Query 017858
Match_columns 365
No_of_seqs 284 out of 2194
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-33 3.8E-38 276.6 9.7 201 1-211 243-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-29 5.8E-34 269.4 13.8 199 1-210 236-452 (1249)
3 1vt4_I APAF-1 related killer D 99.9 2.1E-27 7.1E-32 238.3 10.9 180 1-203 244-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 5.3E-26 1.8E-30 224.7 13.2 195 1-207 236-449 (591)
5 3e6j_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 110.1 11.2 116 237-364 40-162 (229)
6 2v9t_B SLIT homolog 2 protein 99.3 1.6E-11 5.4E-16 105.4 10.8 115 238-364 33-155 (220)
7 4fcg_A Uncharacterized protein 99.3 8E-12 2.7E-16 114.0 7.9 75 289-364 203-280 (328)
8 2o6s_A Variable lymphocyte rec 99.2 5.2E-11 1.8E-15 101.1 11.2 115 238-364 29-151 (208)
9 3m19_A Variable lymphocyte rec 99.2 4.6E-11 1.6E-15 104.6 11.1 118 235-364 57-182 (251)
10 3m19_A Variable lymphocyte rec 99.2 7.3E-11 2.5E-15 103.3 10.9 115 238-364 36-158 (251)
11 2v70_A SLIT-2, SLIT homolog 2 99.2 5.5E-11 1.9E-15 102.0 9.7 114 240-364 35-156 (220)
12 1p9a_G Platelet glycoprotein I 99.2 7.2E-11 2.5E-15 105.7 10.1 95 260-364 74-175 (290)
13 4b8c_D Glucose-repressible alc 99.2 2E-11 6.8E-16 122.9 6.7 101 254-364 215-319 (727)
14 2je0_A Acidic leucine-rich nuc 99.2 1.8E-11 6.3E-16 98.1 5.2 118 236-364 16-143 (149)
15 2o6q_A Variable lymphocyte rec 99.2 1.3E-10 4.6E-15 102.7 11.2 116 237-364 85-208 (270)
16 2ell_A Acidic leucine-rich nuc 99.2 7.8E-11 2.7E-15 96.4 8.9 118 236-364 23-150 (168)
17 4g8a_A TOLL-like receptor 4; l 99.2 4.2E-11 1.4E-15 118.5 8.5 117 238-364 53-176 (635)
18 4fcg_A Uncharacterized protein 99.2 6.1E-11 2.1E-15 108.1 8.8 117 236-364 182-304 (328)
19 1a9n_A U2A', U2A'; complex (nu 99.2 5.1E-11 1.7E-15 98.4 7.5 116 235-364 17-143 (176)
20 2o6q_A Variable lymphocyte rec 99.1 2.5E-10 8.5E-15 101.0 11.1 117 236-364 60-184 (270)
21 1p9a_G Platelet glycoprotein I 99.1 2.3E-10 7.9E-15 102.4 10.9 117 235-364 75-198 (290)
22 2wfh_A SLIT homolog 2 protein 99.1 2.9E-10 9.9E-15 95.4 10.1 60 289-348 75-137 (193)
23 1ogq_A PGIP-2, polygalacturona 99.1 1.3E-10 4.4E-15 105.2 8.5 120 237-364 50-177 (313)
24 3rfs_A Internalin B, repeat mo 99.1 4.7E-10 1.6E-14 99.3 11.2 118 235-364 83-208 (272)
25 4ezg_A Putative uncharacterize 99.1 2E-10 6.8E-15 96.6 8.0 73 289-364 109-184 (197)
26 1w8a_A SLIT protein; signaling 99.1 5.2E-10 1.8E-14 93.7 9.9 82 259-348 50-137 (192)
27 3e6j_A Variable lymphocyte rec 99.1 4.7E-10 1.6E-14 96.7 9.8 92 263-364 40-138 (229)
28 2xot_A Amphoterin-induced prot 99.1 3.6E-10 1.2E-14 104.4 9.6 93 254-356 54-153 (361)
29 3rfs_A Internalin B, repeat mo 99.1 7.5E-10 2.6E-14 98.0 10.7 115 236-364 62-184 (272)
30 1dce_A Protein (RAB geranylger 99.1 2.8E-10 9.5E-15 111.2 8.5 111 239-364 443-563 (567)
31 3vq2_A TLR4, TOLL-like recepto 99.0 4.7E-10 1.6E-14 110.7 10.2 117 238-364 33-156 (606)
32 2o6r_A Variable lymphocyte rec 99.0 1.1E-09 3.7E-14 90.3 10.7 101 238-348 29-135 (177)
33 1ozn_A Reticulon 4 receptor; N 99.0 8.2E-10 2.8E-14 98.4 10.2 119 236-364 79-204 (285)
34 1ozn_A Reticulon 4 receptor; N 99.0 1.1E-09 3.7E-14 97.5 10.8 118 235-364 103-228 (285)
35 2z62_A TOLL-like receptor 4, v 99.0 6E-10 2E-14 98.8 9.0 86 255-348 68-160 (276)
36 2xwt_C Thyrotropin receptor; s 99.0 3.8E-10 1.3E-14 97.9 7.4 86 254-347 46-140 (239)
37 2r9u_A Variable lymphocyte rec 99.0 1.2E-09 3.9E-14 90.1 9.9 83 263-355 33-121 (174)
38 3zyi_A Leucine-rich repeat-con 99.0 7.5E-10 2.6E-14 105.4 10.0 85 254-346 90-180 (452)
39 3o53_A Protein LRIM1, AGAP0063 99.0 2.4E-10 8.2E-15 103.6 6.2 116 237-364 120-240 (317)
40 2ell_A Acidic leucine-rich nuc 99.0 3.4E-10 1.1E-14 92.6 6.4 108 235-356 47-164 (168)
41 1xeu_A Internalin C; cellular 99.0 6.3E-10 2.1E-14 98.1 8.4 113 236-364 62-175 (263)
42 2o6r_A Variable lymphocyte rec 99.0 1.4E-09 4.9E-14 89.6 9.9 92 263-364 28-127 (177)
43 4ezg_A Putative uncharacterize 99.0 5E-10 1.7E-14 94.2 7.2 114 238-364 45-162 (197)
44 2wfh_A SLIT homolog 2 protein 99.0 1.1E-09 3.7E-14 91.8 9.2 92 263-364 31-129 (193)
45 2o6s_A Variable lymphocyte rec 99.0 1.7E-09 5.8E-14 91.6 10.4 104 235-348 50-159 (208)
46 3o6n_A APL1; leucine-rich repe 99.0 7.3E-10 2.5E-14 103.3 8.8 60 289-348 114-176 (390)
47 3zyj_A Leucine-rich repeat-con 99.0 1E-09 3.5E-14 104.1 9.8 100 255-364 104-210 (440)
48 3zyi_A Leucine-rich repeat-con 99.0 1.4E-09 4.8E-14 103.5 10.6 74 289-364 215-293 (452)
49 1xeu_A Internalin C; cellular 99.0 1.6E-09 5.4E-14 95.5 10.0 99 235-348 83-183 (263)
50 3zyj_A Leucine-rich repeat-con 99.0 1.5E-09 5E-14 103.0 10.5 97 258-364 180-282 (440)
51 3oja_B Anopheles plasmodium-re 99.0 8.2E-10 2.8E-14 108.9 9.0 86 255-348 91-182 (597)
52 2v9t_B SLIT homolog 2 protein 99.0 1.8E-09 6.1E-14 92.5 9.8 104 235-348 54-163 (220)
53 2z80_A TOLL-like receptor 2, v 99.0 4.2E-10 1.4E-14 103.5 6.2 100 255-363 92-200 (353)
54 4b8c_D Glucose-repressible alc 99.0 2.7E-10 9.2E-15 114.7 5.2 110 235-356 222-334 (727)
55 1h6u_A Internalin H; cell adhe 99.0 1.3E-09 4.3E-14 98.4 9.0 114 236-364 84-198 (308)
56 1h6t_A Internalin B; cell adhe 99.0 1.1E-09 3.7E-14 98.0 8.5 114 235-364 88-203 (291)
57 2v70_A SLIT-2, SLIT homolog 2 99.0 1.7E-09 5.7E-14 92.6 9.3 103 236-348 56-164 (220)
58 2z63_A TOLL-like receptor 4, v 99.0 1.1E-09 3.7E-14 107.1 9.1 60 289-348 97-160 (570)
59 1h6t_A Internalin B; cell adhe 99.0 1.3E-09 4.4E-14 97.5 8.7 100 235-348 110-211 (291)
60 1dce_A Protein (RAB geranylger 99.0 5.8E-10 2E-14 109.0 6.9 90 264-364 442-536 (567)
61 1xku_A Decorin; proteoglycan, 99.0 2.1E-09 7.1E-14 97.8 9.9 117 237-355 145-279 (330)
62 3g39_A Variable lymphocyte rec 99.0 2.6E-09 9E-14 87.5 9.5 78 263-348 30-113 (170)
63 3oja_A Leucine-rich immune mol 99.0 5.8E-10 2E-14 107.2 6.2 116 237-364 120-240 (487)
64 2id5_A Lingo-1, leucine rich r 98.9 2.4E-09 8.1E-14 102.5 10.3 115 239-364 34-155 (477)
65 2xot_A Amphoterin-induced prot 98.9 2E-09 7E-14 99.3 9.5 115 235-361 62-187 (361)
66 1a9n_A U2A', U2A'; complex (nu 98.9 8.2E-10 2.8E-14 91.1 6.1 97 257-364 13-116 (176)
67 1h6u_A Internalin H; cell adhe 98.9 1.7E-09 5.7E-14 97.6 8.5 115 234-364 104-220 (308)
68 3v47_A TOLL-like receptor 5B a 98.9 1.9E-09 6.4E-14 102.5 9.3 115 238-364 276-398 (455)
69 2xwt_C Thyrotropin receptor; s 98.9 1.6E-09 5.6E-14 93.8 8.0 101 237-347 80-189 (239)
70 2r9u_A Variable lymphocyte rec 98.9 2.9E-09 1E-13 87.6 9.1 89 266-364 15-108 (174)
71 3g39_A Variable lymphocyte rec 98.9 3.5E-09 1.2E-13 86.8 9.1 90 265-364 11-105 (170)
72 2je0_A Acidic leucine-rich nuc 98.9 1E-09 3.5E-14 87.8 5.2 93 261-364 15-116 (149)
73 1w8a_A SLIT protein; signaling 98.9 3.4E-09 1.2E-13 88.7 8.6 92 264-364 30-129 (192)
74 2z62_A TOLL-like receptor 4, v 98.9 2.4E-09 8.2E-14 94.9 7.7 101 254-364 43-152 (276)
75 2z80_A TOLL-like receptor 2, v 98.9 1.6E-09 5.6E-14 99.5 6.6 116 238-364 53-177 (353)
76 3j0a_A TOLL-like receptor 5; m 98.9 2.6E-09 8.8E-14 109.6 8.7 118 237-364 24-151 (844)
77 2z81_A CD282 antigen, TOLL-lik 98.9 1.3E-09 4.4E-14 106.2 6.1 86 255-348 42-134 (549)
78 4eco_A Uncharacterized protein 98.9 3.6E-09 1.2E-13 105.1 9.2 116 238-364 434-569 (636)
79 1ogq_A PGIP-2, polygalacturona 98.9 1.9E-09 6.6E-14 97.4 6.6 99 256-364 118-224 (313)
80 1ziw_A TOLL-like receptor 3; i 98.9 3.8E-09 1.3E-13 105.7 9.3 117 237-364 25-148 (680)
81 1m9s_A Internalin B; cell inva 98.9 3.1E-09 1.1E-13 104.5 8.4 94 258-363 104-199 (605)
82 2z66_A Variable lymphocyte rec 98.9 4.2E-09 1.4E-13 94.7 8.7 98 257-364 120-226 (306)
83 4g8a_A TOLL-like receptor 4; l 98.9 2.4E-09 8.1E-14 105.8 7.6 116 234-360 73-196 (635)
84 2z66_A Variable lymphocyte rec 98.9 8E-09 2.7E-13 92.8 10.2 119 235-364 124-251 (306)
85 3vq2_A TLR4, TOLL-like recepto 98.9 2.9E-09 9.8E-14 105.0 7.7 118 235-363 54-179 (606)
86 2ft3_A Biglycan; proteoglycan, 98.9 1.3E-08 4.5E-13 92.6 11.3 99 239-348 56-158 (332)
87 1m9s_A Internalin B; cell inva 98.9 4.2E-09 1.4E-13 103.6 8.4 114 236-364 64-178 (605)
88 3v47_A TOLL-like receptor 5B a 98.8 5.3E-09 1.8E-13 99.4 8.8 118 237-364 30-157 (455)
89 4fmz_A Internalin; leucine ric 98.8 4.9E-09 1.7E-13 95.9 8.2 96 259-364 84-180 (347)
90 4ecn_A Leucine-rich repeat pro 98.8 5.6E-09 1.9E-13 106.5 9.4 116 238-364 674-809 (876)
91 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 5.5E-09 1.9E-13 102.1 9.0 101 237-348 52-157 (562)
92 1ziw_A TOLL-like receptor 3; i 98.8 8.9E-09 3E-13 103.0 10.4 99 256-364 473-587 (680)
93 3o6n_A APL1; leucine-rich repe 98.8 1.1E-08 3.7E-13 95.3 10.1 116 237-364 45-168 (390)
94 3o53_A Protein LRIM1, AGAP0063 98.8 8.6E-10 2.9E-14 99.9 2.6 116 236-361 143-262 (317)
95 3t6q_A CD180 antigen; protein- 98.8 8.5E-09 2.9E-13 101.6 9.9 114 239-364 35-156 (606)
96 3oja_B Anopheles plasmodium-re 98.8 9.2E-09 3.2E-13 101.4 10.1 104 252-364 64-174 (597)
97 2id5_A Lingo-1, leucine rich r 98.8 5.6E-09 1.9E-13 99.9 8.3 74 289-364 125-203 (477)
98 2z7x_B TOLL-like receptor 1, v 98.8 5.2E-09 1.8E-13 101.2 8.1 117 237-364 348-471 (520)
99 2ft3_A Biglycan; proteoglycan, 98.8 4.2E-09 1.4E-13 95.9 7.0 65 289-355 214-280 (332)
100 2z7x_B TOLL-like receptor 1, v 98.8 4.2E-09 1.4E-13 101.9 7.4 113 237-363 21-138 (520)
101 2z63_A TOLL-like receptor 4, v 98.8 4.5E-09 1.6E-13 102.7 7.6 116 238-364 29-152 (570)
102 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 9.5E-09 3.3E-13 100.5 9.7 72 290-364 426-500 (562)
103 3rgz_A Protein brassinosteroid 98.8 6.1E-09 2.1E-13 105.7 8.4 75 289-364 463-541 (768)
104 2qen_A Walker-type ATPase; unk 98.8 4.5E-08 1.5E-12 89.5 13.4 189 2-204 129-349 (350)
105 2z81_A CD282 antigen, TOLL-lik 98.8 7.2E-09 2.4E-13 100.9 8.3 119 236-364 360-500 (549)
106 3rgz_A Protein brassinosteroid 98.8 6.1E-09 2.1E-13 105.7 8.0 94 255-356 624-722 (768)
107 4eco_A Uncharacterized protein 98.8 1E-08 3.4E-13 101.9 9.0 94 261-364 431-539 (636)
108 1xku_A Decorin; proteoglycan, 98.8 1.7E-08 5.7E-13 91.8 9.9 86 254-348 67-156 (330)
109 4glp_A Monocyte differentiatio 98.8 4E-09 1.4E-13 95.1 5.3 71 290-364 222-297 (310)
110 1o6v_A Internalin A; bacterial 98.8 7.4E-09 2.5E-13 98.8 7.1 94 259-364 64-159 (466)
111 1wwl_A Monocyte differentiatio 98.8 3.7E-09 1.3E-13 95.5 4.7 71 290-364 226-299 (312)
112 3oja_A Leucine-rich immune mol 98.8 2.1E-09 7.1E-14 103.3 2.9 117 235-361 142-262 (487)
113 2fna_A Conserved hypothetical 98.7 2.1E-08 7.1E-13 91.9 8.9 190 2-203 138-356 (357)
114 4fmz_A Internalin; leucine ric 98.7 2.4E-08 8.2E-13 91.3 8.5 115 234-364 85-202 (347)
115 1ds9_A Outer arm dynein; leuci 98.7 1.4E-10 4.8E-15 97.6 -6.1 82 258-348 65-151 (198)
116 4ecn_A Leucine-rich repeat pro 98.7 2.8E-08 9.7E-13 101.4 9.6 111 236-358 696-826 (876)
117 2ifg_A High affinity nerve gro 98.7 2.4E-08 8.3E-13 91.4 8.3 88 252-348 22-114 (347)
118 3cvr_A Invasion plasmid antige 98.7 3E-08 1E-12 96.7 8.2 55 292-348 180-241 (571)
119 3bz5_A Internalin-J, INLJ; leu 98.7 5.4E-08 1.8E-12 92.6 9.7 91 259-363 81-172 (457)
120 4glp_A Monocyte differentiatio 98.7 7.7E-09 2.6E-13 93.2 3.4 113 235-356 143-268 (310)
121 3t6q_A CD180 antigen; protein- 98.7 3.1E-08 1.1E-12 97.6 7.9 119 235-364 55-180 (606)
122 3bz5_A Internalin-J, INLJ; leu 98.7 2.6E-08 8.9E-13 94.8 6.7 109 237-364 42-151 (457)
123 1wwl_A Monocyte differentiatio 98.6 2.6E-08 8.9E-13 89.9 5.8 105 234-348 198-307 (312)
124 1o6v_A Internalin A; bacterial 98.6 7.3E-08 2.5E-12 91.9 8.4 58 290-348 307-364 (466)
125 1ds9_A Outer arm dynein; leuci 98.6 2.3E-10 8E-15 96.3 -8.2 97 257-364 42-143 (198)
126 3g06_A SSPH2 (leucine-rich rep 98.6 1.2E-07 4.2E-12 93.4 9.1 66 292-364 221-287 (622)
127 3g06_A SSPH2 (leucine-rich rep 98.6 1.7E-07 5.7E-12 92.4 9.9 72 262-347 80-151 (622)
128 2ifg_A High affinity nerve gro 98.6 9.7E-08 3.3E-12 87.3 7.3 78 282-361 20-104 (347)
129 1jl5_A Outer protein YOPM; leu 98.5 3.2E-07 1.1E-11 87.2 10.3 110 238-356 132-254 (454)
130 4ay9_X Follicle-stimulating ho 98.5 1.4E-07 4.9E-12 86.4 7.5 69 292-363 177-248 (350)
131 3cvr_A Invasion plasmid antige 98.5 3.3E-07 1.1E-11 89.3 9.4 105 238-364 121-233 (571)
132 1jl5_A Outer protein YOPM; leu 98.5 3.6E-07 1.2E-11 86.9 9.5 75 263-348 131-206 (454)
133 3j0a_A TOLL-like receptor 5; m 98.5 4.1E-07 1.4E-11 93.2 10.4 108 237-356 266-379 (844)
134 4ay9_X Follicle-stimulating ho 98.4 5.2E-07 1.8E-11 82.6 7.8 110 253-364 94-229 (350)
135 2ast_B S-phase kinase-associat 98.3 4.4E-08 1.5E-12 89.0 -1.7 121 236-364 141-275 (336)
136 1w5s_A Origin recognition comp 98.2 3.2E-06 1.1E-10 78.9 8.9 192 1-198 138-386 (412)
137 2ast_B S-phase kinase-associat 98.2 5.2E-08 1.8E-12 88.6 -3.8 122 234-364 115-250 (336)
138 2ca6_A RAN GTPase-activating p 98.2 7.9E-08 2.7E-12 89.3 -3.1 109 237-348 187-314 (386)
139 2ca6_A RAN GTPase-activating p 98.0 7.2E-07 2.5E-11 82.8 -0.4 123 237-364 159-306 (386)
140 3sb4_A Hypothetical leucine ri 97.9 1.6E-05 5.4E-10 72.0 6.6 91 262-364 225-324 (329)
141 1njg_A DNA polymerase III subu 97.7 0.00017 5.7E-09 61.5 9.7 100 2-103 127-230 (250)
142 3rw6_A Nuclear RNA export fact 97.6 4.3E-05 1.5E-09 66.8 3.8 80 260-344 167-258 (267)
143 3rw6_A Nuclear RNA export fact 97.5 4.6E-05 1.6E-09 66.6 3.7 65 289-355 167-237 (267)
144 3goz_A Leucine-rich repeat-con 97.5 1.1E-05 3.9E-10 74.0 -0.9 59 292-351 138-209 (362)
145 3goz_A Leucine-rich repeat-con 97.5 4.5E-05 1.5E-09 70.0 2.9 103 237-349 22-150 (362)
146 1z7x_W Ribonuclease inhibitor; 97.5 1.6E-05 5.6E-10 75.2 -0.3 104 237-348 28-153 (461)
147 2qby_B CDC6 homolog 3, cell di 97.4 0.005 1.7E-07 56.4 16.1 172 3-188 135-339 (384)
148 3sb4_A Hypothetical leucine ri 97.4 0.00043 1.5E-08 62.4 8.2 95 237-343 226-327 (329)
149 2ra8_A Uncharacterized protein 97.1 0.00015 5.2E-09 66.4 2.3 86 261-348 217-318 (362)
150 3ogk_B Coronatine-insensitive 97.1 3.9E-05 1.3E-09 75.0 -2.2 84 260-346 161-252 (592)
151 1z7x_W Ribonuclease inhibitor; 97.0 4.7E-05 1.6E-09 72.0 -2.2 108 237-348 3-124 (461)
152 3ogk_B Coronatine-insensitive 97.0 0.00021 7.1E-09 69.8 2.1 82 259-348 216-304 (592)
153 1fnn_A CDC6P, cell division co 96.9 0.0075 2.6E-07 55.3 12.1 202 2-210 126-387 (389)
154 2p1m_B Transport inhibitor res 96.9 6.2E-05 2.1E-09 73.6 -2.3 85 259-347 152-245 (594)
155 2qby_A CDC6 homolog 1, cell di 96.9 0.0067 2.3E-07 55.4 11.1 180 2-188 129-348 (386)
156 3un9_A NLR family member X1; l 96.9 0.00012 4.1E-09 67.4 -1.0 108 238-348 127-250 (372)
157 2chg_A Replication factor C sm 96.8 0.0038 1.3E-07 52.1 8.1 96 2-99 103-202 (226)
158 3un9_A NLR family member X1; l 96.7 0.00022 7.6E-09 65.6 -0.2 89 237-328 155-253 (372)
159 1io0_A Tropomodulin; LRR prote 96.6 0.00019 6.4E-09 59.2 -1.2 110 236-348 35-162 (185)
160 1io0_A Tropomodulin; LRR prote 96.5 0.00045 1.5E-08 56.8 0.2 89 257-348 30-134 (185)
161 1sxj_B Activator 1 37 kDa subu 96.5 0.0083 2.8E-07 53.4 8.4 99 2-102 108-211 (323)
162 2v1u_A Cell division control p 96.4 0.011 3.9E-07 54.0 9.3 177 1-188 130-351 (387)
163 3rfe_A Platelet glycoprotein I 96.4 0.0045 1.5E-07 47.6 5.6 45 282-326 19-67 (130)
164 4fdw_A Leucine rich hypothetic 96.3 0.0078 2.7E-07 55.8 7.7 71 289-364 268-348 (401)
165 3e4g_A ATP synthase subunit S, 96.3 0.0015 5.1E-08 53.0 2.1 80 264-351 62-153 (176)
166 2p1m_B Transport inhibitor res 96.2 0.00028 9.7E-09 68.8 -2.9 52 291-342 210-270 (594)
167 4fdw_A Leucine rich hypothetic 96.0 0.019 6.5E-07 53.2 8.6 57 289-346 177-235 (401)
168 2ra8_A Uncharacterized protein 95.5 0.0061 2.1E-07 55.7 2.8 107 236-351 171-292 (362)
169 3e4g_A ATP synthase subunit S, 95.4 0.005 1.7E-07 49.9 1.6 72 292-364 61-142 (176)
170 3rfe_A Platelet glycoprotein I 95.1 0.036 1.2E-06 42.4 5.5 50 297-347 13-65 (130)
171 4h09_A Hypothetical leucine ri 95.1 0.085 2.9E-06 48.1 9.1 81 256-346 256-342 (379)
172 1iqp_A RFCS; clamp loader, ext 94.9 0.093 3.2E-06 46.6 8.7 96 2-99 111-210 (327)
173 1jr3_A DNA polymerase III subu 94.6 0.14 4.8E-06 46.4 9.3 97 2-100 120-220 (373)
174 4fs7_A Uncharacterized protein 94.2 0.059 2E-06 49.5 5.8 95 256-364 290-391 (394)
175 2chq_A Replication factor C sm 94.1 0.4 1.4E-05 42.2 10.9 95 2-98 103-201 (319)
176 4h09_A Hypothetical leucine ri 94.1 0.17 5.7E-06 46.1 8.6 98 254-364 231-336 (379)
177 4gt6_A Cell surface protein; l 93.7 0.18 6E-06 46.3 8.0 82 256-348 281-368 (394)
178 4fs7_A Uncharacterized protein 93.5 0.23 7.8E-06 45.6 8.3 71 289-364 294-369 (394)
179 3bos_A Putative DNA replicatio 92.2 0.17 5.7E-06 42.5 5.1 94 3-98 106-214 (242)
180 4gt6_A Cell surface protein; l 91.7 0.39 1.3E-05 44.0 7.4 97 254-364 256-360 (394)
181 1a5t_A Delta prime, HOLB; zinc 91.0 1.2 4E-05 39.8 9.6 91 2-99 109-203 (334)
182 1d2n_A N-ethylmaleimide-sensit 90.7 1 3.6E-05 38.7 8.8 114 2-122 125-264 (272)
183 1sxj_A Activator 1 95 kDa subu 90.6 1.7 5.8E-05 41.4 10.8 98 2-103 149-255 (516)
184 1hqc_A RUVB; extended AAA-ATPa 90.4 0.93 3.2E-05 40.0 8.4 100 3-104 92-214 (324)
185 1sxj_E Activator 1 40 kDa subu 90.0 1 3.4E-05 40.4 8.4 95 3-98 136-234 (354)
186 2z4s_A Chromosomal replication 87.3 0.77 2.6E-05 42.8 5.7 92 3-97 196-302 (440)
187 1sxj_D Activator 1 41 kDa subu 86.0 2.4 8.3E-05 37.7 8.2 94 3-98 135-232 (353)
188 1jr3_D DNA polymerase III, del 85.0 3.8 0.00013 36.4 9.0 96 2-99 77-183 (343)
189 1pgv_A TMD-1, tropomodulin TMD 84.5 0.35 1.2E-05 39.7 1.6 109 237-348 41-168 (197)
190 2qz4_A Paraplegin; AAA+, SPG7, 79.0 16 0.00054 30.6 10.3 93 2-95 99-215 (262)
191 3h4m_A Proteasome-activating n 78.8 5.8 0.0002 34.0 7.5 88 3-93 112-222 (285)
192 3syl_A Protein CBBX; photosynt 78.6 5.2 0.00018 34.8 7.3 67 3-71 132-219 (309)
193 1xwi_A SKD1 protein; VPS4B, AA 75.7 24 0.00083 30.9 10.9 91 2-94 106-215 (322)
194 3eie_A Vacuolar protein sortin 74.7 21 0.00073 31.2 10.2 91 2-94 111-220 (322)
195 3uk6_A RUVB-like 2; hexameric 74.1 14 0.00048 32.9 9.0 89 3-97 191-299 (368)
196 2qp9_X Vacuolar protein sortin 72.7 31 0.0011 30.7 10.9 89 2-94 144-253 (355)
197 1l8q_A Chromosomal replication 70.7 12 0.00042 32.7 7.6 89 3-95 100-202 (324)
198 3d8b_A Fidgetin-like protein 1 69.9 24 0.00081 31.5 9.5 97 2-100 177-294 (357)
199 3u61_B DNA polymerase accessor 69.1 14 0.00048 32.3 7.6 91 2-96 106-211 (324)
200 2zan_A Vacuolar protein sortin 69.0 39 0.0013 31.2 11.0 91 2-94 228-337 (444)
201 1pgv_A TMD-1, tropomodulin TMD 66.4 1.5 5E-05 36.0 0.5 88 259-348 37-137 (197)
202 3vfd_A Spastin; ATPase, microt 66.3 43 0.0015 30.1 10.5 69 29-99 252-324 (389)
203 3pfi_A Holliday junction ATP-d 65.6 21 0.00073 31.2 8.2 94 3-98 108-224 (338)
204 3pvs_A Replication-associated 60.5 24 0.00082 32.7 7.7 95 2-98 107-212 (447)
205 1sxj_C Activator 1 40 kDa subu 59.9 32 0.0011 30.2 8.3 93 2-96 111-207 (340)
206 2gno_A DNA polymerase III, gam 56.3 11 0.00038 32.9 4.4 67 2-69 83-152 (305)
207 2c9o_A RUVB-like 1; hexameric 50.8 53 0.0018 30.3 8.4 88 4-97 298-406 (456)
208 4aby_A DNA repair protein RECN 47.9 26 0.00089 31.8 5.7 48 4-53 318-368 (415)
209 3b9p_A CG5977-PA, isoform A; A 43.8 1.5E+02 0.005 25.0 10.9 67 28-98 158-230 (297)
210 1g5t_A COB(I)alamin adenosyltr 42.9 16 0.00056 29.6 3.0 37 4-40 123-164 (196)
211 3te6_A Regulatory protein SIR3 42.8 37 0.0013 29.8 5.6 67 1-69 132-211 (318)
212 3cf0_A Transitional endoplasmi 36.0 1E+02 0.0035 26.3 7.4 91 2-96 109-223 (301)
213 1jbk_A CLPB protein; beta barr 35.2 9.1 0.00031 29.9 0.4 62 2-65 116-194 (195)
214 2vda_B Maltoporin; sugar trans 33.2 21 0.0007 18.0 1.3 16 91-106 9-24 (28)
215 1in4_A RUVB, holliday junction 32.5 2.5E+02 0.0084 24.3 10.6 47 50-98 174-220 (334)
216 2gkw_B Tumor necrosis factor r 27.6 43 0.0015 16.7 1.9 17 23-39 4-20 (26)
217 3pxi_A Negative regulator of g 26.2 92 0.0031 30.9 6.0 66 4-69 582-675 (758)
218 1ofh_A ATP-dependent HSL prote 24.0 2.6E+02 0.0089 23.4 8.0 20 49-68 195-214 (310)
219 3cz5_A Two-component response 22.9 1.2E+02 0.0042 22.2 5.0 21 49-69 103-123 (153)
220 2kjq_A DNAA-related protein; s 22.1 64 0.0022 24.4 3.1 36 4-39 86-125 (149)
221 3ec2_A DNA replication protein 21.1 28 0.00097 27.1 0.9 37 3-39 102-143 (180)
222 4fcw_A Chaperone protein CLPB; 20.5 1.4E+02 0.0048 25.3 5.4 21 49-69 209-229 (311)
223 3n70_A Transport activator; si 20.4 54 0.0018 24.5 2.4 36 4-39 79-116 (145)
224 2bjv_A PSP operon transcriptio 20.3 1.4E+02 0.0049 24.6 5.3 61 4-65 103-190 (265)
225 3eul_A Possible nitrate/nitrit 20.2 2.5E+02 0.0085 20.3 6.3 65 4-72 64-136 (152)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-33 Score=276.63 Aligned_cols=201 Identities=15% Similarity=0.134 Sum_probs=159.9
Q ss_pred CEEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCchhHHHhcC-ccceEEeCCCCHHHHHHHHHHhhhcCCCCCccH
Q 017858 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWG-VRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGY 79 (365)
Q Consensus 1 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~-~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~ 79 (365)
|||||||||||+.+++ .+.. .+||+||||||++.++..++ ....|+|++|+.+|||+||.+.+|.... .+.+
T Consensus 243 kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~ 315 (549)
T 2a5y_B 243 PNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKE 315 (549)
T ss_dssp TTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHH
T ss_pred CcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhH
Confidence 4999999999998876 2221 27999999999999998875 4468999999999999999999876543 4677
Q ss_pred HHHHHHHHHHcCCCchhHHHHhHhhcccCHHHHHHHHH-HHhhcCcccHHHHHHHHHhcCChhhhhhhh-----------
Q 017858 80 EELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATD-KLQRILYPSILEVLKISYDSLDDKEKNIFL----------- 147 (365)
Q Consensus 80 ~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~-~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~----------- 147 (365)
.+++++|+++|+|+||||+++|+.++.+.. +|...+. .+......++..++.+||+.||++++.||.
T Consensus 316 ~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~ 394 (549)
T 2a5y_B 316 EDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALA 394 (549)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhh
Confidence 889999999999999999999999987743 3323232 233334456777888888888888888888
Q ss_pred hhccccCCcCHHHHHHHHHHc--CCCcc-----------cchhHHhhcCceeEcc---CCcEEecHHHHHHHHHHHhhcC
Q 017858 148 DVACFFQGEDVDLVMKFFNAS--GFYPE-----------IGMSVLVDKSLIAIDS---HKKITMHDLLQELGREIVRQES 211 (365)
Q Consensus 148 ~ls~fp~~~~~~~l~~~w~~~--~~~~~-----------~~l~~L~~~sLl~~~~---~~~~~~H~lv~~~a~~~~~~~~ 211 (365)
|||+||+++.++ +..|+++ |++.. .++++|+++||++... ..+|+|||+||+||+.++.+++
T Consensus 395 ~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 395 FAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp GGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred heeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999999998888 7899999 76632 2699999999999865 3479999999999998776653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=1.7e-29 Score=269.40 Aligned_cols=199 Identities=20% Similarity=0.306 Sum_probs=168.7
Q ss_pred CEEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCchhHHHh-cCccceEEeCC-CCHHHHHHHHHHhhhcCCCCCcc
Q 017858 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRN-WGVRKIYEMKA-LEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 1 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~-~~~~~~~~l~~-L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
|||||||||||+.++|+.+ ++||+||||||++.++.. .+....+.+++ |+++||++||...++... +.
T Consensus 236 ~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~ 305 (1249)
T 3sfz_A 236 PRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---ED 305 (1249)
T ss_dssp CSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TT
T ss_pred CCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hh
Confidence 4899999999999877654 578999999999999854 45567899996 999999999999885433 23
Q ss_pred HHHHHHHHHHHcCCCchhHHHHhHhhcccCHHHHHHHHHHHhhcCc-----------ccHHHHHHHHHhcCChhhhhhhh
Q 017858 79 YEELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATDKLQRILY-----------PSILEVLKISYDSLDDKEKNIFL 147 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~-----------~~~~~~l~~sy~~L~~~~~~~~~ 147 (365)
..+.+++|+++|+|+||||+++|++|+.++ ..|..+++.+..... .++..++.+||+.|++++|.||+
T Consensus 306 ~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~ 384 (1249)
T 3sfz_A 306 LPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYT 384 (1249)
T ss_dssp CCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred CcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHH
Confidence 346799999999999999999999999876 468888888865431 36899999999999999999999
Q ss_pred hhccccCCcCH--HHHHHHHHHcCCCcccchhHHhhcCceeEccCC---cEEecHHHHHHHHHHHhhc
Q 017858 148 DVACFFQGEDV--DLVMKFFNASGFYPEIGMSVLVDKSLIAIDSHK---KITMHDLLQELGREIVRQE 210 (365)
Q Consensus 148 ~ls~fp~~~~~--~~l~~~w~~~~~~~~~~l~~L~~~sLl~~~~~~---~~~~H~lv~~~a~~~~~~~ 210 (365)
+||+||+++.+ +.++.+|.+++..++.++++|+++||++...++ +|+||+++|+|++..+.++
T Consensus 385 ~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 385 DLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999998644 688999987766677889999999999988755 4999999999999987655
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=2.1e-27 Score=238.27 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=148.2
Q ss_pred CEEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCchhHHHhcCccceEEeC------CCCHHHHHHHHHHhhhcCCC
Q 017858 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEMK------ALEYHHAIRLFSRHAFKQNH 74 (365)
Q Consensus 1 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~l~------~L~~~e~~~L~~~~~~~~~~ 74 (365)
||+||||||||+.++|+.+. +||+||||||++.++..+.....|+++ +|+.+|||+||++.. +..
T Consensus 244 KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~- 314 (1221)
T 1vt4_I 244 ENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR- 314 (1221)
T ss_dssp SSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-
T ss_pred CCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-
Confidence 68999999999999998763 589999999999998755444466777 999999999999984 322
Q ss_pred CCccHHHHHHHHHHHcCCCchhHHHHhHhhccc--CHHHHHHHHHHHhhcCcccHHHHHHHHHhcCChhh-hhhhhhhcc
Q 017858 75 PDVGYEELSCKVMKYAQGVPLALKVLGCFLHKR--EKEVWESATDKLQRILYPSILEVLKISYDSLDDKE-KNIFLDVAC 151 (365)
Q Consensus 75 ~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~--~~~~w~~~~~~l~~~~~~~~~~~l~~sy~~L~~~~-~~~~~~ls~ 151 (365)
.. ++..+| |+|+||||.++|+.|+.+ +.++|... ....+..++.+||+.||++. |+||++||+
T Consensus 315 -~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAI 380 (1221)
T 1vt4_I 315 -PQ---DLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380 (1221)
T ss_dssp -TT---THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTS
T ss_pred -HH---HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 11 233333 999999999999999987 77888753 34689999999999999999 999999999
Q ss_pred ccCCcCH--HHHHHHHHHcCC-CcccchhHHhhcCceeEcc-CCcEEecHHHHHHH
Q 017858 152 FFQGEDV--DLVMKFFNASGF-YPEIGMSVLVDKSLIAIDS-HKKITMHDLLQELG 203 (365)
Q Consensus 152 fp~~~~~--~~l~~~w~~~~~-~~~~~l~~L~~~sLl~~~~-~~~~~~H~lv~~~a 203 (365)
||+++.+ +.++.+|+++|. .++.++++|+++||++... .++|+|||++++++
T Consensus 381 FPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9998655 678899988752 2566799999999999864 57899999999855
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.93 E-value=5.3e-26 Score=224.73 Aligned_cols=195 Identities=21% Similarity=0.309 Sum_probs=157.6
Q ss_pred CEEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCchhHHHhcCccceEEe---CCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 1 MKVLIVFDDVTCFSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEM---KALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 1 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~l---~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
|++||||||||+.+.++.+ ++|++||||||++.++..++ ...+++ ++|+.+|+++||...++... .
