Query 017861
Match_columns 365
No_of_seqs 168 out of 1517
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:04:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 2E-64 4.4E-69 477.1 33.6 297 36-355 1-312 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.3E-63 5E-68 461.4 31.0 306 31-356 7-329 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 7.5E-60 1.6E-64 453.4 33.9 302 34-353 11-334 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 1E-59 2.2E-64 447.7 32.6 295 38-350 1-316 (317)
5 PRK10625 tas putative aldo-ket 100.0 3.6E-59 7.9E-64 449.1 33.5 297 36-352 1-339 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 2.1E-59 4.5E-64 427.4 27.5 260 36-355 3-267 (280)
7 PLN02587 L-galactose dehydroge 100.0 2E-57 4.4E-62 431.5 31.6 288 38-353 1-301 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 1.6E-54 3.5E-59 406.3 31.3 277 38-350 1-285 (285)
9 PRK10376 putative oxidoreducta 100.0 8E-54 1.7E-58 402.3 30.4 264 39-353 10-289 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.3E-53 2.9E-58 399.7 26.9 274 50-351 1-282 (283)
11 KOG1577 Aldo/keto reductase fa 100.0 1.2E-53 2.7E-58 389.4 24.4 262 38-355 6-288 (300)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 6.1E-53 1.3E-57 391.8 28.9 249 46-354 1-254 (267)
13 PRK14863 bifunctional regulato 100.0 5.7E-53 1.2E-57 396.1 24.8 271 45-348 2-278 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 4E-51 8.7E-56 380.9 28.5 256 39-356 7-266 (275)
15 COG4989 Predicted oxidoreducta 100.0 7.1E-52 1.5E-56 362.4 20.9 278 36-352 1-293 (298)
16 KOG1576 Predicted oxidoreducta 100.0 1.2E-49 2.6E-54 350.8 22.2 276 35-343 21-312 (342)
17 COG1453 Predicted oxidoreducta 100.0 1.6E-47 3.4E-52 352.7 23.7 279 36-361 1-294 (391)
18 KOG3023 Glutamate-cysteine lig 98.0 1.5E-05 3.3E-10 70.6 6.4 72 175-251 156-227 (285)
19 PRK13796 GTPase YqeH; Provisio 90.2 4.3 9.2E-05 39.5 11.8 141 49-206 34-179 (365)
20 cd03319 L-Ala-DL-Glu_epimerase 89.9 11 0.00023 35.8 14.1 156 74-256 135-291 (316)
21 cd03315 MLE_like Muconate lact 87.5 21 0.00047 32.7 14.1 157 74-256 86-243 (265)
22 PF00682 HMGL-like: HMGL-like 86.4 17 0.00038 32.6 12.6 164 72-256 11-195 (237)
23 PRK07535 methyltetrahydrofolat 85.0 23 0.00049 32.8 12.7 135 142-305 22-157 (261)
24 PRK00164 moaA molybdenum cofac 83.8 34 0.00073 32.6 13.8 158 70-248 47-227 (331)
25 COG1748 LYS9 Saccharopine dehy 82.6 10 0.00022 37.1 9.6 75 75-168 79-153 (389)
26 cd03316 MR_like Mandelate race 82.4 33 0.00071 33.0 13.3 158 74-252 140-299 (357)
27 PF07021 MetW: Methionine bios 81.0 5.6 0.00012 34.9 6.5 106 149-257 62-172 (193)
28 KOG0259 Tyrosine aminotransfer 79.5 65 0.0014 31.5 14.5 179 75-266 81-282 (447)
29 TIGR03597 GTPase_YqeH ribosome 78.4 35 0.00076 33.1 11.9 141 49-206 28-173 (360)
30 COG0279 GmhA Phosphoheptose is 76.7 19 0.0004 30.9 8.1 121 75-208 28-155 (176)
31 PRK09856 fructoselysine 3-epim 75.5 36 0.00078 31.2 10.8 50 235-300 94-143 (275)
32 PRK04452 acetyl-CoA decarbonyl 75.1 32 0.0007 32.8 10.3 94 153-254 83-185 (319)
33 cd00740 MeTr MeTr subgroup of 73.4 75 0.0016 29.2 13.0 108 142-256 23-131 (252)
34 PRK15408 autoinducer 2-binding 72.8 49 0.0011 31.6 11.3 88 126-220 23-111 (336)
35 COG2185 Sbm Methylmalonyl-CoA 71.9 57 0.0012 27.2 12.5 110 75-209 26-136 (143)
36 cd03322 rpsA The starvation se 71.4 1E+02 0.0022 29.8 14.3 146 75-253 128-274 (361)
37 cd00739 DHPS DHPS subgroup of 71.3 85 0.0018 28.9 15.5 99 142-252 21-128 (257)
38 cd03174 DRE_TIM_metallolyase D 70.5 30 0.00065 31.5 8.9 104 141-251 15-135 (265)
39 COG1149 MinD superfamily P-loo 69.7 12 0.00027 34.6 5.9 93 154-256 155-251 (284)
40 cd03321 mandelate_racemase Man 69.6 94 0.002 29.9 12.5 151 75-250 143-294 (355)
41 cd07943 DRE_TIM_HOA 4-hydroxy- 69.4 93 0.002 28.5 16.9 167 72-256 19-199 (263)
42 KOG0023 Alcohol dehydrogenase, 69.3 9.1 0.0002 36.3 5.1 152 33-247 171-324 (360)
43 PRK10558 alpha-dehydro-beta-de 69.0 43 0.00092 30.8 9.5 70 180-254 9-79 (256)
44 cd03174 DRE_TIM_metallolyase D 67.9 95 0.0021 28.1 14.9 128 72-215 16-160 (265)
45 TIGR01928 menC_lowGC/arch o-su 67.4 1.2E+02 0.0025 28.9 14.7 152 75-256 134-286 (324)
46 cd00423 Pterin_binding Pterin 67.2 1E+02 0.0022 28.2 15.3 101 142-254 21-130 (258)
47 TIGR02370 pyl_corrinoid methyl 67.1 28 0.00062 30.5 7.6 148 72-245 9-164 (197)
48 PF01261 AP_endonuc_2: Xylose 67.0 25 0.00055 30.2 7.4 86 201-300 27-126 (213)
49 PRK09613 thiH thiamine biosynt 66.6 1.5E+02 0.0033 29.9 15.2 104 142-250 115-238 (469)
50 PRK13361 molybdenum cofactor b 66.5 1.2E+02 0.0026 28.8 14.7 130 70-218 43-187 (329)
51 PRK09490 metH B12-dependent me 64.3 1.8E+02 0.0039 33.2 14.6 95 156-256 394-492 (1229)
52 PRK10128 2-keto-3-deoxy-L-rham 62.2 1.1E+02 0.0025 28.3 10.9 103 181-337 9-114 (267)
53 PF00682 HMGL-like: HMGL-like 62.1 1.2E+02 0.0025 27.1 12.0 103 142-247 11-124 (237)
54 COG1751 Uncharacterized conser 61.7 94 0.002 26.3 9.0 85 169-256 7-95 (186)
55 COG0635 HemN Coproporphyrinoge 60.4 78 0.0017 31.4 10.1 58 141-200 200-276 (416)
56 cd01965 Nitrogenase_MoFe_beta_ 60.1 1.4E+02 0.003 29.6 12.0 101 110-217 66-185 (428)
57 TIGR03239 GarL 2-dehydro-3-deo 59.6 1.1E+02 0.0023 28.0 10.2 68 182-254 4-72 (249)
58 PF11020 DUF2610: Domain of un 59.3 13 0.00028 27.5 3.2 28 282-309 48-75 (82)
59 PRK09058 coproporphyrinogen II 59.0 1.9E+02 0.004 29.0 12.7 109 141-260 226-335 (449)
60 COG3623 SgaU Putative L-xylulo 58.8 28 0.0006 31.6 5.8 78 43-135 65-155 (287)
61 cd00308 enolase_like Enolase-s 58.7 41 0.00089 30.1 7.3 88 163-256 120-208 (229)
62 TIGR00542 hxl6Piso_put hexulos 58.2 1.3E+02 0.0027 27.7 10.7 50 235-300 98-147 (279)
63 TIGR02026 BchE magnesium-proto 58.1 2.2E+02 0.0047 28.9 13.6 78 173-253 223-306 (497)
64 PRK13958 N-(5'-phosphoribosyl) 57.0 44 0.00096 29.6 7.0 65 154-224 16-83 (207)
65 TIGR00238 KamA family protein. 56.3 1.9E+02 0.0041 27.7 13.5 105 74-188 144-250 (331)
