Query 017858
Match_columns 365
No_of_seqs 284 out of 2194
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.9E-53 1.5E-57 422.7 15.7 338 1-345 261-650 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.8E-49 4E-54 416.3 34.8 361 1-364 296-660 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.7E-30 3.7E-35 235.2 6.2 173 1-173 101-284 (287)
4 KOG0617 Ras suppressor protein 99.2 7.8E-13 1.7E-17 105.4 -3.0 123 228-361 70-196 (264)
5 KOG0617 Ras suppressor protein 99.0 2.3E-11 4.9E-16 97.1 -2.9 85 256-348 49-138 (264)
6 KOG0444 Cytoskeletal regulator 99.0 1E-10 2.2E-15 110.4 -0.3 107 233-348 74-184 (1255)
7 PRK04841 transcriptional regul 98.9 3.5E-08 7.6E-13 103.4 15.7 200 2-210 122-335 (903)
8 PLN00113 leucine-rich repeat r 98.8 6.7E-09 1.5E-13 109.5 6.6 75 289-364 161-239 (968)
9 PLN00113 leucine-rich repeat r 98.8 1.3E-08 2.8E-13 107.4 7.2 120 236-364 92-215 (968)
10 PF14580 LRR_9: Leucine-rich r 98.7 1.2E-08 2.7E-13 84.1 3.1 105 237-355 19-129 (175)
11 KOG0472 Leucine-rich repeat pr 98.6 3.1E-09 6.7E-14 95.7 -1.2 88 253-348 425-539 (565)
12 PF13855 LRR_8: Leucine rich r 98.6 2.9E-08 6.3E-13 67.2 3.8 57 292-348 1-60 (61)
13 PF14580 LRR_9: Leucine-rich r 98.6 2.5E-08 5.4E-13 82.3 3.6 96 259-364 15-116 (175)
14 KOG0444 Cytoskeletal regulator 98.6 2.1E-09 4.6E-14 101.8 -3.1 101 256-364 215-319 (1255)
15 KOG4658 Apoptotic ATPase [Sign 98.6 1.7E-08 3.7E-13 103.1 3.1 97 262-365 544-646 (889)
16 KOG0472 Leucine-rich repeat pr 98.6 3.4E-09 7.3E-14 95.4 -2.6 66 283-348 218-286 (565)
17 PLN03210 Resistant to P. syrin 98.5 2.6E-07 5.7E-12 98.6 8.1 99 256-364 795-896 (1153)
18 KOG4194 Membrane glycoprotein 98.4 1.5E-07 3.3E-12 88.8 3.0 120 233-364 121-248 (873)
19 PF12799 LRR_4: Leucine Rich r 98.3 3.1E-07 6.7E-12 57.3 2.5 42 314-357 1-42 (44)
20 PLN03150 hypothetical protein; 98.3 4.7E-07 1E-11 90.4 5.1 88 256-350 435-528 (623)
21 KOG4194 Membrane glycoprotein 98.3 5.5E-08 1.2E-12 91.7 -1.6 118 236-364 268-395 (873)
22 PF13855 LRR_8: Leucine rich r 98.3 7.2E-07 1.6E-11 60.3 4.1 56 263-326 1-61 (61)
23 KOG1259 Nischarin, modulator o 98.3 1.2E-07 2.5E-12 82.7 -1.0 87 259-355 325-415 (490)
24 PLN03150 hypothetical protein; 98.2 2.7E-06 6E-11 84.9 7.2 88 264-359 419-512 (623)
25 KOG1259 Nischarin, modulator o 98.2 5.8E-07 1.3E-11 78.4 0.9 112 239-364 286-402 (490)
26 KOG0618 Serine/threonine phosp 98.1 3.1E-07 6.8E-12 90.9 -1.5 81 259-348 379-463 (1081)
27 KOG0618 Serine/threonine phosp 98.1 2.6E-07 5.6E-12 91.5 -2.7 87 260-356 42-131 (1081)
28 PRK15387 E3 ubiquitin-protein 98.0 9.3E-06 2E-10 81.9 6.5 33 316-348 424-456 (788)
29 KOG0532 Leucine-rich repeat (L 98.0 1.4E-07 3.1E-12 88.6 -5.8 55 294-348 145-200 (722)
30 PF12799 LRR_4: Leucine Rich r 98.0 4E-06 8.6E-11 52.3 2.3 39 292-330 1-40 (44)
31 PRK15370 E3 ubiquitin-protein 97.9 1.5E-05 3.3E-10 80.6 6.6 58 293-355 263-320 (754)
32 PRK15387 E3 ubiquitin-protein 97.9 8.1E-06 1.7E-10 82.3 3.8 74 283-364 374-448 (788)
33 KOG4237 Extracellular matrix p 97.8 1.1E-06 2.4E-11 79.3 -3.0 115 238-364 68-191 (498)
34 PRK15370 E3 ubiquitin-protein 97.8 3.6E-05 7.9E-10 77.9 6.7 101 238-356 200-300 (754)
35 KOG0532 Leucine-rich repeat (L 97.7 4.8E-06 1E-10 78.7 -0.8 104 239-355 145-250 (722)
36 COG2909 MalT ATP-dependent tra 97.7 0.00034 7.4E-09 69.6 11.3 195 2-211 130-342 (894)
37 COG4886 Leucine-rich repeat (L 97.6 1.8E-05 3.9E-10 75.0 1.4 101 237-348 116-220 (394)
38 TIGR00635 ruvB Holliday juncti 97.6 0.0013 2.7E-08 60.1 12.2 151 29-193 130-294 (305)
39 COG4886 Leucine-rich repeat (L 97.5 3.9E-05 8.4E-10 72.7 1.9 96 258-363 158-257 (394)
40 KOG4579 Leucine-rich repeat (L 97.5 4.5E-06 9.7E-11 64.7 -3.6 86 260-355 50-139 (177)
41 PRK00080 ruvB Holliday junctio 97.5 0.00021 4.5E-09 65.9 5.9 156 29-191 151-313 (328)
42 KOG4237 Extracellular matrix p 97.4 4.7E-05 1E-09 69.1 0.6 85 255-347 266-356 (498)
43 COG3903 Predicted ATPase [Gene 97.4 8.4E-05 1.8E-09 68.2 1.9 205 1-210 88-317 (414)
44 KOG3207 Beta-tubulin folding c 97.3 6.9E-05 1.5E-09 68.8 0.6 60 289-348 243-312 (505)
45 KOG0531 Protein phosphatase 1, 97.2 0.00012 2.6E-09 69.8 1.7 104 234-348 92-197 (414)
46 KOG4579 Leucine-rich repeat (L 97.2 2.8E-05 6.1E-10 60.4 -2.2 88 236-333 52-142 (177)
47 KOG1644 U2-associated snRNP A' 97.2 0.0009 1.9E-08 55.6 5.6 97 238-346 43-149 (233)
48 KOG1859 Leucine-rich repeat pr 97.1 5.6E-05 1.2E-09 73.7 -2.3 84 256-348 180-265 (1096)
49 PF05729 NACHT: NACHT domain 97.0 0.0019 4.2E-08 52.7 6.6 69 1-69 81-163 (166)
50 PRK06893 DNA replication initi 96.9 0.003 6.6E-08 55.0 7.4 92 4-97 94-200 (229)
51 PF01637 Arch_ATPase: Archaeal 96.9 0.0051 1.1E-07 53.3 8.9 96 2-99 119-233 (234)
52 KOG0531 Protein phosphatase 1, 96.9 0.00042 9.1E-09 66.1 1.9 88 258-356 90-179 (414)
53 cd00116 LRR_RI Leucine-rich re 96.8 0.00033 7.1E-09 64.1 0.5 109 237-348 108-232 (319)
54 PF00560 LRR_1: Leucine Rich R 96.8 0.00067 1.5E-08 35.3 1.2 21 315-335 1-21 (22)
55 KOG1859 Leucine-rich repeat pr 96.7 0.00018 4E-09 70.2 -2.2 61 293-356 165-226 (1096)
56 KOG1644 U2-associated snRNP A' 96.7 0.0024 5.1E-08 53.2 4.3 78 263-348 42-124 (233)
57 KOG2739 Leucine-rich acidic nu 96.7 0.0012 2.6E-08 57.0 2.5 84 258-346 60-152 (260)
58 cd00116 LRR_RI Leucine-rich re 96.6 0.00074 1.6E-08 61.8 1.0 110 237-349 137-262 (319)
59 KOG3665 ZYG-1-like serine/thre 96.5 0.00081 1.8E-08 67.7 1.0 104 236-348 147-261 (699)
60 TIGR03015 pepcterm_ATPase puta 96.4 0.094 2E-06 46.7 13.3 103 1-104 123-242 (269)
61 KOG3207 Beta-tubulin folding c 96.4 0.00039 8.5E-09 64.0 -2.1 108 234-348 169-282 (505)
62 KOG3665 ZYG-1-like serine/thre 96.4 0.0017 3.8E-08 65.3 2.1 85 257-348 142-231 (699)
63 PRK15386 type III secretion pr 96.1 0.0072 1.6E-07 56.6 4.2 85 259-360 48-137 (426)
64 PRK15386 type III secretion pr 96.0 0.0071 1.5E-07 56.6 4.2 79 237-334 52-135 (426)
65 KOG2123 Uncharacterized conser 95.6 0.00044 9.6E-09 60.2 -5.1 96 236-343 18-123 (388)
66 COG3899 Predicted ATPase [Gene 95.5 0.094 2E-06 54.5 10.1 158 48-208 211-387 (849)
67 PF13504 LRR_7: Leucine rich r 95.4 0.0087 1.9E-07 28.8 1.2 15 315-329 2-16 (17)
68 PRK00411 cdc6 cell division co 95.3 0.47 1E-05 44.9 13.6 180 2-188 139-358 (394)
69 KOG2982 Uncharacterized conser 95.2 0.0066 1.4E-07 53.6 0.5 63 259-326 93-158 (418)
70 PF00560 LRR_1: Leucine Rich R 95.1 0.0079 1.7E-07 31.2 0.5 21 338-360 1-22 (22)
71 PRK09087 hypothetical protein; 95.0 0.22 4.7E-06 43.3 9.4 91 4-98 90-193 (226)
72 PF13504 LRR_7: Leucine rich r 94.7 0.022 4.7E-07 27.4 1.4 16 293-308 2-17 (17)
73 KOG2739 Leucine-rich acidic nu 94.6 0.018 4E-07 49.8 1.7 82 258-348 38-127 (260)
74 PRK07471 DNA polymerase III su 94.6 0.85 1.9E-05 42.6 12.9 92 2-99 142-237 (365)
75 TIGR03420 DnaA_homol_Hda DnaA 94.5 0.17 3.7E-06 43.7 7.8 95 4-100 93-201 (226)
76 TIGR00678 holB DNA polymerase 94.0 0.43 9.3E-06 40.0 9.0 87 2-96 97-187 (188)
77 PRK05564 DNA polymerase III su 93.7 1.6 3.6E-05 39.8 12.9 88 4-97 96-187 (313)
78 PF13173 AAA_14: AAA domain 93.7 0.11 2.4E-06 40.5 4.5 60 2-61 62-127 (128)
79 PRK08727 hypothetical protein; 93.4 0.43 9.3E-06 41.6 8.1 92 3-96 95-200 (233)
80 KOG2123 Uncharacterized conser 93.3 0.0036 7.8E-08 54.7 -4.9 82 261-350 17-101 (388)
81 smart00369 LRR_TYP Leucine-ric 93.3 0.055 1.2E-06 29.1 1.5 19 314-332 2-20 (26)
82 smart00370 LRR Leucine-rich re 93.3 0.055 1.2E-06 29.1 1.5 19 314-332 2-20 (26)
83 PF13306 LRR_5: Leucine rich r 93.2 0.26 5.7E-06 38.1 5.8 110 237-364 12-129 (129)
84 KOG2982 Uncharacterized conser 93.1 0.03 6.5E-07 49.6 0.3 15 235-249 95-109 (418)
85 KOG1909 Ran GTPase-activating 92.9 0.019 4.2E-07 51.7 -1.1 110 237-349 185-310 (382)
86 PRK06645 DNA polymerase III su 92.9 0.83 1.8E-05 44.6 9.8 93 2-96 129-225 (507)
87 TIGR02397 dnaX_nterm DNA polym 92.8 3 6.5E-05 38.7 13.4 95 3-99 119-217 (355)
88 PRK14961 DNA polymerase III su 92.6 3.5 7.5E-05 38.6 13.4 92 3-96 121-216 (363)
89 PRK13342 recombination factor 92.5 3.3 7.1E-05 39.5 13.3 96 1-99 92-195 (413)
90 PRK14963 DNA polymerase III su 92.4 2.1 4.5E-05 42.0 11.9 94 2-97 117-214 (504)
91 PF13306 LRR_5: Leucine rich r 92.3 0.44 9.6E-06 36.8 6.1 93 254-360 3-103 (129)
92 KOG1909 Ran GTPase-activating 92.2 0.1 2.3E-06 47.2 2.5 116 230-348 150-281 (382)
93 PRK08084 DNA replication initi 91.8 0.89 1.9E-05 39.7 7.9 92 4-97 100-206 (235)
94 smart00370 LRR Leucine-rich re 91.8 0.098 2.1E-06 28.1 1.2 21 291-311 1-21 (26)
95 smart00369 LRR_TYP Leucine-ric 91.8 0.098 2.1E-06 28.1 1.2 21 291-311 1-21 (26)
96 PF14516 AAA_35: AAA-like doma 91.3 9.9 0.00021 35.0 14.6 53 49-107 194-246 (331)
97 PRK00440 rfc replication facto 91.2 4 8.7E-05 37.1 12.1 92 3-96 104-199 (319)
98 PRK06620 hypothetical protein; 91.2 1.5 3.3E-05 37.6 8.6 87 4-94 88-183 (214)
99 TIGR02928 orc1/cdc6 family rep 90.9 12 0.00025 34.9 15.0 181 2-189 130-351 (365)
100 PRK07003 DNA polymerase III su 90.8 4.8 0.0001 41.2 12.5 95 3-99 121-220 (830)
101 KOG0473 Leucine-rich repeat pr 90.7 0.0072 1.6E-07 51.5 -5.9 85 256-348 35-122 (326)
102 PRK09112 DNA polymerase III su 90.5 2.4 5.1E-05 39.5 9.7 93 2-98 142-238 (351)
103 PRK12402 replication factor C 89.9 2.3 5.1E-05 39.1 9.4 93 3-97 127-223 (337)
104 PRK05642 DNA replication initi 89.7 2.2 4.8E-05 37.1 8.5 92 4-97 100-205 (234)
105 PRK14087 dnaA chromosomal repl 89.5 1.7 3.7E-05 41.9 8.3 98 4-101 209-320 (450)
106 PF00308 Bac_DnaA: Bacterial d 89.5 1.3 2.9E-05 38.1 6.9 89 4-94 100-202 (219)
107 PRK08903 DnaA regulatory inact 89.0 2.8 6E-05 36.2 8.6 99 4-104 93-203 (227)
108 PLN03025 replication factor C 87.3 3 6.5E-05 38.2 8.1 91 3-95 101-195 (319)
109 COG1373 Predicted ATPase (AAA+ 86.9 2.4 5.2E-05 40.2 7.3 92 1-99 94-191 (398)
110 smart00364 LRR_BAC Leucine-ric 86.8 0.43 9.2E-06 25.7 1.3 17 315-331 3-19 (26)
111 KOG2120 SCF ubiquitin ligase, 86.6 0.085 1.8E-06 46.8 -2.3 57 292-348 286-349 (419)
112 PRK05707 DNA polymerase III su 86.4 5.1 0.00011 36.9 9.0 89 4-98 109-201 (328)
113 PRK14959 DNA polymerase III su 86.3 4.7 0.0001 40.3 9.2 101 2-104 120-225 (624)
114 PRK14960 DNA polymerase III su 85.7 6 0.00013 39.9 9.5 94 2-97 119-216 (702)
115 COG2256 MGS1 ATPase related to 85.4 3.2 6.9E-05 38.8 7.0 93 1-96 104-208 (436)
116 PRK12323 DNA polymerase III su 85.2 5.1 0.00011 40.2 8.8 94 2-97 125-222 (700)
117 PRK14957 DNA polymerase III su 84.9 7.3 0.00016 38.5 9.7 99 2-102 120-223 (546)
118 KOG0473 Leucine-rich repeat pr 84.9 0.041 8.8E-07 47.1 -4.9 74 289-364 39-114 (326)
119 PRK14956 DNA polymerase III su 84.7 33 0.00072 33.3 13.7 91 3-95 123-217 (484)
120 PRK07940 DNA polymerase III su 84.5 7.6 0.00017 36.7 9.4 88 3-97 119-210 (394)
121 PRK14962 DNA polymerase III su 84.4 8.1 0.00018 37.5 9.7 101 2-104 118-223 (472)
122 PRK14955 DNA polymerase III su 84.1 3.4 7.4E-05 39.2 7.0 92 2-95 128-223 (397)
123 PRK14971 DNA polymerase III su 83.2 7.8 0.00017 39.0 9.3 91 3-95 123-217 (614)
124 PRK08451 DNA polymerase III su 82.9 13 0.00029 36.6 10.5 94 2-97 118-215 (535)
125 PRK09111 DNA polymerase III su 82.9 34 0.00073 34.4 13.5 94 3-98 134-231 (598)
126 PRK08691 DNA polymerase III su 82.7 7.2 0.00016 39.5 8.7 94 2-97 120-217 (709)
127 PRK14964 DNA polymerase III su 82.2 10 0.00022 36.9 9.4 92 3-96 118-213 (491)
128 smart00365 LRR_SD22 Leucine-ri 81.9 1.1 2.3E-05 24.2 1.5 16 314-329 2-17 (26)
129 PRK14970 DNA polymerase III su 81.9 8.7 0.00019 35.9 8.7 92 2-95 109-204 (367)
130 PRK07764 DNA polymerase III su 81.8 43 0.00093 35.1 14.2 91 3-95 122-216 (824)
131 PRK06090 DNA polymerase III su 81.6 25 0.00055 32.2 11.3 85 4-98 111-199 (319)
132 PRK14949 DNA polymerase III su 81.4 10 0.00022 39.7 9.3 94 2-97 120-217 (944)
133 PRK14951 DNA polymerase III su 81.3 15 0.00032 37.0 10.3 93 3-97 126-222 (618)
134 PRK06305 DNA polymerase III su 81.1 8.7 0.00019 37.1 8.5 97 2-100 122-223 (451)
135 PRK04195 replication factor C 80.2 47 0.001 32.4 13.4 93 2-98 99-200 (482)
136 PF02463 SMC_N: RecF/RecN/SMC 79.4 2.1 4.6E-05 36.7 3.4 43 4-46 161-206 (220)
137 TIGR02903 spore_lon_C ATP-depe 78.5 8.2 0.00018 38.9 7.7 86 16-103 309-398 (615)
138 PRK14954 DNA polymerase III su 78.4 18 0.00038 36.5 9.9 95 2-98 128-227 (620)
139 PRK14950 DNA polymerase III su 78.2 21 0.00045 35.9 10.4 95 2-98 121-219 (585)
140 PRK07994 DNA polymerase III su 78.2 12 0.00026 37.8 8.6 97 2-100 120-221 (647)
141 PRK13341 recombination factor 78.0 12 0.00026 38.5 8.7 90 2-94 110-211 (725)
142 TIGR00362 DnaA chromosomal rep 77.3 13 0.00027 35.4 8.3 91 4-96 202-306 (405)
143 PRK07133 DNA polymerase III su 77.1 23 0.00049 36.3 10.2 98 2-101 119-221 (725)
144 PRK08769 DNA polymerase III su 77.1 19 0.00041 33.0 9.0 88 3-98 115-206 (319)
145 KOG0989 Replication factor C, 76.6 8.8 0.00019 34.6 6.4 88 4-93 132-223 (346)
146 PRK14969 DNA polymerase III su 76.4 19 0.0004 35.6 9.4 98 2-101 120-222 (527)
147 PRK06964 DNA polymerase III su 76.2 62 0.0013 30.0 12.1 84 4-97 135-222 (342)
148 PRK14953 DNA polymerase III su 75.5 37 0.00081 33.2 11.0 94 2-97 120-217 (486)
149 PRK14086 dnaA chromosomal repl 75.2 16 0.00034 36.6 8.4 88 4-93 380-481 (617)
150 PF13516 LRR_6: Leucine Rich r 74.8 1.9 4.1E-05 22.4 1.2 13 314-326 2-14 (24)
151 TIGR01242 26Sp45 26S proteasom 74.6 9.4 0.0002 35.7 6.6 89 3-94 217-328 (364)
152 PRK00149 dnaA chromosomal repl 74.5 15 0.00031 35.6 8.0 114 4-119 214-349 (450)
153 PRK06647 DNA polymerase III su 74.4 32 0.00069 34.3 10.4 93 3-97 121-217 (563)
154 PRK05896 DNA polymerase III su 74.1 21 0.00046 35.7 9.0 97 4-102 122-223 (605)
155 PRK07399 DNA polymerase III su 73.5 38 0.00083 31.0 10.0 92 2-98 125-219 (314)
156 PRK14958 DNA polymerase III su 72.2 27 0.00058 34.4 9.2 93 3-97 121-217 (509)
157 PRK12422 chromosomal replicati 71.2 20 0.00043 34.6 8.0 87 4-92 205-305 (445)
158 PRK04132 replication factor C 70.9 39 0.00084 35.4 10.3 92 3-96 632-727 (846)
159 COG0593 DnaA ATPase involved i 70.2 24 0.00052 33.4 8.0 116 4-119 178-313 (408)
160 COG5238 RNA1 Ran GTPase-activa 68.7 9.6 0.00021 33.9 4.7 119 230-348 85-225 (388)
161 PF06144 DNA_pol3_delta: DNA p 68.2 34 0.00073 27.7 7.9 95 2-98 58-164 (172)
162 PRK14088 dnaA chromosomal repl 68.2 26 0.00057 33.7 8.1 90 4-95 197-300 (440)
163 KOG3864 Uncharacterized conser 68.0 1 2.2E-05 37.9 -1.3 33 313-345 150-184 (221)
164 TIGR02880 cbbX_cfxQ probable R 68.0 17 0.00037 32.7 6.5 67 3-69 123-208 (284)
165 PRK14952 DNA polymerase III su 67.7 1.4E+02 0.003 30.0 14.8 96 3-100 120-220 (584)
166 PRK14948 DNA polymerase III su 67.1 63 0.0014 32.7 10.8 93 3-97 123-219 (620)
167 PRK05563 DNA polymerase III su 65.9 55 0.0012 32.7 10.1 93 2-96 120-216 (559)
168 PHA02544 44 clamp loader, smal 65.0 95 0.0021 28.1 11.0 65 3-67 102-171 (316)
169 smart00367 LRR_CC Leucine-rich 64.9 5 0.00011 21.3 1.5 15 337-351 2-16 (26)
170 cd00561 CobA_CobO_BtuR ATP:cor 64.2 10 0.00022 30.9 3.8 37 4-40 98-139 (159)
171 PRK06871 DNA polymerase III su 62.9 72 0.0016 29.4 9.5 85 4-95 110-198 (325)
172 CHL00181 cbbX CbbX; Provisiona 62.6 61 0.0013 29.2 9.0 67 4-70 125-210 (287)
173 TIGR01128 holA DNA polymerase 62.6 79 0.0017 28.3 9.9 94 2-97 47-150 (302)
174 smart00368 LRR_RI Leucine rich 61.9 5.9 0.00013 21.6 1.4 14 314-327 2-15 (28)
175 PTZ00112 origin recognition co 61.1 83 0.0018 33.3 10.2 94 50-150 930-1030(1164)
176 PRK14965 DNA polymerase III su 60.7 38 0.00082 33.9 7.9 96 3-100 121-221 (576)
177 TIGR02881 spore_V_K stage V sp 60.3 40 0.00087 29.8 7.3 68 4-71 108-193 (261)
178 PRK07132 DNA polymerase III su 59.2 71 0.0015 29.0 8.7 89 3-99 92-184 (299)
179 PF07725 LRR_3: Leucine Rich R 58.9 8 0.00017 19.4 1.4 19 315-333 1-19 (20)
180 PRK08058 DNA polymerase III su 58.3 80 0.0017 29.0 9.2 65 4-68 113-181 (329)
181 PRK07993 DNA polymerase III su 57.9 80 0.0017 29.2 9.0 87 3-96 110-200 (334)
182 cd00009 AAA The AAA+ (ATPases 52.8 20 0.00043 27.5 3.8 39 2-40 85-131 (151)
183 PRK07452 DNA polymerase III su 49.6 1.3E+02 0.0028 27.4 9.1 95 2-98 62-170 (326)
184 PF13177 DNA_pol3_delta2: DNA 46.5 39 0.00084 27.4 4.6 54 4-57 105-162 (162)
185 KOG2120 SCF ubiquitin ligase, 46.5 9.7 0.00021 34.3 1.0 12 313-324 337-348 (419)
186 COG5238 RNA1 Ran GTPase-activa 44.6 19 0.00041 32.1 2.5 15 259-273 88-102 (388)
187 PF10443 RNA12: RNA12 protein; 43.8 3E+02 0.0065 26.4 10.4 101 3-107 150-285 (431)
188 KOG0741 AAA+-type ATPase [Post 43.4 55 0.0012 32.2 5.5 83 4-90 601-704 (744)
189 PRK14700 recombination factor 43.1 81 0.0018 28.5 6.3 68 27-94 5-81 (300)
190 TIGR01069 mutS2 MutS2 family p 37.7 39 0.00085 35.1 4.0 111 2-120 403-521 (771)
191 PRK08485 DNA polymerase III su 37.2 2E+02 0.0042 24.5 7.3 63 6-68 59-138 (206)
192 PRK00409 recombination and DNA 36.6 35 0.00077 35.5 3.5 109 2-120 408-526 (782)
193 PRK05629 hypothetical protein; 36.0 2.7E+02 0.0058 25.3 8.9 96 2-99 65-167 (318)
194 PRK08699 DNA polymerase III su 35.1 1.7E+02 0.0038 26.8 7.4 65 4-68 116-184 (325)
195 PRK03992 proteasome-activating 33.5 1.6E+02 0.0034 27.9 7.0 63 28-94 269-337 (389)
196 KOG4341 F-box protein containi 31.8 14 0.00031 34.8 -0.2 60 289-348 343-412 (483)
197 CHL00176 ftsH cell division pr 31.7 3.8E+02 0.0083 27.3 9.7 90 2-94 276-388 (638)
198 KOG3763 mRNA export factor TAP 29.9 29 0.00063 34.0 1.4 35 292-326 244-282 (585)
199 COG0497 RecN ATPase involved i 29.4 1.9E+02 0.0041 28.8 6.8 43 4-46 456-501 (557)
200 COG2812 DnaX DNA polymerase II 29.3 2.3E+02 0.0051 27.9 7.5 89 4-94 122-214 (515)
201 PF07328 VirD1: T-DNA border e 29.2 93 0.002 24.1 3.7 84 32-116 26-109 (147)
202 KOG1947 Leucine rich repeat pr 29.1 17 0.00038 34.8 -0.1 12 313-324 294-305 (482)
203 TIGR00708 cobA cob(I)alamin ad 28.8 75 0.0016 26.2 3.5 37 4-40 100-141 (173)
204 PF00004 AAA: ATPase family as 28.7 1.3E+02 0.0028 22.6 4.8 10 2-11 59-68 (132)
205 COG2109 BtuR ATP:corrinoid ade 28.5 61 0.0013 27.1 2.9 37 4-40 125-166 (198)
206 PRK08116 hypothetical protein; 28.4 34 0.00073 30.5 1.6 36 4-39 181-221 (268)
207 PTZ00454 26S protease regulato 26.9 4.2E+02 0.0091 25.2 8.7 90 2-94 239-351 (398)
208 COG3267 ExeA Type II secretory 26.5 1.8E+02 0.0038 25.8 5.5 52 51-102 195-247 (269)
209 TIGR00611 recf recF protein. A 26.3 60 0.0013 30.4 2.9 38 3-42 304-344 (365)
210 TIGR01241 FtsH_fam ATP-depende 26.0 4.1E+02 0.0089 26.0 8.8 64 28-94 192-260 (495)
211 PRK05986 cob(I)alamin adenolsy 25.9 96 0.0021 26.1 3.7 37 4-40 118-159 (191)
212 cd03241 ABC_RecN RecN ATPase i 25.3 2E+02 0.0043 25.6 6.0 41 4-44 195-238 (276)
213 PF03861 ANTAR: ANTAR domain; 25.3 1.4E+02 0.0029 19.2 3.6 31 53-86 25-55 (56)
214 PRK08181 transposase; Validate 24.5 40 0.00087 30.0 1.3 35 4-39 170-209 (269)
215 PRK10869 recombination and rep 24.3 3E+02 0.0066 27.5 7.5 41 4-44 455-498 (553)
216 PF10236 DAP3: Mitochondrial r 21.9 2.8E+02 0.006 25.3 6.3 47 50-96 258-305 (309)
217 KOG4341 F-box protein containi 21.7 41 0.00088 31.9 0.8 63 289-351 369-440 (483)
218 TIGR03689 pup_AAA proteasome A 21.1 2.7E+02 0.0058 27.5 6.3 68 2-69 290-378 (512)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-53 Score=422.73 Aligned_cols=338 Identities=24% Similarity=0.335 Sum_probs=240.6
Q ss_pred CEEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCchhHHHh-cCccceEEeCCCCHHHHHHHHHHhhhcC-CCCCcc
Q 017858 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRN-WGVRKIYEMKALEYHHAIRLFSRHAFKQ-NHPDVG 78 (365)
Q Consensus 1 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~-~~~~~~~~l~~L~~~e~~~L~~~~~~~~-~~~~~~ 78 (365)
|||+|||||||+..+|+.+..++|....||+|++|||++.|+.. +++...++++.|+++|||+||.+.+|.. ....+.
