Query 017855
Match_columns 365
No_of_seqs 363 out of 1998
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 06:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 3E-55 1E-59 409.0 28.1 265 69-345 7-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 1.8E-55 6.3E-60 411.6 24.3 261 73-347 5-288 (303)
3 2lck_A Mitochondrial uncouplin 100.0 1.1E-36 3.8E-41 284.4 13.9 177 70-250 105-287 (303)
4 1okc_A ADP, ATP carrier protei 100.0 3.8E-35 1.3E-39 273.1 19.0 174 68-248 111-296 (297)
5 3f2e_A SIRV coat protein; four 33.1 21 0.00073 24.8 1.9 37 97-133 1-41 (100)
6 3tgu_G UQCRQ, mitochondrial ub 26.4 65 0.0022 22.7 3.5 36 219-254 36-71 (81)
7 1pp9_G Ubiquinol-cytochrome C 19.2 1E+02 0.0036 21.6 3.4 40 216-255 33-72 (81)
8 3tgu_G UQCRQ, mitochondrial ub 17.7 1.3E+02 0.0043 21.2 3.6 34 311-345 33-66 (81)
9 2a3d_A Protein (de novo three- 14.5 1.4E+02 0.0049 19.2 2.8 14 89-102 10-23 (73)
10 4b19_A PEPA1; toxin, toxin apo 13.0 20 0.0007 20.1 -1.3 23 268-290 4-26 (30)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3e-55 Score=409.00 Aligned_cols=265 Identities=22% Similarity=0.274 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHhhhhhccchHhHHHHHHhcCC--------CCCCChHHHHHHHHHhhchhhcccchHHHHHHHHHhhHH
Q 017855 69 YAACTVGGILSCGLTHTAVTPLDLVKCNMQIDP--------VKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGAC 140 (365)
Q Consensus 69 ~~~~~~aG~~a~~~~~~i~~Pld~vKtr~Q~~~--------~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 140 (365)
++..+++|++|++++.+++||+|+||+|+|++. ..|+++++++++|+++||++|||||+.+++++.++..++
T Consensus 7 ~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 86 (297)
T 1okc_A 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHH
Confidence 456678888888888899999999999999974 268999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCcchhhhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHhcCC------CCCCChhhhHHHHHHh
Q 017855 141 KFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQP------GFARGLGDGLPKFVKS 214 (365)
Q Consensus 141 ~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~Ag~~~~~~~~Pldviktr~q~~~------~~~~~~~~~~~~i~~~ 214 (365)
+|.+||.+|+.+....+.+..........+++|++||+++.++++|+|+||+|+|++. ..|.++++++++|+++
T Consensus 87 ~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~ 166 (297)
T 1okc_A 87 NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKS 166 (297)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHh
Confidence 9999999999654322222111234466789999999999999999999999999874 3689999999999999
Q ss_pred hcccccccchHHHHHhHHhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCchhHHHHHHHHHHHHhHhHhcccHHHHHHH
Q 017855 215 EGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSF 294 (365)
Q Consensus 215 ~G~~glyrG~~~~~~r~~~~~~i~f~~ye~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~PlDviktr 294 (365)
||++|||||+.++++|.+|+++++|.+||.+++.+.+. +..+....+++|++||++++++++|+||||+|
T Consensus 167 eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----------~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr 236 (297)
T 1okc_A 167 DGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----------KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRR 236 (297)
T ss_dssp HCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----------GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCccHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 99999999999999999999999999999999865322 12346678999999999999999999999999
Q ss_pred HhccC------------ccHHHHHHHHhChhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 017855 295 LNNAK------------GATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFV 345 (365)
Q Consensus 295 ~q~~~------------~~~~~~i~~~~G~~gly~rG~~~~~~~~~~~~~i~~~iye~~~~~~ 345 (365)
||.+. .+++++|+++||++||| ||+.++++|. +.++++|.+||.+|+.+
T Consensus 237 ~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~gly-rG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 237 MMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFF-KGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGG-TTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEe-cchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99763 26899999999999999 8999999996 57899999999998753
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.8e-55 Score=411.62 Aligned_cols=261 Identities=19% Similarity=0.311 Sum_probs=234.0
Q ss_pred HHHHHHHHhhhhhccchHhHHHHHHhcCCC-----------CCCChHHHHHHHHHhhchhhcccchHHHHHHHHHhhHHH
Q 017855 73 TVGGILSCGLTHTAVTPLDLVKCNMQIDPV-----------KYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACK 141 (365)
Q Consensus 73 ~~aG~~a~~~~~~i~~Pld~vKtr~Q~~~~-----------~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 141 (365)
