)
Q Consensus 116 ~~tv~e~rkllr~~~v--------e~lk~~L~~~~k-~~Isy~EF~~lC~e 157 (365)
-+.+.+++.+||++.- +.|.+.|+-+++ ..|.++.|+.+.++
T Consensus 14 ~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 14 RVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred eEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3778888888888754 789999988888 99999999988765
No 48
>PF13041 PPR_2: PPR repeat family
Probab=33.80 E-value=65 Score=22.55 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=30.0
Q ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCe
Q 017853 144 NWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGNV 178 (365)
Q Consensus 144 ~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~V 178 (365)
++++|+-.++.|...| ..++|.++.+.+.+.|..
T Consensus 2 ~~~~yn~li~~~~~~~-~~~~a~~l~~~M~~~g~~ 35 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAG-KFEEALKLFKEMKKRGIK 35 (50)
T ss_pred chHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCC
Confidence 5789999999999988 479999999999998865
No 49
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=32.29 E-value=69 Score=30.80 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhhheeEEE---Eec---ccccchhHHHHHhHHHHHHHhhhhh
Q 017853 236 RRELWCGLGYFVVQTAAFMRLTFW---ELS---WDVMEPVCFFVTSSSVIGSYLFFLK 287 (365)
Q Consensus 236 rr~lw~GL~~L~~Q~g~l~rLTfw---eyS---WDVMEPITYFvt~~t~i~gYaYFl~ 287 (365)
+|..-..|..|++..+.++|-.|+ +++ +++++=+|.+.+..|.++.++=-++
T Consensus 28 rrkyt~FL~~L~~~i~~~~y~lf~~~~~~~~g~~~~~~~~~ll~~vvTlvLf~~SG~y 85 (207)
T PF03907_consen 28 RRKYTFFLSLLCLWIAFFFYALFFRPREDGTGLVRYFLKFCLLFGVVTLVLFWASGMY 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhhhhHHHHHHHHHHHHHHHHHHHHhhcccee
Confidence 333445577778888889999999 454 8888889998888888877663333
No 50
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=32.05 E-value=2.6e+02 Score=22.84 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=47.5
Q ss_pred ccCCcHHHHHHHHHHHhHHHHHHHHhccCCccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCeEEeC--ceeee
Q 017853 114 AEGLTVEEAKKVLRAVKMEMVKDRLRMIERNWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGNVIVLG--NVVFL 187 (365)
Q Consensus 114 ~~~~tv~e~rkllr~~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~Vivlg--d~V~L 187 (365)
..+++...++-|++.+.-.. . .......||-.|+..+| |.+++...++++.|.+.|.|..-+ +.+-+
T Consensus 20 ~~~l~~r~~~vLl~L~~~~~--G--~~~~~~~is~~eLa~~~---g~sr~tVsr~L~~Le~~GlI~r~~~~~~~~~ 88 (95)
T TIGR01610 20 GADLSGREFRVLLAIIRLTY--G--WNKKQDRVTATVIAELT---GLSRTHVSDAIKSLARRRIIFRQGMMGIVGV 88 (95)
T ss_pred hCCCCHHHHHHHHHHHHHHh--C--ccccCCccCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeeeecCCceeec
Confidence 44889999998888762110 0 11246677777665555 778999999999999999998776 54443
No 51
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=31.45 E-value=1.1e+02 Score=21.64 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=27.8
Q ss_pred CccccHHHHHHHHHHhc---CChHHHHHHHHHhhhcCC
Q 017853 143 RNWIPYSEFVRVCEEAC---SDRELGLQFAKSLDDAGN 177 (365)
Q Consensus 143 k~~Isy~EF~~lC~e~~---~~~~eA~~~a~~Ld~SG~ 177 (365)
+..|+.++|.+++...| .+++++..+...+|..+.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~ 39 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGD 39 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSS
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCC
Confidence 46799999999996544 678899999888876553
No 52
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=31.42 E-value=3.9e+02 Score=24.03 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=8.8
Q ss_pred hHHHHHHHHhh
Q 017853 189 PEQVTKAIEGV 199 (365)
Q Consensus 189 P~~V~~~v~~~ 199 (365)
|+++++.+..-
T Consensus 53 P~~iA~~i~~~ 63 (181)
T PF08006_consen 53 PKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHh
Confidence 89999888763
No 53
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=31.07 E-value=92 Score=28.23 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 017853 233 ALVRRELWCGLGYFVVQTAA 252 (365)
Q Consensus 233 ~~~rr~lw~GL~~L~~Q~g~ 252 (365)
--..-++|+||.|+.+-...
T Consensus 19 ~~~T~laW~gf~~~~~~~l~ 38 (137)
T PRK14585 19 YVATTILWTLFALFIFLFAM 38 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567899999998765544
No 54
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=30.97 E-value=4.4e+02 Score=29.39 Aligned_cols=88 Identities=13% Similarity=0.207 Sum_probs=61.9
Q ss_pred cCCcHHHHHHHHHHHhHH-------------HHHHHHhccCCccccHHHHHHHHHHh-cCC-------hHHHHHHHHHhh
Q 017853 115 EGLTVEEAKKVLRAVKME-------------MVKDRLRMIERNWIPYSEFVRVCEEA-CSD-------RELGLQFAKSLD 173 (365)
Q Consensus 115 ~~~tv~e~rkllr~~~ve-------------~lk~~L~~~~k~~Isy~EF~~lC~e~-~~~-------~~eA~~~a~~Ld 173 (365)
.|+....|-++.+..++. .|+......|...++.+++++.|.+. +.+ ++.....+..|.