66 cd00959 DeoC 2-deoxyribose-5-p 55.8 1.4E+02 0.0031 26.1 15.5 157 73-250 15-180 (203)
67 cd03318 MLE Muconate Lactonizi 55.5 2E+02 0.0043 27.7 14.5 86 164-255 215-301 (365)
68 TIGR03822 AblA_like_2 lysine-2 55.1 1.9E+02 0.0042 27.4 15.2 132 72-216 119-260 (321)
69 cd04742 NPD_FabD 2-Nitropropan 54.7 57 0.0012 32.3 7.9 94 155-252 7-103 (418)
70 PRK09856 fructoselysine 3-epim 54.4 91 0.002 28.4 9.1 61 193-255 3-71 (275)
71 PRK14017 galactonate dehydrata 54.1 2.2E+02 0.0047 27.7 13.1 157 74-252 125-287 (382)
72 cd03325 D-galactonate_dehydrat 53.2 2.1E+02 0.0047 27.4 14.1 158 75-251 125-285 (352)
73 PF05690 ThiG: Thiazole biosyn 53.0 1.8E+02 0.0039 26.5 13.8 115 126-250 60-181 (247)
74 cd07944 DRE_TIM_HOA_like 4-hyd 52.8 1E+02 0.0022 28.4 9.0 102 140-250 15-128 (266)
75 PF13407 Peripla_BP_4: Peripla 52.7 70 0.0015 28.5 7.9 74 144-220 13-86 (257)
76 TIGR00640 acid_CoA_mut_C methy 52.7 1.3E+02 0.0028 24.6 12.3 108 75-208 16-125 (132)
77 PRK01045 ispH 4-hydroxy-3-meth 52.3 79 0.0017 29.8 8.2 112 188-332 156-275 (298)
78 TIGR00190 thiC thiamine biosyn 52.2 2.4E+02 0.0053 27.7 11.5 150 75-262 77-230 (423)
79 PRK12360 4-hydroxy-3-methylbut 52.1 79 0.0017 29.6 8.1 110 188-332 157-274 (281)
80 PRK12581 oxaloacetate decarbox 51.8 2.7E+02 0.0059 28.1 14.3 154 73-245 103-263 (468)
81 PRK05692 hydroxymethylglutaryl 51.6 1.5E+02 0.0033 27.7 10.0 101 142-250 23-139 (287)
82 cd07943 DRE_TIM_HOA 4-hydroxy- 51.4 1.2E+02 0.0025 27.9 9.2 26 142-168 19-44 (263)
83 PRK13210 putative L-xylulose 5 50.8 2E+02 0.0043 26.3 12.1 50 235-300 98-147 (284)
84 PRK08195 4-hyroxy-2-oxovalerat 50.8 2.3E+02 0.0051 27.1 18.0 24 72-95 22-45 (337)
85 TIGR00216 ispH_lytB (E)-4-hydr 50.3 73 0.0016 29.8 7.5 120 180-332 146-273 (280)
86 TIGR03822 AblA_like_2 lysine-2 49.9 2.3E+02 0.0051 26.9 11.9 80 174-256 152-239 (321)
87 PRK13753 dihydropteroate synth 49.7 2.2E+02 0.0048 26.6 13.5 99 142-254 22-129 (279)
88 PRK13209 L-xylulose 5-phosphat 49.5 2.1E+02 0.0045 26.2 12.3 50 235-300 103-152 (283)
89 TIGR03849 arch_ComA phosphosul 49.2 1.1E+02 0.0024 27.8 8.3 190 148-356 11-231 (237)
90 TIGR01228 hutU urocanate hydra 49.1 46 0.001 33.4 6.2 89 126-223 157-257 (545)
91 PF00762 Ferrochelatase: Ferro 48.5 2.2E+02 0.0047 27.1 10.7 88 144-255 206-299 (316)
92 PRK14461 ribosomal RNA large s 48.2 1.7E+02 0.0036 28.6 9.8 85 172-257 252-354 (371)
93 PLN02363 phosphoribosylanthran 48.2 75 0.0016 29.3 7.2 72 143-224 56-130 (256)
94 cd03327 MR_like_2 Mandelate ra 48.2 2.5E+02 0.0055 26.8 12.7 158 74-251 121-280 (341)
95 PRK05414 urocanate hydratase; 47.6 52 0.0011 33.2 6.3 89 126-223 166-266 (556)
96 PF07994 NAD_binding_5: Myo-in 47.3 62 0.0013 30.5 6.6 142 144-328 131-283 (295)
97 cd05007 SIS_Etherase N-acetylm 47.2 2.2E+02 0.0048 26.1 10.2 120 75-206 36-162 (257)
98 TIGR03699 mena_SCO4550 menaqui 47.1 2.6E+02 0.0057 26.6 12.6 124 72-212 72-221 (340)
99 TIGR02082 metH 5-methyltetrahy 47.0 4.2E+02 0.009 30.3 13.9 107 144-256 367-476 (1178)
100 PRK12928 lipoyl synthase; Prov 46.7 1.8E+02 0.0039 27.3 9.7 79 173-255 186-282 (290)
101 cd07937 DRE_TIM_PC_TC_5S Pyruv 46.6 2.4E+02 0.0052 26.1 21.2 131 72-214 18-162 (275)
102 COG2102 Predicted ATPases of P 46.3 1.9E+02 0.0041 26.1 9.1 103 173-303 74-177 (223)
103 cd06300 PBP1_ABC_sugar_binding 45.9 2.2E+02 0.0048 25.4 10.3 74 144-219 14-90 (272)
104 PF02401 LYTB: LytB protein; 45.6 59 0.0013 30.4 6.2 112 188-332 155-274 (281)
105 TIGR03217 4OH_2_O_val_ald 4-hy 45.5 2.8E+02 0.0061 26.5 18.0 24 72-95 21-44 (333)
106 cd02930 DCR_FMN 2,4-dienoyl-Co 45.3 2.9E+02 0.0062 26.6 11.7 15 80-94 142-156 (353)
107 PLN02746 hydroxymethylglutaryl 45.0 3E+02 0.0064 26.6 11.5 95 147-251 69-182 (347)
108 cd04740 DHOD_1B_like Dihydroor 44.9 2.6E+02 0.0056 25.9 13.6 155 74-245 101-286 (296)
109 COG2200 Rtn c-di-GMP phosphodi 44.8 2.1E+02 0.0046 26.0 9.8 129 110-251 69-213 (256)
110 PRK08508 biotin synthase; Prov 44.8 2.6E+02 0.0056 25.9 10.5 10 341-350 261-270 (279)
111 cd02070 corrinoid_protein_B12- 44.2 2.2E+02 0.0047 24.9 9.5 22 73-94 9-30 (201)
112 TIGR00381 cdhD CO dehydrogenas 44.0 3.2E+02 0.007 26.8 11.1 96 156-258 150-254 (389)
113 COG2355 Zn-dependent dipeptida 43.9 2E+02 0.0044 27.3 9.4 164 154-349 86-300 (313)
114 PRK08609 hypothetical protein; 43.7 3.9E+02 0.0085 27.7 14.2 161 77-254 351-527 (570)
115 cd00950 DHDPS Dihydrodipicolin 43.5 2.7E+02 0.0058 25.7 12.7 31 70-100 16-46 (284)
116 COG4130 Predicted sugar epimer 43.5 1.2E+02 0.0027 27.2 7.3 83 199-300 50-136 (272)
117 TIGR01278 DPOR_BchB light-inde 43.3 3.3E+02 0.0072 27.7 11.8 101 110-217 70-191 (511)
118 PRK13352 thiamine biosynthesis 43.2 3.4E+02 0.0075 26.9 11.5 96 140-262 138-233 (431)
119 PF02679 ComA: (2R)-phospho-3- 43.0 47 0.001 30.3 5.0 99 148-249 24-131 (244)
120 COG0135 TrpF Phosphoribosylant 42.9 1.7E+02 0.0038 26.0 8.4 82 155-248 18-102 (208)
121 cd03329 MR_like_4 Mandelate ra 42.6 3.2E+02 0.0069 26.4 15.1 155 73-251 143-299 (368)
122 PRK14456 ribosomal RNA large s 42.2 1.6E+02 0.0036 28.6 8.9 83 172-256 259-354 (368)
123 cd03328 MR_like_3 Mandelate ra 42.1 3.2E+02 0.007 26.2 13.0 152 74-251 139-293 (352)
124 COG4464 CapC Capsular polysacc 42.0 99 0.0022 27.8 6.5 62 72-170 17-78 (254)
125 COG1140 NarY Nitrate reductase 41.8 11 0.00024 36.3 0.7 55 186-246 262-317 (513)
126 TIGR00398 metG methionyl-tRNA 41.5 1.4E+02 0.003 30.6 8.7 47 144-191 67-114 (530)
127 PRK01222 N-(5'-phosphoribosyl) 41.5 98 0.0021 27.5 6.7 65 155-225 19-86 (210)
128 cd03323 D-glucarate_dehydratas 41.3 1E+02 0.0022 30.3 7.4 82 164-253 239-321 (395)
129 PRK12268 methionyl-tRNA synthe 40.9 1.1E+02 0.0023 31.5 7.9 46 145-191 73-119 (556)
130 PF11242 DUF2774: Protein of u 40.8 37 0.00079 23.9 2.9 23 290-312 15-37 (63)
131 cd00408 DHDPS-like Dihydrodipi 40.5 2.9E+02 0.0064 25.3 13.2 105 70-187 13-121 (281)
