Query 017856
Match_columns 365
No_of_seqs 456 out of 3286
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02927 antheraxanthin epoxid 100.0 1.4E-67 3E-72 543.8 37.5 364 1-365 304-668 (668)
2 TIGR03219 salicylate_mono sali 99.9 1E-21 2.2E-26 195.7 15.2 121 17-145 255-375 (414)
3 PRK06753 hypothetical protein; 99.8 2.4E-20 5.3E-25 182.9 14.6 132 2-144 208-339 (373)
4 PRK08163 salicylate hydroxylas 99.8 7.4E-20 1.6E-24 180.9 14.8 116 18-144 242-357 (396)
5 PRK06475 salicylate hydroxylas 99.8 8.6E-20 1.9E-24 181.1 14.7 110 18-140 248-357 (400)
6 PRK07236 hypothetical protein; 99.8 7.4E-20 1.6E-24 180.7 13.5 113 20-144 263-376 (386)
7 PRK07538 hypothetical protein; 99.8 1.9E-19 4E-24 179.4 13.6 126 2-139 229-362 (413)
8 PRK07588 hypothetical protein; 99.8 2E-19 4.3E-24 177.8 10.9 119 17-144 232-350 (391)
9 PRK06847 hypothetical protein; 99.8 4.1E-19 8.9E-24 174.2 13.0 115 19-143 235-351 (375)
10 PF00498 FHA: FHA domain; Int 99.8 1.3E-18 2.7E-23 129.5 8.2 67 257-333 1-68 (68)
11 PRK05868 hypothetical protein; 99.8 2.3E-18 5.1E-23 169.4 12.1 109 18-138 236-347 (372)
12 PRK07045 putative monooxygenas 99.8 6.7E-18 1.5E-22 166.7 13.1 121 19-146 239-361 (388)
13 PRK05714 2-octaprenyl-3-methyl 99.7 7.3E-18 1.6E-22 167.4 11.0 106 48-165 270-375 (405)
14 KOG2614 Kynurenine 3-monooxyge 99.7 1.2E-17 2.6E-22 160.9 9.9 128 2-129 217-361 (420)
15 TIGR02360 pbenz_hydroxyl 4-hyd 99.7 4.6E-17 1E-21 161.2 13.7 80 58-145 273-352 (390)
16 PRK06617 2-octaprenyl-6-methox 99.7 1.1E-17 2.4E-22 164.6 6.6 98 46-165 256-353 (374)
17 PRK06183 mhpA 3-(3-hydroxyphen 99.7 8.8E-17 1.9E-21 165.6 12.2 111 20-144 247-359 (538)
18 PRK08132 FAD-dependent oxidore 99.7 1.6E-16 3.4E-21 164.1 13.6 107 31-144 264-372 (547)
19 PRK08849 2-octaprenyl-3-methyl 99.7 4.9E-17 1.1E-21 160.6 9.3 95 55-165 270-364 (384)
20 PRK06996 hypothetical protein; 99.7 9.4E-17 2E-21 159.3 10.4 85 50-145 278-362 (398)
21 PRK08255 salicylyl-CoA 5-hydro 99.7 7.8E-17 1.7E-21 172.0 9.3 136 17-164 219-358 (765)
22 PRK08243 4-hydroxybenzoate 3-m 99.7 5.1E-16 1.1E-20 153.7 12.0 80 58-145 273-352 (392)
23 PRK08773 2-octaprenyl-3-methyl 99.7 2.2E-16 4.8E-21 156.1 8.9 105 49-165 268-372 (392)
24 PRK06184 hypothetical protein; 99.7 3.2E-16 7E-21 160.1 10.0 78 58-143 275-352 (502)
25 PRK08013 oxidoreductase; Provi 99.6 4.6E-16 1E-20 154.5 9.9 90 50-144 269-358 (400)
26 PRK07494 2-octaprenyl-6-methox 99.6 2.7E-16 5.8E-21 155.2 7.0 104 47-165 264-367 (388)
27 PRK06185 hypothetical protein; 99.6 1.3E-15 2.8E-20 151.2 11.7 119 19-144 239-358 (407)
28 PRK06834 hypothetical protein; 99.6 1.8E-15 3.8E-20 154.1 12.9 79 58-143 259-337 (488)
29 PRK08850 2-octaprenyl-6-methox 99.6 7.8E-16 1.7E-20 153.0 9.7 90 50-144 269-358 (405)
30 PF01494 FAD_binding_3: FAD bi 99.6 1.3E-15 2.9E-20 146.7 11.0 82 47-136 275-356 (356)
31 PRK07364 2-octaprenyl-6-methox 99.6 1.2E-15 2.6E-20 151.8 9.7 91 49-144 280-370 (415)
32 PRK08244 hypothetical protein; 99.6 9.6E-16 2.1E-20 156.2 9.0 79 58-143 266-344 (493)
33 PRK06126 hypothetical protein; 99.6 7.2E-16 1.6E-20 159.0 8.1 82 55-143 294-375 (545)
34 COG0654 UbiH 2-polyprenyl-6-me 99.6 6.8E-16 1.5E-20 152.7 6.9 79 59-144 273-351 (387)
35 PRK07333 2-octaprenyl-6-methox 99.6 1.9E-15 4.1E-20 149.7 10.0 84 57-144 273-356 (403)
36 PRK08294 phenol 2-monooxygenas 99.6 2.8E-15 6.2E-20 156.9 11.5 78 61-145 337-414 (634)
37 PLN02985 squalene monooxygenas 99.6 7E-15 1.5E-19 150.4 14.0 117 22-143 278-401 (514)
38 PRK08020 ubiF 2-octaprenyl-3-m 99.6 2.3E-15 5E-20 148.7 9.6 105 49-165 267-371 (391)
39 TIGR01989 COQ6 Ubiquinone bios 99.6 2.3E-15 5E-20 151.3 9.4 91 49-144 319-409 (437)
40 PTZ00367 squalene epoxidase; P 99.6 2.3E-14 5E-19 147.8 14.3 123 21-144 292-422 (567)
41 TIGR01984 UbiH 2-polyprenyl-6- 99.6 2.7E-15 5.8E-20 147.6 7.0 90 47-144 260-349 (382)
42 PRK07608 ubiquinone biosynthes 99.6 5.9E-15 1.3E-19 145.4 8.3 82 58-144 274-355 (388)
43 PRK09126 hypothetical protein; 99.6 6.8E-15 1.5E-19 145.3 8.7 92 48-144 265-356 (392)
44 TIGR01988 Ubi-OHases Ubiquinon 99.6 1.2E-14 2.6E-19 142.7 10.3 93 47-144 260-352 (385)
45 cd00060 FHA Forkhead associate 99.6 5.5E-14 1.2E-18 112.0 11.8 98 231-343 2-101 (102)
46 PRK05732 2-octaprenyl-6-methox 99.5 7.7E-15 1.7E-19 144.9 8.1 83 58-144 276-358 (395)
47 PRK07190 hypothetical protein; 99.5 1.6E-14 3.5E-19 146.9 9.7 78 58-142 268-346 (487)
48 TIGR03354 VI_FHA type VI secre 99.5 5.5E-14 1.2E-18 138.6 11.5 85 243-345 16-104 (396)
49 COG1716 FOG: FHA domain [Signa 99.4 1.7E-12 3.6E-17 115.8 9.5 71 254-336 88-158 (191)
50 KOG1882 Transcriptional regula 99.3 1.8E-12 4E-17 115.6 6.4 105 216-335 161-278 (293)
51 smart00240 FHA Forkhead associ 99.3 5.4E-12 1.2E-16 88.3 4.8 48 257-309 1-50 (52)
52 COG3456 Predicted component of 99.2 2.3E-11 5E-16 117.2 8.1 79 254-346 25-106 (430)
53 KOG1881 Anion exchanger adapto 99.0 3E-10 6.6E-15 115.3 2.9 81 254-345 176-267 (793)
54 PF08491 SE: Squalene epoxidas 98.9 1.5E-08 3.3E-13 94.5 11.7 114 21-139 86-201 (276)
55 TIGR02032 GG-red-SF geranylger 98.8 3.8E-09 8.1E-14 99.5 5.3 47 52-98 249-295 (295)
56 KOG1880 Nuclear inhibitor of p 98.7 7.6E-09 1.7E-13 95.4 4.2 81 254-344 37-119 (337)
57 KOG3855 Monooxygenase involved 98.7 1.6E-08 3.4E-13 98.0 5.2 83 59-145 365-447 (481)
58 TIGR02023 BchP-ChlP geranylger 98.7 9E-08 1.9E-12 94.8 10.2 76 57-140 257-332 (388)
59 PLN00093 geranylgeranyl diphos 98.5 4.1E-07 8.9E-12 91.9 10.2 81 58-142 303-383 (450)
60 PRK11445 putative oxidoreducta 98.5 1.4E-07 3E-12 92.2 6.5 58 61-130 261-318 (351)
61 TIGR01790 carotene-cycl lycope 98.5 3.6E-07 7.9E-12 90.1 8.6 64 60-131 258-321 (388)
62 TIGR02028 ChlP geranylgeranyl 98.5 7.4E-07 1.6E-11 88.7 10.4 81 58-142 264-344 (398)
63 TIGR01789 lycopene_cycl lycope 98.2 1.7E-06 3.7E-11 85.3 5.7 65 60-133 246-311 (370)
64 KOG0615 Serine/threonine prote 97.9 2.6E-05 5.6E-10 75.9 6.2 86 244-344 57-157 (475)
65 TIGR02500 type_III_yscD type I 97.7 0.0002 4.3E-09 71.6 9.3 77 243-335 12-89 (410)
66 PRK10015 oxidoreductase; Provi 97.4 0.00092 2E-08 67.3 10.3 103 19-128 249-355 (429)
67 KOG0245 Kinesin-like protein [ 97.3 0.0008 1.7E-08 71.8 8.0 80 254-345 476-557 (1221)
68 PRK10157 putative oxidoreducta 97.2 0.0014 3.1E-08 65.8 8.9 104 19-129 249-356 (428)
69 KOG1892 Actin filament-binding 97.0 0.0016 3.5E-08 68.9 7.3 95 233-343 360-454 (1629)
70 KOG2293 Daxx-interacting prote 97.0 0.0024 5.1E-08 64.0 7.5 83 254-345 447-532 (547)
71 COG0644 FixC Dehydrogenases (f 96.8 0.0098 2.1E-07 59.1 10.9 68 61-137 266-333 (396)
72 TIGR01663 PNK-3'Pase polynucle 96.4 0.014 2.9E-07 60.2 8.6 85 231-335 15-101 (526)
73 KOG1298 Squalene monooxygenase 96.2 0.03 6.4E-07 54.8 9.5 112 21-137 282-395 (509)
74 PF04820 Trp_halogenase: Trypt 95.7 0.019 4E-07 58.3 6.2 67 61-137 313-379 (454)
75 PLN02697 lycopene epsilon cycl 95.7 0.055 1.2E-06 55.9 9.3 68 63-130 371-441 (529)
76 KOG0241 Kinesin-like protein [ 94.4 0.13 2.8E-06 55.2 7.6 102 228-347 443-545 (1714)
77 PLN02463 lycopene beta cyclase 90.4 0.55 1.2E-05 47.6 6.0 43 62-104 292-334 (447)
78 PF05834 Lycopene_cycl: Lycope 67.9 8.5 0.00018 37.9 4.9 39 62-100 252-290 (374)
79 PF13275 S4_2: S4 domain; PDB: 63.5 6.1 0.00013 28.9 2.2 32 302-342 33-64 (65)
80 PRK11507 ribosome-associated p 60.8 13 0.00028 27.6 3.5 28 302-335 37-64 (70)
81 COG2501 S4-like RNA binding pr 58.1 19 0.00041 26.9 4.0 29 301-335 36-64 (73)
82 PF04710 Pellino: Pellino; In 44.3 75 0.0016 31.6 6.8 102 256-363 97-237 (416)
83 PF10819 DUF2564: Protein of u 41.7 42 0.00091 25.4 3.6 33 68-100 18-51 (79)
84 PRK01777 hypothetical protein; 34.7 35 0.00075 26.9 2.4 29 300-335 48-76 (95)
85 cd01764 Urm1 Urm1-like ubuitin 34.5 32 0.0007 26.9 2.2 28 304-334 62-89 (94)
86 PRK15367 type III secretion sy 32.3 1.4E+02 0.0031 29.7 6.7 73 242-335 15-87 (395)
87 COG1188 Ribosome-associated he 32.3 76 0.0016 25.2 3.9 34 304-345 36-69 (100)
88 PF01479 S4: S4 domain; Inter 31.4 30 0.00064 22.9 1.4 24 301-330 25-48 (48)
89 KOG3842 Adaptor protein Pellin 30.2 1.2E+02 0.0026 29.2 5.6 32 329-363 219-250 (429)
90 cd00754 MoaD Ubiquitin domain 29.7 46 0.00099 24.5 2.3 27 301-334 49-75 (80)
91 TIGR01687 moaD_arch MoaD famil 29.5 41 0.0009 25.4 2.1 26 304-334 58-83 (88)
92 PRK06944 sulfur carrier protei 29.4 38 0.00082 24.0 1.7 12 321-332 47-58 (65)
93 CHL00037 petA cytochrome f 29.1 2.1E+02 0.0045 27.4 6.9 54 276-335 207-261 (320)
94 smart00363 S4 S4 RNA-binding d 28.5 69 0.0015 21.2 2.9 28 301-334 25-52 (60)
95 TIGR01683 thiS thiamine biosyn 28.5 41 0.00088 24.0 1.7 12 321-332 46-57 (64)
96 cd04089 eRF3_II eRF3_II: domai 27.3 1.3E+02 0.0028 22.4 4.5 33 302-344 13-45 (82)
97 TIGR02988 YaaA_near_RecF S4 do 27.1 63 0.0014 22.5 2.5 24 303-332 35-58 (59)
98 PRK05659 sulfur carrier protei 26.3 40 0.00087 24.0 1.4 23 302-332 37-59 (66)
99 PRK06488 sulfur carrier protei 25.4 42 0.00091 24.0 1.4 12 321-332 47-58 (65)
100 PF02626 AHS2: Allophanate hyd 24.9 96 0.0021 29.3 4.0 32 299-335 52-83 (271)
101 PRK08053 sulfur carrier protei 24.9 48 0.001 23.8 1.6 13 320-332 47-59 (66)
102 PRK06437 hypothetical protein; 24.7 72 0.0016 23.1 2.5 22 304-332 39-60 (67)
103 smart00797 AHS2 Allophanate hy 24.4 1.7E+02 0.0036 27.8 5.5 32 300-336 53-84 (280)
104 COG1984 DUR1 Allophanate hydro 24.1 1.9E+02 0.0041 27.9 5.8 47 284-336 59-105 (314)
105 cd00565 ThiS ThiaminS ubiquiti 23.2 70 0.0015 22.8 2.2 12 321-332 47-58 (65)
106 PF05123 S_layer_N: S-layer li 22.8 2.2E+02 0.0047 27.2 5.9 46 282-335 240-285 (290)
107 PF14478 DUF4430: Domain of un 22.2 59 0.0013 23.5 1.6 12 321-332 56-67 (68)
108 cd04486 YhcR_OBF_like YhcR_OBF 21.7 1.5E+02 0.0032 22.2 3.8 35 291-335 16-56 (78)
109 PRK06083 sulfur carrier protei 21.4 50 0.0011 25.3 1.1 24 301-332 54-77 (84)
110 PF12538 FtsK_SpoIIIE_N: DNA t 21.2 2.7E+02 0.0059 22.3 5.5 39 244-291 11-49 (113)
111 TIGR00724 urea_amlyse_rel biot 20.8 2.3E+02 0.0049 27.4 5.7 33 299-336 74-107 (314)
112 PF02597 ThiS: ThiS family; I 20.0 55 0.0012 23.7 1.1 25 303-332 45-70 (77)
No 1
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=1.4e-67 Score=543.83 Aligned_cols=364 Identities=70% Similarity=1.234 Sum_probs=329.0
Q ss_pred CEEEEEeeCCCCCCCCCcchHHHHHHHhcCCCHHHHHHHHcCCccceEEeeeeccCCCCCccCCCEEEecccccccCCCC
Q 017856 1 MQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNL 80 (365)
Q Consensus 1 ~~W~~~~~~~~~~~~~~~~~~e~l~~~~~~w~p~~~~li~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~ 80 (365)
++||+++..|....+.++..++++++.|++|++.+.++|+.++++.+..+++|+..+..+|++|||+|+|||||+|+|+.
T Consensus 304 ~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~ 383 (668)
T PLN02927 304 MQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNM 383 (668)
T ss_pred EEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCcc
Confidence 46888877765434456678999999999999999999998876678899999998888999999999999999999999
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcCCCChhHHh
Q 017856 81 GQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFL 160 (365)
Q Consensus 81 GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
|||+|+|||||++|+++|.+..+.....+...++..+|+.||++|++|+..++..+++...+...++.|++.+.+|..|+
T Consensus 384 GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~ 463 (668)
T PLN02927 384 GQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFL 463 (668)
T ss_pred ccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999988754322222334688999999999999999999999999999999999999889999999
Q ss_pred hhccCCCCcccccchhhhhhhhHHHHHHhhccCCccCCCCCCcCCCcccccchhhccCCchHHhhccCCcEEEEEcCCCC
Q 017856 161 TKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSEN 240 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~l~~~l~~~~ale~~~~~~w~l~~~~~~~ 240 (365)
+.+.||+|++..++++.+..||.|++|+++++++.++|+.+.|.++||+++.+..|+++|+|+|++..++|||+|.++.+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~ 543 (668)
T PLN02927 464 TKFRVPHPGRVGGRFFVDIAMPLMLDWVLGGNSEKLEGRPPSCRLTDKADDRLREWFEDDDALERTIKGEWYLIPHGDDC 543 (668)
T ss_pred HhcCCCCCCceeeeeeeecccHHHhhhhhcCCccccCCCCCccccccchhHHHHHHhcccHHHHHhhcCCeEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CccccEEEeecCCCCCEEEcCCCCCCCCcceEEeCCccccccceEEEEECCEEEEEEcCCCccceeeCCCCceeeecCCC
Q 017856 241 VVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNF 320 (365)
Q Consensus 241 ~~~~~i~l~~~~~~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~~~~~~i~Dl~S~nGT~vng~~~~~~~l~~~~ 320 (365)
...++|+|. ++++.+++|||.++.+.++..|+|+++.||+.||+|.++++.|+|+||+|+||||||+++|+++++.|+.