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence 79999999999999999999999988899999999999999999 7888899999999999999999999877 345566
Q ss_pred HHHHHHHHHHHcCCCchhHHHHhHhhccc-CHHHHHHHHHHHhhc-------CcccHHHHHHHHHhcCChhhhhhhhhhc
Q 017858 79 YEELSCKVMKYAQGVPLALKVLGCFLHKR-EKEVWESATDKLQRI-------LYPSILEVLKISYDSLDDKEKNIFLDVA 150 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~~~~~l~~~-------~~~~~~~~l~~sy~~L~~~~~~~~~~ls 150 (365)
++++|++|+++|+|+|||+.++|+.|+.+ +..+|+++.+.+... ..+.+.+++.+||+.||++.|.||+|||
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLyca 420 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCA 420 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhc
Confidence 89999999999999999999999999987 788999999987654 1357889999999999999999999999
Q ss_pred cccCCcCH--HHHHHHHHHcCCC------------cccchhHHhhcCceeEccC----CcEEecHHHHHHHHHHHhhcCC
Q 017858 151 CFFQGEDV--DLVMKFFNASGFY------------PEIGMSVLVDKSLIAIDSH----KKITMHDLLQELGREIVRQESI 212 (365)
Q Consensus 151 ~fp~~~~~--~~l~~~w~~~~~~------------~~~~l~~L~~~sLl~~~~~----~~~~~H~lv~~~a~~~~~~~~~ 212 (365)
+||+++.+ +.++..|+++|++ ++.++++|++++|+..... ..|+|||+||++|..++++...
T Consensus 421 lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~ 500 (889)
T KOG4658|consen 421 LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGK 500 (889)
T ss_pred cCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccc
Confidence 99999755 7999999999976 2456999999999998752 5899999999999999994332
Q ss_pred CCCC--------------------cccCCCchhHHHHHhhcCCCceEEEEeeccccccccccCccccCCCCCCceEEEec
Q 017858 213 DPAN--------------------RSRLWHHEDIYEVLTYNTGTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYR 272 (365)
Q Consensus 213 ~~~~--------------------~~~l~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 272 (365)
...+ .+++...............-++++++.+-.+......++...|..++.|++||+++
T Consensus 501 ~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~ 580 (889)
T KOG4658|consen 501 QEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG 580 (889)
T ss_pred cccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCC
Confidence 1100 01111111111111111111223333322221112223334455555555555544
Q ss_pred CccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCc-ccccccccccCccCceeccc
Q 017858 273 SSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSD-IERLWHCVKHYSKLNQIIHA 345 (365)
Q Consensus 273 ~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~ 345 (365)
|. .+..+|. +.|.+||||+++++.++.+|.++ +|..|.+|++..+. +..+|..+..|++|++|.+.
T Consensus 581 ~~-------~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 581 NS-------SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred CC-------ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 33 3334555 55555555555555555555555 25555555555552 23333333335555555543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.8e-49 Score=416.31 Aligned_cols=361 Identities=37% Similarity=0.639 Sum_probs=309.0
Q ss_pred CEEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCchhHHHhcCccceEEeCCCCHHHHHHHHHHhhhcCCCCCccHH
Q 017858 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYE 80 (365)
Q Consensus 1 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~~ 80 (365)
||+||||||||+.++|+.+.......++||+||||||++.++..+++.+.|+++.++.+|||+||+++||+...+++++.
T Consensus 296 krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~ 375 (1153)
T PLN03210 296 RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFM 375 (1153)
T ss_pred CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHH
Confidence 68999999999999999998766666889999999999999988777889999999999999999999998776777789
Q ss_pred HHHHHHHHHcCCCchhHHHHhHhhcccCHHHHHHHHHHHhhcCcccHHHHHHHHHhcCCh-hhhhhhhhhccccCCcCHH
Q 017858 81 ELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATDKLQRILYPSILEVLKISYDSLDD-KEKNIFLDVACFFQGEDVD 159 (365)
Q Consensus 81 ~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~~l~~sy~~L~~-~~~~~~~~ls~fp~~~~~~ 159 (365)
+++++|+++|+|+||||+++|++|++++..+|..++++++......+..++++||+.|++ ..|.||+++|+|+.+.+++
T Consensus 376 ~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~ 455 (1153)
T PLN03210 376 ELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN 455 (1153)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH
Confidence 999999999999999999999999999999999999999988888999999999999976 5899999999999999888
Q ss_pred HHHHHHHHcCCCcccchhHHhhcCceeEccCCcEEecHHHHHHHHHHHhhcCCCCCCcccCCCchhHHHHHhhcCCCceE
Q 017858 160 LVMKFFNASGFYPEIGMSVLVDKSLIAIDSHKKITMHDLLQELGREIVRQESIDPANRSRLWHHEDIYEVLTYNTGTEKI 239 (365)
Q Consensus 160 ~l~~~w~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~H~lv~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 239 (365)
.+..++...++.++.+++.|++++|++.. .+++.|||++|++|++++.++...++++.++|.+.++..++....++..+
T Consensus 456 ~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v 534 (1153)
T PLN03210 456 DIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKV 534 (1153)
T ss_pred HHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCccccee
Confidence 87777777777778889999999999887 67899999999999999998887888999999999999999999999999
Q ss_pred EEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CCC-CcccEEEEeCCCCCCCCCCCCCCCc
Q 017858 240 EGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGF-AEVKYLHWYGYPLKSLPSNLSAKKL 316 (365)
Q Consensus 240 ~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l-~~L~~L~l~~~~i~~lp~~~~l~~L 316 (365)
+.+.++.+......+....|.+|++|+.|.++.+.+.+...... .+|. ..+ .+|++|++.+++++.+|..+.+.+|
T Consensus 535 ~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~-~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L 613 (1153)
T PLN03210 535 LGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRW-HLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENL 613 (1153)
T ss_pred eEEEeccCccceeeecHHHHhcCccccEEEEeccccccccccee-ecCcchhhcCcccEEEEecCCCCCCCCCcCCccCC
Confidence 99999999988888889999999999999995443322111111 3444 333 4688888888888888877777778
Q ss_pred eEEeccCCcccccccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 317 VLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 317 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
+.|++++|.+..+|.++..+++|+.|++++|..++ .+|+++.+++|+
T Consensus 614 ~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~ls~l~~Le 660 (1153)
T PLN03210 614 VKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPDLSMATNLE 660 (1153)
T ss_pred cEEECcCccccccccccccCCCCCEEECCCCCCcC-cCCccccCCccc
Confidence 88888887777777777777777777777766666 677666665554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=1.7e-30 Score=235.20 Aligned_cols=173 Identities=29% Similarity=0.516 Sum_probs=136.8
Q ss_pred CEEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCchhHHHhcCc-cceEEeCCCCHHHHHHHHHHhhhcCC-CCCcc
Q 017858 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWGV-RKIYEMKALEYHHAIRLFSRHAFKQN-HPDVG 78 (365)
Q Consensus 1 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~-~~~~~l~~L~~~e~~~L~~~~~~~~~-~~~~~ 78 (365)
|||||||||||+...|+.+...++....|++||||||+..++..++. ...+++++|+.+||++||.+.++... ...+.
T Consensus 101 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~ 180 (287)
T PF00931_consen 101 KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPED 180 (287)
T ss_dssp TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TT
T ss_pred ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999998888777789999999999998877654 57899999999999999999997665 33445
Q ss_pred HHHHHHHHHHHcCCCchhHHHHhHhhccc-CHHHHHHHHHHHhhcC------cccHHHHHHHHHhcCChhhhhhhhhhcc
Q 017858 79 YEELSCKVMKYAQGVPLALKVLGCFLHKR-EKEVWESATDKLQRIL------YPSILEVLKISYDSLDDKEKNIFLDVAC 151 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~~~~~l~~~~------~~~~~~~l~~sy~~L~~~~~~~~~~ls~ 151 (365)
..+.+++|+++|+|+||||.++|++++.+ +..+|.++++++.... ..++..++.+||+.||++.|+||.+||+
T Consensus 181 ~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~ 260 (287)
T PF00931_consen 181 LEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSI 260 (287)
T ss_dssp SCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcC
Confidence 56789999999999999999999999664 7789999998876543 3679999999999999999999999999
Q ss_pred ccCCcC--HHHHHHHHHHcCCCcc
Q 017858 152 FFQGED--VDLVMKFFNASGFYPE 173 (365)
Q Consensus 152 fp~~~~--~~~l~~~w~~~~~~~~ 173 (365)
||+++. .+.++++|.++|++..
T Consensus 261 f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 261 FPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred CCCCceECHHHHHHHHHHCCCCcc
Confidence 999865 6899999999988753
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=7.8e-13 Score=105.39 Aligned_cols=123 Identities=18% Similarity=0.273 Sum_probs=101.4
Q ss_pred HHHhhcCCCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCC
Q 017858 228 EVLTYNTGTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLK 305 (365)
Q Consensus 228 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~ 305 (365)
.+.......++++.+.+.++.. .+.|.-|+.++.|.+||++.|++.. ..+|. ..+..||-|++++|.++
T Consensus 70 ~lp~~issl~klr~lnvgmnrl---~~lprgfgs~p~levldltynnl~e------~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 70 ELPTSISSLPKLRILNVGMNRL---NILPRGFGSFPALEVLDLTYNNLNE------NSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred hcChhhhhchhhhheecchhhh---hcCccccCCCchhhhhhcccccccc------ccCCcchhHHHHHHHHHhcCCCcc
Confidence 3344445567777777776654 4558889999999999997776432 15776 56688999999999999
Q ss_pred CCCCCCC-CCCceEEeccCCcccccccccccCccCceecccccccccccCCC-CCCCC
Q 017858 306 SLPSNLS-AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMP 361 (365)
Q Consensus 306 ~lp~~~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~ 361 (365)
-+|+.++ +++||.|.++.|.+-++|.+++.|+.|+.|++.+|+ ++ .+|. ++.+.
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~-vlppel~~l~ 196 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LT-VLPPELANLD 196 (264)
T ss_pred cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-ee-ecChhhhhhh
Confidence 9999996 999999999999999999999999999999999999 88 7887 77653
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.98 E-value=2.3e-11 Score=97.12 Aligned_cols=85 Identities=14% Similarity=0.235 Sum_probs=46.2
Q ss_pred ccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcc--cccc
Q 017858 256 PSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDI--ERLW 330 (365)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l--~~lp 330 (365)
++.+..+.+|++|.+ .|+ .|+.+|. .+++.||.|++.-|++..+|..++ ++-|++|||.+|++ ..+|
T Consensus 49 ppnia~l~nlevln~-~nn-------qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNL-SNN-------QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred CCcHHHhhhhhhhhc-ccc-------hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCC
Confidence 445556666666666 344 4555655 556666666666666666666663 66666666665544 2234
Q ss_pred cccccCccCceecccccc
Q 017858 331 HCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 331 ~~i~~l~~L~~L~l~~~~ 348 (365)
-.+..|+.|+-|.++.|.
T Consensus 121 gnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDND 138 (264)
T ss_pred cchhHHHHHHHHHhcCCC
Confidence 444444444444444443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.95 E-value=1e-10 Score=110.45 Aligned_cols=107 Identities=11% Similarity=0.221 Sum_probs=88.5
Q ss_pred cCCCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCC
Q 017858 233 NTGTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSN 310 (365)
Q Consensus 233 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~ 310 (365)
....+.++.+.+..++.....+|++.| ++..|.+||||+|. ++..|. ..-+++-+|+|++|+|.++|.+
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNq--------L~EvP~~LE~AKn~iVLNLS~N~IetIPn~ 144 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQ--------LREVPTNLEYAKNSIVLNLSYNNIETIPNS 144 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhh--------hhhcchhhhhhcCcEEEEcccCccccCCch
Confidence 345566777777777776677766554 88999999997664 667887 6668888999999999999988
Q ss_pred C--CCCCceEEeccCCcccccccccccCccCceecccccc
Q 017858 311 L--SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 311 ~--~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
+ +|.-|-+||||+|++..+|+.+..|.+|+.|++++|.
T Consensus 145 lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred HHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 7 5999999999999999999999999999999999985
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=3.5e-08 Score=103.39 Aligned_cols=200 Identities=15% Similarity=0.170 Sum_probs=127.3
Q ss_pred EEEEEEeCCCChH--hHH-HHHccCCCCCCCcEEEEEeCchhHH---HhcCccceEEeC----CCCHHHHHHHHHHhhhc
Q 017858 2 KVLIVFDDVTCFS--QIE-SLIGSLDWLTPVSRIIITTRNKQVL---RNWGVRKIYEMK----ALEYHHAIRLFSRHAFK 71 (365)
Q Consensus 2 r~LlVlDdv~~~~--~~~-~l~~~~~~~~~gs~ilvTTR~~~v~---~~~~~~~~~~l~----~L~~~e~~~L~~~~~~~ 71 (365)
+++||+||+...+ ... .+...+....++.++|||||...-. .........++. +|+.+|+.++|....+.
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~ 201 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS 201 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC
Confidence 6899999997543 122 2222222234567898999985211 111112345566 99999999999876532
Q ss_pred CCCCCccHHHHHHHHHHHcCCCchhHHHHhHhhcccCHHHHHHHHHHHhhcCcccHHHHHHH-HHhcCChhhhhhhhhhc
Q 017858 72 QNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATDKLQRILYPSILEVLKI-SYDSLDDKEKNIFLDVA 150 (365)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~~l~~-sy~~L~~~~~~~~~~ls 150 (365)
. -..+.+.+|.+.|+|.|+++..++..++..+.. .......+.......+...+.- .++.||++.+..+...|
T Consensus 202 ~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a 275 (903)
T PRK04841 202 P-----IEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCS 275 (903)
T ss_pred C-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 1 123567889999999999999988877543210 0111222222122345554433 47899999999999999
Q ss_pred cccCCcCHHHHHHHHHHcCCCcccchhHHhhcCceeE-cc--CCcEEecHHHHHHHHHHHhhc
Q 017858 151 CFFQGEDVDLVMKFFNASGFYPEIGMSVLVDKSLIAI-DS--HKKITMHDLLQELGREIVRQE 210 (365)
Q Consensus 151 ~fp~~~~~~~l~~~w~~~~~~~~~~l~~L~~~sLl~~-~~--~~~~~~H~lv~~~a~~~~~~~ 210 (365)
+++ .++.+.+..+.. ...+...+++|.+.+++.. .+ ..+|+.|++++++.+.....+
T Consensus 276 ~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 276 VLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred ccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 987 666554443332 1123566899999999654 22 347999999999999876433
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.79 E-value=6.7e-09 Score=109.54 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=52.0
Q ss_pred CCCCcccEEEEeCCCCC-CCCCCC-CCCCceEEeccCCcc-cccccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 289 PGFAEVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDSDI-ERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~-~lp~~~-~l~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
..+++|++|++++|.+. .+|..+ ++++|++|++++|.+ ..+|..++++++|++|++++|.... .+|. ++++++|+
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~ 239 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSLN 239 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-cCChhHhcCCCCC
Confidence 66677777777777754 566666 377777777777765 3467777777777777777777444 6776 77777665
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.75 E-value=1.3e-08 Score=107.40 Aligned_cols=120 Identities=17% Similarity=0.297 Sum_probs=80.5
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCCCCCCcccEEEEeCCCCC-CCCCCC-CC
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGYPLK-SLPSNL-SA 313 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~~i~-~lp~~~-~l 313 (365)
.+.++.+.+..+... ..++...+..+.+|++|++++|.+.| .+|...+++|++|++++|.+. .+|..+ ++
T Consensus 92 l~~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~~-------~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 92 LPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFTG-------SIPRGSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred CCCCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCcccc-------ccCccccCCCCEEECcCCcccccCChHHhcC
Confidence 344455544443321 12344445566677777775444222 233356777888888888865 577777 48
Q ss_pred CCceEEeccCCcc-cccccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 314 KKLVLVEVPDSDI-ERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 314 ~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
++|++|++++|.+ ..+|..++++++|++|++++|.... .+|. ++++++|+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~ 215 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLK 215 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCcc
Confidence 8899999988876 4678888888999999998888555 7787 88887775
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=1.2e-08 Score=84.10 Aligned_cols=105 Identities=19% Similarity=0.280 Sum_probs=40.7
Q ss_pred ceEEEEeeccccccccccCccccC-CCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC--C
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFT-KMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL--S 312 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~--~ 312 (365)
...+.+.++.+.+..+ +.+. .+.+|++|+++ ++ .|+.++. ..++.|+.|++++|.|+++++.+ +
T Consensus 19 ~~~~~L~L~~n~I~~I----e~L~~~l~~L~~L~Ls-~N-------~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI----ENLGATLDKLEVLDLS-NN-------QITKLEGLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp ---------------------S--TT-TT--EEE-T-TS---------S--TT----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccc----cchhhhhcCCCEEECC-CC-------CCccccCccChhhhhhcccCCCCCCccccchHHh
Confidence 3456677777666433 2233 56789999995 44 5667777 78899999999999999987655 3
Q ss_pred CCCceEEeccCCcccccc--cccccCccCceecccccccccccCC
Q 017858 313 AKKLVLVEVPDSDIERLW--HCVKHYSKLNQIIHAACNMLTAKIP 355 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~lp 355 (365)
+++|+.|.+++|++..+- ..+..+++|++|++.+|. +. ..+
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~-~~~ 129 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VC-EKK 129 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GG-GST
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-cc-chh
Confidence 889999999999886663 345678899999999987 44 444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.65 E-value=3.1e-09 Score=95.66 Aligned_cols=88 Identities=15% Similarity=0.302 Sum_probs=58.6
Q ss_pred ccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCCC------------------
Q 017858 253 RLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNLS------------------ 312 (365)
Q Consensus 253 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~~------------------ 312 (365)
.+.+..++.+++|..|++ .|+ .+..+|. +.+..|+.|+++.|++..+|..+.
T Consensus 425 sfv~~~l~~l~kLt~L~L-~NN-------~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDL-SNN-------LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred ccchHHHHhhhcceeeec-ccc-------hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccccc
Confidence 345667788899999999 565 4557888 778889999999888776665442
Q ss_pred -------CCCceEEeccCCcccccccccccCccCceecccccc
Q 017858 313 -------AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 313 -------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
+.+|.+|||.+|.+..+|+.+++|++|++|++++|.
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 445555555555555555555555555555555554
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=2.9e-08 Score=67.25 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=49.6
Q ss_pred CcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCccccccc-ccccCccCceecccccc
Q 017858 292 AEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWH-CVKHYSKLNQIIHAACN 348 (365)
Q Consensus 292 ~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 348 (365)
++|++|++++|++..+|... ++++|++|++++|.+..+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46889999999999998765 49999999999999998854 66999999999999986
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=2.5e-08 Score=82.28 Aligned_cols=96 Identities=15% Similarity=0.316 Sum_probs=35.7
Q ss_pred cCCCCCCceEEEecCccCCCccccccccCC-C-CCCcccEEEEeCCCCCCCCCCCCCCCceEEeccCCccccccccc-cc
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYLQD-P-GFAEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCV-KH 335 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~-~l~~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~lp~~i-~~ 335 (365)
+.+...++.|+| .++ .|+.+.. + .+.+|+.|++++|.|+.++..-.+++|++|++++|.+..++.++ ..
T Consensus 15 ~~n~~~~~~L~L-~~n-------~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNL-RGN-------QISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccc-ccc-------ccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHh
Confidence 345556899999 555 5666766 4 68899999999999999975436999999999999999997666 47
Q ss_pred CccCceecccccccccccCCC---CCCCCCCC
Q 017858 336 YSKLNQIIHAACNMLTAKIPN---PTLMPRMK 364 (365)
Q Consensus 336 l~~L~~L~l~~~~~l~~~lp~---~~~l~~L~ 364 (365)
+++|++|++++|+ +. .+-+ ++.+++|+
T Consensus 87 lp~L~~L~L~~N~-I~-~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 87 LPNLQELYLSNNK-IS-DLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS-----SCCCCGGGGG-TT--
T ss_pred CCcCCEEECcCCc-CC-ChHHhHHHHcCCCcc
Confidence 9999999999997 55 5543 55555553
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.62 E-value=2.1e-09 Score=101.75 Aligned_cols=101 Identities=13% Similarity=0.234 Sum_probs=77.0
Q ss_pred ccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcccccccc
Q 017858 256 PSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDIERLWHC 332 (365)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l~~lp~~ 332 (365)
|.++..+.+|+.+|+|+|+ ++.+|. -.+.+|+.|+|++|.|+.+.-.++ ..+|++|++|.|.+..+|+.
T Consensus 215 Ptsld~l~NL~dvDlS~N~--------Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENN--------LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred CCchhhhhhhhhccccccC--------CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH
Confidence 5667788888888886665 446777 777888888888888888876665 78888888888888888888
Q ss_pred cccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 333 VKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 333 i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
+.+|++|+.|.+.+|+.--.-+|+ +|+|.+|+
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 888888888888777622114777 88777664
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.62 E-value=1.7e-08 Score=103.09 Aligned_cols=97 Identities=23% Similarity=0.285 Sum_probs=79.5
Q ss_pred CCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCC-CCCCCCCCC-CCCceEEeccCCcccccccccccC
Q 017858 262 MPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYP-LKSLPSNLS-AKKLVLVEVPDSDIERLWHCVKHY 336 (365)
Q Consensus 262 l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~-i~~lp~~~~-l~~L~~L~l~~~~l~~lp~~i~~l 336 (365)
.+.|++|-+..|.. .+..++. ..++.|++|++++|. +..+|.+|+ |-||++|+++++.+..+|.++++|
T Consensus 544 ~~~L~tLll~~n~~------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L 617 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNL 617 (889)
T ss_pred CCccceEEEeecch------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHH
Confidence 34688888854430 1334444 668999999999887 889999996 999999999999999999999999
Q ss_pred ccCceecccccccccccCCC-CCCCCCCCC
Q 017858 337 SKLNQIIHAACNMLTAKIPN-PTLMPRMKN 365 (365)
Q Consensus 337 ~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~ 365 (365)
.+|.+|++..+..+. .+|. ...|++|++
T Consensus 618 k~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLE-SIPGILLELQSLRV 646 (889)
T ss_pred Hhhheeccccccccc-cccchhhhcccccE
Confidence 999999999998777 7777 555888863
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.59 E-value=3.4e-09 Score=95.43 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=31.3
Q ss_pred ccccCC-CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccccccccccCccCceecccccc
Q 017858 283 ISYLQD-PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 283 l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
|..+|. +.+..|+.|++..|.|+.+|..+ ++.+|.+||++.|+++++|+++..|.+|.+||+|+|.
T Consensus 218 i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 218 IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc
Confidence 334444 44444444444444444444444 1444555555555555555555545555555555444
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.49 E-value=2.6e-07 Score=98.62 Aligned_cols=99 Identities=17% Similarity=0.342 Sum_probs=75.1
Q ss_pred ccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCC-CCCCCCCCCCCCceEEeccCCccccccccc
Q 017858 256 PSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYP-LKSLPSNLSAKKLVLVEVPDSDIERLWHCV 333 (365)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~-i~~lp~~~~l~~L~~L~l~~~~l~~lp~~i 333 (365)
|..+.++++|+.|+++++. .++.+|. ..+++|++|++++|. +..+|.. ..+|+.|+|++|.+..+|.++
T Consensus 795 P~si~~L~~L~~L~Ls~C~-------~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP~si 865 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCI-------NLETLPTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVPWWI 865 (1153)
T ss_pred ChhhhCCCCCCEEECCCCC-------CcCeeCCCCCccccCEEECCCCCcccccccc--ccccCEeECCCCCCccChHHH
Confidence 5567788888888885444 4656777 667888888888865 5555532 457888888888888888888
Q ss_pred ccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 334 KHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 334 ~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
..+++|+.|++++|..++ .+|. ++.+++|+
T Consensus 866 ~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~ 896 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLE 896 (1153)
T ss_pred hcCCCCCEEECCCCCCcC-ccCcccccccCCC
Confidence 889999999998888888 7876 66666653
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.40 E-value=1.5e-07 Score=88.81 Aligned_cols=120 Identities=18% Similarity=0.269 Sum_probs=89.7
Q ss_pred cCCCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCC
Q 017858 233 NTGTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPS 309 (365)
Q Consensus 233 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~ 309 (365)
.....+++.+.+..+.+. .+....+..++.|++||||.|. |.++|. ..=.++++|+|++|.|+.+-.
T Consensus 121 ~~~sghl~~L~L~~N~I~--sv~se~L~~l~alrslDLSrN~--------is~i~~~sfp~~~ni~~L~La~N~It~l~~ 190 (873)
T KOG4194|consen 121 GHESGHLEKLDLRHNLIS--SVTSEELSALPALRSLDLSRNL--------ISEIPKPSFPAKVNIKKLNLASNRITTLET 190 (873)
T ss_pred cccccceeEEeeeccccc--cccHHHHHhHhhhhhhhhhhch--------hhcccCCCCCCCCCceEEeecccccccccc
Confidence 334556777777766664 4556778888999999997665 556666 333679999999999998865
Q ss_pred CC--CCCCceEEeccCCcccccccc-cccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 310 NL--SAKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 310 ~~--~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
.- ++.+|.+|.|+.|+++.+|.. +++|++|+.|+|..|. +. ..-. |..|++||
T Consensus 191 ~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-ir-ive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 191 GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IR-IVEGLTFQGLPSLQ 248 (873)
T ss_pred ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-ee-eehhhhhcCchhhh
Confidence 44 488999999999999999765 4669999999999987 55 4432 66666654
No 19
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=3.1e-07 Score=57.34 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCceEEeccCCcccccccccccCccCceecccccccccccCCCC
Q 017858 314 KKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNP 357 (365)
Q Consensus 314 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~ 357 (365)
++|++|++++|++..+|..+++|++|++|++++|. ++ .+|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~-~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-IS-DISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CS-BEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CC-CCcCC
Confidence 36777777777777777667777777777777776 55 55543
No 20
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=4.7e-07 Score=90.36 Aligned_cols=88 Identities=14% Similarity=0.223 Sum_probs=38.9
Q ss_pred ccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCC-CCCCCC-CCCCceEEeccCCcc-cccc
Q 017858 256 PSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDSDI-ERLW 330 (365)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~-~lp~~~-~l~~L~~L~l~~~~l-~~lp 330 (365)
+..+..+++|+.|+|+.|.+.| .+|. ..+++|++|++++|.+. .+|..+ ++.+|++|+|++|.+ ..+|
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g-------~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRG-------NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccC-------cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence 3344445555555553333222 3333 44445555555555543 344444 245555555555544 2344
Q ss_pred cccccC-ccCceecccccccc
Q 017858 331 HCVKHY-SKLNQIIHAACNML 350 (365)
Q Consensus 331 ~~i~~l-~~L~~L~l~~~~~l 350 (365)
..++.+ .++..+++++|..+
T Consensus 508 ~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 508 AALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred hHHhhccccCceEEecCCccc
Confidence 444332 23444444444433
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.34 E-value=5.5e-08 Score=91.66 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=65.9
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC-
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL- 311 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~- 311 (365)
..+++++.+..+.. ..+....+.++..|++|++|.|. |+.+.. ...++|+.|+|++|.|..+|+.-
T Consensus 268 l~kme~l~L~~N~l--~~vn~g~lfgLt~L~~L~lS~Na--------I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 268 LEKMEHLNLETNRL--QAVNEGWLFGLTSLEQLDLSYNA--------IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred ecccceeecccchh--hhhhcccccccchhhhhccchhh--------hheeecchhhhcccceeEeccccccccCChhHH
Confidence 44455554444433 23344555566666666664333 333322 44466677777777777666544
Q ss_pred -CCCCceEEeccCCcccccccc-cccCccCceecccccccccccCCC----CCCCCCCC
Q 017858 312 -SAKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACNMLTAKIPN----PTLMPRMK 364 (365)
Q Consensus 312 -~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp~----~~~l~~L~ 364 (365)
+|..|+.|+|++|.+..+.++ +..+.+|+.|||++|...- .+.+ |..|++|+
T Consensus 338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLR 395 (873)
T ss_pred HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhh
Confidence 366777777777776666544 3556777777777776222 3432 55555543
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=7.2e-07 Score=60.34 Aligned_cols=56 Identities=16% Similarity=0.376 Sum_probs=45.8
Q ss_pred CCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcc
Q 017858 263 PKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDI 326 (365)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l 326 (365)
++|++|+++ ++ +++.+|. ..+++|++|++++|.+..+|+.. ++++|++|++++|++
T Consensus 1 p~L~~L~l~-~n-------~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLS-NN-------KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEET-SS-------TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECC-CC-------CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468899994 55 5767876 77899999999999999888755 499999999999875
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=1.2e-07 Score=82.66 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=49.0
Q ss_pred cCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCCCCCCceEEeccCCccccc--ccccc
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERL--WHCVK 334 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~l--p~~i~ 334 (365)
+..+++|+.||||+|. ++.+.. ..|-+++.|.+++|.++++..--.|.+|.+||+++|+|..+ -.+|+
T Consensus 325 La~L~~L~~LDLS~N~--------Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG 396 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNL--------LAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIG 396 (490)
T ss_pred hhhcccceEeecccch--------hHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccc
Confidence 4555666666664332 333333 44555666666666665554222366666777777666655 33566
Q ss_pred cCccCceecccccccccccCC
Q 017858 335 HYSKLNQIIHAACNMLTAKIP 355 (365)
Q Consensus 335 ~l~~L~~L~l~~~~~l~~~lp 355 (365)
+|++|+++.+.+|. +. .+|
T Consensus 397 ~LPCLE~l~L~~NP-l~-~~v 415 (490)
T KOG1259|consen 397 NLPCLETLRLTGNP-LA-GSV 415 (490)
T ss_pred cccHHHHHhhcCCC-cc-ccc
Confidence 67777766666665 44 344
No 24
>PLN03150 hypothetical protein; Provisional
Probab=98.21 E-value=2.7e-06 Score=84.93 Aligned_cols=88 Identities=9% Similarity=0.246 Sum_probs=73.8
Q ss_pred CCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCC-CCCCCCC-CCCceEEeccCCccc-ccccccccCcc
Q 017858 264 KLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLK-SLPSNLS-AKKLVLVEVPDSDIE-RLWHCVKHYSK 338 (365)
Q Consensus 264 ~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~-~lp~~~~-l~~L~~L~l~~~~l~-~lp~~i~~l~~ 338 (365)
.++.|+|+++.+.| .+|. ..+++|++|+|++|.+. .+|..++ +.+|++|+|++|.+. .+|..+++|++
T Consensus 419 ~v~~L~L~~n~L~g-------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQGLRG-------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECCCCCccc-------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 47788996555443 4666 88999999999999986 7888884 999999999999885 68999999999
Q ss_pred CceecccccccccccCCC-CCC
Q 017858 339 LNQIIHAACNMLTAKIPN-PTL 359 (365)
Q Consensus 339 L~~L~l~~~~~l~~~lp~-~~~ 359 (365)
|++|++++|.... .+|. ++.