+++|++|++++.+++||||+||+|+|++.. .|+++++++++|+++||++|||||+.+++++.++..+++
T Consensus 5 ~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 84 (303)
T 2lck_A 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVR 84 (303)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHH
Confidence 567777778888999999999999999753 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCcchhhhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHhcCCC-----CCCChhhhHHHHHHhhc
Q 017855 142 FGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPG-----FARGLGDGLPKFVKSEG 216 (365)
Q Consensus 142 f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~Ag~~~~~~~~Pldviktr~q~~~~-----~~~~~~~~~~~i~~~~G 216 (365)
|.+||.+|+.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|++.. .|.++++++++|+++||
T Consensus 85 f~~ye~~k~~~~~~~~-----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG 159 (303)
T 2lck_A 85 IGLYDSVKQFYTKGSE-----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEG 159 (303)
T ss_dssp TTHHHHHHHHHSCCCS-----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCc-----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcC
Confidence 9999999998865311 2345677899999999999999999999999999753 68999999999999999
Q ss_pred ccccccchHHHHHhHHhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCchhHHHHHHHHHHHHhHhHhcccHHHHHHHHh
Q 017855 217 ALGLYKGIVPLWGRQIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLN 296 (365)
Q Consensus 217 ~~glyrG~~~~~~r~~~~~~i~f~~ye~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~PlDviktr~q 296 (365)
++|||||+.++++|.+|+.+++|.+||.+++.+.+.. ....+....+++|++||++++++++|+||||+|||
T Consensus 160 ~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq 231 (303)
T 2lck_A 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM 231 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT--------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999999999999998875431 11234667899999999999999999999999999
Q ss_pred ccC-------ccHHHHHHHHhChhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017855 297 NAK-------GATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 347 (365)
Q Consensus 297 ~~~-------~~~~~~i~~~~G~~gly~rG~~~~~~~~~~~~~i~~~iye~~~~~~~~ 347 (365)
.+. .+++++|+++||++||| ||+.++++|.+|.++++|.+||.+|+.+..
T Consensus 232 ~~~~~~y~~~~~~~~~i~~~eG~~gly-rG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 232 NSALGQYHSAGHCALTMLRKEGPRAFY-KGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp TCCSSSCCSHHHHHHHHHHSSCTHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred hccccccCCHHHHHHHHHHHcChHHhh-ccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 874 26899999999999999 899999999999999999999999998853
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.1e-36 Score=284.36 Aligned_cols=177 Identities=20% Similarity=0.366 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHhhhhhccchHhHHHHHHhcCCC-----CCCChHHHHHHHHHhhchhhcccchHHHHHHHHHhhHHHHHH
Q 017855 70 AACTVGGILSCGLTHTAVTPLDLVKCNMQIDPV-----KYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFGF 144 (365)
Q Consensus 70 ~~~~~aG~~a~~~~~~i~~Pld~vKtr~Q~~~~-----~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ 144 (365)
...+++|++|++++.++++|+|+||+|+|++.. .|+++++++++|+++||++|||||+.+++++.++..+++|.+
T Consensus 105 ~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ 184 (303)
T 2lck_A 105 GSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184 (303)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHH
Confidence 345677777778888999999999999999763 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhhhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHhcCC-CCCCChhhhHHHHHHhhcccccccc
Q 017855 145 YEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQP-GFARGLGDGLPKFVKSEGALGLYKG 223 (365)
Q Consensus 145 y~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~Ag~~~~~~~~Pldviktr~q~~~-~~~~~~~~~~~~i~~~~G~~glyrG 223 (365)
||.+|+.+.+.... .......+++|++||++++++++|+|+||+|||++. ..|+++++|+++|+++||++|||||
T Consensus 185 ye~~k~~l~~~~~~----~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG 260 (303)
T 2lck_A 185 YDLIKDTLLKANLM----TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKG 260 (303)
T ss_dssp HHHHHHTTTTTTSC----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSC
T ss_pred HHHHHHHHHhccCC----CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhcc
Confidence 99999988654321 223456789999999999999999999999999985 4699999999999999999999999
Q ss_pred hHHHHHhHHhhhhhHHHHHHHHHHHHH
Q 017855 224 IVPLWGRQIPYTMMKFASFETIVEMIY 250 (365)
Q Consensus 224 ~~~~~~r~~~~~~i~f~~ye~l~~~l~ 250 (365)
+.++++|.+|.++++|.+||.+|+.+.