T Consensus 544 ~~~~~~~l~-~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~ 622 (668)
T PLN02927 544 CVSETLCLT-KDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNEGRRYRATPNF 622 (668)
T ss_pred cccceeeee-cCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECCEEEEEECCCCCccEEeCCCCceEecCCCC
Confidence 777899998 8889999999999944444446999999999999999999999999999999999999999999999999
Q ss_pred cEEeCCCCEEEECCCceeEEEEEEecCCCCCCcccccc-ccccccC
Q 017856 321 PARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEA-GEILQAV 365 (365)
Q Consensus 321 ~~~L~~Gd~I~~G~~~~~~f~~~~~~~~p~~~~~~~~~-~~~~~~~ 365 (365)
++.|++||+|+||+.++..|+++...++|..+.++++. .++||++
T Consensus 623 ~~~l~~~d~I~~g~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (668)
T PLN02927 623 PARFRSSDIIEFGSDKKAAFRVKVIRKTPKSTRKNESNNDKLLQTA 668 (668)
T ss_pred ceEeCCCCEEEeCCCcceeEEEEeecCCCcchhhcccchhhhhhcC
Confidence 99999999999999877889999999999887344433 5899886
No 2
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.87 E-value=1e-21 Score=195.67 Aligned_cols=121 Identities=28% Similarity=0.431 Sum_probs=104.8
Q ss_pred CcchHHHHHHHhcCCCHHHHHHHHcCCccceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHH
Q 017856 17 PEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAV 96 (365)
Q Consensus 17 ~~~~~e~l~~~~~~w~p~~~~li~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~ 96 (365)
....++++++.|.+|+|.+.++++.+++ ...+.+++..++++|++|||+|||||||+|+|+.|||+|+|||||++|++
T Consensus 255 ~~~~~~~l~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~ 332 (414)
T TIGR03219 255 REATQREMLDAFAGWGDAARALLECIPA--PTLWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLAR 332 (414)
T ss_pred CccCHHHHHHHhcCCCHHHHHHHHhCCC--CCceeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHH
Confidence 3456889999999999999999988764 34577888888899999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017856 97 ELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAST 145 (365)
Q Consensus 97 ~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~ 145 (365)
+|..... ...+++.+|+.||++|++|+..+++.|+....+++.
T Consensus 333 ~L~~~~~------~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~ 375 (414)
T TIGR03219 333 LLGDTEL------EAGDLPALLEAYDDVRRPRACRVQRTSREAGELYEL 375 (414)
T ss_pred HHHhhcc------CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC
Confidence 9986421 134689999999999999999999999987776553
No 3
>PRK06753 hypothetical protein; Provisional
Probab=99.84 E-value=2.4e-20 Score=182.91 Aligned_cols=132 Identities=30% Similarity=0.457 Sum_probs=108.0
Q ss_pred EEEEEeeCCCCCCCCCcchHHHHHHHhcCCCHHHHHHHHcCCccceEEeeeeccCCCCCccCCCEEEecccccccCCCCc
Q 017856 2 QWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLG 81 (365)
Q Consensus 2 ~W~~~~~~~~~~~~~~~~~~e~l~~~~~~w~p~~~~li~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~G 81 (365)
+|++....+..........++++.+.|++|.+.+.++++..++..+..+++++..++++|+.|||+|||||||+|+|+.|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~G 287 (373)
T PRK06753 208 YWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMG 287 (373)
T ss_pred EEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcC
Confidence 56655432222112233457889999999999999999877655566778888888889999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017856 82 QGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 144 (365)
Q Consensus 82 qG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~ 144 (365)
||+|+||+||+.|+++|.. .+++++|+.|++.|++++..++..|+....+++
T Consensus 288 qG~n~ai~Da~~L~~~L~~-----------~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 339 (373)
T PRK06753 288 QGAGQAMEDAIVLANCLNA-----------YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQ 339 (373)
T ss_pred ccHHHHHHHHHHHHHHhhh-----------ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHh
Confidence 9999999999999999953 246899999999999999999999998777665
No 4
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.83 E-value=7.4e-20 Score=180.90 Aligned_cols=116 Identities=35% Similarity=0.511 Sum_probs=100.4
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHcCCccceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHH
Q 017856 18 EGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVE 97 (365)
Q Consensus 18 ~~~~e~l~~~~~~w~p~~~~li~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~ 97 (365)
...++++.+.|.+|.|.+.++++... .+..+.+++..++++|+.|||+|+|||||+|+|+.|||+|+||+||++|+++
T Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~ 319 (396)
T PRK08163 242 DGSKEEVLSYFEGIHPRPRQMLDKPT--SWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKA 319 (396)
T ss_pred CCCHHHHHHHHcCCChHHHHHHhcCC--ceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHH
Confidence 44678899999999999999997654 3455667777788899999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017856 98 LEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 144 (365)
Q Consensus 98 L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~ 144 (365)
|... ..+++.+|+.|+++|++|+..++..++....+++
T Consensus 320 L~~~---------~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~ 357 (396)
T PRK08163 320 LEGC---------DGDAEAAFALYESVRIPRTARVVLSAREMGRIYH 357 (396)
T ss_pred HHhc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhC
Confidence 9753 2357899999999999999999999998776654
No 5
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.82 E-value=8.6e-20 Score=181.12 Aligned_cols=110 Identities=29% Similarity=0.460 Sum_probs=94.8
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHcCCccceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHH
Q 017856 18 EGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVE 97 (365)
Q Consensus 18 ~~~~e~l~~~~~~w~p~~~~li~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~ 97 (365)
...++++.+.|++|.+.+..+++.++ .+..+++++..+...|++|||+|||||||+|+|+.|||+|+|||||++|+++
T Consensus 248 ~~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~ 325 (400)
T PRK06475 248 TGDKAHLKSIYADWNKPVLQILAAID--EWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEA 325 (400)
T ss_pred CCCHHHHHHHhcCCChHHHHHHhcCC--ceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHH
Confidence 34578999999999999999998776 3456788877665566789999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 98 LEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 140 (365)
Q Consensus 98 L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~ 140 (365)
|.. .++..+|+.|++.|+++++.++..++...
T Consensus 326 L~~-----------~~~~~aL~~Ye~~R~~r~~~~~~~s~~~~ 357 (400)
T PRK06475 326 LDS-----------DDQSAGLKRFDSVRKERIAAVAKRGQLNR 357 (400)
T ss_pred Hhc-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 953 14679999999999999999999887443
No 6
>PRK07236 hypothetical protein; Provisional
Probab=99.82 E-value=7.4e-20 Score=180.70 Aligned_cols=113 Identities=27% Similarity=0.262 Sum_probs=93.9
Q ss_pred hHHHHHHHhcC-CCHHHHHHHHcCCccceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHH
Q 017856 20 KKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 98 (365)
Q Consensus 20 ~~e~l~~~~~~-w~p~~~~li~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L 98 (365)
..+++.+.+.. |.|.+.++++.++. ...+++++.. .++|..|||+|||||||+|+|+.|||+|+||+||++|+++|
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L 339 (386)
T PRK07236 263 VLAELRDDAAELLAPVFAELVEATAQ--PFVQAIFDLE-VPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEAL 339 (386)
T ss_pred HHHHHHHHHHHhcCHHHHHHHhhCcC--chhhhhhccc-CcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 45666666665 89999999988763 3345666654 47899999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017856 99 EKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 144 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~ 144 (365)
... ..++..+|+.|++.|++|+..++..|+..+....
T Consensus 340 ~~~---------~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~ 376 (386)
T PRK07236 340 AAA---------AGDIDAALAAWEAERLAVGAAIVARGRRLGARLQ 376 (386)
T ss_pred Hhc---------ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 764 1247899999999999999999999997666543
No 7
>PRK07538 hypothetical protein; Provisional
Probab=99.81 E-value=1.9e-19 Score=179.44 Aligned_cols=126 Identities=37% Similarity=0.450 Sum_probs=102.8
Q ss_pred EEEEEeeCCCC-----CCCCCcchHHHHHHHhcCCCHH---HHHHHHcCCccceEEeeeeccCCCCCccCCCEEEecccc
Q 017856 2 QWYAFHKEPAG-----GVDGPEGKKERLLKIFEGWCDN---VVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSV 73 (365)
Q Consensus 2 ~W~~~~~~~~~-----~~~~~~~~~e~l~~~~~~w~p~---~~~li~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAA 73 (365)
+|++....+.. .....+...+++++.|.+|.+. +.+++..+. .+..+++++..++++|+.|||+||||||
T Consensus 229 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~p~~~~~~~~~w~~grv~LvGDAA 306 (413)
T PRK07538 229 NWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAE--AIYEYPMVDRDPLPRWTRGRVTLLGDAA 306 (413)
T ss_pred EEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCc--ceeeccccccCCCCcccCCcEEEEeecc
Confidence 57766654321 1123455678899999998653 667787554 4677899998888999999999999999
Q ss_pred cccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 74 HAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 139 (365)
Q Consensus 74 H~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~ 139 (365)
|+|+|+.|||+|+||+||.+|+++|... .+++++|+.||++|++++..++..++..
T Consensus 307 H~~~P~~GqG~~~Ai~Da~~La~~L~~~----------~~~~~aL~~Ye~~R~~~~~~~~~~s~~~ 362 (413)
T PRK07538 307 HPMYPVGSNGASQAILDARALADALAAH----------GDPEAALAAYEAERRPATAQIVLANRLN 362 (413)
T ss_pred CcCCCCCcccHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhHHHHHHHHHhhhc
Confidence 9999999999999999999999999763 2468999999999999999999888863
No 8
>PRK07588 hypothetical protein; Provisional
Probab=99.80 E-value=2e-19 Score=177.81 Aligned_cols=119 Identities=29% Similarity=0.338 Sum_probs=90.3
Q ss_pred CcchHHHHHHHhcCCCHHHHHHHHcCCccceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHH
Q 017856 17 PEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAV 96 (365)
Q Consensus 17 ~~~~~e~l~~~~~~w~p~~~~li~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~ 96 (365)
++..++.+.+.|.+|.+....+++..+......+..+....+++|++|||+|+|||||+|+|+.|||+|+||+||++|++
T Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~ 311 (391)
T PRK07588 232 PAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAG 311 (391)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHH
Confidence 34557778899998866555555433221111122233345678999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017856 97 ELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 144 (365)
Q Consensus 97 ~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~ 144 (365)
+|... ..++..+|+.|++.|++++..++..++...++++
T Consensus 312 ~L~~~---------~~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~ 350 (391)
T PRK07588 312 ELARA---------GGDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFA 350 (391)
T ss_pred HHHhc---------cCCHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 99753 1246889999999999999999999887655543
No 9
>PRK06847 hypothetical protein; Provisional
Probab=99.80 E-value=4.1e-19 Score=174.24 Aligned_cols=115 Identities=27% Similarity=0.376 Sum_probs=91.8
Q ss_pred chHHHHHHHhcCCCH-HHHHHHHcCC-ccceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHH
Q 017856 19 GKKERLLKIFEGWCD-NVVDLILATD-EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAV 96 (365)
Q Consensus 19 ~~~e~l~~~~~~w~p-~~~~li~~~~-~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~ 96 (365)
...+.+.+.+..|.+ .+..+++... ...+..++++......+|++|||+|||||||+|+|+.|||+|+|||||+.|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~ 314 (375)
T PRK06847 235 TLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAE 314 (375)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHH
Confidence 345677888888976 4555554332 22344556666555568999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 97 ELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMA 143 (365)
Q Consensus 97 ~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~ 143 (365)
+|... .+++++|+.|+++|++|+..+++.|+..+.+.
T Consensus 315 ~L~~~----------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~ 351 (375)
T PRK06847 315 ELARH----------DSLEAALQAYYARRWERCRMVVEASARIGRIE 351 (375)
T ss_pred HHhhC----------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 99752 35689999999999999999999999776654
No 10
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.77 E-value=1.3e-18 Score=129.47 Aligned_cols=67 Identities=39% Similarity=0.724 Sum_probs=62.7
Q ss_pred EEEcCCCCCCCCcceEEeCCccccccceEEEEECC-EEEEEEcCCCccceeeCCCCceeeecCCCcEEeCCCCEEEEC
Q 017856 257 YLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG-AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 333 (365)
Q Consensus 257 ~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~~~-~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G 333 (365)
++|||++. |||+++++.|||.||.|.++++ .|+|+|++|+|||||||. ++.++.++.|++||+|.||
T Consensus 1 ~~iGR~~~-----~di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~-----~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPD-----CDIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQ-----RLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTT-----SSEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTE-----EESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCC-----CCEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCE-----EcCCCCEEECCCCCEEEcC
Confidence 58999988 9999999999999999999988 999999999999999999 9999999999999999998
No 11
>PRK05868 hypothetical protein; Validated
Probab=99.77 E-value=2.3e-18 Score=169.41 Aligned_cols=109 Identities=26% Similarity=0.345 Sum_probs=86.5
Q ss_pred cchHHHHHHHhc--CCC-HHHHHHHHcCCccceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHH
Q 017856 18 EGKKERLLKIFE--GWC-DNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQL 94 (365)
Q Consensus 18 ~~~~e~l~~~~~--~w~-p~~~~li~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~L 94 (365)
+..++++.+.|. +|. +.+.+++...+ .+ .++.....++++|++|||+|+|||||+|+|+.|||+|+|||||++|
T Consensus 236 ~~~~~~l~~~f~~~~w~~~~l~~~~~~~~--~~-~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~L 312 (372)
T PRK05868 236 EAQFAELQRRMAEDGWVRAQLLHYMRSAP--DF-YFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYIL 312 (372)
T ss_pred HHHHHHHHHHHhhCCCchHHHHhhcccCC--ce-eeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHH
Confidence 345788999998 676 55666654333 22 2332334567899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 95 AVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 138 (365)
Q Consensus 95 a~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~ 138 (365)
+++|... ..+++++|+.||+.++|++.+.|.....
T Consensus 313 a~~L~~~---------~~~~~~al~~ye~~~~~~~~~~q~~~~~ 347 (372)
T PRK05868 313 AGELKAA---------GDDYQLGFANYHAEFHGFVERNQWLVSD 347 (372)
T ss_pred HHHHHhc---------CCCHHHHHHHHHHHHhHHHHHhhhhhhc
Confidence 9999763 2368999999999999999988876554
No 12
>PRK07045 putative monooxygenase; Reviewed
Probab=99.75 E-value=6.7e-18 Score=166.72 Aligned_cols=121 Identities=26% Similarity=0.342 Sum_probs=91.7
Q ss_pred chHHHHHHHhcCCC-HHHHHHHHcCCcc-ceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHH
Q 017856 19 GKKERLLKIFEGWC-DNVVDLILATDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAV 96 (365)
Q Consensus 19 ~~~e~l~~~~~~w~-p~~~~li~~~~~~-~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~ 96 (365)
...+++.+.+..|. +.+.+.++..... .+..+++. ...+++|+.|||+|+|||||+|+|+.|||+|+||+||.+|++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~ 317 (388)
T PRK07045 239 TTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLG-RMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGA 317 (388)
T ss_pred CCHHHHHHHHhhhcCccchHHHhccCcccccceeecC-ccccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHH
Confidence 44677888887774 5555556544321 12222333 334578999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 017856 97 ELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTY 146 (365)
Q Consensus 97 ~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~ 146 (365)
+|...... ..+++++|++|+++|++++..++..++...+.++..
T Consensus 318 ~L~~~~~~------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~ 361 (388)
T PRK07045 318 CLDLHLSG------QIALADALERFERIRRPVNEAVISYGHALATTYHDR 361 (388)
T ss_pred HHHhhcCC------chhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccc
Confidence 99876321 235689999999999999999999998777666543
No 13
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.74 E-value=7.3e-18 Score=167.39 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=83.1
Q ss_pred EEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHH
Q 017856 48 LRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRL 127 (365)
Q Consensus 48 ~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~ 127 (365)
..++++.. ..++|++|||+|+|||||+|+|++|||+|+||+||.+|+++|....... .......+|+.||++|++
T Consensus 270 ~~~~l~~~-~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g----~~~~~~~~L~~Ye~~R~~ 344 (405)
T PRK05714 270 LCVPLRQR-HAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERG----ERLADVRVLSRFERRRMP 344 (405)
T ss_pred cEEeccee-ehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHH
Confidence 45677665 4689999999999999999999999999999999999999998753211 111235899999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhcCCCChhHHhhhccC
Q 017856 128 RVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 165 (365)
Q Consensus 128 r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
++..++..++...++++.. ..+...+|+..+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~R~~~l 375 (405)
T PRK05714 345 HNLALMAAMEGFERLFQAD-------PLPLRWLRNTGL 375 (405)
T ss_pred HHHHHHHHHHHHHHHHCCC-------chHHHHHHHHHH
Confidence 9999999999877766532 234556666543
No 14
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.73 E-value=1.2e-17 Score=160.90 Aligned_cols=128 Identities=36% Similarity=0.450 Sum_probs=96.9
Q ss_pred EEEEEeeCCCC-----CCCCCcchHHHHHHHhcCCCHHHHHHHHcCCccceEEeeeeccCCCC-Cc---cCCCEEEeccc
Q 017856 2 QWYAFHKEPAG-----GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIF-TW---GRGRVTLLGDS 72 (365)
Q Consensus 2 ~W~~~~~~~~~-----~~~~~~~~~e~l~~~~~~w~p~~~~li~~~~~~~~~~~~~~~~~~~~-~w---~~grv~LiGDA 72 (365)
.||++.+.+-+ +.+.|+..++...+.+..|+..+.++++.++++.+...++++++|.+ -| ++++|||+|||
T Consensus 217 ~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDA 296 (420)
T KOG2614|consen 217 IAYWFLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDA 296 (420)
T ss_pred EEEEeecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEeccc
Confidence 46666654432 34556666777788889999999999999998889988899988753 34 45789999999
Q ss_pred ccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCccc--------HHHHHHHHHHHHHHHH
Q 017856 73 VHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPID--------IVSALKSYERARRLRV 129 (365)
Q Consensus 73 AH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~--------~~~~l~~Ye~~R~~r~ 129 (365)
||+|+|+.|||+|+||||+.+|+++|.++.+.-...+.... ++.+...|..+|..|.