132 smart00633 Glyco_10 Glycosyl h 40.1 1.5E+02 0.0033 26.9 8.0 78 174-251 135-225 (254)
133 TIGR02534 mucon_cyclo muconate 39.9 3.5E+02 0.0076 26.0 14.9 88 163-256 213-301 (368)
134 PRK05718 keto-hydroxyglutarate 39.8 2.6E+02 0.0056 24.9 9.2 52 72-135 24-75 (212)
135 PRK14455 ribosomal RNA large s 39.3 1.9E+02 0.0041 28.0 8.8 83 173-257 244-339 (356)
136 PRK14459 ribosomal RNA large s 39.2 2.7E+02 0.0059 27.2 9.9 85 172-256 262-360 (373)
137 PF01487 DHquinase_I: Type I 3 39.1 2.8E+02 0.006 24.6 10.8 120 72-207 72-192 (224)
138 COG2242 CobL Precorrin-6B meth 39.0 2.7E+02 0.0058 24.4 9.3 127 72-226 17-163 (187)
139 PRK09485 mmuM homocysteine met 38.8 3.4E+02 0.0073 25.5 13.3 173 74-250 45-246 (304)
140 TIGR02666 moaA molybdenum cofa 38.8 3.5E+02 0.0075 25.6 14.6 131 70-219 41-187 (334)
141 PRK00077 eno enolase; Provisio 38.7 2.2E+02 0.0047 28.3 9.4 97 143-250 262-362 (425)
142 PLN00191 enolase 38.5 2.2E+02 0.0049 28.6 9.4 98 143-251 296-395 (457)
143 cd01974 Nitrogenase_MoFe_beta 38.4 4.1E+02 0.0089 26.4 13.0 56 110-168 70-126 (435)
144 TIGR01060 eno phosphopyruvate 38.2 2.2E+02 0.0048 28.2 9.4 98 143-251 263-364 (425)
145 PF04748 Polysacc_deac_2: Dive 38.1 2.5E+02 0.0054 25.0 8.8 121 72-215 71-203 (213)
146 PRK15063 isocitrate lyase; Pro 38.0 1.5E+02 0.0033 29.4 7.9 134 48-196 147-314 (428)
147 cd00502 DHQase_I Type I 3-dehy 37.8 2.9E+02 0.0063 24.5 10.8 108 72-196 73-181 (225)
148 TIGR01496 DHPS dihydropteroate 37.8 3.2E+02 0.007 25.0 14.9 98 142-252 20-126 (257)
149 KOG3131 Uncharacterized conser 37.7 3.2E+02 0.007 25.0 9.6 112 126-255 25-150 (281)
150 KOG4175 Tryptophan synthase al 37.2 1.6E+02 0.0035 26.2 7.0 97 45-159 93-202 (268)
151 PRK15072 bifunctional D-altron 37.2 1.2E+02 0.0026 29.8 7.3 85 163-253 232-317 (404)
152 PRK00912 ribonuclease P protei 36.8 3.1E+02 0.0068 24.5 12.8 173 73-305 14-202 (237)
153 COG2185 Sbm Methylmalonyl-CoA 36.8 1.8E+02 0.0039 24.3 7.0 56 192-257 19-76 (143)
154 cd03317 NAAAR N-acylamino acid 36.6 3.9E+02 0.0084 25.5 14.6 150 75-254 139-289 (354)
155 PF13378 MR_MLE_C: Enolase C-t 36.4 36 0.00079 26.5 2.9 55 196-256 3-57 (111)
156 TIGR01927 menC_gamma/gm+ o-suc 36.3 1.8E+02 0.0039 27.4 8.0 74 179-257 196-270 (307)
157 TIGR02311 HpaI 2,4-dihydroxyhe 36.3 3.4E+02 0.0073 24.8 10.3 103 181-337 3-108 (249)
158 cd04728 ThiG Thiazole synthase 36.3 3.4E+02 0.0074 24.9 18.9 68 141-209 72-143 (248)
159 PRK08195 4-hyroxy-2-oxovalerat 36.1 3.4E+02 0.0074 26.0 10.0 24 142-166 22-45 (337)
160 COG3215 PilZ Tfp pilus assembl 36.0 86 0.0019 24.5 4.6 73 73-157 18-106 (117)
161 COG0826 Collagenase and relate 36.0 2.7E+02 0.0059 26.9 9.3 43 176-218 14-66 (347)
162 COG2256 MGS1 ATPase related to 35.5 2.7E+02 0.0058 27.6 8.9 106 79-200 37-143 (436)
163 PF05913 DUF871: Bacterial pro 35.5 3.8E+02 0.0083 26.0 10.2 159 73-255 12-180 (357)
164 cd01321 ADGF Adenosine deamina 35.4 3.9E+02 0.0086 25.6 10.3 15 235-249 237-251 (345)
165 TIGR02637 RhaS rhamnose ABC tr 35.4 3.5E+02 0.0076 24.7 10.3 72 144-218 13-85 (302)
166 PLN02951 Molybderin biosynthes 35.3 4.3E+02 0.0093 25.7 13.8 136 72-228 90-240 (373)
167 PRK13505 formate--tetrahydrofo 35.3 70 0.0015 32.8 5.2 55 201-256 359-413 (557)
168 TIGR00676 fadh2 5,10-methylene 35.2 3.6E+02 0.0079 24.8 14.8 151 74-247 14-186 (272)
169 PRK07945 hypothetical protein; 35.1 4.1E+02 0.0089 25.4 15.2 157 75-247 111-287 (335)
170 PF01175 Urocanase: Urocanase; 35.1 93 0.002 31.5 5.9 85 125-224 155-257 (546)
171 PF00148 Oxidored_nitro: Nitro 34.9 4.3E+02 0.0092 25.6 10.8 139 110-254 59-227 (398)
172 PRK05441 murQ N-acetylmuramic 34.6 3.9E+02 0.0086 25.1 10.8 118 77-206 51-175 (299)
173 PRK14463 ribosomal RNA large s 34.5 3.2E+02 0.0069 26.4 9.5 82 173-256 232-326 (349)
174 PRK00208 thiG thiazole synthas 34.2 3.7E+02 0.0081 24.7 18.9 68 141-209 72-143 (250)
175 PF06415 iPGM_N: BPG-independe 34.1 1.9E+02 0.0042 26.0 7.4 77 173-249 12-99 (223)
176 KOG0258 Alanine aminotransfera 34.0 4.8E+02 0.01 25.8 10.6 100 110-214 119-248 (475)
177 TIGR03821 AblA_like_1 lysine-2 33.9 4.2E+02 0.0091 25.2 13.5 131 73-215 126-265 (321)
178 COG1082 IolE Sugar phosphate i 33.8 3.5E+02 0.0077 24.3 10.2 108 179-300 19-140 (274)
179 TIGR01428 HAD_type_II 2-haloal 33.8 1.3E+02 0.0027 25.9 6.2 62 147-209 61-128 (198)
180 PRK15108 biotin synthase; Prov 33.5 4.4E+02 0.0096 25.3 11.0 112 142-256 76-196 (345)
181 TIGR00126 deoC deoxyribose-pho 32.5 3.6E+02 0.0078 24.0 18.5 158 72-250 15-181 (211)
182 PRK00133 metG methionyl-tRNA s 32.5 2E+02 0.0043 30.5 8.4 95 91-191 5-117 (673)
183 PRK01060 endonuclease IV; Prov 32.4 2.9E+02 0.0063 25.2 8.7 60 192-253 3-72 (281)
184 PRK00414 gmhA phosphoheptose i 32.4 3.3E+02 0.0071 23.7 8.5 120 74-206 30-155 (192)
185 PRK08208 coproporphyrinogen II 32.2 3.3E+02 0.0073 27.0 9.6 57 141-199 204-274 (430)
186 COG0422 ThiC Thiamine biosynth 32.2 5E+02 0.011 25.5 12.5 145 75-262 78-231 (432)
187 COG0773 MurC UDP-N-acetylmuram 31.9 28 0.00061 34.8 1.8 29 293-321 111-141 (459)
188 PLN02540 methylenetetrahydrofo 31.8 6E+02 0.013 26.4 15.6 151 74-246 14-197 (565)
189 PRK08446 coproporphyrinogen II 31.7 4.4E+02 0.0095 25.3 10.1 57 141-199 161-230 (350)
190 PRK13478 phosphonoacetaldehyde 31.7 1.8E+02 0.0038 26.5 7.1 71 174-245 103-173 (267)
191 PRK05588 histidinol-phosphatas 31.3 4E+02 0.0086 24.1 17.3 167 75-255 16-220 (255)
192 PRK12570 N-acetylmuramic acid- 31.2 4.5E+02 0.0097 24.7 10.7 121 75-206 45-171 (296)
193 PF08734 GYD: GYD domain; Int 31.0 2.3E+02 0.0051 21.4 6.9 63 145-207 19-90 (91)
194 KOG0053 Cystathionine beta-lya 30.9 3.5E+02 0.0076 26.8 9.1 101 152-259 106-207 (409)
195 PRK13803 bifunctional phosphor 30.8 3.2E+02 0.007 28.6 9.5 65 156-225 20-88 (610)
196 TIGR01502 B_methylAsp_ase meth 30.8 1.6E+02 0.0036 29.1 7.0 74 175-253 278-357 (408)
