BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017854
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 227 bits (579), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 131/169 (77%), Gaps = 17/169 (10%)
Query: 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFF 74
LPPGFRF+PTDEEL+V YL +KAA + +IAE+DLYKFDPW LP+KA FGE+EWYFF
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 76
Query: 75 SPRDRKYPNGARPNRAATSGYWKATGTDKPILTSKGNQKVGVKKALVFYGGKPPKGIKTN 134
SPRDRKYPNG+RPNR A SGYWKATGTDK I++++G Q+VG+KKALVFY GK PKG KTN
Sbjct: 77 SPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEG-QRVGIKKALVFYIGKAPKGTKTN 134
Query: 135 WIMHEYRIVDNISGTKPPPHQLPADLANKKHSLRLDDWVLCRIYKKNNA 183
WIMHEYR+++ + + S +LDDWVLCRIYKK ++
Sbjct: 135 WIMHEYRLIEP---------------SRRNGSTKLDDWVLCRIYKKQSS 168
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 227 bits (579), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 131/169 (77%), Gaps = 17/169 (10%)
Query: 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFF 74
LPPGFRF+PTDEEL+V YL +KAA + +IAE+DLYKFDPW LP+KA FGE+EWYFF
Sbjct: 20 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 79
Query: 75 SPRDRKYPNGARPNRAATSGYWKATGTDKPILTSKGNQKVGVKKALVFYGGKPPKGIKTN 134
SPRDRKYPNG+RPNR A SGYWKATGTDK I++++G Q+VG+KKALVFY GK PKG KTN
Sbjct: 80 SPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEG-QRVGIKKALVFYIGKAPKGTKTN 137
Query: 135 WIMHEYRIVDNISGTKPPPHQLPADLANKKHSLRLDDWVLCRIYKKNNA 183
WIMHEYR+++ + + S +LDDWVLCRIYKK ++
Sbjct: 138 WIMHEYRLIEP---------------SRRNGSTKLDDWVLCRIYKKQSS 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/168 (64%), Positives = 127/168 (75%), Gaps = 12/168 (7%)
Query: 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFF 74
LPPGFRFHPTD+ELV HYL +KAA LPV IIAEVDLYKFDPW+LP +A FG +EWYFF
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFF 74
Query: 75 SPRDRKYPNGARPNRAATSGYWKATGTDKPILTSKGNQKVGVKKALVFYGGKPPKGIKTN 134
+PRDRKYPNG+RPNRAA +GYWKATG DKP+ + + +G+KKALVFY GK P+G+KT+
Sbjct: 75 TPRDRKYPNGSRPNRAAGNGYWKATGADKPV--APRGRTLGIKKALVFYAGKAPRGVKTD 132
Query: 135 WIMHEYRIVDNISGTKPPPHQLPADLANKKHSLRLDDWVLCRIYKKNN 182
WIMHEYR+ D KK SLRLDDWVLCR+Y K N
Sbjct: 133 WIMHEYRLADAGRAAA----------GAKKGSLRLDDWVLCRLYNKKN 170
>pdb|2OLC|A Chain A, Crystal Structure Of 5-Methylthioribose Kinase In Complex
With Adp-2ho
pdb|2OLC|B Chain B, Crystal Structure Of 5-Methylthioribose Kinase In Complex
With Adp-2ho
pdb|2PU8|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PU8|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUI|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUI|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUL|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUL|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUN|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUN|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUP|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUP|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
Length = 397
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 275 RAIPPQFWNEASGSMASSPSRKSFL--------GDLNSGSGTATDHE 313
R + WN S + ++ +KSFL GDL++GS A++HE
Sbjct: 199 RPFVEKLWNNDSVKIEAAKLKKSFLTSAETLIHGDLHTGSIFASEHE 245
>pdb|2P3Y|A Chain A, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus.
Northeast Structural Genomics Target Vpr109
pdb|2P3Y|B Chain B, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus.
Northeast Structural Genomics Target Vpr109
Length = 491
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 87 PNRAATSGYWKATGTDK------------PILTSKGNQKVGVKKAL-VFYGGKPPKGIKT 133
P S +W T D+ P ++S+ N KV ++ V+YG KP KG +
Sbjct: 386 PANVPASNFWSTTVYDENNRLXIINDAGSPDISSRKNLKVNSDGSIDVYYGPKPVKGYEN 445
Query: 134 NWI 136
NW+
Sbjct: 446 NWV 448
>pdb|3VB9|A Chain A, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|B Chain B, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|C Chain C, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|D Chain D, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
Length = 483
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 87 PNRAATSGYWKATGTDK------------PILTSKGNQKVGVKKAL-VFYGGKPPKGIKT 133
P S +W T D+ P ++S+ N KV ++ V+YG KP KG +
Sbjct: 386 PANVPASNFWSTTVYDENNRLXIINDAGSPDISSRKNLKVNSDGSIDVYYGPKPVKGYEN 445
Query: 134 NWI 136
NW+
Sbjct: 446 NWV 448
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 7 STSSQHPQLPPGFRFHPTDEELVVHYL--------KKKAASAPLPVA--IIAE-VDLYKF 55
+++ H P G R HP +E H+L K+++ + P A I +E +++
Sbjct: 6 ASAINHTAHPAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRL 65
Query: 56 DPWELPSKATF 66
PWE+P + F
Sbjct: 66 SPWEIPRRDWF 76
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 7 STSSQHPQLPPGFRFHPTDEELVVHYL--------KKKAASAPLPVA--IIAE-VDLYKF 55
+++ H P G R HP +E H+L K+++ + P A I +E +++
Sbjct: 6 ASAINHTAHPAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRL 65
Query: 56 DPWELPSKATF 66
PWE+P + F
Sbjct: 66 SPWEIPRRDWF 76
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 7 STSSQHPQLPPGFRFHPTDEELVVHYL----------KKKAASAPLPVAIIAE-VDLYKF 55
+++ H P G R HP +E H+L + + P I +E +++
Sbjct: 6 ASAINHTAHPAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRL 65
Query: 56 DPWELPSKATF 66
PWE+P + F
Sbjct: 66 SPWEIPRRDWF 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,606,163
Number of Sequences: 62578
Number of extensions: 495282
Number of successful extensions: 859
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 11
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)