T Consensus 297 aHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~ 361 (420)
T KOG2614|consen 297 AHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRRL 361 (420)
T ss_pred ccccCCcccccccchHHHHHHHHHHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988542111111122 5667777777774444
No 15
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.72 E-value=4.6e-17 Score=161.19 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=71.2
Q ss_pred CCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 58 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 58 ~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
..+|++|||+|||||||+|+|+.|||+|+||+||.+|+++|.... ..+...+|+.|++.|++|+..+++.|+
T Consensus 273 ~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~--------~~~~~~al~~Y~~~R~~r~~~~~~~s~ 344 (390)
T TIGR02360 273 CEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHY--------QEGSSAGIEGYSARALARVWKAERFSW 344 (390)
T ss_pred cccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHh--------ccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999997642 124678999999999999999999999
Q ss_pred HHHHHHhH
Q 017856 138 SAAVMAST 145 (365)
Q Consensus 138 ~~~~~~~~ 145 (365)
..+.+++.
T Consensus 345 ~~~~~~~~ 352 (390)
T TIGR02360 345 WMTSLLHR 352 (390)
T ss_pred HHHHHhcC
Confidence 88777653
No 16
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.70 E-value=1.1e-17 Score=164.63 Aligned_cols=98 Identities=21% Similarity=0.282 Sum_probs=81.0
Q ss_pred ceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHH
Q 017856 46 AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERAR 125 (365)
Q Consensus 46 ~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R 125 (365)
.+..++++.. ...+|++|||+|+|||||+|+|++|||+|+||+||.+|+++|.. ..+|++||++|
T Consensus 256 ~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~--------------~~~L~~Ye~~R 320 (374)
T PRK06617 256 EISSFPLKAR-IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN--------------NGTLQEYQKLR 320 (374)
T ss_pred ceeEEEeeee-eccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC--------------cchHHHHHHHH
Confidence 3566778777 56899999999999999999999999999999999999999831 25899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhcCCCChhHHhhhccC
Q 017856 126 RLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 165 (365)
Q Consensus 126 ~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
++++..++..++...++++... .+...+|+..+
T Consensus 321 ~~~~~~~~~~t~~l~~~f~~~~-------~~~~~~R~~~l 353 (374)
T PRK06617 321 QEDNFIMYKLTDELNNIFSNYS-------KNLRCLRQIGF 353 (374)
T ss_pred hHHHHHHHHHHHHHHHHHcCCc-------hHHHHHHHHHH
Confidence 9999999999998777765332 23555666554
No 17
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.70 E-value=8.8e-17 Score=165.60 Aligned_cols=111 Identities=27% Similarity=0.421 Sum_probs=85.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHcCCccceEEeeeeccC--CCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHH
Q 017856 20 KKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRT--PIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVE 97 (365)
Q Consensus 20 ~~e~l~~~~~~w~p~~~~li~~~~~~~~~~~~~~~~~--~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~ 97 (365)
..+++.+.++.|... .....+.....|... ...+|++|||+|+|||||+|+|++|||+|+||+||++|+++
T Consensus 247 ~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~k 319 (538)
T PRK06183 247 SPENVWRLLAPWGPT-------PDDAELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWK 319 (538)
T ss_pred CHHHHHHHHHhhCCC-------CcceEEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHH
Confidence 456777777766310 011123334445433 34789999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017856 98 LEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 144 (365)
Q Consensus 98 L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~ 144 (365)
|..+++. ...+.+|+.|+++|++++..+++.+....++++
T Consensus 320 La~~~~g-------~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~ 359 (538)
T PRK06183 320 LAAVLRG-------RAGDALLDTYEQERRPHARAMIDLAVRLGRVIC 359 (538)
T ss_pred HHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9876431 234789999999999999999999998777654
No 18
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.69 E-value=1.6e-16 Score=164.05 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=81.7
Q ss_pred CCHHHHHHHHcCCccceEEeeeec--cCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCC
Q 017856 31 WCDNVVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNES 108 (365)
Q Consensus 31 w~p~~~~li~~~~~~~~~~~~~~~--~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~ 108 (365)
|.+.+.+++....+..+.....|. .....+|++|||+|+|||||+|+|++|||+|+||+||++|+++|..+++.
T Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g---- 339 (547)
T PRK08132 264 VIPRVRALLGEDVPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRG---- 339 (547)
T ss_pred HHHHHHHHcCCCCCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcC----
Confidence 334555555432222233334443 33457899999999999999999999999999999999999999987642
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017856 109 KTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 144 (365)
Q Consensus 109 ~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~ 144 (365)
...+.+|+.||++|+++++.++..+.....+++
T Consensus 340 ---~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~ 372 (547)
T PRK08132 340 ---RAPDSLLDSYASEREFAADENIRNSTRSTDFIT 372 (547)
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 234789999999999999999998887665543
No 19
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.69 E-value=4.9e-17 Score=160.56 Aligned_cols=95 Identities=26% Similarity=0.317 Sum_probs=76.4
Q ss_pred cCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 017856 55 RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHG 134 (365)
Q Consensus 55 ~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 134 (365)
...+.+|++|||+|+|||||+|+|+.|||+|+||+||++|+++|... ..+.+++|+.||++|++++..++.
T Consensus 270 ~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---------~~~~~~~L~~Ye~~R~~~~~~~~~ 340 (384)
T PRK08849 270 RRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---------GVLNDASFARYERRRRPDNLLMQT 340 (384)
T ss_pred ccccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHhHHHHHHHH
Confidence 34568999999999999999999999999999999999999998642 124578999999999999999998
Q ss_pred HHHHHHHHHhHhhhhhcCCCChhHHhhhccC
Q 017856 135 LARSAAVMASTYKAYLGVGLGPLSFLTKFRI 165 (365)
Q Consensus 135 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
.++...++++.. ..+...+|+..+
T Consensus 341 ~~~~~~~~~~~~-------~~~~~~~R~~~l 364 (384)
T PRK08849 341 GMDLFYKTFSNS-------LTPLKFVRNAAL 364 (384)
T ss_pred HHHHHHHHhcCC-------chHHHHHHHHHH
Confidence 888766665432 123555555543
No 20
>PRK06996 hypothetical protein; Provisional
Probab=99.68 E-value=9.4e-17 Score=159.32 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=72.1
Q ss_pred eeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHH
Q 017856 50 RDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 129 (365)
Q Consensus 50 ~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~ 129 (365)
++++ .....+|+.|||+|+|||||+|+|++|||+|+||+||++|+++|... .....+|++|+++|++++
T Consensus 278 ~~l~-~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~----------~~~~~~L~~Y~~~R~~~~ 346 (398)
T PRK06996 278 FPLG-LNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH----------GATPLALATFAARRALDR 346 (398)
T ss_pred Eeee-cccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc----------CCcHHHHHHHHHHHHHHH
Confidence 4444 33346899999999999999999999999999999999999999642 123578999999999999
Q ss_pred HHHHHHHHHHHHHHhH
Q 017856 130 AVIHGLARSAAVMAST 145 (365)
Q Consensus 130 ~~~~~~s~~~~~~~~~ 145 (365)
..++..++...++++.
T Consensus 347 ~~~~~~s~~l~~~~~~ 362 (398)
T PRK06996 347 RVTIGATDLLPRLFTV 362 (398)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999987777653
No 21
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.68 E-value=7.8e-17 Score=172.04 Aligned_cols=136 Identities=27% Similarity=0.359 Sum_probs=103.9
Q ss_pred CcchHHHHHHHhcCCCHHHHHHHHcCCccceEEeeeeccCCCCCccCCC----EEEecccccccCCCCchhhhhHHHHHH
Q 017856 17 PEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR----VTLLGDSVHAMQPNLGQGGCMAIEDGY 92 (365)
Q Consensus 17 ~~~~~e~l~~~~~~w~p~~~~li~~~~~~~~~~~~~~~~~~~~~w~~gr----v~LiGDAAH~~~P~~GqG~n~aieDa~ 92 (365)
++..++.+.+.|++|.+.. .++..........|..+.....++|++|| |+|+|||||+|+|+.|||+|+|||||+
T Consensus 219 ~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~ 297 (765)
T PRK08255 219 QEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAI 297 (765)
T ss_pred HHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHH
Confidence 3455788899999997643 34443322122336667666678999999 999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcCCCChhHHhhhcc
Q 017856 93 QLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFR 164 (365)
Q Consensus 93 ~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (365)
+|+++|... ..+++.+|+.|++.|++|++.+++.|+....++.....+. +..+.++.+++.
T Consensus 298 ~La~~L~~~---------~~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~~~ 358 (765)
T PRK08255 298 ELARCLHEH---------PGDLPAALAAYEEERRVEVLRIQNAARNSTEWFENVERYA--GLEPEQFAYSLL 358 (765)
T ss_pred HHHHHHHHc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecchhh--CCCHHHHHHHHH
Confidence 999999764 1257899999999999999999999998777665544444 344555555544
No 22
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.66 E-value=5.1e-16 Score=153.70 Aligned_cols=80 Identities=23% Similarity=0.201 Sum_probs=70.7
Q ss_pred CCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 58 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 58 ~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
..+|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|.+..+. +.+++|+.|+++|++|+..++..+.
T Consensus 273 ~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~--------~~~~~L~~Ye~~r~~r~~~~~~~~~ 344 (392)
T PRK08243 273 AEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE--------GDTALLDAYSATALRRVWKAERFSW 344 (392)
T ss_pred eccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999886431 2368999999999999999999998
Q ss_pred HHHHHHhH
Q 017856 138 SAAVMAST 145 (365)
Q Consensus 138 ~~~~~~~~ 145 (365)
....+++.
T Consensus 345 ~~~~~~~~ 352 (392)
T PRK08243 345 WMTSMLHR 352 (392)
T ss_pred HHHHHhhc
Confidence 87776553
No 23
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.65 E-value=2.2e-16 Score=156.14 Aligned_cols=105 Identities=21% Similarity=0.201 Sum_probs=77.4
Q ss_pred EeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHH
Q 017856 49 RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLR 128 (365)
Q Consensus 49 ~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r 128 (365)
.++++.. ..++|+.|||+|+|||||+|+|+.|||+|+||+||++|+++|.+...... ......+|++|+++|+++
T Consensus 268 ~~~l~~~-~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~----~~~~~~~l~~y~~~R~~~ 342 (392)
T PRK08773 268 AFPLRRQ-LVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRA----DWAAPHRLQRWARTRRSD 342 (392)
T ss_pred Eeechhh-hhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHH
Confidence 4555543 46899999999999999999999999999999999999999988653221 112357999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhcCCCChhHHhhhccC
Q 017856 129 VAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 165 (365)
Q Consensus 129 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
+..++..+....+++. ....+...+|+..+
T Consensus 343 ~~~~~~~~~~l~~~f~-------~~~~~~~~~r~~~l 372 (392)
T PRK08773 343 NTVAAYGFDAINRVFS-------NDEMHLTLLRGSVL 372 (392)
T ss_pred HHHHHHHHHHHHHHHc-------CCChHHHHHHHHHH
Confidence 8766655554443332 23334556665543
No 24
>PRK06184 hypothetical protein; Provisional
Probab=99.65 E-value=3.2e-16 Score=160.08 Aligned_cols=78 Identities=29% Similarity=0.386 Sum_probs=69.1
Q ss_pred CCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 58 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 58 ~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
.++|++|||+|+|||||+|+|++|||+|+||+||++|+++|..+++. ..+.+|+.|+++|+++++.++..++
T Consensus 275 a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g--------~~~~lL~~Ye~eR~p~~~~~~~~s~ 346 (502)
T PRK06184 275 ADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG--------APEALLDTYEEERRPVAAAVLGLST 346 (502)
T ss_pred hhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999987542 2368999999999999999999988
Q ss_pred HHHHHH
Q 017856 138 SAAVMA 143 (365)
Q Consensus 138 ~~~~~~ 143 (365)
......
T Consensus 347 ~~~~~~ 352 (502)
T PRK06184 347 ELLDAI 352 (502)
T ss_pred HHHHHH
Confidence 755443
No 25
>PRK08013 oxidoreductase; Provisional
Probab=99.64 E-value=4.6e-16 Score=154.48 Aligned_cols=90 Identities=23% Similarity=0.345 Sum_probs=72.6
Q ss_pred eeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHH
Q 017856 50 RDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 129 (365)
Q Consensus 50 ~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~ 129 (365)
+++... ..++|++|||+|+|||||+|+|++|||+|+||+||++|+++|...+.... ......+|++|+++|++++
T Consensus 269 ~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~----~~~~~~~L~~Y~~~R~~~~ 343 (400)
T PRK08013 269 FPLTGR-YARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGK----DIGQHLYLRRYERSRKHSA 343 (400)
T ss_pred Eeccee-ecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHH
Confidence 444443 35799999999999999999999999999999999999999987643211 1112458999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 017856 130 AVIHGLARSAAVMAS 144 (365)
Q Consensus 130 ~~~~~~s~~~~~~~~ 144 (365)
..++..++...++++
T Consensus 344 ~~~~~~~~~~~~l~~ 358 (400)
T PRK08013 344 ALMLAGMQGFRDLFA 358 (400)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999988887666654
No 26
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.63 E-value=2.7e-16 Score=155.17 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=79.6
Q ss_pred eEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHH
Q 017856 47 ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARR 126 (365)
Q Consensus 47 ~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~ 126 (365)
...++++.... .+|..|||+|+|||||.|+|++|||+|+||+||..|+++|.... ......++|+.|+++|+
T Consensus 264 ~~~~~l~~~~~-~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~-------~~~~~~~~L~~Y~~~R~ 335 (388)
T PRK07494 264 RQAWPLSGQVA-HRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRP-------EDPGSAAVLAAYDRARR 335 (388)
T ss_pred CcEeechHHHH-HhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHH
Confidence 34566665433 68999999999999999999999999999999999999998641 12235789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhcCCCChhHHhhhccC
Q 017856 127 LRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 165 (365)
Q Consensus 127 ~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
+++..++..+....+++... ..+...+|+..|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~R~~~l 367 (388)
T PRK07494 336 PDILSRTASVDLLNRSLLSD-------FLPVQDLRAAGL 367 (388)
T ss_pred HHHHHHHHHHHHHHHHHcCC-------chHHHHHHHHHH
Confidence 99998887777655554432 233455555544
No 27
>PRK06185 hypothetical protein; Provisional
Probab=99.63 E-value=1.3e-15 Score=151.21 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=91.0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHcCCc-cceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHH
Q 017856 19 GKKERLLKIFEGWCDNVVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVE 97 (365)
Q Consensus 19 ~~~e~l~~~~~~w~p~~~~li~~~~~-~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~ 97 (365)
...+++.+.+..+.|.+.+.+..... .....+++.. ....+|..+|++|+|||||.++|++|||+|+||+||..|+++
T Consensus 239 ~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~ 317 (407)
T PRK06185 239 AGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRV-DRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANI 317 (407)
T ss_pred hhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEec-cccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHH
Confidence 34567777777777776666654321 1233344432 345789999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017856 98 LEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 144 (365)
Q Consensus 98 L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~ 144 (365)
|.+.++.. .....+|+.|+++|++++..++.++....+++.
T Consensus 318 l~~~~~~~------~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~ 358 (407)
T PRK06185 318 LAEPLRRG------RVSDRDLAAVQRRREFPTRVTQALQRRIQRRLL 358 (407)
T ss_pred HHHHhccC------CccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhc
Confidence 99875421 123489999999999999999999988776654
No 28
>PRK06834 hypothetical protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=154.07 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=69.8
Q ss_pred CCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 58 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 58 ~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
.++|++|||+|+|||||.|+|++|||+|+||+||++|+|+|..+++. ...+.+|++|+++|++++..++..+.