197 PF01876 RNase_P_p30: RNase P 30.6 1.2E+02 0.0026 25.2 5.2 61 189-254 24-85 (150)
198 PRK14466 ribosomal RNA large s 30.6 3.6E+02 0.0077 26.1 9.0 84 172-257 231-327 (345)
199 PF00809 Pterin_bind: Pterin b 30.5 3.8E+02 0.0082 23.6 11.8 89 155-253 28-125 (210)
200 PRK05660 HemN family oxidoredu 30.2 2.9E+02 0.0063 26.8 8.6 86 73-198 141-241 (378)
201 TIGR01422 phosphonatase phosph 30.0 1.9E+02 0.0042 25.9 7.0 72 173-245 100-171 (253)
202 KOG4175 Tryptophan synthase al 29.9 4E+02 0.0087 23.7 8.4 69 174-249 79-153 (268)
203 cd06311 PBP1_ABC_sugar_binding 29.9 4E+02 0.0087 23.7 10.0 75 144-219 14-90 (274)
204 cd08583 PI-PLCc_GDPD_SF_unchar 29.9 3.6E+02 0.0079 24.0 8.7 20 75-94 15-34 (237)
205 COG0761 lytB 4-Hydroxy-3-methy 29.7 2.4E+02 0.0053 26.4 7.3 45 290-334 229-279 (294)
206 COG2987 HutU Urocanate hydrata 29.6 85 0.0018 31.3 4.6 102 110-220 151-261 (561)
207 PRK12267 methionyl-tRNA synthe 29.5 2.9E+02 0.0062 29.1 9.0 48 144-192 72-120 (648)
208 PF00072 Response_reg: Respons 29.5 1.2E+02 0.0026 22.7 4.8 55 154-208 35-91 (112)
209 TIGR00735 hisF imidazoleglycer 29.5 4.3E+02 0.0094 23.9 11.9 93 150-247 159-253 (254)
210 KOG1321 Protoheme ferro-lyase 29.4 1.1E+02 0.0024 29.1 5.1 61 177-240 142-209 (395)
211 PF13580 SIS_2: SIS domain; PD 29.3 61 0.0013 26.5 3.2 114 74-196 21-137 (138)
212 PF01619 Pro_dh: Proline dehyd 29.2 4.9E+02 0.011 24.5 13.0 161 75-254 92-283 (313)
213 COG2055 Malate/L-lactate dehyd 28.9 3.4E+02 0.0074 26.2 8.5 94 141-249 5-113 (349)
214 PRK07003 DNA polymerase III su 28.9 5.2E+02 0.011 28.1 10.4 96 142-246 99-197 (830)
215 PRK09140 2-dehydro-3-deoxy-6-p 28.8 4.1E+02 0.0089 23.4 9.4 26 308-334 98-123 (206)
216 COG3693 XynA Beta-1,4-xylanase 28.7 4.5E+02 0.0098 25.2 9.0 85 142-229 168-265 (345)
217 COG2069 CdhD CO dehydrogenase/ 28.6 5.1E+02 0.011 24.5 10.2 95 154-255 159-262 (403)
218 TIGR02127 pyrF_sub2 orotidine 28.4 4.7E+02 0.01 24.1 12.9 55 144-199 36-97 (261)
219 PRK00087 4-hydroxy-3-methylbut 28.3 2.3E+02 0.005 29.8 8.0 110 187-331 153-270 (647)
220 COG4077 Uncharacterized protei 28.1 1.8E+02 0.004 23.8 5.5 81 127-209 34-114 (156)
221 TIGR02668 moaA_archaeal probab 28.1 4.9E+02 0.011 24.1 13.9 126 71-216 39-179 (302)
222 COG0276 HemH Protoheme ferro-l 28.0 5.4E+02 0.012 24.6 15.9 177 64-254 66-266 (320)
223 PRK07379 coproporphyrinogen II 27.9 4.4E+02 0.0096 25.8 9.5 101 48-198 126-253 (400)
224 PRK14464 ribosomal RNA large s 27.8 5.6E+02 0.012 24.7 12.8 105 150-256 200-318 (344)
225 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.5 3.2E+02 0.0068 25.3 8.0 34 324-357 236-271 (275)
226 PRK05283 deoxyribose-phosphate 27.3 3.4E+02 0.0074 25.0 7.9 84 72-164 143-227 (257)
227 COG0626 MetC Cystathionine bet 26.9 3E+02 0.0065 27.2 7.9 45 215-259 150-194 (396)
228 cd03314 MAL Methylaspartate am 26.7 3.2E+02 0.007 26.6 8.1 73 176-253 243-321 (369)
229 PRK10886 DnaA initiator-associ 26.6 2.8E+02 0.0061 24.3 7.1 122 74-206 27-153 (196)
230 PLN02224 methionine-tRNA ligas 26.6 3.4E+02 0.0074 28.5 8.7 100 86-191 67-184 (616)
231 TIGR03700 mena_SCO4494 putativ 26.6 5.8E+02 0.013 24.5 12.5 47 141-188 78-125 (351)
232 COG1751 Uncharacterized conser 26.5 2.4E+02 0.0052 23.9 6.0 75 72-161 11-85 (186)
233 TIGR00314 cdhA CO dehydrogenas 26.3 4.1E+02 0.0089 28.7 9.2 90 161-259 232-336 (784)
234 TIGR00126 deoC deoxyribose-pho 26.3 4.4E+02 0.0095 23.4 8.3 75 73-162 130-205 (211)
235 COG2159 Predicted metal-depend 26.2 2.9E+02 0.0062 25.9 7.5 102 155-256 55-169 (293)
236 cd01948 EAL EAL domain. This d 26.2 3.5E+02 0.0076 23.5 7.9 114 128-251 83-209 (240)
237 cd03313 enolase Enolase: Enola 26.2 4.1E+02 0.0088 26.2 8.9 97 142-249 261-361 (408)
238 PRK11893 methionyl-tRNA synthe 26.1 3.3E+02 0.0073 27.4 8.6 48 144-192 69-117 (511)
239 PF03279 Lip_A_acyltrans: Bact 25.9 5.3E+02 0.011 23.8 9.7 64 78-161 110-173 (295)
240 PRK13210 putative L-xylulose 5 25.9 5E+02 0.011 23.5 10.8 94 154-248 24-150 (284)
241 COG2040 MHT1 Homocysteine/sele 25.9 5.6E+02 0.012 24.1 10.8 169 74-252 42-241 (300)
242 PRK09427 bifunctional indole-3 25.8 2.4E+02 0.0052 28.3 7.2 63 155-225 273-338 (454)
243 TIGR03180 UraD_2 OHCU decarbox 25.8 80 0.0017 26.8 3.3 70 286-362 37-111 (158)
244 TIGR03217 4OH_2_O_val_ald 4-hy 25.7 5.7E+02 0.012 24.4 9.6 35 180-215 92-128 (333)
245 cd00419 Ferrochelatase_C Ferro 25.7 3.7E+02 0.008 21.9 9.3 63 127-189 19-91 (135)
246 PRK00941 acetyl-CoA decarbonyl 25.4 4.1E+02 0.0088 28.7 9.0 88 160-256 235-337 (781)
247 PRK08776 cystathionine gamma-s 25.3 6.5E+02 0.014 24.6 10.5 21 303-323 267-289 (405)
248 TIGR03164 UHCUDC OHCU decarbox 25.3 91 0.002 26.4 3.6 25 338-362 87-111 (157)
249 PF01118 Semialdhyde_dh: Semia 25.3 68 0.0015 25.4 2.7 27 74-100 76-102 (121)
250 cd04743 NPD_PKS 2-Nitropropane 25.2 6E+02 0.013 24.2 9.9 65 184-251 23-89 (320)
251 COG1879 RbsB ABC-type sugar tr 25.2 5.5E+02 0.012 23.8 10.8 89 128-221 35-123 (322)
252 cd03324 rTSbeta_L-fuconate_deh 25.2 6.7E+02 0.015 24.8 12.8 152 74-251 197-352 (415)
253 TIGR01210 conserved hypothetic 24.8 5.9E+02 0.013 24.0 9.9 27 178-204 117-145 (313)
254 cd06317 PBP1_ABC_sugar_binding 24.8 4.9E+02 0.011 23.0 9.3 72 144-219 15-86 (275)
255 PF00697 PRAI: N-(5'phosphorib 24.7 3.3E+02 0.0072 23.7 7.3 67 154-226 14-81 (197)
256 PRK04820 rnpA ribonuclease P; 24.5 2.8E+02 0.006 23.2 6.3 60 126-187 49-114 (145)
257 PTZ00081 enolase; Provisional 24.4 5.1E+02 0.011 26.0 9.1 100 142-252 281-384 (439)
258 TIGR00720 sda_mono L-serine de 24.3 6E+02 0.013 25.6 9.5 59 247-312 140-198 (455)
259 PRK07328 histidinol-phosphatas 24.3 5.5E+02 0.012 23.4 11.6 170 76-254 19-230 (269)
260 PRK11613 folP dihydropteroate 24.2 5.9E+02 0.013 23.8 13.0 97 143-252 36-141 (282)
261 cd00019 AP2Ec AP endonuclease 24.2 4.6E+02 0.0099 23.9 8.5 109 176-302 11-139 (279)
262 PRK00507 deoxyribose-phosphate 24.2 3.5E+02 0.0076 24.2 7.3 79 70-162 131-209 (221)