T Consensus 187 ~gigF~~aD~iA~~~g~~~~d~~Ri~a~i~~~L~~~~~~~Ght~~~~~~l~~~~~~ll~~~~~~~~~~~~~l~~~~~~l~ 266 (720)
T TIGR01448 187 KGIGFLTADQLAQALGIALNDPRRITAGLVYSLQQACTEEGHTYLPRNRFIKQVVHLLNVQPQERLLVPEAVELERLYLD 266 (720)
T ss_pred CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhcCCCEEccHHHHHHHHHHHhCCCcccccccHHHHHHHHHHHh
Confidence 477777777776655543 46655546799999999999998875 333 233444455677
Q ss_pred hcCCeEEeCceeeeCh-----HHHHHHHHhhCCC
Q 017853 174 DAGNVIVLGNVVFLKP-----EQVTKAIEGVIPL 202 (365)
Q Consensus 174 ~SG~Vivlgd~V~LrP-----~~V~~~v~~~lpl 202 (365)
..|.++.-++.+|+.. ..|++.+..++..
T Consensus 267 ~~~~l~~~~~~i~~~~~~~~E~~ia~~l~~~~~~ 300 (720)
T TIGR01448 267 EEPKLAAEDGRIYLPSLFRAEKQIASHIRRLLAT 300 (720)
T ss_pred hCCCEEEECCEEeeHHHHHHHHHHHHHHHHHhcC
Confidence 8888887788999976 3677777766543
No 55
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=29.64 E-value=1.3e+02 Score=27.60 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEEEEecccccchhHHHHHhHHHHHHHhhhhhcCCCCC
Q 017853 214 RKEYEEMEKQKAVIDKKADALVRRELWCGLGYFVVQTAAFMRLTFWELSWDVMEPVCFFVTSSSVIGSYLFFLKTAKEPT 293 (365)
Q Consensus 214 r~EL~~Le~~K~eID~~A~~~~rr~lw~GL~~L~~Q~g~l~rLTfweySWDVMEPITYFvt~~t~i~gYaYFl~T~re~S 293 (365)
.+.+.++.+....--..++......+|..+.++++-..+.+=+..|-+..+-=-+....+..+.++++.+.|++--=|.-
T Consensus 114 l~~l~~l~~~R~~Rl~~~~~~lp~~~w~vl~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~l~a~~i~~~l~li~~ld~P 193 (209)
T PF14023_consen 114 LSALNDLIDARRTRLSQAQSSLPPPLWIVLLILAALLLIGFLLASALFLGPNRRAHLIAIALFAASIALALFLILDLDNP 193 (209)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455555444444444556666777875444332222211000122222222233334445556677777775544555
Q ss_pred hhhHH
Q 017853 294 FGGFY 298 (365)
Q Consensus 294 ye~~~ 298 (365)
|.+.+
T Consensus 194 f~G~i 198 (209)
T PF14023_consen 194 FSGPI 198 (209)
T ss_pred CCCCC
Confidence 66544
No 56
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=29.09 E-value=4.6e+02 Score=25.43 Aligned_cols=128 Identities=10% Similarity=0.047 Sum_probs=71.9
Q ss_pred HHHHHHHhHHHHHHHHhccCCccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCeEEeCceeeeChHHHHHHHHhhCCC
Q 017853 123 KKVLRAVKMEMVKDRLRMIERNWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGNVIVLGNVVFLKPEQVTKAIEGVIPL 202 (365)
Q Consensus 123 rkllr~~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~Vivlgd~V~LrP~~V~~~v~~~lpl 202 (365)
|+..+.-....+...|++.+. ++..|+.+.. +.+..-+.+=+..|++.|.+....+.+.+.+.. .+.
T Consensus 11 ~~~~~~eR~~~Il~~L~~~~~--vtv~eLa~~l---~VS~~TIRRDL~~Le~~G~l~r~~GGa~~~~~~--------~~~ 77 (269)
T PRK09802 11 RVTGTSERREQIIQRLRQQGS--VQVNDLSALY---GVSTVTIRNDLAFLEKQGIAVRAYGGALICDST--------TPS 77 (269)
T ss_pred hhccHHHHHHHHHHHHHHcCC--EeHHHHHHHH---CCCHHHHHHHHHHHHhCCCeEEEeCCEEecCcC--------CCc
Confidence 333444445556666777665 8888877766 777889999999999999998874443331100 000
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--H-HHHHHHHHHhh-heeEEEEecccccchh
Q 017853 203 PSANPNQNHPRRKEYEEMEKQKAVIDKKADALVR--RELWC--G-LGYFVVQTAAF-MRLTFWELSWDVMEPV 269 (365)
Q Consensus 203 ~~~~~~~~d~~r~EL~~Le~~K~eID~~A~~~~r--r~lw~--G-L~~L~~Q~g~l-~rLTfweySWDVMEPI 269 (365)
.. . +..+....-.+.|.+|.++|..... -.++. | -++.+++...- ..+|-.--|.++..-+
T Consensus 78 ~~-----~-~~~~r~~~~~~~K~~IA~~Aa~~I~dgd~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l 144 (269)
T PRK09802 78 VE-----P-SVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANAL 144 (269)
T ss_pred cC-----C-CHHHHHHhCHHHHHHHHHHHHhhCCCCCEEEECCchHHHHHHHhcCcCCCeEEEeCCHHHHHHH
Confidence 00 0 1122223334577888888876654 22222 2 23333443321 2477776666655443
No 57