T Consensus 236 ~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~---~ 304 (591)
T 1z6t_A 236 PRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK---A 304 (591)
T ss_dssp TTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG---G
T ss_pred CCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc---c
Confidence 4799999999998776543 46899999999998877654 234555 58999999999999986422 2
Q ss_pred cHHHHHHHHHHHcCCCchhHHHHhHhhcccCHHHHHHHHHHHhhcC-----------cccHHHHHHHHHhcCChhhhhhh
Q 017858 78 GYEELSCKVMKYAQGVPLALKVLGCFLHKREKEVWESATDKLQRIL-----------YPSILEVLKISYDSLDDKEKNIF 146 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~-----------~~~~~~~l~~sy~~L~~~~~~~~ 146 (365)
...+.+.+|+++|+|+|+||.++|++++... ..|..+++.+.... ..++..++..||+.||++.|.||
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l 383 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYY 383 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHH
Confidence 2235789999999999999999999998764 36888888876532 24788999999999999999999
Q ss_pred hhhccccCCcC--HHHHHHHHHHcCCCcccchhHHhhcCceeEccC---CcEEecHHHHHHHHHHH
Q 017858 147 LDVACFFQGED--VDLVMKFFNASGFYPEIGMSVLVDKSLIAIDSH---KKITMHDLLQELGREIV 207 (365)
Q Consensus 147 ~~ls~fp~~~~--~~~l~~~w~~~~~~~~~~l~~L~~~sLl~~~~~---~~~~~H~lv~~~a~~~~ 207 (365)
.++|+||++.. .+.+...|..++...+..+++|+++||+....+ .+|+||+++|+|++...
T Consensus 384 ~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 384 TDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99999998754 467888886554445677999999999987653 37999999999999873
No 5
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=3.6e-12 Score=110.09 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=95.7
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC-C
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL-S 312 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~-~ 312 (365)
..++.+.+..+.+ ..+.+..|..+++|+.|++++|. ++.+|. ..+++|++|++++|.+..+|... .
T Consensus 40 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~--------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQ--------LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCC--------CCCcChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence 4456666655554 44667789999999999995444 556765 67899999999999999998765 4
Q ss_pred -CCCceEEeccCCcccccccccccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 313 -AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 313 -l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
+++|++|++++|.+..+|..+..+++|++|++++|. +. .+|. |..+++|+
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LK-SIPHGAFDRLSSLT 162 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CC-CCCTTTTTTCTTCC
T ss_pred cchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CC-ccCHHHHhCCCCCC
Confidence 999999999999999999999999999999999998 67 6774 88888876
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.28 E-value=1.6e-11 Score=105.40 Aligned_cols=115 Identities=24% Similarity=0.347 Sum_probs=93.1
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCcccccccc-CC--CCCCcccEEEEeCCCCCCCCCCC--C
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYL-QD--PGFAEVKYLHWYGYPLKSLPSNL--S 312 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-p~--~~l~~L~~L~l~~~~i~~lp~~~--~ 312 (365)
.++.+.+..+.+ ..+++..|..+++|+.|++++|. ++.+ |. ..+++|++|++++|.+..+|..+ +
T Consensus 33 ~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~--------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 102 (220)
T 2v9t_B 33 TITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQ--------ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102 (220)
T ss_dssp TCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSC--------CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCc--------CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccC
Confidence 456666665554 45667789999999999995544 5455 33 78899999999999999999876 4
Q ss_pred CCCceEEeccCCccccc-ccccccCccCceecccccccccccCC-C-CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERL-WHCVKHYSKLNQIIHAACNMLTAKIP-N-PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~lp-~-~~~l~~L~ 364 (365)
+++|++|+|++|.+..+ |..+..+++|++|++++|. ++ .+| . |+.+++|+
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQ-TIAKGTFSPLRAIQ 155 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CS-CCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CC-EECHHHHhCCCCCC
Confidence 99999999999999887 6678999999999999998 66 565 4 88888875
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.25 E-value=8e-12 Score=113.95 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=37.8
Q ss_pred CCCCcccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcc-cccccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 289 PGFAEVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDI-ERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
..+++|++|++++|.+..+|..+. +++|++|++++|.+ ..+|..++.+++|++|++++|...+ .+|. ++.+++|+
T Consensus 203 ~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLE 280 (328)
T ss_dssp GGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-BCCTTGGGCTTCC
T ss_pred cCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-hcchhhhcCCCCC
Confidence 444555555555555555554442 55555555555432 3445555555555555555555444 5554 55554443
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=5.2e-11 Score=101.08 Aligned_cols=115 Identities=16% Similarity=0.266 Sum_probs=85.3
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--C
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--S 312 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~ 312 (365)
.++.+.+..+.+ ..+++..|..+++|++|++++| .++.+|. ..+++|++|++++|.+..+|... +
T Consensus 29 ~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 29 QTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGN--------KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCcEEEcCCCcc--CcCChhhhcccccCcEEECCCC--------ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 455565555544 3456667788889999999544 3545655 56788899999999888887764 4
Q ss_pred CCCceEEeccCCcccccccc-cccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
+++|++|++++|.+..+|.. +..+++|++|++++|. ++ .+|. ++.+++|+
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~-~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LK-SVPDGVFDRLTSLQ 151 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CS-CCCTTTTTTCTTCC
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cc-eeCHHHhccCCCcc
Confidence 88899999999988888665 5888899999998887 56 5654 77777775
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=4.6e-11 Score=104.59 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=88.2
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL 311 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~ 311 (365)
....++.+.+..+.+ ..+++..|..+++|++|++++| .++.+|. ..+++|++|++++|.+..+|...
T Consensus 57 ~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 126 (251)
T 3m19_A 57 GLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANN--------QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV 126 (251)
T ss_dssp TCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCC--------cccccChhHhcccCCCCEEEcCCCcCCCcChhH
Confidence 345566666665554 3455667788888888888544 3555665 67788999999999988888765
Q ss_pred -C-CCCceEEeccCCccccccc-ccccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 312 -S-AKKLVLVEVPDSDIERLWH-CVKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 312 -~-l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
. +.+|++|++++|.+..+|. .++.+++|++|++++|. ++ .+|. +..+++|+
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQ-SVPHGAFDRLGKLQ 182 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CS-CCCTTTTTTCTTCC
T ss_pred hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CC-ccCHHHHhCCCCCC
Confidence 4 8899999999999888876 57888999999999988 55 5553 77777775
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.20 E-value=7.3e-11 Score=103.26 Aligned_cols=115 Identities=19% Similarity=0.267 Sum_probs=93.2
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--C
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--S 312 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~ 312 (365)
.++.+.+..+.+ ..+.+..|.++++|++|++++|. ++.++. ..+++|++|++++|.+..+|... +
T Consensus 36 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 105 (251)
T 3m19_A 36 DTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQ--------LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH 105 (251)
T ss_dssp TCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSC--------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCc--------CCccCHhHhccCCcCCEEECCCCcccccChhHhcc
Confidence 456666555554 45567789999999999996544 445555 67899999999999999998765 4
Q ss_pred CCCceEEeccCCcccccccc-cccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
+++|++|++++|.+..+|.. +..+++|++|++++|. ++ .+|. |+.+++|+
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~-~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQ-SIPAGAFDKLTNLQ 158 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-CCCTTTTTTCTTCC
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CC-ccCHHHcCcCcCCC
Confidence 99999999999999999776 5889999999999998 66 6664 88888886
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=5.5e-11 Score=102.00 Aligned_cols=114 Identities=16% Similarity=0.238 Sum_probs=86.6
Q ss_pred EEEeecccccccccc-CccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CC
Q 017858 240 EGICLDMSKIKEIRL-NPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SA 313 (365)
Q Consensus 240 ~~l~l~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l 313 (365)
+.+.+..+.+ ..+ +...|..+++|+.|++++| .++.++. ..+++|++|++++|.+..+|... ++
T Consensus 35 ~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N--------~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 35 AELRLNNNEF--TVLEATGIFKKLPQLRKINFSNN--------KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp SEEECCSSCC--CEECCCCCGGGCTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CEEEcCCCcC--CccCchhhhccCCCCCEEECCCC--------cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 4555555544 333 3356788999999999544 3555654 77889999999999999888764 49
Q ss_pred CCceEEeccCCccccc-ccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 314 KKLVLVEVPDSDIERL-WHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 314 ~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
++|++|+|++|.+..+ |..+..+++|++|++++|. +++..|. |+.+++|+
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLS 156 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCC
Confidence 9999999999999887 6778899999999999998 5514466 88888875
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.18 E-value=7.2e-11 Score=105.67 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=61.7
Q ss_pred CCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCC-C-CCCCceEEeccCCcccccccc-cc
Q 017858 260 TKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWHC-VK 334 (365)
Q Consensus 260 ~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~-~-~l~~L~~L~l~~~~l~~lp~~-i~ 334 (365)
..+++|+.|++++| .++.+|. ..+++|++|++++|.+..+|.. + ++++|++|++++|.+..+|.+ +.
T Consensus 74 ~~l~~L~~L~Ls~N--------~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 145 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN--------QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145 (290)
T ss_dssp SCCTTCCEEECCSS--------CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCCcCCEEECCCC--------cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc
Confidence 34555555555322 3445555 5667777777777777777644 3 377777777777777777554 36
Q ss_pred cCccCceecccccccccccCCC--CCCCCCCC
Q 017858 335 HYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 335 ~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
.+++|++|++++|. ++ .+|. |..+++|+
T Consensus 146 ~l~~L~~L~L~~N~-l~-~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 146 PTPKLEKLSLANNN-LT-ELPAGLLNGLENLD 175 (290)
T ss_dssp TCTTCCEEECTTSC-CS-CCCTTTTTTCTTCC
T ss_pred cccCCCEEECCCCc-CC-ccCHHHhcCcCCCC
Confidence 67777777777776 56 5664 56666664
No 13
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=2e-11 Score=122.90 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=60.1
Q ss_pred cCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcccccc
Q 017858 254 LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDIERLW 330 (365)
Q Consensus 254 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l~~lp 330 (365)
+++..|..+..|+.|+|+ ++ .+..+|. ..+++|++|+|++|.+..+|..++ +.+|++|+|++|.+..+|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls-~n-------~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 286 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLS-NL-------QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286 (727)
T ss_dssp -------CCCCCCEEECT-TS-------CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCC
T ss_pred cChhhhccCCCCcEEECC-CC-------CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccC
Confidence 345556666666667663 33 3445554 556666666666666666666663 666666666666666666
Q ss_pred cccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 331 HCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 331 ~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
.+++.|++|++|+|++|. ++ .+|. |+.+++|+
T Consensus 287 ~~~~~l~~L~~L~L~~N~-l~-~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNM-VT-TLPWEFGNLCNLQ 319 (727)
T ss_dssp SSGGGGTTCSEEECCSSC-CC-CCCSSTTSCTTCC
T ss_pred hhhcCCCCCCEEECCCCC-CC-ccChhhhcCCCcc
Confidence 666666666666666665 55 6665 66666664
No 14
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=1.8e-11 Score=98.09 Aligned_cols=118 Identities=18% Similarity=0.313 Sum_probs=92.6
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCC-CCCCCC-
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKS-LPSNLS- 312 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~-lp~~~~- 312 (365)
...++.+.+..+.+....+ +..+..+++|+.|++++|. ++.++. ..+++|++|++++|.+.. +|..+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~--------l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVG--------LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBC-CSCCTTCTTCCEEECTTSC--------CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCcCChhHH-HHHHhhcCCCcEEECcCCC--------CCCchhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 4567777777766542233 4577899999999995444 445555 888999999999999988 666665
Q ss_pred CCCceEEeccCCcccccc--cccccCccCceecccccccccccCCC-----CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERLW--HCVKHYSKLNQIIHAACNMLTAKIPN-----PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~lp~-----~~~l~~L~ 364 (365)
+++|++|++++|.+..+| ..++.+++|++|++++|. ++ .+|. ++.+++|+
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~-~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VT-NLNDYRENVFKLLPQLT 143 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GG-GSTTHHHHHHHHCTTCC
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-cc-chHHHHHHHHHHCCCcc
Confidence 999999999999998875 789999999999999998 66 5553 67777765
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.17 E-value=1.3e-10 Score=102.73 Aligned_cols=116 Identities=17% Similarity=0.303 Sum_probs=71.6
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL-- 311 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~-- 311 (365)
+.++.+.+..+.+ ..+++..|..+++|+.|++++| .++.++. ..+++|++|++++|.+..+|...
T Consensus 85 ~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 85 KNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRN--------QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCSSCCEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCEEECCCCcC--CcCCHhHcccccCCCEEECCCC--------ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 4444444444333 2334445566666666666433 2334444 55677777777777777777653
Q ss_pred CCCCceEEeccCCcccccccc-cccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 312 SAKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
.+++|++|++++|.+..+|.. +..+++|++|++++|. ++ .+|. +..+++|+
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LK-RVPEGAFDSLEKLK 208 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CS-CCCTTTTTTCTTCC
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CC-cCCHHHhccccCCC
Confidence 377777777777777777553 5677777777777776 55 5554 66666664
No 16
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=7.8e-11 Score=96.41 Aligned_cols=118 Identities=14% Similarity=0.264 Sum_probs=81.9
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCC-CCCCCC-
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKS-LPSNLS- 312 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~-lp~~~~- 312 (365)
.+.++.+.+..+.+....+ +..+..+++|++|++++|. ++.++. ..+++|++|++++|.+.. +|..+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~--------l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVG--------LISVSNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSC--------CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCC--------CCChhhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 3556777666665531123 4456778888888885444 434444 777888888888888877 554444
Q ss_pred CCCceEEeccCCcccccc--cccccCccCceecccccccccccCCC-----CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERLW--HCVKHYSKLNQIIHAACNMLTAKIPN-----PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~lp~-----~~~l~~L~ 364 (365)
+++|++|++++|.+..+| ..+..+++|++|++++|. +. .+|. +..+++|+
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~-~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VT-NLNDYRESVFKLLPQLT 150 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GG-TSTTHHHHHHTTCSSCC
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-Cc-chHHHHHHHHHhCccCc
Confidence 888888888888888776 677888888888888887 55 4442 66666665
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.16 E-value=4.2e-11 Score=118.46 Aligned_cols=117 Identities=18% Similarity=0.315 Sum_probs=86.8
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--C
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--S 312 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~ 312 (365)
.++.+.+..+.+ ..+++..|.++++|++|+|++ + .|+.+|+ ..+++|++|+|++|+++.+|... +
T Consensus 53 ~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~-N-------~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSR-C-------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECTT-C-------CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCC-C-------cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 456665555544 456677888999999999954 4 4656665 67888999999999888888654 4
Q ss_pred CCCceEEeccCCccccccc-ccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERLWH-CVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
+.+|++|++++|++..+|. .++++++|++|++++|......+|. ++.+++|+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 8889999999998888865 4788889999999888732213455 77777765
No 18
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.16 E-value=6.1e-11 Score=108.09 Aligned_cols=117 Identities=19% Similarity=0.329 Sum_probs=96.0
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCC-CCCCCCCC-
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYP-LKSLPSNL- 311 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~-i~~lp~~~- 311 (365)
...++.+.+..+.+. .+ +..+.++++|+.|++++|. ++.+|. ..+++|++|++++|. ...+|..+
T Consensus 182 l~~L~~L~L~~n~l~--~l-p~~l~~l~~L~~L~L~~N~--------l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR--SL-PASIANLQNLKSLKIRNSP--------LSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp STTCCEEEEEEECCC--CC-CGGGGGCTTCCEEEEESSC--------CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred CCCCCEEECcCCCcC--cc-hHhhcCCCCCCEEEccCCC--------CCcCchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 456677777666554 33 4568899999999996554 556666 788999999999988 45788888
Q ss_pred CCCCceEEeccCCc-ccccccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 312 SAKKLVLVEVPDSD-IERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 312 ~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
++++|++|++++|. +..+|..++.+++|++|++++|..++ .+|. ++.+++|+
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANC 304 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC-CCCGGGGGSCTTC
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh-hccHHHhhccCce
Confidence 49999999999985 57789999999999999999999788 9998 99998875
No 19
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=5.1e-11 Score=98.39 Aligned_cols=116 Identities=13% Similarity=0.128 Sum_probs=88.5
Q ss_pred CCceEEEEeeccccccccccCccccCCC-CCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC-
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKM-PKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL- 311 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~- 311 (365)
....++.+.+..+.+.. + +. +..+ ++|+.|++++|. ++.++. ..+++|++|++++|.+..+|+.+
T Consensus 17 ~~~~L~~L~l~~n~l~~--i-~~-~~~~~~~L~~L~Ls~N~--------l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV--I-EN-LGATLDQFDAIDFSDNE--------IRKLDGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp CTTSCEEEECTTSCCCS--C-CC-GGGGTTCCSEEECCSSC--------CCEECCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred CcCCceEEEeeCCCCch--h-HH-hhhcCCCCCEEECCCCC--------CCcccccccCCCCCEEECCCCcccccCcchh
Confidence 45567777777776643 3 22 3444 489999996544 445655 78889999999999999998776
Q ss_pred C-CCCceEEeccCCccccccc--ccccCccCceecccccccccccCCC-----CCCCCCCC
Q 017858 312 S-AKKLVLVEVPDSDIERLWH--CVKHYSKLNQIIHAACNMLTAKIPN-----PTLMPRMK 364 (365)
Q Consensus 312 ~-l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~lp~-----~~~l~~L~ 364 (365)
. +++|++|++++|.+..+|. .+..+++|++|++++|. +. .+|. ++.+++|+
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~-~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VT-NKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GG-GSTTHHHHHHHHCTTCS
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CC-CcHhHHHHHHHHCCccc
Confidence 4 8999999999999988887 78899999999999998 66 6775 56666664
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.13 E-value=2.5e-10 Score=100.99 Aligned_cols=117 Identities=20% Similarity=0.264 Sum_probs=80.1
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC-
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL- 311 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~- 311 (365)
...++.+.+..+.+ ..+++..|.++++|++|++++| .++.+|. ..+++|++|++++|.+..+|...
T Consensus 60 l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 129 (270)
T 2o6q_A 60 LTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDN--------KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129 (270)
T ss_dssp CTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSS--------CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCC--------cCCcCCHhHcccccCCCEEECCCCccCeeCHHHh
Confidence 44555555554443 2445556667777777777433 3445554 56678888888888888777654
Q ss_pred -CCCCceEEeccCCcccccccc-cccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 312 -SAKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 312 -~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
.+++|++|++++|.+..+|.. +..+++|++|++++|. ++ .+|. |+.+++|+
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~-~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LK-RVPEGAFDKLTELK 184 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CS-CCCTTTTTTCTTCC
T ss_pred CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-Cc-EeChhHhccCCCcC
Confidence 388888888888888877665 5778888888888887 55 5554 77777765
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.13 E-value=2.3e-10 Score=102.36 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=90.0
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL 311 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~ 311 (365)
..+.++.+.+..+.+.. + +..+..+++|+.|++++| .++.+|. ..+++|++|++++|.+..+|..+
T Consensus 75 ~l~~L~~L~Ls~N~l~~--l-~~~~~~l~~L~~L~l~~N--------~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 143 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQS--L-PLLGQTLPALTVLDVSFN--------RLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143 (290)
T ss_dssp CCTTCCEEECCSSCCSS--C-CCCTTTCTTCCEEECCSS--------CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCcCCEEECCCCcCCc--C-chhhccCCCCCEEECCCC--------cCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence 34556777666665542 2 456788899999999544 4556665 67889999999999999888765
Q ss_pred --CCCCceEEeccCCccccccccc-ccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 312 --SAKKLVLVEVPDSDIERLWHCV-KHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 312 --~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
.+++|++|++++|.+..+|.++ ..+++|++|++++|. ++ .+|. +..+.+|+
T Consensus 144 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~-~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LY-TIPKGFFGSHLLP 198 (290)
T ss_dssp TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CC-CCCTTTTTTCCCS
T ss_pred cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CC-ccChhhcccccCC
Confidence 4899999999999999988765 779999999999988 77 7887 66666654
No 22
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.11 E-value=2.9e-10 Score=95.37 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=29.4
Q ss_pred CCCCcccEEEEeCCCCCCCCCC-C-CCCCceEEeccCCcccccccc-cccCccCceecccccc
Q 017858 289 PGFAEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACN 348 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp~~-~-~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 348 (365)
..+++|++|++++|.+..+|.. + ++++|++|+|++|.+..+|.. +..+++|++|++++|.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 3445555555555555544432 2 255555555555555554442 3445555555555443
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.11 E-value=1.3e-10 Score=105.17 Aligned_cols=120 Identities=17% Similarity=0.241 Sum_probs=90.0
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEec-CccCCCccccccccCC--CCCCcccEEEEeCCCCC-CCCCCC-
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYR-SSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLK-SLPSNL- 311 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~-~lp~~~- 311 (365)
..++.+.+..+........+..|.++++|++|++++ |...+ .+|. ..+++|++|++++|.+. .+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-------PIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-------CCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-------cCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 467777777666542113456788899999999963 55222 4565 77888999999999887 677777
Q ss_pred CCCCceEEeccCCccc-ccccccccCccCceecccccccccccCCC-CCCCC-CCC
Q 017858 312 SAKKLVLVEVPDSDIE-RLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMP-RMK 364 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~-~L~ 364 (365)
.+++|++|++++|.+. .+|..+..+++|++|++++|.... .+|. ++.++ +|+
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFT 177 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCC
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC-cCCHHHhhhhhcCc
Confidence 4889999999999886 678888889999999999888444 7886 77776 654
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.09 E-value=4.7e-10 Score=99.30 Aligned_cols=118 Identities=16% Similarity=0.280 Sum_probs=84.5
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL 311 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~ 311 (365)
....++.+.+..+.+ ..+++..|..+++|++|++++|. ++.++. ..+++|++|++++|.+..+|...
T Consensus 83 ~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 152 (272)
T 3rfs_A 83 ELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQ--------LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152 (272)
T ss_dssp TCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSC--------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCEEECCCCcc--CccChhHhcCCcCCCEEECCCCc--------CCccCHHHhccCCCCCEEECCCCccCccCHHH
Confidence 445566666665544 34556667888888888885443 445554 56788888888888888887654
Q ss_pred -C-CCCceEEeccCCcccccccc-cccCccCceecccccccccccCC-C-CCCCCCCC
Q 017858 312 -S-AKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACNMLTAKIP-N-PTLMPRMK 364 (365)
Q Consensus 312 -~-l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp-~-~~~l~~L~ 364 (365)
. +++|++|++++|.+..+|.. ++.+++|++|++++|. +. .+| . ++.+++|+
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LK-SVPDGVFDRLTSLQ 208 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CS-CCCTTTTTTCTTCC
T ss_pred hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CC-ccCHHHHhCCcCCC
Confidence 3 88888888888888777655 4788888888888887 55 444 3 77777775
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=2e-10 Score=96.62 Aligned_cols=73 Identities=10% Similarity=0.168 Sum_probs=39.0
Q ss_pred CCCCcccEEEEeCCCCCC-CCCCC-CCCCceEEeccCCc-ccccccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 289 PGFAEVKYLHWYGYPLKS-LPSNL-SAKKLVLVEVPDSD-IERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~-lp~~~-~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
..+++|++|++++|.+.. .|..+ .+++|++|++++|. +..+| .+..+++|++|++++|. +. .+|.+..+++|+
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~-~~~~l~~l~~L~ 184 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VH-DYRGIEDFPKLN 184 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CC-CCTTGGGCSSCC
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-Cc-ChHHhccCCCCC
Confidence 445555566665555553 33333 25556666666664 55554 45555666666666555 44 444444444443
No 26
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=5.2e-10 Score=93.67 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=46.0
Q ss_pred cCCCCCCceEEEecCccCCCcccccccc-CC--CCCCcccEEEEeCCCCCCCCCC-C-CCCCceEEeccCCccccc-ccc
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYL-QD--PGFAEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERL-WHC 332 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l-p~--~~l~~L~~L~l~~~~i~~lp~~-~-~l~~L~~L~l~~~~l~~l-p~~ 332 (365)
|..+++|+.|++++|. ++.+ |. ..+++|++|++++|.+..+|.. + ++++|++|++++|.+..+ |..
T Consensus 50 ~~~l~~L~~L~Ls~N~--------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 121 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQ--------LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121 (192)
T ss_dssp GGGCTTCCEEECCSSC--------CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred cccCCCCCEEECCCCC--------CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH
Confidence 5566666666664333 3333 22 4556666666666666655543 3 366666666666666544 455
Q ss_pred cccCccCceecccccc
Q 017858 333 VKHYSKLNQIIHAACN 348 (365)
Q Consensus 333 i~~l~~L~~L~l~~~~ 348 (365)
+..+++|++|++++|.
T Consensus 122 ~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 122 FEHLNSLTSLNLASNP 137 (192)
T ss_dssp STTCTTCCEEECTTCC
T ss_pred hhcCCCCCEEEeCCCC
Confidence 5666666666666654
No 27
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.07 E-value=4.7e-10 Score=96.71 Aligned_cols=92 Identities=16% Similarity=0.272 Sum_probs=78.8
Q ss_pred CCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccccccc-cccC
Q 017858 263 PKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKHY 336 (365)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~lp~~-i~~l 336 (365)
++|++|++++|. ++.+++ ..+++|++|++++|.+..+|... ++++|++|+|++|.+..+|.. +..+
T Consensus 40 ~~L~~L~Ls~n~--------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 111 (229)
T 3e6j_A 40 TNAQILYLHDNQ--------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111 (229)
T ss_dssp TTCSEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEEcCCCc--------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc
Confidence 789999996554 445543 77899999999999999999765 499999999999999999766 5899
Q ss_pred ccCceecccccccccccCCC-CCCCCCCC
Q 017858 337 SKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 337 ~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
++|++|++++|. ++ .+|. ++.+++|+
T Consensus 112 ~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 112 VHLKELFMCCNK-LT-ELPRGIERLTHLT 138 (229)
T ss_dssp TTCCEEECCSSC-CC-SCCTTGGGCTTCS
T ss_pred hhhCeEeccCCc-cc-ccCcccccCCCCC
Confidence 999999999998 78 8997 88888876
No 28
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=3.6e-10 Score=104.37 Aligned_cols=93 Identities=13% Similarity=0.272 Sum_probs=48.3
Q ss_pred cCccccC-CCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCccc
Q 017858 254 LNPSTFT-KMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIE 327 (365)
Q Consensus 254 ~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~ 327 (365)
+++..|. .+++|+.|++++| .|+.++. ..+++|++|++++|.+..+|... ++.+|++|+|++|.+.
T Consensus 54 l~~~~~~~~l~~L~~L~L~~N--------~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 54 LRAEWTPTRLTNLHSLLLSHN--------HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp ECTTSSSSCCTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred cChhhhhhcccccCEEECCCC--------cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence 3444444 5556666666332 2333433 44555566666665555555432 2555566666555555
Q ss_pred cc-ccccccCccCceecccccccccccCCC
Q 017858 328 RL-WHCVKHYSKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 328 ~l-p~~i~~l~~L~~L~l~~~~~l~~~lp~ 356 (365)
.+ |..+..+++|++|++++|. +. .+|.
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~-l~-~l~~ 153 (361)
T 2xot_A 126 VVDRNAFEDMAQLQKLYLSQNQ-IS-RFPV 153 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSC-CC-SCCG
T ss_pred EECHHHhCCcccCCEEECCCCc-CC-eeCH
Confidence 54 3445555555555555555 44 4443
No 29
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.05 E-value=7.5e-10 Score=98.01 Aligned_cols=115 Identities=17% Similarity=0.312 Sum_probs=91.2
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC-
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL- 311 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~- 311 (365)
.+.++.+.+..+..... ..+..+++|++|++++| .++.++. ..+++|++|++++|.+..+|...
T Consensus 62 l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 129 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI----SALKELTNLTYLILTGN--------QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129 (272)
T ss_dssp CTTCCEEECTTSCCCCC----GGGTTCTTCCEEECTTS--------CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCCCcEEECCCCCCCCc----hhhcCCCCCCEEECCCC--------ccCccChhHhcCCcCCCEEECCCCcCCccCHHHh
Confidence 45677777776655432 46889999999999544 3555655 67899999999999999888764
Q ss_pred C-CCCceEEeccCCcccccccc-cccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 312 S-AKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 312 ~-l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
. +++|++|++++|.+..+|.. ++.+++|++|++++|. ++ .+|. ++.+++|+
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQ-SLPEGVFDKLTQLK 184 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-CCCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cC-ccCHHHhcCCccCC
Confidence 4 99999999999999888765 5899999999999998 66 5664 78888876
No 30
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=2.8e-10 Score=111.23 Aligned_cols=111 Identities=9% Similarity=0.157 Sum_probs=88.6
Q ss_pred EEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCC-CCCC
Q 017858 239 IEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNL-SAKK 315 (365)
Q Consensus 239 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~-~l~~ 315 (365)
++.+.+..+.+.. ++ . |..+++|+.|++++| .++.+|. ..+++|++|++++|.++.+| .+ ++++
T Consensus 443 L~~L~Ls~n~l~~--lp-~-~~~l~~L~~L~Ls~N--------~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~ 509 (567)
T 1dce_A 443 VRVLHLAHKDLTV--LC-H-LEQLLLVTHLDLSHN--------RLRALPPALAALRCLEVLQASDNALENVD-GVANLPR 509 (567)
T ss_dssp CSEEECTTSCCSS--CC-C-GGGGTTCCEEECCSS--------CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSS
T ss_pred ceEEEecCCCCCC--Cc-C-ccccccCcEeecCcc--------cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCC
Confidence 4556555555433 43 3 889999999999544 4667887 88999999999999999998 66 5999
Q ss_pred ceEEeccCCccccc--ccccccCccCceecccccccccccCCC-CC----CCCCCC
Q 017858 316 LVLVEVPDSDIERL--WHCVKHYSKLNQIIHAACNMLTAKIPN-PT----LMPRMK 364 (365)
Q Consensus 316 L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~l~~~lp~-~~----~l~~L~ 364 (365)
|++|+|++|.+..+ |..++.+++|++|++++|. ++ .+|+ +. .+++|+
T Consensus 510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~-~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LC-QEEGIQERLAEMLPSVS 563 (567)
T ss_dssp CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GG-GSSSCTTHHHHHCTTCS
T ss_pred CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CC-CCccHHHHHHHHCcccC
Confidence 99999999999888 8999999999999999998 66 5554 33 356664
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.05 E-value=4.7e-10 Score=110.69 Aligned_cols=117 Identities=18% Similarity=0.318 Sum_probs=63.0
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCC-CCCC-C
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSL-PSNL-S 312 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~l-p~~~-~ 312 (365)
.++.+.+..+.+ ..+++..|.++++|++|++++|. ++.+++ ..+++|++|++++|.+..+ |..+ +
T Consensus 33 ~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~--------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 33 STKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCE--------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCc--------ccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 344444444333 33445556666666666664332 333432 4556666666666666655 4444 3
Q ss_pred CCCceEEeccCCcccccc-cccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERLW-HCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
+++|++|++++|.+..+| ..++.+++|++|++++|....+.+|. |+++++|+
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 666666666666665554 45566666666666666522212455 66555554
No 32
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=1.1e-09 Score=90.33 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=64.6
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC-C-
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL-S- 312 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~-~- 312 (365)
.++.+.+..+.. ..+++..|..+++|++|++++| .++.+|. ..+++|++|++++|.+..+|... .
T Consensus 29 ~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 29 SATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQN--------QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98 (177)
T ss_dssp TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCC--------cceEeChhHccCCCccCEEECCCCCccccCHHHhhC
Confidence 445555444443 2445556677777777777433 3444554 45677777777777777776654 3
Q ss_pred CCCceEEeccCCccccccccc-ccCccCceecccccc
Q 017858 313 AKKLVLVEVPDSDIERLWHCV-KHYSKLNQIIHAACN 348 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~ 348 (365)
+++|++|++++|.+..+|..+ ..+++|++|++++|.
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 777777777777777776654 667777777777776
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.04 E-value=8.2e-10 Score=98.36 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=78.3
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCC-C
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSN-L 311 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~-~ 311 (365)
.+.++.+.+..+.. ...+.+..|..+++|+.|++++|. ++.++. ..+++|++|++++|.+..+|.. +
T Consensus 79 l~~L~~L~l~~n~~-l~~~~~~~~~~l~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 149 (285)
T 1ozn_A 79 LALLEQLDLSDNAQ-LRSVDPATFHGLGRLHTLHLDRCG--------LQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149 (285)
T ss_dssp CTTCCEEECCSCTT-CCCCCTTTTTTCTTCCEEECTTSC--------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCEEeCCCCCC-ccccCHHHhcCCcCCCEEECCCCc--------CCEECHhHhhCCcCCCEEECCCCcccccCHhHh
Confidence 34455554444430 123345566677777777774333 334433 5677888888888888877765 3
Q ss_pred -CCCCceEEeccCCcccccccc-cccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 312 -SAKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 312 -~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
.+++|++|++++|.+..+|.. +..+++|++|++++|.... ..|. ++.+++|+
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLM 204 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCC
T ss_pred ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc-cCHhHccCccccc
Confidence 388888888888888777654 6778888888888887333 4465 77777765
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.03 E-value=1.1e-09 Score=97.54 Aligned_cols=118 Identities=18% Similarity=0.344 Sum_probs=92.5
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCC-
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSN- 310 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~- 310 (365)
....++.+.+..+.. ..+.+..|.++++|+.|++++|. ++.++. ..+++|++|++++|.+..+|..
T Consensus 103 ~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNA--------LQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp TCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCcCCCEEECCCCcC--CEECHhHhhCCcCCCEEECCCCc--------ccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 445677776666554 34556778899999999995443 445555 6788999999999999988875
Q ss_pred C-CCCCceEEeccCCccccc-ccccccCccCceecccccccccccCC-C-CCCCCCCC
Q 017858 311 L-SAKKLVLVEVPDSDIERL-WHCVKHYSKLNQIIHAACNMLTAKIP-N-PTLMPRMK 364 (365)
Q Consensus 311 ~-~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~lp-~-~~~l~~L~ 364 (365)
+ ++++|++|++++|.+..+ |..+..+++|++|++++|. ++ .+| . ++.+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LS-ALPTEALAPLRALQ 228 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CS-CCCHHHHTTCTTCC
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CC-cCCHHHcccCcccC
Confidence 4 499999999999998776 7888999999999999998 66 566 3 88887775
No 35
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.03 E-value=6e-10 Score=98.77 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=46.6
Q ss_pred CccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCC-CC-CCCCceEEeccCCcccc-
Q 017858 255 NPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIER- 328 (365)
Q Consensus 255 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~-~~-~l~~L~~L~l~~~~l~~- 328 (365)
++..|.++++|+.|++++|. ++.++. ..+++|++|++++|.+..++. .+ .+++|++|++++|.+..
T Consensus 68 ~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 139 (276)
T 2z62_A 68 EDGAYQSLSHLSTLILTGNP--------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139 (276)
T ss_dssp CTTTTTTCTTCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CHHHccCCcCCCEEECCCCc--------cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee
Confidence 34445555555555553222 333332 445566666666666555544 23 25666666666666544
Q ss_pred -cccccccCccCceecccccc
Q 017858 329 -LWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 329 -lp~~i~~l~~L~~L~l~~~~ 348 (365)
+|..+..+++|++|++++|.
T Consensus 140 ~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 140 KLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CCCGGGGGCTTCCEEECCSSC
T ss_pred cCchhhccCCCCCEEECCCCC
Confidence 45566666666666666665
No 36
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.03 E-value=3.8e-10 Score=97.88 Aligned_cols=86 Identities=7% Similarity=0.124 Sum_probs=38.7
Q ss_pred cCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeC-CCCCCCCCCC--CCCCceEEeccCCccc
Q 017858 254 LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYG-YPLKSLPSNL--SAKKLVLVEVPDSDIE 327 (365)
Q Consensus 254 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~-~~i~~lp~~~--~l~~L~~L~l~~~~l~ 327 (365)
+++..|.++++|+.|++++|. .++.++. ..+++|++|++++ |.++.+|... ++++|++|++++|.+.