263 PRK10550 tRNA-dihydrouridine s 24.1 6.2E+02 0.013 23.9 12.8 138 74-225 74-226 (312)
264 PRK10703 DNA-binding transcrip 23.9 5.9E+02 0.013 23.6 13.8 96 72-197 28-123 (341)
265 PF10566 Glyco_hydro_97: Glyco 23.8 2.2E+02 0.0048 26.5 6.1 58 197-254 28-96 (273)
266 cd00019 AP2Ec AP endonuclease 23.7 5.6E+02 0.012 23.3 10.0 95 153-248 17-140 (279)
267 PRK00454 engB GTP-binding prot 23.7 4.4E+02 0.0096 22.1 9.3 17 172-188 180-196 (196)
268 PRK02910 light-independent pro 23.6 8E+02 0.017 25.0 12.9 100 110-217 70-191 (519)
269 cd00814 MetRS_core catalytic c 23.6 97 0.0021 29.3 3.9 46 144-190 68-114 (319)
270 PRK12558 glutamyl-tRNA synthet 23.6 2.7E+02 0.0058 27.9 7.0 64 142-210 48-111 (445)
271 TIGR02814 pfaD_fam PfaD family 23.5 3.7E+02 0.0081 26.9 7.9 93 155-251 12-107 (444)
272 COG1121 ZnuC ABC-type Mn/Zn tr 23.4 4.2E+02 0.009 24.4 7.7 45 160-206 155-205 (254)
273 PRK06256 biotin synthase; Vali 23.3 6.4E+02 0.014 23.8 12.4 21 71-91 90-110 (336)
274 PRK10128 2-keto-3-deoxy-L-rham 23.3 4.1E+02 0.0088 24.6 7.8 67 157-229 164-245 (267)
275 TIGR00423 radical SAM domain p 23.2 6.2E+02 0.013 23.7 11.5 21 235-255 149-169 (309)
276 PRK10551 phage resistance prot 23.2 6.3E+02 0.014 25.8 9.9 113 128-250 349-473 (518)
277 cd02932 OYE_YqiM_FMN Old yello 23.2 6.5E+02 0.014 23.9 12.4 82 127-209 220-311 (336)
278 PF01904 DUF72: Protein of unk 23.1 3.9E+02 0.0085 23.9 7.6 94 80-187 11-113 (230)
279 cd01973 Nitrogenase_VFe_beta_l 23.1 7.7E+02 0.017 24.7 15.8 107 110-217 71-191 (454)
280 PRK06424 transcription factor; 23.1 3.7E+02 0.0079 22.4 6.7 75 235-312 24-110 (144)
281 cd07938 DRE_TIM_HMGL 3-hydroxy 23.1 6E+02 0.013 23.4 15.5 125 72-214 17-162 (274)
282 TIGR01212 radical SAM protein, 23.0 6.3E+02 0.014 23.6 13.5 110 139-252 88-214 (302)
283 PRK06015 keto-hydroxyglutarate 23.0 1.4E+02 0.0031 26.4 4.5 88 143-249 14-102 (201)
284 PF10668 Phage_terminase: Phag 22.9 1.1E+02 0.0023 21.5 2.9 17 290-306 24-40 (60)
285 PF14606 Lipase_GDSL_3: GDSL-l 22.9 2E+02 0.0044 24.9 5.3 85 77-168 51-142 (178)
286 COG2896 MoaA Molybdenum cofact 22.8 6.8E+02 0.015 23.9 11.3 128 71-220 42-186 (322)
287 COG3195 Uncharacterized protei 22.6 49 0.0011 28.2 1.4 25 338-362 100-124 (176)
288 CHL00144 odpB pyruvate dehydro 22.5 5.7E+02 0.012 24.3 8.9 103 146-252 5-118 (327)
289 TIGR01430 aden_deam adenosine 22.3 6.5E+02 0.014 23.6 12.1 110 142-252 65-193 (324)
290 COG1026 Predicted Zn-dependent 22.3 2.8E+02 0.006 30.6 7.2 78 283-361 418-502 (978)
291 TIGR00274 N-acetylmuramic acid 22.2 2.9E+02 0.0062 25.9 6.6 51 155-206 119-170 (291)
292 PRK02901 O-succinylbenzoate sy 22.2 4.8E+02 0.01 24.9 8.3 97 149-257 148-245 (327)
293 cd01967 Nitrogenase_MoFe_alpha 22.2 7.3E+02 0.016 24.1 13.9 100 110-216 72-188 (406)
294 PRK09997 hydroxypyruvate isome 22.1 5.8E+02 0.013 22.9 11.0 50 235-300 89-138 (258)
295 PLN02775 Probable dihydrodipic 22.0 3.6E+02 0.0079 25.3 7.1 58 150-208 67-124 (286)
296 COG4555 NatA ABC-type Na+ tran 21.9 4.6E+02 0.0099 23.7 7.2 67 141-209 104-202 (245)
297 TIGR01862 N2-ase-Ialpha nitrog 21.9 8E+02 0.017 24.4 12.3 101 110-217 102-220 (443)
298 cd08590 PI-PLCc_Rv2075c_like C 21.7 4.1E+02 0.0089 24.5 7.5 100 81-193 47-167 (267)
299 PRK08392 hypothetical protein; 21.7 5.5E+02 0.012 22.5 13.8 151 76-248 15-178 (215)
300 PF14871 GHL6: Hypothetical gl 21.7 72 0.0016 26.1 2.2 22 234-255 47-68 (132)
301 PRK08208 coproporphyrinogen II 21.6 7.9E+02 0.017 24.3 11.0 40 174-213 176-220 (430)
302 PRK02412 aroD 3-dehydroquinate 21.6 6.2E+02 0.013 23.0 11.7 97 73-186 93-193 (253)
303 PRK08445 hypothetical protein; 21.6 7.3E+02 0.016 23.8 10.2 22 235-256 186-207 (348)
304 cd06595 GH31_xylosidase_XylS-l 21.5 2.4E+02 0.0053 26.3 6.1 54 198-251 22-94 (292)
305 COG0820 Predicted Fe-S-cluster 21.5 7.5E+02 0.016 23.9 10.2 83 172-257 236-332 (349)
306 TIGR00284 dihydropteroate synt 21.4 6.7E+02 0.015 25.6 9.4 94 145-251 165-258 (499)
307 KOG1549 Cysteine desulfurase N 21.3 3.2E+02 0.0069 27.2 6.8 66 149-215 142-212 (428)
308 PRK11865 pyruvate ferredoxin o 21.3 6.9E+02 0.015 23.6 8.9 114 78-211 165-289 (299)
309 PRK14847 hypothetical protein; 21.3 7E+02 0.015 24.0 9.1 109 142-254 51-180 (333)
310 cd06591 GH31_xylosidase_XylS X 21.2 2.2E+02 0.0047 27.0 5.7 55 199-253 22-89 (319)
311 PRK10826 2-deoxyglucose-6-phos 21.1 2.6E+02 0.0056 24.5 5.9 71 173-245 93-163 (222)
312 TIGR00538 hemN oxygen-independ 21.1 7.1E+02 0.015 24.8 9.7 17 244-260 316-332 (455)
313 PF01402 RHH_1: Ribbon-helix-h 21.1 2E+02 0.0044 17.4 3.8 22 286-307 9-30 (39)
314 PF05049 IIGP: Interferon-indu 21.1 2.9E+02 0.0063 27.0 6.5 70 109-182 129-214 (376)
315 PF01297 TroA: Periplasmic sol 21.0 5.7E+02 0.012 23.0 8.3 51 198-255 183-233 (256)
316 PF12816 Vps8: Golgi CORVET co 21.0 89 0.0019 27.5 2.8 64 177-245 4-67 (196)
317 cd06597 GH31_transferase_CtsY 21.0 2.6E+02 0.0056 26.8 6.2 52 199-250 22-104 (340)
318 cd06594 GH31_glucosidase_YihQ 21.0 2.4E+02 0.0052 26.7 5.9 52 199-250 21-90 (317)
319 PF01081 Aldolase: KDPG and KH 20.8 1.8E+02 0.0039 25.6 4.7 87 144-249 19-106 (196)
320 KOG0059 Lipid exporter ABCA1 a 20.8 4.7E+02 0.01 28.8 8.8 68 140-209 668-767 (885)
321 PF13167 GTP-bdg_N: GTP-bindin 20.8 97 0.0021 23.9 2.6 66 285-351 7-79 (95)
322 cd03320 OSBS o-Succinylbenzoat 20.7 2.9E+02 0.0064 25.1 6.4 74 177-256 166-239 (263)
323 PF14606 Lipase_GDSL_3: GDSL-l 20.7 2.6E+02 0.0057 24.2 5.6 69 84-168 29-99 (178)
324 COG2022 ThiG Uncharacterized e 20.7 4E+02 0.0086 24.3 6.7 51 141-191 79-133 (262)
325 cd01538 PBP1_ABC_xylose_bindin 20.6 6.3E+02 0.014 22.8 10.2 73 144-220 14-86 (288)
326 cd00952 CHBPH_aldolase Trans-o 20.6 5.2E+02 0.011 24.3 8.1 102 141-251 25-142 (309)
327 cd03527 RuBisCO_small Ribulose 20.5 4.2E+02 0.009 20.6 8.1 73 70-168 10-83 (99)