T Consensus 259 a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g-------~~~~~lLd~Ye~eRrp~~~~~~~~t~ 331 (488)
T PRK06834 259 AASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKG-------TSPESLLDTYHAERHPVAARVLRNTM 331 (488)
T ss_pred cccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999987642 23478999999999999999998887
Q ss_pred HHHHHH
Q 017856 138 SAAVMA 143 (365)
Q Consensus 138 ~~~~~~ 143 (365)
....++
T Consensus 332 ~~~~~~ 337 (488)
T PRK06834 332 AQVALL 337 (488)
T ss_pred HHHHhh
Confidence 655444
No 29
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.63 E-value=7.8e-16 Score=152.98 Aligned_cols=90 Identities=27% Similarity=0.340 Sum_probs=74.3
Q ss_pred eeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHH
Q 017856 50 RDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 129 (365)
Q Consensus 50 ~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~ 129 (365)
++++.. ...+|++|||+|+|||||+|+|+.|||+|+||+||.+|+++|....... .......+|+.|+++|++++
T Consensus 269 ~pl~~~-~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~ 343 (405)
T PRK08850 269 FPLKMR-YARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQG----RDIGLKRNLRGYERWRKAEA 343 (405)
T ss_pred Eeccee-eccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHHhHHH
Confidence 444432 3478999999999999999999999999999999999999998764321 11234789999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 017856 130 AVIHGLARSAAVMAS 144 (365)
Q Consensus 130 ~~~~~~s~~~~~~~~ 144 (365)
..++..++...++++
T Consensus 344 ~~~~~~~~~l~~~~~ 358 (405)
T PRK08850 344 AKMIAAMQGFRDLFS 358 (405)
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999987776654
No 30
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.63 E-value=1.3e-15 Score=146.71 Aligned_cols=82 Identities=43% Similarity=0.489 Sum_probs=66.4
Q ss_pred eEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHH
Q 017856 47 ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARR 126 (365)
Q Consensus 47 ~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~ 126 (365)
+..+++... ...+|++|||+|||||||+|+|+.|||+|+||+||..|+++|....+. ...+++|+.|+++|+
T Consensus 275 ~~~~~~~~~-~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g-------~~~~~~l~~Y~~~r~ 346 (356)
T PF01494_consen 275 ISAWPIPQR-VADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKG-------EASEEALKAYEQERR 346 (356)
T ss_dssp EEEEEEEEE-EESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT-------SSHHHHHHHHHHHHH
T ss_pred ccccccccc-cccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHH
Confidence 334444433 346899999999999999999999999999999999999999987541 245789999999999
Q ss_pred HHHHHHHHHH
Q 017856 127 LRVAVIHGLA 136 (365)
Q Consensus 127 ~r~~~~~~~s 136 (365)
+|++.+++.+
T Consensus 347 ~~~~~~~~~~ 356 (356)
T PF01494_consen 347 PRARKAVQFD 356 (356)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhCC
Confidence 9999998653
No 31
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.62 E-value=1.2e-15 Score=151.76 Aligned_cols=91 Identities=27% Similarity=0.319 Sum_probs=73.6
Q ss_pred EeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHH
Q 017856 49 RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLR 128 (365)
Q Consensus 49 ~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r 128 (365)
.++++... ..+|++|||+|+|||||+|+|+.|||+|+||+||+.|+++|....+... ......+|+.|++.|+++
T Consensus 280 ~~~~~~~~-~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~----~~~~~~~L~~Y~~~R~~~ 354 (415)
T PRK07364 280 LFPVQLMQ-SDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGE----DIGSLAVLKRYERWRKRE 354 (415)
T ss_pred eecchhhh-hhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHH
Confidence 45554443 5789999999999999999999999999999999999999987642111 111248999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 017856 129 VAVIHGLARSAAVMAS 144 (365)
Q Consensus 129 ~~~~~~~s~~~~~~~~ 144 (365)
+..++..++....+++
T Consensus 355 ~~~~~~~s~~~~~~~~ 370 (415)
T PRK07364 355 NWLILGFTDLLDRLFS 370 (415)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999987666654
No 32
>PRK08244 hypothetical protein; Provisional
Probab=99.62 E-value=9.6e-16 Score=156.23 Aligned_cols=79 Identities=24% Similarity=0.249 Sum_probs=69.0
Q ss_pred CCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 58 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 58 ~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
.++|++|||+|+|||||.|+|++|||+|+||+||++|+++|..+++. ...+.+|+.|+++|+++++.++..++
T Consensus 266 a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g-------~~~~~lL~~Ye~eR~~~~~~~~~~~~ 338 (493)
T PRK08244 266 AERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKG-------WAPDWLLDSYHAERHPVGTALLRNTE 338 (493)
T ss_pred HhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcC-------CCCchhhhhhHHHHHHHHHHHHHHhH
Confidence 46899999999999999999999999999999999999999987642 12367999999999999999998877
Q ss_pred HHHHHH
Q 017856 138 SAAVMA 143 (365)
Q Consensus 138 ~~~~~~ 143 (365)
....++
T Consensus 339 ~~~~~~ 344 (493)
T PRK08244 339 VQTKLF 344 (493)
T ss_pred HHHHHh
Confidence 655554
No 33
>PRK06126 hypothetical protein; Provisional
Probab=99.61 E-value=7.2e-16 Score=159.04 Aligned_cols=82 Identities=33% Similarity=0.326 Sum_probs=71.1
Q ss_pred cCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 017856 55 RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHG 134 (365)
Q Consensus 55 ~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 134 (365)
....++|++|||+|+|||||+|+|++|||+|+||+||++|+++|..+.+. ...+++|+.|+++|++++..+++
T Consensus 294 ~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~-------~~~~~lL~~Y~~eR~p~~~~~~~ 366 (545)
T PRK06126 294 RLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNG-------WAGPALLDSYEAERRPIAARNTD 366 (545)
T ss_pred heehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcC-------CCcHHHHhhhHHHhhHHHHHHHH
Confidence 33457899999999999999999999999999999999999999887532 23468999999999999999999
Q ss_pred HHHHHHHHH
Q 017856 135 LARSAAVMA 143 (365)
Q Consensus 135 ~s~~~~~~~ 143 (365)
.++.....+
T Consensus 367 ~s~~~~~~~ 375 (545)
T PRK06126 367 YARRNADAL 375 (545)
T ss_pred HHHHHHHHh
Confidence 998765544
No 34
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.61 E-value=6.8e-16 Score=152.69 Aligned_cols=79 Identities=42% Similarity=0.597 Sum_probs=68.6
Q ss_pred CCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 59 FTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 138 (365)
Q Consensus 59 ~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~ 138 (365)
.+|.+|||+|+|||||+|+|++|||+|+||+||.+|+++|....+. ..+ ..+|+.|+++|++++..++..+..
T Consensus 273 ~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~------~~~-~~~L~~Y~~~R~~~~~~~~~~s~~ 345 (387)
T COG0654 273 ERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRP------GAD-AAALAAYEARRRPRAEAIQKLSRA 345 (387)
T ss_pred hheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhc------Ccc-HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999987542 112 799999999999999999999985
Q ss_pred HHHHHh
Q 017856 139 AAVMAS 144 (365)
Q Consensus 139 ~~~~~~ 144 (365)
..+.++
T Consensus 346 ~~~~~~ 351 (387)
T COG0654 346 LGRLFS 351 (387)
T ss_pred Hhhhhc
Confidence 444443
No 35
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.61 E-value=1.9e-15 Score=149.67 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=71.5
Q ss_pred CCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 57 PIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 136 (365)
Q Consensus 57 ~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s 136 (365)
...+|+.|||+|+|||||+|+|+.|||+|+||+||.+|+++|....+.. .....+.+|+.|+++|++++..++..+
T Consensus 273 ~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~----~~~~~~~~L~~Ye~~R~~~~~~~~~~~ 348 (403)
T PRK07333 273 LARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLG----LDIGSLDVLERYQRWRRFDTVRMGVTT 348 (403)
T ss_pred hhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999998764311 112357899999999999999999988
Q ss_pred HHHHHHHh
Q 017856 137 RSAAVMAS 144 (365)
Q Consensus 137 ~~~~~~~~ 144 (365)
+...++++
T Consensus 349 ~~~~~~~~ 356 (403)
T PRK07333 349 DVLNRLFS 356 (403)
T ss_pred HHHHHHHc
Confidence 87666554
No 36
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.61 E-value=2.8e-15 Score=156.88 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=69.0
Q ss_pred ccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 61 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 140 (365)
Q Consensus 61 w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~ 140 (365)
|+.|||+|+|||||+++|++|||+|+||+||++|+|+|..+++. ...+++|+.|+++|+++++.+++.++...
T Consensus 337 ~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g-------~a~~~lL~tYe~ERrp~a~~li~~~~~~~ 409 (634)
T PRK08294 337 TRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSG-------RSPPELLHTYSAERQAIAQELIDFDREWS 409 (634)
T ss_pred cccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999988642 23478999999999999999999999877
Q ss_pred HHHhH
Q 017856 141 VMAST 145 (365)
Q Consensus 141 ~~~~~ 145 (365)
++++.
T Consensus 410 ~l~~~ 414 (634)
T PRK08294 410 TMMAA 414 (634)
T ss_pred HHhcc
Confidence 76643
No 37
>PLN02985 squalene monooxygenase
Probab=99.60 E-value=7e-15 Score=150.38 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=84.4
Q ss_pred HHHHHHhcC-----CCHHHHHHHHc-CCc-cceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHH
Q 017856 22 ERLLKIFEG-----WCDNVVDLILA-TDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQL 94 (365)
Q Consensus 22 e~l~~~~~~-----w~p~~~~li~~-~~~-~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~L 94 (365)
.++.+.+.. +.+.+++.+.. .++ ..+...+.+.. +...|.+||++|||||||+|+|+.|||+|+|||||.+|
T Consensus 278 ~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l-~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vL 356 (514)
T PLN02985 278 GEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRM-SATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILIL 356 (514)
T ss_pred hhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccc-cccccCCCCEEEEecccccCCCCccccHhHHHHHHHHH
Confidence 444554443 34456665432 221 12444444433 33567789999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 95 AVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMA 143 (365)
Q Consensus 95 a~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~ 143 (365)
+++|.... +..+..++.++|++|++.|++++..++.+|+....++
T Consensus 357 a~lL~~~~----~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f 401 (514)
T PLN02985 357 RRLLQPLS----NLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVL 401 (514)
T ss_pred HHHhhhcc----cccchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 99998641 1112346789999999999999999999999876665
No 38
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.60 E-value=2.3e-15 Score=148.65 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=79.9
Q ss_pred EeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHH
Q 017856 49 RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLR 128 (365)
Q Consensus 49 ~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r 128 (365)
.++++.. ..++|.+|||+|+|||||+|+|+.|||+|+||+||.+|+++|.+..... .......+|+.|+++|+++
T Consensus 267 ~~pl~~~-~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~ 341 (391)
T PRK08020 267 AFPLTRR-HALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYG----EAWASEAVLKRYQRRRMAD 341 (391)
T ss_pred Eeeccee-ehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHH
Confidence 4555544 3578999999999999999999999999999999999999998763221 1123468999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhcCCCChhHHhhhccC
Q 017856 129 VAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 165 (365)
Q Consensus 129 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
...++..+.....+++. ...+...+|+..|
T Consensus 342 ~~~~~~~~~~l~~~~~~-------~~~~~~~~R~~~l 371 (391)
T PRK08020 342 NLLMQSGMDLFYAGFSN-------NLPPLRFARNLGL 371 (391)
T ss_pred HHHHHHHHHHHHHHHcC-------CchHHHHHHHHHH
Confidence 98888777755544432 2345666666554
No 39
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.60 E-value=2.3e-15 Score=151.26 Aligned_cols=91 Identities=27% Similarity=0.355 Sum_probs=74.2
Q ss_pred EeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHH
Q 017856 49 RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLR 128 (365)
Q Consensus 49 ~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r 128 (365)
.+++ .....++|.+|||+|+|||||.|+|++|||+|+||+||.+|+++|.+..+.. .......+|++|+++|+++
T Consensus 319 ~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~ 393 (437)
T TIGR01989 319 AFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVG----ADIGSISSLKPYERERYAK 393 (437)
T ss_pred eEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcC----CChhHHHHHHHHHHHHHHH
Confidence 3444 3334578999999999999999999999999999999999999999875321 1112257999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 017856 129 VAVIHGLARSAAVMAS 144 (365)
Q Consensus 129 ~~~~~~~s~~~~~~~~ 144 (365)
++.++..++...++++
T Consensus 394 ~~~v~~~t~~l~~l~~ 409 (437)
T TIGR01989 394 NVVLLGLVDKLHKLYA 409 (437)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999997776654
No 40
>PTZ00367 squalene epoxidase; Provisional
Probab=99.57 E-value=2.3e-14 Score=147.76 Aligned_cols=123 Identities=20% Similarity=0.169 Sum_probs=86.5
Q ss_pred HHHHHHHhc-CCCHHHHHHH-HcCCc-cceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHH
Q 017856 21 KERLLKIFE-GWCDNVVDLI-LATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVE 97 (365)
Q Consensus 21 ~e~l~~~~~-~w~p~~~~li-~~~~~-~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~ 97 (365)
.+.+.+.+. .+.+.+++.+ ....+ ..+..++.+..++ .+|..+|++|||||||+|+|++|||+|+||+||+.|+++
T Consensus 292 ~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~-~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~ 370 (567)
T PTZ00367 292 SEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPP-AFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKS 370 (567)
T ss_pred HHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCC-ccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHH
Confidence 444445444 3456666644 32221 2355566666554 467889999999999999999999999999999999999
Q ss_pred HHHhhhhc-CCCCCcccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 017856 98 LEKACKKS-NESKTPIDIVSALK----SYERARRLRVAVIHGLARSAAVMAS 144 (365)
Q Consensus 98 L~~~~~~~-~~~~~~~~~~~~l~----~Ye~~R~~r~~~~~~~s~~~~~~~~ 144 (365)
|....+.. .+.++..++..+|+ .|++.|++++..++.+|.....+++
T Consensus 371 L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~ 422 (567)
T PTZ00367 371 LTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFS 422 (567)
T ss_pred HHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence 97642110 01111224567777 9999999999999999987665554
No 41
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.57 E-value=2.7e-15 Score=147.55 Aligned_cols=90 Identities=24% Similarity=0.244 Sum_probs=74.8
Q ss_pred eEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHH
Q 017856 47 ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARR 126 (365)
Q Consensus 47 ~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~ 126 (365)
+..++++.. ..++|..|||+|+|||||+|+|+.|||+|+||+||..|+++|..... ....+++|+.|+++|+
T Consensus 260 ~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~-------~~~~~~~l~~Y~~~r~ 331 (382)
T TIGR01984 260 RKTYPLKLR-IAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARI-------DLGTYALLQEYLRRRQ 331 (382)
T ss_pred ccEeecchh-hhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhcc-------CccCHHHHHHHHHHHH
Confidence 344555543 45789999999999999999999999999999999999999987521 1234789999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 017856 127 LRVAVIHGLARSAAVMAS 144 (365)
Q Consensus 127 ~r~~~~~~~s~~~~~~~~ 144 (365)
+++..++.+++....++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~ 349 (382)
T TIGR01984 332 FDQFITIGLTDGLNRLFS 349 (382)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999987666654
No 42
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.56 E-value=5.9e-15 Score=145.43 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=69.3
Q ss_pred CCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 58 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 58 ~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
.+.|+.|||+|+|||||+|+|+.|||+|+||+||+.|+++|...... . .....++|++|+++|++++..++..++
T Consensus 274 ~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~----~-~~~~~~~l~~Ye~~R~~~~~~~~~~~~ 348 (388)
T PRK07608 274 VDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPF----R-DLGDLRLLRRYERARREDILALQVATD 348 (388)
T ss_pred hhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhcc----C-CCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999875211 0 112247999999999999999999988
Q ss_pred HHHHHHh
Q 017856 138 SAAVMAS 144 (365)
Q Consensus 138 ~~~~~~~ 144 (365)
....+++
T Consensus 349 ~~~~~~~ 355 (388)
T PRK07608 349 GLQRLFA 355 (388)
T ss_pred HHHHHHc
Confidence 7666654
No 43
>PRK09126 hypothetical protein; Provisional
Probab=99.56 E-value=6.8e-15 Score=145.26 Aligned_cols=92 Identities=21% Similarity=0.256 Sum_probs=74.9
Q ss_pred EEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHH
Q 017856 48 LRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRL 127 (365)
Q Consensus 48 ~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~ 127 (365)
..+++.... .++|+.|||+|+|||||.|+|+.|||+|+||+||..|+++|..+.+.. .....+++|+.|+++|++
T Consensus 265 ~~~~~~~~~-~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~----~~~~~~~~l~~Y~~~r~~ 339 (392)
T PRK09126 265 HAYPLVAVY-AHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRG----QDIGAASLLERYERKHRL 339 (392)
T ss_pred cEeechHHH-HHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcC----CCCccHHHHHHHHHHHHH
Confidence 344554332 378999999999999999999999999999999999999998875321 112347899999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 017856 128 RVAVIHGLARSAAVMAS 144 (365)
Q Consensus 128 r~~~~~~~s~~~~~~~~ 144 (365)
++..++..++....+++
T Consensus 340 ~~~~~~~~~~~~~~~~~ 356 (392)
T PRK09126 340 ATRPLYHATNAIAALYT 356 (392)
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 99999999987766654
No 44
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.56 E-value=1.2e-14 Score=142.68 Aligned_cols=93 Identities=27% Similarity=0.327 Sum_probs=75.0
Q ss_pred eEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHH
Q 017856 47 ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARR 126 (365)
Q Consensus 47 ~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~ 126 (365)
+..+++... ..++|+.|||+|+|||||+|+|+.|||+|+||+||..|+++|...+... .....+.+|+.|++.|+
T Consensus 260 ~~~~~~~~~-~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~----~~~~~~~~l~~y~~~r~ 334 (385)
T TIGR01988 260 RHAFPLSLT-HAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRG----EDIGSPRVLQRYERRRR 334 (385)
T ss_pred cceeechhh-hhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcC----CCCCcHHHHHHHHHHHH
Confidence 334555443 3468999999999999999999999999999999999999998764311 01124789999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 017856 127 LRVAVIHGLARSAAVMAS 144 (365)
Q Consensus 127 ~r~~~~~~~s~~~~~~~~ 144 (365)
+++..++..++...+++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~ 352 (385)
T TIGR01988 335 FDNAAMLGATDGLNRLFS 352 (385)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999987766554
No 45
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.55 E-value=5.5e-14 Score=112.00 Aligned_cols=98 Identities=37% Similarity=0.574 Sum_probs=81.3
Q ss_pred EEEEEcCCCCCccccEEEeecCCCCCEEEcCCCCCCCCcc-eEEeCCccccccceEEEEEC-CEEEEEEcCCCccceeeC
Q 017856 231 WFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRT-SIVIPSAQVSKMHARISYKD-GAFYLIDLQSEHGTYVTD 308 (365)
Q Consensus 231 w~l~~~~~~~~~~~~i~l~~~~~~~~~~IGR~~~~~~~~~-di~l~~~~VSr~Ha~i~~~~-~~~~i~Dl~S~nGT~vng 308 (365)
|.|....+. .....+.|. . +..++|||++. | ++.++++.|||.||.|.++. +.+++.|+.|+||||||+
T Consensus 2 ~~L~~~~~~-~~~~~~~l~-~--~~~~~iGr~~~-----~~~i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~ 72 (102)
T cd00060 2 PRLVVLSGD-ASGRRYYLD-P--GGTYTIGRDSD-----NCDIVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNG 72 (102)
T ss_pred eEEEEecCC-CceeEEEEC-C--CCeEEECcCCC-----cCCEEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECC
Confidence 555555543 334778888 3 15699999999 7 99999999999999999997 899999999999999999
Q ss_pred CCCceeeecCCCcEEeCCCCEEEECCCceeEEEEE
Q 017856 309 NEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVK 343 (365)
Q Consensus 309 ~~~~~~~l~~~~~~~L~~Gd~I~~G~~~~~~f~~~ 343 (365)
. ++.++.++.|.+||.|.||.. ...|+|.