T Consensus 492 L~~L~Ls~N~l~g-~iP~~l~~ 512 (623)
T PLN03150 492 LRILNLNGNSLSG-RVPAALGG 512 (623)
T ss_pred CCEEECcCCcccc-cCChHHhh
Confidence 9999999998544 8997 654
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.15 E-value=5.8e-07 Score=78.42 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=85.8
Q ss_pred EEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC-CCCCc
Q 017858 239 IEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL-SAKKL 316 (365)
Q Consensus 239 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~-~l~~L 316 (365)
++.+.+..+.+..+ ..+..-.+.+++|++|+|. |..+.+ ..|.+|..|++++|.+.++..+- .|-|.
T Consensus 286 LtelDLS~N~I~~i---DESvKL~Pkir~L~lS~N~--------i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 286 LTELDLSGNLITQI---DESVKLAPKLRRLILSQNR--------IRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred hhhccccccchhhh---hhhhhhccceeEEeccccc--------eeeehhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 34444444433222 4555667899999997664 556666 88899999999999988886544 48999
Q ss_pred eEEeccCCcccccccccccCccCceecccccccccccCC---CCCCCCCCC
Q 017858 317 VLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIP---NPTLMPRMK 364 (365)
Q Consensus 317 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp---~~~~l~~L~ 364 (365)
++|.|++|.++.+ .++++|.+|.+||+++|+ +. .+. .+|+|+.|+
T Consensus 355 KtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie-~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 355 KTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IE-ELDEVNHIGNLPCLE 402 (490)
T ss_pred eeeehhhhhHhhh-hhhHhhhhheeccccccc-hh-hHHHhcccccccHHH
Confidence 9999999999988 589999999999999997 55 555 288888765
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.12 E-value=3.1e-07 Score=90.91 Aligned_cols=81 Identities=14% Similarity=0.248 Sum_probs=42.9
Q ss_pred cCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCcccccccccc
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVK 334 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~lp~~i~ 334 (365)
+.++++||+|+|+.| +++.+|. .+|..|+.|+++||+++.+|..+ .+..|++|...+|.+..+| ++.
T Consensus 379 l~~~~hLKVLhLsyN--------rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~ 449 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYN--------RLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELA 449 (1081)
T ss_pred hccccceeeeeeccc--------ccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhh
Confidence 456666666666433 3445555 55555566666666665555444 3445555555555554454 444
Q ss_pred cCccCceecccccc
Q 017858 335 HYSKLNQIIHAACN 348 (365)
Q Consensus 335 ~l~~L~~L~l~~~~ 348 (365)
.++.|+.+|+|.|.
T Consensus 450 ~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNN 463 (1081)
T ss_pred hcCcceEEecccch
Confidence 44444445444443
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.09 E-value=2.6e-07 Score=91.51 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=61.9
Q ss_pred CCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCcccccccccccC
Q 017858 260 TKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKHY 336 (365)
Q Consensus 260 ~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~lp~~i~~l 336 (365)
.+.-.|++|+++ |+ .+..+|. ..+.+|+.|+++.|.|.++|.++ ++.+|++|+|..|.+..+|.++..+
T Consensus 42 ~~~v~L~~l~ls-nn-------~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 42 EKRVKLKSLDLS-NN-------QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISEL 113 (1081)
T ss_pred hheeeeEEeecc-cc-------ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhh
Confidence 333347788884 44 3445666 66677778888888787887666 3778888888887777788888888
Q ss_pred ccCceecccccccccccCCC
Q 017858 337 SKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 337 ~~L~~L~l~~~~~l~~~lp~ 356 (365)
++|++|++|+|. .. .+|.
T Consensus 114 knl~~LdlS~N~-f~-~~Pl 131 (1081)
T KOG0618|consen 114 KNLQYLDLSFNH-FG-PIPL 131 (1081)
T ss_pred hcccccccchhc-cC-CCch
Confidence 888888888776 45 5664
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.02 E-value=9.3e-06 Score=81.88 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=16.4
Q ss_pred ceEEeccCCcccccccccccCccCceecccccc
Q 017858 316 LVLVEVPDSDIERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 316 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
|+.|++++|.+..+|.+++.+++|+.|++++|.
T Consensus 424 L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 424 LLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 344444444444455455555555555555554
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.02 E-value=1.4e-07 Score=88.63 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=27.5
Q ss_pred ccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcccccccccccCccCceecccccc
Q 017858 294 VKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 294 L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
|+.|-+++|+++.+|..++ +.+|..||.+.|.+..+|..++.|.+|+.|++..|.
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh
Confidence 4455555555555555443 444555555555555555555555555555554444
No 30
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=4e-06 Score=52.31 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=31.7
Q ss_pred CcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCcccccc
Q 017858 292 AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLW 330 (365)
Q Consensus 292 ~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~lp 330 (365)
++|++|++++|+|+.+|+.+ ++++|++|++++|.+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 46889999999999998867 5999999999999888775
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.95 E-value=1.5e-05 Score=80.59 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=27.7
Q ss_pred cccEEEEeCCCCCCCCCCCCCCCceEEeccCCcccccccccccCccCceecccccccccccCC
Q 017858 293 EVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIP 355 (365)
Q Consensus 293 ~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp 355 (365)
+|++|++++|++..+|..+. .+|++|++++|++..+|..+. .+|++|++++|. +. .+|
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~-~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt-~LP 320 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP-EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LT-ALP 320 (754)
T ss_pred CCCEEECcCCccCccccccC-CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cc-cCC
Confidence 44555555555554444331 345555555555555544332 245555555554 44 444
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.91 E-value=8.1e-06 Score=82.32 Aligned_cols=74 Identities=22% Similarity=0.148 Sum_probs=57.3
Q ss_pred ccccCCCCCCcccEEEEeCCCCCCCCCCCCCCCceEEeccCCcccccccccccCccCceecccccccccccCCC-CCCCC
Q 017858 283 ISYLQDPGFAEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMP 361 (365)
Q Consensus 283 l~~lp~~~l~~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~ 361 (365)
++.+|. ...+|+.|++++|.+..+|.. ..+|+.|++++|.+..+|... .+|+.|++++|. ++ .+|. +++++
T Consensus 374 L~~LP~-l~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~Nq-Lt-~LP~sl~~L~ 445 (788)
T PRK15387 374 LTSLPA-LPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQ-LT-RLPESLIHLS 445 (788)
T ss_pred cccCcc-cccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcch---hhhhhhhhccCc-cc-ccChHHhhcc
Confidence 434443 124688899999998888854 467999999999999998643 478889999998 78 8998 88887
Q ss_pred CCC
Q 017858 362 RMK 364 (365)
Q Consensus 362 ~L~ 364 (365)
+|+
T Consensus 446 ~L~ 448 (788)
T PRK15387 446 SET 448 (788)
T ss_pred CCC
Confidence 765
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.85 E-value=1.1e-06 Score=79.33 Aligned_cols=115 Identities=20% Similarity=0.327 Sum_probs=82.7
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeC-CCCCCCCCCC--
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYG-YPLKSLPSNL-- 311 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~-~~i~~lp~~~-- 311 (365)
....|.++.+.+ ..+++.+|..+++||.||||+|+ |+.+.+ ..+.+|..|-+.+ |+|+.+|...
T Consensus 68 ~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~--------Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 68 ETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNN--------ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cceEEEeccCCc--ccCChhhccchhhhceecccccc--------hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 445666777766 55789999999999999997665 545544 6666666665555 7788888877
Q ss_pred CCCCceEEeccCCcccccc-cccccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 312 SAKKLVLVEVPDSDIERLW-HCVKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
+|..|+-|.+.-|.+..++ +.+..|++|..|.+-.|. .. .++. |..+.+++
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q-~i~~~tf~~l~~i~ 191 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQ-SICKGTFQGLAAIK 191 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hh-hhccccccchhccc
Confidence 3888888888888887664 456788888888877776 55 5664 55555543
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.82 E-value=3.6e-05 Score=77.88 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=65.8
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCCCCCCcccEEEEeCCCCCCCCCCCCCCCce
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGYPLKSLPSNLSAKKLV 317 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~~i~~lp~~~~l~~L~ 317 (365)
.++.+.+..+++. .++...+ .+|+.|++++ + .++.+|.....+|+.|++++|.+..+|..+ ..+|+
T Consensus 200 ~L~~L~Ls~N~Lt--sLP~~l~---~nL~~L~Ls~-N-------~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l-~s~L~ 265 (754)
T PRK15370 200 QITTLILDNNELK--SLPENLQ---GNIKTLYANS-N-------QLTSIPATLPDTIQEMELSINRITELPERL-PSALQ 265 (754)
T ss_pred CCcEEEecCCCCC--cCChhhc---cCCCEEECCC-C-------ccccCChhhhccccEEECcCCccCcCChhH-hCCCC
Confidence 3455555554443 2333222 4677777743 3 344565522246778888888887777655 34788
Q ss_pred EEeccCCcccccccccccCccCceecccccccccccCCC
Q 017858 318 LVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 318 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~ 356 (365)
+|++++|++..+|..+. .+|++|++++|. ++ .+|.
T Consensus 266 ~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt-~LP~ 300 (754)
T PRK15370 266 SLDLFHNKISCLPENLP--EELRYLSVYDNS-IR-TLPA 300 (754)
T ss_pred EEECcCCccCccccccC--CCCcEEECCCCc-cc-cCcc
Confidence 88888888888887664 478889998887 67 6775
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.74 E-value=4.8e-06 Score=78.66 Aligned_cols=104 Identities=17% Similarity=0.255 Sum_probs=76.2
Q ss_pred EEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCCCCCCc
Q 017858 239 IEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNLSAKKL 316 (365)
Q Consensus 239 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~~l~~L 316 (365)
++.+.+..+++..+ |..+.....|..||.+.| .+..+|. +.+.+|+.|.++.|.+..+|...+--.|
T Consensus 145 Lkvli~sNNkl~~l---p~~ig~~~tl~~ld~s~n--------ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpL 213 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSL---PEEIGLLPTLAHLDVSKN--------EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPL 213 (722)
T ss_pred ceeEEEecCccccC---CcccccchhHHHhhhhhh--------hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCce
Confidence 44555555554333 455566677788888544 3557777 7888888888888888888887753348
Q ss_pred eEEeccCCcccccccccccCccCceecccccccccccCC
Q 017858 317 VLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIP 355 (365)
Q Consensus 317 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp 355 (365)
..||+|.|++..+|-.|.+|..|++|.|.+|. ++ .-|
T Consensus 214 i~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-Lq-SPP 250 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQ-SPP 250 (722)
T ss_pred eeeecccCceeecchhhhhhhhheeeeeccCC-CC-CCh
Confidence 88899888888889888889999998888887 66 455
No 36
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.71 E-value=0.00034 Score=69.60 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=123.1
Q ss_pred EEEEEEeCCCChH------hHHHHHccCCCCCCCcEEEEEeCchhHHHhc--C-ccceEEeC----CCCHHHHHHHHHHh
Q 017858 2 KVLIVFDDVTCFS------QIESLIGSLDWLTPVSRIIITTRNKQVLRNW--G-VRKIYEMK----ALEYHHAIRLFSRH 68 (365)
Q Consensus 2 r~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~--~-~~~~~~l~----~L~~~e~~~L~~~~ 68 (365)
+..+||||..-.. ..+.+.... ..+-.++||||...-.... . .....+++ .|+.+|+-++|...
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~ 206 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR 206 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc
Confidence 5689999987322 244554443 4678899999998422110 0 01123333 48899999999776
Q ss_pred hhcCCCCCccHHHHHHHHHHHcCCCchhHHHHhHhhccc-CHHHHHHHHHHHhhcCcccHH-HHHHHHHhcCChhhhhhh
Q 017858 69 AFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKR-EKEVWESATDKLQRILYPSIL-EVLKISYDSLDDKEKNIF 146 (365)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~-~~l~~sy~~L~~~~~~~~ 146 (365)
.. .+-....++.+.+..+|.+-|+..++=.+++. +.+.-...+.. . .+.+. -...--++.||++.|..+
T Consensus 207 ~~-----l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG---~-~~~l~dYL~eeVld~Lp~~l~~FL 277 (894)
T COG2909 207 GS-----LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG---A-ASHLSDYLVEEVLDRLPPELRDFL 277 (894)
T ss_pred CC-----CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc---h-HHHHHHHHHHHHHhcCCHHHHHHH
Confidence 41 11223567889999999999999999888833 33322221111 1 01111 112335788999999999
Q ss_pred hhhccccCCcCHHHHHHHHHHcCCCcccchhHHhhcCceeE--cc-CCcEEecHHHHHHHHHHHhhcC
Q 017858 147 LDVACFFQGEDVDLVMKFFNASGFYPEIGMSVLVDKSLIAI--DS-HKKITMHDLLQELGREIVRQES 211 (365)
Q Consensus 147 ~~ls~fp~~~~~~~l~~~w~~~~~~~~~~l~~L~~~sLl~~--~~-~~~~~~H~lv~~~a~~~~~~~~ 211 (365)
+-+|+++.-- +++......+ ..+...+++|.+++|+-. ++ .+.|+.|.++.+|.+.....+.
T Consensus 278 l~~svl~~f~--~eL~~~Ltg~-~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 278 LQTSVLSRFN--DELCNALTGE-ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred HHHHhHHHhh--HHHHHHHhcC-CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 9999886531 2333333222 123345899999999873 33 6799999999999998877643
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.64 E-value=1.8e-05 Score=74.95 Aligned_cols=101 Identities=21% Similarity=0.272 Sum_probs=60.2
Q ss_pred ceEEEEeeccccccccccCccccCCC-CCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCC-C
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKM-PKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNL-S 312 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~-~ 312 (365)
+.+..+.+..+.+..+ +.....+ ++|+.|+++ ++ .+..+|. ..+++|+.|++++|++..+|... .
T Consensus 116 ~~l~~L~l~~n~i~~i---~~~~~~~~~nL~~L~l~-~N-------~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 116 TNLTSLDLDNNNITDI---PPLIGLLKSNLKELDLS-DN-------KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred cceeEEecCCcccccC---ccccccchhhccccccc-cc-------chhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 3345554444444322 2222333 266777773 33 3545542 66677777777777777777666 4
Q ss_pred CCCceEEeccCCcccccccccccCccCceecccccc
Q 017858 313 AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
+.+|+.|++++|++..+|..+..+.+|+.|.+++|.
T Consensus 185 ~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 677777777777777777666666667777777664
No 38
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.55 E-value=0.0013 Score=60.08 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=94.9
Q ss_pred CcEEEEEeCchhHHHhc--CccceEEeCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCchhHHHHhHhhcc
Q 017858 29 VSRIIITTRNKQVLRNW--GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHK 106 (365)
Q Consensus 29 gs~ilvTTR~~~v~~~~--~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~ 106 (365)
.+-|..|||...+.... .....+++++++.+|..+++.+.+....... .++.+..|++.|+|.|-.+..++..+..
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~--~~~al~~ia~~~~G~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEI--EPEAALEIARRSRGTPRIANRLLRRVRD 207 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45566677765443321 1124689999999999999998875433222 2366788999999999766544443210
Q ss_pred -------c--CHHHHHHHHHHHhhcCcccHHHHHHHHHhcCChhhhhhhh-hhccccCC-cCHHHHHHHHHHcCCCcccc
Q 017858 107 -------R--EKEVWESATDKLQRILYPSILEVLKISYDSLDDKEKNIFL-DVACFFQG-EDVDLVMKFFNASGFYPEIG 175 (365)
Q Consensus 107 -------~--~~~~w~~~~~~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~-~ls~fp~~-~~~~~l~~~w~~~~~~~~~~ 175 (365)
. +.+... .....+...|..++++.+..+. ..+.+..+ +..+.+...+.......+..
T Consensus 208 ~a~~~~~~~it~~~v~------------~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~ 275 (305)
T TIGR00635 208 FAQVRGQKIINRDIAL------------KALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDV 275 (305)
T ss_pred HHHHcCCCCcCHHHHH------------HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHh
Confidence 0 111111 1122245567788888888777 44566543 66677777765555555666
Q ss_pred hh-HHhhcCceeEccCCcE
Q 017858 176 MS-VLVDKSLIAIDSHKKI 193 (365)
Q Consensus 176 l~-~L~~~sLl~~~~~~~~ 193 (365)
++ .|++.+|++....|++
T Consensus 276 ~e~~Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 276 YEPYLLQIGFLQRTPRGRI 294 (305)
T ss_pred hhHHHHHcCCcccCCchhh
Confidence 77 6999999986655543
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.52 E-value=3.9e-05 Score=72.67 Aligned_cols=96 Identities=16% Similarity=0.315 Sum_probs=50.8
Q ss_pred ccCCCCCCceEEEecCccCCCccccccccCC-C-CCCcccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcccccccccc
Q 017858 258 TFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-P-GFAEVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDIERLWHCVK 334 (365)
Q Consensus 258 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~-~l~~L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l~~lp~~i~ 334 (365)
.+..+++|+.|+++ ++ .+..+|. . .++.|+.|++++|.+..+|..++ +.+|++|.+++|.+...|..+.
T Consensus 158 ~~~~l~~L~~L~l~-~N-------~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~ 229 (394)
T COG4886 158 PLRNLPNLKNLDLS-FN-------DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLS 229 (394)
T ss_pred hhhccccccccccC-Cc-------hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhh
Confidence 34455556666663 33 3445555 2 55556666666666666665553 4446666666655555555555
Q ss_pred cCccCceecccccccccccCCC-CCCCCCC
Q 017858 335 HYSKLNQIIHAACNMLTAKIPN-PTLMPRM 363 (365)
Q Consensus 335 ~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L 363 (365)
++.++..+.+.+|+ +. .+|. ++.++++
T Consensus 230 ~~~~l~~l~l~~n~-~~-~~~~~~~~l~~l 257 (394)
T COG4886 230 NLKNLSGLELSNNK-LE-DLPESIGNLSNL 257 (394)
T ss_pred hcccccccccCCce-ee-eccchhcccccc
Confidence 55555555555554 33 3343 4444433
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.52 E-value=4.5e-06 Score=64.71 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=69.5
Q ss_pred CCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCccccccccccc
Q 017858 260 TKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKH 335 (365)
Q Consensus 260 ~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~lp~~i~~ 335 (365)
.+.-.|+..+++.| .++.+|+ ..++.+..|++.+|.|..+|..+ .++.|+.|+++.|.+...|.-|-.
T Consensus 50 ~~~~el~~i~ls~N--------~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~ 121 (177)
T KOG4579|consen 50 SKGYELTKISLSDN--------GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAP 121 (177)
T ss_pred hCCceEEEEecccc--------hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHH
Confidence 34445666788544 4557777 55678899999999999999888 599999999999999999999988
Q ss_pred CccCceecccccccccccCC
Q 017858 336 YSKLNQIIHAACNMLTAKIP 355 (365)
Q Consensus 336 l~~L~~L~l~~~~~l~~~lp 355 (365)
|.+|-+|+..+|. .. .+|
T Consensus 122 L~~l~~Lds~~na-~~-eid 139 (177)
T KOG4579|consen 122 LIKLDMLDSPENA-RA-EID 139 (177)
T ss_pred HHhHHHhcCCCCc-cc-cCc
Confidence 9999999998887 44 465
No 41
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.46 E-value=0.00021 Score=65.91 Aligned_cols=156 Identities=13% Similarity=0.093 Sum_probs=94.6
Q ss_pred CcEEEEEeCchhHHHhc--CccceEEeCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCchhHHHHhHhhcc
Q 017858 29 VSRIIITTRNKQVLRNW--GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHK 106 (365)
Q Consensus 29 gs~ilvTTR~~~v~~~~--~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~ 106 (365)
.+-|..|||...+.... .....+++++++.++..+++.+.+......-+ ++.+..|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~--~~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID--EEGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 34566677755443321 11246899999999999999998755433222 36788999999999965444333221
Q ss_pred cCHHHHHHHHH--HHhhcCcccHHHHHHHHHhcCChhhhhhhh-hhccccCC-cCHHHHHHHHHHcCCCcccchh-HHhh
Q 017858 107 REKEVWESATD--KLQRILYPSILEVLKISYDSLDDKEKNIFL-DVACFFQG-EDVDLVMKFFNASGFYPEIGMS-VLVD 181 (365)
Q Consensus 107 ~~~~~w~~~~~--~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~-~ls~fp~~-~~~~~l~~~w~~~~~~~~~~l~-~L~~ 181 (365)
.|..... .+...........+...+..|++..+..+. ....|+.+ +..+.+...+..+....+..++ .|++
T Consensus 228 ----~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 228 ----DFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQ 303 (328)
T ss_pred ----HHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHH
Confidence 1111100 000000012233445667778888888886 55667654 6777777766555445555677 8999
Q ss_pred cCceeEccCC
Q 017858 182 KSLIAIDSHK 191 (365)
Q Consensus 182 ~sLl~~~~~~ 191 (365)
.+|++....|
T Consensus 304 ~~li~~~~~g 313 (328)
T PRK00080 304 QGFIQRTPRG 313 (328)
T ss_pred cCCcccCCch
Confidence 9999866444
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.39 E-value=4.7e-05 Score=69.07 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=69.8
Q ss_pred CccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCccccc
Q 017858 255 NPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERL 329 (365)
Q Consensus 255 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~l 329 (365)
|...|.++++|+.|+| +|+ +|+.+.. ..+..++.|.|..|+++.+.+.+ ++..|++|+|.+|+|+.+
T Consensus 266 P~~cf~~L~~L~~lnl-snN-------~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 266 PAKCFKKLPNLRKLNL-SNN-------KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred hHHHHhhcccceEecc-CCC-------ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 3456899999999999 455 5655555 66788999999999999888776 599999999999999887
Q ss_pred -ccccccCccCceeccccc
Q 017858 330 -WHCVKHYSKLNQIIHAAC 347 (365)
Q Consensus 330 -p~~i~~l~~L~~L~l~~~ 347 (365)
|-.+..+.+|..|++-.|
T Consensus 338 ~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 338 APGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred ecccccccceeeeeehccC
Confidence 777889999999988655
No 43
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.36 E-value=8.4e-05 Score=68.15 Aligned_cols=205 Identities=19% Similarity=0.227 Sum_probs=140.3
Q ss_pred CEEEEEEeCCCChHh-HHHHHccCCCCCCCcEEEEEeCchhHHHhcCccceEEeCCCCHH-HHHHHHHHhhhcCCC---C
Q 017858 1 MKVLIVFDDVTCFSQ-IESLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEMKALEYH-HAIRLFSRHAFKQNH---P 75 (365)
Q Consensus 1 kr~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~l~~L~~~-e~~~L~~~~~~~~~~---~ 75 (365)
+|.++|+||..+.-+ ...+..++..+.+.-.|+.|+|+.... ..+..+.+.+|+.- ++.++|...+..... .
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 467889999987643 445555555556666799999986432 44567888888865 799998877643322 1
Q ss_pred CccHHHHHHHHHHHcCCCchhHHHHhHhhcccCHHHHHHHHH----HHhhcC------cccHHHHHHHHHhcCChhhhhh
Q 017858 76 DVGYEELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATD----KLQRIL------YPSILEVLKISYDSLDDKEKNI 145 (365)
Q Consensus 76 ~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~----~l~~~~------~~~~~~~l~~sy~~L~~~~~~~ 145 (365)
...-.....+|.++..|.|++|..+++..+.....+....++ .++... .......+.+||.-|....+..
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 223346788999999999999999999998765444433333 233221 2466789999999999999999
Q ss_pred hhhhccccCCcCHHHHHHHHHHcCCC-------cccchhHHhhcCceeEcc---CCcEEecHHHHHHHHHHHhhc
Q 017858 146 FLDVACFFQGEDVDLVMKFFNASGFY-------PEIGMSVLVDKSLIAIDS---HKKITMHDLLQELGREIVRQE 210 (365)
Q Consensus 146 ~~~ls~fp~~~~~~~l~~~w~~~~~~-------~~~~l~~L~~~sLl~~~~---~~~~~~H~lv~~~a~~~~~~~ 210 (365)
|.-++.|...|+.+ ...|.+.|-. ....+..+++.+++.... .-.|+.-+-++.|+.....+.
T Consensus 245 ~~rLa~~~g~f~~~--l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 245 FGRLAVFVGGFDLG--LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred hcchhhhhhhhccc--HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998776 2223332322 123366788888887665 336777777777777766543
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=6.9e-05 Score=68.85 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=31.4
Q ss_pred CCCCcccEEEEeCCCCCCCCCCC--C-CCCceEEeccCCccccc--ccc-----cccCccCceecccccc
Q 017858 289 PGFAEVKYLHWYGYPLKSLPSNL--S-AKKLVLVEVPDSDIERL--WHC-----VKHYSKLNQIIHAACN 348 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp~~~--~-l~~L~~L~l~~~~l~~l--p~~-----i~~l~~L~~L~l~~~~ 348 (365)
..+..|+.|+|++|.+-.++... + ++.|..|+++.|++.++ |+. ...+++|++|+++.|+
T Consensus 243 ~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 243 KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 34455555666666555554322 2 55566666666555443 433 2345556666666555
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.25 E-value=0.00012 Score=69.81 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=75.2
Q ss_pred CCCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCCC
Q 017858 234 TGTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNLS 312 (365)
Q Consensus 234 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~~ 312 (365)
.....++.+.+..+.+..+ ...+..+.+|++|+++ ++ .|+.+.. ..++.|+.|++.+|.|..++..-.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i---~~~l~~~~~L~~L~ls-~N-------~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~ 160 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKI---ENLLSSLVNLQVLDLS-FN-------KITKLEGLSTLTLLKELNLSGNLISDISGLES 160 (414)
T ss_pred ccccceeeeeccccchhhc---ccchhhhhcchheecc-cc-------ccccccchhhccchhhheeccCcchhccCCcc
Confidence 3445566666666665433 1115678888999995 44 4666777 777778889999998888875556
Q ss_pred CCCceEEeccCCcccccccc-cccCccCceecccccc
Q 017858 313 AKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACN 348 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 348 (365)
+.+|+.+++++|.+..+... ...+.+|+.+.+++|.
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 88889999999888877543 5778888888888876
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=2.8e-05 Score=60.36 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=67.9
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCC-C
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNL-S 312 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~-~ 312 (365)
-..+..+.+..+. ...+++....+++.+..|++ .++ +|..+|. ..++.||.|+++.|++...|.-+ .
T Consensus 52 ~~el~~i~ls~N~--fk~fp~kft~kf~t~t~lNl-~~n-------eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~ 121 (177)
T KOG4579|consen 52 GYELTKISLSDNG--FKKFPKKFTIKFPTATTLNL-ANN-------EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAP 121 (177)
T ss_pred CceEEEEecccch--hhhCCHHHhhccchhhhhhc-chh-------hhhhchHHHhhhHHhhhcccccCccccchHHHHH
Confidence 3445556555444 35566666667788999999 455 6778888 88899999999999999999888 5
Q ss_pred CCCceEEeccCCccccccccc
Q 017858 313 AKKLVLVEVPDSDIERLWHCV 333 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~i 333 (365)
|.+|-+|+..+|.+.++|-..
T Consensus 122 L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 122 LIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred HHhHHHhcCCCCccccCcHHH
Confidence 999999999999888887653
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.15 E-value=0.0009 Score=55.60 Aligned_cols=97 Identities=14% Similarity=0.229 Sum_probs=67.9
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCC---CCC
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLP---SNL 311 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp---~~~ 311 (365)
....+.+..+++.. ...|..++.|+.|.+ +|+ +|+.+.+ ..+++|..|.+.+|+|..+- +-.
T Consensus 43 ~~d~iDLtdNdl~~----l~~lp~l~rL~tLll-~nN-------rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK----LDNLPHLPRLHTLLL-NNN-------RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA 110 (233)
T ss_pred ccceecccccchhh----cccCCCccccceEEe-cCC-------cceeeccchhhhccccceEEecCcchhhhhhcchhc
Confidence 34444455554433 356778888999999 677 6777766 56688899999998876543 333
Q ss_pred CCCCceEEeccCCccccccc----ccccCccCceecccc
Q 017858 312 SAKKLVLVEVPDSDIERLWH----CVKHYSKLNQIIHAA 346 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~ 346 (365)
.++.|++|-+-+|..+.-+. -+..+++|+.||...
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 57788899888887765532 357788888888764
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.09 E-value=5.6e-05 Score=73.67 Aligned_cols=84 Identities=14% Similarity=0.198 Sum_probs=64.9
Q ss_pred ccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCccccccccc
Q 017858 256 PSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCV 333 (365)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~lp~~i 333 (365)
..++.-++.|+.|+|++|. +++... ..++.|+.|+|++|.+..+|.-- .-.+|+.|.+++|-++.+ .++
T Consensus 180 D~SLqll~ale~LnLshNk--------~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gi 250 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNK--------FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGI 250 (1096)
T ss_pred HHHHHHHHHhhhhccchhh--------hhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhH
Confidence 4555666788899997664 334445 77788999999999998888644 222499999999988888 478
Q ss_pred ccCccCceecccccc
Q 017858 334 KHYSKLNQIIHAACN 348 (365)
Q Consensus 334 ~~l~~L~~L~l~~~~ 348 (365)
.+|.+|+.||++.|-
T Consensus 251 e~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNL 265 (1096)
T ss_pred HhhhhhhccchhHhh
Confidence 899999999999885
No 49
>PF05729 NACHT: NACHT domain
Probab=97.02 E-value=0.0019 Score=52.75 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=48.5
Q ss_pred CEEEEEEeCCCChHh---------HHHHHccC-CC-CCCCcEEEEEeCchhH---HHhcCccceEEeCCCCHHHHHHHHH
Q 017858 1 MKVLIVFDDVTCFSQ---------IESLIGSL-DW-LTPVSRIIITTRNKQV---LRNWGVRKIYEMKALEYHHAIRLFS 66 (365)
Q Consensus 1 kr~LlVlDdv~~~~~---------~~~l~~~~-~~-~~~gs~ilvTTR~~~v---~~~~~~~~~~~l~~L~~~e~~~L~~ 66 (365)
++++||+|++++... +..+...+ .. ..++++++||||.... .........+++.+|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 478999999985432 22233222 21 2568999999999876 2223444589999999999999998
Q ss_pred Hhh
Q 017858 67 RHA 69 (365)
Q Consensus 67 ~~~ 69 (365)
++.