328 PRK10014 DNA-binding transcrip 20.4 6.9E+02 0.015 23.1 12.8 96 72-197 33-128 (342)
329 cd01320 ADA Adenosine deaminas 20.4 7.1E+02 0.015 23.2 12.1 110 142-252 66-194 (325)
330 cd00812 LeuRS_core catalytic c 20.3 4.2E+02 0.0092 24.9 7.5 47 144-191 68-117 (314)
331 PRK09234 fbiC FO synthase; Rev 20.3 9.9E+02 0.021 26.2 11.0 113 142-256 102-243 (843)
332 cd06598 GH31_transferase_CtsZ 20.3 2.4E+02 0.0052 26.7 5.8 53 199-251 22-90 (317)
333 COG4943 Predicted signal trans 20.3 5E+02 0.011 26.4 7.9 122 111-249 342-476 (524)
334 TIGR01501 MthylAspMutase methy 20.3 4.9E+02 0.011 21.3 13.9 108 75-204 15-125 (134)
335 COG1225 Bcp Peroxiredoxin [Pos 20.2 5.4E+02 0.012 21.8 7.4 55 154-209 24-84 (157)
336 cd01966 Nitrogenase_NifN_1 Nit 20.2 8.4E+02 0.018 24.0 14.0 105 110-217 66-187 (417)
337 cd06593 GH31_xylosidase_YicI Y 20.2 2.8E+02 0.006 26.0 6.2 53 198-250 21-85 (308)
338 PF07894 DUF1669: Protein of u 20.2 5.9E+02 0.013 23.9 8.1 81 158-247 116-200 (284)
339 COG0329 DapA Dihydrodipicolina 20.1 7.2E+02 0.016 23.3 9.8 111 142-256 22-143 (299)
340 KOG0256 1-aminocyclopropane-1- 20.1 3.6E+02 0.0079 26.8 6.8 60 200-259 210-274 (471)
341 TIGR01329 cysta_beta_ly_E cyst 20.1 6.1E+02 0.013 24.5 8.8 61 148-217 99-164 (378)
342 PF01120 Alpha_L_fucos: Alpha- 20.1 4E+02 0.0086 25.6 7.3 37 218-254 122-161 (346)
343 PRK14865 rnpA ribonuclease P; 20.1 3.3E+02 0.0071 21.6 5.7 40 126-168 46-87 (116)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2e-64 Score=477.05 Aligned_cols=297 Identities=39% Similarity=0.600 Sum_probs=264.8
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHH
Q 017861 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (365)
Q Consensus 36 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (365)
|+||+||+||++||+||||||.||+. +.+.+++++.++|++|+|+||||||||++||.|.| |++||+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-------~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~s------E~ilG~ 67 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-------TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRS------EEILGE 67 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-------CCchhhhHHHHHHHHHHHcCCCEEECccccCCCch------HHHHHH
Confidence 78999999999999999999999874 23345678889999999999999999999999988 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCCC--------CCCCHHHHHHHHHHHHHHhCCCceeEEEeCCC---CChHHHHHHHHHH
Q 017861 116 FIKERKQRDPEVEVTVATKFAALP--------WRLGRQSVLAALKDSLFRLGLSSVELYQLAGI---WGNEGFIDGLGDA 184 (365)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~~--------~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~---~~~~~~~~~l~~l 184 (365)
||+.++. |++++|+||++... .+.++++|+++++.||+|||||||||||+|.+ .+.++++++|.+|
T Consensus 68 ~l~~~~~---Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l 144 (316)
T COG0667 68 ALKERGR---RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDEL 144 (316)
T ss_pred HHhccCC---CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9998763 69999999998753 34689999999999999999999999999754 4578999999999
Q ss_pred HHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCCC
Q 017861 185 VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTP 264 (365)
Q Consensus 185 ~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~ 264 (365)
+++||||+||+||++.+++.+++..+ .+++++|.+||+++++.+. +++++|+++||++++|+||++|+|++++..
T Consensus 145 ~~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 145 VREGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 99999999999999999999998874 4799999999999986654 499999999999999999999999999997
Q ss_pred CCCCCCCCC---CCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhhCCCCC
Q 017861 265 QNPPTGPRG---RIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGWRLT 340 (365)
Q Consensus 265 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~~~~L~ 340 (365)
. +.+.+. ..+..+..++..++++.++++|+++|+|++|+||+|++++|.+ ++|+|+++++||++|+++++..|+
T Consensus 220 ~--~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~ 297 (316)
T COG0667 220 G--PEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLS 297 (316)
T ss_pred C--cchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCC
Confidence 5 333221 2355567788889999999999999999999999999999987 899999999999999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 017861 341 DEEVNELRSMASEIK 355 (365)
Q Consensus 341 ~e~~~~l~~~~~~~~ 355 (365)
+++++.|+.......
T Consensus 298 ~~~~~~l~~~~~~~~ 312 (316)
T COG0667 298 EEELAALDEISAEEP 312 (316)
T ss_pred HHHHHHHHHHhhhcc
Confidence 999999998875433
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.3e-63 Score=461.37 Aligned_cols=306 Identities=37% Similarity=0.566 Sum_probs=268.9
Q ss_pred cccccceeeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchH
Q 017861 31 TVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSE 110 (365)
Q Consensus 31 ~~~~~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE 110 (365)
+....|.|+++|++|++||++|||||.+.. |+ +. .+++++++++++|+|+|+||||||++||+|.+ |
T Consensus 7 ~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~---~~---~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~------E 73 (336)
T KOG1575|consen 7 STELGMLRRKLGNSGLKVSPLGLGCMGWTT---FG---GQ-IDKEEAFELLDHAYEAGINFFDTAEVYGNGQS------E 73 (336)
T ss_pred cchhcceeeeccCCCceecceeecceeeec---cc---cC-CCHHHHHHHHHHHHHcCCCEEehhhhcCCccc------H
Confidence 344489999999999999999999973322 22 23 57899999999999999999999999999988 9
Q ss_pred HHHHHHHHhccCCCCCCcEEEEecCCCCC-----CCCCHHHHHHHHHHHHHHhCCCceeEEEeCCC---CChHHHHHHHH
Q 017861 111 TLLGRFIKERKQRDPEVEVTVATKFAALP-----WRLGRQSVLAALKDSLFRLGLSSVELYQLAGI---WGNEGFIDGLG 182 (365)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~~~~~-----~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~---~~~~~~~~~l~ 182 (365)
+++|+||++.+. +|++++|+||++... ...+...+...++.||+|||++||||||+|.+ .+.++++++|.