T Consensus 73 ~-----~~~~~~~~~l~~gd~i~ig~~-~~~~~~~ 101 (102)
T cd00060 73 Q-----RVSPGEPVRLRDGDVIRLGNT-SISFRFE 101 (102)
T ss_pred E-----ECCCCCcEECCCCCEEEECCe-EEEEEEe
Confidence 8 888878999999999999974 2355553
No 46
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.55 E-value=7.7e-15 Score=144.86 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=70.5
Q ss_pred CCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 58 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 58 ~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
..+|..|||+|+|||||+|+|+.|||+|+||+||.+|+++|..+++... ....+++|+.|+++|++++..++..++
T Consensus 276 ~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~----~~~~~~~l~~Y~~~R~~~~~~~~~~~~ 351 (395)
T PRK05732 276 AAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGE----DIGDYAVLQRYQQRRQQDREATIGFTD 351 (395)
T ss_pred hhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999987643211 112358999999999999999999998
Q ss_pred HHHHHHh
Q 017856 138 SAAVMAS 144 (365)
Q Consensus 138 ~~~~~~~ 144 (365)
....++.
T Consensus 352 ~~~~~~~ 358 (395)
T PRK05732 352 GLVRLFA 358 (395)
T ss_pred HHHHHHc
Confidence 8776654
No 47
>PRK07190 hypothetical protein; Provisional
Probab=99.54 E-value=1.6e-14 Score=146.94 Aligned_cols=78 Identities=22% Similarity=0.215 Sum_probs=68.3
Q ss_pred CCCcc-CCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 58 IFTWG-RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 136 (365)
Q Consensus 58 ~~~w~-~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s 136 (365)
..+|. +|||+|+|||||.++|++|||+|+||+||++|+|+|..+++. ...+.+|++|+++|++.++.++..+
T Consensus 268 a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g-------~a~~~lLdtY~~eR~p~a~~vl~~t 340 (487)
T PRK07190 268 AEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHH-------GASPELLQSYEAERKPVAQGVIETS 340 (487)
T ss_pred hhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 36786 799999999999999999999999999999999999987642 1237899999999999999999988
Q ss_pred HHHHHH
Q 017856 137 RSAAVM 142 (365)
Q Consensus 137 ~~~~~~ 142 (365)
+...++
T Consensus 341 ~~~~~~ 346 (487)
T PRK07190 341 GELVRS 346 (487)
T ss_pred HHHHhh
Confidence 865543
No 48
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.52 E-value=5.5e-14 Score=138.63 Aligned_cols=85 Identities=29% Similarity=0.510 Sum_probs=76.0
Q ss_pred cccEEEeecCCCCCEEEcCCCCCCCCcceEEeCCcc--ccccceEEEEECCEEEEEEcCCCccceee--CCCCceeeecC
Q 017856 243 SQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQ--VSKMHARISYKDGAFYLIDLQSEHGTYVT--DNEGRRYRVSS 318 (365)
Q Consensus 243 ~~~i~l~~~~~~~~~~IGR~~~~~~~~~di~l~~~~--VSr~Ha~i~~~~~~~~i~Dl~S~nGT~vn--g~~~~~~~l~~ 318 (365)
+..+.+. ....+|||++. |+++++++. ||+.||+|.++++.|+|+|+ |+|||||| |. ++.+
T Consensus 16 ~~~~~f~----~~~~~IGR~~~-----~d~~l~d~~~~VS~~Ha~I~~~~g~~~l~Dl-StNGT~VN~sg~-----~l~~ 80 (396)
T TIGR03354 16 AAQKTFG----TNGGTIGRSED-----CDWVLPDPERHVSGRHARIRYRDGAYLLTDL-STNGVFLNGSGS-----PLGR 80 (396)
T ss_pred ceEEEEC----CCCEEEecCCC-----CCEEeCCCCCCcchhhcEEEEECCEEEEEEC-CCCCeEECCCCC-----CCCC
Confidence 3678888 55599999999 999999998 99999999999999999998 99999999 66 8888
Q ss_pred CCcEEeCCCCEEEECCCceeEEEEEEe
Q 017856 319 NFPARFRPSDTIEFGSDKKAIFRVKVI 345 (365)
Q Consensus 319 ~~~~~L~~Gd~I~~G~~~~~~f~~~~~ 345 (365)
+.++.|++||+|+||.. .+++...
T Consensus 81 ~~~~~L~~GD~I~iG~~---~lrv~~~ 104 (396)
T TIGR03354 81 GNPVRLEQGDRLRLGDY---EIRVSLG 104 (396)
T ss_pred CCceEcCCCCEEEECCE---EEEEEeC
Confidence 88899999999999998 5666653
No 49
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.38 E-value=1.7e-12 Score=115.78 Aligned_cols=71 Identities=28% Similarity=0.461 Sum_probs=65.4
Q ss_pred CCCEEEcCCCCCCCCcceEEeCCccccccceEEEEECCEEEEEEcCCCccceeeCCCCceeeecCCCcEEeCCCCEEEEC
Q 017856 254 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 333 (365)
Q Consensus 254 ~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~~~~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G 333 (365)
...++|||+++ +++++++..|||+||.|.++++.++++|++|+|||||||. ++.. ...|.+||.|.||
T Consensus 88 ~~~~tigr~~~-----~~i~~~~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~-----~v~~--~~~l~~gd~i~i~ 155 (191)
T COG1716 88 EPVTTIGRDPD-----NDIVLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGE-----KVRQ--RVLLQDGDVIRLG 155 (191)
T ss_pred cceEEeccCCC-----CCEEcCCCccccceEEEEEeCCceEEEECCCCcceEECCe-----EccC--cEEcCCCCEEEEC
Confidence 34699999888 9999999999999999999999999999999999999998 7763 6899999999999
Q ss_pred CCc
Q 017856 334 SDK 336 (365)
Q Consensus 334 ~~~ 336 (365)
...
T Consensus 156 ~~~ 158 (191)
T COG1716 156 GTL 158 (191)
T ss_pred ccc
Confidence 983
No 50
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.33 E-value=1.8e-12 Score=115.55 Aligned_cols=105 Identities=30% Similarity=0.489 Sum_probs=83.0
Q ss_pred ccCCchHHhhccCCcEEEEEcCCCCCccccEEEeecCCCCCEEEcCCCCCCCCcceEEeCCccccccceEEEEE------
Q 017856 216 WFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK------ 289 (365)
Q Consensus 216 ~l~~~~ale~~~~~~w~l~~~~~~~~~~~~i~l~~~~~~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~------ 289 (365)
+-+.+.+ +.+..+|=|-+...... ..++.+. .+..+++||...- +||.+++++.|++||.|.+.
T Consensus 161 y~eppea--rkP~kRwrLy~fk~~e~-l~~l~iH---rqs~yL~gRerkI----aDi~idhpScSKQHaviQyR~v~~~r 230 (293)
T KOG1882|consen 161 YNEPPEA--RKPKKRWRLYPFKCYEV-LPVLYIH---RQSCYLDGRERKI----ADIPIDHPSCSKQHAVIQYRLVEFTR 230 (293)
T ss_pred ecCCchh--cCchhheecccccCCcc-cchheee---eeeeeecCceeee----eccCCCCccccccceeeeeeeccccc
Confidence 4444444 45566788888765543 2455555 2556999997765 89999999999999999875
Q ss_pred -CC------EEEEEEcCCCccceeeCCCCceeeecCCCcEEeCCCCEEEECCC
Q 017856 290 -DG------AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 335 (365)
Q Consensus 290 -~~------~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~ 335 (365)
+| ..||.||+|.||||||.. +|.|...++|..+|+|.||-.
T Consensus 231 ~dGt~grrvkpYiiDLgS~NgTfLNnk-----~IepqRYyEL~ekDvlkfgfs 278 (293)
T KOG1882|consen 231 ADGTVGRRVKPYIIDLGSGNGTFLNNK-----VIEPQRYYELREKDVLKFGFS 278 (293)
T ss_pred CCCccceeeeeEEEecCCCCcceecCc-----ccCchheeeeecCceeeeccc
Confidence 22 269999999999999999 999999999999999999965
No 51
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.27 E-value=5.4e-12 Score=88.32 Aligned_cols=48 Identities=44% Similarity=0.771 Sum_probs=44.5
Q ss_pred EEEcCCC-CCCCCcceEEeCCccccccceEEEEECCE-EEEEEcCCCccceeeCC
Q 017856 257 YLIGSES-HEDFSRTSIVIPSAQVSKMHARISYKDGA-FYLIDLQSEHGTYVTDN 309 (365)
Q Consensus 257 ~~IGR~~-~~~~~~~di~l~~~~VSr~Ha~i~~~~~~-~~i~Dl~S~nGT~vng~ 309 (365)
++|||.+ . |+++++++.||+.||.|.++.+. |+|+|++|+|||||||+
T Consensus 1 ~~iGr~~~~-----~~i~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~ 50 (52)
T smart00240 1 VTIGRSSED-----CDIQLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGK 50 (52)
T ss_pred CEeCCCCCC-----CCEEeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCE
Confidence 3799999 6 99999999999999999999665 99999999999999997
No 52
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.22 E-value=2.3e-11 Score=117.20 Aligned_cols=79 Identities=33% Similarity=0.430 Sum_probs=71.2
Q ss_pred CCCEEEcCCCCCCCCcceEEeCCc--cccccceEEEEECCEEEEEEcCCCccceeeCCCCceeeecCCCc-EEeCCCCEE
Q 017856 254 NEPYLIGSESHEDFSRTSIVIPSA--QVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP-ARFRPSDTI 330 (365)
Q Consensus 254 ~~~~~IGR~~~~~~~~~di~l~~~--~VSr~Ha~i~~~~~~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~-~~L~~Gd~I 330 (365)
.+...|||+++ ||..|+|+ .||+.||+|.+.+|.|+|+|. |.|||||||. .+..|.. ..|+.||+|
T Consensus 25 ~~~g~IGrs~d-----cdW~i~D~~~~VS~~Hc~I~~~dg~f~L~Dt-S~g~l~VNgs-----~~~~g~~~~RLqqGd~i 93 (430)
T COG3456 25 RGGGVIGRSPD-----CDWQIDDPERFVSKQHCTISYRDGGFCLTDT-SNGGLLVNGS-----DLPLGEGSARLQQGDEI 93 (430)
T ss_pred cCCcccccCCC-----CCccccCcccccchhheEEEecCCeEEEEec-CCCceeeccc-----ccCCCCCccccccCCEE
Confidence 44589999999 99999765 699999999999999999994 7999999998 7877877 999999999
Q ss_pred EECCCceeEEEEEEec
Q 017856 331 EFGSDKKAIFRVKVIG 346 (365)
Q Consensus 331 ~~G~~~~~~f~~~~~~ 346 (365)
.+|+. .|+|.+.+
T Consensus 94 ~iG~y---~i~V~l~~ 106 (430)
T COG3456 94 LIGRY---IIRVHLSR 106 (430)
T ss_pred eeccE---EEEEEecc
Confidence 99999 88888865
No 53
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.95 E-value=3e-10 Score=115.34 Aligned_cols=81 Identities=25% Similarity=0.491 Sum_probs=71.1
Q ss_pred CCCEEEcCCCCCCCCcceEEeCCccccccceEEEEE--C---------CEEEEEEcCCCccceeeCCCCceeeecCCCcE
Q 017856 254 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--D---------GAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPA 322 (365)
Q Consensus 254 ~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~--~---------~~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~~ 322 (365)
...++|||-.. ||+.+.+++|||.||.|.+. + -+|+|.||+||+|||+|.. +++|....
T Consensus 176 ~~~~~fgr~~~-----cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~-----rvppk~yi 245 (793)
T KOG1881|consen 176 AAACLFGRLGG-----CDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKD-----RVPPKVYI 245 (793)
T ss_pred ceeEEecccCC-----CccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccc-----cCCCcchh
Confidence 45689999998 99999999999999999886 2 2399999999999999999 99999999
Q ss_pred EeCCCCEEEECCCceeEEEEEEe
Q 017856 323 RFRPSDTIEFGSDKKAIFRVKVI 345 (365)
Q Consensus 323 ~L~~Gd~I~~G~~~~~~f~~~~~ 345 (365)
.++.|++++||..++ +|.|+-.
T Consensus 246 r~~Vg~v~~fggsTr-l~i~Qgp 267 (793)
T KOG1881|consen 246 RDRVGHVARFGGSTR-LYIFQGP 267 (793)
T ss_pred hhhHHHHHHhcCceE-EEEeeCC
Confidence 999999999999955 4666544
No 54
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=98.89 E-value=1.5e-08 Score=94.47 Aligned_cols=114 Identities=23% Similarity=0.229 Sum_probs=82.4
Q ss_pred HHHHHHHhc-CCCHHHHHHH-HcCCccceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHH
Q 017856 21 KERLLKIFE-GWCDNVVDLI-LATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 98 (365)
Q Consensus 21 ~e~l~~~~~-~w~p~~~~li-~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L 98 (365)
++.+.+.+. ..++.+++.+ ++.++..+...+....++...+. ..++|+|||++.-+|.+|+||+.|+.||..|+++|
T Consensus 86 ~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~-~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL 164 (276)
T PF08491_consen 86 KEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWK-PGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLL 164 (276)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCC-CCEEEEehhhcCcCCccccchhhHHHHHHHHHHHH
Confidence 444444443 3456666644 33444456566666666655555 56999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 99 EKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 139 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~ 139 (365)
... .+-.+...+.++++.|+.+|++....+--+|...
T Consensus 165 ~~~----~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aL 201 (276)
T PF08491_consen 165 SPI----PDLSDTKAVLEALKKFHWKRKPLSSVINILAQAL 201 (276)
T ss_pred hhh----cCcccHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 876 1122344678899999999999998766666543
No 55
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.82 E-value=3.8e-09 Score=99.46 Aligned_cols=47 Identities=30% Similarity=0.304 Sum_probs=41.1
Q ss_pred eeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHH
Q 017856 52 IYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 98 (365)
Q Consensus 52 ~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L 98 (365)
+....+..+|+.+|++|+|||||.++|+.|||+|+||+||..++++|
T Consensus 249 ~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 249 IPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred eccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 33344556899999999999999999999999999999999998864
No 56
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.74 E-value=7.6e-09 Score=95.42 Aligned_cols=81 Identities=30% Similarity=0.601 Sum_probs=71.9
Q ss_pred CCCEEEcCCCCCCCCcceEEeCCccccccceEEEEE--CCEEEEEEcCCCccceeeCCCCceeeecCCCcEEeCCCCEEE
Q 017856 254 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIE 331 (365)
Q Consensus 254 ~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~--~~~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~ 331 (365)
.+.++.||.++. ||.++++.++||.||.+.+. ...++|.||+|++|||+... ||.+..++++..|..++
T Consensus 37 kr~y~Fgrn~q~----~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~-----rL~~~~p~~l~i~~~~~ 107 (337)
T KOG1880|consen 37 KRRYLFGRNHQT----CDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNE-----RLEPHKPVQLEIGSTFH 107 (337)
T ss_pred hhhhhhccCCCc----cceEeecchhhhhHhhhhhhhccceEEEEEccCCcceeeeee-----eeccCCCccccCCceEE
Confidence 566999999998 99999999999999999876 56699999999999999988 99999999999999999
Q ss_pred ECCCceeEEEEEE
Q 017856 332 FGSDKKAIFRVKV 344 (365)
Q Consensus 332 ~G~~~~~~f~~~~ 344 (365)
||..++ .|.++.
T Consensus 108 fgasTr-~y~lr~ 119 (337)
T KOG1880|consen 108 FGASTR-IYLLRE 119 (337)
T ss_pred Eeccce-eeeeec
Confidence 999865 344443
No 57
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.70 E-value=1.6e-08 Score=97.96 Aligned_cols=83 Identities=28% Similarity=0.343 Sum_probs=70.4
Q ss_pred CCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 59 FTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 138 (365)
Q Consensus 59 ~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~ 138 (365)
+.+...|+.|+|||||-++|.+|||.|+++.|+..|+..|+.+.....+-++ ..-|+.|+.+|.++.-.+......
T Consensus 365 ~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS----~~~L~~y~~~~~~~N~~ll~~vdk 440 (481)
T KOG3855|consen 365 DEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS----VEHLEPYERERLQHNYVLLGAVDK 440 (481)
T ss_pred HHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccc----hhhhhHHHHHHhhhcchHHHHHHH
Confidence 4678899999999999999999999999999999999999999876554444 578999999999988888777766
Q ss_pred HHHHHhH
Q 017856 139 AAVMAST 145 (365)
Q Consensus 139 ~~~~~~~ 145 (365)
..+++++
T Consensus 441 l~klY~t 447 (481)
T KOG3855|consen 441 LHKLYAT 447 (481)
T ss_pred HHHHHhc
Confidence 5555543
No 58
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.68 E-value=9e-08 Score=94.77 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=61.8
Q ss_pred CCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 57 PIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 136 (365)
Q Consensus 57 ~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s 136 (365)
+.++|..++++|+|||||.++|++|||++.||+++..+++.+.+.+... -...|+.|++..+..........