T Consensus 46 i~~~~~~~l~~L~~L~l~~n~-------~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 46 IPSHAFSNLPNISRIYVSIDV-------TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp ECTTTTTTCTTCCEEEEECCS-------SCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC
T ss_pred ECHHHccCCCCCcEEeCCCCC-------CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc
Confidence 334445555555555553332 1223332 3444455555554 4444444322 2444555555555444
Q ss_pred ccccccccCccCc---eeccccc
Q 017858 328 RLWHCVKHYSKLN---QIIHAAC 347 (365)
Q Consensus 328 ~lp~~i~~l~~L~---~L~l~~~ 347 (365)
.+|. +..+++|+ +|++++|
T Consensus 119 ~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 119 MFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp SCCC-CTTCCBCCSEEEEEEESC
T ss_pred cccc-cccccccccccEEECCCC
Confidence 4443 44444444 4444444
No 37
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=1.2e-09 Score=90.07 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=69.7
Q ss_pred CCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccccccc-cccC
Q 017858 263 PKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKHY 336 (365)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~lp~~-i~~l 336 (365)
++|+.|++++|. ++.+++ ..+++|++|++++|.+..+|..+ ++++|++|+|++|.+..+|.. +..+
T Consensus 33 ~~L~~L~Ls~N~--------l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 104 (174)
T 2r9u_A 33 TDKQRLWLNNNQ--------ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL 104 (174)
T ss_dssp TTCSEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEeCCCC--------ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccc
Confidence 789999995544 556644 77899999999999999999875 499999999999999999876 7899
Q ss_pred ccCceecccccccccccCC
Q 017858 337 SKLNQIIHAACNMLTAKIP 355 (365)
Q Consensus 337 ~~L~~L~l~~~~~l~~~lp 355 (365)
++|++|++++|. +. ..|
T Consensus 105 ~~L~~L~L~~N~-~~-c~~ 121 (174)
T 2r9u_A 105 KSLTHIYLYNNP-WD-CEC 121 (174)
T ss_dssp TTCSEEECCSSC-BC-TTB
T ss_pred cCCCEEEeCCCC-cc-ccc
Confidence 999999999997 44 344
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.02 E-value=7.5e-10 Score=105.37 Aligned_cols=85 Identities=21% Similarity=0.292 Sum_probs=38.9
Q ss_pred cCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC-C-CCCceEEeccCCcccc
Q 017858 254 LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL-S-AKKLVLVEVPDSDIER 328 (365)
Q Consensus 254 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~-~-l~~L~~L~l~~~~l~~ 328 (365)
+.+..|.++++|+.|++++|. ++.++. ..+++|++|++++|.+..+|... . +++|++|++++|.+..
T Consensus 90 ~~~~~~~~l~~L~~L~Ls~n~--------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 90 IQADTFRHLHHLEVLQLGRNS--------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSC--------CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred ECHHHcCCCCCCCEEECCCCc--------cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 344455555555555553322 223332 34455555555555555554432 2 5555555555555544
Q ss_pred ccc-ccccCccCceecccc
Q 017858 329 LWH-CVKHYSKLNQIIHAA 346 (365)
Q Consensus 329 lp~-~i~~l~~L~~L~l~~ 346 (365)
+|. .+..+++|++|++++
T Consensus 162 ~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp ECTTTTTTCTTCCEEECCC
T ss_pred eCHhHHhcCCcccEEeCCC
Confidence 433 233344444444443
No 39
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.02 E-value=2.4e-10 Score=103.57 Aligned_cols=116 Identities=11% Similarity=0.073 Sum_probs=74.6
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC----CCCCcccEEEEeCCCCCCCCCCCC
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD----PGFAEVKYLHWYGYPLKSLPSNLS 312 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~----~~l~~L~~L~l~~~~i~~lp~~~~ 312 (365)
..++.+.+..+.+ ..+++..|..+++|+.|++++|. ++.++. ..+++|++|++++|.+..+|....
T Consensus 120 ~~L~~L~l~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 189 (317)
T 3o53_A 120 QGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNE--------IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189 (317)
T ss_dssp SSCEEEECCSSCC--CSGGGBCTGGGSSEEEEECTTSC--------CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred CCCCEEECCCCCC--CCccchhhhccCCCCEEECCCCC--------CCcccHHHHhhccCcCCEEECCCCcCcccccccc
Confidence 3455555554443 23344566667777777774443 333322 345777777777777777765555
Q ss_pred CCCceEEeccCCcccccccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
+++|++|++++|.+..+|..+..+++|++|++++|. ++ .+|. ++.+++|+
T Consensus 190 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LV-LIEKALRFSQNLE 240 (317)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CC-EECTTCCCCTTCC
T ss_pred cccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-cc-chhhHhhcCCCCC
Confidence 777777777777777777777777777777777776 56 5666 66666664
No 40
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.02 E-value=3.4e-10 Score=92.58 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=88.1
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccc-cCC--CCCCcccEEEEeCCCCCCCC--C
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISY-LQD--PGFAEVKYLHWYGYPLKSLP--S 309 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-lp~--~~l~~L~~L~l~~~~i~~lp--~ 309 (365)
..+.++.+.+..+.+... ..|..+++|++|++++|. ++. +|. ..+++|++|++++|.+..+| .
T Consensus 47 ~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 114 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENR--------IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114 (168)
T ss_dssp GGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCC--------CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGG
T ss_pred hCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCc--------CchHHHHHHhhCCCCCEEeccCCccCcchhHH
Confidence 346677787777765433 678899999999996555 444 555 55899999999999999987 5
Q ss_pred CC-CCCCceEEeccCCccccccc----ccccCccCceecccccccccccCCC
Q 017858 310 NL-SAKKLVLVEVPDSDIERLWH----CVKHYSKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 310 ~~-~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~~~~l~~~lp~ 356 (365)
.+ .+++|++|++++|.+..+|. .+..+++|++|++++|. .. .+|+
T Consensus 115 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~-~~~~ 164 (168)
T 2ell_A 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQ-EAPD 164 (168)
T ss_dssp GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SC-BCCS
T ss_pred HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hh-hccc
Confidence 66 49999999999999999987 78999999999999998 66 6775
No 41
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.01 E-value=6.3e-10 Score=98.05 Aligned_cols=113 Identities=19% Similarity=0.301 Sum_probs=85.9
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCCCCC
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNLSAK 314 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~~l~ 314 (365)
...++.+.+..+.+.. +++ +..+++|+.|++++| .++.+|. .. ++|++|++++|.++.+|...+++
T Consensus 62 l~~L~~L~L~~N~i~~--~~~--l~~l~~L~~L~L~~N--------~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~ 128 (263)
T 1xeu_A 62 FTNLKELHLSHNQISD--LSP--LKDLTKLEELSVNRN--------RLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLK 128 (263)
T ss_dssp CTTCCEEECCSSCCCC--CGG--GTTCSSCCEEECCSS--------CCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCT
T ss_pred CCCCCEEECCCCccCC--Chh--hccCCCCCEEECCCC--------ccCCcCcccc-CcccEEEccCCccCCChhhcCcc
Confidence 4566777666665543 222 788888999999544 4556666 44 88999999999988886422599
Q ss_pred CceEEeccCCcccccccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 315 KLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 315 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
+|++|++++|.+..+| .+..+++|++|++++|. +. .++.++.+++|+
T Consensus 129 ~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~-~~~~l~~l~~L~ 175 (263)
T 1xeu_A 129 NLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-IT-NTGGLTRLKKVN 175 (263)
T ss_dssp TCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CC-BCTTSTTCCCCC
T ss_pred cccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-Cc-chHHhccCCCCC
Confidence 9999999999998887 68889999999999998 66 565588887775
No 42
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.4e-09 Score=89.61 Aligned_cols=92 Identities=13% Similarity=0.261 Sum_probs=77.6
Q ss_pred CCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccccccc-cccC
Q 017858 263 PKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKHY 336 (365)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~lp~~-i~~l 336 (365)
++|+.|++++|. ++.+|. ..+++|++|++++|.+..+|... ++++|++|++++|.+..+|.. +..+
T Consensus 28 ~~l~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 28 SSATRLELESNK--------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp TTCSEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEeCCCc--------ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 689999995444 555665 67899999999999999998765 499999999999999998765 5899
Q ss_pred ccCceecccccccccccCCC--CCCCCCCC
Q 017858 337 SKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 337 ~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
++|++|++++|. ++ .+|. +..+++|+
T Consensus 100 ~~L~~L~l~~N~-l~-~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 100 TQLKELALDTNQ-LK-SVPDGIFDRLTSLQ 127 (177)
T ss_dssp TTCCEEECCSSC-CS-CCCTTTTTTCTTCC
T ss_pred cccCEEECcCCc-ce-EeCHHHhcCCcccC
Confidence 999999999998 77 6775 68888876
No 43
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.01 E-value=5e-10 Score=94.16 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=76.9
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCC-CCCCC-CCC
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKS-LPSNL-SAK 314 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~-lp~~~-~l~ 314 (365)
.++.+.+..+.+. .++ .+..+++|+.|++++| .++.++. ..+++|++|++++|.+.. .|..+ +++
T Consensus 45 ~L~~L~l~~n~i~--~l~--~l~~l~~L~~L~l~~n--------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 45 SLTYITLANINVT--DLT--GIEYAHNIKDLTINNI--------HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp TCCEEEEESSCCS--CCT--TGGGCTTCSEEEEESC--------CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred CccEEeccCCCcc--ChH--HHhcCCCCCEEEccCC--------CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 3455555555443 222 4667778888888433 2434555 677788888888888775 55566 478
Q ss_pred CceEEeccCCcccc-cccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 315 KLVLVEVPDSDIER-LWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 315 ~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
+|++|++++|.+.. .|..++.+++|++|++++|..++ .+|.++.+++|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~l~~l~~L~ 162 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELK 162 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCGGGGGCSSCC
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccHhhcCCCCCC
Confidence 88888888887754 56777788888888888886566 676666666664
No 44
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=1.1e-09 Score=91.84 Aligned_cols=92 Identities=5% Similarity=0.146 Sum_probs=78.2
Q ss_pred CCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCC-C-CCCCceEEeccCCccccccc-ccccCc
Q 017858 263 PKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWH-CVKHYS 337 (365)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~-~-~l~~L~~L~l~~~~l~~lp~-~i~~l~ 337 (365)
++|+.|++++ + .++.+|. ..+++|++|++++|.++.++.. + ++++|++|+|++|.+..+|. .+..++
T Consensus 31 ~~l~~L~L~~-n-------~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDG-N-------QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102 (193)
T ss_dssp TTCCEEECCS-S-------CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred CCCCEEECCC-C-------cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCC
Confidence 5899999954 4 4667776 7889999999999999998865 4 49999999999999988855 689999
Q ss_pred cCceecccccccccccCCC--CCCCCCCC
Q 017858 338 KLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 338 ~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
+|++|++++|. ++ .+|. |..+++|+
T Consensus 103 ~L~~L~L~~N~-l~-~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 103 SLRLLSLHGND-IS-VVPEGAFNDLSALS 129 (193)
T ss_dssp TCCEEECCSSC-CC-BCCTTTTTTCTTCC
T ss_pred CCCEEECCCCC-CC-eeChhhhhcCcccc
Confidence 99999999998 66 6775 88888875
No 45
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.00 E-value=1.7e-09 Score=91.61 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=84.3
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL 311 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~ 311 (365)
....++.+.+..+.+. .+++..|..+++|++|++++|. ++.+|. ..+++|++|++++|.+..+|...
T Consensus 50 ~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 119 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQ--------LQSLPNGVFDKLTQLKELALNTNQLQSLPDGV 119 (208)
T ss_dssp TCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccccCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCc--------CCccCHhHhcCccCCCEEEcCCCcCcccCHhH
Confidence 4566777777666553 5667778899999999995444 556665 67899999999999999998764
Q ss_pred -C-CCCceEEeccCCcccccccc-cccCccCceecccccc
Q 017858 312 -S-AKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACN 348 (365)
Q Consensus 312 -~-l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 348 (365)
. +++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 4 99999999999999888765 6889999999999875
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.00 E-value=7.3e-10 Score=103.27 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=28.6
Q ss_pred CCCCcccEEEEeCCCCCCCCCCC-C-CCCceEEeccCCccccc-ccccccCccCceecccccc
Q 017858 289 PGFAEVKYLHWYGYPLKSLPSNL-S-AKKLVLVEVPDSDIERL-WHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp~~~-~-l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 348 (365)
..+++|++|++++|.+..+|..+ . +++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence 34444555555555555554443 2 45555555555544444 2234445555555555444
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.00 E-value=1e-09 Score=104.07 Aligned_cols=100 Identities=20% Similarity=0.364 Sum_probs=51.5
Q ss_pred CccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCC-cccc
Q 017858 255 NPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDS-DIER 328 (365)
Q Consensus 255 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~-~l~~ 328 (365)
.+..|.++++|+.|++++| .++.+|. ..+++|++|++++|.+..+|... .+++|++|++++| .+..
T Consensus 104 ~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 104 EIGAFNGLANLNTLELFDN--------RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175 (440)
T ss_dssp CGGGGTTCSSCCEEECCSS--------CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred ChhhccCCccCCEEECCCC--------cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce
Confidence 3344555555555555322 2333333 44455555555555555554432 2555555555553 4444
Q ss_pred ccc-ccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 329 LWH-CVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 329 lp~-~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
+|. .+..+++|++|++++|. ++ .+|.+..+++|+
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~-l~-~~~~~~~l~~L~ 210 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCN-LR-EIPNLTPLIKLD 210 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSC-CS-SCCCCTTCSSCC
T ss_pred eCcchhhcccccCeecCCCCc-Cc-cccccCCCcccC
Confidence 433 34566666666666665 55 566655555554
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.99 E-value=1.4e-09 Score=103.46 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=37.9
Q ss_pred CCCCcccEEEEeCCCCCCCC-CCC-CCCCceEEeccCCccccc-ccccccCccCceecccccccccccCCC--CCCCCCC
Q 017858 289 PGFAEVKYLHWYGYPLKSLP-SNL-SAKKLVLVEVPDSDIERL-WHCVKHYSKLNQIIHAACNMLTAKIPN--PTLMPRM 363 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp-~~~-~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L 363 (365)
..+++|++|++++|.+..++ ..+ ++++|++|++++|.+..+ |..+..+++|++|++++|. ++ .+|. |..+++|
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L 292 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LS-SLPHDLFTPLRYL 292 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CS-CCCTTSSTTCTTC
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CC-ccChHHhccccCC
Confidence 44445555555555554442 223 255555555555555444 3345556666666666665 44 4443 5555555
Q ss_pred C
Q 017858 364 K 364 (365)
Q Consensus 364 ~ 364 (365)
+
T Consensus 293 ~ 293 (452)
T 3zyi_A 293 V 293 (452)
T ss_dssp C
T ss_pred C
Confidence 3
No 49
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.99 E-value=1.6e-09 Score=95.48 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=59.5
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC-C
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL-S 312 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~-~ 312 (365)
..+.++.+.+..+.+... +. +.. ++|+.|++++| .++.++. ..+++|++|++++|.++.+| .+ .
T Consensus 83 ~l~~L~~L~L~~N~l~~l--~~--~~~-~~L~~L~L~~N--------~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~ 148 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKNL--NG--IPS-ACLSRLFLDNN--------ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGF 148 (263)
T ss_dssp TCSSCCEEECCSSCCSCC--TT--CCC-SSCCEEECCSS--------CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGG
T ss_pred cCCCCCEEECCCCccCCc--Cc--ccc-CcccEEEccCC--------ccCCChhhcCcccccEEECCCCcCCCCh-HHcc
Confidence 345556665555544332 11 122 66777777433 3444555 66677777777777776665 34 4
Q ss_pred CCCceEEeccCCcccccccccccCccCceecccccc
Q 017858 313 AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
+++|++|++++|.+..+ ..+..+++|++|++++|.
T Consensus 149 l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred CCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 67777777777776666 456667777777777766
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.99 E-value=1.5e-09 Score=102.99 Aligned_cols=97 Identities=19% Similarity=0.286 Sum_probs=58.1
Q ss_pred ccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCC-CCC-CCCCceEEeccCCccccc-cccc
Q 017858 258 TFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLP-SNL-SAKKLVLVEVPDSDIERL-WHCV 333 (365)
Q Consensus 258 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp-~~~-~l~~L~~L~l~~~~l~~l-p~~i 333 (365)
.|.++++|+.|+++ ++ .++.+|. ..+++|++|++++|.+..++ ..+ ++++|+.|++++|.+..+ |..+
T Consensus 180 ~~~~l~~L~~L~L~-~n-------~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 180 AFEGLSNLRYLNLA-MC-------NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp TTTTCSSCCEEECT-TS-------CCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred hhhcccccCeecCC-CC-------cCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh
Confidence 44445555555552 22 3445555 55666666666666666553 334 366777777777766655 4456
Q ss_pred ccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 334 KHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 334 ~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
..+++|++|++++|. ++ .+|. |..+++|+
T Consensus 252 ~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 252 DNLQSLVEINLAHNN-LT-LLPHDLFTPLHHLE 282 (440)
T ss_dssp TTCTTCCEEECTTSC-CC-CCCTTTTSSCTTCC
T ss_pred cCCCCCCEEECCCCC-CC-ccChhHhccccCCC
Confidence 677777777777776 55 5553 66666664
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=8.2e-10 Score=108.89 Aligned_cols=86 Identities=17% Similarity=0.249 Sum_probs=41.5
Q ss_pred CccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC-C-CCCceEEeccCCccccc
Q 017858 255 NPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL-S-AKKLVLVEVPDSDIERL 329 (365)
Q Consensus 255 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~-~-l~~L~~L~l~~~~l~~l 329 (365)
++..|..+++|++|++++|. ++.+|+ ..+++|++|++++|.+..+|..+ + +++|++|++++|.+..+
T Consensus 91 ~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 91 DTYAFAYAHTIQKLYMGFNA--------IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred ChHHhcCCCCCCEEECCCCc--------CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 33445555555555553222 223333 34455555555555555555443 2 55555555555555444
Q ss_pred c-cccccCccCceecccccc
Q 017858 330 W-HCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 330 p-~~i~~l~~L~~L~l~~~~ 348 (365)
| ..++.+++|++|++++|.
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSC
T ss_pred ChhhhhcCCcCcEEECcCCC
Confidence 2 234555555555555554
No 52
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.98 E-value=1.8e-09 Score=92.49 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=85.5
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCC-
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSN- 310 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~- 310 (365)
....++.+.+..+.+ ..+.+..|.++++|++|++++| .++.+|. ..+++|++|++++|.+..++..
T Consensus 54 ~l~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N--------~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 123 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGN--------KITELPKSLFEGLFSLQLLLLNANKINCLRVDA 123 (220)
T ss_dssp TCTTCCEEECCSSCC--CEECTTTTTTCSSCCEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCEEECCCCcC--CCcCHHHhhCCcCCCEEECCCC--------cCCccCHhHccCCCCCCEEECCCCCCCEeCHHH
Confidence 345677776666655 4566788999999999999544 4667777 6789999999999999988654
Q ss_pred C-CCCCceEEeccCCcccccccc-cccCccCceecccccc
Q 017858 311 L-SAKKLVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACN 348 (365)
Q Consensus 311 ~-~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 348 (365)
+ ++++|++|+|++|.+..+|.. +..+++|++|++++|.
T Consensus 124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5 499999999999999998664 7889999999999986
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.98 E-value=4.2e-10 Score=103.48 Aligned_cols=100 Identities=16% Similarity=0.282 Sum_probs=49.6
Q ss_pred CccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCC--CC-CCCCceEEeccCC-ccc
Q 017858 255 NPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPS--NL-SAKKLVLVEVPDS-DIE 327 (365)
Q Consensus 255 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~--~~-~l~~L~~L~l~~~-~l~ 327 (365)
.+..|.++++|++|++++| .++.+|. ..+++|++|++++|.+..+|. .+ ++++|++|++++| .+.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYN--------YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp CTTTTTTCTTCCEEECCSS--------CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred CHhhcCCCCCCCEEECCCC--------cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence 3444555555555555322 2333433 445555555555555555554 23 2555555555555 344
Q ss_pred cc-ccccccCccCceecccccccccccCCC-CCCCCCC
Q 017858 328 RL-WHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRM 363 (365)
Q Consensus 328 ~l-p~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L 363 (365)
.+ |..+..+++|++|++++|.... ..|. ++.+++|
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L 200 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQS-YEPKSLKSIQNV 200 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCSEE
T ss_pred ccCHHHccCCCCCCEEECCCCCcCc-cCHHHHhccccC
Confidence 44 3345555555666665555222 3344 5555444
No 54
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=2.7e-10 Score=114.67 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=89.0
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCCC
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNLS 312 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~~ 312 (365)
....++.+.+..+.+. .++.. +.++++|+.|+|++ + .++.+|. ..+++|++|+|++|.+..+|..++
T Consensus 222 ~l~~L~~L~Ls~n~l~--~l~~~-~~~l~~L~~L~Ls~-N-------~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF--NISAN-IFKYDFLTRLYLNG-N-------SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp CCCCCCEEECTTSCCS--CCCGG-GGGCCSCSCCBCTT-S-------CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred cCCCCcEEECCCCCCC--CCChh-hcCCCCCCEEEeeC-C-------cCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 4455667766655543 45444 44899999999954 4 4667887 789999999999999999999994
Q ss_pred -CCCceEEeccCCcccccccccccCccCceecccccccccccCCC
Q 017858 313 -AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 313 -l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~ 356 (365)
+.+|++|+|++|.+..+|.+++.|++|++|+|++|.... .+|.
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~p~ 334 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK-QFLK 334 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS-HHHH
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC-CChH
Confidence 999999999999999999999999999999999998443 4443
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.97 E-value=1.3e-09 Score=98.43 Aligned_cols=114 Identities=14% Similarity=0.249 Sum_probs=68.7
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCCCCC
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNLSAK 314 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~~l~ 314 (365)
...++.+.+..+.+... +.+..+++|+.|++++ + .++.++. ..+++|++|++++|.+..+|....++
T Consensus 84 l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~l~~-n-------~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~ 151 (308)
T 1h6u_A 84 LTKITELELSGNPLKNV----SAIAGLQSIKTLDLTS-T-------QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT 151 (308)
T ss_dssp CCSCCEEECCSCCCSCC----GGGTTCTTCCEEECTT-S-------CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred CCCCCEEEccCCcCCCc----hhhcCCCCCCEEECCC-C-------CCCCchhhcCCCCCCEEECCCCccCcCccccCCC
Confidence 34455555554444322 2456666666666633 3 3444555 66667777777777776666522467
Q ss_pred CceEEeccCCcccccccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 315 KLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 315 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
+|++|++++|.+..+|. +..+++|++|++++|. +. .+|.+..+++|+
T Consensus 152 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~-~~~~l~~l~~L~ 198 (308)
T 1h6u_A 152 NLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-IS-DISPLASLPNLI 198 (308)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CC-CCGGGGGCTTCC
T ss_pred CccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cC-cChhhcCCCCCC
Confidence 77777777777766655 6677777777777776 55 555555555554
No 56
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.97 E-value=1.1e-09 Score=97.99 Aligned_cols=114 Identities=16% Similarity=0.255 Sum_probs=80.1
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC-C
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL-S 312 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~-~ 312 (365)
....++.+.+..+..... +.+..+++|+.|++++| .++.++. ..+++|++|++++|.+..++ .+ .
T Consensus 88 ~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~n--------~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~ 154 (291)
T 1h6t_A 88 NLKNLGWLFLDENKVKDL----SSLKDLKKLKSLSLEHN--------GISDINGLVHLPQLESLYLGNNKITDIT-VLSR 154 (291)
T ss_dssp TCTTCCEEECCSSCCCCG----GGGTTCTTCCEEECTTS--------CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGG
T ss_pred cCCCCCEEECCCCcCCCC----hhhccCCCCCEEECCCC--------cCCCChhhcCCCCCCEEEccCCcCCcch-hhcc
Confidence 345566666655554332 23677777788887433 3445555 67788888888888887773 44 4
Q ss_pred CCCceEEeccCCcccccccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
+++|++|++++|.+..++. +..+++|++|++++|. ++ .+|.+..+++|+
T Consensus 155 l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~-~l~~l~~l~~L~ 203 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-IS-DLRALAGLKNLD 203 (291)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CC-BCGGGTTCTTCS
T ss_pred CCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CC-CChhhccCCCCC
Confidence 8888888888888877765 8888888888888887 66 677777777765
No 57
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.97 E-value=1.7e-09 Score=92.64 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=84.9
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCC-CCC
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLP-SNL 311 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp-~~~ 311 (365)
...++.+.+..+.+ ..+++..|.++++|+.|++++|. ++.++. ..+++|++|++++|.+..++ ..+
T Consensus 56 l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 125 (220)
T 2v70_A 56 LPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLTSNR--------LENVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125 (220)
T ss_dssp CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSC--------CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred CCCCCEEECCCCcC--CEECHHHhCCCCCCCEEECCCCc--------cCccCHhHhcCCcCCCEEECCCCcCCeECHhHc
Confidence 45667776666654 45667789999999999996554 555655 67899999999999999885 455
Q ss_pred -CCCCceEEeccCCccccc-ccccccCccCceecccccc
Q 017858 312 -SAKKLVLVEVPDSDIERL-WHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 312 -~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 348 (365)
++.+|++|+|++|.+..+ |..+..+++|++|++++|.
T Consensus 126 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 499999999999999888 7788999999999999997
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.97 E-value=1.1e-09 Score=107.13 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=27.6
Q ss_pred CCCCcccEEEEeCCCCCCCCC-CC-CCCCceEEeccCCcccc--cccccccCccCceecccccc
Q 017858 289 PGFAEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIER--LWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp~-~~-~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~ 348 (365)
..+++|++|++++|.+..+|. .+ ++++|++|++++|.+.. +|..++++++|++|++++|.
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 334444444444444444443 22 24445555555444432 34444445555555555444
No 59
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.97 E-value=1.3e-09 Score=97.54 Aligned_cols=100 Identities=15% Similarity=0.232 Sum_probs=62.4
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC-C
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL-S 312 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~-~ 312 (365)
....++.+.+..+.+... +.+..+++|+.|++++|. ++.++. ..+++|++|++++|.+..++. + +
T Consensus 110 ~l~~L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~--------l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~ 176 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNK--------ITDITVLSRLTKLDTLSLEDNQISDIVP-LAG 176 (291)
T ss_dssp TCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSC--------CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred cCCCCCEEECCCCcCCCC----hhhcCCCCCCEEEccCCc--------CCcchhhccCCCCCEEEccCCccccchh-hcC
Confidence 345566665555544332 345666777777774332 334444 666677777777777766655 4 4
Q ss_pred CCCceEEeccCCcccccccccccCccCceecccccc
Q 017858 313 AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
+++|++|++++|.+..+|. +..+++|+.|++++|.
T Consensus 177 l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred CCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 7777777777777766653 6667777777777765
No 60
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=5.8e-10 Score=108.95 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=79.7
Q ss_pred CCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcccccccccccCccCce
Q 017858 264 KLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDIERLWHCVKHYSKLNQ 341 (365)
Q Consensus 264 ~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 341 (365)
.|++|++++| .++.+|. ..+++|++|++++|.+..+|..++ +++|++|+|++|.+..+| +++.+++|++
T Consensus 442 ~L~~L~Ls~n--------~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHK--------DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQE 512 (567)
T ss_dssp TCSEEECTTS--------CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCE
T ss_pred CceEEEecCC--------CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcE
Confidence 5889999544 4667888 888999999999999999999885 999999999999999999 8999999999
Q ss_pred ecccccccccccC--CC-CCCCCCCC
Q 017858 342 IIHAACNMLTAKI--PN-PTLMPRMK 364 (365)
Q Consensus 342 L~l~~~~~l~~~l--p~-~~~l~~L~ 364 (365)
|++++|. ++ .+ |. ++.+++|+
T Consensus 513 L~Ls~N~-l~-~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 513 LLLCNNR-LQ-QSAAIQPLVSCPRLV 536 (567)
T ss_dssp EECCSSC-CC-SSSTTGGGGGCTTCC
T ss_pred EECCCCC-CC-CCCCcHHHhcCCCCC
Confidence 9999998 66 55 76 99998886
No 61
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.96 E-value=2.1e-09 Score=97.84 Aligned_cols=117 Identities=12% Similarity=0.204 Sum_probs=64.8
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCC-------------ccccccccCC---CCCCcccEEEEe
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGK-------------NKCKISYLQD---PGFAEVKYLHWY 300 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------~~~~l~~lp~---~~l~~L~~L~l~ 300 (365)
..++.+.+..+......+.+..|.++++|+.|++++|..... ....++.++. ..+++|++|+++
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 344555554444433334445555555566655533321110 0002333322 556667777777
Q ss_pred CCCCCCCCC-CC-CCCCceEEeccCCcccccccccccCccCceecccccccccccCC
Q 017858 301 GYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIP 355 (365)
Q Consensus 301 ~~~i~~lp~-~~-~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp 355 (365)
+|.+..++. .+ .+++|++|++++|.+..+|..+..+++|++|++++|. ++ .+|
T Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~-~~~ 279 (330)
T 1xku_A 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-IS-AIG 279 (330)
T ss_dssp SSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CC-CCC
T ss_pred CCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CC-ccC
Confidence 777666554 33 3677777777777777777777777777777777776 55 455
No 62
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=2.6e-09 Score=87.52 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=66.2
Q ss_pred CCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccccccc-cccC
Q 017858 263 PKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLWHC-VKHY 336 (365)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~lp~~-i~~l 336 (365)
+.|+.|++++|. ++.+++ ..+++|++|++++|.+..+|... ++++|++|+|++|.+..+|.. +..+
T Consensus 30 ~~l~~L~L~~N~--------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 101 (170)
T 3g39_A 30 TTTQVLYLYDNQ--------ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101 (170)
T ss_dssp TTCSEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEcCCCc--------CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCC
Confidence 788999995544 556644 67899999999999999998875 499999999999999998775 7899
Q ss_pred ccCceecccccc
Q 017858 337 SKLNQIIHAACN 348 (365)
Q Consensus 337 ~~L~~L~l~~~~ 348 (365)
++|++|++++|.
T Consensus 102 ~~L~~L~L~~N~ 113 (170)
T 3g39_A 102 KSLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEEeCCCC
Confidence 999999999986
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.95 E-value=5.8e-10 Score=107.19 Aligned_cols=116 Identities=11% Similarity=0.062 Sum_probs=78.7
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccc-cCC---CCCCcccEEEEeCCCCCCCCCCCC
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISY-LQD---PGFAEVKYLHWYGYPLKSLPSNLS 312 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-lp~---~~l~~L~~L~l~~~~i~~lp~~~~ 312 (365)
+.++.+.+..+.+ ..+.+..|..+++|+.|++++|. ++. .|. ..+++|++|++++|.+..+|....
T Consensus 120 ~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (487)
T 3oja_A 120 QGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNE--------IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189 (487)
T ss_dssp SSCEEEECCSSCC--CSGGGBCGGGGSSEEEEECTTSC--------CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred CCCCEEECCCCCC--CCCCchhhcCCCCCCEEECCCCC--------CCCcChHHHhhhCCcccEEecCCCcccccccccc
Confidence 4456665555544 23445566777788888885444 222 222 256778888888888777766556
Q ss_pred CCCceEEeccCCcccccccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
+++|++|+|++|.+..+|..+..+++|+.|++++|. +. .+|. ++.+++|+
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~-~lp~~l~~l~~L~ 240 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LV-LIEKALRFSQNLE 240 (487)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CC-EECTTCCCCTTCC
T ss_pred CCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Cc-ccchhhccCCCCC
Confidence 778888888888887777777778888888888877 66 5676 76666664
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.95 E-value=2.4e-09 Score=102.53 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=69.0
Q ss_pred EEEEeeccccccccccCccccCCCCCCceEEEecCccCCCcccccccc-CC--CCCCcccEEEEeCCCCCCCCCCC--CC
Q 017858 239 IEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYL-QD--PGFAEVKYLHWYGYPLKSLPSNL--SA 313 (365)
Q Consensus 239 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-p~--~~l~~L~~L~l~~~~i~~lp~~~--~l 313 (365)
++.+.+..+.+ ..+.+..|.++++|+.|++++|. ++.+ |. ..+++|++|++++|.+..+|... ++
T Consensus 34 l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~--------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 34 TRLLDLGKNRI--KTLNQDEFASFPHLEELELNENI--------VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CcEEECCCCcc--ceECHhHccCCCCCCEEECCCCc--------cCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 44444444433 34455667777777777774333 3344 22 56677777777777777776653 37
Q ss_pred CCceEEeccCCccccc-ccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 314 KKLVLVEVPDSDIERL-WHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 314 ~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
++|++|++++|.+..+ |..+..+++|++|++++|.... ..|. |+.+++|+
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 155 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLE 155 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCC
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCC
Confidence 7777777777766554 4456667777777777666222 3333 66665554
No 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.95 E-value=2e-09 Score=99.28 Aligned_cols=115 Identities=16% Similarity=0.290 Sum_probs=90.3
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCC-C
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPS-N 310 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~-~ 310 (365)
....++.+.+..+.+ ..+++..|.++++|+.|+|++|. ++.++. ..+++|++|++++|.+..+++ .
T Consensus 62 ~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 131 (361)
T 2xot_A 62 RLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNH--------LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA 131 (361)
T ss_dssp CCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSC--------CCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCc--------CCcCCHHHhCCCcCCCEEECCCCcccEECHHH
Confidence 456677777666655 45667789999999999996554 556665 678999999999999998754 5
Q ss_pred C-CCCCceEEeccCCccccccccc----ccCccCceecccccccccccCCC--CCCCC
Q 017858 311 L-SAKKLVLVEVPDSDIERLWHCV----KHYSKLNQIIHAACNMLTAKIPN--PTLMP 361 (365)
Q Consensus 311 ~-~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~l~~~lp~--~~~l~ 361 (365)
+ ++.+|++|+|++|.+..+|..+ ..+++|++|++++|. ++ .+|. +..++
T Consensus 132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~l~~~~~~~l~ 187 (361)
T 2xot_A 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LK-KLPLTDLQKLP 187 (361)
T ss_dssp TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CC-CCCHHHHHHSC
T ss_pred hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CC-ccCHHHhhhcc
Confidence 5 4999999999999999998876 579999999999998 77 6773 54443
No 66
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=8.2e-10 Score=91.06 Aligned_cols=97 Identities=13% Similarity=0.238 Sum_probs=79.8
Q ss_pred cccCCCCCCceEEEecCccCCCccccccccCC-CCC-CcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCccccccccc
Q 017858 257 STFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGF-AEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCV 333 (365)
Q Consensus 257 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l-~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~lp~~i 333 (365)
..+..+.+|+.|+++ ++ .++.+|. ..+ ++|++|++++|.+..+ ..+ .+++|++|++++|.+..+|.++
T Consensus 13 ~~~~~~~~L~~L~l~-~n-------~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLR-GY-------KIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECT-TS-------CCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEee-CC-------CCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 456678899999995 44 4556766 555 4999999999999988 455 5999999999999999998776
Q ss_pred -ccCccCceecccccccccccCCC---CCCCCCCC
Q 017858 334 -KHYSKLNQIIHAACNMLTAKIPN---PTLMPRMK 364 (365)
Q Consensus 334 -~~l~~L~~L~l~~~~~l~~~lp~---~~~l~~L~ 364 (365)
..+++|++|++++|. ++ .+|. ++.+++|+
T Consensus 84 ~~~l~~L~~L~L~~N~-i~-~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LV-ELGDLDPLASLKSLT 116 (176)
T ss_dssp HHHCTTCCEEECCSCC-CC-CGGGGGGGGGCTTCC
T ss_pred hhcCCCCCEEECCCCc-CC-cchhhHhhhcCCCCC
Confidence 899999999999998 67 7774 77777765
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.94 E-value=1.7e-09 Score=97.60 Aligned_cols=115 Identities=15% Similarity=0.283 Sum_probs=90.9
Q ss_pred CCCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC-
Q 017858 234 TGTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL- 311 (365)
Q Consensus 234 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~- 311 (365)
.....++.+.+..+.+... ..+..+++|+.|++++| .++.++. ..+++|++|++++|.+..+|. +
T Consensus 104 ~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n--------~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~ 170 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDV----TPLAGLSNLQVLYLDLN--------QITNISPLAGLTNLQYLSIGNAQVSDLTP-LA 170 (308)
T ss_dssp TTCTTCCEEECTTSCCCCC----GGGTTCTTCCEEECCSS--------CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred cCCCCCCEEECCCCCCCCc----hhhcCCCCCCEEECCCC--------ccCcCccccCCCCccEEEccCCcCCCChh-hc
Confidence 3456777787777665442 23888999999999544 3556666 778899999999999988887 5
Q ss_pred CCCCceEEeccCCcccccccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 312 SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
.+++|+.|++++|.+..+|. +..+++|++|++++|. +. .+|.+..+++|+
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~-l~-~~~~l~~l~~L~ 220 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ-IS-DVSPLANTSNLF 220 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC-CC-BCGGGTTCTTCC
T ss_pred CCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc-cC-ccccccCCCCCC
Confidence 58999999999999988875 8889999999999998 66 677677777775
No 68
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.94 E-value=1.9e-09 Score=102.48 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=81.4
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCC-CC-C
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPS-NL-S 312 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~-~~-~ 312 (365)
.++.+.+..+.. ..+.+..|..+++|+.|++++|. ++.++. ..+++|++|++++|.+..++. .+ +
T Consensus 276 ~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 276 GVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNE--------INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp CCCEEECCSSCC--CEECTTTTTTCTTCCEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred CceEEEecCccc--cccchhhcccCCCCCEEECCCCc--------ccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 455554444443 34456677888888888885443 444433 667888888888888877654 44 4
Q ss_pred CCCceEEeccCCccccc-ccccccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERL-WHCVKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
+++|++|++++|.+..+ |..+..+++|++|++++|. ++ .+|. ++.+++|+
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LK-SVPDGIFDRLTSLQ 398 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CS-CCCTTTTTTCTTCC
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCc-cc-cCCHhHhccCCccc
Confidence 88888888888888776 6677888888888888887 66 5664 67777775
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.94 E-value=1.6e-09 Score=93.82 Aligned_cols=101 Identities=14% Similarity=0.264 Sum_probs=47.2
Q ss_pred ceEEEEeecc-ccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCccc---EEEEeCC-CCCCCCCC
Q 017858 237 EKIEGICLDM-SKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVK---YLHWYGY-PLKSLPSN 310 (365)
Q Consensus 237 ~~~~~l~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~---~L~l~~~-~i~~lp~~ 310 (365)
..++.+.+.. +.+. .+++..|.++++|+.|++++|. ++.+|. ..+++|+ +|++++| .+..+|..