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 775
No 50
>PRK06893 DNA replication initiation factor; Validated
Probab=96.94 E-value=0.003 Score=54.98 Aligned_cols=92 Identities=14% Similarity=0.271 Sum_probs=58.7
Q ss_pred EEEEeCCCCh---HhHH-HHHccCCCC-CCCcEEEE-EeCc---------hhHHHhcCccceEEeCCCCHHHHHHHHHHh
Q 017858 4 LIVFDDVTCF---SQIE-SLIGSLDWL-TPVSRIII-TTRN---------KQVLRNWGVRKIYEMKALEYHHAIRLFSRH 68 (365)
Q Consensus 4 LlVlDdv~~~---~~~~-~l~~~~~~~-~~gs~ilv-TTR~---------~~v~~~~~~~~~~~l~~L~~~e~~~L~~~~ 68 (365)
+||+||+|.. .+|+ .+...+... ..|+.+|| |++. +.+...+.....+++++++.++.++++.+.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 8999999963 3454 233322211 23555655 4544 355665565678999999999999999998
Q ss_pred hhcCCCCCccHHHHHHHHHHHcCCCchhH
Q 017858 69 AFKQNHPDVGYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~~~c~glPlai 97 (365)
+.......+ ++...-|++.+.|-.-++
T Consensus 174 a~~~~l~l~--~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 174 AYQRGIELS--DEVANFLLKRLDRDMHTL 200 (229)
T ss_pred HHHcCCCCC--HHHHHHHHHhccCCHHHH
Confidence 865443222 256677777777665444
No 51
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.94 E-value=0.0051 Score=53.28 Aligned_cols=96 Identities=24% Similarity=0.256 Sum_probs=52.7
Q ss_pred EEEEEEeCCCChH-----------hHHHHHccCCCCCCCcEEEEEeCchhHHHh--------cCccceEEeCCCCHHHHH
Q 017858 2 KVLIVFDDVTCFS-----------QIESLIGSLDWLTPVSRIIITTRNKQVLRN--------WGVRKIYEMKALEYHHAI 62 (365)
Q Consensus 2 r~LlVlDdv~~~~-----------~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~--------~~~~~~~~l~~L~~~e~~ 62 (365)
+.+||+||+.... .+..+........+.+ +++++....+... .+....+.+++|+.++++
T Consensus 119 ~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~ 197 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAR 197 (234)
T ss_dssp CEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHH
T ss_pred cEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHH
Confidence 5899999987544 1333333323233344 5555555544443 122245999999999999
Q ss_pred HHHHHhhhcCCCCCccHHHHHHHHHHHcCCCchhHHH
Q 017858 63 RLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKV 99 (365)
Q Consensus 63 ~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 99 (365)
+++...+-..... +.-.+...+|...+||.|..|..
T Consensus 198 ~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 198 EFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 9999976433111 12346679999999999987753
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.92 E-value=0.00042 Score=66.09 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=68.8
Q ss_pred ccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCCCCCCceEEeccCCccccccccccc
Q 017858 258 TFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKH 335 (365)
Q Consensus 258 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~ 335 (365)
.+..+.+|..|++. ++ .|+.+.. ..+.+|++|++++|.|..+...-.+..|+.|++++|.+..++ ++..
T Consensus 90 ~l~~~~~l~~l~l~-~n-------~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~ 160 (414)
T KOG0531|consen 90 HLSKLKSLEALDLY-DN-------KIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLES 160 (414)
T ss_pred ccccccceeeeecc-cc-------chhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCcc
Confidence 35677888999994 44 4556655 668999999999999998875556888999999999998874 5667
Q ss_pred CccCceecccccccccccCCC
Q 017858 336 YSKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 336 l~~L~~L~l~~~~~l~~~lp~ 356 (365)
+++|+.+++++|. +. .++.
T Consensus 161 l~~L~~l~l~~n~-i~-~ie~ 179 (414)
T KOG0531|consen 161 LKSLKLLDLSYNR-IV-DIEN 179 (414)
T ss_pred chhhhcccCCcch-hh-hhhh
Confidence 8999999999987 44 4544
No 53
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.84 E-value=0.00033 Score=64.11 Aligned_cols=109 Identities=16% Similarity=0.233 Sum_probs=69.5
Q ss_pred ceEEEEeecccccccc--ccCccccCCC-CCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCC-----C
Q 017858 237 EKIEGICLDMSKIKEI--RLNPSTFTKM-PKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLK-----S 306 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~--~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~-----~ 306 (365)
..++.+.+..+..... ......+..+ ++|+.|++++|.+.+. ....++. ..+.+|++|++++|.+. .
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA---SCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch---HHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 5577776665544311 1112345566 8899999965553320 0112222 55578999999999876 2
Q ss_pred CCCCC-CCCCceEEeccCCccc-----ccccccccCccCceecccccc
Q 017858 307 LPSNL-SAKKLVLVEVPDSDIE-----RLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 307 lp~~~-~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~ 348 (365)
++..+ .+++|+.|++++|.+. .++..+..+++|++|++++|.
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 33333 2569999999999764 345556778899999999986
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.78 E-value=0.00067 Score=35.25 Aligned_cols=21 Identities=5% Similarity=0.230 Sum_probs=13.7
Q ss_pred CceEEeccCCccccccccccc
Q 017858 315 KLVLVEVPDSDIERLWHCVKH 335 (365)
Q Consensus 315 ~L~~L~l~~~~l~~lp~~i~~ 335 (365)
+|++|++++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777766667666544
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.71 E-value=0.00018 Score=70.21 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=33.7
Q ss_pred cccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcccccccccccCccCceecccccccccccCCC
Q 017858 293 EVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 293 ~L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~ 356 (365)
.|.+.+.++|.+..+..++. ++.|+.|||++|++.... .+..|++|++|||+.|. +. .+|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~-~vp~ 226 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LR-HVPQ 226 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hc-cccc
Confidence 34445555555555555554 555666666666555553 55555666666666555 44 4554
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.68 E-value=0.0024 Score=53.17 Aligned_cols=78 Identities=12% Similarity=0.201 Sum_probs=61.8
Q ss_pred CCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCCC--CCCceEEeccCCccccccc--ccccCc
Q 017858 263 PKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNLS--AKKLVLVEVPDSDIERLWH--CVKHYS 337 (365)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~~--l~~L~~L~l~~~~l~~lp~--~i~~l~ 337 (365)
.+...+|| .++ .+..++. ..+..|.+|.+..|.|..+.+.+. +++|..|.|.+|++.++-+ .+-.++
T Consensus 42 d~~d~iDL-tdN-------dl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 42 DQFDAIDL-TDN-------DLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred cccceecc-ccc-------chhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCC
Confidence 45567888 455 4546666 788899999999999999998883 8899999999998877632 346678
Q ss_pred cCceecccccc
Q 017858 338 KLNQIIHAACN 348 (365)
Q Consensus 338 ~L~~L~l~~~~ 348 (365)
+|++|.+-+|.
T Consensus 114 ~L~~Ltll~Np 124 (233)
T KOG1644|consen 114 KLEYLTLLGNP 124 (233)
T ss_pred ccceeeecCCc
Confidence 99999888775
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.0012 Score=57.03 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=41.2
Q ss_pred ccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCC---CCCCCCCCCceEEeccCCccccccc-
Q 017858 258 TFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKS---LPSNLSAKKLVLVEVPDSDIERLWH- 331 (365)
Q Consensus 258 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~---lp~~~~l~~L~~L~l~~~~l~~lp~- 331 (365)
.|..+++|+.|.+|.|+... .. .++- ..+++|+++++++|+|+- +++--.+.+|..|++..|....+-+
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~----~~-~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dy 134 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRV----SG-GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDY 134 (260)
T ss_pred cCCCcchhhhhcccCCcccc----cc-cceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccH
Confidence 34555666666665553211 00 1222 334666666666666543 2211135566666666665444421
Q ss_pred ---ccccCccCceecccc
Q 017858 332 ---CVKHYSKLNQIIHAA 346 (365)
Q Consensus 332 ---~i~~l~~L~~L~l~~ 346 (365)
.+.-+++|++||-..
T Consensus 135 re~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 135 REKVFLLLPSLKYLDGCD 152 (260)
T ss_pred HHHHHHHhhhhccccccc
Confidence 124456666665543
No 58
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.60 E-value=0.00074 Score=61.76 Aligned_cols=110 Identities=14% Similarity=0.193 Sum_probs=72.7
Q ss_pred ceEEEEeeccccccccc--cCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCC-----C
Q 017858 237 EKIEGICLDMSKIKEIR--LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKS-----L 307 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~-----l 307 (365)
+.++.+.+..+...... .....+..++.|+.|+++.|.+.+ ..+..++. ..+++|++|++++|.+.. +
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 213 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD---AGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL 213 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch---HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence 67788877777654211 113456777899999996655332 11112333 455799999999998752 3
Q ss_pred CCCC-CCCCceEEeccCCccccc-cccc-c----cCccCceeccccccc
Q 017858 308 PSNL-SAKKLVLVEVPDSDIERL-WHCV-K----HYSKLNQIIHAACNM 349 (365)
Q Consensus 308 p~~~-~l~~L~~L~l~~~~l~~l-p~~i-~----~l~~L~~L~l~~~~~ 349 (365)
+..+ .+++|++|++++|.+... +..+ . ..+.|++|++++|..
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 3444 378999999999987642 2222 1 247999999999973
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.55 E-value=0.00081 Score=67.66 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=67.3
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCC---C
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSN---L 311 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~---~ 311 (365)
.|.++++.+......... ....+.++++|+.||+|+.+ ++.+.. +.|++|+.|.+.+-.+.+-+.- +
T Consensus 147 LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~Tn--------I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTN--------ISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred CcccceEEecCceecchh-HHHHhhccCccceeecCCCC--------ccCcHHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 456666654443321111 13456788899999996444 445545 8888888888888776654432 2
Q ss_pred CCCCceEEeccCCccccccc-------ccccCccCceecccccc
Q 017858 312 SAKKLVLVEVPDSDIERLWH-------CVKHYSKLNQIIHAACN 348 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~~lp~-------~i~~l~~L~~L~l~~~~ 348 (365)
+|++|++||+|......-|. .-..|++||.||.|++.
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 58999999998875433332 12358899999998875
No 60
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.39 E-value=0.094 Score=46.68 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=65.1
Q ss_pred CEEEEEEeCCCChH--hHHHHHccCC---CCCCCcEEEEEeCchhHHHhcC----------ccceEEeCCCCHHHHHHHH
Q 017858 1 MKVLIVFDDVTCFS--QIESLIGSLD---WLTPVSRIIITTRNKQVLRNWG----------VRKIYEMKALEYHHAIRLF 65 (365)
Q Consensus 1 kr~LlVlDdv~~~~--~~~~l~~~~~---~~~~gs~ilvTTR~~~v~~~~~----------~~~~~~l~~L~~~e~~~L~ 65 (365)
++.+||+||++... .++.+..... .+.....|++|.... ...... ....+++++++.+|..+++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 36799999998653 3554432111 122233455655433 221111 1236789999999999999
Q ss_pred HHhhhcCCC--CCccHHHHHHHHHHHcCCCchhHHHHhHhh
Q 017858 66 SRHAFKQNH--PDVGYEELSCKVMKYAQGVPLALKVLGCFL 104 (365)
Q Consensus 66 ~~~~~~~~~--~~~~~~~~~~~i~~~c~glPlai~~~~~~l 104 (365)
...+..... ...-..+..+.|++.++|.|..|..++..+
T Consensus 202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 202 EHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 887643221 112234788999999999999998888776
No 61
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.00039 Score=64.05 Aligned_cols=108 Identities=13% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCC-CCCCCCC
Q 017858 234 TGTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYP-LKSLPSN 310 (365)
Q Consensus 234 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~-i~~lp~~ 310 (365)
...+.++.+.++.+.... ......-..++.|+.|.++++.+. ++ .+-. ..+++|..|++.+|. +..--.+
T Consensus 169 eqLp~Le~LNls~Nrl~~-~~~s~~~~~l~~lK~L~l~~CGls--~k----~V~~~~~~fPsl~~L~L~~N~~~~~~~~~ 241 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSN-FISSNTTLLLSHLKQLVLNSCGLS--WK----DVQWILLTFPSLEVLYLEANEIILIKATS 241 (505)
T ss_pred HhcccchhcccccccccC-CccccchhhhhhhheEEeccCCCC--HH----HHHHHHHhCCcHHHhhhhcccccceecch
Confidence 345566666555544321 111122235566777777433211 00 1111 455777788888774 2111111
Q ss_pred CC-CCCceEEeccCCcccccc--cccccCccCceecccccc
Q 017858 311 LS-AKKLVLVEVPDSDIERLW--HCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 311 ~~-l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 348 (365)
.. +..|+.|||++|.+-.+| .-++.++.|..|+++.|.
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence 22 678889999999887776 346888888888888776
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.37 E-value=0.0017 Score=65.30 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=55.0
Q ss_pred cccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcccccc--c
Q 017858 257 STFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDIERLW--H 331 (365)
Q Consensus 257 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l~~lp--~ 331 (365)
..-..+|.|+.|.+++-.+.. . ++.. .++++|++||+++++++.+ ..++ |+||++|.+++=.+..-+ .
T Consensus 142 kig~~LPsL~sL~i~~~~~~~---~---dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~ 214 (699)
T KOG3665|consen 142 KIGTMLPSLRSLVISGRQFDN---D---DFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLI 214 (699)
T ss_pred HHhhhCcccceEEecCceecc---h---hHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHH
Confidence 334566888888883222110 0 1222 6778888888888888877 4554 888888887765554322 2
Q ss_pred ccccCccCceecccccc
Q 017858 332 CVKHYSKLNQIIHAACN 348 (365)
Q Consensus 332 ~i~~l~~L~~L~l~~~~ 348 (365)
.+.+|++|++||+|..+
T Consensus 215 ~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhcccCCCeeeccccc
Confidence 45678888888888765
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.06 E-value=0.0072 Score=56.55 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=57.3
Q ss_pred cCCCCCCceEEEecCccCCCccccccccCCCCCCcccEEEEeCCC-CCCCCCCCCCCCceEEeccCC-cccccccccccC
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGYP-LKSLPSNLSAKKLVLVEVPDS-DIERLWHCVKHY 336 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~~-i~~lp~~~~l~~L~~L~l~~~-~l~~lp~~i~~l 336 (365)
+..+.+++.|+++ ++ .++.+|. -..+|+.|.++++. +..+|..+ ..+|++|++++| .+..+|.++
T Consensus 48 ~~~~~~l~~L~Is-~c-------~L~sLP~-LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~sL--- 114 (426)
T PRK15386 48 IEEARASGRLYIK-DC-------DIESLPV-LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPESV--- 114 (426)
T ss_pred HHHhcCCCEEEeC-CC-------CCcccCC-CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccccc---
Confidence 3446889999994 55 4666763 12468999999855 77788654 468999999999 888888754
Q ss_pred ccCceeccccc--ccccccCCC-CCCC
Q 017858 337 SKLNQIIHAAC--NMLTAKIPN-PTLM 360 (365)
Q Consensus 337 ~~L~~L~l~~~--~~l~~~lp~-~~~l 360 (365)
+.|+++.+ ..+. .+|. +..|
T Consensus 115 ---e~L~L~~n~~~~L~-~LPssLk~L 137 (426)
T PRK15386 115 ---RSLEIKGSATDSIK-NVPNGLTSL 137 (426)
T ss_pred ---ceEEeCCCCCcccc-cCcchHhhe
Confidence 44445443 3355 6765 4433
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.05 E-value=0.0071 Score=56.59 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=49.0
Q ss_pred ceEEEEeeccccccccccCccccCCC-CCCceEEEecCccCCCccccccccCCCCCCcccEEEEeCC-CCCCCCCCCCCC
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKM-PKLRFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGY-PLKSLPSNLSAK 314 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~-~i~~lp~~~~l~ 314 (365)
...+.+.+..+.+..+ | .+ .+|+.|.+++++ .++.+|..-..+|++|.+++| .+..+|.+
T Consensus 52 ~~l~~L~Is~c~L~sL---P----~LP~sLtsL~Lsnc~-------nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~s---- 113 (426)
T PRK15386 52 RASGRLYIKDCDIESL---P----VLPNELTEITIENCN-------NLTTLPGSIPEGLEKLTVCHCPEISGLPES---- 113 (426)
T ss_pred cCCCEEEeCCCCCccc---C----CCCCCCcEEEccCCC-------CcccCCchhhhhhhheEccCcccccccccc----
Confidence 4455565554433222 2 23 369999995434 455666522368999999998 57778754
Q ss_pred CceEEeccCCc---ccccccccc
Q 017858 315 KLVLVEVPDSD---IERLWHCVK 334 (365)
Q Consensus 315 ~L~~L~l~~~~---l~~lp~~i~ 334 (365)
|+.|+++.+. +..+|.++.
T Consensus 114 -Le~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 114 -VRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred -cceEEeCCCCCcccccCcchHh
Confidence 6666676654 566776543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.00044 Score=60.16 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=67.3
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC---
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL--- 311 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~--- 311 (365)
..+++.+++-.+.+..+ ..+.+|+.|.||.||-| +|+++.+ ..++.|+.|+|+-|.|.++.+-.
T Consensus 18 l~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvN--------kIssL~pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVN--------KISSLAPLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHH----HHHHhcccceeEEeecc--------ccccchhHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 34445554444443222 34568999999999644 4667777 88899999999999998887644
Q ss_pred CCCCceEEeccCCcc-ccccc-----ccccCccCceec
Q 017858 312 SAKKLVLVEVPDSDI-ERLWH-----CVKHYSKLNQII 343 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l-~~lp~-----~i~~l~~L~~L~ 343 (365)
++++|++|.|..|.. .+-+. -+..|++|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 589999999988854 32332 245678888876
No 66
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.48 E-value=0.094 Score=54.54 Aligned_cols=158 Identities=14% Similarity=0.153 Sum_probs=103.4
Q ss_pred cceEEeCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCchhHHHHhHhhccc-------CHHHHHHHHHHHh
Q 017858 48 RKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKR-------EKEVWESATDKLQ 120 (365)
Q Consensus 48 ~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-------~~~~w~~~~~~l~ 120 (365)
...+.|.||+..+.-.+.......... ...+....|+++..|.|+=+..+-.++... +...|..-...+.
T Consensus 211 i~~I~L~PL~~~d~~~lV~~~l~~~~~---~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~ 287 (849)
T COG3899 211 ITTITLAPLSRADTNQLVAATLGCTKL---LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG 287 (849)
T ss_pred eeEEecCcCchhhHHHHHHHHhCCccc---ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC
Confidence 358999999999999999887743222 223678899999999999888777777642 3455554333332
Q ss_pred hcC-cccHHHHHHHHHhcCChhhhhhhhhhccccCCcCHHHHHHHHHHcCCCcccchhHHhhcCceeEcc--------CC
Q 017858 121 RIL-YPSILEVLKISYDSLDDKEKNIFLDVACFFQGEDVDLVMKFFNASGFYPEIGMSVLVDKSLIAIDS--------HK 191 (365)
Q Consensus 121 ~~~-~~~~~~~l~~sy~~L~~~~~~~~~~ls~fp~~~~~~~l~~~w~~~~~~~~~~l~~L~~~sLl~~~~--------~~ 191 (365)
... .+++...+..-.+.||...|..+...|++...|+.+.+...+.......-..+-.....+++.+.. ..
T Consensus 288 ~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~ 367 (849)
T COG3899 288 ILATTDAVVEFLAARLQKLPGTTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVD 367 (849)
T ss_pred CchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccc
Confidence 221 123445688899999999999999999999999888777766432222222233333444444421 11
Q ss_pred c--E-EecHHHHHHHHHHHh
Q 017858 192 K--I-TMHDLLQELGREIVR 208 (365)
Q Consensus 192 ~--~-~~H~lv~~~a~~~~~ 208 (365)
. | -.|+.+++.|-....
T Consensus 368 ~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 368 IATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred hhhHHhhHHHHHHHHhccCc
Confidence 1 2 468888887755443
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.44 E-value=0.0087 Score=28.81 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=5.3
Q ss_pred CceEEeccCCccccc
Q 017858 315 KLVLVEVPDSDIERL 329 (365)
Q Consensus 315 ~L~~L~l~~~~l~~l 329 (365)
+|+.|++++|++.++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 68
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.29 E-value=0.47 Score=44.85 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=99.5
Q ss_pred EEEEEEeCCCChH------hHHHHHccCCCCC-CCcEEEEEeCchhHHHhcC-------ccceEEeCCCCHHHHHHHHHH
Q 017858 2 KVLIVFDDVTCFS------QIESLIGSLDWLT-PVSRIIITTRNKQVLRNWG-------VRKIYEMKALEYHHAIRLFSR 67 (365)
Q Consensus 2 r~LlVlDdv~~~~------~~~~l~~~~~~~~-~gs~ilvTTR~~~v~~~~~-------~~~~~~l~~L~~~e~~~L~~~ 67 (365)
..+||+|+++... .+..+...+.... .+..+|.++....+..... ....+.+.+++.++..+++..
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~ 218 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKD 218 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHH
Confidence 4789999998643 3444443322111 1233666666554433221 124679999999999999998
Q ss_pred hhhcC---CC-CCccHHHHHHHHHHHcCCCchhHHHHhHhhc-----cc---CHHHHHHHHHHHhhcCcccHHHHHHHHH
Q 017858 68 HAFKQ---NH-PDVGYEELSCKVMKYAQGVPLALKVLGCFLH-----KR---EKEVWESATDKLQRILYPSILEVLKISY 135 (365)
Q Consensus 68 ~~~~~---~~-~~~~~~~~~~~i~~~c~glPlai~~~~~~l~-----~~---~~~~w~~~~~~l~~~~~~~~~~~l~~sy 135 (365)
++... .. .++.+..+++......|..+.|+.++-.+.. +. +.+....+.+.+. .....-.+
T Consensus 219 r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~ 291 (394)
T PRK00411 219 RVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVL 291 (394)
T ss_pred HHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHH
Confidence 76321 12 2222333333333335667778776544321 11 4566666655541 23345568
Q ss_pred hcCChhhhhhhhhhcccc----CCcCHHHHHHH----HHHcCCCc------ccchhHHhhcCceeEc
Q 017858 136 DSLDDKEKNIFLDVACFF----QGEDVDLVMKF----FNASGFYP------EIGMSVLVDKSLIAID 188 (365)
Q Consensus 136 ~~L~~~~~~~~~~ls~fp----~~~~~~~l~~~----w~~~~~~~------~~~l~~L~~~sLl~~~ 188 (365)
..||.++|..+..++..- .......+... ....|... ..++..|...++|...
T Consensus 292 ~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 292 RTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 899999988877765332 22333333222 11223221 2357888999998864
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.0066 Score=53.61 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=26.8
Q ss_pred cCCCCCCceEEEecCccCCCccccccccCCCCCCcccEEEEeCCCCC--CCCCCCC-CCCceEEeccCCcc
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGYPLK--SLPSNLS-AKKLVLVEVPDSDI 326 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~~i~--~lp~~~~-l~~L~~L~l~~~~l 326 (365)
+.++|.|++|++++|.+.. .|.++| ..+.+|++|-|.|+.+. ....+.. ++.++.|++|.|++
T Consensus 93 le~lP~l~~LNls~N~L~s----~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSS----DIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred HhcCccceEeeccCCcCCC----ccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 4455555555554443221 222222 23344555555554433 2222222 44455555555533
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.13 E-value=0.0079 Score=31.15 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=17.2
Q ss_pred cCceecccccccccccCCC-CCCC
Q 017858 338 KLNQIIHAACNMLTAKIPN-PTLM 360 (365)
Q Consensus 338 ~L~~L~l~~~~~l~~~lp~-~~~l 360 (365)
+|++||+++|. ++ .+|. |++|
T Consensus 1 ~L~~Ldls~n~-l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN-LT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE-ES-EEGTTTTT-
T ss_pred CccEEECCCCc-CE-eCChhhcCC
Confidence 58999999996 88 8997 7764
No 71
>PRK09087 hypothetical protein; Validated
Probab=94.95 E-value=0.22 Score=43.25 Aligned_cols=91 Identities=9% Similarity=0.082 Sum_probs=58.3
Q ss_pred EEEEeCCCC----hHhHHHHHccCCCCCCCcEEEEEeCc---------hhHHHhcCccceEEeCCCCHHHHHHHHHHhhh
Q 017858 4 LIVFDDVTC----FSQIESLIGSLDWLTPVSRIIITTRN---------KQVLRNWGVRKIYEMKALEYHHAIRLFSRHAF 70 (365)
Q Consensus 4 LlVlDdv~~----~~~~~~l~~~~~~~~~gs~ilvTTR~---------~~v~~~~~~~~~~~l~~L~~~e~~~L~~~~~~ 70 (365)
+|++||+.. .+.+-.+...+. ..|..||+|++. +.....+.....+++++++.++-.+++.+.+-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 688999953 233333333322 235679999974 33444445556899999999999999999884
Q ss_pred cCCCCCccHHHHHHHHHHHcCCCchhHH
Q 017858 71 KQNHPDVGYEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~c~glPlai~ 98 (365)
...-.-+ +++..-|++.+.|-.-++.
T Consensus 168 ~~~~~l~--~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 168 DRQLYVD--PHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HcCCCCC--HHHHHHHHHHhhhhHHHHH
Confidence 4322222 3666777777776665554
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.66 E-value=0.022 Score=27.40 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=8.7
Q ss_pred cccEEEEeCCCCCCCC
Q 017858 293 EVKYLHWYGYPLKSLP 308 (365)
Q Consensus 293 ~L~~L~l~~~~i~~lp 308 (365)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5677777777776665
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.59 E-value=0.018 Score=49.83 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=60.2
Q ss_pred ccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCC--CCC-CCCCCC-CCCCceEEeccCCcccccccc
Q 017858 258 TFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGY--PLK-SLPSNL-SAKKLVLVEVPDSDIERLWHC 332 (365)
Q Consensus 258 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~--~i~-~lp~~~-~l~~L~~L~l~~~~l~~lp~~ 332 (365)
.+..+..|..|++ .|. .++++.. ..|++|++|.++.| ++. .++..+ .+++|++|++++|++..+ .+
T Consensus 38 l~d~~~~le~ls~-~n~-------gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-st 108 (260)
T KOG2739|consen 38 LTDEFVELELLSV-INV-------GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-ST 108 (260)
T ss_pred ccccccchhhhhh-hcc-------ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-cc
Confidence 3445566666666 444 4556656 78889999999999 443 566656 479999999999988653 33
Q ss_pred ---cccCccCceecccccc
Q 017858 333 ---VKHYSKLNQIIHAACN 348 (365)
Q Consensus 333 ---i~~l~~L~~L~l~~~~ 348 (365)
...+.+|..|++.+|.
T Consensus 109 l~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcchhhhhcccCC
Confidence 4677889999999887
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.59 E-value=0.85 Score=42.62 Aligned_cols=92 Identities=10% Similarity=0.089 Sum_probs=59.8
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+++.. +..+.+...+..-..++.+|++|.+.. +.... .-...+.+.+++.++..+.+...... .+
T Consensus 142 ~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~~ 217 (365)
T PRK07471 142 WRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----LP 217 (365)
T ss_pred CEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----CC
Confidence 347899999854 346666665554445666777776653 32222 22358999999999999999876411 11
Q ss_pred cHHHHHHHHHHHcCCCchhHHH
Q 017858 78 GYEELSCKVMKYAQGVPLALKV 99 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~ 99 (365)
......++..++|.|.....
T Consensus 218 --~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 218 --DDPRAALAALAEGSVGRALR 237 (365)
T ss_pred --HHHHHHHHHHcCCCHHHHHH
Confidence 12226789999999975433
No 75
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.54 E-value=0.17 Score=43.67 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=56.2
Q ss_pred EEEEeCCCChH---hH-HHHHccCCC-CCCCcEEEEEeCchh---------HHHhcCccceEEeCCCCHHHHHHHHHHhh
Q 017858 4 LIVFDDVTCFS---QI-ESLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 4 LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
+||+||++... .| +.+...+.. ...+.++|+||+... +...+.....+++.+++.++...++...+
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 79999998543 22 333332221 123347889888542 12222223578999999999999988765
Q ss_pred hcCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 017858 70 FKQNHPDVGYEELSCKVMKYAQGVPLALKVL 100 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 100 (365)
-...... .++....+++.++|.|..+..+
T Consensus 173 ~~~~~~~--~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 173 ARRGLQL--PDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred HHcCCCC--CHHHHHHHHHhccCCHHHHHHH
Confidence 3222211 1255667777788877665443
No 76
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.05 E-value=0.43 Score=39.97 Aligned_cols=87 Identities=17% Similarity=0.278 Sum_probs=59.4
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+||+... +.++.+...+.+..+.+.+|++|++. .+.... .....+++.+++.++..+.+.+. + . .
T Consensus 97 ~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i-~- 170 (188)
T TIGR00678 97 RRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I-S- 170 (188)
T ss_pred eEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-C-
Confidence 457899999754 34666766665555567777777654 222221 12358999999999998888776 1 1 1
Q ss_pred cHHHHHHHHHHHcCCCchh
Q 017858 78 GYEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPla 96 (365)
++.+..|++.++|.|..
T Consensus 171 --~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 171 --EEAAELLLALAGGSPGA 187 (188)
T ss_pred --HHHHHHHHHHcCCCccc
Confidence 35688999999998853
No 77
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.73 E-value=1.6 Score=39.81 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=60.4
Q ss_pred EEEEeCCC--ChHhHHHHHccCCCCCCCcEEEEEeCchhHH-Hhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCccH
Q 017858 4 LIVFDDVT--CFSQIESLIGSLDWLTPVSRIIITTRNKQVL-RNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (365)
Q Consensus 4 LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~-~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~ 79 (365)
++|+|+++ +.+.++.+...+.+...++.+|++|.+.... ... .-...+++.++++++....+.+...+ . .
