BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017856
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 10 PAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLL 69
PAG + + + L + F GW V LI A D + R +I+D P RGRV LL
Sbjct: 247 PAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALL 306
Query: 70 GDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 129
GD+ H+ P++GQGGC A+ED AV L +++ DI +AL+ YE R RV
Sbjct: 307 GDAGHSTTPDIGQGGCAAMED----AVVLGAVFRQTR------DIAAALREYEAQRCDRV 356
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 18 EGKKERLLKIFEGWCDNVVDLI-LATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAM 76
+G+ E +L F W D+ L T + IL+ + DR P+ WGRGR+TLLGD+ H M
Sbjct: 256 DGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLM 315
Query: 77 QPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARR 126
P G AI DG +LA L + D+ +AL+ YE ARR
Sbjct: 316 YPMGANGASQAILDGIELAAALARNA----------DVAAALREYEEARR 355
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 10 PAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLL 69
PAG + + + L + F GW V LI A D + R +I+D P RGRV LL
Sbjct: 247 PAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALL 306
Query: 70 GDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 129
GD+ H+ P++GQGGC A ED AV L +++ DI +AL+ YE R RV
Sbjct: 307 GDAGHSTTPDIGQGGCAAXED----AVVLGAVFRQTR------DIAAALREYEAQRCDRV 356
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 18 EGKKERLLKIFEGWCDNVVDL-ILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAM 76
+G+ E +L F W D+ L T + IL+ DR P+ WGRGR+TLLGD+ H
Sbjct: 256 DGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPXVDRDPLPHWGRGRITLLGDAAHLX 315
Query: 77 QPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARR 126
P G AI DG +LA L + D+ +AL+ YE ARR
Sbjct: 316 YPXGANGASQAILDGIELAAALARNA----------DVAAALREYEEARR 355
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 49 RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 100
R D Y+ T + +W RG+V L+GD+ HAM P L QG A+ + + L+ +LE+
Sbjct: 302 RYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE 353
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 49 RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 100
R D Y+ T + +W RG+V L+GD+ HAM P L QG A+ + + L+ +LE+
Sbjct: 266 RYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 49 RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 100
R D ++ T + +W RG+V L+GD+ HAM P L QG A+ + + L+ +LE+
Sbjct: 266 RYDKFETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 44 EEAILRRDIYDR---TPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 100
E A L+ YD+ T + +W RG+V L+GD+ HAM P L QG A+ + + L+ +LE+
Sbjct: 258 EAAKLKTARYDKAETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 49 RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 100
R D Y+ T + +W RG+V L+GD+ HA P L QG A + + L+ +LE+
Sbjct: 302 RYDKYETTKLDSWTRGKVALVGDAAHAXCPALAQGAGCAXVNAFSLSQDLEE 353
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 31 WCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 90
W ++ L+ +D E I + + W VTLLGD++H P G G A+ D
Sbjct: 278 WDPSLHTLVQQSDXENISPLHLRSXPHLLPWKSSTVTLLGDAIHNXTPXTGSGANTALRD 337
Query: 91 GYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTY 146
L +L E +V A+ YE+ R I G++ +A A +
Sbjct: 338 ALLLTQKLASVASGHEE------LVKAISDYEQQXRAYANEIVGISLRSAQNAVIH 387
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 49 RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 100
R D Y+ T + +W RG+V L+GD+ HAM P L QG A+ + + L+ +LE+
Sbjct: 266 RYDKYETTKLDSWTRGKVALVGDAAHAMAPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 61 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 120
W GRV L GD+ P G G A+ DG+ LA +L + + L +
Sbjct: 298 WREGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQAGA-------GLLDT 350
Query: 121 YERARRLRVAVIHGLARSAAVMASTYKAYL 150
YE R++ ++ +A + A+ A ++
Sbjct: 351 YEDERKVAAELV--VAEALAIYAQRMAPHM 378
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 63 RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 98
RGRV L GDS H P GQG +I+D L +L
Sbjct: 276 RGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKL 311
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 24 LLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR---VTLLGDSVHAMQPNL 80
LLK F W + +LI AT L I+ W R +T++GD+ H M P
Sbjct: 253 LLKKFSDWDERYKELIHATLSFVGLATRIFPLEK--PWKSKRPLPITMIGDAAHLMPPFA 310
Query: 81 GQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYER 123
GQG + D L+ L S I A+K+YE+
Sbjct: 311 GQGVNSGLVDALILSDNLADGKFNS--------IEEAVKNYEQ 345
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 65 RVTLLGDSVHAMQPNLGQGGCMAIED----GYQLAVELEKAC 102