T Consensus 80 ~~L~~L~l~~~n~l~--~i~~~~f~~l~~L~~L~l~~n~--------l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~ 149 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLT--YIDPDALKELPLLKFLGIFNTG--------LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149 (239)
T ss_dssp TTCCEEEEEEETTCC--EECTTSEECCTTCCEEEEEEEC--------CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred cCCcEEECCCCCCee--EcCHHHhCCCCCCCEEeCCCCC--------CccccccccccccccccEEECCCCcchhhcCcc
Confidence 3444554443 3332 3344555666666666664333 223333 3333333 5555555 45544443
Q ss_pred -C-CCCCce-EEeccCCcccccccccccCccCceeccccc
Q 017858 311 -L-SAKKLV-LVEVPDSDIERLWHCVKHYSKLNQIIHAAC 347 (365)
Q Consensus 311 -~-~l~~L~-~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 347 (365)
+ ++++|+ +|++++|.+..+|......++|++|++++|
T Consensus 150 ~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp TTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred cccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 2 255555 555555555545444333344555555554
No 70
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=2.9e-09 Score=87.60 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=74.1
Q ss_pred ceEEEecCccCCCccccccccCCCCCCcccEEEEeCCCCCCCCC-CC-CCCCceEEeccCCccccccccc-ccCccCcee
Q 017858 266 RFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWHCV-KHYSKLNQI 342 (365)
Q Consensus 266 ~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~~i~~lp~-~~-~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L 342 (365)
+.++++ ++ .++.+|..-..+|++|++++|.+..+++ .+ ++++|++|+|++|++..+|..+ ..+++|++|
T Consensus 15 ~~l~~~-~n-------~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQ-NI-------RLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECC-SS-------CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeC-CC-------CCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 678884 44 4667887334889999999999999855 45 4999999999999999998775 899999999
Q ss_pred cccccccccccCCC--CCCCCCCC
Q 017858 343 IHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 343 ~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
++++|. ++ .+|. |+.+++|+
T Consensus 87 ~L~~N~-l~-~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 87 DLNDNH-LK-SIPRGAFDNLKSLT 108 (174)
T ss_dssp ECCSSC-CC-CCCTTTTTTCTTCS
T ss_pred ECCCCc-cc-eeCHHHhccccCCC
Confidence 999998 77 6775 88888886
No 71
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=3.5e-09 Score=86.81 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=74.3
Q ss_pred CceEEEecCccCCCccccccccCCCCCCcccEEEEeCCCCCCCCC-CC-CCCCceEEeccCCccccccccc-ccCccCce
Q 017858 265 LRFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWHCV-KHYSKLNQ 341 (365)
Q Consensus 265 L~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~~i~~lp~-~~-~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~ 341 (365)
.+.++++ ++ .++.+|..-..+|++|++++|.+..+++ .+ ++.+|++|+|++|.+..+|... ..+++|++
T Consensus 11 ~~~l~~s-~n-------~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCS-GK-------SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECT-TS-------CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeC-CC-------CcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 4678884 44 5667877334889999999999999855 45 4999999999999999997764 89999999
Q ss_pred ecccccccccccCCC--CCCCCCCC
Q 017858 342 IIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 342 L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
|++++|. ++ .+|. |+.+++|+
T Consensus 83 L~L~~N~-l~-~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 83 LSLNDNQ-LK-SIPRGAFDNLKSLT 105 (170)
T ss_dssp EECCSSC-CC-CCCTTTTTTCTTCC
T ss_pred EECCCCc-cC-EeCHHHhcCCCCCC
Confidence 9999998 66 6664 88888886
No 72
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.91 E-value=1e-09 Score=87.80 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=77.1
Q ss_pred CCCCCceEEEecCccCCCcccccc--ccCC--CCCCcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCcccc-cccccc
Q 017858 261 KMPKLRFLKFYRSSVNGKNKCKIS--YLQD--PGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIER-LWHCVK 334 (365)
Q Consensus 261 ~l~~L~~L~l~~~~~~~~~~~~l~--~lp~--~~l~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~-lp~~i~ 334 (365)
..++|+.|++++|. ++ .+|. ..+++|++|++++|.+..+ ..+ .+++|++|++++|.+.. +|..++
T Consensus 15 ~~~~l~~L~l~~n~--------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 15 TPSDVKELVLDNSR--------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp CGGGCSEEECTTCB--------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred CCccCeEEEccCCc--------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 34779999995444 44 5666 7889999999999999988 555 59999999999999987 788888
Q ss_pred cCccCceecccccccccccCC--C-CCCCCCCC
Q 017858 335 HYSKLNQIIHAACNMLTAKIP--N-PTLMPRMK 364 (365)
Q Consensus 335 ~l~~L~~L~l~~~~~l~~~lp--~-~~~l~~L~ 364 (365)
.+++|++|++++|. ++ .+| . ++.+++|+
T Consensus 86 ~l~~L~~L~ls~N~-i~-~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 86 KCPNLTHLNLSGNK-IK-DLSTIEPLKKLENLK 116 (149)
T ss_dssp HCTTCCEEECTTSC-CC-SHHHHGGGGGCTTCC
T ss_pred hCCCCCEEECCCCc-CC-ChHHHHHHhhCCCCC
Confidence 89999999999998 66 554 4 88888776
No 73
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.91 E-value=3.4e-09 Score=88.68 Aligned_cols=92 Identities=9% Similarity=0.139 Sum_probs=75.6
Q ss_pred CCceEEEecCccCCCccccccccCC----CCCCcccEEEEeCCCCCCC-CCCC-CCCCceEEeccCCccccccc-ccccC
Q 017858 264 KLRFLKFYRSSVNGKNKCKISYLQD----PGFAEVKYLHWYGYPLKSL-PSNL-SAKKLVLVEVPDSDIERLWH-CVKHY 336 (365)
Q Consensus 264 ~L~~L~l~~~~~~~~~~~~l~~lp~----~~l~~L~~L~l~~~~i~~l-p~~~-~l~~L~~L~l~~~~l~~lp~-~i~~l 336 (365)
+|+.|++++|. ++.++. ..+++|++|++++|.+..+ |..+ ++.+|++|+|++|.+..+|. .+..+
T Consensus 30 ~l~~L~l~~n~--------i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 101 (192)
T 1w8a_A 30 HTTELLLNDNE--------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101 (192)
T ss_dssp TCSEEECCSCC--------CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred CCCEEECCCCc--------CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCC
Confidence 89999996554 445553 5679999999999999987 5566 49999999999999988855 47899
Q ss_pred ccCceecccccccccccCCC-CCCCCCCC
Q 017858 337 SKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 337 ~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
++|++|++++|.... ..|. |+.+++|+
T Consensus 102 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 102 HQLKTLNLYDNQISC-VMPGSFEHLNSLT 129 (192)
T ss_dssp TTCCEEECCSSCCCE-ECTTSSTTCTTCC
T ss_pred CCCCEEECCCCcCCe-eCHHHhhcCCCCC
Confidence 999999999998444 6676 88888876
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.90 E-value=2.4e-09 Score=94.85 Aligned_cols=101 Identities=19% Similarity=0.344 Sum_probs=54.5
Q ss_pred cCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCC-CC-CCCCceEEeccCCcccc
Q 017858 254 LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIER 328 (365)
Q Consensus 254 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~-~~-~l~~L~~L~l~~~~l~~ 328 (365)
+++..|.++++|++|++++| .++.++. ..+++|++|++++|.+..++. .+ ++++|++|++++|.+..
T Consensus 43 ~~~~~~~~l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 43 LGSYSFFSFPELQVLDLSRC--------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp ECTTTTTTCTTCSEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred cCHhHhccccCCcEEECCCC--------cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc
Confidence 33445556666666666332 2333333 445566666666666655543 23 36666666666666655
Q ss_pred ccc-ccccCccCceeccccccccccc--CCC-CCCCCCCC
Q 017858 329 LWH-CVKHYSKLNQIIHAACNMLTAK--IPN-PTLMPRMK 364 (365)
Q Consensus 329 lp~-~i~~l~~L~~L~l~~~~~l~~~--lp~-~~~l~~L~ 364 (365)
++. .++.+++|++|++++|. ++ . +|. ++.+++|+
T Consensus 115 ~~~~~~~~l~~L~~L~l~~n~-l~-~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 115 LENFPIGHLKTLKELNVAHNL-IQ-SFKLPEYFSNLTNLE 152 (276)
T ss_dssp STTCCCTTCTTCCEEECCSSC-CC-CCCCCGGGGGCTTCC
T ss_pred cCchhcccCCCCCEEECcCCc-cc-eecCchhhccCCCCC
Confidence 543 45666666666666665 33 2 344 55555554
No 75
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.89 E-value=1.6e-09 Score=99.50 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=79.4
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCC-C-C
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSN-L-S 312 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~-~-~ 312 (365)
.++.+.+..+.+ ..+++..|.++++|+.|++++|. ++.++. ..+++|++|++++|.+..+|.. + +
T Consensus 53 ~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 53 AVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNG--------INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred cCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCc--------cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 456665555544 34555677788888888884433 444433 6677888888888888877766 3 4
Q ss_pred CCCceEEeccCCccccccc--ccccCccCceecccccccccccCC-C-CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERLWH--CVKHYSKLNQIIHAACNMLTAKIP-N-PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~lp-~-~~~l~~L~ 364 (365)
+++|++|++++|.+..+|. .+..+++|++|++++|..++ .+| . ++++++|+
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLE 177 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCC
Confidence 7888888888888877776 56778888888888875455 443 3 77776654
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.89 E-value=2.6e-09 Score=109.61 Aligned_cols=118 Identities=11% Similarity=0.136 Sum_probs=83.9
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccC-C--CCCCcccEEEEeCCCCCCC-CCCC-
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQ-D--PGFAEVKYLHWYGYPLKSL-PSNL- 311 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp-~--~~l~~L~~L~l~~~~i~~l-p~~~- 311 (365)
+.++.+.+..+.+ ..+.+..|.++++|++|++++|. .+..++ . ..+++|++|++++|.+..+ |..+
T Consensus 24 ~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~-------~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 24 NTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQY-------TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp TTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTC-------CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCC-------CccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 4466666665554 34567788888899999996664 232453 3 7778888888888888876 5566
Q ss_pred CCCCceEEeccCCcccc-cccc--cccCccCceecccccccccccCC-C-CCCCCCCC
Q 017858 312 SAKKLVLVEVPDSDIER-LWHC--VKHYSKLNQIIHAACNMLTAKIP-N-PTLMPRMK 364 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~~lp-~-~~~l~~L~ 364 (365)
++++|++|+|++|.+.. +|.. ++++++|++|++++|.... ..| . |+++++|+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYLHPSFGKLNSLK 151 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC-CCCCGGGGTCSSCC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc-cccchhHhhCCCCC
Confidence 48888888888888754 4554 7888888888888887433 333 3 78887776
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.89 E-value=1.3e-09 Score=106.17 Aligned_cols=86 Identities=13% Similarity=0.167 Sum_probs=40.1
Q ss_pred CccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCC-C-CCCCceEEeccCCcccc-
Q 017858 255 NPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIER- 328 (365)
Q Consensus 255 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~-~-~l~~L~~L~l~~~~l~~- 328 (365)
.+..|.++++|++|++++|. ++.+++ ..+++|++|++++|.+..+|+. + ++++|++|++++|.+..
T Consensus 42 ~~~~~~~l~~L~~L~Ls~n~--------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 42 GHGDLRACANLQVLILKSSR--------INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113 (549)
T ss_dssp CSSTTSSCTTCCEEECTTSC--------CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS
T ss_pred ChhhhhcCCcccEEECCCCC--------cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc
Confidence 34445555555555553222 223322 4445555555555555544443 2 25555555555554442
Q ss_pred -cccccccCccCceecccccc
Q 017858 329 -LWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 329 -lp~~i~~l~~L~~L~l~~~~ 348 (365)
+|..++.+++|++|++++|.
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 114 GVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CSSCSCTTCTTCCEEEEEESS
T ss_pred chhhhhhccCCccEEECCCCc
Confidence 23444455555555555544
No 78
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.88 E-value=3.6e-09 Score=105.10 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=66.8
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CC-------CCcccEEEEeCCCCCCC
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PG-------FAEVKYLHWYGYPLKSL 307 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~-------l~~L~~L~l~~~~i~~l 307 (365)
.++.+.+..+.+. .++...+..+++|+.|++++|. ++.+|. .. +++|++|++++|.+..+
T Consensus 434 ~L~~L~Ls~N~l~--~lp~~~~~~l~~L~~L~Ls~N~--------l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 503 (636)
T 4eco_A 434 NVSSINLSNNQIS--KFPKELFSTGSPLSSINLMGNM--------LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503 (636)
T ss_dssp CEEEEECCSSCCC--SCCTHHHHTTCCCSEEECCSSC--------CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC
T ss_pred CCCEEECcCCccC--cCCHHHHccCCCCCEEECCCCC--------CCCcCHHHhccccccccccCCccEEECcCCcCCcc
Confidence 4555555444443 3445555566777777774333 334444 11 11666677777666666
Q ss_pred CCCC---CCCCceEEeccCCcccccccccccCccCceeccc------ccccccccCCC-CCCCCCCC
Q 017858 308 PSNL---SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHA------ACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 308 p~~~---~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~------~~~~l~~~lp~-~~~l~~L~ 364 (365)
|..+ .+++|++|++++|.+..+|..+..+++|++|+++ +|...+ .+|. ++.+++|+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~-~~p~~l~~l~~L~ 569 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR-EWPEGITLCPSLT 569 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC-CCCTTGGGCSSCC
T ss_pred ChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccc-cChHHHhcCCCCC
Confidence 6555 3666777777777666666666666666666663 344344 5665 66666554
No 79
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.88 E-value=1.9e-09 Score=97.41 Aligned_cols=99 Identities=10% Similarity=0.140 Sum_probs=50.6
Q ss_pred ccccCCCCCCceEEEecCccCCCcccccc-ccCC--CCCCcccEEEEeCCCCC-CCCCCC-CCC-CceEEeccCCccc-c
Q 017858 256 PSTFTKMPKLRFLKFYRSSVNGKNKCKIS-YLQD--PGFAEVKYLHWYGYPLK-SLPSNL-SAK-KLVLVEVPDSDIE-R 328 (365)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~lp~--~~l~~L~~L~l~~~~i~-~lp~~~-~l~-~L~~L~l~~~~l~-~ 328 (365)
+..|.++++|++|++++|. ++ .+|. ..+++|++|++++|.+. .+|..+ .+. +|++|++++|.+. .
T Consensus 118 p~~~~~l~~L~~L~Ls~N~--------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNA--------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp CGGGGGCTTCCEEECCSSE--------EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred CHHHhCCCCCCEEeCCCCc--------cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 4455556666666664333 22 2333 45556666666666655 455555 344 5666666666553 3
Q ss_pred cccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 329 LWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 329 lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
+|..+..++ |++|++++|.... ..|. ++.+++|+
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~-~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEG-DASVLFGSDKNTQ 224 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEE-CCGGGCCTTSCCS
T ss_pred CChHHhCCc-ccEEECcCCcccC-cCCHHHhcCCCCC
Confidence 455555544 5555555554222 3343 44444443
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.88 E-value=3.8e-09 Score=105.67 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=84.1
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCC-C-
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSN-L- 311 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~-~- 311 (365)
..++.+.+..+.+ ..+++..|.++++|++|++++|. ++.+++ ..+++|++|++++|.+..+|.. +
T Consensus 25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNT--------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSC--------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCc--------cCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 3456665555544 34566678888889999985444 334433 6678888888888888888874 5
Q ss_pred CCCCceEEeccCCcccccc-cccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 312 SAKKLVLVEVPDSDIERLW-HCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
++++|++|++++|.+..+| ..++.+++|++|++++|.... ..|. ++.+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQ 148 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCC
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc-cCchhhcccccCC
Confidence 4888888888888887775 567888888888888887333 4455 77777775
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.88 E-value=3.1e-09 Score=104.54 Aligned_cols=94 Identities=14% Similarity=0.221 Sum_probs=43.9
Q ss_pred ccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCccccccccccc
Q 017858 258 TFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKH 335 (365)
Q Consensus 258 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~lp~~i~~ 335 (365)
.+..+++|+.|+|++|. +..++. ..+++|+.|++++|.+..++ .+ .+++|+.|+|++|.+..++. +..
T Consensus 104 ~l~~l~~L~~L~Ls~N~--------l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~ 173 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNG--------ISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAG 173 (605)
T ss_dssp TSTTCTTCCEEECTTSC--------CCCCGGGGGCTTCSEEECCSSCCCCCG-GGGSCTTCSEEECCSSCCCCCGG-GTT
T ss_pred hhccCCCCCEEEecCCC--------CCCCccccCCCccCEEECCCCccCCch-hhcccCCCCEEECcCCcCCCchh-hcc
Confidence 34455555555553222 223333 44455555555555554442 22 35555555555555544433 445
Q ss_pred CccCceecccccccccccCCCCCCCCCC
Q 017858 336 YSKLNQIIHAACNMLTAKIPNPTLMPRM 363 (365)
Q Consensus 336 l~~L~~L~l~~~~~l~~~lp~~~~l~~L 363 (365)
+++|++|+|++|. +. .+|.++.+++|
T Consensus 174 l~~L~~L~Ls~N~-i~-~l~~l~~l~~L 199 (605)
T 1m9s_A 174 LTKLQNLYLSKNH-IS-DLRALAGLKNL 199 (605)
T ss_dssp CTTCCEEECCSSC-CC-BCGGGTTCTTC
T ss_pred CCCCCEEECcCCC-CC-CChHHccCCCC
Confidence 5555555555554 33 34444444444
No 82
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.88 E-value=4.2e-09 Score=94.69 Aligned_cols=98 Identities=15% Similarity=0.300 Sum_probs=65.1
Q ss_pred cccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCC--CCCCC-CCCCceEEeccCCccccc-
Q 017858 257 STFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKS--LPSNL-SAKKLVLVEVPDSDIERL- 329 (365)
Q Consensus 257 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~--lp~~~-~l~~L~~L~l~~~~l~~l- 329 (365)
..+..+++|++|++++|. +...+. ..+++|++|++++|.+.. +|..+ .+++|++|++++|.+..+
T Consensus 120 ~~~~~l~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTH--------TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp TTTTTCTTCCEEECTTSC--------CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred hhhhhccCCCEEECCCCc--------CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence 356667777777774333 323322 556777788887777664 66666 377888888888877666
Q ss_pred ccccccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 330 WHCVKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 330 p~~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
|..+..+++|++|++++|. ++ .+|. ++.+++|+
T Consensus 192 ~~~~~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNN-FF-SLDTFPYKCLNSLQ 226 (306)
T ss_dssp TTTTTTCTTCCEEECTTSC-CS-BCCSGGGTTCTTCC
T ss_pred HHHhcCCCCCCEEECCCCc-cC-ccChhhccCcccCC
Confidence 5667777888888888777 55 4543 66666665
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.88 E-value=2.4e-09 Score=105.83 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=92.1
Q ss_pred CCCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCC
Q 017858 234 TGTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSN 310 (365)
Q Consensus 234 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~ 310 (365)
.+.+.++.+.+..+.+ ..+++..|.++++|++|+|++ + +++.+|. ..+++|++|++++|.+..+|..
T Consensus 73 ~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~-N-------~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 142 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTG-N-------PIQSLALGAFSGLSSLQKLVAVETNLASLENF 142 (635)
T ss_dssp TTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTT-C-------CCCEECGGGGTTCTTCCEEECTTSCCCCSTTC
T ss_pred hCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccC-C-------cCCCCCHHHhcCCCCCCEEECCCCcCCCCChh
Confidence 3456778777666654 456788899999999999954 4 4667776 7889999999999999999875
Q ss_pred -CC-CCCceEEeccCCcccc--cccccccCccCceecccccccccccCCC-CCCC
Q 017858 311 -LS-AKKLVLVEVPDSDIER--LWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLM 360 (365)
Q Consensus 311 -~~-l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l 360 (365)
++ +++|++|++++|.+.. +|..++.+++|++|++++|. +++..|. ++.+
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L 196 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL 196 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH
T ss_pred hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccch
Confidence 44 9999999999999865 57888999999999999998 5413343 5443
No 84
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.87 E-value=8e-09 Score=92.82 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=88.1
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccc--cCC--CCCCcccEEEEeCCCCCCC-CC
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISY--LQD--PGFAEVKYLHWYGYPLKSL-PS 309 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--lp~--~~l~~L~~L~l~~~~i~~l-p~ 309 (365)
....++.+.+..+.. ....+..|..+++|+.|++++|. ++. +|. ..+++|++|++++|.+..+ |.
T Consensus 124 ~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~--------l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 193 (306)
T 2z66_A 124 SLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNS--------FQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193 (306)
T ss_dssp TCTTCCEEECTTSCC--EECSTTTTTTCTTCCEEECTTCE--------EGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred hccCCCEEECCCCcC--CccchhhcccCcCCCEEECCCCc--------cccccchhHHhhCcCCCEEECCCCCcCCcCHH
Confidence 345566666655544 33456678889999999995443 433 555 7788999999999998877 44
Q ss_pred CC-CCCCceEEeccCCccccccc-ccccCccCceecccccccccccCCC-CCCCC-CCC
Q 017858 310 NL-SAKKLVLVEVPDSDIERLWH-CVKHYSKLNQIIHAACNMLTAKIPN-PTLMP-RMK 364 (365)
Q Consensus 310 ~~-~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~-~L~ 364 (365)
.+ ++++|++|++++|.+..+|. .+..+++|++|++++|.... ..|. +..++ +|+
T Consensus 194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLA 251 (306)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB-CSSSSCCCCCTTCC
T ss_pred HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc-cCHHHHHhhhccCC
Confidence 55 48999999999999988755 67889999999999998444 5665 77774 664
No 85
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.86 E-value=2.9e-09 Score=105.03 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=91.0
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCcccccccc-CC--CCCCcccEEEEeCCCCCCCC-CC
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYL-QD--PGFAEVKYLHWYGYPLKSLP-SN 310 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-p~--~~l~~L~~L~l~~~~i~~lp-~~ 310 (365)
+...++.+.+..+.+ ..+.+..|.++++|++|++++|. ++.+ |. ..+++|++|++++|.+..+| ..
T Consensus 54 ~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~--------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 123 (606)
T 3vq2_A 54 NFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNP--------IQSFSPGSFSGLTSLENLVAVETKLASLESFP 123 (606)
T ss_dssp TCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCC--------CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC
T ss_pred CCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCc--------ccccChhhcCCcccCCEEEccCCccccccccc
Confidence 456677776666554 45667789999999999995444 5455 44 78899999999999998887 45
Q ss_pred CC-CCCceEEeccCCccc--ccccccccCccCceecccccccccccCCC-CCCCCCC
Q 017858 311 LS-AKKLVLVEVPDSDIE--RLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRM 363 (365)
Q Consensus 311 ~~-l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L 363 (365)
++ +.+|++|++++|.+. .+|..++++++|++|++++|. +++..|. ++.+++|
T Consensus 124 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLREN 179 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHC
T ss_pred cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhcc
Confidence 54 999999999999986 479999999999999999998 4414444 6555443
No 86
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.85 E-value=1.3e-08 Score=92.59 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=55.8
Q ss_pred EEEEeeccccccccccCccccCCCCCCceEEEecCccCCCcccccccc-CC--CCCCcccEEEEeCCCCCCCCCCCCCCC
Q 017858 239 IEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYL-QD--PGFAEVKYLHWYGYPLKSLPSNLSAKK 315 (365)
Q Consensus 239 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-p~--~~l~~L~~L~l~~~~i~~lp~~~~l~~ 315 (365)
++.+.+..+.+ ..+++..|.++++|++|++++|. ++.+ |. ..+++|++|++++|.+..+|..+. .+
T Consensus 56 l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~ 124 (332)
T 2ft3_A 56 TTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNK--------ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SS 124 (332)
T ss_dssp CCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSC--------CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TT
T ss_pred CeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCc--------cCccCHhHhhCcCCCCEEECCCCcCCccCcccc-cc
Confidence 44444443333 23445556666666777664332 3333 22 556666666666666666665544 56
Q ss_pred ceEEeccCCcccccccc-cccCccCceecccccc
Q 017858 316 LVLVEVPDSDIERLWHC-VKHYSKLNQIIHAACN 348 (365)
Q Consensus 316 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 348 (365)
|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 66666666666665443 4566666666666665
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=4.2e-09 Score=103.60 Aligned_cols=114 Identities=14% Similarity=0.257 Sum_probs=89.7
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCCCCC
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNLSAK 314 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~~l~ 314 (365)
.+.++.+.+..+.+.. +++ +..+++|+.|+|++| .+..+|. ..+++|++|++++|.+..+|....++
T Consensus 64 l~~L~~L~Ls~N~l~~--~~~--l~~l~~L~~L~Ls~N--------~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~ 131 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTD--IKP--LTNLKNLGWLFLDEN--------KIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 131 (605)
T ss_dssp CTTCCEEECTTSCCCC--CGG--GGGCTTCCEEECCSS--------CCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCT
T ss_pred CCCCCEEEeeCCCCCC--Chh--hccCCCCCEEECcCC--------CCCCChhhccCCCCCEEEecCCCCCCCccccCCC
Confidence 4567777776665543 222 788999999999544 3556677 88899999999999999886433599
Q ss_pred CceEEeccCCcccccccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 315 KLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 315 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
+|+.|+|++|.+..+ ..+..+++|+.|+|++|. +. .++.++.+++|+
T Consensus 132 ~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~-~~~~l~~l~~L~ 178 (605)
T 1m9s_A 132 QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-IS-DIVPLAGLTKLQ 178 (605)
T ss_dssp TCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CC-CCGGGTTCTTCC
T ss_pred ccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CC-CchhhccCCCCC
Confidence 999999999999888 578999999999999998 66 555577777775
No 88
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.85 E-value=5.3e-09 Score=99.35 Aligned_cols=118 Identities=16% Similarity=0.283 Sum_probs=71.2
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCC-CCCCC
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSL-PSNLS 312 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~l-p~~~~ 312 (365)
..++.+.+..+.+ ..+.+..|.++++|++|++++|...+ .++. ..+++|++|++++|.+..+ |..+.
T Consensus 30 ~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~-------~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGL-------VIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTC-------EECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccc-------eECcccccccccCCEEeCCCCccCccChhhcc
Confidence 3455555554444 33456667777777777775443211 3332 5667777777777777655 44553
Q ss_pred -CCCceEEeccCCcccc-cccc--cccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 313 -AKKLVLVEVPDSDIER-LWHC--VKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 313 -l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
+++|++|++++|.+.. +|.. ++.+++|++|++++|.... ..|. ++++++|+
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFH 157 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-CCCCGGGGGCTTCC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-cCcccccCCCCccc
Confidence 7777777777777654 3443 6677777777777776333 3353 56666654
No 89
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.85 E-value=4.9e-09 Score=95.94 Aligned_cols=96 Identities=9% Similarity=0.098 Sum_probs=51.2
Q ss_pred cCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCCCCCCceEEeccCCcccccccccccCc
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKHYS 337 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~ 337 (365)
+.++++|++|++++ + .++.+|. ..+++|++|++++|.+..+|....+++|++|++++|.....+..+..++
T Consensus 84 ~~~l~~L~~L~L~~-n-------~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~ 155 (347)
T 4fmz_A 84 LSNLVKLTNLYIGT-N-------KITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMT 155 (347)
T ss_dssp GTTCTTCCEEECCS-S-------CCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCT
T ss_pred hhcCCcCCEEEccC-C-------cccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCC
Confidence 55566666666632 2 2334444 5556666666666666655542246666666666663322223356666
Q ss_pred cCceecccccccccccCCCCCCCCCCC
Q 017858 338 KLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 338 ~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
+|++|++++|. +. .++.++.+++|+
T Consensus 156 ~L~~L~l~~~~-~~-~~~~~~~l~~L~ 180 (347)
T 4fmz_A 156 GLNYLTVTESK-VK-DVTPIANLTDLY 180 (347)
T ss_dssp TCCEEECCSSC-CC-CCGGGGGCTTCS
T ss_pred CCcEEEecCCC-cC-CchhhccCCCCC
Confidence 66666666665 44 344444444443
No 90
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=5.6e-09 Score=106.54 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=66.4
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CC--------CCcccEEEEeCCCCCCC
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PG--------FAEVKYLHWYGYPLKSL 307 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~--------l~~L~~L~l~~~~i~~l 307 (365)
.++.+.+..+.+. .++...+..+++|+.|++++|. ++.+|. .. +++|++|++++|.+..+
T Consensus 674 ~L~~L~Ls~N~L~--~lp~~~~~~l~~L~~L~Ls~N~--------L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l 743 (876)
T 4ecn_A 674 NASTVTLSYNEIQ--KFPTELFATGSPISTIILSNNL--------MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743 (876)
T ss_dssp CEEEEECCSSCCC--SCCHHHHHTTCCCSEEECCSCC--------CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC
T ss_pred CcCEEEccCCcCC--ccCHHHHccCCCCCEEECCCCc--------CCccChHHhccccccccccCCccEEECCCCCCccc
Confidence 3444444444332 3444445566777777774333 334444 11 12666777777766666
Q ss_pred CCCC---CCCCceEEeccCCcccccccccccCccCceecccc------cccccccCCC-CCCCCCCC
Q 017858 308 PSNL---SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAA------CNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 308 p~~~---~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~------~~~l~~~lp~-~~~l~~L~ 364 (365)
|..+ .+++|+.|+|++|.+..+|..+..+++|+.|++++ |.... .+|. ++.+++|+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~-~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR-QWPTGITTCPSLI 809 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC-CCCTTGGGCSSCC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccc-cChHHHhcCCCCC
Confidence 6655 36667777777776666666666666666666654 44333 5665 66666554
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.85 E-value=5.5e-09 Score=102.14 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=79.6
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCCCC
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNLSA 313 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~~l 313 (365)
+.++.+.+..+.+ ..+++..|.++++|++|++++|. ++.+++ ..+++|++|++++|.+..+|.. .+
T Consensus 52 ~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l 120 (562)
T 3a79_B 52 PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNR--------IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PM 120 (562)
T ss_dssp TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCC--------CCEECTTTTTTCTTCCEEECTTSCCCEECSC-CC
T ss_pred CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCC--------CCcCCHHHhCCCCCCCEEECCCCcCCccCcc-cc
Confidence 4566666555554 45566788999999999995444 545543 6788999999999999988877 88
Q ss_pred CCceEEeccCCcccccc--cccccCccCceecccccc
Q 017858 314 KKLVLVEVPDSDIERLW--HCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 314 ~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 348 (365)
++|++|++++|.+..+| ..++++++|++|++++|.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 99999999999887764 788999999999999887
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.84 E-value=8.9e-09 Score=102.97 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=55.9
Q ss_pred ccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCC---------CC-CCCCceEEecc
Q 017858 256 PSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPS---------NL-SAKKLVLVEVP 322 (365)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~---------~~-~l~~L~~L~l~ 322 (365)
+..|..+++|+.|++++| .++.+|. ..+++|++|++++|.+..++. .+ ++++|++|+++
T Consensus 473 p~~~~~l~~L~~L~Ls~N--------~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNN--------NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp SCTTTTCTTCCEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred CcccccCCCCCEEECCCC--------CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC
Confidence 445556666666666333 2334443 455666666666666554321 12 35666666666
Q ss_pred CCcccccccc-cccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 323 DSDIERLWHC-VKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 323 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
+|.+..+|.. +..+++|++|++++|. ++ .+|. |..+++|+
T Consensus 545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~-~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 545 SNGFDEIPVEVFKDLFELKIIDLGLNN-LN-TLPASVFNNQVSLK 587 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CC-CCCTTTTTTCTTCC
T ss_pred CCCCCCCCHHHcccccCcceeECCCCC-CC-cCCHhHhCCCCCCC
Confidence 6666666553 5666666666666665 55 4553 55555554
No 93
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.83 E-value=1.1e-08 Score=95.30 Aligned_cols=116 Identities=13% Similarity=0.192 Sum_probs=81.2
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCC-C-
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSN-L- 311 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~-~- 311 (365)
..++.+.+..+.. ..+++..|..+++|++|++++| .++.++. ..+++|++|++++|.+..+|+. +
T Consensus 45 ~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 45 NNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDL--------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp CCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCceEEEecCCch--hhCChhHhcccccCcEEECCCC--------cccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 3445554444433 3456666778888888888443 3445544 6678888888888888877655 4
Q ss_pred CCCCceEEeccCCccccccccc-ccCccCceecccccccccccC-CC-CCCCCCCC
Q 017858 312 SAKKLVLVEVPDSDIERLWHCV-KHYSKLNQIIHAACNMLTAKI-PN-PTLMPRMK 364 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~~l-p~-~~~l~~L~ 364 (365)
++++|++|++++|.+..+|..+ ..+++|++|++++|. +. .+ |. ++.+++|+
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~-~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LE-RIEDDTFQATTSLQ 168 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-BCCTTTTSSCTTCC
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cC-ccChhhccCCCCCC
Confidence 4888888888888888887764 788888888888887 44 44 44 77777775
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.83 E-value=8.6e-10 Score=99.89 Aligned_cols=116 Identities=12% Similarity=0.155 Sum_probs=91.4
Q ss_pred CceEEEEeeccccccccccCcccc-CCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC-C
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTF-TKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL-S 312 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~-~ 312 (365)
...++.+.+..+.+.. +.+..+ ..+++|++|++++| .++.++. ..+++|++|++++|.+..+|..+ .
