Query 017854
Match_columns 365
No_of_seqs 194 out of 974
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 06:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 4.4E-56 1.5E-60 401.5 14.3 163 9-183 9-171 (174)
2 1ut7_A No apical meristem prot 100.0 3.1E-55 1E-59 394.9 12.4 160 8-184 10-169 (171)
3 1cmb_A Met APO-repressor; DNA- 19.0 1.1E+02 0.0036 24.9 3.8 39 22-64 50-88 (104)
4 1ldd_A APC2WHB, anaphase promo 16.4 75 0.0026 24.5 2.3 27 16-43 37-64 (74)
5 3nr5_A MAF1, repressor of RNA 12.6 38 0.0013 29.9 -0.4 12 47-58 119-130 (164)
6 3dz1_A Dihydrodipicolinate syn 9.4 1.3E+02 0.0045 28.3 2.1 18 15-34 109-126 (313)
7 1f6k_A N-acetylneuraminate lya 9.1 1.3E+02 0.0044 28.0 1.8 19 15-34 106-124 (293)
8 2ehh_A DHDPS, dihydrodipicolin 8.9 1.3E+02 0.0045 27.9 1.8 28 15-44 102-129 (294)
9 2ojp_A DHDPS, dihydrodipicolin 8.9 1.3E+02 0.0045 27.9 1.8 28 15-44 103-130 (292)
10 3cpr_A Dihydrodipicolinate syn 8.7 1.3E+02 0.0044 28.2 1.7 28 15-44 118-145 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=4.4e-56 Score=401.48 Aligned_cols=163 Identities=67% Similarity=1.261 Sum_probs=137.1
Q ss_pred CCCCCCCCCCceeCCChHHHHHHHHHHhHcCCCCCcceeeecCCCCCCCCCCCccccCCCceEEEeccCCCCCCCCCCCc
Q 017854 9 SSQHPQLPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPN 88 (365)
Q Consensus 9 ~~~~~~LPpGfRF~PTDEELV~~YL~~Ki~G~plp~~iI~evDVY~~ePwdLP~~~~~ge~eWYFFspr~rK~~nG~R~~ 88 (365)
...++.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++.+||||+++++||++|.|++
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSC
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCce
Confidence 34578999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred cccCCCeeeecCCCceeecCCCceeeeeeEEEEEecCCCCCCCCcCeEEEEEEecCCCCCCCCCCCCCchhhhhcccCCC
Q 017854 89 RAATSGYWKATGTDKPILTSKGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRIVDNISGTKPPPHQLPADLANKKHSLR 168 (365)
Q Consensus 89 R~tggG~WKatG~~k~I~~~~G~~~VG~KKtLvFy~gk~p~g~KT~WvMhEY~L~~~~~~~~p~~~~lp~~~~~~~~~~~ 168 (365)
|++++||||++|++++|... +.+||+||+|+||.|++|++.||+|+||||+|.+..... ..++.+.++
T Consensus 89 R~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~----------~~~~~~~~~ 156 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAA----------AGAKKGSLR 156 (174)
T ss_dssp EEETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC---------------------C
T ss_pred eecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcc----------cccccCCCC
Confidence 99999999999999999753 579999999999999999999999999999998754211 012223456
Q ss_pred CCcEEEEEEEEeCCC
Q 017854 169 LDDWVLCRIYKKNNA 183 (365)
Q Consensus 169 ~dd~VLCRIykK~~~ 183 (365)
.++|||||||+|++.
T Consensus 157 ~~~wVlCrvf~K~~~ 171 (174)
T 3ulx_A 157 LDDWVLCRLYNKKNE 171 (174)
T ss_dssp CSSEEEEEEEESCC-
T ss_pred CCCEEEEEEEEcCCC
Confidence 799999999999763
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.1e-55 Score=394.90 Aligned_cols=160 Identities=68% Similarity=1.197 Sum_probs=132.7
Q ss_pred CCCCCCCCCCCceeCCChHHHHHHHHHHhHcCCCCCcceeeecCCCCCCCCCCCccccCCCceEEEeccCCCCCCCCCCC
Q 017854 8 TSSQHPQLPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARP 87 (365)
Q Consensus 8 ~~~~~~~LPpGfRF~PTDEELV~~YL~~Ki~G~plp~~iI~evDVY~~ePwdLP~~~~~ge~eWYFFspr~rK~~nG~R~ 87 (365)
....+..|||||||+|||||||.|||++|+.|.+++..+|+++|||.+|||+||+.+..++.+||||+++++||++|.|+
T Consensus 10 ~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~ 89 (171)
T 1ut7_A 10 DPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRP 89 (171)
T ss_dssp --CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------C
T ss_pred CcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcc
Confidence 34567899999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred ccccCCCeeeecCCCceeecCCCceeeeeeEEEEEecCCCCCCCCcCeEEEEEEecCCCCCCCCCCCCCchhhhhcccCC
Q 017854 88 NRAATSGYWKATGTDKPILTSKGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRIVDNISGTKPPPHQLPADLANKKHSL 167 (365)
Q Consensus 88 ~R~tggG~WKatG~~k~I~~~~G~~~VG~KKtLvFy~gk~p~g~KT~WvMhEY~L~~~~~~~~p~~~~lp~~~~~~~~~~ 167 (365)
+|++++||||++|++++|... +.+||+||+|+||.|+++++.||+|+||||+|...... .+..