RV + GD+ H P GQG +++D G++LA L K C
Sbjct: 343 RVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQC 384
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 58 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 98
+ + RGRV L GDS H P GQG ++++D L +L
Sbjct: 272 VSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKL 312
>pdb|2KB3|A Chain A, Nmr Structure Of The Phosphorylated Form Of Odhi, Podhi
Length = 143
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 270 TSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYV 306
+ I + VS+ HA +G F ++D+ S +GTYV
Sbjct: 76 SDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYV 112
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
Length = 140
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 272 IVIPSAQVSKMHARISYKDGA--FYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDT 329
I S++HA + Y +LIDL S HGT++ R+ + P + T
Sbjct: 68 FTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLG-----HIRLEPHKPQQIPIDST 122
Query: 330 IEFGSDKKA 338
+ FG+ +A
Sbjct: 123 VSFGASTRA 131
>pdb|2KB4|A Chain A, Nmr Structure Of The Unphosphorylated Form Of Odhi, Odhi
Length = 143
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 270 TSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYV 306
+ I + VS+ HA +G F ++D+ S +GTYV
Sbjct: 76 SDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYV 112
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 24 LLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR---VTLLGDSVHAMQPNL 80
LLK F W + +LI T L I+ W R +T++GD+ H M P
Sbjct: 273 LLKEFSDWDERYKELIHTTLSFVGLATRIFPLEK--PWKSKRPLPITMIGDAAHLMPPFA 330
Query: 81 GQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYER 123
GQG + D L+ L S I A+K+YE+
Sbjct: 331 GQGVNSGLVDALILSDNLADGKFNS--------IEEAVKNYEQ 365
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 24 LLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR---VTLLGDSVHAMQPNL 80
LLK F W + +LI T L I+ W R +T++GD+ H M P
Sbjct: 273 LLKEFSDWDERYKELIHTTLSFVGLATRIFPLEK--PWKSKRPLPITMIGDAAHLMPPFA 330
Query: 81 GQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYER 123
GQG + D L+ L S I A+K+YE+
Sbjct: 331 GQGVNSGLVDALILSDNLADGKFNS--------IEEAVKNYEQ 365
>pdb|2XT9|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 115
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 270 TSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVT 307
+ I + VS+ HA + G F ++D+ S +GTYV
Sbjct: 41 SDIFLDDVTVSRRHAEFRLEGGEFQVVDVGSLNGTYVN 78
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 66 VTLLGDSVHAMQPNLGQGGCMAIE 89
V +LGD++H + P GQG +AIE
Sbjct: 288 VAMLGDAIHNVHPITGQGMNLAIE 311
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 24 LLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR---VTLLGDSVHAMQPNL 80
LLK F W +LI T L I+ W R +T++GD+ H M P
Sbjct: 273 LLKEFSDWDKRYKELIHTTLSFVGLATRIFPLEK--PWKSKRPLPITMIGDAAHLMPPFA 330
Query: 81 GQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYER 123
GQG + D L+ L S I A+K+YE+
Sbjct: 331 GQGVNSGLVDALILSDNLADGKFNS--------IEEAVKNYEQ 365
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 65 RVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERA 124
RV + GD+ H P GQG ++ D Y L +L + +K I LK+YE
Sbjct: 352 RVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKL--GLVLTGRAKRDI-----LKTYEEE 404
Query: 125 RR 126
R+
Sbjct: 405 RQ 406
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 20 KKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPN 79
K E L K F N + +A + R ++ GRV L+GD+ +P+
Sbjct: 265 KGESLFKPFRDLVLNASSPFVTVVADATVDRMVH----------GRVLLIGDAAVTPRPH 314
Query: 80 LGQGGCMAIEDGYQLA 95
GG A +D LA
Sbjct: 315 AAAGGAKASDDARTLA 330
>pdb|2KKL|A Chain A, Solution Nmr Structure Of Fha Domain Of Mb1858 From
Mycobacterium Bovis. Northeast Structural Genomics
Consortium Target Mbr243c (24-155)
Length = 140
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 270 TSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVT 307
+ I + VS+ HA ++ F ++D+ S +GTYV
Sbjct: 62 SDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVN 99
>pdb|2KFU|A Chain A, Pknb-Phosphorylated Rv1827
Length = 162
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 270 TSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYV 306
+ I + VS+ HA ++ F ++D+ S +GTYV
Sbjct: 85 SDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYV 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,269,374
Number of Sequences: 62578
Number of extensions: 474603
Number of successful extensions: 1013
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 989
Number of HSP's gapped (non-prelim): 28
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)