T Consensus 143 l~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~L~~N--------~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 212 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYN--------FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS 212 (317)
T ss_dssp GSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEEECTTS--------CCCEEECCCCCTTCCEEECCSSCCCEECGGGGG
T ss_pred cCCCCEEECCCCCCCc--ccHHHHhhccCcCCEEECCCC--------cCcccccccccccCCEEECCCCcCCcchhhhcc
Confidence 4678888777766543 334444 47899999999544 4556776 67899999999999999999888 4
Q ss_pred CCCceEEeccCCcccccccccccCccCceecccccccccccCCC-CCCCC
Q 017858 313 AKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMP 361 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~ 361 (365)
+++|++|++++|.+..+|..+..+++|++|++++|....+.+|. ++.++
T Consensus 213 l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp GTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred cCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 99999999999999999999999999999999999855114454 44443
No 95
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.83 E-value=8.5e-09 Score=101.63 Aligned_cols=114 Identities=18% Similarity=0.301 Sum_probs=71.0
Q ss_pred EEEEeeccccccccccCccccCCCCCCceEEEecCccCCCcccccccc-CC--CCCCcccEEEEeCCCCCCC-CCCC-CC
Q 017858 239 IEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYL-QD--PGFAEVKYLHWYGYPLKSL-PSNL-SA 313 (365)
Q Consensus 239 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-p~--~~l~~L~~L~l~~~~i~~l-p~~~-~l 313 (365)
++.+.+..+.+ ..+++..|.++++|++|++++|. ++.+ |. ..+++|++|++++|.+..+ |..+ ++
T Consensus 35 l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~--------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 35 TECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQ--------IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp CCEEECTTCCC--SEECTTTSTTCTTCSEEECTTCC--------CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CcEEEccCCcc--CcCChhHhccCccceEEECCCCc--------cceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 45554444444 34556677777778888874443 3333 33 6667777777777777655 4444 37
Q ss_pred CCceEEeccCCccccc-ccccccCccCceecccccccccccC--CCCCCCCCCC
Q 017858 314 KKLVLVEVPDSDIERL-WHCVKHYSKLNQIIHAACNMLTAKI--PNPTLMPRMK 364 (365)
Q Consensus 314 ~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~l--p~~~~l~~L~ 364 (365)
++|++|++++|.+..+ |..++.+++|++|++++|. +. .+ |.+..+++|+
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~-~~~~~~~~~l~~L~ 156 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-IS-SIKLPKGFPTEKLK 156 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CC-CCCCCTTCCCTTCC
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCc-cc-ccCcccccCCcccC
Confidence 7777777777777666 5566777777777777776 44 33 4444455554
No 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.83 E-value=9.2e-09 Score=101.35 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=76.5
Q ss_pred cccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC-C-CCCceEEeccCCcc
Q 017858 252 IRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL-S-AKKLVLVEVPDSDI 326 (365)
Q Consensus 252 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~-~-l~~L~~L~l~~~~l 326 (365)
..+++..|..+++|++|++++|. ++.+++ ..+++|++|++++|.+..+|+.. + +++|++|+|++|.+
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQ--------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCHHHHccCCCCcEEECCCCC--------CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 44566677788888888885443 445543 67788888888888888777654 4 88888888888888
Q ss_pred ccccccc-ccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 327 ERLWHCV-KHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 327 ~~lp~~i-~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
..+|..+ +.+++|++|++++|. +.+..|. |+.+++|+
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQ 174 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCC
T ss_pred CCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCc
Confidence 8887764 788888888888887 4414444 77777775
No 97
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.83 E-value=5.6e-09 Score=99.92 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=37.9
Q ss_pred CCCCcccEEEEeCCCCCCCCC-CC-CCCCceEEeccCCccccccc-ccccCccCceecccccccccccCC-C-CCCCCCC
Q 017858 289 PGFAEVKYLHWYGYPLKSLPS-NL-SAKKLVLVEVPDSDIERLWH-CVKHYSKLNQIIHAACNMLTAKIP-N-PTLMPRM 363 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp~-~~-~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~lp-~-~~~l~~L 363 (365)
..+++|++|++++|.+..++. .+ ++++|+.|++++|.+..+|. .+..+++|+.|++++|. +. .++ . |..+++|
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~-~~~~~~~~~l~~L 202 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-IN-AIRDYSFKRLYRL 202 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CC-EECTTCSCSCTTC
T ss_pred cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-Cc-EeChhhcccCccc
Confidence 444555555555555554432 23 25555555555555555543 24555666666666555 33 233 2 5555555
Q ss_pred C
Q 017858 364 K 364 (365)
Q Consensus 364 ~ 364 (365)
+
T Consensus 203 ~ 203 (477)
T 2id5_A 203 K 203 (477)
T ss_dssp C
T ss_pred c
Confidence 4
No 98
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.83 E-value=5.2e-09 Score=101.21 Aligned_cols=117 Identities=18% Similarity=0.268 Sum_probs=71.1
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccc-cCC---CCCCcccEEEEeCCCCC-CCCCCC
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISY-LQD---PGFAEVKYLHWYGYPLK-SLPSNL 311 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-lp~---~~l~~L~~L~l~~~~i~-~lp~~~ 311 (365)
+.++.+.+..+.+......+..|..+++|+.|++++|. ++. +|. ..+++|++|++++|.+. .+|..+
T Consensus 348 ~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~--------l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS--------VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC--------CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc--------CCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 34444444444332211112345555566666664333 222 443 44456666666666653 233222
Q ss_pred CCCCceEEeccCCcccccccccccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 312 SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
. ++|++|++++|.+..+|..+..+++|++|++++|. ++ .+|. ++.+++|+
T Consensus 420 ~-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~-~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 420 P-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LK-SVPDGIFDRLTSLQ 471 (520)
T ss_dssp C-TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CC-CCCTTTTTTCTTCC
T ss_pred c-ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CC-ccCHHHhccCCccc
Confidence 2 67888888888888888888889999999999987 77 7875 77777775
No 99
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.83 E-value=4.2e-09 Score=95.91 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=46.9
Q ss_pred CCCCcccEEEEeCCCCCCCCCC-C-CCCCceEEeccCCcccccccccccCccCceecccccccccccCC
Q 017858 289 PGFAEVKYLHWYGYPLKSLPSN-L-SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIP 355 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp~~-~-~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp 355 (365)
..+++|++|++++|.+..++.. + .+++|++|++++|.+..+|..+..+++|++|++++|. ++ .+|
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~-~~~ 280 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-IT-KVG 280 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CC-BCC
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CC-ccC
Confidence 5566777777777777766653 3 3777778888777777777777777778888887776 55 555
No 100
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.83 E-value=4.2e-09 Score=101.91 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=84.1
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCcccccccc-CC--CCCCcccEEEEeCCCCCCCCCCCCC
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYL-QD--PGFAEVKYLHWYGYPLKSLPSNLSA 313 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-p~--~~l~~L~~L~l~~~~i~~lp~~~~l 313 (365)
+.++.+.+..+.+ ..+++..|.++++|++|++++|. ++.+ |. ..+++|++|++++|.+..+|.. .+
T Consensus 21 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNR--------IQYLDISVFKFNQELEYLDLSHNKLVKISCH-PT 89 (520)
T ss_dssp TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSC--------CCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CC
T ss_pred ccccEEECCCCcc--cccChhhccccccccEEecCCCc--------cCCcChHHhhcccCCCEEecCCCceeecCcc-cc
Confidence 4566665555544 34556788899999999995544 4445 33 7788999999999999888877 88
Q ss_pred CCceEEeccCCcccc--cccccccCccCceecccccccccccCCCCCCCCCC
Q 017858 314 KKLVLVEVPDSDIER--LWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRM 363 (365)
Q Consensus 314 ~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L 363 (365)
++|++|++++|.+.. +|..++.+++|++|++++|. +. . ..++.+++|
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~-~-~~~~~l~~L 138 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LE-K-SSVLPIAHL 138 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CC-G-GGGGGGTTS
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcc-cc-h-hhccccccc
Confidence 999999999998865 57888999999999999887 44 2 224444444
No 101
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.82 E-value=4.5e-09 Score=102.69 Aligned_cols=116 Identities=18% Similarity=0.326 Sum_probs=89.0
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCC-CC-C
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPS-NL-S 312 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~-~~-~ 312 (365)
.++.+.+..+.+ ..+.+..|.++++|++|++++| .++.++. ..+++|++|++++|.+..+|+ .+ +
T Consensus 29 ~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n--------~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 29 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRC--------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SCCEEECCSCCC--CEECTTTTTTCSSCCEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred cccEEEccCCcc--CccChhHhhCCCCceEEECCCC--------cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 456665555544 4456678899999999999544 3545654 678899999999999988774 45 4
Q ss_pred CCCceEEeccCCccccccc-ccccCccCceeccccccccc-ccCCC-CCCCCCCC
Q 017858 313 AKKLVLVEVPDSDIERLWH-CVKHYSKLNQIIHAACNMLT-AKIPN-PTLMPRMK 364 (365)
Q Consensus 313 l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~-~~lp~-~~~l~~L~ 364 (365)
+.+|++|++++|.+..+|. .++.+++|++|++++|. +. ..+|. |+++++|+
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCC
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCC
Confidence 9999999999999988865 68899999999999987 44 13677 88888876
No 102
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.82 E-value=9.5e-09 Score=100.47 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=48.9
Q ss_pred CCCcccEEEEeCCCCC-CCCCCCCCCCceEEeccCCcccccccccccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 290 GFAEVKYLHWYGYPLK-SLPSNLSAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 290 ~l~~L~~L~l~~~~i~-~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
.+++|++|++++|.+. .+|..+. ++|++|++++|.+..+|.++..+++|++|++++|. ++ .+|. ++.+++|+
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~-~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LK-SVPDGVFDRLTSLQ 500 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CC-CCCTTSTTTCTTCC
T ss_pred CcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CC-CCCHHHHhcCCCCC
Confidence 3444555555555443 2222211 57888888888888888888888888899998887 66 6775 77777775
No 103
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.82 E-value=6.1e-09 Score=105.73 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=43.1
Q ss_pred CCCCcccEEEEeCCCCC-CCCCCC-CCCCceEEeccCCccc-ccccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 289 PGFAEVKYLHWYGYPLK-SLPSNL-SAKKLVLVEVPDSDIE-RLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~-~lp~~~-~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
..+++|++|++++|.+. .+|..+ ++++|++|++++|.+. .+|..++.+++|++|++++|.... .+|. ++.+++|+
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG-NIPAELGDCRSLI 541 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGGCTTCC
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC-cCCHHHcCCCCCC
Confidence 44555666666666654 445555 3666666666666554 456666666666666666665333 5555 55555554
No 104
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.81 E-value=4.5e-08 Score=89.46 Aligned_cols=189 Identities=13% Similarity=0.171 Sum_probs=115.2
Q ss_pred EEEEEEeCCCChH--------h-HHHHHccCCCCCCCcEEEEEeCchhHHHhc-----------C-ccceEEeCCCCHHH
Q 017858 2 KVLIVFDDVTCFS--------Q-IESLIGSLDWLTPVSRIIITTRNKQVLRNW-----------G-VRKIYEMKALEYHH 60 (365)
Q Consensus 2 r~LlVlDdv~~~~--------~-~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~-----------~-~~~~~~l~~L~~~e 60 (365)
+.+||+||++... + +..+..... ..++.++|+|++...+.... + ....+++.+|+.+|
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e 207 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDT 207 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHH
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHH
Confidence 6899999997643 2 232322211 12478899999876542211 1 12479999999999
Q ss_pred HHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCchhHHHHhHhhcc-cCHHHHH-HHHHHHhhcCcccHHHHHHHHHhcC
Q 017858 61 AIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHK-REKEVWE-SATDKLQRILYPSILEVLKISYDSL 138 (365)
Q Consensus 61 ~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~-~~~~~w~-~~~~~l~~~~~~~~~~~l~~sy~~L 138 (365)
+.+++...........+ .+.+..|++.|||.|+++..++..+.. .+...+. ...+.. ...+.-.+..+
T Consensus 208 ~~~~l~~~~~~~~~~~~--~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~l 277 (350)
T 2qen_A 208 SVEFLKRGFREVNLDVP--ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA--------KGLIMGELEEL 277 (350)
T ss_dssp HHHHHHHHHHTTTCCCC--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH--------HHHHHHHHHHH
Confidence 99999876422221111 356789999999999999988876533 2322221 111111 11111112222
Q ss_pred ---ChhhhhhhhhhccccCCcCHHHHHHHHHHc--CCCc---ccchhHHhhcCceeEccCCcEEe-cHHHHHHHH
Q 017858 139 ---DDKEKNIFLDVACFFQGEDVDLVMKFFNAS--GFYP---EIGMSVLVDKSLIAIDSHKKITM-HDLLQELGR 204 (365)
Q Consensus 139 ---~~~~~~~~~~ls~fp~~~~~~~l~~~w~~~--~~~~---~~~l~~L~~~sLl~~~~~~~~~~-H~lv~~~a~ 204 (365)
++..+..+..+|. ...+...+....... +... ..+++.|.+.+++... .+.|++ |+++++|.+
T Consensus 278 ~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 278 RRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 7888889888887 334555555544222 2221 3568999999999876 466765 788888764
No 105
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.81 E-value=7.2e-09 Score=100.88 Aligned_cols=119 Identities=8% Similarity=0.137 Sum_probs=71.5
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCC--
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNL-- 311 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~-- 311 (365)
.+.++.+.+..+........+..+..+++|++|++++| .++.+|. ..+++|++|++++|.+..+|..+
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N--------~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~ 431 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN--------TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC--------CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCT
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC--------CCccCChhhcccccccEEECCCCCcccccchhcC
Confidence 34455555554444322111234556666666666433 2334554 44555666666665555444321
Q ss_pred -----------------CCCCceEEeccCCcccccccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 312 -----------------SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 312 -----------------~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
++++|++|++++|++..+|. ...+++|++|++++|. +++..|. ++.+++|+
T Consensus 432 ~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 432 TLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp TCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCC
T ss_pred CceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCc-cCCcCHHHHhcCcccC
Confidence 36788888888888888886 4678888999998887 5514444 77777765
No 106
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.80 E-value=6.1e-09 Score=105.72 Aligned_cols=94 Identities=17% Similarity=0.332 Sum_probs=81.7
Q ss_pred CccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCC-CCCCCCC-CCCceEEeccCCccc-cc
Q 017858 255 NPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLK-SLPSNLS-AKKLVLVEVPDSDIE-RL 329 (365)
Q Consensus 255 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~-~lp~~~~-l~~L~~L~l~~~~l~-~l 329 (365)
.+..|..++.|+.|++++|.+.| .+|. +.++.|++|++++|.+. .+|..++ +++|++|+|++|++. .+
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g-------~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSG-------YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBS-------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred CchhhhccccccEEECcCCcccc-------cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 35567889999999998777554 5676 88999999999999987 7898885 999999999999985 78
Q ss_pred ccccccCccCceecccccccccccCCC
Q 017858 330 WHCVKHYSKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 330 p~~i~~l~~L~~L~l~~~~~l~~~lp~ 356 (365)
|..+..+++|++|++++|...+ .+|.
T Consensus 697 p~~l~~l~~L~~L~ls~N~l~g-~iP~ 722 (768)
T 3rgz_A 697 PQAMSALTMLTEIDLSNNNLSG-PIPE 722 (768)
T ss_dssp CGGGGGCCCCSEEECCSSEEEE-ECCS
T ss_pred ChHHhCCCCCCEEECcCCcccc-cCCC
Confidence 9999999999999999999444 9996
No 107
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.80 E-value=1e-08 Score=101.85 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=74.9
Q ss_pred CCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCCC--CC-------CceEEeccCCcccc
Q 017858 261 KMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNLS--AK-------KLVLVEVPDSDIER 328 (365)
Q Consensus 261 ~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~~--l~-------~L~~L~l~~~~l~~ 328 (365)
.+.+|+.|++++| .++.+|. ..+++|++|++++|.+..+|..+. +. +|++|++++|.+..
T Consensus 431 ~~~~L~~L~Ls~N--------~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 502 (636)
T 4eco_A 431 KGINVSSINLSNN--------QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502 (636)
T ss_dssp CCCCEEEEECCSS--------CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB
T ss_pred cCCCCCEEECcCC--------ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc
Confidence 5556777777433 4556776 457889999999999988887762 33 89999999999999
Q ss_pred cccccc--cCccCceecccccccccccCCC-CCCCCCCC
Q 017858 329 LWHCVK--HYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 329 lp~~i~--~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
+|..+. .+++|++|++++|. ++ .+|. ++.+++|+
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~-l~-~ip~~~~~l~~L~ 539 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNS-FS-KFPTQPLNSSTLK 539 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSC-CS-SCCCGGGGCSSCC
T ss_pred cChhhhhccCCCcCEEECCCCC-CC-CcChhhhcCCCCC
Confidence 998887 89999999999998 77 6887 88888776
No 108
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.80 E-value=1.7e-08 Score=91.77 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=44.0
Q ss_pred cCccccCCCCCCceEEEecCccCCCcccccccc-CC--CCCCcccEEEEeCCCCCCCCCCCCCCCceEEeccCCcccccc
Q 017858 254 LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYL-QD--PGFAEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLW 330 (365)
Q Consensus 254 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-p~--~~l~~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~lp 330 (365)
+++..|.++++|++|++++|. ++.+ |. ..+++|++|++++|.+..+|..+. ++|++|++++|.+..+|
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~ 137 (330)
T 1xku_A 67 IKDGDFKNLKNLHTLILINNK--------ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVR 137 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSC--------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBC
T ss_pred eChhhhccCCCCCEEECCCCc--------CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCcccccC
Confidence 444456666666666664332 3333 22 455666666666666665554432 45555555555554443
Q ss_pred c-ccccCccCceecccccc
Q 017858 331 H-CVKHYSKLNQIIHAACN 348 (365)
Q Consensus 331 ~-~i~~l~~L~~L~l~~~~ 348 (365)
. .+..+++|++|++++|.
T Consensus 138 ~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 138 KSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp HHHHTTCTTCCEEECCSSC
T ss_pred HhHhcCCccccEEECCCCc
Confidence 2 23444555555554444
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.79 E-value=4e-09 Score=95.11 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=52.1
Q ss_pred CCCcccEEEEeCCCCCCC-CCCCC-C---CCceEEeccCCcccccccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 290 GFAEVKYLHWYGYPLKSL-PSNLS-A---KKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 290 ~l~~L~~L~l~~~~i~~l-p~~~~-l---~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
.+++|++|++++|.+..+ |..+. + ++|++|++++|.+..+|..+. ++|++|++++|. ++ .+|.+..+++|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~-~~~~~~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LN-RAPQPDELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CC-SCCCTTSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CC-CCchhhhCCCcc
Confidence 347788888888887765 66552 3 688888888888888887774 788888888887 66 566666666654
No 110
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.78 E-value=7.4e-09 Score=98.85 Aligned_cols=94 Identities=10% Similarity=0.199 Sum_probs=60.3
Q ss_pred cCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCcccccccccccC
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKHY 336 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~lp~~i~~l 336 (365)
+..+++|++|++++|. ++.+|+ ..+++|++|++++|.+..+|. + ++++|++|++++|.+..+|. +..+
T Consensus 64 ~~~l~~L~~L~Ls~n~--------l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l 133 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQ--------LTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNL 133 (466)
T ss_dssp GGGCTTCCEEECCSSC--------CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred hhhhcCCCEEECCCCc--------cCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCC
Confidence 5566777777774333 444555 666777777777777766665 4 47777777777777766654 6677
Q ss_pred ccCceecccccccccccCCCCCCCCCCC
Q 017858 337 SKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 337 ~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
++|++|++++|. +. .+|.++.+++|+
T Consensus 134 ~~L~~L~l~~n~-l~-~~~~~~~l~~L~ 159 (466)
T 1o6v_A 134 TNLNRLELSSNT-IS-DISALSGLTSLQ 159 (466)
T ss_dssp TTCSEEEEEEEE-EC-CCGGGTTCTTCS
T ss_pred CCCCEEECCCCc-cC-CChhhccCCccc
Confidence 777777777766 55 455555555543
No 111
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.77 E-value=3.7e-09 Score=95.47 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=48.3
Q ss_pred CCCcccEEEEeCCCCCCCC--CCC-CCCCceEEeccCCcccccccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 290 GFAEVKYLHWYGYPLKSLP--SNL-SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 290 ~l~~L~~L~l~~~~i~~lp--~~~-~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
.+++|++|++++|.+...+ ..+ .+++|++|++++|.+..+|..+. ++|++|++++|. ++ .+|.++.+++|+
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l~-~~p~~~~l~~L~ 299 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-LD-RNPSPDELPQVG 299 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-CC-SCCCTTTSCEEE
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-CC-CChhHhhCCCCC
Confidence 5567777777777776644 222 36777777777777777777666 777777777776 55 566666666553
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.77 E-value=2.1e-09 Score=103.31 Aligned_cols=117 Identities=12% Similarity=0.149 Sum_probs=92.7
Q ss_pred CCceEEEEeeccccccccccCccccC-CCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCC-
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFT-KMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNL- 311 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~- 311 (365)
..+.++.+.+..+.+.. +.+..+. .+++|+.|++++|. ++.+|. ..+++|++|++++|.+..+|+.+
T Consensus 142 ~l~~L~~L~Ls~N~l~~--~~~~~l~~~l~~L~~L~Ls~N~--------l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 211 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYNF--------IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211 (487)
T ss_dssp GGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEEECTTSC--------CCEEECCCCCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCCCCEEECCCCCCCC--cChHHHhhhCCcccEEecCCCc--------cccccccccCCCCCEEECCCCCCCCCCHhHc
Confidence 35678888777766543 3345554 78999999996554 556666 77899999999999999999888
Q ss_pred CCCCceEEeccCCcccccccccccCccCceecccccccccccCCC-CCCCC
Q 017858 312 SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMP 361 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~ 361 (365)
.+++|++|++++|.+..+|..+..+++|+.|++++|....+.+|. ++.++
T Consensus 212 ~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred CCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 499999999999999999999999999999999999855224554 55443
No 113
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.75 E-value=2.1e-08 Score=91.89 Aligned_cols=190 Identities=16% Similarity=0.137 Sum_probs=114.7
Q ss_pred EEEEEEeCCCChH-----hHHHHHccCCCCCCCcEEEEEeCchhHHHhc-----------Cc-cceEEeCCCCHHHHHHH
Q 017858 2 KVLIVFDDVTCFS-----QIESLIGSLDWLTPVSRIIITTRNKQVLRNW-----------GV-RKIYEMKALEYHHAIRL 64 (365)
Q Consensus 2 r~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~-----------~~-~~~~~l~~L~~~e~~~L 64 (365)
+.+||+||++..+ ++..+...+.+..++.++|+|+|........ +. ...+++.+|+.+|+.++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 6899999997532 2222222221112467899999986542211 11 24789999999999999
Q ss_pred HHHhhhcCCCCCccHHHHHHHHHHHcCCCchhHHHHhHhhcc-cCHHHHHH-HHHHHhhcCcccHHHHHH-HHHh--cCC
Q 017858 65 FSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFLHK-REKEVWES-ATDKLQRILYPSILEVLK-ISYD--SLD 139 (365)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~-~~~~~w~~-~~~~l~~~~~~~~~~~l~-~sy~--~L~ 139 (365)
+...+.......+.. ..|++.|||.|+++..++..+.. .+...|.. ..+... ..+...+. +.++ .++
T Consensus 218 l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~ 289 (357)
T 2fna_A 218 LRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIAR 289 (357)
T ss_dssp HHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhcccccc
Confidence 987653212222221 78999999999999998877643 23333321 111111 11111222 1111 678
Q ss_pred hhhhhhhhhhccccCCcCHHHHHHHHH-HcC--CC---cccchhHHhhcCceeEccCCcEE-ecHHHHHHH
Q 017858 140 DKEKNIFLDVACFFQGEDVDLVMKFFN-ASG--FY---PEIGMSVLVDKSLIAIDSHKKIT-MHDLLQELG 203 (365)
Q Consensus 140 ~~~~~~~~~ls~fp~~~~~~~l~~~w~-~~~--~~---~~~~l~~L~~~sLl~~~~~~~~~-~H~lv~~~a 203 (365)
+..+..+..+|. .. +...+..... ..| .. ...+++.|.+.++|... .+.|+ -|++++++.
T Consensus 290 ~~~~~~l~~la~--g~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 290 KRYLNIMRTLSK--CG-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHTT--CB-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred HHHHHHHHHHHc--CC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 888999999887 22 5555543321 123 22 24568999999999877 46676 578988874
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.72 E-value=2.4e-08 Score=91.30 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=80.2
Q ss_pred CCCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCC-CCCCCCCC
Q 017858 234 TGTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYP-LKSLPSNL 311 (365)
Q Consensus 234 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~-i~~lp~~~ 311 (365)
.....++.+.+..+.+... +.|.++++|++|+++ ++ .++.++. ..+++|++|++++|. +..++. +
T Consensus 85 ~~l~~L~~L~L~~n~i~~~----~~~~~l~~L~~L~l~-~n-------~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~ 151 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNKITDI----SALQNLTNLRELYLN-ED-------NISDISPLANLTKMYSLNLGANHNLSDLSP-L 151 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC----GGGTTCTTCSEEECT-TS-------CCCCCGGGTTCTTCCEEECTTCTTCCCCGG-G
T ss_pred hcCCcCCEEEccCCcccCc----hHHcCCCcCCEEECc-CC-------cccCchhhccCCceeEEECCCCCCcccccc-h
Confidence 3456677776666654332 357788888888884 44 3545666 777888888888886 434443 5
Q ss_pred -CCCCceEEeccCCcccccccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 312 -SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 312 -~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
.+++|++|++++|.+..++. +..+++|++|++++|. +. .+|.+..+++|+
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~-~~~~~~~l~~L~ 202 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IE-DISPLASLTSLH 202 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CC-CCGGGGGCTTCC
T ss_pred hhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cc-ccccccCCCccc
Confidence 48888888888888877765 7788888888888887 56 566555565554
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.72 E-value=1.4e-10 Score=97.64 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=44.7
Q ss_pred ccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCccccccc--c
Q 017858 258 TFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWH--C 332 (365)
Q Consensus 258 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~lp~--~ 332 (365)
.+.++++|+.|++++| .++.+|. ..+++|++|++++|.+..+| .+ .+++|++|++++|.+..+|. .
T Consensus 65 ~~~~l~~L~~L~l~~n--------~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~ 135 (198)
T 1ds9_A 65 SLSGMENLRILSLGRN--------LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDK 135 (198)
T ss_dssp CHHHHTTCCEEEEEEE--------EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHH
T ss_pred ccccCCCCCEEECCCC--------CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHH
Confidence 4455555666666332 2334554 33455666666666655555 23 35566666666666555543 4
Q ss_pred cccCccCceecccccc
Q 017858 333 VKHYSKLNQIIHAACN 348 (365)
Q Consensus 333 i~~l~~L~~L~l~~~~ 348 (365)
+..+++|++|++++|.
T Consensus 136 l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 136 LAALDKLEDLLLAGNP 151 (198)
T ss_dssp HTTTTTCSEEEECSCH
T ss_pred HhcCCCCCEEEecCCc
Confidence 5556666666666665
No 116
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=2.8e-08 Score=101.40 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=87.1
Q ss_pred CceEEEEeeccccccccccCccccCCC-------CCCceEEEecCccCCCccccccccCC--C--CCCcccEEEEeCCCC
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKM-------PKLRFLKFYRSSVNGKNKCKISYLQD--P--GFAEVKYLHWYGYPL 304 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~~l~~lp~--~--~l~~L~~L~l~~~~i 304 (365)
.+.++.+.+..+.+. .++...+... ++|+.|++++| .++.+|. . .+++|+.|++++|.+
T Consensus 696 l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N--------~L~~lp~~l~~~~l~~L~~L~Ls~N~L 765 (876)
T 4ecn_A 696 GSPISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFN--------KLTSLSDDFRATTLPYLSNMDVSYNCF 765 (876)
T ss_dssp TCCCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSS--------CCCCCCGGGSTTTCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcCC--ccChHHhccccccccccCCccEEECCCC--------CCccchHHhhhccCCCcCEEEeCCCCC
Confidence 455677776666554 4555554433 38999999544 4557777 5 789999999999999
Q ss_pred CCCCCCC-CCCCceEEeccC------Ccc-cccccccccCccCceecccccccccccCCC-CC
Q 017858 305 KSLPSNL-SAKKLVLVEVPD------SDI-ERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PT 358 (365)
Q Consensus 305 ~~lp~~~-~l~~L~~L~l~~------~~l-~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~ 358 (365)
..+|..+ ++++|+.|+|++ |.+ ..+|..+..+++|++|++++|. ++ .+|. +.
T Consensus 766 ~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~-~Ip~~l~ 826 (876)
T 4ecn_A 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IR-KVDEKLT 826 (876)
T ss_dssp SSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CC-BCCSCCC
T ss_pred CccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CC-ccCHhhc
Confidence 9999888 499999999977 544 6789999999999999999998 57 8997 44
No 117
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=2.4e-08 Score=91.36 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=71.2
Q ss_pred cccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcc
Q 017858 252 IRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDI 326 (365)
Q Consensus 252 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l 326 (365)
..+|. +..+.+|+.|+|++++ .++.+|+ ..+++|++|+|++|.+..+|+.. ++.+|++|+|++|.+
T Consensus 22 ~~ip~--l~~~~~L~~L~l~~~n-------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 22 DSLHH--LPGAENLTELYIENQQ-------HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp TTTTT--SCSCSCCSEEECCSCS-------SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred CccCC--CCCCCCeeEEEccCCC-------CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 34444 8888999999996425 4666775 78899999999999999887654 499999999999999
Q ss_pred cccccccccCccCceecccccc
Q 017858 327 ERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 327 ~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
..+|..+....+|+.|++.+|.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSC
T ss_pred ceeCHHHcccCCceEEEeeCCC
Confidence 9998876544459999999886
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.68 E-value=3e-08 Score=96.67 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=32.4
Q ss_pred CcccEEEEeCCCCCCCCCCCCCCCc-------eEEeccCCcccccccccccCccCceecccccc
Q 017858 292 AEVKYLHWYGYPLKSLPSNLSAKKL-------VLVEVPDSDIERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 292 ~~L~~L~l~~~~i~~lp~~~~l~~L-------~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
++|++|++++|.++.+|. +.- +| ++|+|++|.+..+|.++..+++|++|++++|.
T Consensus 180 ~~L~~L~Ls~N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPA-VPV-RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp TTCCEEECCSSCCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CCCCEEECcCCCCCchhh-HHH-hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 556666666666666655 311 34 66666666666666666666666666666665
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.68 E-value=5.4e-08 Score=92.62 Aligned_cols=91 Identities=15% Similarity=0.255 Sum_probs=47.2
Q ss_pred cCCCCCCceEEEecCccCCCccccccccCCCCCCcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCcccccccccccCc
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWHCVKHYS 337 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~lp~~i~~l~ 337 (365)
+..+++|++|++++|. ++.+|-..+++|++|++++|.+..+| + .+++|++|++++|.+..+| ++.++
T Consensus 81 ~~~l~~L~~L~Ls~N~--------l~~~~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~ 148 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNK--------LTNLDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNT 148 (457)
T ss_dssp CTTCTTCSEEECCSSC--------CSCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCT
T ss_pred cccCCCCCEEECcCCC--------CceeecCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCC
Confidence 4455555555553332 22221144555666666666655554 4 3566666666666655553 55566
Q ss_pred cCceecccccccccccCCCCCCCCCC
Q 017858 338 KLNQIIHAACNMLTAKIPNPTLMPRM 363 (365)
Q Consensus 338 ~L~~L~l~~~~~l~~~lp~~~~l~~L 363 (365)
+|++|++++|..++ .+ .++.+++|
T Consensus 149 ~L~~L~l~~n~~~~-~~-~~~~l~~L 172 (457)
T 3bz5_A 149 QLTELDCHLNKKIT-KL-DVTPQTQL 172 (457)
T ss_dssp TCCEEECTTCSCCC-CC-CCTTCTTC
T ss_pred cCCEEECCCCCccc-cc-ccccCCcC
Confidence 66666666664344 44 24444444
No 120
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.67 E-value=7.7e-09 Score=93.24 Aligned_cols=113 Identities=11% Similarity=0.112 Sum_probs=78.0
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC----CCCCcccEEEEeCCCCCCCCCC
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD----PGFAEVKYLHWYGYPLKSLPSN 310 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~----~~l~~L~~L~l~~~~i~~lp~~ 310 (365)
..+.++.+.+..+.+ ..+++..|..+++|++|++++|.+.+ ...++. ..+++|++|++++|.++.+|..
T Consensus 143 ~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 215 (310)
T 4glp_A 143 LKPGLKVLSIAQAHS--PAFSCEQVRAFPALTSLDLSDNPGLG-----ERGLMAALCPHKFPAIQNLALRNTGMETPTGV 215 (310)
T ss_dssp BCSCCCEEEEECCSS--CCCCTTSCCCCTTCCEEECCSCTTCH-----HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH
T ss_pred hccCCCEEEeeCCCc--chhhHHHhccCCCCCEEECCCCCCcc-----chhhhHHHhhhcCCCCCEEECCCCCCCchHHH
Confidence 345666666665554 44556777888888888886554221 001222 4677888888888888766653
Q ss_pred ----C-CCCCceEEeccCCccccc-ccccccC---ccCceecccccccccccCCC
Q 017858 311 ----L-SAKKLVLVEVPDSDIERL-WHCVKHY---SKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 311 ----~-~l~~L~~L~l~~~~l~~l-p~~i~~l---~~L~~L~l~~~~~l~~~lp~ 356 (365)
+ ++++|++|++++|.+..+ |..+..+ ++|++|++++|. ++ .+|.
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~-~lp~ 268 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LE-QVPK 268 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CC-SCCS
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CC-chhh
Confidence 2 378888888888888776 7777666 588888888887 67 7776
No 121
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.67 E-value=3.1e-08 Score=97.61 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=71.4
Q ss_pred CCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCcccccccc-CC--CCCCcccEEEEeCCCCCCC-CCC
Q 017858 235 GTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYL-QD--PGFAEVKYLHWYGYPLKSL-PSN 310 (365)
Q Consensus 235 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-p~--~~l~~L~~L~l~~~~i~~l-p~~ 310 (365)
+...++.+.+..+.+ ..+.+..|.++++|++|++++|. ++.+ |. ..+++|++|++++|.+..+ |..
T Consensus 55 ~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~ 124 (606)
T 3t6q_A 55 RLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANP--------LIFMAETALSGPKALKHLFFIQTGISSIDFIP 124 (606)
T ss_dssp TCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCC--------CSEECTTTTSSCTTCCEEECTTSCCSCGGGSC
T ss_pred cCccceEEECCCCcc--ceeChhhccCccccCeeeCCCCc--------ccccChhhhcccccccEeeccccCcccCCcch
Confidence 344556665554443 34556677777888888885443 3333 32 5667777777777777766 344
Q ss_pred C-CCCCceEEeccCCcccccc-cccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 311 L-SAKKLVLVEVPDSDIERLW-HCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 311 ~-~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
+ ++++|++|++++|.+..++ ..+..+++|++|++++|. +.+..|. ++.+++|+
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQAT 180 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCC
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccc
Confidence 4 3777777777777776652 233337777777777776 4412333 55555553
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.65 E-value=2.6e-08 Score=94.81 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=85.7
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCCCCCCcccEEEEeCCCCCCCCCCC-CCCC
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGYPLKSLPSNL-SAKK 315 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~~i~~lp~~~-~l~~ 315 (365)
+.++.+.+..+.... ++ .+..+++|++|++++|. ++.+|-..+++|++|++++|.+..+| + ++++
T Consensus 42 ~~L~~L~Ls~n~l~~--~~--~l~~l~~L~~L~Ls~n~--------l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD--MT--GIEKLTGLTKLICTSNN--------ITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp TTCCEEECCSSCCCC--CT--TGGGCTTCSEEECCSSC--------CSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred CCCCEEEccCCCccc--Ch--hhcccCCCCEEEccCCc--------CCeEccccCCCCCEEECcCCCCceee--cCCCCc
Confidence 456667666665543 32 58899999999996554 43443377899999999999999886 6 5999
Q ss_pred ceEEeccCCcccccccccccCccCceecccccccccccCCCCCCCCCCC
Q 017858 316 LVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRMK 364 (365)
Q Consensus 316 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~ 364 (365)
|++|++++|.+..+| ++.+++|++|++++|. ++ .+| ++.+++|+
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~-~l~-l~~l~~L~ 151 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LT-EID-VSHNTQLT 151 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CS-CCC-CTTCTTCC
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cc-eec-cccCCcCC
Confidence 999999999998886 8999999999999998 66 565 66666664
No 123
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.64 E-value=2.6e-08 Score=89.87 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=84.0
Q ss_pred CCCceEEEEeecccccccc-ccCccccCCCCCCceEEEecCccCCCccccccccC---C-CCCCcccEEEEeCCCCCCCC
Q 017858 234 TGTEKIEGICLDMSKIKEI-RLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQ---D-PGFAEVKYLHWYGYPLKSLP 308 (365)
Q Consensus 234 ~~~~~~~~l~l~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp---~-~~l~~L~~L~l~~~~i~~lp 308 (365)
.....++.+.+..+.+... .++...+..+++|+.|++++|. ++..+ . ..+++|++|++++|.++.+|
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS--------LRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC--------CCSSCCCSCCCCCTTCCEEECTTSCCSSCC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc--------CCcccchhhhhhcCCCCEEECCCCccChhh
Confidence 4567788888777766432 2333456688999999996655 33333 2 56799999999999999999
Q ss_pred CCCCCCCceEEeccCCcccccccccccCccCceecccccc
Q 017858 309 SNLSAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 309 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
..+. ++|++|++++|.+..+|. +..+++|++|++++|.
T Consensus 270 ~~~~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 270 KGLP-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SSCC-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhcc-CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 8877 899999999999999987 9999999999999997
No 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.61 E-value=7.3e-08 Score=91.91 Aligned_cols=58 Identities=12% Similarity=0.179 Sum_probs=25.7
Q ss_pred CCCcccEEEEeCCCCCCCCCCCCCCCceEEeccCCcccccccccccCccCceecccccc
Q 017858 290 GFAEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 290 ~l~~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 348 (365)
.+++|++|++++|.+..+++...+++|++|++++|.+..+| .+..+++|++|++++|.
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCc
Confidence 33444444444444443332112444444444444444442 34445555555555554
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.60 E-value=2.3e-10 Score=96.28 Aligned_cols=97 Identities=12% Similarity=0.189 Sum_probs=79.9
Q ss_pred cccCCCCCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCCC-CCCceEEeccCCcccccccccc
Q 017858 257 STFTKMPKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNLS-AKKLVLVEVPDSDIERLWHCVK 334 (365)
Q Consensus 257 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~~-l~~L~~L~l~~~~l~~lp~~i~ 334 (365)
..|..+++|++|++++| .++.+|. ..+++|++|++++|.+..+|..+. +++|++|++++|.+..+| .+.
T Consensus 42 ~~~~~l~~L~~L~ls~n--------~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTN--------NIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp HHHHHTTTCSEEECSEE--------EESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HHHhcCCCCCEEECCCC--------CCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 37888999999999544 4556777 778899999999999999987664 789999999999998888 688
Q ss_pred cCccCceecccccccccccCCC---CCCCCCCC
Q 017858 335 HYSKLNQIIHAACNMLTAKIPN---PTLMPRMK 364 (365)
Q Consensus 335 ~l~~L~~L~l~~~~~l~~~lp~---~~~l~~L~ 364 (365)
.+++|++|++++|. +. .+|. ++.+++|+
T Consensus 113 ~l~~L~~L~l~~N~-i~-~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-IT-NWGEIDKLAALDKLE 143 (198)
T ss_dssp HHHHSSEEEESEEE-CC-CHHHHHHHTTTTTCS
T ss_pred cCCCCCEEECCCCc-CC-chhHHHHHhcCCCCC
Confidence 99999999999998 55 5552 77777765
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.57 E-value=1.2e-07 Score=93.39 Aligned_cols=66 Identities=23% Similarity=0.187 Sum_probs=41.7
Q ss_pred CcccEEEEeCCCCCCCCCCCCCCCceEEeccCCcccccccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 292 AEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 292 ~~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
++|++|++++|.++.+| ..+++|++|++++|.+..+|. .+++|++|++++|. ++ .+|. ++++++|+
T Consensus 221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LT-RLPESLIHLSSET 287 (622)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CC-SCCGGGGGSCTTC
T ss_pred CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC-CC-cCCHHHhhccccC
Confidence 55666666666666665 224566666776666666665 45667777777765 55 6665 66666654
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.57 E-value=1.7e-07 Score=92.44 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=33.0
Q ss_pred CCCCceEEEecCccCCCccccccccCCCCCCcccEEEEeCCCCCCCCCCCCCCCceEEeccCCcccccccccccCccCce
Q 017858 262 MPKLRFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKHYSKLNQ 341 (365)
Q Consensus 262 l~~L~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 341 (365)
+++|++|++++|. ++.+|. .+++|++|++++|.+..+|. .+.+|++|++++|.+..+|.. +++|++
T Consensus 80 l~~L~~L~Ls~N~--------l~~lp~-~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~ 145 (622)
T 3g06_A 80 PPELRTLEVSGNQ--------LTSLPV-LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQE 145 (622)
T ss_dssp CTTCCEEEECSCC--------CSCCCC-CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCE
T ss_pred CCCCCEEEcCCCc--------CCcCCC-CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCE
Confidence 4556666663322 333443 44555555555555555544 233444444444444444432 134444
Q ss_pred eccccc
Q 017858 342 IIHAAC 347 (365)
Q Consensus 342 L~l~~~ 347 (365)
|++++|
T Consensus 146 L~Ls~N 151 (622)
T 3g06_A 146 LSVSDN 151 (622)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 444444
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=9.7e-08 Score=87.33 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=65.3
Q ss_pred cccccCC-CCCCcccEEEEeC-CCCCCCCCC-C-CCCCceEEeccCCccccccc-ccccCccCceecccccccccccCCC
Q 017858 282 KISYLQD-PGFAEVKYLHWYG-YPLKSLPSN-L-SAKKLVLVEVPDSDIERLWH-CVKHYSKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 282 ~l~~lp~-~~l~~L~~L~l~~-~~i~~lp~~-~-~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~lp~ 356 (365)
.++.+|. ..+++|++|+|++ |.+..+|+. + ++.+|++|+|++|.+..+|. .+..|++|++|+|++|. +. .+|.