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=27.81 E-value=2.5e+02 Score=24.51 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhheeEEEEecccccchhHHHHHhHHHHHHHhhhhh
Q 017853 223 QKAVIDKKADALVRRELWCGLGYFVVQT--AAFMRLTFWELSWDVMEPVCFFVTSSSVIGSYLFFLK 287 (365)
Q Consensus 223 ~K~eID~~A~~~~rr~lw~GL~~L~~Q~--g~l~rLTfweySWDVMEPITYFvt~~t~i~gYaYFl~ 287 (365)
+-..++++++--.+.+..+.++.+++=. .+++--.+..+++...==+.|.++....+++..+|++
T Consensus 51 el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~~~~~~~~lF~~am~~l~~sl~~fl~ 117 (130)
T PF11026_consen 51 ELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSIDLSWLVAILFVLAMLLLIASLVLFLR 117 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555444455555444443222 2222123445566655557777777788889888886
No 58
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=27.66 E-value=35 Score=29.78 Aligned_cols=66 Identities=24% Similarity=0.368 Sum_probs=39.7
Q ss_pred CCCchHHHHHhhhhhccCCCCCCCCCchhhhhhhhcccccC--cccccCC------CCCcccchhhhhhhh----hhccC
Q 017853 49 PGDNGVFRRFLHKAAMFQPRISPVGGENLMEKLITIDIARD--RIRLDGL------SPPPTMKAAEKEKEK----EKAEG 116 (365)
Q Consensus 49 ~gd~g~~rrfl~~~~~~~~~~~~p~g~~l~~~lr~~~~~~~--ri~ldgl------~pp~~~~~~~~~~~~----~~~~~ 116 (365)
+-|.-|++.|+.. .+||-|==+++||+-+ |-|||.+ .+++...... ...+ -+.-.
T Consensus 36 ~E~~~Fi~~Fi~~------------rGnlKe~e~~lgiSYPTvR~rLd~ii~~lg~~~~~~~~~~~-~~~~IL~~L~~Ge 102 (113)
T PF09862_consen 36 PEQLEFIKLFIKN------------RGNLKEMEKELGISYPTVRNRLDKIIEKLGYEEDEEEEEED-ERKEILDKLEKGE 102 (113)
T ss_pred HHHHHHHHHHHHh------------cCCHHHHHHHHCCCcHHHHHHHHHHHHHhCCCCCcccccch-hHHHHHHHHHcCC
Confidence 4567788888876 4578777778888655 6677765 2222111111 0101 02336
Q ss_pred CcHHHHHHHHH
Q 017853 117 LTVEEAKKVLR 127 (365)
Q Consensus 117 ~tv~e~rkllr 127 (365)
||++||.++||
T Consensus 103 Is~eeA~~~Lk 113 (113)
T PF09862_consen 103 ISVEEALEILK 113 (113)
T ss_pred CCHHHHHHHhC
Confidence 99999998875
No 59
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=27.63 E-value=2.9e+02 Score=29.60 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=64.5
Q ss_pred CCcHHHHHHHHHHHhHHH--HHHHHhccCCccccHHHHHHHHHHhc--CChHHHHHHHHHhhhcCCeEEe----Cceeee
Q 017853 116 GLTVEEAKKVLRAVKMEM--VKDRLRMIERNWIPYSEFVRVCEEAC--SDRELGLQFAKSLDDAGNVIVL----GNVVFL 187 (365)
Q Consensus 116 ~~tv~e~rkllr~~~ve~--lk~~L~~~~k~~Isy~EF~~lC~e~~--~~~~eA~~~a~~Ld~SG~Vivl----gd~V~L 187 (365)
.+.-+|+++-++....+- +=.+++.+-...|.-+|.-+.|.+.| ++.+++.++.+.+|+.|.-.+- +|.-.|
T Consensus 67 ~vDy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 67 RVDYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred cccHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 699999999988876655 55788888888999999999999998 5889999999999999998763 667777
Q ss_pred ChHH
Q 017853 188 KPEQ 191 (365)
Q Consensus 188 rP~~ 191 (365)
.|+.
T Consensus 147 ~p~s 150 (463)
T KOG0036|consen 147 YPES 150 (463)
T ss_pred CChh
Confidence 7754
No 60
>PF13994 PgaD: PgaD-like protein
Probab=27.02 E-value=4.3e+02 Score=23.13 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017853 231 ADALVRRELWCGLGYFVVQT 250 (365)
Q Consensus 231 A~~~~rr~lw~GL~~L~~Q~ 250 (365)
+.....-++|+|+.+|..-+
T Consensus 16 ~~~~lT~~~W~~~~yL~~pl 35 (138)
T PF13994_consen 16 IDYFLTLLFWGGFIYLWRPL 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44557788999988887765
No 61
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=25.89 E-value=1.5e+02 Score=32.33 Aligned_cols=46 Identities=7% Similarity=0.116 Sum_probs=37.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCeEEeCceeeeChHHHHHHHHh
Q 017853 153 RVCEEACSDRELGLQFAKSLDDAGNVIVLGNVVFLKPEQVTKAIEG 198 (365)
Q Consensus 153 ~lC~e~~~~~~eA~~~a~~Ld~SG~Vivlgd~V~LrP~~V~~~v~~ 198 (365)
+++.+-+.+++.+.++++.|.+.|.++.+++-+|++++.+.+++..