T Consensus 74 ~llg~~i~~~~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~ 151 (336)
T KOG1575|consen 74 ELLGEFIKSRGW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALT 151 (336)
T ss_pred HHHHHHHHhcCC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHH
Confidence 999999999763 389999999998643 56678899999999999999999999999643 56899999999
Q ss_pred HHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCC
Q 017861 183 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 262 (365)
Q Consensus 183 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~ 262 (365)
+++++|||++||+|+++.+++.+++..++ +++.++|++||++.++.+++++++.|++.||++++|+||++|+|+|++
T Consensus 152 ~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~ 228 (336)
T KOG1575|consen 152 DLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKY 228 (336)
T ss_pred HHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCc
Confidence 99999999999999999999999999865 679999999999999988889999999999999999999999999999
Q ss_pred CCCC-CCCCCCCCC-------CchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHh
Q 017861 263 TPQN-PPTGPRGRI-------YTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAG 333 (365)
Q Consensus 263 ~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~ 333 (365)
.... .+.+..... +.+. +...++++++.++|+++|+|++|+||+|+++++.+ +||||+++++||+||++
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~ 306 (336)
T KOG1575|consen 229 KLGEDSRNGDKRFQFLGLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIG 306 (336)
T ss_pred ccccccccccccccccccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHh
Confidence 8643 333322111 1111 55778899999999999999999999999999987 89999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhhhccCC
Q 017861 334 ALGWRLTDEEVNELRSMASEIKP 356 (365)
Q Consensus 334 a~~~~L~~e~~~~l~~~~~~~~~ 356 (365)
|+...|+++++.+|+++.+....
T Consensus 307 Al~~~Lt~e~~~~l~~~~~~~~~ 329 (336)
T KOG1575|consen 307 ALSVKLTPEEIKELEEIIDKILG 329 (336)
T ss_pred hhhccCCHHHHHHHHHhhccccC
Confidence 99999999999999999877664
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=7.5e-60 Score=453.37 Aligned_cols=302 Identities=30% Similarity=0.454 Sum_probs=254.1
Q ss_pred ccceeeecCCCCcccccceecccc-cCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCC--CCCCCCCchH
Q 017861 34 TAEDKVKLGGSDLKVTKLGVGAWS-WGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINSE 110 (365)
Q Consensus 34 ~~m~~~~lg~tg~~vs~lglGt~~-~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~--g~s~~~~~sE 110 (365)
..|+||+||+||++||+||||||+ +|.. .+.+++.++|++|+++|||+||||+.||+ |.| |
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~----------~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~s------E 74 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHV----------NALESQRAILRKAFDLGITHFDLANNYGPPPGSA------E 74 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCC----------CCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCc------H
Confidence 359999999999999999999996 3321 24578899999999999999999999995 777 9
Q ss_pred HHHHHHHHhccCCCCCCcEEEEecCCCC--C----CCCCHHHHHHHHHHHHHHhCCCceeEEEeCCC---CChHHHHHHH
Q 017861 111 TLLGRFIKERKQRDPEVEVTVATKFAAL--P----WRLGRQSVLAALKDSLFRLGLSSVELYQLAGI---WGNEGFIDGL 181 (365)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~~~~--~----~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~---~~~~~~~~~l 181 (365)
+.||++|++... .+|+++||+||+|.. + ...+++.+++++++||+|||+||||+|++|.+ .+.+++|++|
T Consensus 75 ~~lG~~l~~~~~-~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al 153 (346)
T PRK09912 75 ENFGRLLREDFA-AYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASAL 153 (346)
T ss_pred HHHHHHHHhccc-CCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHH
Confidence 999999986411 128999999998742 1 23579999999999999999999999999764 3478999999
Q ss_pred HHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCC
Q 017861 182 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGK 261 (365)
Q Consensus 182 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~ 261 (365)
++|+++||||+||||||++++++++.+.+...++++.++|++||++++..+..+++++|+++||++++|+||++|+|+++
T Consensus 154 ~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~ 233 (346)
T PRK09912 154 AHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGK 233 (346)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCC
Confidence 99999999999999999999999888876666678899999999999876544699999999999999999999999998
Q ss_pred CCCCCCCCCCC-------CCCCchHHH-hhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHH
Q 017861 262 YTPQNPPTGPR-------GRIYTAEYL-RNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFA 332 (365)
Q Consensus 262 ~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~ 332 (365)
+.... |.+.+ .+.+.+... ....+.++.+.++|+++|+|++|+||+|++++|.+ ++|||+++++||++|+
T Consensus 234 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~ 312 (346)
T PRK09912 234 YLNGI-PQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENV 312 (346)
T ss_pred CCCCC-CCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH
Confidence 85432 21111 011222222 33456678999999999999999999999999987 8999999999999999
Q ss_pred hhh-CCCCCHHHHHHHHHhhhc
Q 017861 333 GAL-GWRLTDEEVNELRSMASE 353 (365)
Q Consensus 333 ~a~-~~~L~~e~~~~l~~~~~~ 353 (365)
+++ .++|++++++.|+++.++
T Consensus 313 ~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 313 QALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred hhhcCCCCCHHHHHHHHHhhCc
Confidence 998 479999999999998754
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1e-59 Score=447.72 Aligned_cols=295 Identities=27% Similarity=0.400 Sum_probs=248.7
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 017861 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (365)
Q Consensus 38 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (365)
||+||+||++||+||||||.+.+. ..+++++.++|++|+++|||+||||++||.|.| |++||+||
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~---------~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~s------E~~lG~~l 65 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGG---------QISDEMAEQLLTLAYENGINLFDTAEVYAAGKA------EVVLGNIL 65 (317)
T ss_pred CcccCCCCCeecceeecCCccCCC---------CCCHHHHHHHHHHHHHcCCCeEECccccCCCcc------HHHHHHHH
Confidence 588999999999999999974221 135688999999999999999999999999888 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCC-----CCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCC---CChHHHHHHHHHHHHcCC
Q 017861 118 KERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLAGI---WGNEGFIDGLGDAVEQGL 189 (365)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~-----~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~---~~~~~~~~~l~~l~~~G~ 189 (365)
+.... +|++++|+||++.. ..+++++.+++++++||+||||||||+|++|.+ .+.+++|++|++|+++||
T Consensus 66 ~~~~~--~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 66 KKKGW--RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGM 143 (317)
T ss_pred HhcCC--CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 86421 28999999998532 134679999999999999999999999999764 357899999999999999
Q ss_pred cCEEeecCCCHHHHHHHHHHHHhcC-CceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCCCCCCC
Q 017861 190 VKAVGVSNYSEKRLRNAYEKLKKRG-IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPP 268 (365)
Q Consensus 190 ir~iGvS~~~~~~l~~~~~~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~ 268 (365)
||+||||||+.++++++...+...+ ++++++|++||+++++..+.+++++|+++||++++|+||++|+|++++.... |
T Consensus 144 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~-~ 222 (317)
T TIGR01293 144 AMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGI-P 222 (317)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCC-C
Confidence 9999999999999988877666555 5789999999999987544469999999999999999999999999986542 2
Q ss_pred CCCCCC-----CCch----HHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhhCC-
Q 017861 269 TGPRGR-----IYTA----EYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGW- 337 (365)
Q Consensus 269 ~~~~~~-----~~~~----~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~~~- 337 (365)
.+.+.. ++.. .......+.++.++++|+++|+|++|+||+|++++|.+ ++|+|+++++|+++|+++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~ 302 (317)
T TIGR01293 223 PYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVL 302 (317)
T ss_pred CcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhcc
Confidence 222211 1111 11223456678899999999999999999999999887 899999999999999999987
Q ss_pred -CCCHHHHHHHHHh
Q 017861 338 -RLTDEEVNELRSM 350 (365)
Q Consensus 338 -~L~~e~~~~l~~~ 350 (365)
+||+++++.|+++
T Consensus 303 ~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 303 PKLSSSIIHEIDSI 316 (317)
T ss_pred CCCCHHHHHHHHhh
Confidence 9999999999875
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=3.6e-59 Score=449.10 Aligned_cols=297 Identities=26% Similarity=0.380 Sum_probs=252.2
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCC-------CCCCCCCc
Q 017861 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS-------RASFGAIN 108 (365)
Q Consensus 36 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-------g~s~~~~~ 108 (365)
|+||+||+||++||+||||||+||.. .+++++.++|+.|+++||||||||+.||. |.|
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~----------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~s----- 65 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ----------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT----- 65 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC----------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCch-----
Confidence 78999999999999999999998753 34688999999999999999999999984 656
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEecCCCCC----------CCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCC------
Q 017861 109 SETLLGRFIKERKQRDPEVEVTVATKFAALP----------WRLGRQSVLAALKDSLFRLGLSSVELYQLAGIW------ 172 (365)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~----------~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~------ 172 (365)
|+.||++|+... +|++++|+||++... .+++++.+++++++||+|||+||||||++|.+.