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~-~~~~ 97 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LE-SLSW 97 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CS-CCCS
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cc-eeCH
Confidence 4667888 7778899999997 999999854 5 49999999999999988855 67999999999999998 77 6775
Q ss_pred --CCCCC
Q 017858 357 --PTLMP 361 (365)
Q Consensus 357 --~~~l~ 361 (365)
|..++
T Consensus 98 ~~~~~~~ 104 (347)
T 2ifg_A 98 KTVQGLS 104 (347)
T ss_dssp TTTCSCC
T ss_pred HHcccCC
Confidence 55443
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.53 E-value=3.2e-07 Score=87.21 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=52.1
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCC------------ccccccccCC-CCCCcccEEEEeCCCC
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGK------------NKCKISYLQD-PGFAEVKYLHWYGYPL 304 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~l~~lp~-~~l~~L~~L~l~~~~i 304 (365)
.++.+.+..+.... ++ .|.++++|++|++++|.+.+. ....++.+|. ..+++|++|++++|.+
T Consensus 132 ~L~~L~L~~n~l~~--lp--~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK--LP--ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TCCEEECCSSCCSS--CC--CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred CCCEEECcCCCCCC--Cc--ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence 45555555554432 33 367777777777754432210 0002222333 3344444444444444
Q ss_pred CCCCCCCCCCCceEEeccCCcccccccccccCccCceecccccccccccCCC
Q 017858 305 KSLPSNLSAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 305 ~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~ 356 (365)
..+|.. ..+|++|++++|.+..+| .++.+++|++|++++|. ++ .+|.
T Consensus 208 ~~l~~~--~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~-~l~~ 254 (454)
T 1jl5_A 208 KKLPDL--PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LK-TLPD 254 (454)
T ss_dssp SSCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CS-SCCS
T ss_pred CcCCCC--cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CC-cccc
Confidence 443322 134555555555555555 25555666666666555 44 4544
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.52 E-value=1.4e-07 Score=86.41 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=31.4
Q ss_pred CcccEEEEeC-CCCCCCCCCC--CCCCceEEeccCCcccccccccccCccCceecccccccccccCCCCCCCCCC
Q 017858 292 AEVKYLHWYG-YPLKSLPSNL--SAKKLVLVEVPDSDIERLWHCVKHYSKLNQIIHAACNMLTAKIPNPTLMPRM 363 (365)
Q Consensus 292 ~~L~~L~l~~-~~i~~lp~~~--~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L 363 (365)
.+|+.|++.+ |.++.+|..+ ++++|++|++++|.+..+|... +.+|+.|.+.++..++ .+|.+.++++|
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~-~lP~l~~l~~L 248 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLK-KLPTLEKLVAL 248 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCC-CCCCTTTCCSC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcC-cCCCchhCcCh
Confidence 4445555543 3355555433 2555555555555555554421 2333333333333344 55554444444
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.49 E-value=3.3e-07 Score=89.32 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=73.6
Q ss_pred eEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCCCCCCcccEEEEeCCCCCCCCCCCCCCCce
Q 017858 238 KIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGYPLKSLPSNLSAKKLV 317 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~~i~~lp~~~~l~~L~ 317 (365)
.++.+.+..+.+.. ++. .+++|+.|++++| .++.+|. .+++|++|++++|.++.+|. +. .+|+
T Consensus 121 ~L~~L~Ls~N~l~~--lp~----~l~~L~~L~Ls~N--------~l~~lp~-~l~~L~~L~Ls~N~L~~lp~-l~-~~L~ 183 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM--LPE----LPALLEYINADNN--------QLTMLPE-LPTSLEVLSVRNNQLTFLPE-LP-ESLE 183 (571)
T ss_dssp TCCEEECCSSCCSC--CCC----CCTTCCEEECCSS--------CCSCCCC-CCTTCCEEECCSSCCSCCCC-CC-TTCC
T ss_pred CCCEEECCCCcCCC--CCC----cCccccEEeCCCC--------ccCcCCC-cCCCcCEEECCCCCCCCcch-hh-CCCC
Confidence 45555555544432 333 4677778887433 3445554 56788889999998888888 65 8899
Q ss_pred EEeccCCcccccccccccCccC-------ceecccccccccccCCC-CCCCCCCC
Q 017858 318 LVEVPDSDIERLWHCVKHYSKL-------NQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 318 ~L~l~~~~l~~lp~~i~~l~~L-------~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
+|+|++|.+..+|. +.. +| ++|++++|. ++ .+|. +..+++|+
T Consensus 184 ~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~-~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 184 ALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR-IT-HIPENILSLDPTC 233 (571)
T ss_dssp EEECCSSCCSSCCC-CC----------CCEEEECCSSC-CC-CCCGGGGGSCTTE
T ss_pred EEECcCCCCCchhh-HHH--hhhcccccceEEecCCCc-ce-ecCHHHhcCCCCC
Confidence 99999999988887 654 67 999999987 77 7887 77777764
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.49 E-value=3.6e-07 Score=86.87 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=50.8
Q ss_pred CCCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCCCCCCCCCCCCCCceEEeccCCcccccccccccCccCce
Q 017858 263 PKLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYPLKSLPSNLSAKKLVLVEVPDSDIERLWHCVKHYSKLNQ 341 (365)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~i~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 341 (365)
++|++|++++| .++.+|. ..+++|++|++++|.+..+|... .+|++|++++|.+..+| .++.+++|++
T Consensus 131 ~~L~~L~L~~n--------~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNN--------QLEKLPELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSS--------CCSSCCCCTTCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCCEEECcCC--------CCCCCcccCCCCCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCc-cccCCCCCCE
Confidence 57888888544 3445666 77778888888888777776543 46777777777766666 4666666666
Q ss_pred ecccccc
Q 017858 342 IIHAACN 348 (365)
Q Consensus 342 L~l~~~~ 348 (365)
|++++|.
T Consensus 200 L~l~~N~ 206 (454)
T 1jl5_A 200 IYADNNS 206 (454)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 6666554
No 133
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.48 E-value=4.1e-07 Score=93.22 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=78.0
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCC-CCCC-
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSL-PSNL- 311 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~l-p~~~- 311 (365)
..++.+.+..+.+ ..+.+..|..+++|+.|++++|. ++.+++ ..+++|++|++++|.+..+ |..+
T Consensus 266 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~--------i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 266 SSVRHLDLSHGFV--FSLNSRVFETLKDLKVLNLAYNK--------INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp SCCCEEECTTCCC--CEECSCCSSSCCCCCEEEEESCC--------CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred CCccEEECCCCcc--cccChhhhhcCCCCCEEECCCCc--------CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 4456665554443 34567778888999999996554 434433 6778899999999988876 4455
Q ss_pred CCCCceEEeccCCccccccc-ccccCccCceecccccccccccCCC
Q 017858 312 SAKKLVLVEVPDSDIERLWH-CVKHYSKLNQIIHAACNMLTAKIPN 356 (365)
Q Consensus 312 ~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~lp~ 356 (365)
++++|++|++++|.+..+|. .+..+++|++|++++|. ++ .+|.
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~-~i~~ 379 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LT-TIHF 379 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SC-CCSS
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CC-cccC
Confidence 48899999999998877754 57888899999988887 55 5543
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.40 E-value=5.2e-07 Score=82.64 Aligned_cols=110 Identities=15% Similarity=0.272 Sum_probs=78.0
Q ss_pred ccCccccCCCCCCceEEEecCccCCC-----------------ccccccccCC---CCC-CcccEEEEeCCCCCCCCCCC
Q 017858 253 RLNPSTFTKMPKLRFLKFYRSSVNGK-----------------NKCKISYLQD---PGF-AEVKYLHWYGYPLKSLPSNL 311 (365)
Q Consensus 253 ~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~l~~lp~---~~l-~~L~~L~l~~~~i~~lp~~~ 311 (365)
.+++..|..+++|+.|++++|.+.+. ....+..+|. ..+ ..+++|++++|.++.+|..+
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 34556667777777777755443211 0113444554 223 46888999999999998877
Q ss_pred -CCCCceEEeccC-Ccccccccc-cccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 312 -SAKKLVLVEVPD-SDIERLWHC-VKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 312 -~l~~L~~L~l~~-~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
...+|+.|++++ |.++.+|.. +..+++|++|++++|+ ++ .+|. +.++++|+
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~-~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IH-SLPSYGLENLKKLR 229 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CC-CCCSSSCTTCCEEE
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cC-ccChhhhccchHhh
Confidence 577899999986 578999865 5899999999999998 78 7886 77776653
No 135
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.30 E-value=4.4e-08 Score=89.05 Aligned_cols=121 Identities=16% Similarity=0.253 Sum_probs=70.9
Q ss_pred CceEEEEeeccc-cccccccCccccCCCCCCceEEEecCccCCCccccccc--cCC--CCCC-cccEEEEeCCC--C--C
Q 017858 236 TEKIEGICLDMS-KIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISY--LQD--PGFA-EVKYLHWYGYP--L--K 305 (365)
Q Consensus 236 ~~~~~~l~l~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--lp~--~~l~-~L~~L~l~~~~--i--~ 305 (365)
.+.++.+.+..+ ......+ +..+.++++|+.|++++|. .++. ++. ..++ +|++|++++|. + .
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l-~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFAL-QTLLSSCSRLDELNLSWCF-------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHH-HHHHHHCTTCCEEECCCCT-------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred CCCCCEEECCCCCCCCHHHH-HHHHhcCCCCCEEcCCCCC-------CcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 455666655554 2221111 3345567777777775551 1211 333 5566 78888888874 3 3
Q ss_pred CCCCCC-CCCCceEEeccCCc-c-cccccccccCccCceeccccccccccc-CCCCCCCCCCC
Q 017858 306 SLPSNL-SAKKLVLVEVPDSD-I-ERLWHCVKHYSKLNQIIHAACNMLTAK-IPNPTLMPRMK 364 (365)
Q Consensus 306 ~lp~~~-~l~~L~~L~l~~~~-l-~~lp~~i~~l~~L~~L~l~~~~~l~~~-lp~~~~l~~L~ 364 (365)
.+|..+ ++++|++|++++|. + ...+..+..+++|++|++++|..+... +..++++++|+
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 455555 37788888888887 4 355667788888888888888523201 11255566654
No 136
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.21 E-value=3.2e-06 Score=78.92 Aligned_cols=192 Identities=11% Similarity=0.071 Sum_probs=105.3
Q ss_pred CEEEEEEeCCCCh--------HhHHHHHccCCCC---C--CCcEEEEEeCchhHHHhcC---------ccceEEeCCCCH
Q 017858 1 MKVLIVFDDVTCF--------SQIESLIGSLDWL---T--PVSRIIITTRNKQVLRNWG---------VRKIYEMKALEY 58 (365)
Q Consensus 1 kr~LlVlDdv~~~--------~~~~~l~~~~~~~---~--~gs~ilvTTR~~~v~~~~~---------~~~~~~l~~L~~ 58 (365)
++++||+||++.. +.+..+...+... + .+..+|+|||...+..... ....+++.+++.
T Consensus 138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 4789999999853 3344333332211 2 3456888988665432111 122499999999
Q ss_pred HHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcC------CCchhHHHHhHh-hc-----cc---CHHHHHHHHHHHhhcC
Q 017858 59 HHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQ------GVPLALKVLGCF-LH-----KR---EKEVWESATDKLQRIL 123 (365)
Q Consensus 59 ~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~------glPlai~~~~~~-l~-----~~---~~~~w~~~~~~l~~~~ 123 (365)
++++++|...+........-..+.+..|++.|+ |.|..+..+... .. .. +...+..+......
T Consensus 218 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-- 295 (412)
T 1w5s_A 218 RELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-- 295 (412)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--
Confidence 999999976542111111112366788999999 999655444332 11 11 23333333332110
Q ss_pred cccHHHHHHHHHhcCChhhhhhhhhhcccc----CCcCHHHHHHHH-----HHcCCC------cccchhHHhhcCceeEc
Q 017858 124 YPSILEVLKISYDSLDDKEKNIFLDVACFF----QGEDVDLVMKFF-----NASGFY------PEIGMSVLVDKSLIAID 188 (365)
Q Consensus 124 ~~~~~~~l~~sy~~L~~~~~~~~~~ls~fp----~~~~~~~l~~~w-----~~~~~~------~~~~l~~L~~~sLl~~~ 188 (365)
...+.-.+..||+..+.++..++.+. ..+....+...+ ...|.. ...+++.|.+.+++...
T Consensus 296 ----~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 296 ----ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp --------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ----cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 12234456788999999998888653 224444333222 222321 13458899999999875
Q ss_pred c-----CCcEEecHH
Q 017858 189 S-----HKKITMHDL 198 (365)
Q Consensus 189 ~-----~~~~~~H~l 198 (365)
. .++|++|.+
T Consensus 372 ~~~~~~~g~~~~~~l 386 (412)
T 1w5s_A 372 PSGRGMRGRTTLFRL 386 (412)
T ss_dssp CC-------CCEEEE
T ss_pred cccCCCCCceeEEEe
Confidence 3 344555543
No 137
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.19 E-value=5.2e-08 Score=88.56 Aligned_cols=122 Identities=13% Similarity=0.124 Sum_probs=86.5
Q ss_pred CCCceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCcccccc--ccCC--CCCCcccEEEEeCC-CCCC--
Q 017858 234 TGTEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKIS--YLQD--PGFAEVKYLHWYGY-PLKS-- 306 (365)
Q Consensus 234 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~lp~--~~l~~L~~L~l~~~-~i~~-- 306 (365)
...+.++.+.+..+.... ..+..+.++++|+.|++++|. .++ .++. ..+++|++|++++| .+..
T Consensus 115 ~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~-------~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCS-------GFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp TTBCCCSEEECTTCBCCH--HHHHHHTTCTTCSEEECTTCB-------SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred hhCCCCCEEeCcCcccCH--HHHHHHhcCCCCCEEECCCCC-------CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 345667777766654321 224567788999999996553 232 2444 66788999999999 7774
Q ss_pred CCCCC-CCC-CceEEeccCCcc----cccccccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 307 LPSNL-SAK-KLVLVEVPDSDI----ERLWHCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 307 lp~~~-~l~-~L~~L~l~~~~l----~~lp~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
+|..+ .++ +|++|++++|.+ ..+|..+..+++|++|++++|..++...+. ++.+++|+
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 56556 488 999999999954 567888888999999999999843314444 77777775
No 138
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.17 E-value=7.9e-08 Score=89.30 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=74.6
Q ss_pred ceEEEEeeccccccccc---cCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCC-----
Q 017858 237 EKIEGICLDMSKIKEIR---LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKS----- 306 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~----- 306 (365)
..++.+.+..+.+.... +.+..+..+++|+.|++++|.+.. .....+|. ..+++|++|++++|.+..
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~---~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH---LGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH---HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc---HHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 45667776666554221 223367788889999996554210 00124555 667888999999988764
Q ss_pred CCCCC--C-CCCceEEeccCCcccc-----ccccc-ccCccCceecccccc
Q 017858 307 LPSNL--S-AKKLVLVEVPDSDIER-----LWHCV-KHYSKLNQIIHAACN 348 (365)
Q Consensus 307 lp~~~--~-l~~L~~L~l~~~~l~~-----lp~~i-~~l~~L~~L~l~~~~ 348 (365)
+|..+ + +++|++|+|++|.+.. +|..+ .++++|++|++++|.
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 35554 2 7889999999998876 88887 668899999999887
No 139
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.99 E-value=7.2e-07 Score=82.76 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=85.6
Q ss_pred ceEEEEeeccccccccccC--ccccCCCCCCceEEEecCccCCCcccccc-ccC-C-CCCCcccEEEEeCCCC-----CC
Q 017858 237 EKIEGICLDMSKIKEIRLN--PSTFTKMPKLRFLKFYRSSVNGKNKCKIS-YLQ-D-PGFAEVKYLHWYGYPL-----KS 306 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~lp-~-~~l~~L~~L~l~~~~i-----~~ 306 (365)
+.++.+.+..+.+....++ ...+..+++|+.|++++|.+.. ..+. ..| . ..+++|++|++++|.+ ..
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~---~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 235 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP---EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH---HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH---hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH
Confidence 5677787777766433332 1456778899999996544210 0000 234 3 6778999999999998 56
Q ss_pred CCCCC-CCCCceEEeccCCcccc-----ccccc--ccCccCceeccccccccccc-----CCC-C-CCCCCCC
Q 017858 307 LPSNL-SAKKLVLVEVPDSDIER-----LWHCV--KHYSKLNQIIHAACNMLTAK-----IPN-P-TLMPRMK 364 (365)
Q Consensus 307 lp~~~-~l~~L~~L~l~~~~l~~-----lp~~i--~~l~~L~~L~l~~~~~l~~~-----lp~-~-~~l~~L~ 364 (365)
+|..+ .+++|++|+|++|.+.. +|..+ +.+++|++|++++|. ++ . +|. + .++++|+
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~-~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IE-LDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CB-HHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CC-HHHHHHHHHHHHhcCCCce
Confidence 77777 48999999999998854 46666 448999999999998 66 4 665 4 4456554
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.89 E-value=1.6e-05 Score=72.00 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=72.9
Q ss_pred CCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCce-EEeccCCcccccc-cccc
Q 017858 262 MPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLV-LVEVPDSDIERLW-HCVK 334 (365)
Q Consensus 262 l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~-~L~l~~~~l~~lp-~~i~ 334 (365)
+++|+.++++ ++ .++.+|. ..+.+|+.+++.+| +..++... ++.+|+ .+++.+ .+..++ ..+.
T Consensus 225 ~~~L~~l~L~-~n-------~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 225 MPNLVSLDIS-KT-------NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp CTTCCEEECT-TB-------CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred cCCCeEEECC-CC-------CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh
Confidence 6789999994 44 4667777 67788999999887 88888766 488898 999988 777774 5678
Q ss_pred cCccCceecccccccccccCCC--CCCCCCCC
Q 017858 335 HYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 335 ~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
.+++|+.+++++|. ++ .++. |.++++|+
T Consensus 295 ~c~~L~~l~l~~n~-i~-~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 295 GCDNLRYVLATGDK-IT-TLGDELFGNGVPSK 324 (329)
T ss_dssp TCTTEEEEEECSSC-CC-EECTTTTCTTCCCC
T ss_pred CCccCCEEEeCCCc-cC-ccchhhhcCCcchh
Confidence 89999999998777 66 6775 88888886
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.70 E-value=0.00017 Score=61.51 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=70.1
Q ss_pred EEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCchhHH-Hh-cCccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTC--FSQIESLIGSLDWLTPVSRIIITTRNKQVL-RN-WGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~-~~-~~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+.+||+||++. .+.++.+...+.....+..+|+||+..... .. ......+++++++.+|..+++...+.......+
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~ 206 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 206 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC
T ss_pred ceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 57999999974 455666766555445678899998765321 11 122357999999999999999988754332222
Q ss_pred cHHHHHHHHHHHcCCCchhHHHHhHh
Q 017858 78 GYEELSCKVMKYAQGVPLALKVLGCF 103 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~~~~~ 103 (365)
.+....|++.|+|.|..+..+...
T Consensus 207 --~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 207 --PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356788999999999888765543
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.56 E-value=4.3e-05 Score=66.77 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=52.6
Q ss_pred CCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCCCCCCCC--CceEEeccCCccc-cccc---
Q 017858 260 TKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLPSNLSAK--KLVLVEVPDSDIE-RLWH--- 331 (365)
Q Consensus 260 ~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp~~~~l~--~L~~L~l~~~~l~-~lp~--- 331 (365)
.++++|+.|+|++|.+.+ +..+|. ..+++|++|+|++|.+..+..--.+. +|++|+|++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~-----l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYR-----LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCC-----CGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred hhCCCCCEEECCCCCCCC-----CccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchh
Confidence 456788888886555331 223334 56788888888888887763211233 8888888888774 3442
Q ss_pred ----ccccCccCceecc
Q 017858 332 ----CVKHYSKLNQIIH 344 (365)
Q Consensus 332 ----~i~~l~~L~~L~l 344 (365)
.+..+++|+.||-
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 2567888888873
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=4.6e-05 Score=66.56 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCCCcccEEEEeCCCCCCCC---CCC-CCCCceEEeccCCcccccccccccCc--cCceecccccccccccCC
Q 017858 289 PGFAEVKYLHWYGYPLKSLP---SNL-SAKKLVLVEVPDSDIERLWHCVKHYS--KLNQIIHAACNMLTAKIP 355 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp---~~~-~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~l~~~lp 355 (365)
..+++|+.|+|++|.+..++ ..+ .+++|++|+|++|.+..+ ..+..+. +|++|++++|.... .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~-~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCD-TFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGG-GCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcc-ccC
Confidence 45789999999999998765 344 499999999999999877 3456665 99999999998544 555
No 144
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.49 E-value=1.1e-05 Score=73.99 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=36.8
Q ss_pred CcccEEEEeCCCCC-----CCCCCC-CC-CCceEEeccCCccccc-cc----ccccC-ccCceeccccccccc
Q 017858 292 AEVKYLHWYGYPLK-----SLPSNL-SA-KKLVLVEVPDSDIERL-WH----CVKHY-SKLNQIIHAACNMLT 351 (365)
Q Consensus 292 ~~L~~L~l~~~~i~-----~lp~~~-~l-~~L~~L~l~~~~l~~l-p~----~i~~l-~~L~~L~l~~~~~l~ 351 (365)
++|++|++++|.+. .++..+ .+ .+|++|++++|.+... +. .+..+ ++|++|++++|. ++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~ 209 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LG 209 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GG
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CC
Confidence 47777777777766 233333 23 3778888888777544 22 23344 478888888776 55
No 145
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.47 E-value=4.5e-05 Score=69.96 Aligned_cols=103 Identities=13% Similarity=0.206 Sum_probs=71.6
Q ss_pred ceEEEEeeccccccccccCc----cccCCCC-CCceEEEecCccCCCccccccccCC---CC-----CCcccEEEEeCCC
Q 017858 237 EKIEGICLDMSKIKEIRLNP----STFTKMP-KLRFLKFYRSSVNGKNKCKISYLQD---PG-----FAEVKYLHWYGYP 303 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~lp~---~~-----l~~L~~L~l~~~~ 303 (365)
..++.+.+..+.+.. ... ..|.+++ +|+.|++++|. ++.... .. .++|++|++++|.
T Consensus 22 ~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~--------l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 22 HGVTSLDLSLNNLYS--ISTVELIQAFANTPASVTSLNLSGNS--------LGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp TTCCEEECTTSCGGG--SCHHHHHHHHHTCCTTCCEEECCSSC--------GGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCceEEEccCCCCCh--HHHHHHHHHHHhCCCceeEEECcCCC--------CCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 347777666665533 333 5677888 89999996554 323221 22 2889999999999
Q ss_pred CCCCCCC-----C-CC-CCceEEeccCCccccccc-c----cccC-ccCceeccccccc
Q 017858 304 LKSLPSN-----L-SA-KKLVLVEVPDSDIERLWH-C----VKHY-SKLNQIIHAACNM 349 (365)
Q Consensus 304 i~~lp~~-----~-~l-~~L~~L~l~~~~l~~lp~-~----i~~l-~~L~~L~l~~~~~ 349 (365)
+...+.. + .+ ++|++|++++|.+...+. . +..+ ++|++|++++|..
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 8865543 2 23 799999999999977644 2 3332 6999999999973
No 146
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.45 E-value=1.6e-05 Score=75.19 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=63.7
Q ss_pred ceEEEEeeccccccccc--cCccccCCCCCCceEEEecCccCCCccccccc--cCC--CCCC----cccEEEEeCCCCC-
Q 017858 237 EKIEGICLDMSKIKEIR--LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISY--LQD--PGFA----EVKYLHWYGYPLK- 305 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--lp~--~~l~----~L~~L~l~~~~i~- 305 (365)
+.++.+.+..+.+.... ..+..+..+++|++|++++|. +.. +.. ..+. +|++|++++|.+.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--------l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE--------LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC--------CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc--------CChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence 34556666655543221 123456677888888885443 211 111 2233 6888888888876
Q ss_pred ----CCCCCC-CCCCceEEeccCCccccc-cccc-----ccCccCceecccccc
Q 017858 306 ----SLPSNL-SAKKLVLVEVPDSDIERL-WHCV-----KHYSKLNQIIHAACN 348 (365)
Q Consensus 306 ----~lp~~~-~l~~L~~L~l~~~~l~~l-p~~i-----~~l~~L~~L~l~~~~ 348 (365)
.+|..+ .+++|++|++++|.+... +..+ ...++|++|++++|.
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 356666 488888888888877532 2222 235678888888886
No 147
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.41 E-value=0.005 Score=56.45 Aligned_cols=172 Identities=15% Similarity=0.050 Sum_probs=103.0
Q ss_pred EEEEEeCCCChHh-------HHHHHccCCCCCCCcEEEEEeCchhHHHhc------CccceEEeCCCCHHHHHHHHHHhh
Q 017858 3 VLIVFDDVTCFSQ-------IESLIGSLDWLTPVSRIIITTRNKQVLRNW------GVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 3 ~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~------~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
.+||+||++.... +..+.... .+..||+||+.......+ .....+.+++++.++..++|...+
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 3899999985432 33333322 678899999876321111 112389999999999999999876
Q ss_pred hc---CCCCCccHHHHHHHHHHHcC---CCch-hHHHHhHhh--c-c---cCHHHHHHHHHHHhhcCcccHHHHHHHHHh
Q 017858 70 FK---QNHPDVGYEELSCKVMKYAQ---GVPL-ALKVLGCFL--H-K---REKEVWESATDKLQRILYPSILEVLKISYD 136 (365)
Q Consensus 70 ~~---~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~l--~-~---~~~~~w~~~~~~l~~~~~~~~~~~l~~sy~ 136 (365)
.. .....+ +....+++.|+ |.|. |+..+-... . + -+.+.+..++++... ..+..+++
T Consensus 211 ~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~ 280 (384)
T 2qby_B 211 EYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVK 280 (384)
T ss_dssp HHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc-------chHHHHHH
Confidence 32 222222 45667777887 8776 444333322 1 1 266777777765532 34667788
Q ss_pred cCChhhhhhhhhhccccCCcCHH-HHHHHHHHcCCC--c----ccchhHHhhcCceeEc
Q 017858 137 SLDDKEKNIFLDVACFFQGEDVD-LVMKFFNASGFY--P----EIGMSVLVDKSLIAID 188 (365)
Q Consensus 137 ~L~~~~~~~~~~ls~fp~~~~~~-~l~~~w~~~~~~--~----~~~l~~L~~~sLl~~~ 188 (365)
.|++..+..+..++....+-++. .........|.. . ..+++.|...++++..
T Consensus 281 ~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 281 ALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp SSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 99988888887777611101111 222222222311 1 3457889999999874
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.38 E-value=0.00043 Score=62.41 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=75.4
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCccc-EEEEeCCCCCCCCCCC-
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVK-YLHWYGYPLKSLPSNL- 311 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~-~L~l~~~~i~~lp~~~- 311 (365)
..++.+.+..+. ...++...|.++.+|+.+++. ++ ++.++. ..+.+|+ .+.+.+ .+..++...
T Consensus 226 ~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l~l~-~n--------i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF 293 (329)
T 3sb4_A 226 PNLVSLDISKTN--ATTIPDFTFAQKKYLLKIKLP-HN--------LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAF 293 (329)
T ss_dssp TTCCEEECTTBC--CCEECTTTTTTCTTCCEEECC-TT--------CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTT
T ss_pred CCCeEEECCCCC--cceecHhhhhCCCCCCEEECC-cc--------cceehHHHhhCChhccEEEEEcc-cceEEchhhh
Confidence 445666555443 356778899999999999994 43 446777 7788899 999998 788888665
Q ss_pred -CCCCceEEeccCCccccccc-ccccCccCceec
Q 017858 312 -SAKKLVLVEVPDSDIERLWH-CVKHYSKLNQII 343 (365)
Q Consensus 312 -~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~ 343 (365)
++.+|+.+++++|.+..++. .+.++++|+.+.
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 49999999999999999965 678899999875
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.12 E-value=0.00015 Score=66.38 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=54.9
Q ss_pred CCCCCceEEEecC--ccCCCccccccccCC----CCCCcccEEEEeCCCCCC-CCCCC----CCCCceEEeccCCcccc-
Q 017858 261 KMPKLRFLKFYRS--SVNGKNKCKISYLQD----PGFAEVKYLHWYGYPLKS-LPSNL----SAKKLVLVEVPDSDIER- 328 (365)
Q Consensus 261 ~l~~L~~L~l~~~--~~~~~~~~~l~~lp~----~~l~~L~~L~l~~~~i~~-lp~~~----~l~~L~~L~l~~~~l~~- 328 (365)
.+++|+.|+|+.+ +..|. ..++.+.. ..+++|++|++.+|.+.. .+..+ .+++|++|+|+.|.+..
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~--~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFD--GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCC--SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred cCCCCcEEEEeccccccccc--hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 6788888888521 11110 01212222 457889999998887652 11111 26789999998887754
Q ss_pred ----cccccccCccCceecccccc
Q 017858 329 ----LWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 329 ----lp~~i~~l~~L~~L~l~~~~ 348 (365)
++.++.++++|+.|++++|.
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHhhcccCCcceEEECCCCc
Confidence 56666788899999998886
No 150
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.09 E-value=3.9e-05 Score=75.03 Aligned_cols=84 Identities=23% Similarity=0.272 Sum_probs=44.8
Q ss_pred CCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCC-----CCCCC-CCCCceEEeccCCccccccc
Q 017858 260 TKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKS-----LPSNL-SAKKLVLVEVPDSDIERLWH 331 (365)
Q Consensus 260 ~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~-----lp~~~-~l~~L~~L~l~~~~l~~lp~ 331 (365)
.++++|++|++++|...+.. ...++. ..+++|++|++++|.+.. ++..+ ++++|++|++++|.+..+|.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~---~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~ 237 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKD---GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG 237 (592)
T ss_dssp HHCTTCSEEECTTCEEECCC---SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH
T ss_pred hhCCCCCEEECccccccCcc---hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH
Confidence 35666777777433321100 000222 345666677776666542 22222 25667777777766666666
Q ss_pred ccccCccCceecccc
Q 017858 332 CVKHYSKLNQIIHAA 346 (365)
Q Consensus 332 ~i~~l~~L~~L~l~~ 346 (365)
.+..+++|++|+++.
T Consensus 238 ~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 238 FFKAAANLEEFCGGS 252 (592)
T ss_dssp HHHHCTTCCEEEECB
T ss_pred HHhhhhHHHhhcccc
Confidence 666666666666653
No 151
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.02 E-value=4.7e-05 Score=72.00 Aligned_cols=108 Identities=6% Similarity=0.106 Sum_probs=75.7
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCC-CCCC--
Q 017858 237 EKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSL-PSNL-- 311 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~l-p~~~-- 311 (365)
+.++.+.+..+...... ....+..+++|++|++++|...+ .....++. ..+++|++|++++|.+... +..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~---~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTE---ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCH---HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCH---HHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 45667777666553322 12346788999999996554221 01113444 6678999999999998642 2222
Q ss_pred CCC----CceEEeccCCccc-----ccccccccCccCceecccccc
Q 017858 312 SAK----KLVLVEVPDSDIE-----RLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 312 ~l~----~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~ 348 (365)
.+. +|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 244 7999999999886 568889999999999999998
No 152
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.00 E-value=0.00021 Score=69.82 Aligned_cols=82 Identities=11% Similarity=-0.079 Sum_probs=41.7
Q ss_pred cCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCC----CCCCCCC-CCCCceEEeccCCccccccc
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPL----KSLPSNL-SAKKLVLVEVPDSDIERLWH 331 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i----~~lp~~~-~l~~L~~L~l~~~~l~~lp~ 331 (365)
+.++++|+.|+++++. +..+|. ..+++|+.|+++++.. ...+..+ .+.+|+.|+++++....+|.
T Consensus 216 ~~~~~~L~~L~L~~~~--------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~ 287 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFE--------ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287 (592)
T ss_dssp HHHCTTCCEEECSSCB--------GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG
T ss_pred HhhCCCCcEEeccCcc--------HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH
Confidence 3455666666663322 223333 4445555555553221 1122223 25556666665555555565
Q ss_pred ccccCccCceecccccc
Q 017858 332 CVKHYSKLNQIIHAACN 348 (365)
Q Consensus 332 ~i~~l~~L~~L~l~~~~ 348 (365)
.+..+++|++|++++|.
T Consensus 288 ~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp GGGGGGGCCEEEETTCC
T ss_pred HHhhcCCCcEEecCCCc
Confidence 55666666666666665
No 153
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.95 E-value=0.0075 Score=55.30 Aligned_cols=202 Identities=13% Similarity=0.081 Sum_probs=113.2
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCC----CCcEEEEEeCchhHHHhcC-------ccceEEeCCCCHHHHHHHHHHh
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLT----PVSRIIITTRNKQVLRNWG-------VRKIYEMKALEYHHAIRLFSRH 68 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~----~gs~ilvTTR~~~v~~~~~-------~~~~~~l~~L~~~e~~~L~~~~ 68 (365)
+.+||+|+++.. +....+...+.... .+..||+||+......... ....+++.+++.++..+++...
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 578999999754 44555555443211 4677888888765433321 1136999999999999999887
Q ss_pred hhcCCCCCccHHHHHHHHHHHc---------CCCchhHH-HHhHhhc-----cc---CHHHHHHHHHHHhhcCcccHHHH
Q 017858 69 AFKQNHPDVGYEELSCKVMKYA---------QGVPLALK-VLGCFLH-----KR---EKEVWESATDKLQRILYPSILEV 130 (365)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~~~c---------~glPlai~-~~~~~l~-----~~---~~~~w~~~~~~l~~~~~~~~~~~ 130 (365)
+........-..+....+++.+ +|.|..+. .+-.... +. +.+....+.+..... .
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~-------~ 278 (389)
T 1fnn_A 206 AKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFG-------I 278 (389)
T ss_dssp HHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCC-------C
T ss_pred HHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhh-------h
Confidence 6321101111235677888888 68764433 3322221 11 334444444333211 1
Q ss_pred HHHHHhcCChhhhhhhhhhcccc---C--CcCHHHHHHHHH----HcCCCc------ccchhHHhhcCceeEccC-----
Q 017858 131 LKISYDSLDDKEKNIFLDVACFF---Q--GEDVDLVMKFFN----ASGFYP------EIGMSVLVDKSLIAIDSH----- 190 (365)
Q Consensus 131 l~~sy~~L~~~~~~~~~~ls~fp---~--~~~~~~l~~~w~----~~~~~~------~~~l~~L~~~sLl~~~~~----- 190 (365)
+.-.+..|+.+.+.++..++.+. . .+....+...+. ..|... ...+++|...++|.....
T Consensus 279 ~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g 358 (389)
T 1fnn_A 279 SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEG 358 (389)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCC
Confidence 23345678888888877777543 2 233344433322 222211 245889999999987532
Q ss_pred --CcE-------EecHHHHHHHHHHHhhc
Q 017858 191 --KKI-------TMHDLLQELGREIVRQE 210 (365)
Q Consensus 191 --~~~-------~~H~lv~~~a~~~~~~~ 210 (365)
+++ ..|+++..+...+..+|
T Consensus 359 ~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 359 VRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp ----CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 322 24566666666655544
No 154
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.94 E-value=6.2e-05 Score=73.60 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=50.2
Q ss_pred cCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCCCC-----CCC-CCCCceEEeccCC-ccccc
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKSLP-----SNL-SAKKLVLVEVPDS-DIERL 329 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~lp-----~~~-~l~~L~~L~l~~~-~l~~l 329 (365)
+.++++|++|++++|.+.+. ....++. ..+++|++|++++|. ..++ ..+ ++++|++|++++| .+..+
T Consensus 152 ~~~~~~L~~L~L~~~~i~~~---~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l 227 (594)
T 2p1m_B 152 AATCRNLKELDLRESDVDDV---SGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227 (594)
T ss_dssp HHHCTTCCEEECTTCEEECC---CGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH
T ss_pred HHhCCCCCEEeCcCCccCCc---chHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH
Confidence 34667778887744332210 1112333 456677788877775 2222 111 2577888888777 56667
Q ss_pred ccccccCccCceeccccc
Q 017858 330 WHCVKHYSKLNQIIHAAC 347 (365)
Q Consensus 330 p~~i~~l~~L~~L~l~~~ 347 (365)
|..+..+++|++|+++.+
T Consensus 228 ~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 228 ATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHCTTCSEEECSBC
T ss_pred HHHHhcCCcceEcccccc
Confidence 777777778888876554
No 155
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.88 E-value=0.0067 Score=55.44 Aligned_cols=180 Identities=14% Similarity=0.081 Sum_probs=100.9
Q ss_pred EEEEEEeCCCCh------HhHHHHHccCCC-CCCCcEEEEEeCchhHHHhcCc-------cceEEeCCCCHHHHHHHHHH
Q 017858 2 KVLIVFDDVTCF------SQIESLIGSLDW-LTPVSRIIITTRNKQVLRNWGV-------RKIYEMKALEYHHAIRLFSR 67 (365)
Q Consensus 2 r~LlVlDdv~~~------~~~~~l~~~~~~-~~~gs~ilvTTR~~~v~~~~~~-------~~~~~l~~L~~~e~~~L~~~ 67 (365)
+.+||+|+++.. +.+..+...+.. ...+..+|+||+.......+.. ...+.+++++.++..+++..