T Consensus 96 v~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~--~----~ 169 (313)
T PRK05564 96 VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND--I----K 169 (313)
T ss_pred EEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC--C----C
Confidence 56667665 5566888888887777888888888665322 111 12358999999999998877665411 1 1
Q ss_pred HHHHHHHHHHcCCCchhH
Q 017858 80 EELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 80 ~~~~~~i~~~c~glPlai 97 (365)
.+.+..++..++|.|.-+
T Consensus 170 ~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 170 EEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 244678899999988644
No 78
>PF13173 AAA_14: AAA domain
Probab=93.68 E-value=0.11 Score=40.54 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=46.1
Q ss_pred EEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCchhHHHhc------CccceEEeCCCCHHHH
Q 017858 2 KVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNW------GVRKIYEMKALEYHHA 61 (365)
Q Consensus 2 r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~------~~~~~~~l~~L~~~e~ 61 (365)
+.+|++|++....+|......+.+..++.+|++|+......... +-...+++.||+..|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 46899999999888888887777666678999999988766432 1124689999998773
No 79
>PRK08727 hypothetical protein; Validated
Probab=93.42 E-value=0.43 Score=41.60 Aligned_cols=92 Identities=10% Similarity=0.034 Sum_probs=55.4
Q ss_pred EEEEEeCCCCh---HhHH-HHHccCCC-CCCCcEEEEEeCchh---------HHHhcCccceEEeCCCCHHHHHHHHHHh
Q 017858 3 VLIVFDDVTCF---SQIE-SLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWGVRKIYEMKALEYHHAIRLFSRH 68 (365)
Q Consensus 3 ~LlVlDdv~~~---~~~~-~l~~~~~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L~~~~ 68 (365)
-+||+||+... ..|+ .+...+.. ...|..||+||+... +...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 37999999743 2232 22222211 124567999998642 1222223458899999999999999987
Q ss_pred hhcCCCCCccHHHHHHHHHHHcCCCchh
Q 017858 69 AFKQNHPDVGYEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~~~c~glPla 96 (365)
+....-..+ ++...-|++.++|-.-.
T Consensus 175 a~~~~l~l~--~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 175 AQRRGLALD--EAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHcCCCCC--HHHHHHHHHhCCCCHHH
Confidence 754322222 25667777777655433
No 80
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=0.0036 Score=54.67 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=63.1
Q ss_pred CCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCCCCCCceEEeccCCccccccc--ccccCc
Q 017858 261 KMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWH--CVKHYS 337 (365)
Q Consensus 261 ~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~ 337 (365)
.+.+.+.|+. +++ .+..+.- ..++.|.+|.|+-|+|+++-+.-.+++|+.|-|+.|.|..+.+ -+.+|+
T Consensus 17 dl~~vkKLNc-wg~-------~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNC-WGC-------GLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcc-cCC-------CccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 3456677777 444 4545544 7889999999999999998765568999999999999888743 247889
Q ss_pred cCceecccccccc
Q 017858 338 KLNQIIHAACNML 350 (365)
Q Consensus 338 ~L~~L~l~~~~~l 350 (365)
+|+.|-|..|.-.
T Consensus 89 sLr~LWL~ENPCc 101 (388)
T KOG2123|consen 89 SLRTLWLDENPCC 101 (388)
T ss_pred hhhhHhhccCCcc
Confidence 9999999877533
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.30 E-value=0.055 Score=29.11 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=11.4
Q ss_pred CCceEEeccCCcccccccc
Q 017858 314 KKLVLVEVPDSDIERLWHC 332 (365)
Q Consensus 314 ~~L~~L~l~~~~l~~lp~~ 332 (365)
.+|++|+|++|.+..+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.30 E-value=0.055 Score=29.11 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=11.4
Q ss_pred CCceEEeccCCcccccccc
Q 017858 314 KKLVLVEVPDSDIERLWHC 332 (365)
Q Consensus 314 ~~L~~L~l~~~~l~~lp~~ 332 (365)
.+|++|+|++|.+..+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.17 E-value=0.26 Score=38.14 Aligned_cols=110 Identities=18% Similarity=0.320 Sum_probs=53.8
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC-C
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL-S 312 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~-~ 312 (365)
..++.+.+.. . ...+....|..+..|+.+.+. ++ ++.++. ..+..++.+.+.. .+..++... .
T Consensus 12 ~~l~~i~~~~-~--~~~I~~~~F~~~~~l~~i~~~-~~--------~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 12 SNLESITFPN-T--IKKIGENAFSNCTSLKSINFP-NN--------LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp TT--EEEETS-T----EE-TTTTTT-TT-SEEEES-ST--------TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred CCCCEEEECC-C--eeEeChhhccccccccccccc-cc--------ccccceeeeecccccccccccc-ccccccccccc
Confidence 3455555442 2 335667788888889988883 33 334555 5556788888865 666676655 4
Q ss_pred -CCCceEEeccCCcccccccc-cccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 313 -AKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 313 -l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
..+|+.+.+..+ +..++.. +.+. +|+.+.+..+ +. .++. |.+.++|+
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--IT-KIEENAFKNCTKLK 129 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB---S-S----GGG------
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECCC--cc-EECCccccccccCC
Confidence 888999998765 6666444 4565 8888887653 55 6775 77766664
No 84
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=0.03 Score=49.59 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=8.0
Q ss_pred CCceEEEEeeccccc
Q 017858 235 GTEKIEGICLDMSKI 249 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~ 249 (365)
..+.++.+.+..+..
T Consensus 95 ~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSL 109 (418)
T ss_pred cCccceEeeccCCcC
Confidence 455566665555443
No 85
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.95 E-value=0.019 Score=51.71 Aligned_cols=110 Identities=17% Similarity=0.285 Sum_probs=71.0
Q ss_pred ceEEEEeeccccccccc--cCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCC-----C
Q 017858 237 EKIEGICLDMSKIKEIR--LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKS-----L 307 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~-----l 307 (365)
+.++.+.+..+.++.-. .....|..+++|++||+..|.+.-.. .+ .+.. ..+++|+.|++++|.++. +
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg--s~-~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG--SV-ALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH--HH-HHHHHhcccchheeecccccccccccHHHH
Confidence 34555555555544332 23456789999999999544432111 01 2222 677889999999987752 2
Q ss_pred CCCC--CCCCceEEeccCCcccc-----cccccccCccCceeccccccc
Q 017858 308 PSNL--SAKKLVLVEVPDSDIER-----LWHCVKHYSKLNQIIHAACNM 349 (365)
Q Consensus 308 p~~~--~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~ 349 (365)
-..+ +.++|++|++.+|.++. +-..+...+.|..|++++|..
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2333 27799999999997632 334456688999999999983
No 86
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.86 E-value=0.83 Score=44.58 Aligned_cols=93 Identities=15% Similarity=0.225 Sum_probs=62.9
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEE-EEeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRII-ITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+++.. ..++.+...+.+..+.+.+| +||+.+.+.... .....+++.+++.++..+.+.+.+.......+
T Consensus 129 ~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie 208 (507)
T PRK06645 129 HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD 208 (507)
T ss_pred cEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 457999999964 45777777666545566655 455555554433 22357999999999999999988854433222
Q ss_pred cHHHHHHHHHHHcCCCchh
Q 017858 78 GYEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPla 96 (365)
.+....|++.++|.+.-
T Consensus 209 --~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 209 --IEALRIIAYKSEGSARD 225 (507)
T ss_pred --HHHHHHHHHHcCCCHHH
Confidence 25567789999987633
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.84 E-value=3 Score=38.68 Aligned_cols=95 Identities=13% Similarity=0.136 Sum_probs=61.8
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|++... ...+.+...+.+...++.+|++|.+.. +.... .....+++.++++++..+.+...+-......+
T Consensus 119 ~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~- 197 (355)
T TIGR02397 119 KVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE- 197 (355)
T ss_pred eEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 47899998754 446666666654445666667765443 22222 22247889999999999999887643332222
Q ss_pred HHHHHHHHHHHcCCCchhHHH
Q 017858 79 YEELSCKVMKYAQGVPLALKV 99 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~ 99 (365)
++.+..+++.++|.|..+..
T Consensus 198 -~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 198 -DEALELIARAADGSLRDALS 217 (355)
T ss_pred -HHHHHHHHHHcCCChHHHHH
Confidence 36678889999998865543
No 88
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.59 E-value=3.5 Score=38.60 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=61.2
Q ss_pred EEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|++.... .++.+...+.+...+.++|++|.+. .+.... +-...+++.+++.++..+.+...+.......+
T Consensus 121 kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~- 199 (363)
T PRK14961 121 KVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD- 199 (363)
T ss_pred eEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 489999998654 4667776665545566677666543 332222 12357999999999999988887644332222
Q ss_pred HHHHHHHHHHHcCCCchh
Q 017858 79 YEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPla 96 (365)
++.+..|++.++|.|..
T Consensus 200 -~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 200 -EYALKLIAYHAHGSMRD 216 (363)
T ss_pred -HHHHHHHHHHcCCCHHH
Confidence 25677899999998753
No 89
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.46 E-value=3.3 Score=39.51 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=58.8
Q ss_pred CEEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEE--EeCchhHH--Hh-cCccceEEeCCCCHHHHHHHHHHhhhcCC
Q 017858 1 MKVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIII--TTRNKQVL--RN-WGVRKIYEMKALEYHHAIRLFSRHAFKQN 73 (365)
Q Consensus 1 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv--TTR~~~v~--~~-~~~~~~~~l~~L~~~e~~~L~~~~~~~~~ 73 (365)
++.+|++|+++.. .+.+.+...+. .|..+++ ||.+.... .. ..-...+.+.+++.++...++.+.+....
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~ 168 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKE 168 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh
Confidence 3568999999854 34556665543 2444444 34443211 11 11125799999999999999988653311
Q ss_pred CCC-ccHHHHHHHHHHHcCCCchhHHH
Q 017858 74 HPD-VGYEELSCKVMKYAQGVPLALKV 99 (365)
Q Consensus 74 ~~~-~~~~~~~~~i~~~c~glPlai~~ 99 (365)
... .-..+....|++.|+|-+..+..
T Consensus 169 ~~~i~i~~~al~~l~~~s~Gd~R~aln 195 (413)
T PRK13342 169 RGLVELDDEALDALARLANGDARRALN 195 (413)
T ss_pred cCCCCCCHHHHHHHHHhCCCCHHHHHH
Confidence 111 22246677889999999866543
No 90
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.42 E-value=2.1 Score=41.95 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=62.3
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCc-hhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+++.. +.++.+...+.+...+..+|++|.. ..+.... .....+++.+++.++..+.+.+.+-......
T Consensus 117 ~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i- 195 (504)
T PRK14963 117 RKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA- 195 (504)
T ss_pred CeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 348999999854 4477777766554455555555543 3332222 2235899999999999999998874433222
Q ss_pred cHHHHHHHHHHHcCCCchhH
Q 017858 78 GYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai 97 (365)
..+.+..|++.++|.+--+
T Consensus 196 -~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 196 -EPEALQLVARLADGAMRDA 214 (504)
T ss_pred -CHHHHHHHHHHcCCCHHHH
Confidence 2356788999999988543
No 91
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.32 E-value=0.44 Score=36.82 Aligned_cols=93 Identities=16% Similarity=0.291 Sum_probs=52.7
Q ss_pred cCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccc
Q 017858 254 LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIER 328 (365)
Q Consensus 254 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~ 328 (365)
++...|.++.+|+.+.+ .+. ++.++. ..+.+|+.+.+.++ +..++... ++.+|+.+.+.. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~-~~~--------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITF-PNT--------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp E-TTTTTT-TT--EEEE-TST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred ECHHHHhCCCCCCEEEE-CCC--------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccc
Confidence 45667888889999888 333 445665 55568889988775 77887665 376899999965 5655
Q ss_pred ccc-ccccCccCceecccccccccccCCC--CCCC
Q 017858 329 LWH-CVKHYSKLNQIIHAACNMLTAKIPN--PTLM 360 (365)
Q Consensus 329 lp~-~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l 360 (365)
++. .+..+++|+.+++..+ +. .++. |...
T Consensus 72 i~~~~F~~~~~l~~i~~~~~--~~-~i~~~~f~~~ 103 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN--IT-EIGSSSFSNC 103 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT---B-EEHTTTTTT-
T ss_pred cccccccccccccccccCcc--cc-EEchhhhcCC
Confidence 644 3466888999888654 34 4443 5544
No 92
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.16 E-value=0.1 Score=47.15 Aligned_cols=116 Identities=12% Similarity=0.152 Sum_probs=75.2
Q ss_pred HhhcCCCceEEEEeecccccccc--ccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCC
Q 017858 230 LTYNTGTEKIEGICLDMSKIKEI--RLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLK 305 (365)
Q Consensus 230 ~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~ 305 (365)
.......+.++.+....+....- ......|...+.|+.+.++.|..... .++-+-. ..+++|+.|++++|-++
T Consensus 150 ~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e---G~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 150 NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE---GVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCc---hhHHHHHHHHhCCcceeeecccchhh
Confidence 33445567788887766655432 12234577778999999976652110 0101111 66799999999999875
Q ss_pred -----CCCCCCC-CCCceEEeccCCccc-----cccccc-ccCccCceecccccc
Q 017858 306 -----SLPSNLS-AKKLVLVEVPDSDIE-----RLWHCV-KHYSKLNQIIHAACN 348 (365)
Q Consensus 306 -----~lp~~~~-l~~L~~L~l~~~~l~-----~lp~~i-~~l~~L~~L~l~~~~ 348 (365)
.+-..++ +++|+.|++++|.+. .+-+.+ ...++|+.|.+.+|.
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 2333343 789999999999763 233333 447899999999986
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.79 E-value=0.89 Score=39.69 Aligned_cols=92 Identities=16% Similarity=0.237 Sum_probs=54.4
Q ss_pred EEEEeCCCCh---HhHHHHH-ccCCCC-CCC-cEEEEEeCchh---------HHHhcCccceEEeCCCCHHHHHHHHHHh
Q 017858 4 LIVFDDVTCF---SQIESLI-GSLDWL-TPV-SRIIITTRNKQ---------VLRNWGVRKIYEMKALEYHHAIRLFSRH 68 (365)
Q Consensus 4 LlVlDdv~~~---~~~~~l~-~~~~~~-~~g-s~ilvTTR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L~~~~ 68 (365)
+|++||+... ..|+... ..+... ..| .++|+||+... +...+....++++++++.++-.+++.++
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 7899999643 2343222 222110 123 46999998652 2333444468999999999999998886
Q ss_pred hhcCCCCCccHHHHHHHHHHHcCCCchhH
Q 017858 69 AFKQNHPDVGYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~~~c~glPlai 97 (365)
+....-. -.+++..-|++.+.|-.-++
T Consensus 180 a~~~~~~--l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 180 ARLRGFE--LPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHcCCC--CCHHHHHHHHHhhcCCHHHH
Confidence 6432221 12356666777776554433
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.79 E-value=0.098 Score=28.12 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.1
Q ss_pred CCcccEEEEeCCCCCCCCCCC
Q 017858 291 FAEVKYLHWYGYPLKSLPSNL 311 (365)
Q Consensus 291 l~~L~~L~l~~~~i~~lp~~~ 311 (365)
+++|++|++++|.++.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467889999999999988654
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.79 E-value=0.098 Score=28.12 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.1
Q ss_pred CCcccEEEEeCCCCCCCCCCC
Q 017858 291 FAEVKYLHWYGYPLKSLPSNL 311 (365)
Q Consensus 291 l~~L~~L~l~~~~i~~lp~~~ 311 (365)
+++|++|++++|.++.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467889999999999988654
No 96
>PF14516 AAA_35: AAA-like domain
Probab=91.26 E-value=9.9 Score=35.05 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=42.5
Q ss_pred ceEEeCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCchhHHHHhHhhccc
Q 017858 49 KIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKR 107 (365)
Q Consensus 49 ~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~ 107 (365)
..++|++++.+|..+|..+.-..- . ....++|...+||+|.-+..++..+...
T Consensus 194 ~~i~L~~Ft~~ev~~L~~~~~~~~---~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 194 QPIELPDFTPEEVQELAQRYGLEF---S---QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cceeCCCCCHHHHHHHHHhhhccC---C---HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 478999999999999988764221 1 1338899999999999999999988764
No 97
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.21 E-value=4 Score=37.13 Aligned_cols=92 Identities=9% Similarity=0.145 Sum_probs=57.3
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++++|++... +....+...+......+++|+++... .+.... .....+++.+++.++....+...+......-+
T Consensus 104 ~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~- 182 (319)
T PRK00440 104 KIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEIT- 182 (319)
T ss_pred eEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 47899998744 33445554444334556777776432 121111 11237899999999999998887744332222
Q ss_pred HHHHHHHHHHHcCCCchh
Q 017858 79 YEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPla 96 (365)
++.+..+++.++|.+.-
T Consensus 183 -~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 183 -DDALEAIYYVSEGDMRK 199 (319)
T ss_pred -HHHHHHHHHHcCCCHHH
Confidence 35678889999988754
No 98
>PRK06620 hypothetical protein; Validated
Probab=91.19 E-value=1.5 Score=37.58 Aligned_cols=87 Identities=6% Similarity=0.022 Sum_probs=50.9
Q ss_pred EEEEeCCCChHh--HHHHHccCCCCCCCcEEEEEeCchhH-------HHhcCccceEEeCCCCHHHHHHHHHHhhhcCCC
Q 017858 4 LIVFDDVTCFSQ--IESLIGSLDWLTPVSRIIITTRNKQV-------LRNWGVRKIYEMKALEYHHAIRLFSRHAFKQNH 74 (365)
Q Consensus 4 LlVlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTTR~~~v-------~~~~~~~~~~~l~~L~~~e~~~L~~~~~~~~~~ 74 (365)
++++||+...++ +-.+...+. ..|..||+|++...- ...+...-++++++++.++-..++.+.+....-
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 688999975432 222222222 346689999985532 222333447999999999988888777632211
Q ss_pred CCccHHHHHHHHHHHcCCCc
Q 017858 75 PDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 75 ~~~~~~~~~~~i~~~c~glP 94 (365)
.- .+++..-|++.+.|--
T Consensus 166 ~l--~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 166 TI--SRQIIDFLLVNLPREY 183 (214)
T ss_pred CC--CHHHHHHHHHHccCCH
Confidence 11 1255556666665443
No 99
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.86 E-value=12 Score=34.92 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=94.9
Q ss_pred EEEEEEeCCCChH-----hHHHHHccC--CCC-CCCcEEEEEeCchhHHHhcC------c-cceEEeCCCCHHHHHHHHH
Q 017858 2 KVLIVFDDVTCFS-----QIESLIGSL--DWL-TPVSRIIITTRNKQVLRNWG------V-RKIYEMKALEYHHAIRLFS 66 (365)
Q Consensus 2 r~LlVlDdv~~~~-----~~~~l~~~~--~~~-~~gs~ilvTTR~~~v~~~~~------~-~~~~~l~~L~~~e~~~L~~ 66 (365)
+++||||+++... .+..+.... ... +....+|++|.......... . ...+.+++++.+|..+++.
T Consensus 130 ~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~ 209 (365)
T TIGR02928 130 SLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILE 209 (365)
T ss_pred eEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHH
Confidence 5789999998661 133333221 111 12334555665443322211 1 2468999999999999999
Q ss_pred Hhhh---cCCCCCccHHHHHHHHHHHcCCCc-hhHHHHhHhh--c---c---cCHHHHHHHHHHHhhcCcccHHHHHHHH
Q 017858 67 RHAF---KQNHPDVGYEELSCKVMKYAQGVP-LALKVLGCFL--H---K---REKEVWESATDKLQRILYPSILEVLKIS 134 (365)
Q Consensus 67 ~~~~---~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l--~---~---~~~~~w~~~~~~l~~~~~~~~~~~l~~s 134 (365)
.++. ......++.-+.+..++....|.| .|+.++-.+. . + -+.+....+.+.+. .....-.
T Consensus 210 ~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~ 282 (365)
T TIGR02928 210 NRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLEL 282 (365)
T ss_pred HHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHH
Confidence 8863 112223333345556677777887 4433322221 1 1 14455555544432 2334556
Q ss_pred HhcCChhhhhhhhhhcccc--C--CcCHHHHHHHH----HHcCCCc------ccchhHHhhcCceeEcc
Q 017858 135 YDSLDDKEKNIFLDVACFF--Q--GEDVDLVMKFF----NASGFYP------EIGMSVLVDKSLIAIDS 189 (365)
Q Consensus 135 y~~L~~~~~~~~~~ls~fp--~--~~~~~~l~~~w----~~~~~~~------~~~l~~L~~~sLl~~~~ 189 (365)
...||.+++..+..++..- . .+...++...+ ...|... ..++..|...|++....
T Consensus 283 i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 283 IRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 7788888887666654221 1 13333333321 1112111 23477788888887653
No 100
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.78 E-value=4.8 Score=41.16 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=64.4
Q ss_pred EEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|+++... .++.++..+-+...+.++|+||.+.. +...+ .-...+++.+++.++..+.+.+.+.......+
T Consensus 121 KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id- 199 (830)
T PRK07003 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE- 199 (830)
T ss_pred eEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC-
Confidence 378899999654 37777776655456777787777653 22111 11257999999999999999887754433222
Q ss_pred HHHHHHHHHHHcCCCc-hhHHH
Q 017858 79 YEELSCKVMKYAQGVP-LALKV 99 (365)
Q Consensus 79 ~~~~~~~i~~~c~glP-lai~~ 99 (365)
.+....|++.++|.. -|+.+
T Consensus 200 -~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 200 -PQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred -HHHHHHHHHHcCCCHHHHHHH
Confidence 366788899998855 45554
No 101
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.70 E-value=0.0072 Score=51.50 Aligned_cols=85 Identities=9% Similarity=0.082 Sum_probs=65.1
Q ss_pred ccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcccccccc
Q 017858 256 PSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDIERLWHC 332 (365)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l~~lp~~ 332 (365)
-..+..+...++||++.|. +..+-. ..++.+..|+++.|.+..+|..++ +..+..+++..|..+.+|.+
T Consensus 35 v~ei~~~kr~tvld~~s~r--------~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s 106 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNR--------LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKS 106 (326)
T ss_pred hhhhhccceeeeehhhhhH--------HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcc
Confidence 3445677788899986554 222333 445667778888888889998885 88888888888888899999
Q ss_pred cccCccCceecccccc
Q 017858 333 VKHYSKLNQIIHAACN 348 (365)
Q Consensus 333 i~~l~~L~~L~l~~~~ 348 (365)
.+.+++++++++-+|.
T Consensus 107 ~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTE 122 (326)
T ss_pred ccccCCcchhhhccCc
Confidence 9999999998887776
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.48 E-value=2.4 Score=39.46 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=57.9
Q ss_pred EEEEEEeCCCChH--hHHHHHccCCCCCCCcE-EEEEeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSR-IIITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~-ilvTTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+++..+ ..+.+...+.....+.. |++|++-..+.... .-...+++.+++.++..+.+........
T Consensus 142 ~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---- 217 (351)
T PRK09112 142 WRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---- 217 (351)
T ss_pred ceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----
Confidence 3479999998543 35555555543333444 44454443333222 1225899999999999999987432111
Q ss_pred cHHHHHHHHHHHcCCCchhHH
Q 017858 78 GYEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~ 98 (365)
-..+.+..+++.++|.|....
T Consensus 218 ~~~~~~~~i~~~s~G~pr~Al 238 (351)
T PRK09112 218 SDGEITEALLQRSKGSVRKAL 238 (351)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 113457789999999997543
No 103
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.94 E-value=2.3 Score=39.05 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=57.2
Q ss_pred EEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-+||+||+.... ..+.+...+......+++|+||.... +.... .....+++.+++.++....+.+.+......-
T Consensus 127 ~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~-- 204 (337)
T PRK12402 127 KTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY-- 204 (337)
T ss_pred cEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC--
Confidence 379999997542 24444443333344567877775432 22211 1224788999999999999988764333221
Q ss_pred HHHHHHHHHHHcCCCchhH
Q 017858 79 YEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai 97 (365)
..+.+..+++.++|.+-.+
T Consensus 205 ~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 205 DDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 2366788888888876444
No 104
>PRK05642 DNA replication initiation factor; Validated
Probab=89.72 E-value=2.2 Score=37.14 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=54.3
Q ss_pred EEEEeCCCCh---HhHHH-HHccCCC-CCCCcEEEEEeCchhH---------HHhcCccceEEeCCCCHHHHHHHHHHhh
Q 017858 4 LIVFDDVTCF---SQIES-LIGSLDW-LTPVSRIIITTRNKQV---------LRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 4 LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~ilvTTR~~~v---------~~~~~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
+||+||+... ..|+. +...+.. ...|..||+||+...- ...+....++.+++++.++-.+.+.+++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6889999632 23432 3333321 1346679999886432 1112223578999999999999998766
Q ss_pred hcCCCCCccHHHHHHHHHHHcCCCchhH
Q 017858 70 FKQNHPDVGYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPlai 97 (365)
....-.-+ ++...-|++.+.|-.-++
T Consensus 180 ~~~~~~l~--~ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 180 SRRGLHLT--DEVGHFILTRGTRSMSAL 205 (234)
T ss_pred HHcCCCCC--HHHHHHHHHhcCCCHHHH
Confidence 43322111 356666777776665443
No 105
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.54 E-value=1.7 Score=41.89 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=61.1
Q ss_pred EEEEeCCCChH---h-HHHHHccCCC-CCCCcEEEEEeCchh---------HHHhcCccceEEeCCCCHHHHHHHHHHhh
Q 017858 4 LIVFDDVTCFS---Q-IESLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 4 LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
+||+||+.... . .+.+...+.. ...|..||+|+.... +...+...-.+.+++++.++-.+++.+++
T Consensus 209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 78999996331 2 2333332221 123456888876542 22223334578899999999999999987
Q ss_pred hcCCCCCccHHHHHHHHHHHcCCCchhHHHHh
Q 017858 70 FKQNHPDVGYEELSCKVMKYAQGVPLALKVLG 101 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 101 (365)
-.......-.++...-|++.++|.|-.+.-+-
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 43221112234778889999999997765443
No 106
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=89.50 E-value=1.3 Score=38.10 Aligned_cols=89 Identities=12% Similarity=0.180 Sum_probs=47.5
Q ss_pred EEEEeCCCChH---hHH-HHHccCCC-CCCCcEEEEEeCchhH---------HHhcCccceEEeCCCCHHHHHHHHHHhh
Q 017858 4 LIVFDDVTCFS---QIE-SLIGSLDW-LTPVSRIIITTRNKQV---------LRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 4 LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~ilvTTR~~~v---------~~~~~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
+|++||+.... .|+ .+...+.. ...|.+||+|++...- ...+...-.+++++.+.++-.+++.+.+
T Consensus 100 lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 100 LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH
T ss_pred EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 68999997532 222 22222211 1346689999965521 1222334589999999999999999988
Q ss_pred hcCCCCCccHHHHHHHHHHHcCCCc
Q 017858 70 FKQNHPDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glP 94 (365)
......-+ ++++.-|++.+.+-.
T Consensus 180 ~~~~~~l~--~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 180 KERGIELP--EEVIEYLARRFRRDV 202 (219)
T ss_dssp HHTT--S---HHHHHHHHHHTTSSH
T ss_pred HHhCCCCc--HHHHHHHHHhhcCCH
Confidence 54333222 245555655554443
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=89.04 E-value=2.8 Score=36.20 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=54.9
Q ss_pred EEEEeCCCChH--hHHHHHccCCC-CCCCc-EEEEEeCchhHHH--------hcCccceEEeCCCCHHHHHHHHHHhhhc
Q 017858 4 LIVFDDVTCFS--QIESLIGSLDW-LTPVS-RIIITTRNKQVLR--------NWGVRKIYEMKALEYHHAIRLFSRHAFK 71 (365)
Q Consensus 4 LlVlDdv~~~~--~~~~l~~~~~~-~~~gs-~ilvTTR~~~v~~--------~~~~~~~~~l~~L~~~e~~~L~~~~~~~ 71 (365)
+||+||+.... .-..+...+.. ...+. .+|+|++...... .+.....+++.++++++-..++.+.+-.
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 68999997432 22233332221 12233 4777776543221 2222358899999998877777665422
Q ss_pred CCCCCccHHHHHHHHHHHcCCCchhHHHHhHhh
Q 017858 72 QNHPDVGYEELSCKVMKYAQGVPLALKVLGCFL 104 (365)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 104 (365)
.....+ ++....+++.+.|.+..+..+-..+
T Consensus 173 ~~v~l~--~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 173 RGLQLA--DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCCCCC--HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222122 2566777778888887765544433
No 108
>PLN03025 replication factor C subunit; Provisional
Probab=87.29 E-value=3 Score=38.23 Aligned_cols=91 Identities=11% Similarity=0.171 Sum_probs=55.3
Q ss_pred EEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|+++... ..+.+...+......+++++++... .+.... .-...+++++++.++..+.+...+-.....-+
T Consensus 101 kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~- 179 (319)
T PLN03025 101 KIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV- 179 (319)
T ss_pred EEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 489999998543 2333333332223456677766443 222111 11247899999999999999887744333222
Q ss_pred HHHHHHHHHHHcCCCch
Q 017858 79 YEELSCKVMKYAQGVPL 95 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPl 95 (365)
++....|++.++|-.-
T Consensus 180 -~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 180 -PEGLEAIIFTADGDMR 195 (319)
T ss_pred -HHHHHHHHHHcCCCHH
Confidence 3567888889988763
No 109
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=86.88 E-value=2.4 Score=40.20 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=61.6
Q ss_pred CEEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCchhHHHhc------CccceEEeCCCCHHHHHHHHHHhhhcCCC
Q 017858 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNW------GVRKIYEMKALEYHHAIRLFSRHAFKQNH 74 (365)
Q Consensus 1 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~------~~~~~~~l~~L~~~e~~~L~~~~~~~~~~ 74 (365)
++..|+||-|.....|......+.+.++. +|++|+-+......- |-...+++-||+-.|-..+--..+
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----- 167 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----- 167 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-----
Confidence 45789999999999999999988877766 899988877553321 223578999999999876543000
Q ss_pred CCccHHHHHHHHHHHcCCCchhHHH
Q 017858 75 PDVGYEELSCKVMKYAQGVPLALKV 99 (365)
Q Consensus 75 ~~~~~~~~~~~i~~~c~glPlai~~ 99 (365)
..... ...-+---..||+|-++..