T Consensus 257 ~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~--------~~~~L~~Y~~~~~~~~~~~~~~~ 328 (388)
T TIGR02023 257 PRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG--------DATDLRHYERKFMKLYGTTFRVL 328 (388)
T ss_pred ccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999999999999999998875421 14679999998887765555555
Q ss_pred HHHH
Q 017856 137 RSAA 140 (365)
Q Consensus 137 ~~~~ 140 (365)
+...
T Consensus 329 ~~~~ 332 (388)
T TIGR02023 329 RVLQ 332 (388)
T ss_pred HHHH
Confidence 4433
No 59
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.53 E-value=4.1e-07 Score=91.94 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=62.1
Q ss_pred CCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 58 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 58 ~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
..+|..||++|+|||||.++|++|+|.+.||.++..+++.+.+.+..... ......|+.|++..+.........+.
T Consensus 303 ~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~----~~s~~~L~~Y~~~~~~~~g~~~~~~~ 378 (450)
T PLN00093 303 RPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTR----MVDEADLREYLRKWDKKYWPTYKVLD 378 (450)
T ss_pred ccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCC----cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999877542110 11246789999977766655555555
Q ss_pred HHHHH
Q 017856 138 SAAVM 142 (365)
Q Consensus 138 ~~~~~ 142 (365)
...++
T Consensus 379 ~l~~~ 383 (450)
T PLN00093 379 ILQKV 383 (450)
T ss_pred HHHHH
Confidence 44443
No 60
>PRK11445 putative oxidoreductase; Provisional
Probab=98.53 E-value=1.4e-07 Score=92.19 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=49.3
Q ss_pred ccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHH
Q 017856 61 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 130 (365)
Q Consensus 61 w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~ 130 (365)
+.++||+|||||||.++|++|||+|.||+|+..|++.|.+.. ...++.|++..+.-.-
T Consensus 261 ~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~------------~~~~~~y~~~~~~~~~ 318 (351)
T PRK11445 261 CGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP------------EKLNTAYWRKTRKLRL 318 (351)
T ss_pred cCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc------------cchHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999999997541 4578999997665553
No 61
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.50 E-value=3.6e-07 Score=90.14 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=52.5
Q ss_pred CccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHH
Q 017856 60 TWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAV 131 (365)
Q Consensus 60 ~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~ 131 (365)
.++.+||+|||||||.++|.+|+|++.|++++..|++.|.+.+.. +...+++.|++.-+++..+
T Consensus 258 ~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 258 PFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQ--------SSELATAAWDGLWPTERRR 321 (388)
T ss_pred CccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhcc--------CHHHHHHHHHHhchHHHHH
Confidence 357899999999999999999999999999999999999887532 2367888887654544443
No 62
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.48 E-value=7.4e-07 Score=88.67 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=61.6
Q ss_pred CCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 58 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 58 ~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
.++|..++++|+|||||.++|++|+|.+.||+++..+++.+.+.+.... .......|+.|++..+.........+.
T Consensus 264 ~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~----~~~~~~~l~~Y~~~~~~~~~~~~~~~~ 339 (398)
T TIGR02028 264 RPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGG----AVTEEGDLAGYLRRWDKEYRPTYRVLD 339 (398)
T ss_pred cccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCC----CcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999999987754211 001256899999976665555555555
Q ss_pred HHHHH
Q 017856 138 SAAVM 142 (365)
Q Consensus 138 ~~~~~ 142 (365)
...++
T Consensus 340 ~~~~~ 344 (398)
T TIGR02028 340 LLQRV 344 (398)
T ss_pred HHHHH
Confidence 44443
No 63
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.21 E-value=1.7e-06 Score=85.32 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=52.1
Q ss_pred CccC-CCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHH
Q 017856 60 TWGR-GRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIH 133 (365)
Q Consensus 60 ~w~~-grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~ 133 (365)
.|.. ++|+++|||||.++|.+|||++.+++||..|++++... ...+..++..|...|+.+.....
T Consensus 246 ~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 311 (370)
T TIGR01789 246 YQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLS---------SEQLAAFIDSRARRHWSKTGYYR 311 (370)
T ss_pred ccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCcC---------ccchhhhhhHHHHHHHHHhHHHH
Confidence 3554 45999999999999999999999999999999988511 12455678999999888886443
No 64
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=2.6e-05 Score=75.92 Aligned_cols=86 Identities=23% Similarity=0.370 Sum_probs=70.7
Q ss_pred ccEEEeecCCCCCEEEcCCCCCCCCcceEEeCCccccccceEEEEE---------------CCEEEEEEcCCCccceeeC
Q 017856 244 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK---------------DGAFYLIDLQSEHGTYVTD 308 (365)
Q Consensus 244 ~~i~l~~~~~~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~---------------~~~~~i~Dl~S~nGT~vng 308 (365)
..+.+. +..++.||.+. ||..+....+|..|-.|..- ...+++.| .|+||||||.
T Consensus 57 ~~~d~~----nd~f~fGR~~~-----~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~D-hS~nGT~VN~ 126 (475)
T KOG0615|consen 57 KSIDLA----NDEFTFGRGDS-----CDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHD-HSRNGTFVND 126 (475)
T ss_pred ccceec----cceEEecCCCc-----ccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEe-cccCcccccH
Confidence 345555 44599999998 99999888888888877432 24589999 6999999999
Q ss_pred CCCceeeecCCCcEEeCCCCEEEECCCceeEEEEEE
Q 017856 309 NEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 344 (365)
Q Consensus 309 ~~~~~~~l~~~~~~~L~~Gd~I~~G~~~~~~f~~~~ 344 (365)
. .+..+....|++||+|.+|-+....|.+..
T Consensus 127 e-----~i~k~~~r~lkN~dei~is~p~~~~~v~~~ 157 (475)
T KOG0615|consen 127 E-----MIGKGLSRILKNGDEISISIPALKIFVFED 157 (475)
T ss_pred h-----HhhccccccccCCCEEEeccchhheeeeec
Confidence 9 999999999999999999998666676665
No 65
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=97.66 E-value=0.0002 Score=71.62 Aligned_cols=77 Identities=8% Similarity=0.160 Sum_probs=61.2
Q ss_pred cccEEEeecCCCCCEEEc-CCCCCCCCcceEEeCCccccccceEEEEECCEEEEEEcCCCccceeeCCCCceeeecCCCc
Q 017856 243 SQPIYLSVSHENEPYLIG-SESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP 321 (365)
Q Consensus 243 ~~~i~l~~~~~~~~~~IG-R~~~~~~~~~di~l~~~~VSr~Ha~i~~~~~~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~ 321 (365)
+..++|. .+.++|| ++++ |||++.|+.||++|+.|.++..++.+.| +..++++||. .+.....
T Consensus 12 G~~~~L~----~g~~~iG~~~~~-----~di~L~d~~~~~~h~~l~v~~~~~~l~~--~~~~~~~~g~-----~~~~~~g 75 (410)
T TIGR02500 12 GAELPLP----EGNLVLGTDAAD-----CDIVLSDGGIAAVHVSLHVRLEGVTLAG--AVEPAWEEGG-----VLPDEEG 75 (410)
T ss_pred CcEEECC----CCceEeccCCCC-----cEEEeCCCCccchheEEEEcCceEEEec--CCcceeECCc-----ccccCCC
Confidence 4889999 4559999 8888 9999999999999999999998998887 6778999983 2322334
Q ss_pred EEeCCCCEEEECCC
Q 017856 322 ARFRPSDTIEFGSD 335 (365)
Q Consensus 322 ~~L~~Gd~I~~G~~ 335 (365)
..|..+..|..|..
T Consensus 76 ~~l~~~~~l~~g~~ 89 (410)
T TIGR02500 76 TPLPSGTPLLVAGV 89 (410)
T ss_pred CccCCCCceeccee
Confidence 55667777777766
No 66
>PRK10015 oxidoreductase; Provisional
Probab=97.41 E-value=0.00092 Score=67.27 Aligned_cols=103 Identities=16% Similarity=0.043 Sum_probs=67.8
Q ss_pred chHHHHHHHhcCCCHHHHHHHHcCCccceEEe--eeeccCCCCCccCCCEEEecccccccC--CCCchhhhhHHHHHHHH
Q 017856 19 GKKERLLKIFEGWCDNVVDLILATDEEAILRR--DIYDRTPIFTWGRGRVTLLGDSVHAMQ--PNLGQGGCMAIEDGYQL 94 (365)
Q Consensus 19 ~~~e~l~~~~~~w~p~~~~li~~~~~~~~~~~--~~~~~~~~~~w~~grv~LiGDAAH~~~--P~~GqG~n~aieDa~~L 94 (365)
....++++.|. -+|.+..++.......+... |......+++.+.++++|+||||.-.+ |+.|.|++.||..+...
T Consensus 249 ~~~~~~l~~~~-~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~A 327 (429)
T PRK10015 249 KSVPQMLEDFK-QHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAA 327 (429)
T ss_pred CCHHHHHHHHh-hChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHH
Confidence 34556666664 36777777753321111111 111112335677899999999999998 56999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHH
Q 017856 95 AVELEKACKKSNESKTPIDIVSALKSYERARRLR 128 (365)
Q Consensus 95 a~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r 128 (365)
|+.+.+++... .-....|+.|++.-+..
T Consensus 328 Ae~i~~a~~~~------d~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 328 ATTVIAAKERA------DFSASSLAQYKRELEQS 355 (429)
T ss_pred HHHHHHHHhcC------CCccccHHHHHHHHHHC
Confidence 99998875421 01245779999866544
No 67
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.26 E-value=0.0008 Score=71.81 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=65.0
Q ss_pred CCCEEEcCCCCCCCCcceEEeCCccccccceEEEEECCE--EEEEEcCCCccceeeCCCCceeeecCCCcEEeCCCCEEE
Q 017856 254 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGA--FYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIE 331 (365)
Q Consensus 254 ~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~~~~--~~i~Dl~S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~ 331 (365)
.+.+.|||.+.... .||++....|--+||.|.-++|. ++|.-. ----|||||+ .+. ++..|+.||+|.
T Consensus 476 eG~TrVG~~~a~~~--~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aetyVNGk-----~v~--ep~qL~~GdRii 545 (1221)
T KOG0245|consen 476 EGETRVGREDASSR--QDIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETYVNGK-----LVT--EPTQLRSGDRII 545 (1221)
T ss_pred cCceecCCCCcccC--CceEecchhhhhhceEEEecCCCceEEeccC-CccceeEccE-----EcC--CcceeccCCEEE
Confidence 45599999876543 78999999999999999999766 666652 3556999998 775 689999999999
Q ss_pred ECCCceeEEEEEEe
Q 017856 332 FGSDKKAIFRVKVI 345 (365)
Q Consensus 332 ~G~~~~~~f~~~~~ 345 (365)
||... +|+|.-+
T Consensus 546 lG~~H--~frfn~P 557 (1221)
T KOG0245|consen 546 LGGNH--VFRFNHP 557 (1221)
T ss_pred EcCce--eEEecCH
Confidence 99984 6887654
No 68
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.19 E-value=0.0014 Score=65.81 Aligned_cols=104 Identities=16% Similarity=0.011 Sum_probs=67.7
Q ss_pred chHHHHHHHhcCCCHHHHHHHHcCCccceE--EeeeeccCCCCCccCCCEEEecccccccCC--CCchhhhhHHHHHHHH
Q 017856 19 GKKERLLKIFEGWCDNVVDLILATDEEAIL--RRDIYDRTPIFTWGRGRVTLLGDSVHAMQP--NLGQGGCMAIEDGYQL 94 (365)
Q Consensus 19 ~~~e~l~~~~~~w~p~~~~li~~~~~~~~~--~~~~~~~~~~~~w~~grv~LiGDAAH~~~P--~~GqG~n~aieDa~~L 94 (365)
...+++++.|.. +|.+..++.......+. ..|.......++...++++++||||--.+| +.|.|++.||..+...
T Consensus 249 ~~~~~~l~~~~~-~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lA 327 (428)
T PRK10157 249 KSVPQMLEDFKQ-HPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAA 327 (428)
T ss_pred CCHHHHHHHHHh-CchHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHH
Confidence 345566666654 46666655322100010 011111122345667999999999999988 5999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHH
Q 017856 95 AVELEKACKKSNESKTPIDIVSALKSYERARRLRV 129 (365)
Q Consensus 95 a~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~ 129 (365)
|+.+.+.+... ......|..|++.-+..+
T Consensus 328 Aeai~~a~~~~------~~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 328 AKTVLSAMKSD------DFSKQKLAEYRQHLESGP 356 (428)
T ss_pred HHHHHHHHhcC------CcchhhHHHHHHHHHHhH
Confidence 99998875421 123568999998766655
No 69
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=97.02 E-value=0.0016 Score=68.91 Aligned_cols=95 Identities=21% Similarity=0.291 Sum_probs=75.2
Q ss_pred EEEcCCCCCccccEEEeecCCCCCEEEcCCCCCCCCcceEEeCCccccccceEEEEECCEEEEEEcCCCccceeeCCCCc
Q 017856 233 LVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGR 312 (365)
Q Consensus 233 l~~~~~~~~~~~~i~l~~~~~~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~~~~~~i~Dl~S~nGT~vng~~~~ 312 (365)
++-..++..+-+.|.|. ..++-+|.....+ +.|.+..+.|-.+||.|..-+|.++|+-+.----|||||.
T Consensus 360 ve~s~dG~~s~~ri~L~----~~vtEVGs~~~~~---~~iqLfGP~IqprHc~it~meGVvTvTP~~~DA~t~VnGh--- 429 (1629)
T KOG1892|consen 360 VELSPDGSDSRKRIRLQ----LSVTEVGSEKLDD---NSIQLFGPGIQPRHCDITNMEGVVTVTPRSMDAETYVNGH--- 429 (1629)
T ss_pred EEEcCCCCCcceeEEec----cCceeccccccCC---cceeeeCCCCCccccchhhccceEEecccccchhhhccce---
Confidence 33344444444778888 5568899877522 4688999999999999999999999999765667999999
Q ss_pred eeeecCCCcEEeCCCCEEEECCCceeEEEEE
Q 017856 313 RYRVSSNFPARFRPSDTIEFGSDKKAIFRVK 343 (365)
Q Consensus 313 ~~~l~~~~~~~L~~Gd~I~~G~~~~~~f~~~ 343 (365)
+|. ++..|++|+.|+||... .|+|.
T Consensus 430 --~is--qttiL~~G~~v~fGa~h--sfkF~ 454 (1629)
T KOG1892|consen 430 --RIS--QTTILQSGMKVQFGASH--SFKFV 454 (1629)
T ss_pred --ecc--hhhhhccCCEEEeccce--eEEec
Confidence 886 57899999999999984 67765
No 70
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=96.95 E-value=0.0024 Score=63.95 Aligned_cols=83 Identities=16% Similarity=0.269 Sum_probs=68.0
Q ss_pred CCCEEEcCCCCCCCCcceEEe--CCccccccceEEEEE-CCEEEEEEcCCCccceeeCCCCceeeecCCCcEEeCCCCEE
Q 017856 254 NEPYLIGSESHEDFSRTSIVI--PSAQVSKMHARISYK-DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTI 330 (365)
Q Consensus 254 ~~~~~IGR~~~~~~~~~di~l--~~~~VSr~Ha~i~~~-~~~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I 330 (365)
++.+++||.......+.|+-. +...|||+.|.|... +|.|+|..|| +--.||||. +|.+|+.+.|++..+|
T Consensus 447 k~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlG-K~~I~vng~-----~l~~gq~~~L~~nclv 520 (547)
T KOG2293|consen 447 KKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLG-KRSILVNGG-----ELDRGQKVILKNNCLV 520 (547)
T ss_pred CcceEeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCc-ceeEEeCCc-----cccCCceEEeccCcEE
Confidence 455999999986443333333 455799999999987 7889999997 778999999 9999999999999999
Q ss_pred EECCCceeEEEEEEe
Q 017856 331 EFGSDKKAIFRVKVI 345 (365)
Q Consensus 331 ~~G~~~~~~f~~~~~ 345 (365)
+|-.- .|.|++.
T Consensus 521 eIrg~---~FiF~~N 532 (547)
T KOG2293|consen 521 EIRGL---RFIFEIN 532 (547)
T ss_pred EEccc---eEEEeec
Confidence 99988 6777764
No 71
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.82 E-value=0.0098 Score=59.12 Aligned_cols=68 Identities=28% Similarity=0.255 Sum_probs=55.2
Q ss_pred ccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 61 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 61 w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
+..++++||||||-..+|+.|.|...||..+..+++.+.+.... + ...|..|++..+.....-.....
T Consensus 266 ~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~--------~-~~~l~~Y~~~~~~~~~~~~~~~~ 333 (396)
T COG0644 266 LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEG--------G-EEALAEYERLLRKSLAREDLKSL 333 (396)
T ss_pred cccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHc--------C-hhHHHHHHHHHHHHHHHHHHHHh
Confidence 77899999999999999999999999999999999999887431 1 56788888887766544443333
No 72
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.38 E-value=0.014 Score=60.15 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=70.1
Q ss_pred EEEEEcCCCCCccccEEEeecCCCCCEEEcCCCCCCCCcceEEeCCccccccceEEEEE--CCEEEEEEcCCCccceeeC
Q 017856 231 WFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTD 308 (365)
Q Consensus 231 w~l~~~~~~~~~~~~i~l~~~~~~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~--~~~~~i~Dl~S~nGT~vng 308 (365)
.+|+|..... ..|+|. .+.++|||++.. .|.|...||+..++..+ .+.+.++-|| .|-+-|||
T Consensus 15 c~l~~~~~~~---~~~~~~----~~~~~~gr~pet-------~i~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~ 79 (526)
T TIGR01663 15 CTLKPGEAEH---HFIHLD----AGALFLGRGPET-------GIRDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGG 79 (526)
T ss_pred eEecCCCCCC---CeeccC----CCceEEccCccc-------ccchhhhchhhheeeecccCceEEEEEcc-CCCcccCc
Confidence 4555554332 567777 566999999993 67899999999999877 6778899987 89999999
Q ss_pred CCCceeeecCCCcEEeCCCCEEEECCC
Q 017856 309 NEGRRYRVSSNFPARFRPSDTIEFGSD 335 (365)
Q Consensus 309 ~~~~~~~l~~~~~~~L~~Gd~I~~G~~ 335 (365)
. -+.++....|++||.+.+=..