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~ 208 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTK 208 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHH
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHH
Confidence 679999999753 334444433311 1345667888887644332211 14799999999999999998
Q ss_pred hhhcCCCCCccHHHHHHHHHHHcC---CCch-hHHHHhHhhc-----c--c-CHHHHHHHHHHHhhcCcccHHHHHHHHH
Q 017858 68 HAFKQNHPDVGYEELSCKVMKYAQ---GVPL-ALKVLGCFLH-----K--R-EKEVWESATDKLQRILYPSILEVLKISY 135 (365)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~l~-----~--~-~~~~w~~~~~~l~~~~~~~~~~~l~~sy 135 (365)
.+........-..+....+++.++ |.|. ++.++..... + . +.+.+..+++... ...+.-.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~ 281 (386)
T 2qby_A 209 RAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE-------RDRVRDII 281 (386)
T ss_dssp HHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------hchHHHHH
Confidence 653111111112355666777777 9887 3333332221 1 1 5566666555442 23456677
Q ss_pred hcCChhhhhhhhhhccccC-C---cCHHHHHHH----HHHcCCC------cccchhHHhhcCceeEc
Q 017858 136 DSLDDKEKNIFLDVACFFQ-G---EDVDLVMKF----FNASGFY------PEIGMSVLVDKSLIAID 188 (365)
Q Consensus 136 ~~L~~~~~~~~~~ls~fp~-~---~~~~~l~~~----w~~~~~~------~~~~l~~L~~~sLl~~~ 188 (365)
..+++..+..+..++...+ + +....+... ....|.. ...+++.|...++++..
T Consensus 282 ~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 282 LTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 8888888887777763221 2 223322111 1122221 13458889999999764
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.85 E-value=0.00012 Score=67.43 Aligned_cols=108 Identities=12% Similarity=0.153 Sum_probs=68.3
Q ss_pred eEEEEeeccccccccccC--cccc-CCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCC-----C
Q 017858 238 KIEGICLDMSKIKEIRLN--PSTF-TKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKS-----L 307 (365)
Q Consensus 238 ~~~~l~l~~~~~~~~~~~--~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~-----l 307 (365)
.++.+.+..+.+....+. ...+ ...+.|+.|++++|.+.. .....++. ...++|++|++++|.+.. +
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~---~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA---AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH---HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCCh---HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence 467776666655322110 1112 345789999995544211 01112333 456789999999998763 3
Q ss_pred CCCC-CCCCceEEeccCCcccc-----cccccccCccCceecccccc
Q 017858 308 PSNL-SAKKLVLVEVPDSDIER-----LWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 308 p~~~-~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 348 (365)
+..+ ..++|++|+|++|.++. ++..+...++|++|++++|.
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 3444 36789999999998753 45556677899999999987
No 157
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.80 E-value=0.0038 Score=52.11 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchhHH-Hh-cCccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQVL-RN-WGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~-~~-~~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+.+||+||++.. +..+.+...+.....+.++|+||+..... .. ......+++.+++.++..+++.+.+.......+
T Consensus 103 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (226)
T 2chg_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT 182 (226)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 578999999854 33455554443345677899998875321 11 111237899999999999999987743222111
Q ss_pred cHHHHHHHHHHHcCCCchhHHH
Q 017858 78 GYEELSCKVMKYAQGVPLALKV 99 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~ 99 (365)
.+....+++.++|.|..+..
T Consensus 183 --~~~~~~l~~~~~g~~r~l~~ 202 (226)
T 2chg_A 183 --EDGLEALIYISGGDFRKAIN 202 (226)
T ss_dssp --HHHHHHHHHHHTTCHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHH
Confidence 35677888999999986543
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.73 E-value=0.00022 Score=65.62 Aligned_cols=89 Identities=9% Similarity=0.056 Sum_probs=47.9
Q ss_pred ceEEEEeeccccccccc--cCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCC-----C
Q 017858 237 EKIEGICLDMSKIKEIR--LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKS-----L 307 (365)
Q Consensus 237 ~~~~~l~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~-----l 307 (365)
..++.+.+..+.+.... .....+...++|++|+|++|.+.. ..+..++. ...++|+.|++++|.++. +
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~---~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD---EGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH---HHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc---HHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 45666666666543221 112334566778888885443211 00111222 344567888888887753 2
Q ss_pred CCCC-CCCCceEEeccCCcccc
Q 017858 308 PSNL-SAKKLVLVEVPDSDIER 328 (365)
Q Consensus 308 p~~~-~l~~L~~L~l~~~~l~~ 328 (365)
+..+ ..++|++|+|++|.++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2223 25678888888887653
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.64 E-value=0.00019 Score=59.15 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=71.5
Q ss_pred CceEEEEeeccc-cccccc--cCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCC----
Q 017858 236 TEKIEGICLDMS-KIKEIR--LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKS---- 306 (365)
Q Consensus 236 ~~~~~~l~l~~~-~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~---- 306 (365)
...++.+.+..+ .+.... .....+...+.|++|+|++|.+.. .....+.. ...++|++|++++|.|..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~---~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND---PVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH---HHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh---HHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455677777665 543221 123445667889999996554221 01111222 334679999999999873
Q ss_pred -CCCCC-CCCCceEEec--cCCcccc-----cccccccCccCceecccccc
Q 017858 307 -LPSNL-SAKKLVLVEV--PDSDIER-----LWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 307 -lp~~~-~l~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 348 (365)
+...+ ...+|++|+| ++|.++. +...+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 44445 3678999999 8888753 45566677899999999886
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.51 E-value=0.00045 Score=56.83 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=63.6
Q ss_pred cccCCCCCCceEEEecC-ccCCCccccccccCC--CCCCcccEEEEeCCCCCC-----CCCCC-CCCCceEEeccCCccc
Q 017858 257 STFTKMPKLRFLKFYRS-SVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKS-----LPSNL-SAKKLVLVEVPDSDIE 327 (365)
Q Consensus 257 ~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~-----lp~~~-~l~~L~~L~l~~~~l~ 327 (365)
..+...+.|+.|+|++| .+.. ..+..+.. ...++|++|++++|.+.. +...+ ..++|++|+|++|.++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~---~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPV---PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCH---HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCH---HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 45677899999999765 3221 11122333 556889999999999863 33333 2578999999999885
Q ss_pred c-----cccccccCccCceecc--cccc
Q 017858 328 R-----LWHCVKHYSKLNQIIH--AACN 348 (365)
Q Consensus 328 ~-----lp~~i~~l~~L~~L~l--~~~~ 348 (365)
. +...+...++|++|++ ++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 4 5677788889999999 7776
No 161
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0083 Score=53.44 Aligned_cols=99 Identities=9% Similarity=0.121 Sum_probs=64.1
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchhH-HHh-cCccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQV-LRN-WGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v-~~~-~~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+.+||+||++.. +.++.+...+.....++++|+||+...- ... ......+++.+++.++..+++...+.......+
T Consensus 108 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (323)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYT 187 (323)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC
T ss_pred ceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 679999999853 3344444444333467788888876431 111 122248999999999999999987643222111
Q ss_pred cHHHHHHHHHHHcCCCch-hHHHHhH
Q 017858 78 GYEELSCKVMKYAQGVPL-ALKVLGC 102 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPl-ai~~~~~ 102 (365)
++.+..|++.|+|.|. |+..+..
T Consensus 188 --~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 188 --NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2567889999999995 4444443
No 162
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.44 E-value=0.011 Score=53.97 Aligned_cols=177 Identities=12% Similarity=0.032 Sum_probs=101.1
Q ss_pred CEEEEEEeCCCChHh-------HHHHHccCCCC--CCCcEEEEEeCchhH--------HHhcCccceEEeCCCCHHHHHH
Q 017858 1 MKVLIVFDDVTCFSQ-------IESLIGSLDWL--TPVSRIIITTRNKQV--------LRNWGVRKIYEMKALEYHHAIR 63 (365)
Q Consensus 1 kr~LlVlDdv~~~~~-------~~~l~~~~~~~--~~gs~ilvTTR~~~v--------~~~~~~~~~~~l~~L~~~e~~~ 63 (365)
++.+||+|+++.... +..+....... ..+..+|.||+.... ...+. ...+.+++++.++..+
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~ 208 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRD 208 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHH
Confidence 367999999985431 33333322211 345678888876632 11111 1478999999999999
Q ss_pred HHHHhhh---cCCCCCccHHHHHHHHHHHcC---CCch-hHHHHhHhhc-----c---cCHHHHHHHHHHHhhcCcccHH
Q 017858 64 LFSRHAF---KQNHPDVGYEELSCKVMKYAQ---GVPL-ALKVLGCFLH-----K---REKEVWESATDKLQRILYPSIL 128 (365)
Q Consensus 64 L~~~~~~---~~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~l~-----~---~~~~~w~~~~~~l~~~~~~~~~ 128 (365)
++...+. ......+ +....+++.++ |.|. |+..+..+.. + -+.+.+..+++... .
T Consensus 209 il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~ 278 (387)
T 2v1u_A 209 ILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE-------R 278 (387)
T ss_dssp HHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------H
T ss_pred HHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------h
Confidence 9998753 2222223 34566777777 9983 3333322221 1 15666666666542 2
Q ss_pred HHHHHHHhcCChhhhhhhhhhc-cccC--CcCHHHHHHH----HHHcCCC------cccchhHHhhcCceeEc
Q 017858 129 EVLKISYDSLDDKEKNIFLDVA-CFFQ--GEDVDLVMKF----FNASGFY------PEIGMSVLVDKSLIAID 188 (365)
Q Consensus 129 ~~l~~sy~~L~~~~~~~~~~ls-~fp~--~~~~~~l~~~----w~~~~~~------~~~~l~~L~~~sLl~~~ 188 (365)
..+.-++..+++..+..+..++ .+.. .+....+.+. ....|.. ...+++.|...++++..
T Consensus 279 ~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 279 DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 2456678889998888877766 3432 1233322222 2222321 13457888999999874
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.44 E-value=0.0045 Score=47.58 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=33.6
Q ss_pred ccc--ccCCCCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcc
Q 017858 282 KIS--YLQDPGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDI 326 (365)
Q Consensus 282 ~l~--~lp~~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l 326 (365)
.++ .+|..--.+|++|+|++|.|+.+|... .+.+|++|+|++|.+
T Consensus 19 ~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 19 GLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 354 566433356888999999999988776 388899999988855
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.35 E-value=0.0078 Score=55.81 Aligned_cols=71 Identities=21% Similarity=0.183 Sum_probs=39.4
Q ss_pred CCCCcccEEEEeCCCCC-----CCCCCC--CCCCceEEeccCCccccccc-ccccCccCceecccccccccccCCC--CC
Q 017858 289 PGFAEVKYLHWYGYPLK-----SLPSNL--SAKKLVLVEVPDSDIERLWH-CVKHYSKLNQIIHAACNMLTAKIPN--PT 358 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~-----~lp~~~--~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~lp~--~~ 358 (365)
..+.+|+.+.+.++.+. .++... ++.+|+.+.+. +.+..++. .+..+++|+.+.+..+ ++ .++. |.
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~-~I~~~aF~ 343 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VT-QINFSAFN 343 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CC-EECTTSSS
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--cc-EEcHHhCC
Confidence 44566666666665543 344433 36666666666 34555533 3456667777766543 44 4543 55
Q ss_pred CCCCCC
Q 017858 359 LMPRMK 364 (365)
Q Consensus 359 ~l~~L~ 364 (365)
++ +|+
T Consensus 344 ~~-~L~ 348 (401)
T 4fdw_A 344 NT-GIK 348 (401)
T ss_dssp SS-CCC
T ss_pred CC-CCC
Confidence 55 553
No 165
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.29 E-value=0.0015 Score=53.00 Aligned_cols=80 Identities=13% Similarity=0.240 Sum_probs=47.1
Q ss_pred CCceEEEecCccCCCccccccccCC-CCCCcccEEEEeCCC-CCC--CCCCC-CC----CCceEEeccCC-cccc--ccc
Q 017858 264 KLRFLKFYRSSVNGKNKCKISYLQD-PGFAEVKYLHWYGYP-LKS--LPSNL-SA----KKLVLVEVPDS-DIER--LWH 331 (365)
Q Consensus 264 ~L~~L~l~~~~~~~~~~~~l~~lp~-~~l~~L~~L~l~~~~-i~~--lp~~~-~l----~~L~~L~l~~~-~l~~--lp~ 331 (365)
.|+.||++++... +. -+.. ..+++|+.|+|++|. ++. +- .+ .+ ++|++|+|++| +++. + .
T Consensus 62 ~L~~LDLs~~~It---d~---GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~ 133 (176)
T 3e4g_A 62 KIQAIDATDSCIM---SI---GFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGI-I 133 (176)
T ss_dssp CEEEEEEESCCCC---GG---GGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHH-H
T ss_pred eEeEEeCcCCCcc---HH---HHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHH-H
Confidence 5778888543311 01 1222 567778888888875 431 11 11 12 35888888887 4533 2 2
Q ss_pred ccccCccCceeccccccccc
Q 017858 332 CVKHYSKLNQIIHAACNMLT 351 (365)
Q Consensus 332 ~i~~l~~L~~L~l~~~~~l~ 351 (365)
.+..+++|++|++++|..++
T Consensus 134 ~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCC
T ss_pred HHhcCCCCCEEECCCCCCCC
Confidence 35567888888888886444
No 166
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.25 E-value=0.00028 Score=68.85 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=23.0
Q ss_pred CCcccEEEEeCC-CCCCCCCCC-CCCCceEEeccCC-------cccccccccccCccCcee
Q 017858 291 FAEVKYLHWYGY-PLKSLPSNL-SAKKLVLVEVPDS-------DIERLWHCVKHYSKLNQI 342 (365)
Q Consensus 291 l~~L~~L~l~~~-~i~~lp~~~-~l~~L~~L~l~~~-------~l~~lp~~i~~l~~L~~L 342 (365)
+++|++|++++| .+..+|..+ .+++|+.|+++++ .+..++..+.++++|+.|
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence 345555555554 233333333 2445555553322 233344444555555555
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.03 E-value=0.019 Score=53.16 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=31.7
Q ss_pred CCCCcccEEEEeCCCCCCCCCCC-CCCCceEEeccCCccccccc-ccccCccCceecccc
Q 017858 289 PGFAEVKYLHWYGYPLKSLPSNL-SAKKLVLVEVPDSDIERLWH-CVKHYSKLNQIIHAA 346 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp~~~-~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~ 346 (365)
..+.+|+.+++.+|.+..+|... ...+|+.+.+.. .+..++. .+..+++|+.+++..
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred hCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence 44555666666666666665554 345666666653 3444432 345566666666654
No 168
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.49 E-value=0.0061 Score=55.66 Aligned_cols=107 Identities=10% Similarity=0.150 Sum_probs=62.7
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCceEEEecCccCCCccccccccCCCCCCcccEEEEeCC--C------CCCC
Q 017858 236 TEKIEGICLDMSKIKEIRLNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQDPGFAEVKYLHWYGY--P------LKSL 307 (365)
Q Consensus 236 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~~~l~~L~~L~l~~~--~------i~~l 307 (365)
.+.++.+.+..+. ...+++ + .+++|+.|++..+.... ..+..+....+++|++|+|+.+ . +..+
T Consensus 171 ~P~L~~L~L~g~~--~l~l~~--~-~~~~L~~L~L~~~~l~~---~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 171 MPLLNNLKIKGTN--NLSIGK--K-PRPNLKSLEIISGGLPD---SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp CTTCCEEEEECCB--TCBCCS--C-BCTTCSEEEEECSBCCH---HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred CCCCcEEEEeCCC--Cceecc--c-cCCCCcEEEEecCCCCh---HHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 3556777765442 123333 3 37899999995433110 0000000036789999998632 1 2222
Q ss_pred CCCC---CCCCceEEeccCCcccc-ccccc---ccCccCceeccccccccc
Q 017858 308 PSNL---SAKKLVLVEVPDSDIER-LWHCV---KHYSKLNQIIHAACNMLT 351 (365)
Q Consensus 308 p~~~---~l~~L~~L~l~~~~l~~-lp~~i---~~l~~L~~L~l~~~~~l~ 351 (365)
...+ .+++|++|+|++|.+.. .+..+ ..+++|++|+++.|. ++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~ 292 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LT 292 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CB
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CC
Confidence 2222 27899999999998742 22222 358899999999886 44
No 169
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.39 E-value=0.005 Score=49.89 Aligned_cols=72 Identities=10% Similarity=0.056 Sum_probs=47.3
Q ss_pred CcccEEEEeCCCCCC--CCCCCCCCCceEEeccCC-ccccc-ccccccC----ccCceeccccccccccc--CCCCCCCC
Q 017858 292 AEVKYLHWYGYPLKS--LPSNLSAKKLVLVEVPDS-DIERL-WHCVKHY----SKLNQIIHAACNMLTAK--IPNPTLMP 361 (365)
Q Consensus 292 ~~L~~L~l~~~~i~~--lp~~~~l~~L~~L~l~~~-~l~~l-p~~i~~l----~~L~~L~l~~~~~l~~~--lp~~~~l~ 361 (365)
..|+.|+++++.++. +..-.++++|+.|+|++| .++.- =..+..+ ++|++|++++|..++ . +-.++.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHhcCC
Confidence 569999999998763 322225899999999999 45431 1223333 479999999997554 3 11145555
Q ss_pred CCC
Q 017858 362 RMK 364 (365)
Q Consensus 362 ~L~ 364 (365)
+|+
T Consensus 140 ~L~ 142 (176)
T 3e4g_A 140 NLK 142 (176)
T ss_dssp TCC
T ss_pred CCC
Confidence 554
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.06 E-value=0.036 Score=42.43 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=22.1
Q ss_pred EEEeCCCCC--CCCCCCCCCCceEEeccCCccccccccc-ccCccCceeccccc
Q 017858 297 LHWYGYPLK--SLPSNLSAKKLVLVEVPDSDIERLWHCV-KHYSKLNQIIHAAC 347 (365)
Q Consensus 297 L~l~~~~i~--~lp~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~ 347 (365)
++-+++.++ .+|..+ ..+|++|+|++|.|..+|.+. ..+++|+.|+|++|
T Consensus 13 v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344444444 444322 123445555555555444332 44445555555444
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.05 E-value=0.085 Score=48.08 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=48.8
Q ss_pred ccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccccc
Q 017858 256 PSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLW 330 (365)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~lp 330 (365)
...|..+..|+.+.+ .++ ++.++. ..+.+|+.+.+.++.++.++... ++.+|+.+.+..+ +..++
T Consensus 256 ~~aF~~~~~l~~i~l-~~~--------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 256 SFLLQNCTALKTLNF-YAK--------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp TTTTTTCTTCCEEEE-CCC--------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred ccccceeehhccccc-ccc--------ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence 445555555666555 222 334444 55567777777777777776554 3677777777543 55553
Q ss_pred -cccccCccCceecccc
Q 017858 331 -HCVKHYSKLNQIIHAA 346 (365)
Q Consensus 331 -~~i~~l~~L~~L~l~~ 346 (365)
..+.++.+|+.+.+..
T Consensus 326 ~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 326 VYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTTTCTTCCCCCCCT
T ss_pred HHHhhCCCCCCEEEECC
Confidence 3456777777777654
No 172
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.90 E-value=0.093 Score=46.55 Aligned_cols=96 Identities=13% Similarity=0.121 Sum_probs=63.4
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchhH-HHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQV-LRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v-~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+.++|+|+++.. +.++.+...+.....++++|+||....- .... .-...+++.+++.++..+++...+.......
T Consensus 111 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~- 189 (327)
T 1iqp_A 111 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL- 189 (327)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEE-
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCC-
Confidence 568999999854 4455555544434567788888876531 1111 1123789999999999999988764333211
Q ss_pred cHHHHHHHHHHHcCCCchhHHH
Q 017858 78 GYEELSCKVMKYAQGVPLALKV 99 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~ 99 (365)
..+....|++.++|.|..+..
T Consensus 190 -~~~~~~~l~~~~~g~~r~~~~ 210 (327)
T 1iqp_A 190 -TEEGLQAILYIAEGDMRRAIN 210 (327)
T ss_dssp -CHHHHHHHHHHHTTCHHHHHH
T ss_pred -CHHHHHHHHHHCCCCHHHHHH
Confidence 235677889999999976543
No 173
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.60 E-value=0.14 Score=46.39 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=62.9
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchh-HHHh-cCccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~-~~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+.+||+||++.. +..+.+...+.....+..+|+||.... +... ......+++.+++.++..+++...+.......+
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~ 199 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC
T ss_pred eEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 468999999743 445555555443445677777776443 1111 122357999999999999999877633222111
Q ss_pred cHHHHHHHHHHHcCCCchhHHHH
Q 017858 78 GYEELSCKVMKYAQGVPLALKVL 100 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~~ 100 (365)
.+.+..|++.++|.|..+..+
T Consensus 200 --~~a~~~l~~~~~G~~r~~~~~ 220 (373)
T 1jr3_A 200 --PRALQLLARAAEGSLRDALSL 220 (373)
T ss_dssp --HHHHHHHHHHSSSCHHHHHHH
T ss_pred --HHHHHHHHHHCCCCHHHHHHH
Confidence 255778999999999876544
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.20 E-value=0.059 Score=49.55 Aligned_cols=95 Identities=12% Similarity=0.150 Sum_probs=51.0
Q ss_pred ccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccccc
Q 017858 256 PSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLW 330 (365)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~lp 330 (365)
...|..+.+|+.+.+ .++ ++.++. ..+.+|+.+++..+ ++.++... ++.+|+.+.+..+ +..++
T Consensus 290 ~~~F~~~~~L~~i~l-~~~--------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKL-LDS--------VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TTTTTTCTTCCEEEE-CTT--------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ccccccccccccccc-ccc--------cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 344555555555555 222 334444 44566666666532 55665444 3667777777654 55553
Q ss_pred -cccccCccCceecccccccccccCCC-CCCCCCCC
Q 017858 331 -HCVKHYSKLNQIIHAACNMLTAKIPN-PTLMPRMK 364 (365)
Q Consensus 331 -~~i~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 364 (365)
..+..+.+|+.+++..+ ++ .+.. |.+.++|+
T Consensus 359 ~~aF~~C~~L~~i~lp~~--~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR--LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG--GG-GGGGGBCTTCEEE
T ss_pred HHHhhCCCCCCEEEECCC--CE-EhhheecCCCCCc
Confidence 34566677777776543 33 3333 55555543
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.09 E-value=0.4 Score=42.16 Aligned_cols=95 Identities=9% Similarity=0.087 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+.++|+|+++.. +..+.+...+.....++++|+||.... +.... .-...+++.+++.++..+++...+.......
T Consensus 103 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i- 181 (319)
T 2chq_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI- 181 (319)
T ss_dssp CEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCB-
T ss_pred ceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 568999999753 445666666655556778888886653 11111 2224799999999999999988774333221
Q ss_pred cHHHHHHHHHHHcCCCchhHH
Q 017858 78 GYEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~ 98 (365)
.++....+++.++|.+..+.
T Consensus 182 -~~~~l~~l~~~~~G~~r~~~ 201 (319)
T 2chq_A 182 -TEDGLEALIYISGGDFRKAI 201 (319)
T ss_dssp -CHHHHHHHHHTTTTCHHHHH
T ss_pred -CHHHHHHHHHHcCCCHHHHH
Confidence 23567788899999887544
No 176
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.08 E-value=0.17 Score=46.10 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=70.9
Q ss_pred cCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccc
Q 017858 254 LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIER 328 (365)
Q Consensus 254 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~ 328 (365)
+....|..+..|+.+.+ ..+ ++.+.. ..+.+|+.+.+.. .+..++... ++.+|+.+.+.++.+..
T Consensus 231 i~~~~f~~~~~L~~i~l-p~~--------v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~ 300 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAI-PKN--------VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIET 300 (379)
T ss_dssp ECTTTTTTCSSCCEEEE-CTT--------CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred EccccccCCccceEEEc-CCC--------ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccce
Confidence 44567788888988888 333 335555 5567788888864 477777665 48899999998888888
Q ss_pred ccc-ccccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 329 LWH-CVKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 329 lp~-~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
+++ .+.++.+|+.+.+..+ ++ .++. |.++.+|+
T Consensus 301 I~~~aF~~c~~L~~i~lp~~--l~-~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 301 LEPRVFMDCVKLSSVTLPTA--LK-TIQVYAFKNCKALS 336 (379)
T ss_dssp ECTTTTTTCTTCCEEECCTT--CC-EECTTTTTTCTTCC
T ss_pred ehhhhhcCCCCCCEEEcCcc--cc-EEHHHHhhCCCCCC
Confidence 854 5688899999998754 56 6765 77777765
No 177
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.68 E-value=0.18 Score=46.32 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=45.5
Q ss_pred ccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccccc
Q 017858 256 PSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLW 330 (365)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~lp 330 (365)
...|.++..|+.+.+ .+ .++.++. ..+.+|+.+.+..+ ++.+.... ++.+|+.+.+..+ +..++
T Consensus 281 ~~aF~~c~~L~~i~l-~~--------~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~ 349 (394)
T 4gt6_A 281 TGAFMNCPALQDIEF-SS--------RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP 349 (394)
T ss_dssp TTTTTTCTTCCEEEC-CT--------TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC
T ss_pred CcccccccccccccC-CC--------cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh
Confidence 334445555555555 22 2334554 44566777766543 55565444 3667777777543 55553
Q ss_pred -cccccCccCceecccccc
Q 017858 331 -HCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 331 -~~i~~l~~L~~L~l~~~~ 348 (365)
..+.++.+|+.+++.++.
T Consensus 350 ~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp GGGGTTCTTCCEEEESSCH
T ss_pred HhHhhCCCCCCEEEECCce
Confidence 345667777777776553
No 178
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.46 E-value=0.23 Score=45.56 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=54.3
Q ss_pred CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccccc-cccccCccCceecccccccccccCCC--CCCCCCC
Q 017858 289 PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIERLW-HCVKHYSKLNQIIHAACNMLTAKIPN--PTLMPRM 363 (365)
Q Consensus 289 ~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L 363 (365)
..+.+|+.+.+..+ ++.++... ++.+|+.+++.. .+..++ ..+..+.+|+.+.+..+ ++ .++. |.++.+|
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~-~I~~~aF~~C~~L 368 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LR-KIGANAFQGCINL 368 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CC-EECTTTBTTCTTC
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--cc-EehHHHhhCCCCC
Confidence 45678888888654 77777665 489999999975 477774 46788999999999765 66 6775 8888888
Q ss_pred C
Q 017858 364 K 364 (365)
Q Consensus 364 ~ 364 (365)
+
T Consensus 369 ~ 369 (394)
T 4fs7_A 369 K 369 (394)
T ss_dssp C
T ss_pred C
Confidence 6
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.15 E-value=0.17 Score=42.51 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=55.0
Q ss_pred EEEEEeCCCChH--h--HHHHHccCCCC-CCC-cEEEEEeCchh---------HHHhcCccceEEeCCCCHHHHHHHHHH
Q 017858 3 VLIVFDDVTCFS--Q--IESLIGSLDWL-TPV-SRIIITTRNKQ---------VLRNWGVRKIYEMKALEYHHAIRLFSR 67 (365)
Q Consensus 3 ~LlVlDdv~~~~--~--~~~l~~~~~~~-~~g-s~ilvTTR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L~~~ 67 (365)
-+||+||++... . .+.+...+... ..+ .++|+||+... +...+.....+++.+++.++..+++..
T Consensus 106 ~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~ 185 (242)
T 3bos_A 106 DLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQR 185 (242)
T ss_dssp SEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHH
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHH
Confidence 479999997432 1 22232221100 112 24788776432 122222225899999999999999988
Q ss_pred hhhcCCCCCccHHHHHHHHHHHcCCCchhHH
Q 017858 68 HAFKQNHPDVGYEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 98 (365)
.+....... ..+....+++.++|.+-.+.
T Consensus 186 ~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~ 214 (242)
T 3bos_A 186 RAAMRGLQL--PEDVGRFLLNRMARDLRTLF 214 (242)
T ss_dssp HHHHTTCCC--CHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCCCC--CHHHHHHHHHHccCCHHHHH
Confidence 774322211 23567788888888876554
No 180
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.70 E-value=0.39 Score=43.96 Aligned_cols=97 Identities=15% Similarity=0.310 Sum_probs=66.4
Q ss_pred cCccccCCCCCCceEEEecCccCCCccccccccCC---CCCCcccEEEEeCCCCCCCCCCC--CCCCceEEeccCCcccc
Q 017858 254 LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD---PGFAEVKYLHWYGYPLKSLPSNL--SAKKLVLVEVPDSDIER 328 (365)
Q Consensus 254 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~---~~l~~L~~L~l~~~~i~~lp~~~--~l~~L~~L~l~~~~l~~ 328 (365)
+...+|..+..|+.+.+ .+. +..+.. ..+..|+.+.+. +.+..++... ++.+|+.+.+..+ +..
T Consensus 256 i~~~aF~~c~~L~~i~l-p~~--------~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~ 324 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKM-PDS--------VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQ 324 (394)
T ss_dssp ECTTTTTTCSSCCEEEC-CTT--------CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred cccceeeecccccEEec-ccc--------cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccE
Confidence 34567888888888887 333 224444 556778888775 4577777665 4788888888654 555
Q ss_pred cc-cccccCccCceecccccccccccCCC--CCCCCCCC
Q 017858 329 LW-HCVKHYSKLNQIIHAACNMLTAKIPN--PTLMPRMK 364 (365)
Q Consensus 329 lp-~~i~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 364 (365)
+. ..+..+.+|+.+.+..+ ++ .++. |.++.+|+
T Consensus 325 I~~~aF~~C~~L~~i~ip~s--v~-~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPSS--VT-KIPESAFSNCTALN 360 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT--CC-BCCGGGGTTCTTCC
T ss_pred ehHhHhhCCCCCCEEEECcc--cC-EEhHhHhhCCCCCC
Confidence 63 45678888888888643 56 6775 77777775
No 181
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.98 E-value=1.2 Score=39.82 Aligned_cols=91 Identities=13% Similarity=0.185 Sum_probs=60.6
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+++.. +..+.+...+.+...++.+|++|.+.. +...+ .-...+++.+++.++..+.+.... . .+
T Consensus 109 ~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~ 183 (334)
T 1a5t_A 109 AKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-MS 183 (334)
T ss_dssp CEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-CC
T ss_pred cEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-CC
Confidence 457899999854 345556555554455677777776653 22222 223579999999999999988775 1 11
Q ss_pred cHHHHHHHHHHHcCCCchhHHH
Q 017858 78 GYEELSCKVMKYAQGVPLALKV 99 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~ 99 (365)
.+.+..+++.++|.|..+..
T Consensus 184 --~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 184 --QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp --HHHHHHHHHHTTTCHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHH
Confidence 24567789999999965543
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.68 E-value=1 Score=38.66 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=61.4
Q ss_pred EEEEEEeCCCCh-----------H-hHHHHHccCCC---CCCCcEEEEEeCchhHHHhc----CccceEEeCCCCH-HHH
Q 017858 2 KVLIVFDDVTCF-----------S-QIESLIGSLDW---LTPVSRIIITTRNKQVLRNW----GVRKIYEMKALEY-HHA 61 (365)
Q Consensus 2 r~LlVlDdv~~~-----------~-~~~~l~~~~~~---~~~gs~ilvTTR~~~v~~~~----~~~~~~~l~~L~~-~e~ 61 (365)
..+|++|+++.. . ..+.+...+.. .+.+..||.||......... .....+++.+++. ++.
T Consensus 125 ~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i 204 (272)
T 1d2n_A 125 LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQL 204 (272)
T ss_dssp EEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHH
T ss_pred CcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHH
Confidence 568999998643 1 12333332221 23344577788777544331 1235789999998 666
Q ss_pred HHHHHHhhhcCCCCCccHHHHHHHHHHHcCCC------chhHHHHhHhhcccCHHHHHHHHHHHhhc
Q 017858 62 IRLFSRHAFKQNHPDVGYEELSCKVMKYAQGV------PLALKVLGCFLHKREKEVWESATDKLQRI 122 (365)
Q Consensus 62 ~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~gl------Plai~~~~~~l~~~~~~~w~~~~~~l~~~ 122 (365)
..++.+.. .. ..+....|++.+.|. +-++..+-.+....+...+..+++.+.+.
T Consensus 205 ~~i~~~~~----~~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 205 LEALELLG----NF---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHHHHHT----CS---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHT
T ss_pred HHHHHhcC----CC---CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHc
Confidence 66665431 11 135567788888874 33333333222222445566666655544
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.59 E-value=1.7 Score=41.41 Aligned_cols=98 Identities=9% Similarity=0.122 Sum_probs=56.2
Q ss_pred EEEEEEeCCCCh-----HhHHHHHccCCCCCCCcEEEEEeCchh---HHHhcCccceEEeCCCCHHHHHHHHHHhhhcCC
Q 017858 2 KVLIVFDDVTCF-----SQIESLIGSLDWLTPVSRIIITTRNKQ---VLRNWGVRKIYEMKALEYHHAIRLFSRHAFKQN 73 (365)
Q Consensus 2 r~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTTR~~~---v~~~~~~~~~~~l~~L~~~e~~~L~~~~~~~~~ 73 (365)
+.+||+|+++.. ..+..+...+.. .+..||+++.... +.........+.+.+++.++..+.+...+....
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~ 226 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK 226 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 468999999743 113333332221 2233555554432 222222234789999999999999988764332
Q ss_pred CCCccHHHHHHHHHHHcCC-CchhHHHHhHh
Q 017858 74 HPDVGYEELSCKVMKYAQG-VPLALKVLGCF 103 (365)
Q Consensus 74 ~~~~~~~~~~~~i~~~c~g-lPlai~~~~~~ 103 (365)
...+. +....|++.++| ++-|+..+..+
T Consensus 227 ~~i~~--~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 227 FKLDP--NVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp CCCCT--THHHHHHHHTTTCHHHHHHHHTHH
T ss_pred CCCCH--HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 21111 346778889988 55556555443
No 184
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.39 E-value=0.93 Score=39.98 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=60.7
Q ss_pred EEEEEeCCCChH--hHHHHHccCCCC------------------CCCcEEEEEeCchhHH-Hhc--CccceEEeCCCCHH
Q 017858 3 VLIVFDDVTCFS--QIESLIGSLDWL------------------TPVSRIIITTRNKQVL-RNW--GVRKIYEMKALEYH 59 (365)
Q Consensus 3 ~LlVlDdv~~~~--~~~~l~~~~~~~------------------~~gs~ilvTTR~~~v~-~~~--~~~~~~~l~~L~~~ 59 (365)
.+|++|++.... ..+.+...+... .++.++|.||...... ... .....+.+.+++.+
T Consensus 92 ~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 171 (324)
T ss_dssp CEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHH
T ss_pred CEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHH
Confidence 478999998643 333333222111 0235677776654211 111 11247999999999
Q ss_pred HHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCchhHHHHhHhh
Q 017858 60 HAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALKVLGCFL 104 (365)
Q Consensus 60 e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 104 (365)
|...++.+.+.......+ .+....+++.++|.|..+..+...+
T Consensus 172 e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 172 ELAQGVMRDARLLGVRIT--EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHHHTTTCCCC--HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999887744332222 3667889999999998776554433
No 185
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.00 E-value=1 Score=40.35 Aligned_cols=95 Identities=6% Similarity=0.069 Sum_probs=58.6
Q ss_pred EEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCFS--QIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-++|+|++...+ ..+.+...+.....+..+|++|.... +.... .-...+++.+++.++..+.+...+.......+.
T Consensus 136 ~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 136 KCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp EEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred eEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 389999998542 23444443332234677777776542 22211 122579999999999999998876432221110
Q ss_pred HHHHHHHHHHHcCCCchhHH
Q 017858 79 YEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (365)
++.+..|++.++|.+..+.
T Consensus 216 -~~~l~~i~~~~~G~~r~a~ 234 (354)
T 1sxj_E 216 -KDILKRIAQASNGNLRVSL 234 (354)
T ss_dssp -SHHHHHHHHHHTTCHHHHH
T ss_pred -HHHHHHHHHHcCCCHHHHH
Confidence 1567788899999885543
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.25 E-value=0.77 Score=42.83 Aligned_cols=92 Identities=10% Similarity=0.099 Sum_probs=56.0
Q ss_pred EEEEEeCCCChH----hHHHHHccCCC-CCCCcEEEEEeCch---------hHHHhcCccceEEeCCCCHHHHHHHHHHh
Q 017858 3 VLIVFDDVTCFS----QIESLIGSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEMKALEYHHAIRLFSRH 68 (365)
Q Consensus 3 ~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~ilvTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L~~~~ 68 (365)
-+|++||++... ..+.+...+.. ...|..||+||... .+...+.....+.+++++.++-.+++.+.
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 479999996432 22333333211 13467799998863 22222332357899999999999999887
Q ss_pred hhcCCC-CCccHHHHHHHHHHHcCCCchhH
Q 017858 69 AFKQNH-PDVGYEELSCKVMKYAQGVPLAL 97 (365)
Q Consensus 69 ~~~~~~-~~~~~~~~~~~i~~~c~glPlai 97 (365)
+..... .++ +....|++.++|.+-.+
T Consensus 276 ~~~~~~~i~~---e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 276 LEIEHGELPE---EVLNFVAENVDDNLRRL 302 (440)
T ss_dssp HHHHTCCCCT---THHHHHHHHCCSCHHHH
T ss_pred HHHcCCCCCH---HHHHHHHHhcCCCHHHH
Confidence 742221 122 34667778888877544
No 187
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.99 E-value=2.4 Score=37.67 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=59.1
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCcc
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVG 78 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~ 78 (365)
-+|++|++... ...+.+...+.......++|++|.... +.... .-...+++.+++.++....+...+.......+
T Consensus 135 ~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~- 213 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCD- 213 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC-
T ss_pred eEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCC-
Confidence 48999998743 334444444433344567777775442 11111 11237899999999999999887643332222
Q ss_pred HHHHHHHHHHHcCCCchhHH
Q 017858 79 YEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (365)
++....|++.++|.|..+.