T Consensus 168 ~~~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 EPSKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred chhHH-HHHHHHHHHhCCCcHHHhC
Confidence 00011 1122233456999987654
No 110
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.79 E-value=0.43 Score=25.69 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=9.7
Q ss_pred CceEEeccCCccccccc
Q 017858 315 KLVLVEVPDSDIERLWH 331 (365)
Q Consensus 315 ~L~~L~l~~~~l~~lp~ 331 (365)
+|++|++++|++..+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555566665555554
No 111
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.57 E-value=0.085 Score=46.85 Aligned_cols=57 Identities=19% Similarity=0.366 Sum_probs=34.1
Q ss_pred CcccEEEEeCCC--C--CCCCCCC-CCCCceEEeccCC-ccc-ccccccccCccCceecccccc
Q 017858 292 AEVKYLHWYGYP--L--KSLPSNL-SAKKLVLVEVPDS-DIE-RLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 292 ~~L~~L~l~~~~--i--~~lp~~~-~l~~L~~L~l~~~-~l~-~lp~~i~~l~~L~~L~l~~~~ 348 (365)
.+|..|+++|+. + ..+..-. ..++|..||||.| .+. ..-..+.+++.|++|.++.|+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 445566666654 1 1111111 2678888888887 442 233356677888888888887
No 112
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=86.36 E-value=5.1 Score=36.89 Aligned_cols=89 Identities=10% Similarity=0.159 Sum_probs=57.9
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCccH
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~ 79 (365)
.+|+|+++.. +..+.+...+-+-..++.+|+||.+.. +.... .-...+.+.+++.+++.+.+...... . .
T Consensus 109 v~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~--~----~ 182 (328)
T PRK05707 109 VVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE--S----D 182 (328)
T ss_pred EEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc--C----C
Confidence 4567999854 446666666554445677777777663 33222 12357999999999999988765311 1 1
Q ss_pred HHHHHHHHHHcCCCchhHH
Q 017858 80 EELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 80 ~~~~~~i~~~c~glPlai~ 98 (365)
.+.+..++..++|.|....
T Consensus 183 ~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 183 ERERIELLTLAGGSPLRAL 201 (328)
T ss_pred hHHHHHHHHHcCCCHHHHH
Confidence 2445677889999996443
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.25 E-value=4.7 Score=40.31 Aligned_cols=101 Identities=10% Similarity=0.106 Sum_probs=64.8
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCc-hhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-+||+|++... +.++.+...+.+......+|++|.+ ..+...+ .-...+++.+++.++..+.+...+.......+
T Consensus 120 ~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id 199 (624)
T PRK14959 120 YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD 199 (624)
T ss_pred ceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 458999999854 4466666665443345556665544 4443322 12247899999999999999887644332222
Q ss_pred cHHHHHHHHHHHcCCCc-hhHHHHhHhh
Q 017858 78 GYEELSCKVMKYAQGVP-LALKVLGCFL 104 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glP-lai~~~~~~l 104 (365)
.+.+..|++.++|-+ .|+..+...+
T Consensus 200 --~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 200 --PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 256778889998854 6777766544
No 114
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.69 E-value=6 Score=39.86 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=62.0
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchh-HHHh-cCccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~-~~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+|... ...+.+...+.+...+.++|+||.+.. +... ..-...+++.+++.++..+.+.+.+.......+
T Consensus 119 ~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id 198 (702)
T PRK14960 119 FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD 198 (702)
T ss_pred cEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 347899999855 456667666654445667777776542 2211 122358999999999999999887744433222
Q ss_pred cHHHHHHHHHHHcCCCchhH
Q 017858 78 GYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai 97 (365)
.+....|++.++|-+..+
T Consensus 199 --~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 199 --QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred --HHHHHHHHHHcCCCHHHH
Confidence 255678889998877433
No 115
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=85.42 E-value=3.2 Score=38.75 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=59.0
Q ss_pred CEEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEE--EeCchhHHHh---cCccceEEeCCCCHHHHHHHHHHhhhcCC
Q 017858 1 MKVLIVFDDVTC--FSQIESLIGSLDWLTPVSRIII--TTRNKQVLRN---WGVRKIYEMKALEYHHAIRLFSRHAFKQN 73 (365)
Q Consensus 1 kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilv--TTR~~~v~~~---~~~~~~~~l~~L~~~e~~~L~~~~~~~~~ 73 (365)
||.+|.+|.|.. ..+-+.|.+. -..|.-|+| ||-++...-. ..-..++.+++|+.+|-.+++.+.+....
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 578999999984 3445555554 356776776 6666642111 12246899999999999999999543222
Q ss_pred -CCC---c-cHHHHHHHHHHHcCCCchh
Q 017858 74 -HPD---V-GYEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 74 -~~~---~-~~~~~~~~i~~~c~glPla 96 (365)
... . -..+...-++..++|---+
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 111 1 1234566778888887544
No 116
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.25 E-value=5.1 Score=40.25 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=61.7
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcE-EEEEeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSR-IIITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~-ilvTTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
.-++|+|+++.. +.++.++..+-+-..+++ |++||....+...+ .-...+++..++.++..+.+.+.+.......+
T Consensus 125 ~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d 204 (700)
T PRK12323 125 FKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE 204 (700)
T ss_pred ceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC
Confidence 347999999865 457777776654444555 45555544444332 11257999999999999999887643332222
Q ss_pred cHHHHHHHHHHHcCCCchhH
Q 017858 78 GYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai 97 (365)
.+....|++.++|.|...
T Consensus 205 --~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 205 --VNALRLLAQAAQGSMRDA 222 (700)
T ss_pred --HHHHHHHHHHcCCCHHHH
Confidence 245678899999988543
No 117
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.95 E-value=7.3 Score=38.49 Aligned_cols=99 Identities=16% Similarity=0.097 Sum_probs=62.2
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEE-EEeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRII-ITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|++... +.++.+...+-+....+++| +||....+...+ .-...+++.+++.++....+.+.+-......
T Consensus 120 ~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~- 198 (546)
T PRK14957 120 YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS- 198 (546)
T ss_pred cEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 458999999854 44667776665544555555 455444443222 2235899999999999888887654332222
Q ss_pred cHHHHHHHHHHHcCCCc-hhHHHHhH
Q 017858 78 GYEELSCKVMKYAQGVP-LALKVLGC 102 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glP-lai~~~~~ 102 (365)
.+.....|++.++|-+ .|+..+-.
T Consensus 199 -e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 199 -DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred -CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2355678899999866 45554433
No 118
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.92 E-value=0.041 Score=47.07 Aligned_cols=74 Identities=22% Similarity=0.228 Sum_probs=63.5
Q ss_pred CCCCcccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcccccccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 289 PGFAEVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
..+...+.|+++.|++..+-..++ ++.|..|+++.|.+..+|...+.+..++++++..|. .. ..|. +++++.++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HS-QQPKSQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hh-hCCccccccCCcc
Confidence 556778899999999888887786 899999999999999999999999999999988776 66 7886 88887664
No 119
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.69 E-value=33 Score=33.32 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=59.9
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEE-EEeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRII-ITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|+|... +.++.+...+-+......+| .||....+.... .-...|.+.+++.++..+.+.+.+-......+
T Consensus 123 KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e- 201 (484)
T PRK14956 123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD- 201 (484)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 47999999854 45777777665433445444 455444443332 22247999999999999888887644333222
Q ss_pred HHHHHHHHHHHcCCCch
Q 017858 79 YEELSCKVMKYAQGVPL 95 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPl 95 (365)
.+....|++.++|.+.
T Consensus 202 -~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 202 -QEGLFWIAKKGDGSVR 217 (484)
T ss_pred -HHHHHHHHHHcCChHH
Confidence 3567889999999884
No 120
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=84.49 E-value=7.6 Score=36.74 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=57.1
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|+++.. ...+.+...+.+..++..+|++|.+. .+...+ .-...+.+.+++.++..+.+.+... . +
T Consensus 119 kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~--~- 192 (394)
T PRK07940 119 RIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V--D- 192 (394)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C--C-
Confidence 37888999854 34555665554444566666666554 333332 2235899999999999988875431 1 1
Q ss_pred HHHHHHHHHHHcCCCchhH
Q 017858 79 YEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai 97 (365)
.+.+..++..++|.|...
T Consensus 193 -~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 193 -PETARRAARASQGHIGRA 210 (394)
T ss_pred -HHHHHHHHHHcCCCHHHH
Confidence 255778999999999643
No 121
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.37 E-value=8.1 Score=37.52 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=61.7
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCc-hhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+++.. +..+.+...+.+......+|++|.+ ..+.... .....+++.+++.++....+.+.+......-+
T Consensus 118 ~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~ 197 (472)
T PRK14962 118 YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID 197 (472)
T ss_pred eEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC
Confidence 458999999854 3456666655443344554444443 3333322 22357899999999999988887743332222
Q ss_pred cHHHHHHHHHHHcC-CCchhHHHHhHhh
Q 017858 78 GYEELSCKVMKYAQ-GVPLALKVLGCFL 104 (365)
Q Consensus 78 ~~~~~~~~i~~~c~-glPlai~~~~~~l 104 (365)
++....|++.++ +++.|+..+-.+.
T Consensus 198 --~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 198 --REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 255677888775 5567776665543
No 122
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.11 E-value=3.4 Score=39.18 Aligned_cols=92 Identities=11% Similarity=0.113 Sum_probs=60.4
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe-CchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|++... +.++.+...+.+..+.+.+|++| +...+.... .....+++.+++.++..+.+...+-.....-
T Consensus 128 ~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i- 206 (397)
T PRK14955 128 YRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV- 206 (397)
T ss_pred eEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 447899999854 45777777766555566666555 444443322 1124789999999999888887763322211
Q ss_pred cHHHHHHHHHHHcCCCch
Q 017858 78 GYEELSCKVMKYAQGVPL 95 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPl 95 (365)
.++.+..|++.++|.+-
T Consensus 207 -~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 207 -DADALQLIGRKAQGSMR 223 (397)
T ss_pred -CHHHHHHHHHHcCCCHH
Confidence 23668889999999774
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.15 E-value=7.8 Score=39.02 Aligned_cols=91 Identities=14% Similarity=0.216 Sum_probs=59.6
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEE-EeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIII-TTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-TTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
=++|+|++... +.++.+...+.+-..++.+|+ ||+...+.... .-...+++.+++.++....+.+.+-......+
T Consensus 123 KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~- 201 (614)
T PRK14971 123 KIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE- 201 (614)
T ss_pred EEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 37899999854 346666666654445566555 54545444332 22358999999999999999887644332222
Q ss_pred HHHHHHHHHHHcCCCch
Q 017858 79 YEELSCKVMKYAQGVPL 95 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPl 95 (365)
++.+..|++.+||-.-
T Consensus 202 -~~al~~La~~s~gdlr 217 (614)
T PRK14971 202 -PEALNVIAQKADGGMR 217 (614)
T ss_pred -HHHHHHHHHHcCCCHH
Confidence 2567889999998664
No 124
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=82.91 E-value=13 Score=36.57 Aligned_cols=94 Identities=12% Similarity=0.139 Sum_probs=60.5
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|++... +..+.+...+-+..+.+++|++|.+. .+.... .-...+++.+++.++....+...+-......+
T Consensus 118 ~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~ 197 (535)
T PRK08451 118 FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE 197 (535)
T ss_pred eEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 347899999854 34566665554444567767666553 222111 11358999999999999988877644332222
Q ss_pred cHHHHHHHHHHHcCCCchhH
Q 017858 78 GYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai 97 (365)
++.+..|++.++|.+.-+
T Consensus 198 --~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 198 --PEALEILARSGNGSLRDT 215 (535)
T ss_pred --HHHHHHHHHHcCCcHHHH
Confidence 366788999999988444
No 125
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=82.87 E-value=34 Score=34.40 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=60.7
Q ss_pred EEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEe-CchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|++.... ..+.+...+.+-..++++|++| ....+...+ .-...+++..++.++....+.+.+-......+
T Consensus 134 KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~- 212 (598)
T PRK09111 134 KVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE- 212 (598)
T ss_pred EEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 478999997543 4666666554444566665544 444443332 22357899999999999999887743332222
Q ss_pred HHHHHHHHHHHcCCCchhHH
Q 017858 79 YEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (365)
.+....|++.++|-+.-+.
T Consensus 213 -~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 213 -DEALALIARAAEGSVRDGL 231 (598)
T ss_pred -HHHHHHHHHHcCCCHHHHH
Confidence 2567788999999875443
No 126
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=82.68 E-value=7.2 Score=39.53 Aligned_cols=94 Identities=10% Similarity=0.074 Sum_probs=59.1
Q ss_pred EEEEEEeCCCChHh--HHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCFSQ--IESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|++..... .+.+...+.+...++++|++|.+. .+.... +-...+++.+++.++..+.+.+.+-......+
T Consensus 120 ~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id 199 (709)
T PRK08691 120 YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE 199 (709)
T ss_pred cEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 34899999986543 555555554333456666666544 222211 11236788899999999999887744433222
Q ss_pred cHHHHHHHHHHHcCCCchhH
Q 017858 78 GYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai 97 (365)
......|++.++|-+.-+
T Consensus 200 --~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 200 --PPALQLLGRAAAGSMRDA 217 (709)
T ss_pred --HHHHHHHHHHhCCCHHHH
Confidence 256788999998887433
No 127
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.24 E-value=10 Score=36.91 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=60.7
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe-CchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
=++|+|++... +..+.+...+.+..+++++|++| ..+.+...+ .-...+++.+++.++..+.+.+.+......-+
T Consensus 118 KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~- 196 (491)
T PRK14964 118 KVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD- 196 (491)
T ss_pred eEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC-
Confidence 47899999854 34666666665445566666555 334443332 22357999999999999999888754433222
Q ss_pred HHHHHHHHHHHcCCCchh
Q 017858 79 YEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPla 96 (365)
++.+..|++.++|-+..
T Consensus 197 -~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 197 -EESLKLIAENSSGSMRN 213 (491)
T ss_pred -HHHHHHHHHHcCCCHHH
Confidence 25567889999887753
No 128
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.91 E-value=1.1 Score=24.19 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=9.9
Q ss_pred CCceEEeccCCccccc
Q 017858 314 KKLVLVEVPDSDIERL 329 (365)
Q Consensus 314 ~~L~~L~l~~~~l~~l 329 (365)
.+|+.|++++|+|..+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4666666666666544
No 129
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.87 E-value=8.7 Score=35.92 Aligned_cols=92 Identities=12% Similarity=0.201 Sum_probs=56.8
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe-CchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|++... ..++.+...+.+....+.+|++| ....+.... .....++..++++++....+...+......-+
T Consensus 109 ~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~ 188 (367)
T PRK14970 109 YKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE 188 (367)
T ss_pred cEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC
Confidence 347999998744 33666655544333455555555 333332221 22347899999999999988887744332122
Q ss_pred cHHHHHHHHHHHcCCCch
Q 017858 78 GYEELSCKVMKYAQGVPL 95 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPl 95 (365)
++.+..+++.++|-+-
T Consensus 189 --~~al~~l~~~~~gdlr 204 (367)
T PRK14970 189 --DDALHIIAQKADGALR 204 (367)
T ss_pred --HHHHHHHHHhCCCCHH
Confidence 3667788888888654
No 130
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=81.76 E-value=43 Score=35.08 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=58.6
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe-CchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|+++.. +.++.|+..+.+-...+.+|++| ....+...+ .-...|++..++.++..+.+.+.+-......
T Consensus 122 KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-- 199 (824)
T PRK07764 122 KIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-- 199 (824)
T ss_pred eEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--
Confidence 36889999854 44666766666545566666555 444444332 2235799999999999988887653333221
Q ss_pred HHHHHHHHHHHcCCCch
Q 017858 79 YEELSCKVMKYAQGVPL 95 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPl 95 (365)
.......|++.++|-+.
T Consensus 200 d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 200 EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CHHHHHHHHHHcCCCHH
Confidence 22456778899999774
No 131
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=81.57 E-value=25 Score=32.17 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=56.9
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCccH
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~ 79 (365)
.+|+|+++.. +..+.+...+-+-.+++.+|++|.+. .+...+ .-...+.+.+++.+++.+.+.... . .
T Consensus 111 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-~--- 182 (319)
T PRK06090 111 LFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-T--- 182 (319)
T ss_pred EEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-c---
Confidence 6789999854 34667766665555667666666654 444333 223578999999999998886542 1 1
Q ss_pred HHHHHHHHHHcCCCchhHH
Q 017858 80 EELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 80 ~~~~~~i~~~c~glPlai~ 98 (365)
.+..++..++|.|+...
T Consensus 183 --~~~~~l~l~~G~p~~A~ 199 (319)
T PRK06090 183 --VPAYALKLNMGSPLKTL 199 (319)
T ss_pred --hHHHHHHHcCCCHHHHH
Confidence 13467889999997654
No 132
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.45 E-value=10 Score=39.67 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=61.1
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCc-hhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|++... +..+.++..+-+...+.++|++|.+ ..+...+ .-...|++.+++.++..+.+.+.+-......
T Consensus 120 ~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~- 198 (944)
T PRK14949 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF- 198 (944)
T ss_pred cEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 458999999854 4566666665444445555555544 4443221 1125899999999999999988764332222
Q ss_pred cHHHHHHHHHHHcCCCchhH
Q 017858 78 GYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai 97 (365)
..+.+..|++.++|.|--+
T Consensus 199 -edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 199 -EAEALTLLAKAANGSMRDA 217 (944)
T ss_pred -CHHHHHHHHHHcCCCHHHH
Confidence 2356788999999988533
No 133
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.35 E-value=15 Score=37.03 Aligned_cols=93 Identities=10% Similarity=0.165 Sum_probs=60.6
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe-CchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|+|+.. +.++.+...+.+.....++|++| ....+...+ .-...+++++++.++..+.+.+.+.......+
T Consensus 126 KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie- 204 (618)
T PRK14951 126 KVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE- 204 (618)
T ss_pred eEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 37899999954 44777777665544555666555 433333222 22358999999999999999887744433222
Q ss_pred HHHHHHHHHHHcCCCchhH
Q 017858 79 YEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai 97 (365)
.+....|++.++|-+.-+
T Consensus 205 -~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 205 -PQALRLLARAARGSMRDA 222 (618)
T ss_pred -HHHHHHHHHHcCCCHHHH
Confidence 256778888998877433
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=81.11 E-value=8.7 Score=37.13 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=59.4
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCc-hhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|++... +..+.+...+.+...+..+|++|.+ ..+.... .....+++.++++++....+.+.+-.....-
T Consensus 122 ~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i- 200 (451)
T PRK06305 122 YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET- 200 (451)
T ss_pred CEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 447899998744 3455555555444446666666533 3332221 2234789999999999988887764332211
Q ss_pred cHHHHHHHHHHHcCCCc-hhHHHH
Q 017858 78 GYEELSCKVMKYAQGVP-LALKVL 100 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glP-lai~~~ 100 (365)
.++.+..|++.++|-+ .|+..+
T Consensus 201 -~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 201 -SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred -CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2356788999999865 444443
No 135
>PRK04195 replication factor C large subunit; Provisional
Probab=80.24 E-value=47 Score=32.42 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=57.4
Q ss_pred EEEEEEeCCCChH------hHHHHHccCCCCCCCcEEEEEeCchh-HHH-hc-CccceEEeCCCCHHHHHHHHHHhhhcC
Q 017858 2 KVLIVFDDVTCFS------QIESLIGSLDWLTPVSRIIITTRNKQ-VLR-NW-GVRKIYEMKALEYHHAIRLFSRHAFKQ 72 (365)
Q Consensus 2 r~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~-~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~ 72 (365)
+-+||+|+++... .++.+...+.. .+..||+|+.+.. ... .. .....+++.+++.++....+.+.+...
T Consensus 99 ~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 99 RKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc
Confidence 4689999998542 25555544432 2344666664431 111 11 223578999999999999988877443
Q ss_pred CCCCccHHHHHHHHHHHcCCCchhHH
Q 017858 73 NHPDVGYEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 73 ~~~~~~~~~~~~~i~~~c~glPlai~ 98 (365)
....+ .+....|++.++|-.-.+.
T Consensus 177 gi~i~--~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 177 GIECD--DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred CCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 33222 3678889999988765443
No 136
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=79.37 E-value=2.1 Score=36.73 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=28.6
Q ss_pred EEEEeCCCC---hHhHHHHHccCCCCCCCcEEEEEeCchhHHHhcC
Q 017858 4 LIVFDDVTC---FSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWG 46 (365)
Q Consensus 4 LlVlDdv~~---~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~ 46 (365)
++|||||.. ......+...+....+++.+||||-.+.++..+.
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999984 3345555555554456789999999998877653
No 137
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=78.53 E-value=8.2 Score=38.91 Aligned_cols=86 Identities=14% Similarity=0.060 Sum_probs=45.3
Q ss_pred HHHHHccCCCCCCCcEEEE--EeCchhHHH-hc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcC
Q 017858 16 IESLIGSLDWLTPVSRIII--TTRNKQVLR-NW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQ 91 (365)
Q Consensus 16 ~~~l~~~~~~~~~gs~ilv--TTR~~~v~~-~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~ 91 (365)
|+.+...+..+.+...|++ ||++..... .. .-...+.+.+++.+|.+.++.+.+.......+ .+....|.+.+.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls--~eal~~L~~ys~ 386 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA--AGVEELIARYTI 386 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHCCC
Confidence 4444433343344444555 666543211 11 11236789999999999999997743221111 244455555554
Q ss_pred CCchhHHHHhHh
Q 017858 92 GVPLALKVLGCF 103 (365)
Q Consensus 92 glPlai~~~~~~ 103 (365)
.-+.|+..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 445555554433
No 138
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.42 E-value=18 Score=36.50 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=59.7
Q ss_pred EEEEEEeCCCChH--hHHHHHccCCCCCCCcEEEE-EeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSRIII-TTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilv-TTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+++... ..+.+...+.+-...+.+|+ |++...+...+ .....+++.+++.++....+.+.+-.....-
T Consensus 128 ~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I- 206 (620)
T PRK14954 128 YRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI- 206 (620)
T ss_pred CEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 3478999998553 46667666654444555554 54444444322 2345899999999998888877664332211
Q ss_pred cHHHHHHHHHHHcCCCc-hhHH
Q 017858 78 GYEELSCKVMKYAQGVP-LALK 98 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glP-lai~ 98 (365)
..+.+..|++.++|-. .|+.
T Consensus 207 -~~eal~~La~~s~Gdlr~al~ 227 (620)
T PRK14954 207 -DADALQLIARKAQGSMRDAQS 227 (620)
T ss_pred -CHHHHHHHHHHhCCCHHHHHH
Confidence 1256788999999855 3443
No 139
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.25 E-value=21 Score=35.87 Aligned_cols=95 Identities=12% Similarity=0.115 Sum_probs=61.1
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCc-hhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|++... +..+.+...+.+....+.+|++|.+ ..+.... .-...+.+..++.++....+.+.+.......+
T Consensus 121 ~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~ 200 (585)
T PRK14950 121 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE 200 (585)
T ss_pred eEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 457999999754 4466666655544456666665543 3333322 22247889999999999888887644332222
Q ss_pred cHHHHHHHHHHHcCCCchhHH
Q 017858 78 GYEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~ 98 (365)
.+.+..|++.++|.+..+.
T Consensus 201 --~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 201 --PGALEAIARAATGSMRDAE 219 (585)
T ss_pred --HHHHHHHHHHcCCCHHHHH
Confidence 2567889999999885443
No 140
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=78.19 E-value=12 Score=37.83 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=60.7
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEE-EeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIII-TTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-TTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+++.. +..+.+...+-+...+.++|. ||..+.+...+ .-...|++.+++.++....+.+.+-......+
T Consensus 120 ~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e 199 (647)
T PRK07994 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE 199 (647)
T ss_pred CEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 347899999854 346666665544344554554 44444443222 12358999999999999999887633332222
Q ss_pred cHHHHHHHHHHHcCCCch-hHHHH
Q 017858 78 GYEELSCKVMKYAQGVPL-ALKVL 100 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPl-ai~~~ 100 (365)
......|++.++|.+- |+..+
T Consensus 200 --~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 200 --PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred --HHHHHHHHHHcCCCHHHHHHHH
Confidence 2556789999999775 44343
No 141
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=78.01 E-value=12 Score=38.46 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=52.3
Q ss_pred EEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEE--eCchh--HHHhc-CccceEEeCCCCHHHHHHHHHHhhhcC--
Q 017858 2 KVLIVFDDVTC--FSQIESLIGSLDWLTPVSRIIIT--TRNKQ--VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQ-- 72 (365)
Q Consensus 2 r~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvT--TR~~~--v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~-- 72 (365)
+.+||+|+++. ..+++.+.+.+. .|..++++ |.+.. +.... .-...+.+++++.++...++.+.+-..
T Consensus 110 ~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~ 186 (725)
T PRK13341 110 RTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKER 186 (725)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHh
Confidence 45899999974 445666665543 35555553 34331 11111 113479999999999999998876310
Q ss_pred ---CCCCccHHHHHHHHHHHcCCCc
Q 017858 73 ---NHPDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 73 ---~~~~~~~~~~~~~i~~~c~glP 94 (365)
.....-.++....|++.+.|--
T Consensus 187 ~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 187 GYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1111112345566777776653
No 142
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=77.32 E-value=13 Score=35.42 Aligned_cols=91 Identities=10% Similarity=0.165 Sum_probs=53.5
Q ss_pred EEEEeCCCChH---h-HHHHHccCCC-CCCCcEEEEEeCchh-H--------HHhcCccceEEeCCCCHHHHHHHHHHhh
Q 017858 4 LIVFDDVTCFS---Q-IESLIGSLDW-LTPVSRIIITTRNKQ-V--------LRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 4 LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~ilvTTR~~~-v--------~~~~~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
+||+||+.... . .+.+...+.. ...|..+|+||.... . ...+...-.+.+++.+.++-..++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 78999997421 1 1223322211 023456888886532 1 1122223468999999999999999987
Q ss_pred hcCCCCCccHHHHHHHHHHHcCCCchh
Q 017858 70 FKQNHPDVGYEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPla 96 (365)
......-+ .++..-|++.+.|-.-.
T Consensus 282 ~~~~~~l~--~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 282 EEEGLELP--DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHcCCCCC--HHHHHHHHHhcCCCHHH
Confidence 54332222 36677777777776543
No 143
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=77.12 E-value=23 Score=36.32 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=61.0
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcE-EEEEeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSR-IIITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~-ilvTTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|++... +.++.+...+-....... |++||+...+.... .-...+++.+++.++..+.+...+-......+
T Consensus 119 ~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id 198 (725)
T PRK07133 119 YKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE 198 (725)
T ss_pred CEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 347899999844 456777665544334444 44555554444322 22358999999999999888876643332111
Q ss_pred cHHHHHHHHHHHcCCCc-hhHHHHh
Q 017858 78 GYEELSCKVMKYAQGVP-LALKVLG 101 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glP-lai~~~~ 101 (365)
...+..|++.++|-+ .|+..+.
T Consensus 199 --~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 199 --KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHH
Confidence 245778899998866 4444433
No 144
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=77.08 E-value=19 Score=33.00 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=56.3
Q ss_pred EEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
=++|+|+++... .-+.+...+-+-..++.+|++|.+. .+...+ .-...+.+.+++.+++.+.+.... . .
T Consensus 115 kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~-~-- 187 (319)
T PRK08769 115 QVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V-S-- 187 (319)
T ss_pred EEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-C--
Confidence 478999998543 3455555544444567666666654 333332 223578999999999988886531 1 1
Q ss_pred HHHHHHHHHHHcCCCchhHH
Q 017858 79 YEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (365)
...+..++..++|.|+...
T Consensus 188 -~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 188 -ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred -hHHHHHHHHHcCCCHHHHH
Confidence 1336678999999997543
No 145
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=76.57 E-value=8.8 Score=34.62 Aligned_cols=88 Identities=15% Similarity=0.216 Sum_probs=57.8
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCCCCCcE-EEEEeCchhHHHhcC-ccceEEeCCCCHHHHHHHHHHhhhcCCCCCccH
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSR-IIITTRNKQVLRNWG-VRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~-ilvTTR~~~v~~~~~-~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~ 79 (365)
.+|||+++.. +.|..+.....+..+.++ |+||+--..+..... -..-|+.++|..++..+-+...+-.++..-+.
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~- 210 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD- 210 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH-
Confidence 5899999854 558888776655455555 455554443322221 12368999999999999998888555443332
Q ss_pred HHHHHHHHHHcCCC
Q 017858 80 EELSCKVMKYAQGV 93 (365)
Q Consensus 80 ~~~~~~i~~~c~gl 93 (365)
+..+.|++.++|-
T Consensus 211 -~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 211 -DALKLIAKISDGD 223 (346)
T ss_pred -HHHHHHHHHcCCc
Confidence 5567788888775
No 146
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.39 E-value=19 Score=35.64 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=61.3
Q ss_pred EEEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+++... ..+.+...+.+....+.+|++|.+. .+...+ .-...+++.+++.++..+.+.+.+.......+
T Consensus 120 ~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~ 199 (527)
T PRK14969 120 FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD 199 (527)
T ss_pred ceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 4589999998554 3666666665544556566555443 332211 11247899999999999888877643332222
Q ss_pred cHHHHHHHHHHHcCCCch-hHHHHh
Q 017858 78 GYEELSCKVMKYAQGVPL-ALKVLG 101 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPl-ai~~~~ 101 (365)
......|++.++|.+- |+..+-
T Consensus 200 --~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 200 --ATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2556788999999774 444443
No 147
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=76.17 E-value=62 Score=30.01 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=54.6
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCc-hhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCccH
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~ 79 (365)
.+|+|+++.. +..+.+...+-+-.+++.+|.+|.+ ..+...+ .-...+.+.+++.++..+.+.... . . +
T Consensus 135 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~-~-~- 207 (342)
T PRK06964 135 VVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V-A-D- 207 (342)
T ss_pred EEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-C-h-
Confidence 6788999854 4477777776655566655555555 4444332 223589999999999998887652 1 1 1
Q ss_pred HHHHHHHHHHcCCCchhH
Q 017858 80 EELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 80 ~~~~~~i~~~c~glPlai 97 (365)
...++..++|.|...