T Consensus 90 ~R~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~---------------~~~~ 152 (171)
T 1ut7_A 90 NRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR---------------NGST 152 (171)
T ss_dssp CEEETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC---------------------
T ss_pred cccCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc---------------cCcc
Confidence 999999999999999999853 48999999999999999999999999999999875311 1122
Q ss_pred CCCcEEEEEEEEeCCCC
Q 017854 168 RLDDWVLCRIYKKNNAQ 184 (365)
Q Consensus 168 ~~dd~VLCRIykK~~~~ 184 (365)
..++|||||||+|+...
T Consensus 153 ~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 153 KLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp --CCEEEEEEEECC---
T ss_pred cCCCEEEEEEEEcCCCC
Confidence 36899999999998653
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=19.01 E-value=1.1e+02 Score=24.86 Aligned_cols=39 Identities=33% Similarity=0.435 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHHhHcCCCCCcceeeecCCCCCCCCCCCccc
Q 017854 22 HPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPSKA 64 (365)
Q Consensus 22 ~PTDEELV~~YL~~Ki~G~plp~~iI~evDVY~~ePwdLP~~~ 64 (365)
|-|.-||++.-...-..|+|||.+ .|+-+..|.++|+..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchHHH
Confidence 568889988877778899999974 688899999999753
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=16.40 E-value=75 Score=24.47 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=22.1
Q ss_pred CCCceeCC-ChHHHHHHHHHHhHcCCCCC
Q 017854 16 PPGFRFHP-TDEELVVHYLKKKAASAPLP 43 (365)
Q Consensus 16 PpGfRF~P-TDEELV~~YL~~Ki~G~plp 43 (365)
|.|+.|.. |++||- .||..|+....+.
T Consensus 37 ~~~~~~~~it~~eL~-~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLE-GYLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHH-HHHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHH-HHHHHHHhCCeEE
Confidence 66899998 999986 6999999876543
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=12.59 E-value=38 Score=29.93 Aligned_cols=12 Identities=42% Similarity=0.941 Sum_probs=10.6
Q ss_pred eeecCCCCCCCC
Q 017854 47 IAEVDLYKFDPW 58 (365)
Q Consensus 47 I~evDVY~~ePw 58 (365)
+.+||||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 577999999998
No 6
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=9.44 E-value=1.3e+02 Score=28.27 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=13.1
Q ss_pred CCCCceeCCChHHHHHHHHH
Q 017854 15 LPPGFRFHPTDEELVVHYLK 34 (365)
Q Consensus 15 LPpGfRF~PTDEELV~~YL~ 34 (365)
+||- |.||+++|+.||-.
T Consensus 109 ~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCCT--TCCSHHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHHH
Confidence 5663 55999999987643
No 7
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=9.05 E-value=1.3e+02 Score=27.95 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=14.0
Q ss_pred CCCCceeCCChHHHHHHHHH
Q 017854 15 LPPGFRFHPTDEELVVHYLK 34 (365)
Q Consensus 15 LPpGfRF~PTDEELV~~YL~ 34 (365)
+|| |-|.|++++|+.||-.
T Consensus 106 ~~P-~y~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 106 VTP-FYYKFSFPEIKHYYDT 124 (293)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHHH
Confidence 455 4488999999987643
No 8
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=8.94 E-value=1.3e+02 Score=27.92 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=17.6
Q ss_pred CCCCceeCCChHHHHHHHHHHhHcCCCCCc
Q 017854 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV 44 (365)
Q Consensus 15 LPpGfRF~PTDEELV~~YL~~Ki~G~plp~ 44 (365)
+|| |-|.||+++|+.||-. -+...++|.
T Consensus 102 ~~P-~y~~~s~~~l~~~f~~-va~a~~lPi 129 (294)
T 2ehh_A 102 VVP-YYNKPTQRGLYEHFKT-VAQEVDIPI 129 (294)
T ss_dssp ECC-CSSCCCHHHHHHHHHH-HHHHCCSCE
T ss_pred CCC-CCCCCCHHHHHHHHHH-HHHhcCCCE
Confidence 455 4488999999987743 333334553
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=8.88 E-value=1.3e+02 Score=27.86 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=17.6
Q ss_pred CCCCceeCCChHHHHHHHHHHhHcCCCCCc
Q 017854 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV 44 (365)
Q Consensus 15 LPpGfRF~PTDEELV~~YL~~Ki~G~plp~ 44 (365)
+|| |-|.||+++|+.||- .-+...++|.
T Consensus 103 ~~P-~y~~~s~~~l~~~f~-~ia~a~~lPi 130 (292)
T 2ojp_A 103 VTP-YYNRPSQEGLYQHFK-AIAEHTDLPQ 130 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH-HHHTTCSSCE
T ss_pred CCC-CCCCCCHHHHHHHHH-HHHHhcCCCE
Confidence 455 448899999998763 3333344553
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=8.67 E-value=1.3e+02 Score=28.18 Aligned_cols=28 Identities=29% Similarity=0.619 Sum_probs=17.9
Q ss_pred CCCCceeCCChHHHHHHHHHHhHcCCCCCc
Q 017854 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV 44 (365)
Q Consensus 15 LPpGfRF~PTDEELV~~YL~~Ki~G~plp~ 44 (365)
+|| |-|.|++++|+.||-. -+...++|.
T Consensus 118 ~~P-~y~~~~~~~l~~~f~~-ia~a~~lPi 145 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFGA-IAAATEVPI 145 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHHH-HHHHCCSCE
T ss_pred CCC-CCCCCCHHHHHHHHHH-HHHhcCCCE
Confidence 456 4588999999987743 333334553
Done!