T Consensus 80 ~-----~~~~~~~~~l~~g~~l~~v~~ 101 (526)
T TIGR01663 80 L-----ELKPGGEGELGHGDLLEIVNG 101 (526)
T ss_pred e-----EecCCCeeeecCCCEEEEecc
Confidence 9 999999999999999998776
No 73
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.23 E-value=0.03 Score=54.78 Aligned_cols=112 Identities=21% Similarity=0.173 Sum_probs=77.0
Q ss_pred HHHHHHHhcCC-CHHHHHHH-HcCCccceEEeeeeccCCCCCccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHH
Q 017856 21 KERLLKIFEGW-CDNVVDLI-LATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 98 (365)
Q Consensus 21 ~e~l~~~~~~w-~p~~~~li-~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L 98 (365)
++.+++..... ++.+++.+ ++.++..+..-+-- ..|...-.+..++|+|||-.-=+|..|-||.-|+.|+..|-+.|
T Consensus 282 ~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~-~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll 360 (509)
T KOG1298|consen 282 ATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNS-SMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLL 360 (509)
T ss_pred HHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccc-cCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHh
Confidence 45566655543 55666655 44444443322222 22323455678999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 99 EKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
.... +-.+...+.+.+..|...|++....+=.++.
T Consensus 361 ~pl~----dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~ 395 (509)
T KOG1298|consen 361 KPLP----DLSDAEKVSDYIKSFYWIRKPYSATINTLAN 395 (509)
T ss_pred cccc----ccccHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 7642 2233456788999999999997765555544
No 74
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.75 E-value=0.019 Score=58.34 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=51.6
Q ss_pred ccCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017856 61 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 137 (365)
Q Consensus 61 w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 137 (365)
...+++++|||||..+.|..++|..+++..+..|+..|... ..+ +.+++.|++..+...+.+.++-.
T Consensus 313 ~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~---------~~~-~~~~~~Yn~~~~~~~~~~~~fi~ 379 (454)
T PF04820_consen 313 FWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD---------DFS-PAALDRYNRRMRREYERIRDFIS 379 (454)
T ss_dssp SEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT---------TCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC---------CCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467999999999999999999999999888888887643 112 67999999999888887765544
No 75
>PLN02697 lycopene epsilon cyclase
Probab=95.67 E-value=0.055 Score=55.94 Aligned_cols=68 Identities=9% Similarity=0.128 Sum_probs=52.9
Q ss_pred CCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhhcCCCC---CcccHHHHHHHHHHHHHHHHH
Q 017856 63 RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK---TPIDIVSALKSYERARRLRVA 130 (365)
Q Consensus 63 ~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~~~---~~~~~~~~l~~Ye~~R~~r~~ 130 (365)
..+++++||||..++|.+|-|+..++.+|..+|+.+.+.++...... .......+++.|++.-.....
T Consensus 371 ~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~ 441 (529)
T PLN02697 371 EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERK 441 (529)
T ss_pred CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHH
Confidence 67899999999999999999999999999999999999876432000 012457889999886554443
No 76
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.36 E-value=0.13 Score=55.17 Aligned_cols=102 Identities=20% Similarity=0.330 Sum_probs=74.4
Q ss_pred CCcEEEEEcCCCCCccccEEEeecCCCCCEEEcCCCCCCCCcceEEeCCccccccceEEEEE-CCEEEEEEcCCCcccee
Q 017856 228 NGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK-DGAFYLIDLQSEHGTYV 306 (365)
Q Consensus 228 ~~~w~l~~~~~~~~~~~~i~l~~~~~~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~-~~~~~i~Dl~S~nGT~v 306 (365)
..+.||+-.........-..+-+ ....+||-... -||++..-.|-++||.|..+ +|.+++.-+-+. -++|
T Consensus 443 dDK~ylvnlnadP~lnellvyyl---~~~tlig~~~~-----~~i~l~glgi~p~h~vidI~~dg~l~~~p~~~~-R~~V 513 (1714)
T KOG0241|consen 443 DDKCYLVNLNADPALNELLVYYL---KDHTLIGLFKS-----QDIQLSGLGIQPKHCVIDIESDGELRLTPLLNA-RSCV 513 (1714)
T ss_pred ccceEEEeccCCccHHHHHHHhh---cCceeeccccC-----cceeeecCcccCccceeeeccCCcEEecccccc-eeee
Confidence 34577776654433222222221 33479997777 78999999999999999998 666888887655 8999
Q ss_pred eCCCCceeeecCCCcEEeCCCCEEEECCCceeEEEEEEecC
Q 017856 307 TDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGT 347 (365)
Q Consensus 307 ng~~~~~~~l~~~~~~~L~~Gd~I~~G~~~~~~f~~~~~~~ 347 (365)
||. .+. .+..|.+||+|-.|... -|++.+...
T Consensus 514 NGs-----~v~--~~t~L~~GdRiLwGnnH--FFrvN~PK~ 545 (1714)
T KOG0241|consen 514 NGS-----LVC--STTQLWHGDRILWGNNH--FFRVNLPKR 545 (1714)
T ss_pred cCc-----eec--cccccccCceEEecccc--eEEecCccc
Confidence 998 554 57899999999999984 477776543
No 77
>PLN02463 lycopene beta cyclase
Probab=90.38 E-value=0.55 Score=47.60 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=40.0
Q ss_pred cCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHHhhhh
Q 017856 62 GRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKK 104 (365)
Q Consensus 62 ~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~ 104 (365)
..+|++++||||-.++|.+|-|...++..+..+|+.+.+.++.
T Consensus 292 ~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 292 IPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred CCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999999999999988764
No 78
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=67.89 E-value=8.5 Score=37.87 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=35.6
Q ss_pred cCCCEEEecccccccCCCCchhhhhHHHHHHHHHHHHHH
Q 017856 62 GRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 100 (365)
Q Consensus 62 ~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~ 100 (365)
..++++.+|+||-.+.|.+|-++..+++.|..+|..|.+
T Consensus 252 ~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 252 FGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred cCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 346799999999999999999999999999999998876
No 79
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=63.47 E-value=6.1 Score=28.86 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=18.0
Q ss_pred ccceeeCCCCceeeecCCCcEEeCCCCEEEECCCceeEEEE
Q 017856 302 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRV 342 (365)
Q Consensus 302 nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~~~~~f~~ 342 (365)
+..+|||. +.-.....|++||+|.|+.. .|++
T Consensus 33 g~V~VNGe------~e~rrg~Kl~~GD~V~~~~~---~~~V 64 (65)
T PF13275_consen 33 GEVKVNGE------VETRRGKKLRPGDVVEIDGE---EYRV 64 (65)
T ss_dssp HHHEETTB----------SS----SSEEEEETTE---EEEE
T ss_pred CceEECCE------EccccCCcCCCCCEEEECCE---EEEE
Confidence 45788886 22334568999999999776 5554
No 80
>PRK11507 ribosome-associated protein; Provisional
Probab=60.82 E-value=13 Score=27.60 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=20.5
Q ss_pred ccceeeCCCCceeeecCCCcEEeCCCCEEEECCC
Q 017856 302 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 335 (365)
Q Consensus 302 nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~ 335 (365)
+...|||. +.-.....|++||+|.|.+.
T Consensus 37 g~V~VNGe------ve~rRgkKl~~GD~V~~~g~ 64 (70)
T PRK11507 37 GQVKVDGA------VETRKRCKIVAGQTVSFAGH 64 (70)
T ss_pred CceEECCE------EecccCCCCCCCCEEEECCE
Confidence 45778885 32334467999999999987
No 81
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=58.06 E-value=19 Score=26.91 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=21.8
Q ss_pred CccceeeCCCCceeeecCCCcEEeCCCCEEEECCC
Q 017856 301 EHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 335 (365)
Q Consensus 301 ~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~ 335 (365)
-+..+|||. +.--....|++||+|.|.+.
T Consensus 36 eg~V~vNGe------~EtRRgkKlr~gd~V~i~~~ 64 (73)
T COG2501 36 EGEVKVNGE------VETRRGKKLRDGDVVEIPGQ 64 (73)
T ss_pred CCeEEECCe------eeeccCCEeecCCEEEECCE
Confidence 357899996 22233468999999999998
No 82
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=44.35 E-value=75 Score=31.55 Aligned_cols=102 Identities=13% Similarity=0.273 Sum_probs=40.9
Q ss_pred CEEEcCCCCCCCCcceEEeC---------------CccccccceEEEEECC-----EEEEEEcCCCccceeeCCCC----
Q 017856 256 PYLIGSESHEDFSRTSIVIP---------------SAQVSKMHARISYKDG-----AFYLIDLQSEHGTYVTDNEG---- 311 (365)
Q Consensus 256 ~~~IGR~~~~~~~~~di~l~---------------~~~VSr~Ha~i~~~~~-----~~~i~Dl~S~nGT~vng~~~---- 311 (365)
-+-|||+.+.. .|.++. ..+|||.-|+|..+.. ..|-.-.+|.+-.|+..+.-
T Consensus 97 MFQIGRSte~~---IDFvV~dt~~G~~~~~~~~~~qStISRfACRI~~dR~pPy~ariyAAGFDss~nIfLgekA~KW~~ 173 (416)
T PF04710_consen 97 MFQIGRSTESP---IDFVVMDTVPGGQDNEDTQPTQSTISRFACRILCDRSPPYTARIYAAGFDSSRNIFLGEKAPKWKN 173 (416)
T ss_dssp EEEEES--STT----SEE---------------EEE--S-TT-EEEEEESSTT--EEEEEC---TTSEEEE-TTS-EEE-
T ss_pred hhhhccCCCCC---cCEEEeCCCCCCCcCCCCCccccchhheeEEEEeccCCCceEEEEeeccCcccceeehhccccccc
Confidence 37799988732 555553 2469999999999821 23333344555555543310
Q ss_pred ---ceeeecCCCcEEeCCC------------CEEEECCCceeEEEEEEecCCCCCCccccccccccc
Q 017856 312 ---RRYRVSSNFPARFRPS------------DTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQ 363 (365)
Q Consensus 312 ---~~~~l~~~~~~~L~~G------------d~I~~G~~~~~~f~~~~~~~~p~~~~~~~~~~~~~~ 363 (365)
.---|..+.-..+++. -+|.++.. +|.++..++.+.....-+...+||+
T Consensus 174 ~~~~~DGLTTNGVlimhP~~~f~~~s~pg~WREvSV~G~---vy~lRetRSa~~~G~~v~~E~NiL~ 237 (416)
T PF04710_consen 174 PDGEMDGLTTNGVLIMHPKGGFCEDSKPGVWREVSVCGN---VYSLRETRSAQQRGKLVENESNILQ 237 (416)
T ss_dssp TTS-EEE--SS-EEEE--------------EEEEETTSE---EEE--SSTT-SS---EETTEESB--
T ss_pred CCCCcccccccceEEEecCCCcccCCCCCeeEEEEeccc---eeeeccccccccCCcccccCCcccc
Confidence 0001111111122222 14555555 7777777777777755566667764
No 83
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=41.67 E-value=42 Score=25.36 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=27.9
Q ss_pred EecccccccCCCCchhhhhHHHHHH-HHHHHHHH
Q 017856 68 LLGDSVHAMQPNLGQGGCMAIEDGY-QLAVELEK 100 (365)
Q Consensus 68 LiGDAAH~~~P~~GqG~n~aieDa~-~La~~L~~ 100 (365)
++|-|-+.|+|..=+.+..||+||. .|....+.
T Consensus 18 mvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~ 51 (79)
T PF10819_consen 18 MVGQATMSMDPDQLEHATQAVEDAREQLSQAKSH 51 (79)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999 66666543
No 84
>PRK01777 hypothetical protein; Validated
Probab=34.66 E-value=35 Score=26.86 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=21.9
Q ss_pred CCccceeeCCCCceeeecCCCcEEeCCCCEEEECCC
Q 017856 300 SEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 335 (365)
Q Consensus 300 S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~ 335 (365)
|++-..|||+ .... ...|++||+|.|=..
T Consensus 48 ~~~~vgI~Gk-----~v~~--d~~L~dGDRVeIyrP 76 (95)
T PRK01777 48 AKNKVGIYSR-----PAKL--TDVLRDGDRVEIYRP 76 (95)
T ss_pred ccceEEEeCe-----ECCC--CCcCCCCCEEEEecC
Confidence 4567789997 5543 479999999987654
No 85
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=34.45 E-value=32 Score=26.86 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=19.3
Q ss_pred ceeeCCCCceeeecCCCcEEeCCCCEEEECC
Q 017856 304 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 334 (365)
Q Consensus 304 T~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~ 334 (365)
.+||+.+ .+...+..++|++||+|.|=.
T Consensus 62 VlvN~~d---i~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 62 VLINDTD---WELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred EEECCcc---ccccCCcccCCCCcCEEEEEC
Confidence 5677761 123346678999999998754
No 86
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=32.29 E-value=1.4e+02 Score=29.70 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=47.6
Q ss_pred ccccEEEeecCCCCCEEEcCCCCCCCCcceEEeCCccccccceEEEEECCEEEEEEcCCCccceeeCCCCceeeecCCCc
Q 017856 242 VSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP 321 (365)
Q Consensus 242 ~~~~i~l~~~~~~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~~~~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~ 321 (365)
.++.+.|+ .+.+++|- .+ |||.++-+. ..-..+..+++++++.- +.--+||||. +-..+.+
T Consensus 15 ~GrEl~Lp----~G~~tlG~-~g-----cDi~lpL~~--~~~~~L~i~e~gi~l~~--~~~~vwVnG~-----~~~~~~~ 75 (395)
T PRK15367 15 QGREVWLN----EGNLSLGE-KG-----CDICIPLTI--NEKIILREQADSLFVDA--GKARVRVNGR-----RFNPNKP 75 (395)
T ss_pred cCcEEecC----CCceeecC-CC-----ceEEEECCC--CCEEEEEEcCCcEEEec--CCceEEECCE-----EcCCCCC
Confidence 34889999 45599998 34 999886644 33344566688888752 3456899997 5544444
Q ss_pred EEeCCCCEEEECCC
Q 017856 322 ARFRPSDTIEFGSD 335 (365)
Q Consensus 322 ~~L~~Gd~I~~G~~ 335 (365)
|--+-.|.+...
T Consensus 76 --LPl~q~Ie~aG~ 87 (395)
T PRK15367 76 --LPSSGVLQVAGV 87 (395)
T ss_pred --CCCcchhhhcce
Confidence 555555655554
No 87
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=32.27 E-value=76 Score=25.24 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=23.2
Q ss_pred ceeeCCCCceeeecCCCcEEeCCCCEEEECCCceeEEEEEEe
Q 017856 304 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 345 (365)
Q Consensus 304 T~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~~~~~f~~~~~ 345 (365)
..|||. +..|. ..++.||+|+|.-... .|.+++.
T Consensus 36 V~vNG~-----~aKpS--~~VK~GD~l~i~~~~~-~~~v~Vl 69 (100)
T COG1188 36 VKVNGQ-----RAKPS--KEVKVGDILTIRFGNK-EFTVKVL 69 (100)
T ss_pred EEECCE-----Ecccc--cccCCCCEEEEEeCCc-EEEEEEE
Confidence 567887 66554 5789999998776532 4555554
No 88
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=31.42 E-value=30 Score=22.93 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=16.8
Q ss_pred CccceeeCCCCceeeecCCCcEEeCCCCEE
Q 017856 301 EHGTYVTDNEGRRYRVSSNFPARFRPSDTI 330 (365)
Q Consensus 301 ~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I 330 (365)
.++.+|||+ .+. ...+.+++||+|
T Consensus 25 ~g~V~VNg~-----~v~-~~~~~v~~~d~I 48 (48)
T PF01479_consen 25 QGRVKVNGK-----VVK-DPSYIVKPGDVI 48 (48)
T ss_dssp TTTEEETTE-----EES-STTSBESTTEEE
T ss_pred CCEEEECCE-----EEc-CCCCCCCCcCCC
Confidence 356788887 665 234678899886
No 89
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=30.15 E-value=1.2e+02 Score=29.17 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=19.6
Q ss_pred EEEECCCceeEEEEEEecCCCCCCccccccccccc
Q 017856 329 TIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQ 363 (365)
Q Consensus 329 ~I~~G~~~~~~f~~~~~~~~p~~~~~~~~~~~~~~ 363 (365)
+|.++.. +|.++..+++....---++..++||
T Consensus 219 EiSv~Gd---Vy~lRetRSaqqrG~~v~~etN~LQ 250 (429)
T KOG3842|consen 219 EISVCGD---VYSLRETRSAQQRGKLVEEETNVLQ 250 (429)
T ss_pred EEEecCc---ccccccccchhhcCccchhhccccc
Confidence 4566666 6777776665555434456666665
No 90
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=29.73 E-value=46 Score=24.46 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=18.6
Q ss_pred CccceeeCCCCceeeecCCCcEEeCCCCEEEECC
Q 017856 301 EHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 334 (365)
Q Consensus 301 ~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~ 334 (365)
..-.+||++ .+. ...+|++||+|.|=.