T Consensus 208 ---~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 208 ---ADALLAEAGGAPLAA 222 (342)
T ss_pred ---HHHHHHHcCCCHHHH
Confidence 123567789999643
No 148
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.47 E-value=37 Score=33.17 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=57.9
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe-CchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+++.. +..+.+...+....++..+|++| +...+.... .....+++.+++.++....+.+.+-......
T Consensus 120 ~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i- 198 (486)
T PRK14953 120 YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY- 198 (486)
T ss_pred eeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 448999999854 34566665555444455555544 443333221 2234789999999999988888764333222
Q ss_pred cHHHHHHHHHHHcCCCchhH
Q 017858 78 GYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai 97 (365)
..+.+..|++.++|.+..+
T Consensus 199 -d~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 199 -EEKALDLLAQASEGGMRDA 217 (486)
T ss_pred -CHHHHHHHHHHcCCCHHHH
Confidence 2255677888898876544
No 149
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=75.17 E-value=16 Score=36.63 Aligned_cols=88 Identities=10% Similarity=0.203 Sum_probs=52.5
Q ss_pred EEEEeCCCCh---HhH-HHHHccCCC-CCCCcEEEEEeCch---------hHHHhcCccceEEeCCCCHHHHHHHHHHhh
Q 017858 4 LIVFDDVTCF---SQI-ESLIGSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 4 LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~ilvTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
+||+||+... +.| +.|+..+.. ...|..|||||+.. .+...+...-.+.+++.+.+.-..++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7999999743 222 223322221 12355688988864 122233444588999999999999999987
Q ss_pred hcCCCCCccHHHHHHHHHHHcCCC
Q 017858 70 FKQNHPDVGYEELSCKVMKYAQGV 93 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~gl 93 (365)
.......+ .+++.-|++.+.+.
T Consensus 460 ~~r~l~l~--~eVi~yLa~r~~rn 481 (617)
T PRK14086 460 VQEQLNAP--PEVLEFIASRISRN 481 (617)
T ss_pred HhcCCCCC--HHHHHHHHHhccCC
Confidence 44332222 35566666666544
No 150
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.75 E-value=1.9 Score=22.40 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=6.8
Q ss_pred CCceEEeccCCcc
Q 017858 314 KKLVLVEVPDSDI 326 (365)
Q Consensus 314 ~~L~~L~l~~~~l 326 (365)
++|++|+|++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4566666666655
No 151
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=74.61 E-value=9.4 Score=35.70 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=53.2
Q ss_pred EEEEEeCCCCh-------------H---hHHHHHccCCC--CCCCcEEEEEeCchhHH-----HhcCccceEEeCCCCHH
Q 017858 3 VLIVFDDVTCF-------------S---QIESLIGSLDW--LTPVSRIIITTRNKQVL-----RNWGVRKIYEMKALEYH 59 (365)
Q Consensus 3 ~LlVlDdv~~~-------------~---~~~~l~~~~~~--~~~gs~ilvTTR~~~v~-----~~~~~~~~~~l~~L~~~ 59 (365)
.+|++|+++.. + .+..+...+.. ...+..||.||...... .....+..+.+...+.+
T Consensus 217 ~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~ 296 (364)
T TIGR01242 217 SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFE 296 (364)
T ss_pred cEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHH
Confidence 58999998743 1 13333322221 12466788888754322 11123457899999999
Q ss_pred HHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCc
Q 017858 60 HAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 60 e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (365)
+..++|..++.+...... .....+++.+.|..
T Consensus 297 ~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 297 GRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 999999988744332211 12456677777764
No 152
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=74.48 E-value=15 Score=35.58 Aligned_cols=114 Identities=12% Similarity=0.165 Sum_probs=64.6
Q ss_pred EEEEeCCCCh---H-hHHHHHccCCC-CCCCcEEEEEeCchh---------HHHhcCccceEEeCCCCHHHHHHHHHHhh
Q 017858 4 LIVFDDVTCF---S-QIESLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 4 LlVlDdv~~~---~-~~~~l~~~~~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
+||+||+... + ..+.+...+.. ...|..|++||.... +...+.....+++++.+.++-..++.+.+
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 7999999632 1 11233322210 013445888886542 12223333579999999999999999988
Q ss_pred hcCCCCCccHHHHHHHHHHHcCCCchhHH----HHhHhh--ccc--CHHHHHHHHHHH
Q 017858 70 FKQNHPDVGYEELSCKVMKYAQGVPLALK----VLGCFL--HKR--EKEVWESATDKL 119 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPlai~----~~~~~l--~~~--~~~~w~~~~~~l 119 (365)
-.....-+ +++..-|++.++|-.-.+. .+..+. .++ +....+.+++.+
T Consensus 294 ~~~~~~l~--~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 294 EEEGIDLP--DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHcCCCCC--HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 54322222 3667888888887765432 222211 122 555666666654
No 153
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=74.35 E-value=32 Score=34.35 Aligned_cols=93 Identities=11% Similarity=0.168 Sum_probs=60.3
Q ss_pred EEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCc-hhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|++.... .++.+...+.+......+|++|.+ ..+.... .-...++..+++.++..+.+.+.+......-+
T Consensus 121 KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id- 199 (563)
T PRK06647 121 RVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE- 199 (563)
T ss_pred EEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 478999998543 467777766654556666665543 3333222 22347899999999999888887644332222
Q ss_pred HHHHHHHHHHHcCCCchhH
Q 017858 79 YEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai 97 (365)
++.+..|++.++|-+..+
T Consensus 200 -~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 200 -DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred -HHHHHHHHHHcCCCHHHH
Confidence 356777889999977433
No 154
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=74.06 E-value=21 Score=35.67 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=60.4
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe-CchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCccH
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~ 79 (365)
++|+|+++.. ..++.+...+.+...+..+|++| ....+.... .-...+++.+++.++....+...+......-+
T Consensus 122 VIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is-- 199 (605)
T PRK05896 122 VYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE-- 199 (605)
T ss_pred EEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 6999999853 45666666554434455555444 443443222 22357999999999999988887644332111
Q ss_pred HHHHHHHHHHcCCCc-hhHHHHhH
Q 017858 80 EELSCKVMKYAQGVP-LALKVLGC 102 (365)
Q Consensus 80 ~~~~~~i~~~c~glP-lai~~~~~ 102 (365)
.+.+..+++.++|-+ .|+..+-.
T Consensus 200 ~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 200 DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 255778899999966 44444443
No 155
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=73.47 E-value=38 Score=30.96 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=56.1
Q ss_pred EEEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 2 r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
+=++|+|+++... ..+.+...+-+-.+..-|++|++-..+.... .-...+++.++++++..+.+.+.......
T Consensus 125 ~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---- 200 (314)
T PRK07399 125 RKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---- 200 (314)
T ss_pred ceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----
Confidence 3478999998543 3556665554333333344444444443332 22358999999999999999887522111
Q ss_pred HHHHHHHHHHHcCCCchhHH
Q 017858 79 YEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (365)
......++..++|-|....
T Consensus 201 -~~~~~~l~~~a~Gs~~~al 219 (314)
T PRK07399 201 -NINFPELLALAQGSPGAAI 219 (314)
T ss_pred -hhHHHHHHHHcCCCHHHHH
Confidence 1123578889999996544
No 156
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.19 E-value=27 Score=34.39 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=57.9
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|+|+.. +..+.+...+.+...++++|++|.+. .+...+ .-...+++++++.++..+.+...+-......+
T Consensus 121 kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~- 199 (509)
T PRK14958 121 KVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE- 199 (509)
T ss_pred EEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 37899999854 44666666555444566666655443 333221 11247899999999988877776643332222
Q ss_pred HHHHHHHHHHHcCCCchhH
Q 017858 79 YEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai 97 (365)
+.....|++.++|-+..+
T Consensus 200 -~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 200 -NAALDLLARAANGSVRDA 217 (509)
T ss_pred -HHHHHHHHHHcCCcHHHH
Confidence 245677888898877433
No 157
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=71.22 E-value=20 Score=34.57 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=48.8
Q ss_pred EEEEeCCCChHh----HHHHHccCCC-CCCCcEEEEEeCch-h--------HHHhcCccceEEeCCCCHHHHHHHHHHhh
Q 017858 4 LIVFDDVTCFSQ----IESLIGSLDW-LTPVSRIIITTRNK-Q--------VLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 4 LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~ilvTTR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
+|++||+..... .+.+...+.. ...|..||+||... . +...+...-.+.+.+++.++-..++.+++
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 789999864311 1222222210 01345688888653 1 22223334578999999999999999887
Q ss_pred hcCCCCCccHHHHHHHHHHHcCC
Q 017858 70 FKQNHPDVGYEELSCKVMKYAQG 92 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~g 92 (365)
-.....-+ .++..-|++.+.|
T Consensus 285 ~~~~~~l~--~evl~~la~~~~~ 305 (445)
T PRK12422 285 EALSIRIE--ETALDFLIEALSS 305 (445)
T ss_pred HHcCCCCC--HHHHHHHHHhcCC
Confidence 44322111 2445556555553
No 158
>PRK04132 replication factor C small subunit; Provisional
Probab=70.86 E-value=39 Score=35.40 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=59.5
Q ss_pred EEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|+++... ..+.+...+-.....+++|.+|.+. .+.... .-...+++.+++.++-.+.+...+-......+
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~- 710 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT- 710 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC-
Confidence 589999999653 4566665554334456666655544 333222 22358999999999999888876643322111
Q ss_pred HHHHHHHHHHHcCCCchh
Q 017858 79 YEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPla 96 (365)
.+....|++.|+|-+..
T Consensus 711 -~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 711 -EEGLQAILYIAEGDMRR 727 (846)
T ss_pred -HHHHHHHHHHcCCCHHH
Confidence 35678899999998743
No 159
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=70.22 E-value=24 Score=33.44 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=61.3
Q ss_pred EEEEeCCCChH----hHHHHHccCCC-CCCCcEEEEEeCchh---------HHHhcCccceEEeCCCCHHHHHHHHHHhh
Q 017858 4 LIVFDDVTCFS----QIESLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 4 LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
++++||++-.. .-+.++..|.. ...|..||+|++... +...+...-.+.+.+.+.+....++.+++
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 78999997321 12233333221 123348999996553 23333444589999999999999999977
Q ss_pred hcCCC--CCccHHHHHHHHHHHcCCCchhHHHHhHhhcc--c--CHHHHHHHHHHH
Q 017858 70 FKQNH--PDVGYEELSCKVMKYAQGVPLALKVLGCFLHK--R--EKEVWESATDKL 119 (365)
Q Consensus 70 ~~~~~--~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~--~--~~~~w~~~~~~l 119 (365)
..... +++-..-++..+-.-..-+.-|+..+..+-.. + +.+.-.+++..+
T Consensus 258 ~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~ 313 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDL 313 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHh
Confidence 44332 23323334444333333344444333333221 1 444444555543
No 160
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=68.67 E-value=9.6 Score=33.86 Aligned_cols=119 Identities=10% Similarity=0.028 Sum_probs=71.7
Q ss_pred HhhcCCCceEEEEeecccccccccc--CccccCCCCCCceEEEecCccCCCcccccc----c---cCC-CCCCcccEEEE
Q 017858 230 LTYNTGTEKIEGICLDMSKIKEIRL--NPSTFTKMPKLRFLKFYRSSVNGKNKCKIS----Y---LQD-PGFAEVKYLHW 299 (365)
Q Consensus 230 ~~~~~~~~~~~~l~l~~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~----~---lp~-~~l~~L~~L~l 299 (365)
+..--..+.++.+.+..+....... ..+.+++-..|.+|.+++|.+....+.+|- + ..+ ..-+.|++...
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 3333445667777666665543211 134567778899999944433222222221 1 111 34467888888
Q ss_pred eCCCCCCCCCCC-----C-CCCceEEeccCCcccc--c----ccccccCccCceecccccc
Q 017858 300 YGYPLKSLPSNL-----S-AKKLVLVEVPDSDIER--L----WHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 300 ~~~~i~~lp~~~-----~-l~~L~~L~l~~~~l~~--l----p~~i~~l~~L~~L~l~~~~ 348 (365)
..|++.+-|... . -.+|.++.+..|.|.. + -.+...+++|+.||+..|-
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 888887766433 1 2478899999988741 1 1234567899999998885
No 161
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=68.19 E-value=34 Score=27.72 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=52.2
Q ss_pred EEEEEEeCC------CChHhHHHHHccCCCCCCCcEEEEEeC-chh----HHHhcC-ccceEEeCCCCHHHHHHHHHHhh
Q 017858 2 KVLIVFDDV------TCFSQIESLIGSLDWLTPVSRIIITTR-NKQ----VLRNWG-VRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 2 r~LlVlDdv------~~~~~~~~l~~~~~~~~~gs~ilvTTR-~~~----v~~~~~-~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
+-+||+.|+ +..+.++.+...+....+++.+|+.+. ... +..... ....+...+++..+........+
T Consensus 58 ~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~ 137 (172)
T PF06144_consen 58 KKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERA 137 (172)
T ss_dssp EEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHH
T ss_pred CeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHH
Confidence 446777776 345668888888876677888888887 221 122222 22457778888888888887776
Q ss_pred hcCCCCCccHHHHHHHHHHHcCCCchhHH
Q 017858 70 FKQNHPDVGYEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPlai~ 98 (365)
-..+- .-.++.+..+++..|+-+.++.
T Consensus 138 ~~~g~--~i~~~a~~~L~~~~~~d~~~l~ 164 (172)
T PF06144_consen 138 KKNGL--KIDPDAAQYLIERVGNDLSLLQ 164 (172)
T ss_dssp HHTT---EE-HHHHHHHHHHHTT-HHHHH
T ss_pred HHcCC--CCCHHHHHHHHHHhChHHHHHH
Confidence 43322 1223567777777777776553
No 162
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=68.18 E-value=26 Score=33.74 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=52.3
Q ss_pred EEEEeCCCCh---HhH-HHHHccCCC-CCCCcEEEEEeC-chhHHH--------hcCccceEEeCCCCHHHHHHHHHHhh
Q 017858 4 LIVFDDVTCF---SQI-ESLIGSLDW-LTPVSRIIITTR-NKQVLR--------NWGVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 4 LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~ilvTTR-~~~v~~--------~~~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
+|++||+... ..+ +.+...+.. ...|..||+||. .+.-.. .+...-.+.+++.+.++-.+++.+.+
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 7999999743 111 223222211 023446888885 332211 12233478999999999999999887
Q ss_pred hcCCCCCccHHHHHHHHHHHcCCCch
Q 017858 70 FKQNHPDVGYEELSCKVMKYAQGVPL 95 (365)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPl 95 (365)
......-+ +++..-|++.+.|---
T Consensus 277 ~~~~~~l~--~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 277 EIEHGELP--EEVLNFVAENVDDNLR 300 (440)
T ss_pred HhcCCCCC--HHHHHHHHhccccCHH
Confidence 43322222 3667778887776543
No 163
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.04 E-value=1 Score=37.88 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=15.9
Q ss_pred CCCceEEeccCC-ccccc-ccccccCccCceeccc
Q 017858 313 AKKLVLVEVPDS-DIERL-WHCVKHYSKLNQIIHA 345 (365)
Q Consensus 313 l~~L~~L~l~~~-~l~~l-p~~i~~l~~L~~L~l~ 345 (365)
.++|+.|++++| .|+.- -..+..+++|+.|++.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 345555666555 44332 1233445555555543
No 164
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=67.96 E-value=17 Score=32.67 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=43.6
Q ss_pred EEEEEeCCCCh-----------HhHHHHHccCCCCCCCcEEEEEeCchhHHHhc--------CccceEEeCCCCHHHHHH
Q 017858 3 VLIVFDDVTCF-----------SQIESLIGSLDWLTPVSRIIITTRNKQVLRNW--------GVRKIYEMKALEYHHAIR 63 (365)
Q Consensus 3 ~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~--------~~~~~~~l~~L~~~e~~~ 63 (365)
-+|++|++... +.++.+...+.....+.+||++|......... .....+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 47889999632 23556666555455566777776543222211 113478999999999999
Q ss_pred HHHHhh
Q 017858 64 LFSRHA 69 (365)
Q Consensus 64 L~~~~~ 69 (365)
++...+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 998876
No 165
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.72 E-value=1.4e+02 Score=30.00 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=60.1
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEE-EeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIII-TTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-TTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
=++|+|++... +..+.+...+.+...+..+|+ ||....+...+ .-...+++.+++.++..+.+.+.+.......+
T Consensus 120 KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~- 198 (584)
T PRK14952 120 RIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD- 198 (584)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 37899999844 446666666654444555554 54444444332 22358999999999999888877643332222
Q ss_pred HHHHHHHHHHHcCCCch-hHHHH
Q 017858 79 YEELSCKVMKYAQGVPL-ALKVL 100 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPl-ai~~~ 100 (365)
.+....|++.++|-+- |+..+
T Consensus 199 -~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 199 -DAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred -HHHHHHHHHHcCCCHHHHHHHH
Confidence 2456778888888763 44343
No 166
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.11 E-value=63 Score=32.71 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=57.3
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCc-hhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|+++.. +.++.+...+.+......+|++|.+ ..+.... .-...+++..++.++....+.+.+.......+
T Consensus 123 KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is- 201 (620)
T PRK14948 123 KVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE- 201 (620)
T ss_pred eEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC-
Confidence 47899999854 4466676665543445555544443 3333222 22347888899999988888776643322211
Q ss_pred HHHHHHHHHHHcCCCchhH
Q 017858 79 YEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai 97 (365)
.+.+..|++.++|-+..+
T Consensus 202 -~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 202 -PEALTLVAQRSQGGLRDA 219 (620)
T ss_pred -HHHHHHHHHHcCCCHHHH
Confidence 245778899999877543
No 167
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=65.88 E-value=55 Score=32.66 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=57.6
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEE-EeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIII-TTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-TTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|++... ..++.+...+.+...+..+|+ ||....+.... .-...++..+++.++....+...+-......+
T Consensus 120 ~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~ 199 (559)
T PRK05563 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE 199 (559)
T ss_pred eEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 347899999854 457777766554344444454 44443333222 22347889999999999888887643332222
Q ss_pred cHHHHHHHHHHHcCCCchh
Q 017858 78 GYEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPla 96 (365)
.+.+..|++.++|-+..
T Consensus 200 --~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 200 --DEALRLIARAAEGGMRD 216 (559)
T ss_pred --HHHHHHHHHHcCCCHHH
Confidence 25567788888887643
No 168
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=64.98 E-value=95 Score=28.09 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=37.4
Q ss_pred EEEEEeCCCCh---HhHHHHHccCCCCCCCcEEEEEeCchhH-HHhc-CccceEEeCCCCHHHHHHHHHH
Q 017858 3 VLIVFDDVTCF---SQIESLIGSLDWLTPVSRIIITTRNKQV-LRNW-GVRKIYEMKALEYHHAIRLFSR 67 (365)
Q Consensus 3 ~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTTR~~~v-~~~~-~~~~~~~l~~L~~~e~~~L~~~ 67 (365)
-+||+|++... +..+.+...+.....++++|+||....- .... .-...+.+...+.++..+++..
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 47899999854 2223333323333467788888865431 1111 1123677778888887776654
No 169
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=64.88 E-value=5 Score=21.31 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=11.2
Q ss_pred ccCceeccccccccc
Q 017858 337 SKLNQIIHAACNMLT 351 (365)
Q Consensus 337 ~~L~~L~l~~~~~l~ 351 (365)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 678888888887444
No 170
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=64.23 E-value=10 Score=30.88 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=24.6
Q ss_pred EEEEeCCCCh-----HhHHHHHccCCCCCCCcEEEEEeCchh
Q 017858 4 LIVFDDVTCF-----SQIESLIGSLDWLTPVSRIIITTRNKQ 40 (365)
Q Consensus 4 LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTTR~~~ 40 (365)
|+|||.+-.. -..+.+...+.....+..||+|.|+..
T Consensus 98 LlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 98 LVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred EEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 7999998532 123444444444456778999999974
No 171
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=62.87 E-value=72 Score=29.36 Aligned_cols=85 Identities=11% Similarity=0.176 Sum_probs=56.9
Q ss_pred EEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCccH
Q 017858 4 LIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (365)
Q Consensus 4 LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~ 79 (365)
.+|+|+++... ..+.+...+-+-.+++.+|++|.+. .+...+ .-...+.+.+++.++..+.+..... . +
T Consensus 110 V~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~-~----~-- 182 (325)
T PRK06871 110 VVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS-A----E-- 182 (325)
T ss_pred EEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-c----C--
Confidence 67899998543 4666666665555677777777665 333332 2235899999999999988877641 1 1
Q ss_pred HHHHHHHHHHcCCCch
Q 017858 80 EELSCKVMKYAQGVPL 95 (365)
Q Consensus 80 ~~~~~~i~~~c~glPl 95 (365)
...+...+..++|.|.
T Consensus 183 ~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 183 ISEILTALRINYGRPL 198 (325)
T ss_pred hHHHHHHHHHcCCCHH
Confidence 1235567788999995
No 172
>CHL00181 cbbX CbbX; Provisional
Probab=62.65 E-value=61 Score=29.16 Aligned_cols=67 Identities=7% Similarity=0.105 Sum_probs=43.9
Q ss_pred EEEEeCCCCh-----------HhHHHHHccCCCCCCCcEEEEEeCchhHHHhc--------CccceEEeCCCCHHHHHHH
Q 017858 4 LIVFDDVTCF-----------SQIESLIGSLDWLTPVSRIIITTRNKQVLRNW--------GVRKIYEMKALEYHHAIRL 64 (365)
Q Consensus 4 LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~--------~~~~~~~l~~L~~~e~~~L 64 (365)
+|++|++... +..+.+...+.+...+.+||+++....+.... .....+.+++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 6899999642 33455555554444566777777644332211 1234799999999999999
Q ss_pred HHHhhh
Q 017858 65 FSRHAF 70 (365)
Q Consensus 65 ~~~~~~ 70 (365)
+.+.+-
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 988874
No 173
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=62.59 E-value=79 Score=28.32 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=58.3
Q ss_pred EEEEEEeCCCCh---HhHHHHHccCCCCCCCcEEEEEeCchh-------HHHhcCccceEEeCCCCHHHHHHHHHHhhhc
Q 017858 2 KVLIVFDDVTCF---SQIESLIGSLDWLTPVSRIIITTRNKQ-------VLRNWGVRKIYEMKALEYHHAIRLFSRHAFK 71 (365)
Q Consensus 2 r~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTTR~~~-------v~~~~~~~~~~~l~~L~~~e~~~L~~~~~~~ 71 (365)
+-++|++++... ..++.+...+....++..+|+++-... ..........+...+++..+-...+...+-.
T Consensus 47 ~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 126 (302)
T TIGR01128 47 RRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKK 126 (302)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHH
Confidence 457889998753 457777666665555666666664211 1211123457788889988888888777643
Q ss_pred CCCCCccHHHHHHHHHHHcCCCchhH
Q 017858 72 QNHPDVGYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPlai 97 (365)
....-+ .+.+..+++.++|-..++
T Consensus 127 ~g~~i~--~~a~~~l~~~~~~d~~~l 150 (302)
T TIGR01128 127 LGLRID--PDAVQLLAELVEGNLLAI 150 (302)
T ss_pred cCCCCC--HHHHHHHHHHhCcHHHHH
Confidence 332222 256777888888766554
No 174
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.93 E-value=5.9 Score=21.58 Aligned_cols=14 Identities=7% Similarity=0.264 Sum_probs=8.7
Q ss_pred CCceEEeccCCccc
Q 017858 314 KKLVLVEVPDSDIE 327 (365)
Q Consensus 314 ~~L~~L~l~~~~l~ 327 (365)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35667777776653
No 175
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=61.10 E-value=83 Score=33.35 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=53.0
Q ss_pred eEEeCCCCHHHHHHHHHHhhhcCC-C-CCccHHHHHHHHHHHcCCCchhHHHHhHhhccc-----CHHHHHHHHHHHhhc
Q 017858 50 IYEMKALEYHHAIRLFSRHAFKQN-H-PDVGYEELSCKVMKYAQGVPLALKVLGCFLHKR-----EKEVWESATDKLQRI 122 (365)
Q Consensus 50 ~~~l~~L~~~e~~~L~~~~~~~~~-~-~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-----~~~~w~~~~~~l~~~ 122 (365)
.+...|++.++-.+++..++-... . .++.++.+|+.++..-|-.-.||.++-.+.... ..++..++.+++..
T Consensus 930 eIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleeiE~- 1008 (1164)
T PTZ00112 930 RLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFD- 1008 (1164)
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHh-
Confidence 467799999999999999885322 1 233344445545555566667776555444321 23333333333321
Q ss_pred CcccHHHHHHHHHhcCChhhhhhhhhhc
Q 017858 123 LYPSILEVLKISYDSLDDKEKNIFLDVA 150 (365)
Q Consensus 123 ~~~~~~~~l~~sy~~L~~~~~~~~~~ls 150 (365)
..+.-....||.+.|..+..+.
T Consensus 1009 ------srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 1009 ------SPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred ------hhHHHHHHcCCHHHHHHHHHHH
Confidence 1233345678888776655443
No 176
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.66 E-value=38 Score=33.92 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=58.1
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEE-EeCchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIII-TTRNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-TTR~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|+++.. +..+.+...+-+...++.+|+ ||....+...+ .-...+++.+++.++....+...+-......+
T Consensus 121 KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~- 199 (576)
T PRK14965 121 KIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS- 199 (576)
T ss_pred eEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC-
Confidence 36899999854 346666655544344555554 55444444332 22347889999999998888776633332222
Q ss_pred HHHHHHHHHHHcCCCc-hhHHHH
Q 017858 79 YEELSCKVMKYAQGVP-LALKVL 100 (365)
Q Consensus 79 ~~~~~~~i~~~c~glP-lai~~~ 100 (365)
.+.+..|++.++|-. .|+..+
T Consensus 200 -~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 200 -DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred -HHHHHHHHHHcCCCHHHHHHHH
Confidence 255677888888855 444444
No 177
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=60.30 E-value=40 Score=29.76 Aligned_cols=68 Identities=7% Similarity=0.093 Sum_probs=41.3
Q ss_pred EEEEeCCCC----------hHhHHHHHccCCCCCCCcEEEEEeCchhHHH------hc--CccceEEeCCCCHHHHHHHH
Q 017858 4 LIVFDDVTC----------FSQIESLIGSLDWLTPVSRIIITTRNKQVLR------NW--GVRKIYEMKALEYHHAIRLF 65 (365)
Q Consensus 4 LlVlDdv~~----------~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~------~~--~~~~~~~l~~L~~~e~~~L~ 65 (365)
+|++|++.. .+..+.+...+.+......+++++....... .. .....+++++++.+|-.+++
T Consensus 108 VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il 187 (261)
T TIGR02881 108 VLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIA 187 (261)
T ss_pred EEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHH
Confidence 689999974 2235555555444334445566654332211 00 11246899999999999999
Q ss_pred HHhhhc
Q 017858 66 SRHAFK 71 (365)
Q Consensus 66 ~~~~~~ 71 (365)
.+.+..
T Consensus 188 ~~~~~~ 193 (261)
T TIGR02881 188 ERMVKE 193 (261)
T ss_pred HHHHHH
Confidence 887743
No 178
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=59.20 E-value=71 Score=28.99 Aligned_cols=89 Identities=12% Similarity=0.195 Sum_probs=54.5
Q ss_pred EEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCc-hhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
=++|+||+.... ..+.+...+-+..+++.+|++|.+ ..+.+.. .-...+++.++++++..+.+... + .+
T Consensus 92 KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~--~---~~-- 164 (299)
T PRK07132 92 KILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK--N---KE-- 164 (299)
T ss_pred eEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc--C---CC--
Confidence 468889987553 356666666555567777765543 3344332 22468999999999998777654 1 11
Q ss_pred HHHHHHHHHHHcCCCchhHHH
Q 017858 79 YEELSCKVMKYAQGVPLALKV 99 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~ 99 (365)
++.+..++...+|.=-|+..
T Consensus 165 -~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 165 -KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -hhHHHHHHHHcCCHHHHHHH
Confidence 13466666667763344444
No 179
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=58.88 E-value=8 Score=19.39 Aligned_cols=19 Identities=42% Similarity=0.812 Sum_probs=14.2
Q ss_pred CceEEeccCCccccccccc
Q 017858 315 KLVLVEVPDSDIERLWHCV 333 (365)
Q Consensus 315 ~L~~L~l~~~~l~~lp~~i 333 (365)
+|..|++.+++++++++++
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 4677888888888877654
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=58.31 E-value=80 Score=29.03 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=43.4
Q ss_pred EEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHh
Q 017858 4 LIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRH 68 (365)
Q Consensus 4 LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~ 68 (365)
.+|+|++.... ..+.+...+-+...++.+|++|.+.. +.... .-...+++.+++.++..+.+...
T Consensus 113 vviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 113 VYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 68899987543 36666666655556777777776543 32222 22357999999999998877653
No 181
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=57.87 E-value=80 Score=29.16 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=57.2
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCch-hHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
=.+|+|+++.. +..+.+...+-+-..++.+|.+|.+. .+...+ .-.+.+.+.+++.+++.+.+.... + .+
T Consensus 110 kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---~~-- 183 (334)
T PRK07993 110 KVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---MS-- 183 (334)
T ss_pred eEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C---CC--
Confidence 36889999854 34666666665555667666666654 344332 223478999999999988886542 1 11
Q ss_pred HHHHHHHHHHHcCCCchh
Q 017858 79 YEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPla 96 (365)
.+.+..++..++|.|..
T Consensus 184 -~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 184 -QDALLAALRLSAGAPGA 200 (334)
T ss_pred -HHHHHHHHHHcCCCHHH
Confidence 13467789999999953
No 182
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=52.79 E-value=20 Score=27.50 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=23.9
Q ss_pred EEEEEEeCCCCh--H---hHHHHHccCCCC---CCCcEEEEEeCchh
Q 017858 2 KVLIVFDDVTCF--S---QIESLIGSLDWL---TPVSRIIITTRNKQ 40 (365)
Q Consensus 2 r~LlVlDdv~~~--~---~~~~l~~~~~~~---~~gs~ilvTTR~~~ 40 (365)
..+||+||++.. + .+.......... ..+..||+||....