T Consensus 511 ~~~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~~~~~~ 556 (614)
T PRK10512 511 DLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVQFANM 556 (614)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCEEECHHHHHHHHHH
Confidence 3455556677888999999999999999999999999866655544
No 62
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=25.83 E-value=2.1e+02 Score=24.95 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHHH------------hHHHHHHHHhccCCccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCeEE
Q 017853 117 LTVEEAKKVLRAV------------KMEMVKDRLRMIERNWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGNVIV 180 (365)
Q Consensus 117 ~tv~e~rkllr~~------------~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~Viv 180 (365)
.|++||+++|=.+ .+..+.++|.+..... +...+-.+......+...+.+.+++-|++|.
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vK 74 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSL----EVNGLEAELEELEARLRELIDEIEELGVEVK 74 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh----hHHhHHHHHHHHHHHHHHHHHHHHHcCcEEe
Confidence 4777777775333 2333444444433322 2233333333335688888899999999987
No 63
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=25.31 E-value=1.2e+02 Score=17.00 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=15.4
Q ss_pred HHhccCCccccHHHHHHHHHH
Q 017853 137 RLRMIERNWIPYSEFVRVCEE 157 (365)
Q Consensus 137 ~L~~~~k~~Isy~EF~~lC~e 157 (365)
..+.++...|++.||..++.+
T Consensus 8 ~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 8 LFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHCCCCCCcEeHHHHHHHHHh
Confidence 345566778999999888754
No 64
>PF09317 DUF1974: Domain of unknown function (DUF1974); InterPro: IPR015396 This C-terminal domain is functionally uncharacterised and is predominantly found in various prokaryotic acyl-coenzyme a dehydrogenases. ; GO: 0003995 acyl-CoA dehydrogenase activity, 0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase, 0055114 oxidation-reduction process
Probab=24.43 E-value=2.7e+02 Score=27.85 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=51.8
Q ss_pred CCCchhhhhhhh----cccccCcccccCCCCCcccchhhhhhhhhhccCCcHHHHHHHHHHHhHHH-HHHHHhccCCccc
Q 017853 72 VGGENLMEKLIT----IDIARDRIRLDGLSPPPTMKAAEKEKEKEKAEGLTVEEAKKVLRAVKMEM-VKDRLRMIERNWI 146 (365)
Q Consensus 72 p~g~~l~~~lr~----~~~~~~ri~ldgl~pp~~~~~~~~~~~~~~~~~~tv~e~rkllr~~~ve~-lk~~L~~~~k~~I 146 (365)
++.+.|..++-. -+-.++|+.=+--.|+.+ .+..|.=-+=+..+...-.+++ +|...+...=...
T Consensus 176 ~PsD~l~~~vA~~l~~p~~~RdRLt~~~y~~~~~----------~d~~g~le~A~~~~~~ae~i~~kl~~A~k~g~l~~~ 245 (284)
T PF09317_consen 176 KPSDKLGHEVARLLMTPGAARDRLTAGIYLPRDE----------DDPVGRLEEAFQLVVEAEPIEKKLRKAIKKGQLPKQ 245 (284)
T ss_pred CCChHHHHHHHHHHcCChHHHHHHhCCCCCCCCC----------CChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCC
Confidence 556655555544 345667776555566532 1111111111222222222222 3333333322344
Q ss_pred cHHHHHHHHHHhc-CChHHHHHHHHHhhhcCCeEEeC
Q 017853 147 PYSEFVRVCEEAC-SDRELGLQFAKSLDDAGNVIVLG 182 (365)
Q Consensus 147 sy~EF~~lC~e~~-~~~~eA~~~a~~Ld~SG~Vivlg 182 (365)
+..+.++.+.+.| ++.+|+..+.++-.-.-.||.+.
T Consensus 246 ~~~~~~~~A~~~gvIt~~Ea~~l~~a~~~r~~~I~VD 282 (284)
T PF09317_consen 246 SLEEQIDEALEKGVITAEEAELLREAEELRDDVIQVD 282 (284)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHhhcCC
Confidence 6778888888877 79999998877765555555443
No 65
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=24.12 E-value=98 Score=24.12 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeEE
Q 017853 231 ADALVRRELWCGLGYFVVQTAAFMRLTF 258 (365)
Q Consensus 231 A~~~~rr~lw~GL~~L~~Q~g~l~rLTf 258 (365)
.+++.++..|.-++++.+-++++..+||
T Consensus 31 ~qk~~~~~~~i~~~~~i~~l~v~~~~~~ 58 (59)
T PF09889_consen 31 RQKRMRKTQYIFFGIFILFLAVWIFMTF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444
No 66
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.99 E-value=2.2e+02 Score=25.39 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.5
Q ss_pred CccccHHHHHHHHHH-hcCChHHHHHHHHHhhhcCCeEE
Q 017853 143 RNWIPYSEFVRVCEE-ACSDRELGLQFAKSLDDAGNVIV 180 (365)
Q Consensus 143 k~~Isy~EF~~lC~e-~~~~~~eA~~~a~~Ld~SG~Viv 180 (365)
|..++|+||...|.+ .++++..|.++-++.++-|....