T Consensus 49 ~~~v~vNg~-----~v~--~~~~l~~gD~v~i~p 75 (80)
T cd00754 49 RVRIAVNGE-----YVR--LDTPLKDGDEVAIIP 75 (80)
T ss_pred cEEEEECCe-----EcC--CCcccCCCCEEEEeC
Confidence 334667776 554 457899999998743
No 91
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=29.50 E-value=41 Score=25.45 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=16.2
Q ss_pred ceeeCCCCceeeecCCCcEEeCCCCEEEECC
Q 017856 304 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 334 (365)
Q Consensus 304 T~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~ 334 (365)
.+||++ .+......+|++||+|.|=.
T Consensus 58 v~vN~~-----~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 58 ILVNGR-----NVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred EEECCE-----ecCccCCCCCCCCCEEEEeC
Confidence 455665 44333235799999998643
No 92
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=29.39 E-value=38 Score=24.04 Aligned_cols=12 Identities=8% Similarity=0.368 Sum_probs=10.2
Q ss_pred cEEeCCCCEEEE
Q 017856 321 PARFRPSDTIEF 332 (365)
Q Consensus 321 ~~~L~~Gd~I~~ 332 (365)
...|++||+|.|
T Consensus 47 ~~~L~~gD~vei 58 (65)
T PRK06944 47 ARALAAGDRLDL 58 (65)
T ss_pred cccCCCCCEEEE
Confidence 567999999976
No 93
>CHL00037 petA cytochrome f
Probab=29.09 E-value=2.1e+02 Score=27.37 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=40.6
Q ss_pred CccccccceEEEEE-CCEEEEEEcCCCccceeeCCCCceeeecCCCcEEeCCCCEEEECCC
Q 017856 276 SAQVSKMHARISYK-DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 335 (365)
Q Consensus 276 ~~~VSr~Ha~i~~~-~~~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~ 335 (365)
..+++..=..|... .|++.|+=..+.+|.-|.. .|++|-...++.||.|..|..
T Consensus 207 ~as~~G~I~~I~~~ekGg~~vti~~t~~G~~v~~------~iP~Gp~LiVs~G~~v~~~qp 261 (320)
T CHL00037 207 NATAAGIVSKILRKEKGGYEITIVDTSDGRQVVD------IIPPGPELLVSEGESIKLDQP 261 (320)
T ss_pred ccccCcEEEEEEEcCCCcEEEEEEecCCCCEEEE------eeCCCCeEEEecCceEecCCc
Confidence 44566666667665 6667666656888987776 588888889999999998875
No 94
>smart00363 S4 S4 RNA-binding domain.
Probab=28.52 E-value=69 Score=21.16 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=18.9
Q ss_pred CccceeeCCCCceeeecCCCcEEeCCCCEEEECC
Q 017856 301 EHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 334 (365)
Q Consensus 301 ~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~ 334 (365)
.++.+|||. .+. .....+..||.|.+-.
T Consensus 25 ~g~i~vng~-----~~~-~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 25 QGRVKVNGK-----KVT-KPSYIVKPGDVISVRG 52 (60)
T ss_pred cCCEEECCE-----Eec-CCCeEeCCCCEEEEcc
Confidence 346778887 551 1346788999988754
No 95
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=28.45 E-value=41 Score=23.99 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=10.2
Q ss_pred cEEeCCCCEEEE
Q 017856 321 PARFRPSDTIEF 332 (365)
Q Consensus 321 ~~~L~~Gd~I~~ 332 (365)
.+.|++||.|.+
T Consensus 46 ~~~L~~gD~vei 57 (64)
T TIGR01683 46 DTILKEGDRIEI 57 (64)
T ss_pred ceecCCCCEEEE
Confidence 568999999876
No 96
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=27.33 E-value=1.3e+02 Score=22.42 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=23.4
Q ss_pred ccceeeCCCCceeeecCCCcEEeCCCCEEEECCCceeEEEEEE
Q 017856 302 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 344 (365)
Q Consensus 302 nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~~~~~f~~~~ 344 (365)
+||.+.| ++.. -.++.||.+.+..... ...++.
T Consensus 13 ~g~vv~G------~v~~---G~i~~G~~v~i~P~~~-~~~V~s 45 (82)
T cd04089 13 MGTVVLG------KVES---GTIKKGDKLLVMPNKT-QVEVLS 45 (82)
T ss_pred CCEEEEE------EEee---eEEecCCEEEEeCCCc-EEEEEE
Confidence 4999988 5653 4799999999998632 344443
No 97
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=27.11 E-value=63 Score=22.53 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=15.5
Q ss_pred cceeeCCCCceeeecCCCcEEeCCCCEEEE
Q 017856 303 GTYVTDNEGRRYRVSSNFPARFRPSDTIEF 332 (365)
Q Consensus 303 GT~vng~~~~~~~l~~~~~~~L~~Gd~I~~ 332 (365)
..+|||. .+. ...+.|..||.|.|
T Consensus 35 ~V~VNg~-----~~~-~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGE-----LEN-RRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCE-----Ecc-CCCCCCCCCCEEEe
Confidence 3556665 432 22468999999976
No 98
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=26.31 E-value=40 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=15.7
Q ss_pred ccceeeCCCCceeeecCCCcEEeCCCCEEEE
Q 017856 302 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEF 332 (365)
Q Consensus 302 nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~ 332 (365)
||.+|... . -....|++||.|.+
T Consensus 37 Ng~iv~r~-----~---~~~~~l~~gD~vei 59 (66)
T PRK05659 37 NGEIVPRS-----Q---HASTALREGDVVEI 59 (66)
T ss_pred CCeEeCHH-----H---cCcccCCCCCEEEE
Confidence 56666543 1 23578999999976
No 99
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=25.39 E-value=42 Score=23.96 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=10.4
Q ss_pred cEEeCCCCEEEE
Q 017856 321 PARFRPSDTIEF 332 (365)
Q Consensus 321 ~~~L~~Gd~I~~ 332 (365)
.+.|++||.|.|
T Consensus 47 ~~~L~dgD~Iei 58 (65)
T PRK06488 47 QFVLHEGDRIEI 58 (65)
T ss_pred ccccCCCCEEEE
Confidence 578999999986
No 100
>PF02626 AHS2: Allophanate hydrolase subunit 2; InterPro: IPR003778 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 2 of allophanate hydrolase (AHS2) which is found in urea carboxylase.; PDB: 3MML_G 3VA7_A 3OEP_A 3OPF_C 3ORE_B.
Probab=24.93 E-value=96 Score=29.28 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCCccceeeCCCCceeeecCCCcEEeCCCCEEEECCC
Q 017856 299 QSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 335 (365)
Q Consensus 299 ~S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~ 335 (365)
|..-...|||+ ++.....+.++.||+|+||..
T Consensus 52 Ga~~~~~lng~-----~~~~~~~~~v~~Gd~L~~~~~ 83 (271)
T PF02626_consen 52 GADFEATLNGK-----PVPMWQPFLVKAGDVLKFGPP 83 (271)
T ss_dssp ESCEEEEETTE-----EE-TTSEEEE-TT-EEEEEEE
T ss_pred CCCCceEECCE-----EccCCEEEEECCCCEEEecCC
Confidence 34455668888 999999999999999999985
No 101
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=24.89 E-value=48 Score=23.82 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=10.6
Q ss_pred CcEEeCCCCEEEE
Q 017856 320 FPARFRPSDTIEF 332 (365)
Q Consensus 320 ~~~~L~~Gd~I~~ 332 (365)
..+.|++||.|.+
T Consensus 47 ~~~~L~~gD~Iei 59 (66)
T PRK08053 47 AQHIVQDGDQILL 59 (66)
T ss_pred CccccCCCCEEEE
Confidence 4568999999976
No 102
>PRK06437 hypothetical protein; Provisional
Probab=24.69 E-value=72 Score=23.12 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=15.4
Q ss_pred ceeeCCCCceeeecCCCcEEeCCCCEEEE
Q 017856 304 TYVTDNEGRRYRVSSNFPARFRPSDTIEF 332 (365)
Q Consensus 304 T~vng~~~~~~~l~~~~~~~L~~Gd~I~~ 332 (365)
..+||. .++ ....|++||.|.+
T Consensus 39 V~vNg~-----iv~--~~~~L~dgD~Vei 60 (67)
T PRK06437 39 VIVNGS-----PVL--EDHNVKKEDDVLI 60 (67)
T ss_pred EEECCE-----ECC--CceEcCCCCEEEE
Confidence 446665 443 4578999999976
No 103
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=24.39 E-value=1.7e+02 Score=27.84 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=24.6
Q ss_pred CCccceeeCCCCceeeecCCCcEEeCCCCEEEECCCc
Q 017856 300 SEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDK 336 (365)
Q Consensus 300 S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~~ 336 (365)
-.-...||++ ++.....+.++.||+++||..+
T Consensus 53 A~~~~~ln~~-----~~~~~~~~~v~~Gd~L~~g~~~ 84 (280)
T smart00797 53 ADFPATLDGQ-----PVPPWKPFLVRAGQVLSLGAPK 84 (280)
T ss_pred CCCeeeECCE-----EcCCCeEEEECCCCEEEeCCCC
Confidence 3344557777 7777888999999999999753
No 104
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=24.06 E-value=1.9e+02 Score=27.91 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=35.0
Q ss_pred eEEEEECCEEEEEEcCCCccceeeCCCCceeeecCCCcEEeCCCCEEEECCCc
Q 017856 284 ARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDK 336 (365)
Q Consensus 284 a~i~~~~~~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~~ 336 (365)
..+++..+.++..= |-.-...+||. .+.+..++.++.||+++||..+
T Consensus 59 ~t~~f~~~~~ialT-Gad~~a~ld~~-----~i~~~~~~~vk~Gq~L~~g~~~ 105 (314)
T COG1984 59 PTLEFTSDALIALT-GADCEATLDGQ-----EVPPWSPYLVKAGQTLKLGRPK 105 (314)
T ss_pred eEEEEecCcEEEEe-CCcccceECCE-----EcCCCceEEccCCCEEEecCCC
Confidence 35566644443332 45556779998 9999999999999999999864
No 105
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=23.18 E-value=70 Score=22.78 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=10.2
Q ss_pred cEEeCCCCEEEE
Q 017856 321 PARFRPSDTIEF 332 (365)
Q Consensus 321 ~~~L~~Gd~I~~ 332 (365)
...|++||.|.|
T Consensus 47 ~~~L~~gD~V~i 58 (65)
T cd00565 47 STPLQDGDRIEI 58 (65)
T ss_pred ceecCCCCEEEE
Confidence 478999999976
No 106
>PF05123 S_layer_N: S-layer like family, N-terminal region ; InterPro: IPR022650 This entry represents the N-terminal domain of archael S-layer proteins. Members of this family are found in (for example) Pyrococcus horikoshii (split into two tandem reading frames), Methanocaldococcus jannaschii (Methanococcus jannaschii), and related species. Some local similarity can be found to other S-layer protein families. This entry is found in association with PF05124 from PFAM
Probab=22.81 E-value=2.2e+02 Score=27.22 Aligned_cols=46 Identities=9% Similarity=0.306 Sum_probs=37.9
Q ss_pred cceEEEEECCEEEEEEcCCCccceeeCCCCceeeecCCCcEEeCCCCEEEECCC
Q 017856 282 MHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 335 (365)
Q Consensus 282 ~Ha~i~~~~~~~~i~Dl~S~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~ 335 (365)
.--+|-+-+..|.|.++++-++.++=|. ... ...++.|+.+.||+.
T Consensus 240 ~G~~ipfLG~ey~iv~id~d~d~i~lG~-----~~y---~g~ikeGesy~lGnG 285 (290)
T PF05123_consen 240 PGMRIPFLGEEYVIVKIDTDDDIIYLGK-----EVY---DGVIKEGESYDLGNG 285 (290)
T ss_pred cCceeeecCceEEEEEecCCCCEEEecc-----ccc---eeEeecCCEEEccCC
Confidence 3446777789999999999999999887 443 468999999999997
No 107
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=22.21 E-value=59 Score=23.52 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=7.7
Q ss_pred cEEeCCCCEEEE
Q 017856 321 PARFRPSDTIEF 332 (365)
Q Consensus 321 ~~~L~~Gd~I~~ 332 (365)
.+.|++||.|.|
T Consensus 56 ~~~l~~GD~i~~ 67 (68)
T PF14478_consen 56 SYKLKDGDKITW 67 (68)
T ss_dssp C-B--TTEEEEE
T ss_pred eeEeCCCCEEEe
Confidence 578999999986
No 108
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=21.68 E-value=1.5e+02 Score=22.20 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=24.9
Q ss_pred CEEEEEEcCC------CccceeeCCCCceeeecCCCcEEeCCCCEEEECCC
Q 017856 291 GAFYLIDLQS------EHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 335 (365)
Q Consensus 291 ~~~~i~Dl~S------~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~G~~ 335 (365)
++|||.|..+ ..|.||-.. . ...+..||.|++-..
T Consensus 16 ~GffiQd~~~d~~~~ts~gifV~~~-----~-----~~~~~~Gd~V~vtG~ 56 (78)
T cd04486 16 GGFYIQDEDGDGDPATSEGIFVYTG-----S-----GADVAVGDLVRVTGT 56 (78)
T ss_pred CEEEEEcCCCCCCCcccceEEEecC-----C-----CCCCCCCCEEEEEEE
Confidence 6799999632 567888553 1 356889999998654
No 109
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=21.40 E-value=50 Score=25.32 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=17.1
Q ss_pred CccceeeCCCCceeeecCCCcEEeCCCCEEEE
Q 017856 301 EHGTYVTDNEGRRYRVSSNFPARFRPSDTIEF 332 (365)
Q Consensus 301 ~nGT~vng~~~~~~~l~~~~~~~L~~Gd~I~~ 332 (365)
.||++|... . -..+.|++||.|.+
T Consensus 54 vNg~iVpr~-----~---w~~t~L~egD~IEI 77 (84)
T PRK06083 54 INNQVVPRS-----E---WQSTVLSSGDAISL 77 (84)
T ss_pred ECCEEeCHH-----H---cCcccCCCCCEEEE
Confidence 577777554 2 24678999999976
No 110
>PF12538 FtsK_SpoIIIE_N: DNA transporter ; InterPro: IPR022206 This domain family is found in bacteria, and is typically between 107 and 121 amino acids in length. The family is found in association with PF01580 from PFAM. The FtsK/SpoIIIE family of DNA transporters are responsible for translocating missegregated chromosomes after the completion of cell division. ; PDB: 1WV3_A.
Probab=21.15 E-value=2.7e+02 Score=22.29 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=18.9
Q ss_pred ccEEEeecCCCCCEEEcCCCCCCCCcceEEeCCccccccceEEEEECC
Q 017856 244 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG 291 (365)
Q Consensus 244 ~~i~l~~~~~~~~~~IGR~~~~~~~~~di~l~~~~VSr~Ha~i~~~~~ 291 (365)
..+.|. ..++++++||-... ++|.+++- .....|.++++
T Consensus 11 qk~~L~-~~~~k~vtIG~~~~-----~~ITi~~l---~~~I~l~~~~~ 49 (113)
T PF12538_consen 11 QKYELS-PKEDKTVTIGNDEK-----ADITIPSL---EEPITLKWDED 49 (113)
T ss_dssp EEEE---T--T--EEEES-TT-----SSEE-TT-------EEEEE-T-
T ss_pred EEEECC-cccCccEEECCCcc-----ccEEccCC---CccEEEEEccc
Confidence 456777 55568899999999 88988776 44555566554
No 111
>TIGR00724 urea_amlyse_rel biotin-dependent carboxylase uncharacterized domain. Urea amidolyase of Saccharomyces cerevisiae is a 1835 amino acid protein with an amidase domain, a biotin/lipoyl cofactor attachment domain, a carbamoyl-phosphate synthase L chain-like domain, and uncharacterized regions. It has both urea carboxylase and allophanate hydrolase activities. This alignment models a domain that represents uncharacterized prokaryotic proteins of about 300 amino acids, regions of prokaryotic urea carboxylase and of the urea carboxylase region of yeast urea amidolyase, and regions of other biotin-containing proteins.
Probab=20.80 E-value=2.3e+02 Score=27.45 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=24.7
Q ss_pred CCCccceeeCCCCceeeecC-CCcEEeCCCCEEEECCCc
Q 017856 299 QSEHGTYVTDNEGRRYRVSS-NFPARFRPSDTIEFGSDK 336 (365)
Q Consensus 299 ~S~nGT~vng~~~~~~~l~~-~~~~~L~~Gd~I~~G~~~ 336 (365)
|-.-...|||+ ++.+ ...+.++.||+++||..+
T Consensus 74 GA~~~~~lng~-----~~~~~~~~~~v~~Gd~L~~g~~~ 107 (314)
T TIGR00724 74 GADTDLCLNDG-----QVIPQWRPYEVKRGQILSLGRLK 107 (314)
T ss_pred CCCCcceeCCc-----ccCCCceEEEECCCCEEEeCCCC
Confidence 34456778887 7755 667899999999999753
No 112
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=20.00 E-value=55 Score=23.75 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=16.1
Q ss_pred cceeeCCCCceeeecC-CCcEEeCCCCEEEE
Q 017856 303 GTYVTDNEGRRYRVSS-NFPARFRPSDTIEF 332 (365)
Q Consensus 303 GT~vng~~~~~~~l~~-~~~~~L~~Gd~I~~ 332 (365)
-.+||++ .+.. +....|++||.|.|
T Consensus 45 ~v~vN~~-----~v~~~~~~~~l~~gD~V~i 70 (77)
T PF02597_consen 45 AVAVNGE-----IVPDDGLDTPLKDGDEVAI 70 (77)
T ss_dssp EEEETTE-----EEGGGTTTSBEETTEEEEE
T ss_pred EEEECCE-----EcCCccCCcCcCCCCEEEE
Confidence 3455665 4443 33578999999876
Done!