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 468999999953 2 233333333221 35778888888663
No 183
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=49.60 E-value=1.3e+02 Score=27.43 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=49.1
Q ss_pred EEEEEEeCCC-----ChHhHHHHHccCCCCCCCcEEEEEeCch-----hHHHhc-CccceEEeC---CCCHHHHHHHHHH
Q 017858 2 KVLIVFDDVT-----CFSQIESLIGSLDWLTPVSRIIITTRNK-----QVLRNW-GVRKIYEMK---ALEYHHAIRLFSR 67 (365)
Q Consensus 2 r~LlVlDdv~-----~~~~~~~l~~~~~~~~~gs~ilvTTR~~-----~v~~~~-~~~~~~~l~---~L~~~e~~~L~~~ 67 (365)
+-+||++|+. ..+.++.+...+.+..+.+.+|+++..+ ...... ......... +.+.++-......
T Consensus 62 ~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~ 141 (326)
T PRK07452 62 GRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVER 141 (326)
T ss_pred ceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHH
Confidence 3467788762 2344556665555445567777754332 111111 111233333 3344555556666
Q ss_pred hhhcCCCCCccHHHHHHHHHHHcCCCchhHH
Q 017858 68 HAFKQNHPDVGYEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 98 (365)
.+-.....-+ .+.+..+++.+||...++.
T Consensus 142 ~~~~~g~~i~--~~a~~~L~~~~g~dl~~l~ 170 (326)
T PRK07452 142 TAQELGVKLT--PEAAELLAEAVGNDSRRLY 170 (326)
T ss_pred HHHHcCCCCC--HHHHHHHHHHhCccHHHHH
Confidence 6533332222 2667888888888776653
No 184
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=46.51 E-value=39 Score=27.41 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=30.5
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCC
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALE 57 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~ 57 (365)
.+|+||++.. +..+.+...+-+...++.+|++|++.. +.... .-...+++.+++
T Consensus 105 viiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 105 VIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 6899999854 446666665554557888888888764 33222 222456666654
No 185
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=46.46 E-value=9.7 Score=34.33 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=5.9
Q ss_pred CCCceEEeccCC
Q 017858 313 AKKLVLVEVPDS 324 (365)
Q Consensus 313 l~~L~~L~l~~~ 324 (365)
++.|++|.++.|
T Consensus 337 f~~L~~lSlsRC 348 (419)
T KOG2120|consen 337 FNYLQHLSLSRC 348 (419)
T ss_pred cchheeeehhhh
Confidence 444555555444
No 186
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=44.64 E-value=19 Score=32.07 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=6.7
Q ss_pred cCCCCCCceEEEecC
Q 017858 259 FTKMPKLRFLKFYRS 273 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~ 273 (365)
+-+++.|+..+||.|
T Consensus 88 Llkcp~l~~v~LSDN 102 (388)
T COG5238 88 LLKCPRLQKVDLSDN 102 (388)
T ss_pred HhcCCcceeeecccc
Confidence 344444444444333
No 187
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=43.80 E-value=3e+02 Score=26.39 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=68.0
Q ss_pred EEEEEeCCCCh-----------HhHHHHHccCCCCCCCcEEEEEeCchhHHHhc------CccceEEeCCCCHHHHHHHH
Q 017858 3 VLIVFDDVTCF-----------SQIESLIGSLDWLTPVSRIIITTRNKQVLRNW------GVRKIYEMKALEYHHAIRLF 65 (365)
Q Consensus 3 ~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~------~~~~~~~l~~L~~~e~~~L~ 65 (365)
=+||+||.-.. .+|...... ++=.+||++|-+....... ..-+.+.|...+++.|....
T Consensus 150 PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV 225 (431)
T PF10443_consen 150 PVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYV 225 (431)
T ss_pred CEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHH
Confidence 37999998532 235544432 3445788888776554432 12257899999999999999
Q ss_pred HHhhhcCCCC-------------C-----ccHHHHHHHHHHHcCCCchhHHHHhHhhccc
Q 017858 66 SRHAFKQNHP-------------D-----VGYEELSCKVMKYAQGVPLALKVLGCFLHKR 107 (365)
Q Consensus 66 ~~~~~~~~~~-------------~-----~~~~~~~~~i~~~c~glPlai~~~~~~l~~~ 107 (365)
..+....... . ..........++..||==.-+..+++.++.-
T Consensus 226 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 226 LSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred HHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 9988543110 0 1234456677888899999999888888763
No 188
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.45 E-value=55 Score=32.16 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=52.0
Q ss_pred EEEEeCCCChHhHHHHHc------------cCC---CCCCCcEEEEEeCchhHHHhcCc----cceEEeCCCCH-HHHHH
Q 017858 4 LIVFDDVTCFSQIESLIG------------SLD---WLTPVSRIIITTRNKQVLRNWGV----RKIYEMKALEY-HHAIR 63 (365)
Q Consensus 4 LlVlDdv~~~~~~~~l~~------------~~~---~~~~gs~ilvTTR~~~v~~~~~~----~~~~~l~~L~~-~e~~~ 63 (365)
.||+||+...-+|-.+.| .++ ..++.--|+-||....+...|+- ...|+++.++. ++..+
T Consensus 601 iivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~ 680 (744)
T KOG0741|consen 601 IIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLE 680 (744)
T ss_pred EEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHH
Confidence 689999976544433332 232 22334446668888888887743 45799999997 67777
Q ss_pred HHHHhh-hcCCCCCccHHHHHHHHHHHc
Q 017858 64 LFSRHA-FKQNHPDVGYEELSCKVMKYA 90 (365)
Q Consensus 64 L~~~~~-~~~~~~~~~~~~~~~~i~~~c 90 (365)
.+...- |. +.+.+..+.+...+|
T Consensus 681 vl~~~n~fs----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 681 VLEELNIFS----DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHccCCC----cchhHHHHHHHhccc
Confidence 776642 22 334456666666666
No 189
>PRK14700 recombination factor protein RarA; Provisional
Probab=43.09 E-value=81 Score=28.54 Aligned_cols=68 Identities=21% Similarity=0.142 Sum_probs=43.8
Q ss_pred CCCcEEEE--EeCchhHHHh---cCccceEEeCCCCHHHHHHHHHHhhhcCC----CCCccHHHHHHHHHHHcCCCc
Q 017858 27 TPVSRIII--TTRNKQVLRN---WGVRKIYEMKALEYHHAIRLFSRHAFKQN----HPDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 27 ~~gs~ilv--TTR~~~v~~~---~~~~~~~~l~~L~~~e~~~L~~~~~~~~~----~~~~~~~~~~~~i~~~c~glP 94 (365)
..|.-++| ||.++...-. ..-.+++++++|+.++..+++.+..-... ....-.++....|++.|+|--
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDa 81 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDC 81 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHH
Confidence 45665555 6766643211 12236899999999999999998774211 111223467788999998874
No 190
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.71 E-value=39 Score=35.12 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=57.4
Q ss_pred EEEEEEeCCCC---hHhHH----HHHccCCCCCCCcEEEEEeCchhHHHhcCccceEEeCCCCHH-HHHHHHHHhhhcCC
Q 017858 2 KVLIVFDDVTC---FSQIE----SLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEMKALEYH-HAIRLFSRHAFKQN 73 (365)
Q Consensus 2 r~LlVlDdv~~---~~~~~----~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~l~~L~~~-e~~~L~~~~~~~~~ 73 (365)
+-|+++|..-. +.+-. .+...+. ..|+.+|+||-...+.........+.-..+..+ +... +.-+. ...
T Consensus 403 ~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Ykl-~~G 478 (771)
T TIGR01069 403 NSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYKL-LKG 478 (771)
T ss_pred CcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEEE-CCC
Confidence 45899999863 33222 2233332 357889999999887554322111111111111 1110 00011 011
Q ss_pred CCCccHHHHHHHHHHHcCCCchhHHHHhHhhcccCHHHHHHHHHHHh
Q 017858 74 HPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATDKLQ 120 (365)
Q Consensus 74 ~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~ 120 (365)
.+. ...|-+|++++ |+|-.|.--|..+.......+.++++++.
T Consensus 479 ~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 479 IPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred CCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 24577787777 88888887777776554555556655554
No 191
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=37.15 E-value=2e+02 Score=24.52 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=39.2
Q ss_pred EEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCch-hHHHhcCc--------------cceEEeCCCCHHHHHHHHHHh
Q 017858 6 VFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNWGV--------------RKIYEMKALEYHHAIRLFSRH 68 (365)
Q Consensus 6 VlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~~~--------------~~~~~l~~L~~~e~~~L~~~~ 68 (365)
|+|++... +..+.+...+-+-..++.+|+.|.+. .+...... .-.+.+++++.++..+.+...
T Consensus 59 iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~~ 138 (206)
T PRK08485 59 IVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKEL 138 (206)
T ss_pred EEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHHH
Confidence 56777643 44777776665545566555555554 33322211 014789999999999999873
No 192
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.60 E-value=35 Score=35.53 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=57.7
Q ss_pred EEEEEEeCCCC---hHhHH----HHHccCCCCCCCcEEEEEeCchhHHHhcCccce---EEeCCCCHHHHHHHHHHhhhc
Q 017858 2 KVLIVFDDVTC---FSQIE----SLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKI---YEMKALEYHHAIRLFSRHAFK 71 (365)
Q Consensus 2 r~LlVlDdv~~---~~~~~----~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~---~~l~~L~~~e~~~L~~~~~~~ 71 (365)
+-|+++|.... +.+-. .+...+. ..|+.+|+||....++........ ..+. ++. +...... .. .
T Consensus 408 ~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~l~~~Y-kl-~ 481 (782)
T PRK00409 408 NSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ETLRPTY-RL-L 481 (782)
T ss_pred CcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-CcCcEEE-EE-e
Confidence 45899999863 32222 2233232 347889999999887765432211 1111 111 1111000 01 1
Q ss_pred CCCCCccHHHHHHHHHHHcCCCchhHHHHhHhhcccCHHHHHHHHHHHh
Q 017858 72 QNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATDKLQ 120 (365)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~ 120 (365)
...+ . ...|-+|++.+ |+|-.|.--|..+-........++++++.
T Consensus 482 ~G~~-g--~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 482 IGIP-G--KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred eCCC-C--CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1111 1 24577787777 88888887777776555555666665554
No 193
>PRK05629 hypothetical protein; Validated
Probab=35.99 E-value=2.7e+02 Score=25.35 Aligned_cols=96 Identities=10% Similarity=0.068 Sum_probs=52.4
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe----CchhHHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCC
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT----RNKQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNH 74 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTT----R~~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~ 74 (365)
|=+||++|.... ...+.+...+.+..+.+.+|+++ +.+.+.... .....++..++.+.+......+.+-....
T Consensus 65 ~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~ 144 (318)
T PRK05629 65 DRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGV 144 (318)
T ss_pred ceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 346777876432 22344444444344555555444 222222222 12235666778888888888877744333
Q ss_pred CCccHHHHHHHHHHHcCCCchhHHH
Q 017858 75 PDVGYEELSCKVMKYAQGVPLALKV 99 (365)
Q Consensus 75 ~~~~~~~~~~~i~~~c~glPlai~~ 99 (365)
.-+ ++.+..+++.+|+-..++..
T Consensus 145 ~i~--~~A~~~L~~~~g~dl~~l~~ 167 (318)
T PRK05629 145 RPT--PDVVHALLEGVGSDLRELAS 167 (318)
T ss_pred CCC--HHHHHHHHHHHCccHHHHHH
Confidence 222 25667788888887766653
No 194
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=35.08 E-value=1.7e+02 Score=26.84 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=38.2
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHh
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRH 68 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~ 68 (365)
.+|+|++... +..+.+...+.+...++.+|++|.+.. +.... .-...+.+.+++.+++.+.+...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3455777643 334444444333234565677776653 33322 22357899999999998888654
No 195
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=33.54 E-value=1.6e+02 Score=27.91 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=39.0
Q ss_pred CCcEEEEEeCchhHHHh-c----CccceEEeCCCCHHHHHHHHHHhhhcCCCC-CccHHHHHHHHHHHcCCCc
Q 017858 28 PVSRIIITTRNKQVLRN-W----GVRKIYEMKALEYHHAIRLFSRHAFKQNHP-DVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 28 ~gs~ilvTTR~~~v~~~-~----~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~-~~~~~~~~~~i~~~c~glP 94 (365)
.+..||.||........ . ..+..+++++.+.++-.++|..+..+.... ... ...+++.+.|+-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 35667777766432221 1 234579999999999999999876433221 122 345666666654
No 196
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=31.82 E-value=14 Score=34.80 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=30.4
Q ss_pred CCCCcccEEEEeCCCCC---CCCC-CCCCCCceEEeccCCc-cc-----ccccccccCccCceecccccc
Q 017858 289 PGFAEVKYLHWYGYPLK---SLPS-NLSAKKLVLVEVPDSD-IE-----RLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~---~lp~-~~~l~~L~~L~l~~~~-l~-----~lp~~i~~l~~L~~L~l~~~~ 348 (365)
.+.+.|+-+++.++... ++-+ +.+.+.|+.|.+++|. ++ .+-..-..+..|..+.+++|.
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 33455556666555421 1211 2245667777776652 21 122233455667777777666
No 197
>CHL00176 ftsH cell division protein; Validated
Probab=31.67 E-value=3.8e+02 Score=27.33 Aligned_cols=90 Identities=10% Similarity=0.149 Sum_probs=53.3
Q ss_pred EEEEEEeCCCCh------------H----hHHHHHccCCC--CCCCcEEEEEeCchhHHHh-----cCccceEEeCCCCH
Q 017858 2 KVLIVFDDVTCF------------S----QIESLIGSLDW--LTPVSRIIITTRNKQVLRN-----WGVRKIYEMKALEY 58 (365)
Q Consensus 2 r~LlVlDdv~~~------------~----~~~~l~~~~~~--~~~gs~ilvTTR~~~v~~~-----~~~~~~~~l~~L~~ 58 (365)
.++|++|+++.. + .+..+...+.. ...+-.||.||........ ...+..+.++..+.
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence 468999999632 1 13334333221 2345567777766543221 12346789999999
Q ss_pred HHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCc
Q 017858 59 HHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 59 ~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (365)
++-.++|+.++..... . .......+++.+.|..
T Consensus 356 ~~R~~IL~~~l~~~~~-~--~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 356 EGRLDILKVHARNKKL-S--PDVSLELIARRTPGFS 388 (638)
T ss_pred HHHHHHHHHHHhhccc-c--hhHHHHHHHhcCCCCC
Confidence 9999999888743221 1 1234567778887743
No 198
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.89 E-value=29 Score=33.97 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=15.8
Q ss_pred CcccEEEEeCC--CCCCCCCCC--CCCCceEEeccCCcc
Q 017858 292 AEVKYLHWYGY--PLKSLPSNL--SAKKLVLVEVPDSDI 326 (365)
Q Consensus 292 ~~L~~L~l~~~--~i~~lp~~~--~l~~L~~L~l~~~~l 326 (365)
++|+.|+|++| .+..-++.- ....|+.|.+.+|.+
T Consensus 244 pklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 244 PKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred chhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 55555555555 233222211 133455555555544
No 199
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.38 E-value=1.9e+02 Score=28.78 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=29.6
Q ss_pred EEEEeCCCC---hHhHHHHHccCCCCCCCcEEEEEeCchhHHHhcC
Q 017858 4 LIVFDDVTC---FSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWG 46 (365)
Q Consensus 4 LlVlDdv~~---~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~ 46 (365)
-+|||-|+. -..-..+...+..-+.++.||+-|-.++||....
T Consensus 456 tlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad 501 (557)
T COG0497 456 TLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMAD 501 (557)
T ss_pred eEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhhc
Confidence 589999984 2233333333333467889999999999998753
No 200
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=29.34 E-value=2.3e+02 Score=27.90 Aligned_cols=89 Identities=12% Similarity=0.199 Sum_probs=57.6
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCch-hHHHh-cCccceEEeCCCCHHHHHHHHHHhhhcCCCCCccH
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~-~~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~ 79 (365)
..|+|.|... ..|+.+...+-+-..+...|+.|.+. .+-.. ..-.+.|.++.++.++-...+...+.......++
T Consensus 122 VyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~- 200 (515)
T COG2812 122 VYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEE- 200 (515)
T ss_pred EEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCH-
Confidence 5688999854 45888888776555566666655555 33222 2334689999999999988888887554443322
Q ss_pred HHHHHHHHHHcCCCc
Q 017858 80 EELSCKVMKYAQGVP 94 (365)
Q Consensus 80 ~~~~~~i~~~c~glP 94 (365)
+....|++...|..
T Consensus 201 -~aL~~ia~~a~Gs~ 214 (515)
T COG2812 201 -DALSLIARAAEGSL 214 (515)
T ss_pred -HHHHHHHHHcCCCh
Confidence 44555666666643
No 201
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=29.16 E-value=93 Score=24.13 Aligned_cols=84 Identities=10% Similarity=0.038 Sum_probs=54.6
Q ss_pred EEEEeCchhHHHhcCccceEEeCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCchhHHHHhHhhcccCHHH
Q 017858 32 IIITTRNKQVLRNWGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHKREKEV 111 (365)
Q Consensus 32 ilvTTR~~~v~~~~~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~ 111 (365)
.+|.+|... ++..........-+++..-+....-++..+=-+.+.+..+..+.|....||+.-.|..+++.-...+..+
T Consensus 26 kVvSvRlr~-AE~esfs~q~~~lGl~~n~alRVavrri~GFLEiDa~tr~~l~~il~sIg~la~Nin~i~~Aa~~~~~pd 104 (147)
T PF07328_consen 26 KVVSVRLRS-AEYESFSAQARELGLSDNMALRVAVRRIGGFLEIDAETRQKLEDILRSIGGLATNINQILKAANRTPRPD 104 (147)
T ss_pred eEEeehhhH-HHHHHHHHHHHHhCCchhhHHHHHHHHHcchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 556777653 2222223344555677777877777777554455566677788888889999988888888777654444
Q ss_pred HHHHH
Q 017858 112 WESAT 116 (365)
Q Consensus 112 w~~~~ 116 (365)
+..+.
T Consensus 105 ~e~f~ 109 (147)
T PF07328_consen 105 YEAFR 109 (147)
T ss_pred HHHHH
Confidence 44443
No 202
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=29.09 E-value=17 Score=34.84 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=7.0
Q ss_pred CCCceEEeccCC
Q 017858 313 AKKLVLVEVPDS 324 (365)
Q Consensus 313 l~~L~~L~l~~~ 324 (365)
+++|+.|++++|
T Consensus 294 ~~~L~~L~l~~c 305 (482)
T KOG1947|consen 294 CPSLRELDLSGC 305 (482)
T ss_pred cCcccEEeeecC
Confidence 455666666655
No 203
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=28.81 E-value=75 Score=26.22 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=23.2
Q ss_pred EEEEeCCCCh-----HhHHHHHccCCCCCCCcEEEEEeCchh
Q 017858 4 LIVFDDVTCF-----SQIESLIGSLDWLTPVSRIIITTRNKQ 40 (365)
Q Consensus 4 LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTTR~~~ 40 (365)
|+|||.+-.. -..+.+...+....++..||+|-|+..
T Consensus 100 lvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 100 LVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred EEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 7899998521 112333333433456778999999874
No 204
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=28.70 E-value=1.3e+02 Score=22.60 Aligned_cols=10 Identities=10% Similarity=0.521 Sum_probs=8.8
Q ss_pred EEEEEEeCCC
Q 017858 2 KVLIVFDDVT 11 (365)
Q Consensus 2 r~LlVlDdv~ 11 (365)
+.+|++||++
T Consensus 59 ~~vl~iDe~d 68 (132)
T PF00004_consen 59 PCVLFIDEID 68 (132)
T ss_dssp SEEEEEETGG
T ss_pred ceeeeeccch
Confidence 5899999997
No 205
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=28.49 E-value=61 Score=27.14 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=25.3
Q ss_pred EEEEeCCC-----ChHhHHHHHccCCCCCCCcEEEEEeCchh
Q 017858 4 LIVFDDVT-----CFSQIESLIGSLDWLTPVSRIIITTRNKQ 40 (365)
Q Consensus 4 LlVlDdv~-----~~~~~~~l~~~~~~~~~gs~ilvTTR~~~ 40 (365)
|+|||.+. +.-.++.+...+........||+|-|...
T Consensus 125 lviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap 166 (198)
T COG2109 125 LVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAP 166 (198)
T ss_pred EEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCC
Confidence 78999884 33335555555554556788999999863
No 206
>PRK08116 hypothetical protein; Validated
Probab=28.43 E-value=34 Score=30.48 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=19.9
Q ss_pred EEEEeCCC--ChHhHH--HHHccCCCC-CCCcEEEEEeCch
Q 017858 4 LIVFDDVT--CFSQIE--SLIGSLDWL-TPVSRIIITTRNK 39 (365)
Q Consensus 4 LlVlDdv~--~~~~~~--~l~~~~~~~-~~gs~ilvTTR~~ 39 (365)
||||||+. ...+|. .+...+... ..|..+||||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 79999994 223332 233322211 2455699999654
No 207
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=26.85 E-value=4.2e+02 Score=25.17 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=50.4
Q ss_pred EEEEEEeCCCCh------------Hh----HHHHHccCCC--CCCCcEEEEEeCchhHHHh--c---CccceEEeCCCCH
Q 017858 2 KVLIVFDDVTCF------------SQ----IESLIGSLDW--LTPVSRIIITTRNKQVLRN--W---GVRKIYEMKALEY 58 (365)
Q Consensus 2 r~LlVlDdv~~~------------~~----~~~l~~~~~~--~~~gs~ilvTTR~~~v~~~--~---~~~~~~~l~~L~~ 58 (365)
..+|++|+++.. .. +..+...+.. ...+..||.||........ . ..+..+++...+.
T Consensus 239 P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 239 PSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred CeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCH
Confidence 468999997632 11 2233332221 2345678888876543322 1 2345789999999
Q ss_pred HHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCc
Q 017858 59 HHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 59 ~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (365)
++-.++|......... .++ -...++++...|+.
T Consensus 319 ~~R~~Il~~~~~~~~l-~~d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 319 RQKRLIFQTITSKMNL-SEE--VDLEDFVSRPEKIS 351 (398)
T ss_pred HHHHHHHHHHHhcCCC-Ccc--cCHHHHHHHcCCCC
Confidence 9988888876532221 111 12345566666664
No 208
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=26.46 E-value=1.8e+02 Score=25.82 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=38.6
Q ss_pred EEeCCCCHHHHHHHHHHhhhcCCCCCccH-HHHHHHHHHHcCCCchhHHHHhH
Q 017858 51 YEMKALEYHHAIRLFSRHAFKQNHPDVGY-EELSCKVMKYAQGVPLALKVLGC 102 (365)
Q Consensus 51 ~~l~~L~~~e~~~L~~~~~~~~~~~~~~~-~~~~~~i~~~c~glPlai~~~~~ 102 (365)
|++.|++.++....++.+..+...+.+-+ ......|..+..|.|.+|..++.
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 89999999998888888775544333322 35567788889999999876654
No 209
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.29 E-value=60 Score=30.40 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=24.7
Q ss_pred EEEEEeCCCCh---HhHHHHHccCCCCCCCcEEEEEeCchhHH
Q 017858 3 VLIVFDDVTCF---SQIESLIGSLDWLTPVSRIIITTRNKQVL 42 (365)
Q Consensus 3 ~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 42 (365)
-+++|||+-.. ...+.+...+... |..|++||.+....
T Consensus 304 pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~ 344 (365)
T TIGR00611 304 PILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHL 344 (365)
T ss_pred CEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhc
Confidence 47999999744 3344555555422 56899999877543
No 210
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=26.02 E-value=4.1e+02 Score=26.01 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=38.3
Q ss_pred CCcEEEEEeCchhHHH-----hcCccceEEeCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCc
Q 017858 28 PVSRIIITTRNKQVLR-----NWGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 28 ~gs~ilvTTR~~~v~~-----~~~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (365)
.+-.||.||....... ....+..+.++..+.++-.++|.......... .+ .....+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cc--hhHHHHHHhCCCCC
Confidence 3455666776543211 11234678999999999899988876332221 11 23457778887754
No 211
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=25.85 E-value=96 Score=26.07 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=24.0
Q ss_pred EEEEeCCCChH-----hHHHHHccCCCCCCCcEEEEEeCchh
Q 017858 4 LIVFDDVTCFS-----QIESLIGSLDWLTPVSRIIITTRNKQ 40 (365)
Q Consensus 4 LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~ilvTTR~~~ 40 (365)
|+|||.+-..- ..+.+...+.....+..||+|-|+..
T Consensus 118 lvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 118 LVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred EEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 79999985321 23444444444456778999999873
No 212
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.27 E-value=2e+02 Score=25.60 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=24.7
Q ss_pred EEEEeCCC---ChHhHHHHHccCCCCCCCcEEEEEeCchhHHHh
Q 017858 4 LIVFDDVT---CFSQIESLIGSLDWLTPVSRIIITTRNKQVLRN 44 (365)
Q Consensus 4 LlVlDdv~---~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~ 44 (365)
++++|... +......+...+.....+..||++|.+..+...
T Consensus 195 vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~ 238 (276)
T cd03241 195 TLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAM 238 (276)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHh
Confidence 67889875 333333333333322335679999999876543
No 213
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=25.27 E-value=1.4e+02 Score=19.23 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=19.5
Q ss_pred eCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHH
Q 017858 53 MKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKV 86 (365)
Q Consensus 53 l~~L~~~e~~~L~~~~~~~~~~~~~~~~~~~~~i 86 (365)
..++++++|++++.+.+...+. .+.++|..|
T Consensus 25 ~~g~~e~~A~~~Lr~~Am~~~~---~l~~vA~~i 55 (56)
T PF03861_consen 25 RYGLSEDEAYRLLRRQAMRRRR---SLADVAEEI 55 (56)
T ss_dssp HHT--HHHHHHHHHHHHHHCTS----HHHHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHcCC---CHHHHHHHH
Confidence 3468999999999999855444 334555554
No 214
>PRK08181 transposase; Validated
Probab=24.55 E-value=40 Score=30.04 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEeCCCCh----HhHHHHHccCCCC-CCCcEEEEEeCch
Q 017858 4 LIVFDDVTCF----SQIESLIGSLDWL-TPVSRIIITTRNK 39 (365)
Q Consensus 4 LlVlDdv~~~----~~~~~l~~~~~~~-~~gs~ilvTTR~~ 39 (365)
|||+||+... ...+.+...+... ..+ .+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 8999999632 1122333333211 223 599999776
No 215
>PRK10869 recombination and repair protein; Provisional
Probab=24.33 E-value=3e+02 Score=27.46 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=25.5
Q ss_pred EEEEeCCCC---hHhHHHHHccCCCCCCCcEEEEEeCchhHHHh
Q 017858 4 LIVFDDVTC---FSQIESLIGSLDWLTPVSRIIITTRNKQVLRN 44 (365)
Q Consensus 4 LlVlDdv~~---~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~ 44 (365)
++|||.+.. ......+...+.....+..||+.|-...++..
T Consensus 455 ~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ 498 (553)
T PRK10869 455 ALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGC 498 (553)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 689999873 23333333333322345679999999988854
No 216
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=21.94 E-value=2.8e+02 Score=25.29 Aligned_cols=47 Identities=21% Similarity=0.068 Sum_probs=32.5
Q ss_pred eEEeCCCCHHHHHHHHHHhhhcCCCCC-ccHHHHHHHHHHHcCCCchh
Q 017858 50 IYEMKALEYHHAIRLFSRHAFKQNHPD-VGYEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 50 ~~~l~~L~~~e~~~L~~~~~~~~~~~~-~~~~~~~~~i~~~c~glPla 96 (365)
++++++++.+|+..++.-+.-..-... ...+...+++.-..+|.|.-
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 789999999999999987763322211 22335566777777888853
No 217
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=21.66 E-value=41 Score=31.89 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=43.7
Q ss_pred CCCCcccEEEEeCCC-CC-----CCCCCCC-CCCceEEeccCCcc-c-ccccccccCccCceeccccccccc
Q 017858 289 PGFAEVKYLHWYGYP-LK-----SLPSNLS-AKKLVLVEVPDSDI-E-RLWHCVKHYSKLNQIIHAACNMLT 351 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~-i~-----~lp~~~~-l~~L~~L~l~~~~l-~-~lp~~i~~l~~L~~L~l~~~~~l~ 351 (365)
...+.||.|+++++. ++ .+..+.+ +..|..+.|+++.. . ..-+.....++|+.+++-.|....
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 566889999998775 22 2344443 88999999999854 2 223345667789999888887554
No 218
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=21.08 E-value=2.7e+02 Score=27.52 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=41.7
Q ss_pred EEEEEEeCCCCh---------Hh-----HHHHHccCCCC--CCCcEEEEEeCchhHHHh-----cCccceEEeCCCCHHH
Q 017858 2 KVLIVFDDVTCF---------SQ-----IESLIGSLDWL--TPVSRIIITTRNKQVLRN-----WGVRKIYEMKALEYHH 60 (365)
Q Consensus 2 r~LlVlDdv~~~---------~~-----~~~l~~~~~~~--~~gs~ilvTTR~~~v~~~-----~~~~~~~~l~~L~~~e 60 (365)
+++|+||+++.. .+ ...+...+... ..+..||.||-....... ...+..++++..+.++
T Consensus 290 p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~ 369 (512)
T TIGR03689 290 PVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEA 369 (512)
T ss_pred CceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHH
Confidence 578999999732 11 23444333321 234456666655433221 1234568999999999
Q ss_pred HHHHHHHhh
Q 017858 61 AIRLFSRHA 69 (365)
Q Consensus 61 ~~~L~~~~~ 69 (365)
..++|.++.
T Consensus 370 r~~Il~~~l 378 (512)
T TIGR03689 370 AADIFSKYL 378 (512)
T ss_pred HHHHHHHHh
Confidence 999999887
Done!