T Consensus 36 K~~l~HGef~~Wle~~~~~s~rtA~~~M~va~~yg~~~~ 74 (130)
T PF11300_consen 36 KELLPHGEFGKWLEEEVGYSQRTAQRFMQVAEEYGSNQS 74 (130)
T ss_pred HHhCCHHHHHHHHHHHcCcCHHHHHHHHHHHHHhCcccc
Confidence 456999999999995 57899999999999999887644
No 67
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=23.98 E-value=2.1e+02 Score=20.77 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=23.2
Q ss_pred HHHHHhccCCccccHHHHHHHHHHhcC
Q 017853 134 VKDRLRMIERNWIPYSEFVRVCEEACS 160 (365)
Q Consensus 134 lk~~L~~~~k~~Isy~EF~~lC~e~~~ 160 (365)
+=..++.++...|+++||.+++...+.
T Consensus 5 ~F~~~D~d~~G~i~~~el~~~~~~~~~ 31 (66)
T PF13499_consen 5 AFKKFDKDGDGYISKEELRRALKHLGR 31 (66)
T ss_dssp HHHHHSTTSSSEEEHHHHHHHHHHTTS
T ss_pred HHHHHcCCccCCCCHHHHHHHHHHhcc
Confidence 335678899999999999999999874
No 68
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=23.32 E-value=1.7e+02 Score=30.32 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhhheeEEE-------EecccccchhHH-HHHhHHHHHHHhhhhhcCCCCChhhHHHHHhhHHHHH
Q 017853 237 RELWCGLGYFVVQTAAFMRLTFW-------ELSWDVMEPVCF-FVTSSSVIGSYLFFLKTAKEPTFGGFYKSRFSTKQKK 308 (365)
Q Consensus 237 r~lw~GL~~L~~Q~g~l~rLTfw-------eySWDVMEPITY-Fvt~~t~i~gYaYFl~T~re~Sye~~~~~~~~~rq~k 308 (365)
.++-..+++.+.-..++-.+||| .|+|- |---| |.+.-++.|+++-|.+|+.++ .+.+.+++..-|.-|
T Consensus 24 ~~~t~~~ai~ii~~~f~r~~~l~~~~g~~lSf~WA--Esn~fgF~~~~s~~c~~cl~~wT~~~f-i~~f~~~L~~lR~LR 100 (353)
T PF03268_consen 24 GIFTRLIAIIIIALIFRRCWMLMQIEGKSLSFGWA--ESNMFGFMAMQSFVCAICLFGWTKNGF-IPKFEKKLARLRTLR 100 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCceeeeehh--hcchhHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHh
Confidence 33333333333333333444555 35665 76555 788888899999999999987 677777766555545
Q ss_pred HHHhcCCCHHHHHHHHHh
Q 017853 309 LMKLHDFDGERYNQLRKI 326 (365)
Q Consensus 309 L~kk~gFD~~rY~eL~~e 326 (365)
+-.-+. .|.|-.|...
T Consensus 101 v~~n~~--~D~Y~~lh~k 116 (353)
T PF03268_consen 101 VEPNQE--IDDYRILHRK 116 (353)
T ss_pred CCcccc--cchHHHHHHH
Confidence 444444 7788777554
No 69
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=23.16 E-value=2.4e+02 Score=30.53 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=44.6
Q ss_pred ccCCcHHHHHHHHHHHhHHHHHHHHhccCC-ccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCeEEe
Q 017853 114 AEGLTVEEAKKVLRAVKMEMVKDRLRMIER-NWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGNVIVL 181 (365)
Q Consensus 114 ~~~~tv~e~rkllr~~~ve~lk~~L~~~~k-~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~Vivl 181 (365)
...+|.+|++.+++.. ..|+ +-+--+.|+-.|.-.|.+.+|-..++++|-++|.++.+
T Consensus 97 G~~Ls~eEi~~ii~~i----------~~g~~~d~QiaAfL~Al~~kG~t~~Eia~lt~AM~~sg~~l~~ 155 (500)
T TIGR03327 97 GEKLTKDEIRAIVADI----------VDDKLSDIEISAFVTASYINGMDMDEIEWLTRAMAETGDMLSF 155 (500)
T ss_pred CCCCCHHHHHHHHHHH----------HcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcccC
Confidence 3358899988888765 2222 33456788888888999999999999999999988753
No 70
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=22.95 E-value=2.5e+02 Score=22.67 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHh-ccCCc-cccHHHHHHHHHH-----hc--CChHHHHHHHHHhhhcC
Q 017853 137 RLR-MIERN-WIPYSEFVRVCEE-----AC--SDRELGLQFAKSLDDAG 176 (365)
Q Consensus 137 ~L~-~~~k~-~Isy~EF~~lC~e-----~~--~~~~eA~~~a~~Ld~SG 176 (365)
..+ .+|.. .|+.+||..+.+. .| .++++..++.+.+|..|
T Consensus 16 ~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~ 64 (88)
T cd05027 16 QYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDG 64 (88)
T ss_pred HhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCC
Confidence 344 46777 6999999999998 55 46778888888887655
No 71
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=22.69 E-value=1.1e+02 Score=29.87 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhheeEEEEecccccchhHHHH------------HhHHHHHHHhhhhhcCCC
Q 017853 236 RRELWCGLGYFVVQTAAFMRLTFWELSWDVMEPVCFFV------------TSSSVIGSYLFFLKTAKE 291 (365)
Q Consensus 236 rr~lw~GL~~L~~Q~g~l~rLTfweySWDVMEPITYFv------------t~~t~i~gYaYFl~T~re 291 (365)
--++|..+..+..||.+|. +||++ |+|-+++.|.|+++.+..