T Consensus 261 ~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 261 FMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997654
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.8e-35 Score=273.15 Aligned_cols=174 Identities=21% Similarity=0.347 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHhhhhhccchHhHHHHHHhcCC------CCCCChHHHHHHHHHhhchhhcccchHHHHHHHHHhhHHH
Q 017855 68 FYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDP------VKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACK 141 (365)
Q Consensus 68 ~~~~~~~aG~~a~~~~~~i~~Pld~vKtr~Q~~~------~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 141 (365)
.+...+++|++|++++.++++|+|+||+|+|++. ..|+++++++++|+++||++|||||+.+++++.++..+++
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 190 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHH
Confidence 3456678888888888899999999999999974 3588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCcchhhhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHhcCCC------CCCChhhhHHHHHHhh
Q 017855 142 FGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPG------FARGLGDGLPKFVKSE 215 (365)
Q Consensus 142 f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~Ag~~~~~~~~Pldviktr~q~~~~------~~~~~~~~~~~i~~~~ 215 (365)
|.+||.+|+.+.+.. ..+....+++|++||++++++++|+|+||+|||++.. .|+++++|+++|+++|
T Consensus 191 f~~ye~~k~~~~~~~------~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~e 264 (297)
T 1okc_A 191 FGVYDTAKGMLPDPK------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDE 264 (297)
T ss_dssp HHHHHHHHHSSCGGG------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC------CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHc
Confidence 999999999775422 1234566888999999999999999999999998742 5899999999999999
Q ss_pred cccccccchHHHHHhHHhhhhhHHHHHHHHHHH
Q 017855 216 GALGLYKGIVPLWGRQIPYTMMKFASFETIVEM 248 (365)
Q Consensus 216 G~~glyrG~~~~~~r~~~~~~i~f~~ye~l~~~ 248 (365)
|++|||||+.++++|. +..+++|.+||.+++.
T Consensus 265 G~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 265 GPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp CGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred CcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 9999999999999996 5689999999998865
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=33.06 E-value=21 Score=24.79 Aligned_cols=37 Identities=22% Similarity=0.470 Sum_probs=22.4
Q ss_pred HhcCCCCCCChHHHHHHHHHhhch----hhcccchHHHHHH
Q 017855 97 MQIDPVKYKSISSGFGVLLKEQGI----RGFFRGWVPTLLG 133 (365)
Q Consensus 97 ~Q~~~~~~~~~~~~~~~i~~~eG~----~glyrG~~~~l~~ 133 (365)
||++-.++.++-+-...++.+-|+ |.+|+|++..+.+
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvar 41 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVAR 41 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHH
Confidence 577777788888888888888887 4567777665544
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=26.42 E-value=65 Score=22.73 Aligned_cols=36 Identities=3% Similarity=-0.033 Sum_probs=27.4
Q ss_pred ccccchHHHHHhHHhhhhhHHHHHHHHHHHHHhccC
Q 017855 219 GLYKGIVPLWGRQIPYTMMKFASFETIVEMIYKHAV 254 (365)
Q Consensus 219 glyrG~~~~~~r~~~~~~i~f~~ye~l~~~l~~~~~ 254 (365)
..+|-+...++..+|...+.+.+|+..++......-
T Consensus 36 N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 36 NVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445667888999999999999999988765533
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=19.18 E-value=1e+02 Score=21.62 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=29.8
Q ss_pred cccccccchHHHHHhHHhhhhhHHHHHHHHHHHHHhccCC
Q 017855 216 GALGLYKGIVPLWGRQIPYTMMKFASFETIVEMIYKHAVP 255 (365)
Q Consensus 216 G~~glyrG~~~~~~r~~~~~~i~f~~ye~l~~~l~~~~~~ 255 (365)
|+...+|-+.-.++..+|...+.+.+|+..++......-+
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rK 72 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCC
Confidence 3444556667777888999999999999999887655433
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=17.72 E-value=1.3e+02 Score=21.19 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=27.0
Q ss_pred ChhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 017855 311 GLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFV 345 (365)
Q Consensus 311 G~~gly~rG~~~~~~~~~~~~~i~~~iye~~~~~~ 345 (365)
|+...| |-+.-.+++++|..++.+.+|+..++..
T Consensus 33 ~i~N~~-RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 33 ALPNVW-RRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 555566 5667788889999999999999887765
No 9
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=14.46 E-value=1.4e+02 Score=19.20 Aligned_cols=14 Identities=21% Similarity=0.086 Sum_probs=10.5
Q ss_pred hHhHHHHHHhcCCC
Q 017855 89 PLDLVKCNMQIDPV 102 (365)
Q Consensus 89 Pld~vKtr~Q~~~~ 102 (365)
-+..||||+|.-+.
T Consensus 10 rlaaiktrlqalgg 23 (73)
T 2a3d_A 10 RLAAIKTRLQALGG 23 (73)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcC
Confidence 46678999998543
No 10
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=12.98 E-value=20 Score=20.06 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhHhHhcccHHH
Q 017855 268 GISFAGGYVAGVFCAIVSHPADN 290 (365)
Q Consensus 268 ~~~~~~g~~ag~~a~~~t~PlDv 290 (365)
++++++-.++|.+-++.+|.+|.
T Consensus 4 fv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GTSSTTTTHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHHHHHh
Confidence 44456667788888888888874
Done!