T Consensus 214 -~~~l~~l~~~~~G~~r~~~ 232 (353)
T 1sxj_D 214 -DGVLERILDISAGDLRRGI 232 (353)
T ss_dssp -HHHHHHHHHHTSSCHHHHH
T ss_pred -HHHHHHHHHHcCCCHHHHH
Confidence 3567889999999987643
No 188
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=85.04 E-value=3.8 Score=36.43 Aligned_cols=96 Identities=13% Similarity=-0.019 Sum_probs=63.3
Q ss_pred EEEEEEeCCCC---hHhHHHHHccCCCCCCCcEEEEEeCc-------hhHHHhc-CccceEEeCCCCHHHHHHHHHHhhh
Q 017858 2 KVLIVFDDVTC---FSQIESLIGSLDWLTPVSRIIITTRN-------KQVLRNW-GVRKIYEMKALEYHHAIRLFSRHAF 70 (365)
Q Consensus 2 r~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~ilvTTR~-------~~v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~ 70 (365)
+=++|+|++.. .+.++.+...+.+..+++.+|++|-. ..+.... .....++..+++.++....+.+.+-
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHH
Confidence 44789999865 34566666665544567777776643 2344433 2335899999999999988888764
Q ss_pred cCCCCCccHHHHHHHHHHHcCCCchhHHH
Q 017858 71 KQNHPDVGYEELSCKVMKYAQGVPLALKV 99 (365)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~c~glPlai~~ 99 (365)
.....- .++.+..+++.++|-..++..
T Consensus 157 ~~g~~i--~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 157 QLNLEL--DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HTTCEE--CHHHHHHHHHSSTTCHHHHHH
T ss_pred HcCCCC--CHHHHHHHHHHhchHHHHHHH
Confidence 333211 135678889999998876653
No 189
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.48 E-value=0.35 Score=39.74 Aligned_cols=109 Identities=6% Similarity=0.081 Sum_probs=56.4
Q ss_pred ceEEEEeeccc-cccccc--cCccccCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCC-----C
Q 017858 237 EKIEGICLDMS-KIKEIR--LNPSTFTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLK-----S 306 (365)
Q Consensus 237 ~~~~~l~l~~~-~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~-----~ 306 (365)
..++.+.+..+ .+.... .....+..-..|+.|+|++|.+.. . ....+.. ..-+.|+.|+|++|.|. .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd-~--ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD-S--EARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH-H--HHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh-H--HHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44556655543 333211 112334455678888885443210 0 0001111 22266888888888875 2
Q ss_pred CCCCC-CCCCceEEeccCC---ccc-----ccccccccCccCceecccccc
Q 017858 307 LPSNL-SAKKLVLVEVPDS---DIE-----RLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 307 lp~~~-~l~~L~~L~l~~~---~l~-----~lp~~i~~l~~L~~L~l~~~~ 348 (365)
+-..+ .-..|+.|+|++| .++ .+-..+..=+.|+.|+++.|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 22233 2456888888754 232 233344555678888887654
No 190
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=79.03 E-value=16 Score=30.61 Aligned_cols=93 Identities=11% Similarity=0.164 Sum_probs=52.6
Q ss_pred EEEEEEeCCCCh-----------------HhHHHHHccCCC--CCCCcEEEEEeCchhHHHh-c----CccceEEeCCCC
Q 017858 2 KVLIVFDDVTCF-----------------SQIESLIGSLDW--LTPVSRIIITTRNKQVLRN-W----GVRKIYEMKALE 57 (365)
Q Consensus 2 r~LlVlDdv~~~-----------------~~~~~l~~~~~~--~~~gs~ilvTTR~~~v~~~-~----~~~~~~~l~~L~ 57 (365)
..+|++|+++.. ..+..+...+.. ...+..||.||........ . .....+.++..+
T Consensus 99 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~ 178 (262)
T 2qz4_A 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178 (262)
T ss_dssp SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCC
T ss_pred CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcC
Confidence 468999999854 112333332221 1235567777765432111 1 223578899999
Q ss_pred HHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCch
Q 017858 58 YHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPL 95 (365)
Q Consensus 58 ~~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 95 (365)
.++-.+++...+..... ..........+++.+.|.+-
T Consensus 179 ~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 179 LQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp HHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCH
T ss_pred HHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCH
Confidence 99999999887643222 22222335778888888764
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.78 E-value=5.8 Score=34.02 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=51.2
Q ss_pred EEEEEeCCCCh----------------HhHHHHHccCC--CCCCCcEEEEEeCchhHHH-----hcCccceEEeCCCCHH
Q 017858 3 VLIVFDDVTCF----------------SQIESLIGSLD--WLTPVSRIIITTRNKQVLR-----NWGVRKIYEMKALEYH 59 (365)
Q Consensus 3 ~LlVlDdv~~~----------------~~~~~l~~~~~--~~~~gs~ilvTTR~~~v~~-----~~~~~~~~~l~~L~~~ 59 (365)
.+|++|+++.. ..+..+...+. ....+..||.||....... .......+.+.+.+.+
T Consensus 112 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~ 191 (285)
T 3h4m_A 112 SIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEK 191 (285)
T ss_dssp EEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHH
T ss_pred eEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHH
Confidence 68999999643 11223332221 1234567888887553221 1122347899999999
Q ss_pred HHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCC
Q 017858 60 HAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGV 93 (365)
Q Consensus 60 e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 93 (365)
+-.+++...+.......+ .....+++.+.|.
T Consensus 192 ~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~ 222 (285)
T 3h4m_A 192 GRLEILKIHTRKMNLAED---VNLEEIAKMTEGC 222 (285)
T ss_dssp HHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCC
Confidence 999999888743322111 1245666777764
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=78.63 E-value=5.2 Score=34.78 Aligned_cols=67 Identities=9% Similarity=0.029 Sum_probs=45.2
Q ss_pred EEEEEeCCC-----------ChHhHHHHHccCCCCCCCcEEEEEeCchh----------HHHhcCccceEEeCCCCHHHH
Q 017858 3 VLIVFDDVT-----------CFSQIESLIGSLDWLTPVSRIIITTRNKQ----------VLRNWGVRKIYEMKALEYHHA 61 (365)
Q Consensus 3 ~LlVlDdv~-----------~~~~~~~l~~~~~~~~~gs~ilvTTR~~~----------v~~~~~~~~~~~l~~L~~~e~ 61 (365)
.+|++|+++ ..+....+...+.....+..||.||.... +...+ ...+.+++++.++-
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEEL 209 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHH
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHH
Confidence 378999998 33445555555544455677888886432 22222 25799999999999
Q ss_pred HHHHHHhhhc
Q 017858 62 IRLFSRHAFK 71 (365)
Q Consensus 62 ~~L~~~~~~~ 71 (365)
..++...+..
T Consensus 210 ~~il~~~l~~ 219 (309)
T 3syl_A 210 FEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887743
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.73 E-value=24 Score=30.90 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=53.1
Q ss_pred EEEEEEeCCCCh-------------HhHHHHHccCC---CCCCCcEEEEEeCchhHHHh---cCccceEEeCCCCHHHHH
Q 017858 2 KVLIVFDDVTCF-------------SQIESLIGSLD---WLTPVSRIIITTRNKQVLRN---WGVRKIYEMKALEYHHAI 62 (365)
Q Consensus 2 r~LlVlDdv~~~-------------~~~~~l~~~~~---~~~~gs~ilvTTR~~~v~~~---~~~~~~~~l~~L~~~e~~ 62 (365)
..+|++|+++.. .....+...+. ....+..||.||........ -.....+.+...+.++-.
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 185 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARA 185 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHH
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHH
Confidence 468999999754 11223322221 12345556666654421110 033457889999999999
Q ss_pred HHHHHhhhcCCCCCccHHHHHHHHHHHcCCCc
Q 017858 63 RLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 63 ~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (365)
+++...+........ ......|++.+.|..
T Consensus 186 ~il~~~l~~~~~~l~--~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 186 AMFKLHLGTTQNSLT--EADFRELGRKTDGYS 215 (322)
T ss_dssp HHHHHHHTTCCBCCC--HHHHHHHHHTCTTCC
T ss_pred HHHHHHHhcCCCCCC--HHHHHHHHHHcCCCC
Confidence 999887633222112 255678888888874
No 194
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=74.72 E-value=21 Score=31.19 Aligned_cols=91 Identities=10% Similarity=0.013 Sum_probs=53.8
Q ss_pred EEEEEEeCCCChH-------------hHHHHHccC---CCCCCCcEEEEEeCchhHHHh---cCccceEEeCCCCHHHHH
Q 017858 2 KVLIVFDDVTCFS-------------QIESLIGSL---DWLTPVSRIIITTRNKQVLRN---WGVRKIYEMKALEYHHAI 62 (365)
Q Consensus 2 r~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~gs~ilvTTR~~~v~~~---~~~~~~~~l~~L~~~e~~ 62 (365)
..+|++|+++... ....+...+ .....+..||.||........ -.....+.+...+.++-.
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~ 190 (322)
T 3eie_A 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190 (322)
T ss_dssp SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHH
T ss_pred CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHH
Confidence 3689999997431 123333222 222345666667766432110 022357889999999999
Q ss_pred HHHHHhhhcCCCCCccHHHHHHHHHHHcCCCc
Q 017858 63 RLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 63 ~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (365)
+++...+........ ......|++.+.|..
T Consensus 191 ~il~~~~~~~~~~~~--~~~l~~la~~t~g~s 220 (322)
T 3eie_A 191 TMFEINVGDTPCVLT--KEDYRTLGAMTEGYS 220 (322)
T ss_dssp HHHHHHHTTCCCCCC--HHHHHHHHHTTTTCC
T ss_pred HHHHHHhccCCCCCC--HHHHHHHHHHcCCCC
Confidence 999988743322212 245677888888753
No 195
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.13 E-value=14 Score=32.88 Aligned_cols=89 Identities=10% Similarity=0.061 Sum_probs=53.7
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCc-----------------hhHHHhcCccceEEeCCCCHHHHHH
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRN-----------------KQVLRNWGVRKIYEMKALEYHHAIR 63 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-----------------~~v~~~~~~~~~~~l~~L~~~e~~~ 63 (365)
.+|++|++... +..+.+...+...... .++++|.. +.+...+ ..+.+.+++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHH
Confidence 48999999854 3455555555433333 34444431 1222222 358999999999999
Q ss_pred HHHHhhhcCCCCCccHHHHHHHHHHHcC-CCchhH
Q 017858 64 LFSRHAFKQNHPDVGYEELSCKVMKYAQ-GVPLAL 97 (365)
Q Consensus 64 L~~~~~~~~~~~~~~~~~~~~~i~~~c~-glPlai 97 (365)
++...+....... ..+....|++.+. |.|-.+
T Consensus 267 il~~~~~~~~~~~--~~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 267 ILRIRCEEEDVEM--SEDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp HHHHHHHHTTCCB--CHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHhcCCCHHHH
Confidence 9998774432221 2356777888886 666443
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=72.70 E-value=31 Score=30.66 Aligned_cols=89 Identities=10% Similarity=0.032 Sum_probs=52.4
Q ss_pred EEEEEEeCCCChH-------------hHHHHHccC---CCCCCCcEEEEEeCchh-----HHHhcCccceEEeCCCCHHH
Q 017858 2 KVLIVFDDVTCFS-------------QIESLIGSL---DWLTPVSRIIITTRNKQ-----VLRNWGVRKIYEMKALEYHH 60 (365)
Q Consensus 2 r~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~gs~ilvTTR~~~-----v~~~~~~~~~~~l~~L~~~e 60 (365)
..+|++|+++... ....+...+ .....+..||.||.... +.. .....+.+...+.++
T Consensus 144 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 221 (355)
T ss_dssp SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHH
Confidence 4689999998431 122332222 11234556666776542 222 334578899999999
Q ss_pred HHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCc
Q 017858 61 AIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 61 ~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (365)
-.+++...+........ ......|++.+.|..
T Consensus 222 r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~s 253 (355)
T 2qp9_X 222 RTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYS 253 (355)
T ss_dssp HHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCC
Confidence 99999887743322112 245677888888853
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=70.65 E-value=12 Score=32.71 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=51.8
Q ss_pred EEEEEeCCCChH----hHHHHHccCCC-CCCCcEEEEEeCchh---------HHHhcCccceEEeCCCCHHHHHHHHHHh
Q 017858 3 VLIVFDDVTCFS----QIESLIGSLDW-LTPVSRIIITTRNKQ---------VLRNWGVRKIYEMKALEYHHAIRLFSRH 68 (365)
Q Consensus 3 ~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L~~~~ 68 (365)
-+|++|++.... ..+.+...+.. ...|..||+||.... +...+.....+++.+ +.++-.+++...
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHH
Confidence 479999996432 12233222210 123557888886432 222222235789999 999999999988
Q ss_pred hhcCCCCCccHHHHHHHHHHHcCCCch
Q 017858 69 AFKQNHPDVGYEELSCKVMKYAQGVPL 95 (365)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~~~c~glPl 95 (365)
+.......+ .+....|++.+ |..-
T Consensus 179 ~~~~~~~l~--~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 179 LKEFNLELR--KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHTTCCCC--HHHHHHHHHHC-SSHH
T ss_pred HHhcCCCCC--HHHHHHHHHhC-CCHH
Confidence 743322222 35567777777 5543
No 198
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=69.89 E-value=24 Score=31.47 Aligned_cols=97 Identities=12% Similarity=0.059 Sum_probs=54.4
Q ss_pred EEEEEEeCCCCh-------------HhHHHHHccCCC----CCCCcEEEEEeCchhHH-Hhc--CccceEEeCCCCHHHH
Q 017858 2 KVLIVFDDVTCF-------------SQIESLIGSLDW----LTPVSRIIITTRNKQVL-RNW--GVRKIYEMKALEYHHA 61 (365)
Q Consensus 2 r~LlVlDdv~~~-------------~~~~~l~~~~~~----~~~gs~ilvTTR~~~v~-~~~--~~~~~~~l~~L~~~e~ 61 (365)
..+|++|+++.. .....+...+.. ...+..||.||...... ... .....+.+...+.++-
T Consensus 177 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 177 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASAR 256 (357)
T ss_dssp SEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHH
T ss_pred CeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHH
Confidence 468999999532 113333332221 12345566677554211 111 2234788999999999
Q ss_pred HHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCc-hhHHHH
Q 017858 62 IRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP-LALKVL 100 (365)
Q Consensus 62 ~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~ 100 (365)
.+++...+........ ......|++.+.|+. -+|..+
T Consensus 257 ~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 257 KQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp HHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHHHHHHH
Confidence 9998877633222111 256778888888854 444443
No 199
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=69.06 E-value=14 Score=32.28 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=51.5
Q ss_pred EEEEEEeCCCChH---hHHHHHccCCCCCCCcEEEEEeCchh-----HHHhcCccceEEeCCCCHHHHHHHH-------H
Q 017858 2 KVLIVFDDVTCFS---QIESLIGSLDWLTPVSRIIITTRNKQ-----VLRNWGVRKIYEMKALEYHHAIRLF-------S 66 (365)
Q Consensus 2 r~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~ilvTTR~~~-----v~~~~~~~~~~~l~~L~~~e~~~L~-------~ 66 (365)
+-+|++|+++... ..+.+...+.....+.++|+||.... +... ...+++++++.++-.+++ .
T Consensus 106 ~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~l~ 182 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRVITFGQPTDEDKIEMMKQMIRRLT 182 (324)
T ss_dssp EEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 5689999999654 34444443332234567888887653 1111 147999999988843332 2
Q ss_pred HhhhcCCCCCccHHHHHHHHHHHcCCCchh
Q 017858 67 RHAFKQNHPDVGYEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~i~~~c~glPla 96 (365)
..+.......++ .+....|++.++|-+..
T Consensus 183 ~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 183 EICKHEGIAIAD-MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHHHHTCCBSC-HHHHHHHHHHTCSCTTH
T ss_pred HHHHHcCCCCCc-HHHHHHHHHhCCCCHHH
Confidence 222211111111 25567788888776653
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=69.05 E-value=39 Score=31.17 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=54.5
Q ss_pred EEEEEEeCCCCh-------------HhHHHHHccCCC---CCCCcEEEEEeCchhHHHh---cCccceEEeCCCCHHHHH
Q 017858 2 KVLIVFDDVTCF-------------SQIESLIGSLDW---LTPVSRIIITTRNKQVLRN---WGVRKIYEMKALEYHHAI 62 (365)
Q Consensus 2 r~LlVlDdv~~~-------------~~~~~l~~~~~~---~~~gs~ilvTTR~~~v~~~---~~~~~~~~l~~L~~~e~~ 62 (365)
..+|++|+++.. .....+...+.. ...+..||.||........ -.....+.+...+.++-.
T Consensus 228 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 307 (444)
T 2zan_A 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARA 307 (444)
T ss_dssp SEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHH
T ss_pred CeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHH
Confidence 468999999854 123444444432 2345667767765422111 023357888889999999
Q ss_pred HHHHHhhhcCCCCCccHHHHHHHHHHHcCCCc
Q 017858 63 RLFSRHAFKQNHPDVGYEELSCKVMKYAQGVP 94 (365)
Q Consensus 63 ~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (365)
.+|...+........ ......|++.+.|..
T Consensus 308 ~il~~~l~~~~~~l~--~~~l~~la~~t~G~s 337 (444)
T 2zan_A 308 AMFRLHLGSTQNSLT--EADFQELGRKTDGYS 337 (444)
T ss_dssp HHHHHHHTTSCEECC--HHHHHHHHHHTTTCC
T ss_pred HHHHHHHhcCCCCCC--HHHHHHHHHHcCCCC
Confidence 999887633221111 245677888888864
No 201
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=66.44 E-value=1.5 Score=35.98 Aligned_cols=88 Identities=10% Similarity=0.071 Sum_probs=56.5
Q ss_pred cCCCCCCceEEEecCccCCCccccccccCC--CCCCcccEEEEeCCCCCC-----CCCCCC-CCCceEEeccCCccc---
Q 017858 259 FTKMPKLRFLKFYRSSVNGKNKCKISYLQD--PGFAEVKYLHWYGYPLKS-----LPSNLS-AKKLVLVEVPDSDIE--- 327 (365)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~~~~~l~~lp~--~~l~~L~~L~l~~~~i~~-----lp~~~~-l~~L~~L~l~~~~l~--- 327 (365)
+..-+.|+.|+|+.++..|.. ....+-. ..-+.|+.|+|++|.+.. +-..+. -+.|+.|+|++|.|+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~--ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKE--RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHH--HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHH--HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 445678999999543311110 1112222 444779999999999862 222222 568999999999874
Q ss_pred --ccccccccCccCceecccccc
Q 017858 328 --RLWHCVKHYSKLNQIIHAACN 348 (365)
Q Consensus 328 --~lp~~i~~l~~L~~L~l~~~~ 348 (365)
.+-+.+..-+.|++|++++|.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHHhhCCceeEEECCCCc
Confidence 234455556789999998654
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=66.27 E-value=43 Score=30.08 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=41.7
Q ss_pred CcEEEEEeCchhHHH-hc--CccceEEeCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCch-hHHH
Q 017858 29 VSRIIITTRNKQVLR-NW--GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPL-ALKV 99 (365)
Q Consensus 29 gs~ilvTTR~~~v~~-~~--~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~ 99 (365)
+..||.||....... .. .....+.+...+.++-.+++...+........ ......|++.+.|..- +|..
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHH
Confidence 455666665532111 11 22346889999999999999887743322222 2466788888888654 4433
No 203
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=65.62 E-value=21 Score=31.25 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=56.0
Q ss_pred EEEEEeCCCCh--HhHHHHHccCCCCC------------------CCcEEEEEeCchhH-HHhc--CccceEEeCCCCHH
Q 017858 3 VLIVFDDVTCF--SQIESLIGSLDWLT------------------PVSRIIITTRNKQV-LRNW--GVRKIYEMKALEYH 59 (365)
Q Consensus 3 ~LlVlDdv~~~--~~~~~l~~~~~~~~------------------~gs~ilvTTR~~~v-~~~~--~~~~~~~l~~L~~~ 59 (365)
.+|++|++... +....+...+.... ++..+|.||..... .... .....+.+.+++.+
T Consensus 108 ~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~ 187 (338)
T 3pfi_A 108 DILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDS 187 (338)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHH
T ss_pred CEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHH
Confidence 47899999854 33334433322111 12456666655322 1111 22357999999999
Q ss_pred HHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCchhHH
Q 017858 60 HAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 60 e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 98 (365)
+...++.+.+..... .-..+....|++.++|.|-.+.
T Consensus 188 e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 188 ELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp HHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHH
T ss_pred HHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHH
Confidence 999999887743322 1123567788888999985544
No 204
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=60.55 E-value=24 Score=32.70 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=53.9
Q ss_pred EEEEEEeCCCChH--hHHHHHccCCCCCCCcEEEE-EeCchh--HHH-hcCccceEEeCCCCHHHHHHHHHHhhhcCC--
Q 017858 2 KVLIVFDDVTCFS--QIESLIGSLDWLTPVSRIII-TTRNKQ--VLR-NWGVRKIYEMKALEYHHAIRLFSRHAFKQN-- 73 (365)
Q Consensus 2 r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilv-TTR~~~--v~~-~~~~~~~~~l~~L~~~e~~~L~~~~~~~~~-- 73 (365)
+.+|++|++.... ..+.+...+.. + ...+|. ||.+.. +.. ...-...+.+.+++.++...++.+.+....
T Consensus 107 ~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~ 184 (447)
T 3pvs_A 107 RTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRG 184 (447)
T ss_dssp CEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTS
T ss_pred CcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhh
Confidence 5689999998543 34444444432 2 233333 555542 111 112234789999999999999988764311
Q ss_pred ---CCCccHHHHHHHHHHHcCCCchhHH
Q 017858 74 ---HPDVGYEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 74 ---~~~~~~~~~~~~i~~~c~glPlai~ 98 (365)
....-..+....+++.++|.+-.+.
T Consensus 185 ~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 185 YGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp STTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred hccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 1111123566778888888875443
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.94 E-value=32 Score=30.22 Aligned_cols=93 Identities=10% Similarity=0.107 Sum_probs=54.7
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCchh-HHHhc-CccceEEeCCCCHHHHHHHHHHhhhcCCCCCc
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEMKALEYHHAIRLFSRHAFKQNHPDV 77 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~ 77 (365)
+-++|+|+++.. +..+.+...+......+++|++|.... +.... .-...+++.+++.++..+.+...+-.....-+
T Consensus 111 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~ 190 (340)
T 1sxj_C 111 FKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS 190 (340)
T ss_dssp CEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 357899998643 333334333322234566777765442 11111 11247899999999998888876632222111
Q ss_pred cHHHHHHHHHHHcCCCchh
Q 017858 78 GYEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 78 ~~~~~~~~i~~~c~glPla 96 (365)
....+.|++.++|-+--
T Consensus 191 --~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 191 --PNAEKALIELSNGDMRR 207 (340)
T ss_dssp --HHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHHcCCCHHH
Confidence 25577888889988753
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=56.27 E-value=11 Score=32.93 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=45.9
Q ss_pred EEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCch-hHHHhcCccceEEeCCCCHHHHHHHHHHhh
Q 017858 2 KVLIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK-QVLRNWGVRKIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 2 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~l~~L~~~e~~~L~~~~~ 69 (365)
+-++|+|+++.. +..+.+...+-+..+.+.+|++|.+. .+...+..- .+++.++++++..+.+.+..
T Consensus 83 ~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 83 RKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred ceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 357899999853 44566665554445677777776544 343333333 89999999999999998876
No 207
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=50.77 E-value=53 Score=30.34 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=52.7
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe---------Cc----h-----hHHHhcCccceEEeCCCCHHHHHH
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITT---------RN----K-----QVLRNWGVRKIYEMKALEYHHAIR 63 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTT---------R~----~-----~v~~~~~~~~~~~l~~L~~~e~~~ 63 (365)
++++|++... +..+.+...+...... .+|+.| .+ . .+...+ ..+++.+++.++..+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMKQ 373 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHHH
Confidence 7899999844 4567776666543334 344344 11 1 122222 357999999999999
Q ss_pred HHHHhhhcCCCCCccHHHHHHHHHHHc-CCCchhH
Q 017858 64 LFSRHAFKQNHPDVGYEELSCKVMKYA-QGVPLAL 97 (365)
Q Consensus 64 L~~~~~~~~~~~~~~~~~~~~~i~~~c-~glPlai 97 (365)
.+...+-...... ..+.+..|++.+ +|-|...
T Consensus 374 iL~~~~~~~~~~~--~~~~~~~i~~~a~~g~~r~a 406 (456)
T 2c9o_A 374 IIKIRAQTEGINI--SEEALNHLGEIGTKTTLRYS 406 (456)
T ss_dssp HHHHHHHHHTCCB--CHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHhCCCC--CHHHHHHHHHHccCCCHHHH
Confidence 9988763222111 124566777777 6777543
No 208
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=47.93 E-value=26 Score=31.78 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=27.8
Q ss_pred EEEEeCCCC---hHhHHHHHccCCCCCCCcEEEEEeCchhHHHhcCccceEEe
Q 017858 4 LIVFDDVTC---FSQIESLIGSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEM 53 (365)
Q Consensus 4 LlVlDdv~~---~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~l 53 (365)
+||||++.. ....+.+...+..-..|..||++|-+..++.. ++..+.+
T Consensus 318 ~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 318 SVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 789999973 33333333333221246778888888887754 3344444
No 209
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=43.75 E-value=1.5e+02 Score=25.04 Aligned_cols=67 Identities=21% Similarity=0.140 Sum_probs=41.0
Q ss_pred CCcEEEEEeCchh-----HHHhcCccceEEeCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCch-hHH
Q 017858 28 PVSRIIITTRNKQ-----VLRNWGVRKIYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPL-ALK 98 (365)
Q Consensus 28 ~gs~ilvTTR~~~-----v~~~~~~~~~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~ 98 (365)
.+..||.||.... +... ....+.+...+.++-..++...+........ ......+++.+.|.+- ++.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHH
Confidence 3456777777642 2222 2346788888888888888776633222111 2456778888988875 443
No 210
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=42.88 E-value=16 Score=29.59 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=21.9
Q ss_pred EEEEeCCCCh-----HhHHHHHccCCCCCCCcEEEEEeCchh
Q 017858 4 LIVFDDVTCF-----SQIESLIGSLDWLTPVSRIIITTRNKQ 40 (365)
Q Consensus 4 LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTTR~~~ 40 (365)
|||||.+-.. -..+.+...+.....+..||+|+|...
T Consensus 123 lvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 123 MVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp EEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred EEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 7999998321 112233333322335667999999974
No 211
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=42.77 E-value=37 Score=29.82 Aligned_cols=67 Identities=7% Similarity=0.037 Sum_probs=38.1
Q ss_pred CEEEEEEeCCCCh---HhHHHHHccC-CCCCCCcEEEEEeCchhH---------HHhcCccceEEeCCCCHHHHHHHHHH
Q 017858 1 MKVLIVFDDVTCF---SQIESLIGSL-DWLTPVSRIIITTRNKQV---------LRNWGVRKIYEMKALEYHHAIRLFSR 67 (365)
Q Consensus 1 kr~LlVlDdv~~~---~~~~~l~~~~-~~~~~gs~ilvTTR~~~v---------~~~~~~~~~~~l~~L~~~e~~~L~~~ 67 (365)
++++++||.++.. +.+..+.... ...++. .||.++..... ...++ ...+.+.+++.+|-.+++.+
T Consensus 132 ~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~-~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~ 209 (318)
T 3te6_A 132 RKTLILIQNPENLLSEKILQYFEKWISSKNSKL-SIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIIT 209 (318)
T ss_dssp CEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCE-EEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHH
T ss_pred CceEEEEecHHHhhcchHHHHHHhcccccCCcE-EEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHH
Confidence 3689999999864 2233333210 112222 34444433211 11222 14689999999999999988
Q ss_pred hh
Q 017858 68 HA 69 (365)
Q Consensus 68 ~~ 69 (365)
++
T Consensus 210 Rl 211 (318)
T 3te6_A 210 RL 211 (318)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 212
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=35.96 E-value=1e+02 Score=26.34 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=51.8
Q ss_pred EEEEEEeCCCChH----------------hHHHHHccCCC--CCCCcEEEEEeCchhHHHh--c---CccceEEeCCCCH
Q 017858 2 KVLIVFDDVTCFS----------------QIESLIGSLDW--LTPVSRIIITTRNKQVLRN--W---GVRKIYEMKALEY 58 (365)
Q Consensus 2 r~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~gs~ilvTTR~~~v~~~--~---~~~~~~~l~~L~~ 58 (365)
..+|++|+++... ....+...+.. ...+..||.||........ . .....+.+...+.
T Consensus 109 p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 188 (301)
T 3cf0_A 109 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188 (301)
T ss_dssp SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCH
T ss_pred CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCH
Confidence 3689999997421 12333332211 2345677777766532211 1 2345789999999
Q ss_pred HHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHcCCCchh
Q 017858 59 HHAIRLFSRHAFKQNH-PDVGYEELSCKVMKYAQGVPLA 96 (365)
Q Consensus 59 ~e~~~L~~~~~~~~~~-~~~~~~~~~~~i~~~c~glPla 96 (365)
++-.+++...+..... .... ...+++.+.|.|-+
T Consensus 189 ~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 189 KSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp HHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 9988888777633221 1222 23556677777743
No 213
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=35.15 E-value=9.1 Score=29.93 Aligned_cols=62 Identities=10% Similarity=0.035 Sum_probs=34.5
Q ss_pred EEEEEEeCCCChH---------h-HHHHHccCCCCCCCcEEEEEeCchhHHHhc-------CccceEEeCCCCHHHHHHH
Q 017858 2 KVLIVFDDVTCFS---------Q-IESLIGSLDWLTPVSRIIITTRNKQVLRNW-------GVRKIYEMKALEYHHAIRL 64 (365)
Q Consensus 2 r~LlVlDdv~~~~---------~-~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~-------~~~~~~~l~~L~~~e~~~L 64 (365)
+.+||+||++... . .+.+...+. ..+..+|.||......... .--..+.+.+++.++..++
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHH
Confidence 4689999997542 1 222222221 2244577777665432211 1112688999998887665
Q ss_pred H
Q 017858 65 F 65 (365)
Q Consensus 65 ~ 65 (365)
+
T Consensus 194 l 194 (195)
T 1jbk_A 194 L 194 (195)
T ss_dssp C
T ss_pred h
Confidence 3
No 214
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=33.23 E-value=21 Score=18.00 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=12.9
Q ss_pred CCCchhHHHHhHhhcc
Q 017858 91 QGVPLALKVLGCFLHK 106 (365)
Q Consensus 91 ~glPlai~~~~~~l~~ 106 (365)
.-+|+|+.++|+.+..
T Consensus 9 rklplavav~agv~~a 24 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCTHHHHHHHHTTCC
T ss_pred ccCchHHHHHHHHhHh
Confidence 4689999999987754
No 215
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=32.50 E-value=2.5e+02 Score=24.34 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=35.1
Q ss_pred eEEeCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHcCCCchhHH
Q 017858 50 IYEMKALEYHHAIRLFSRHAFKQNHPDVGYEELSCKVMKYAQGVPLALK 98 (365)
Q Consensus 50 ~~~l~~L~~~e~~~L~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 98 (365)
...+++.+.++-.+++.+.+...... ...+.+..|++.++|.|-.+.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHH
Confidence 58999999999999999876332222 223668899999999996543
No 216
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=27.58 E-value=43 Score=16.75 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=12.6
Q ss_pred CCCCCCCcEEEEEeCch
Q 017858 23 LDWLTPVSRIIITTRNK 39 (365)
Q Consensus 23 ~~~~~~gs~ilvTTR~~ 39 (365)
+|....|+.++|||...
T Consensus 4 lPa~eeGaT~lVtTKT~ 20 (26)
T 2gkw_B 4 VPATELGSTELVTTKTA 20 (26)
T ss_pred ccccccCceEEEEeccC
Confidence 44556789999999754
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=26.22 E-value=92 Score=30.88 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=37.9
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCC-----------CCCcEEEEEeCc-----hhH----HHhc------CccceEEeCC
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWL-----------TPVSRIIITTRN-----KQV----LRNW------GVRKIYEMKA 55 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~ilvTTR~-----~~v----~~~~------~~~~~~~l~~ 55 (365)
.|+||++... +....+...+..+ ..+.+||+||.. ..+ ...+ .....+.+.+
T Consensus 582 vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~ 661 (758)
T 3pxi_A 582 VVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHS 661 (758)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC-
T ss_pred EEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCC
Confidence 6899999743 3344444433221 135688889873 111 1111 1224889999
Q ss_pred CCHHHHHHHHHHhh
Q 017858 56 LEYHHAIRLFSRHA 69 (365)
Q Consensus 56 L~~~e~~~L~~~~~ 69 (365)
++.++-..++...+
T Consensus 662 l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 662 LEKKHLTEIVSLMS 675 (758)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888887654
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=24.03 E-value=2.6e+02 Score=23.38 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=16.9
Q ss_pred ceEEeCCCCHHHHHHHHHHh
Q 017858 49 KIYEMKALEYHHAIRLFSRH 68 (365)
Q Consensus 49 ~~~~l~~L~~~e~~~L~~~~ 68 (365)
..+.+.+++.++..+++...
T Consensus 195 ~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 195 IRVELTALSAADFERILTEP 214 (310)
T ss_dssp EEEECCCCCHHHHHHHHHSS
T ss_pred ceEEcCCcCHHHHHHHHHhh
Confidence 46999999999999888753
No 219
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=22.91 E-value=1.2e+02 Score=22.16 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=15.9
Q ss_pred ceEEeCCCCHHHHHHHHHHhh
Q 017858 49 KIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 49 ~~~~l~~L~~~e~~~L~~~~~ 69 (365)
..|-.+|++.++-...+.+..
T Consensus 103 ~~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 103 SGYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp SEEEETTSCTTHHHHHHHHHT
T ss_pred cEEEecCCCHHHHHHHHHHHH
Confidence 467788898888777776665
No 220
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=22.11 E-value=64 Score=24.42 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=18.4
Q ss_pred EEEEeCCCChH--hHHHHHccCCC-CCCCc-EEEEEeCch
Q 017858 4 LIVFDDVTCFS--QIESLIGSLDW-LTPVS-RIIITTRNK 39 (365)
Q Consensus 4 LlVlDdv~~~~--~~~~l~~~~~~-~~~gs-~ilvTTR~~ 39 (365)
+||+||+.... .-+.+...+.. ...|. +||+||+..
T Consensus 86 lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 86 YLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp EEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred EEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 78999997532 12222222110 01233 488898853
No 221
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=21.09 E-value=28 Score=27.14 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=20.0
Q ss_pred EEEEEeCCCC--hHhHH--HHHccCCC-CCCCcEEEEEeCch
Q 017858 3 VLIVFDDVTC--FSQIE--SLIGSLDW-LTPVSRIIITTRNK 39 (365)
Q Consensus 3 ~LlVlDdv~~--~~~~~--~l~~~~~~-~~~gs~ilvTTR~~ 39 (365)
-+||||+++. .+.|. .+...+.. ...|..+|+||...
T Consensus 102 ~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 102 PVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp SEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3799999973 22222 22221111 12466788888654
No 222
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=20.53 E-value=1.4e+02 Score=25.30 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=14.0
Q ss_pred ceEEeCCCCHHHHHHHHHHhh
Q 017858 49 KIYEMKALEYHHAIRLFSRHA 69 (365)
Q Consensus 49 ~~~~l~~L~~~e~~~L~~~~~ 69 (365)
..+.+.+++.++-..++....
T Consensus 209 ~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 209 EIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp EEEECCCCCHHHHHHHHHHHT
T ss_pred eEEEeCCCCHHHHHHHHHHHH
Confidence 356677777777777666543
No 223
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=20.41 E-value=54 Score=24.51 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=22.0
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCch
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWLTPVSRIIITTRNK 39 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~ 39 (365)
.|++|+++.. +....+...+.....+.+||.||...
T Consensus 79 ~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 79 TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp CEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred EEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 5899999854 33444544443334456788888654
No 224
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=20.34 E-value=1.4e+02 Score=24.63 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=32.2
Q ss_pred EEEEeCCCCh--HhHHHHHccCCCC-----------CCCcEEEEEeCchh--H----------HHhcCccceEEeCCCCH
Q 017858 4 LIVFDDVTCF--SQIESLIGSLDWL-----------TPVSRIIITTRNKQ--V----------LRNWGVRKIYEMKALEY 58 (365)
Q Consensus 4 LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~ilvTTR~~~--v----------~~~~~~~~~~~l~~L~~ 58 (365)
+|+||++... +....+...+..+ ..+.+||.||.... . ...+. ...+.+.+|++
T Consensus 103 ~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~ 181 (265)
T 2bjv_A 103 TLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPPLRE 181 (265)
T ss_dssp EEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCCGGG
T ss_pred EEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCChhh
Confidence 7899999854 2333343332211 13467888887631 1 11111 12578888876
Q ss_pred --HHHHHHH
Q 017858 59 --HHAIRLF 65 (365)
Q Consensus 59 --~e~~~L~ 65 (365)
+|-..++
T Consensus 182 R~~di~~l~ 190 (265)
T 2bjv_A 182 RESDIMLMA 190 (265)
T ss_dssp CHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 4544443
No 225
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=20.19 E-value=2.5e+02 Score=20.32 Aligned_cols=65 Identities=6% Similarity=0.010 Sum_probs=35.4
Q ss_pred EEEEeCCCC----hHhHHHHHccCCCCCCCcEEEEEeCchhHH---Hhc-CccceEEeCCCCHHHHHHHHHHhhhcC
Q 017858 4 LIVFDDVTC----FSQIESLIGSLDWLTPVSRIIITTRNKQVL---RNW-GVRKIYEMKALEYHHAIRLFSRHAFKQ 72 (365)
Q Consensus 4 LlVlDdv~~----~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~---~~~-~~~~~~~l~~L~~~e~~~L~~~~~~~~ 72 (365)
++|+|---. .+....+... .+...||+.|-..... ... .....|-.+|++.++-...+.+..-+.
T Consensus 64 lii~d~~l~~~~g~~~~~~l~~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 64 VALLDYRMPGMDGAQVAAAVRSY----ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp EEEEETTCSSSCHHHHHHHHHHT----TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc----CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 567774432 1223344332 3455566655443221 111 223578889999999888887776443
Done!