T Consensus 88 ~~F~~n~~vs~~Fq~iGFl--------------lty~l~tthAar~Gs~aGlGltli~~~~~~~~~~~ 141 (233)
T PF10176_consen 88 FSFVWNFLVSFSFQWIGFL--------------LTYCLHTTHAARYGSRAGLGLTLIKYGLIMRPSTV 141 (233)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHhcchHhhccchhhchHHHHhhhheEeeccC
Confidence 3588999999999998886 57765 567788999999988764
No 72
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=22.08 E-value=2.7e+02 Score=21.21 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=31.3
Q ss_pred CCcHHHHHHHHHHHhHHHHHHHHhccCC-ccccHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 017853 116 GLTVEEAKKVLRAVKMEMVKDRLRMIER-NWIPYSEFVRVCEEACSDRELGLQFAKSLDDAG 176 (365)
Q Consensus 116 ~~tv~e~rkllr~~~ve~lk~~L~~~~k-~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG 176 (365)
.+|.+|++.+++.. .+|+ +-+--..|+-.+.-.|.+++|-..++++|.+.|
T Consensus 14 ~Ls~~e~~~~~~~i----------~~g~~s~~qiaAfL~al~~kget~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 14 DLSREEAKAAFDAI----------LDGEVSDAQIAAFLMALRMKGETPEEIAGFAKAMREHA 65 (66)
T ss_dssp ---HHHHHHHHHHH----------HTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHH----------HcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 47777777777665 3332 455667777777777888888888888887765
No 73
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=21.96 E-value=2.9e+02 Score=32.15 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=38.0
Q ss_pred CCccccHHHHHHHHH---------HhcCChHHHHHHHHHhhhcCCeEEeCceeee
Q 017853 142 ERNWIPYSEFVRVCE---------EACSDRELGLQFAKSLDDAGNVIVLGNVVFL 187 (365)
Q Consensus 142 ~k~~Isy~EF~~lC~---------e~~~~~~eA~~~a~~Ld~SG~Vivlgd~V~L 187 (365)
+...++++|.++.|. +.|++.+++.++++.|.+.|.|..-.+..|.
T Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~g~i~~~~~g~y~ 910 (915)
T PTZ00111 856 SNKSLDLNEVLSLCHKTFKDNRDHKDGEIYKLISEVLNKMVQEGTAVRENNSYYL 910 (915)
T ss_pred cCCceeHHHHHHHHHhhccccchhccCCCHHHHHHHHHHHHhCCeEeeeCCCchh
Confidence 346799999999994 4578999999999999999998777665554
No 74
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=21.85 E-value=1.5e+02 Score=29.16 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcC-------CeEEeCceeeeChH
Q 017853 148 YSEFVRVCEEACSDRELGLQFAKSLDDAG-------NVIVLGNVVFLKPE 190 (365)
Q Consensus 148 y~EF~~lC~e~~~~~~eA~~~a~~Ld~SG-------~Vivlgd~V~LrP~ 190 (365)
|.++.++-.+.|.|+.|+..|++.+..+. .||.+|+.+...|+
T Consensus 2 ~~~~~~~~~~~~~~~~e~~~~l~~f~~~~~~~~~~f~VIK~GG~~~~~~~ 51 (271)
T cd04236 2 YRDVKAFLHQKGGDPREARYWLTQFQIAMPNDWPAFAVLEVDHSVFRSLE 51 (271)
T ss_pred cchHHHHHHHhCCCHHHHHHHHHHhhccCCCCCCCEEEEEEChhhhcCch
Confidence 56788888888999999999999998764 58888999997675
No 75
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=21.63 E-value=3.2e+02 Score=22.45 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHhccCCccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 017853 117 LTVEEAKKVLRAVKMEMVKDRLRMIERNWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGN 177 (365)
Q Consensus 117 ~tv~e~rkllr~~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~ 177 (365)
++-+|--.|.+-- .-|-.||-. ..-||-+.=-+|+.+.|++......+|..|++=|+
T Consensus 24 Vse~erd~LAhYF--QlLitRLmn--neeIsEeaQ~EMA~eAgi~~~rID~IA~fLNqWGN 80 (81)
T PF10820_consen 24 VSEAERDALAHYF--QLLITRLMN--NEEISEEAQQEMASEAGIDEQRIDDIANFLNQWGN 80 (81)
T ss_pred cchhhhhHHHHHH--HHHHHHHhc--cHhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHhcc
Confidence 4444444444444 344455543 66788899999999999999999999999998875
No 76
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=21.47 E-value=2.8e+02 Score=29.88 Aligned_cols=72 Identities=22% Similarity=0.217 Sum_probs=59.2
Q ss_pred hccCCcHHHHHHHHHHHhHHHHHHHHhccCCccccHHHHHHHHHHhc---CChHHHHHHHHHhhhcCCeEEe-CceeeeC
Q 017853 113 KAEGLTVEEAKKVLRAVKMEMVKDRLRMIERNWIPYSEFVRVCEEAC---SDRELGLQFAKSLDDAGNVIVL-GNVVFLK 188 (365)
Q Consensus 113 ~~~~~tv~e~rkllr~~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~---~~~~eA~~~a~~Ld~SG~Vivl-gd~V~Lr 188 (365)
..+|+++.+|-.+++.+ ..+|+..++..||-+|+.++..+.- ..++.|.+++......|.++|- +..-|=.
T Consensus 104 ~~aG~~~~~Ay~iA~~V-----e~~Lr~~~~~~Is~~eL~~~v~~~l~~~~g~e~a~ry~~~~~~~~~~~v~~~~~~~~~ 178 (475)
T PRK12337 104 EDAGFSPREAYELASAV-----ELRLRQEGVREIGAKELEKRTARELAERYGEEARLRYRARQQNAGELFVEEAEGAPRV 178 (475)
T ss_pred HHcCCCHHHHHHHHHHH-----HHHHHHcCCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHhcccchheeeeeCCCCCCC
Confidence 36699999999999876 5788899999999999999988753 4589999999999999998886 4444444
Q ss_pred h
Q 017853 189 P 189 (365)
Q Consensus 189 P 189 (365)
|
T Consensus 179 P 179 (475)
T PRK12337 179 P 179 (475)
T ss_pred C
Confidence 5
No 77
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=21.32 E-value=1.7e+02 Score=23.13 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=25.8
Q ss_pred ChhhHHHHHhhHHHHHHHHhcCCCHHHHHHHHHhhcc
Q 017853 293 TFGGFYKSRFSTKQKKLMKLHDFDGERYNQLRKIFYP 329 (365)
Q Consensus 293 Sye~~~~~~~~~rq~kL~kk~gFD~~rY~eL~~e~~~ 329 (365)
+.+.+ +..+.....+....+|+++++||++-..+..
T Consensus 35 ~~~~l-~~~a~~~~~~~I~~~GLtv~~fN~I~~~~q~ 70 (78)
T PF13767_consen 35 EIQEL-QEEAQEEMVEAIEENGLTVERFNEITQAAQS 70 (78)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 34444 3345555567779999999999999887764
No 78
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=21.21 E-value=1.1e+02 Score=22.92 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHhhhcCCeEEeCceeee
Q 017853 161 DRELGLQFAKSLDDAGNVIVLGNVVFL 187 (365)
Q Consensus 161 ~~~eA~~~a~~Ld~SG~Vivlgd~V~L 187 (365)
++.....+++.|.+.|.+.+-|+.|.|
T Consensus 33 ~~k~~~~ll~~l~~~g~l~~~g~~v~L 59 (59)
T PF09106_consen 33 PPKLFNALLEALVAEGRLKVEGDWVRL 59 (59)
T ss_dssp -HCCHHHHHHHHHHTTSEEEESSEEEE
T ss_pred CHHHHHHHHHHHHHCCCeeeECCEeeC
Confidence 456777888999999999999999876
No 79
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=21.18 E-value=1.5e+02 Score=26.59 Aligned_cols=46 Identities=9% Similarity=0.005 Sum_probs=33.2
Q ss_pred CCCCChhhHHHHH-hhHHHHHHHHhcCCCHHHHHHHHHhhccCCCCC
Q 017853 289 AKEPTFGGFYKSR-FSTKQKKLMKLHDFDGERYNQLRKIFYPHYSPP 334 (365)
Q Consensus 289 ~re~Sye~~~~~~-~~~rq~kL~kk~gFD~~rY~eL~~e~~~l~~~~ 334 (365)
+.+..|.++-+.. +.+.--++.+.+|+|...|+.|.+.-+.....+
T Consensus 53 K~~C~rsdiPd~~~I~raai~~A~~~gWd~~~y~~l~~~se~~Yq~L 99 (128)
T TIGR01004 53 KMQCNRSDLPDDGSILKTANNVAIGKGWDSGRQEDLPQHSDDLYQGL 99 (128)
T ss_pred HhcCCcccCCcHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHH
Confidence 4566777766665 556667889999999999998877655544433
No 80
>PF11261 IRF-2BP1_2: Interferon regulatory factor 2-binding protein zinc finger; InterPro: IPR022750 IRF-2BP1 and IRF-2BP2 are nuclear transcriptional repressor proteins and can inhibit both enhancer-activated and basal transcription. They both contain N-terminal zinc finger and C-terminal RING finger domains []. This entry represents the N-terminal zinc finger domain of IRF-2BP1 and IRF-2BP2.
Probab=21.01 E-value=27 Score=26.80 Aligned_cols=12 Identities=58% Similarity=1.633 Sum_probs=10.2
Q ss_pred EEecccccchhH
Q 017853 259 WELSWDVMEPVC 270 (365)
Q Consensus 259 weySWDVMEPIT 270 (365)
|-.-||+.||||
T Consensus 16 Wami~df~EpVC 27 (54)
T PF11261_consen 16 WAMIWDFSEPVC 27 (54)
T ss_pred hHHHhhccchhh
Confidence 556799999998
No 81
>PRK04350 thymidine phosphorylase; Provisional
Probab=20.94 E-value=2.8e+02 Score=29.89 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=44.5
Q ss_pred ccCCcHHHHHHHHHHHhHHHHHHHHhccCC-ccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCeEEe
Q 017853 114 AEGLTVEEAKKVLRAVKMEMVKDRLRMIER-NWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGNVIVL 181 (365)
Q Consensus 114 ~~~~tv~e~rkllr~~~ve~lk~~L~~~~k-~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~Vivl 181 (365)
...+|-+|++.+++.. ..|+ +-+--..|+-.|.-.|.+.+|-.-++++|-++|.++.+
T Consensus 91 G~~Ls~eE~~~~i~~i----------~~g~~sd~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~~g~~l~~ 149 (490)
T PRK04350 91 GEKLDKEEIEAIIRDI----------VAGRYSDIELSAFLTASAINGLDMDEIEALTRAMVETGERLDW 149 (490)
T ss_pred CCCCCHHHHHHHHHHH----------HcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccC
Confidence 3358889988887765 2222 33456788888888999999999999999999988743
No 82
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=20.87 E-value=4.1e+02 Score=21.52 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=13.2
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 017853 222 KQKAVIDKKA--DALVRRELWCGLGYFVV 248 (365)
Q Consensus 222 ~~K~eID~~A--~~~~rr~lw~GL~~L~~ 248 (365)
++|++.|++. +..-+.++..|+.++..
T Consensus 32 eEk~~~D~~~l~r~~g~~~~~~~i~~li~ 60 (97)
T PF12650_consen 32 EEKEKYDKKKLCRFMGKFMLIIGIILLIG 60 (97)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666654 33334444445444443
No 83
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=20.68 E-value=3.3e+02 Score=19.48 Aligned_cols=53 Identities=19% Similarity=0.146 Sum_probs=36.2
Q ss_pred CCcHHHHHHHHHHHhHHHHHHHHhccCCccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCeEEe
Q 017853 116 GLTVEEAKKVLRAVKMEMVKDRLRMIERNWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGNVIVL 181 (365)
Q Consensus 116 ~~tv~e~rkllr~~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~Vivl 181 (365)
|+|..+++=|.-.. ..+...++-.| +|...+.++....+.++.|.+.|-|-.-
T Consensus 2 glt~~q~~vL~~l~----------~~~~~~~t~~~---la~~l~~~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 2 GLTPSQFRVLMALA----------RHPGEELTQSE---LAERLGISKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp TSTHHHHHHHHHHH----------HSTTSGEEHHH---HHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHHHHH----------HCCCCCcCHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 56666665554333 55555555554 5666688899999999999999998654
No 84
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=20.68 E-value=96 Score=35.35 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=34.1
Q ss_pred HhHHHHHHHHhccCCccccHHHHHHHHHHhc----CChHHHHHHHHH-hhhcCCeEEeCc
Q 017853 129 VKMEMVKDRLRMIERNWIPYSEFVRVCEEAC----SDRELGLQFAKS-LDDAGNVIVLGN 183 (365)
Q Consensus 129 ~~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~----~~~~eA~~~a~~-Ld~SG~Vivlgd 183 (365)
+|||.|=..+ +=|.+||+.+|.++|.+.- .+-.+|.+-+.. |++=..||.+|+
T Consensus 316 aqIEsL~ddi--DFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg 373 (902)
T KOG0104|consen 316 AQIESLIDDI--DFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGG 373 (902)
T ss_pred HHHHHHhhcc--ccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecC
Confidence 4555554433 4588899999999999963 233555555443 555556666665
No 85
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=20.63 E-value=1.6e+02 Score=25.29 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 017853 211 HPRRKEYEEMEKQKAVIDKK-ADALVRRELWCGLGYF 246 (365)
Q Consensus 211 d~~r~EL~~Le~~K~eID~~-A~~~~rr~lw~GL~~L 246 (365)
..++.|++.|+++..+++.+ |++..|--+.+||+=|
T Consensus 6 s~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLgei 42 (98)
T PRK13848 6 SKIREEIAKLQEQLKQAETREAERIGRIALKAGLGEI 42 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 45788999998877777665 6667777778888744
No 86
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.23 E-value=2.9e+02 Score=21.01 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=34.7
Q ss_pred HHHHH-hHHHHHHHHhccCCccccHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 017853 125 VLRAV-KMEMVKDRLRMIERNWIPYSEFVRVCEEACSDRELGLQFAKSLDDAG 176 (365)
Q Consensus 125 llr~~-~ve~lk~~L~~~~k~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG 176 (365)
+++.. .+..+-..|.. +.+++.+|...++.... +.+.+.++++.|..-|
T Consensus 8 lv~~l~~~~~il~~L~~--~~vlt~~e~~~i~~~~~-~~~k~~~Lld~l~~kg 57 (80)
T cd01671 8 LVKDLLDVEDVLDHLLS--DGVLTEEEYEKIRSEST-RQDKARKLLDILPRKG 57 (80)
T ss_pred HHHHHccHHHHHHHHHH--cCCCCHHHHHHHHcCCC-hHHHHHHHHHHHHhcC
Confidence 34444 55666665554 67899999988888655 6778888888887666
No 87
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=20.21 E-value=3.2e+02 Score=29.56 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=43.5
Q ss_pred cCCcHHHHHHHHHHHhHHHHHHHHhccCC-ccccHHHHHHHHHHhcCChHHHHHHHHHhhhcCCeEEe
Q 017853 115 EGLTVEEAKKVLRAVKMEMVKDRLRMIER-NWIPYSEFVRVCEEACSDRELGLQFAKSLDDAGNVIVL 181 (365)
Q Consensus 115 ~~~tv~e~rkllr~~~ve~lk~~L~~~~k-~~Isy~EF~~lC~e~~~~~~eA~~~a~~Ld~SG~Vivl 181 (365)
..+|-+|++.+++.. .+++ +-+--+.|+-.|.-.|.+.+|-.-++++|-++|..+.+
T Consensus 97 ~~Lt~eE~~~ii~~i----------~~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~sg~~l~~ 154 (493)
T TIGR02645 97 AKLDQHEIASIVGDI----------VDERLSDVEISAFLTASAINGMTMDEIEALTIAMADTGEMLEW 154 (493)
T ss_pred CCCCHHHHHHHHHHH----------HcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCccC
Confidence 358888888887665 2222 33456788888888999999999999999999988743
Done!