T Consensus 66 -E~~iG~aL~~~~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~ 141 (346)
T PRK10625 66 -ETYIGNWLAKRG---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCF 141 (346)
T ss_pred -HHHHHHHHhhcC---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccc
Confidence 999999998643 279999999985311 146799999999999999999999999997531
Q ss_pred --------------ChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCC-ceeeeeeecccccCCcccccHH
Q 017861 173 --------------GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVK 237 (365)
Q Consensus 173 --------------~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~ 237 (365)
+.+++|++|++|+++||||+||+|||+.+++++++..+...+. .+.++|++||++++..+. +++
T Consensus 142 ~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~-~ll 220 (346)
T PRK10625 142 GKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEV-GLA 220 (346)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchh-HHH
Confidence 3579999999999999999999999999999988776655543 488999999999987543 599
Q ss_pred HHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCC---CchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 017861 238 AACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRI---YTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQD 314 (365)
Q Consensus 238 ~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~ 314 (365)
++|+++||++++|+||++|+|++++.....|.+.+... |.+.......+.++.+.++|+++|+|++|+||+|++++|
T Consensus 221 ~~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~ 300 (346)
T PRK10625 221 EVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQP 300 (346)
T ss_pred HHHHHcCCeEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999886544333322111 211112335567789999999999999999999999999
Q ss_pred Cc-EEeecCCCHHHHHHHHhhhCCCCCHHHHHHHHHhhh
Q 017861 315 NV-VPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSMAS 352 (365)
Q Consensus 315 ~v-~~i~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 352 (365)
.| ++|+|+++++||++|+++++++|++++++.|+++.+
T Consensus 301 ~v~~~I~G~~~~~~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 301 FVASTLLGATTMEQLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred CCeeEEeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 87 789999999999999999999999999999999975
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.1e-59 Score=427.40 Aligned_cols=260 Identities=32% Similarity=0.537 Sum_probs=233.6
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHH
Q 017861 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (365)
Q Consensus 36 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (365)
|.+.+|++ |.+||.||||||++++. +.+.+.+.+|++.|+|+||||..||+ |+.+|+
T Consensus 3 ~~~~~l~~-g~~iP~iGlGt~~~~~~-------------~~~~~av~~Al~~Gyr~IDTA~~Ygn---------E~~VG~ 59 (280)
T COG0656 3 KTKVTLNN-GVEIPAIGLGTWQIGDD-------------EWAVRAVRAALELGYRLIDTAEIYGN---------EEEVGE 59 (280)
T ss_pred CceeecCC-CCcccCcceEeeecCCc-------------hhHHHHHHHHHHhCcceEecHhHhcC---------HHHHHH
Confidence 45678887 78899999999998764 34889999999999999999999997 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCC-----hHHHHHHHHHHHHcCCc
Q 017861 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGIWG-----NEGFIDGLGDAVEQGLV 190 (365)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~-----~~~~~~~l~~l~~~G~i 190 (365)
++++.. .+|+++||+||++. ..++++.+.+++++||+|||+||+|||++|.+.+ .+++|++|++++++|+|
T Consensus 60 aI~~s~--v~ReelFittKvw~--~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~i 135 (280)
T COG0656 60 AIKESG--VPREELFITTKVWP--SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLI 135 (280)
T ss_pred HHHhcC--CCHHHeEEEeecCC--ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCc
Confidence 999833 46999999999986 5678999999999999999999999999985532 46999999999999999
Q ss_pred CEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCCCCCCCCC
Q 017861 191 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTG 270 (365)
Q Consensus 191 r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~ 270 (365)
|+||||||+.++++++++.+ ++.|.+||++||++.++.+ ++++|+++||.++||+||+.|..
T Consensus 136 r~IGVSNF~~~~L~~l~~~~---~~~p~~NQIe~hp~~~q~e---l~~~~~~~gI~v~AysPL~~g~~------------ 197 (280)
T COG0656 136 RAIGVSNFGVEHLEELLSLA---KVKPAVNQIEYHPYLRQPE---LLPFCQRHGIAVEAYSPLAKGGK------------ 197 (280)
T ss_pred cEEEeeCCCHHHHHHHHHhc---CCCCceEEEEeccCCCcHH---HHHHHHHcCCEEEEECCcccccc------------
Confidence 99999999999999998873 3789999999999999876 99999999999999999997531
Q ss_pred CCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcEEeecCCCHHHHHHHHhhhCCCCCHHHHHHHHHh
Q 017861 271 PRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSM 350 (365)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v~~i~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~ 350 (365)
++..+ .+.+||++||.|++|++|+|+++++ +++||.+++++|++||++++++.||+|||+.|+++
T Consensus 198 ----l~~~~----------~l~~Ia~k~g~t~AQv~L~W~i~~g-v~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l 262 (280)
T COG0656 198 ----LLDNP----------VLAEIAKKYGKTPAQVALRWHIQRG-VIVIPKSTTPERIRENLAAFDFELSEEDMAAIDAL 262 (280)
T ss_pred ----cccCh----------HHHHHHHHhCCCHHHHHHHHHHhCC-cEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhh
Confidence 12222 8999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhccC
Q 017861 351 ASEIK 355 (365)
Q Consensus 351 ~~~~~ 355 (365)
.....
T Consensus 263 ~~~~~ 267 (280)
T COG0656 263 DRGYG 267 (280)
T ss_pred ccccC
Confidence 87663
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2e-57 Score=431.50 Aligned_cols=288 Identities=23% Similarity=0.330 Sum_probs=242.4
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 017861 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (365)
Q Consensus 38 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (365)
||+||+||++||+||||||+||.. |+ ..+++++.++|++|+++|||+||||+.||+|.| |+.||++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~--~~-----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s------E~~lG~al 67 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV--FG-----PVSEEDAIASVREAFRLGINFFDTSPYYGGTLS------EKVLGKAL 67 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC--CC-----CCCHHHHHHHHHHHHHcCCCEEECcCccCCCch------HHHHHHHH
Confidence 689999999999999999998863 33 356789999999999999999999999999988 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCCC--CCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCC------ChHHHHHHHHHHHHcCC
Q 017861 118 KERKQRDPEVEVTVATKFAALP--WRLGRQSVLAALKDSLFRLGLSSVELYQLAGIW------GNEGFIDGLGDAVEQGL 189 (365)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~~--~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~------~~~~~~~~l~~l~~~G~ 189 (365)
++.+. +|+++||+||++..+ .+++++.+++++++||++||+||||+|++|.+. +.+++|++|++|+++||
T Consensus 68 ~~~~~--~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 68 KALGI--PREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGK 145 (314)
T ss_pred HhCCC--CcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCC
Confidence 87532 289999999998532 357899999999999999999999999998641 24689999999999999
Q ss_pred cCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCCCCCCCC
Q 017861 190 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPT 269 (365)
Q Consensus 190 ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~ 269 (365)
||+||+|||++++++.+........+.+..+|+.||+.++..+ +++++|+++||++++|+||++|+|+++......+
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~- 222 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLE--DLLPYLKSKGVGVISASPLAMGLLTENGPPEWHP- 222 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHH--HHHHHHHHcCceEEEechhhccccCCCCCCCCCC-
Confidence 9999999999999887776433222345557899998876443 6999999999999999999999999864221110
Q ss_pred CCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhhC----CCCCHHHH
Q 017861 270 GPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALG----WRLTDEEV 344 (365)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~~----~~L~~e~~ 344 (365)
. .....+.++.++++|+++++|++|+||+|++++|.| ++|+|+++++|+++|+++++ .+|+++++
T Consensus 223 -------~---~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~ 292 (314)
T PLN02587 223 -------A---PPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELL 292 (314)
T ss_pred -------C---CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHH
Confidence 0 123456677889999999999999999999999987 79999999999999999986 37999999
Q ss_pred HHHHHhhhc
Q 017861 345 NELRSMASE 353 (365)
Q Consensus 345 ~~l~~~~~~ 353 (365)
++|+++...
T Consensus 293 ~~l~~~~~~ 301 (314)
T PLN02587 293 SEVEAILAP 301 (314)
T ss_pred HHHHHhhcc
Confidence 999988753
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.6e-54 Score=406.27 Aligned_cols=277 Identities=42% Similarity=0.664 Sum_probs=243.3
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 017861 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (365)
Q Consensus 38 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (365)
||+||+||++||+||||||.++.. + .+.+++.+++++|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~-------~--~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~s------E~~lG~al 65 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG-------Y--VDEEEAAAAVRAALDAGINFIDTADVYGDGES------EELLGEAL 65 (285)
T ss_pred CcccCCCCceecCcceeccccCCC-------C--CCHHHHHHHHHHHHHcCCCeEECccccCCCCC------HHHHHHHH
Confidence 578999999999999999988764 1 35689999999999999999999999999988 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCCC---CCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCC----hHHHHHHHHHHHHcCCc
Q 017861 118 KERKQRDPEVEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLAGIWG----NEGFIDGLGDAVEQGLV 190 (365)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~~---~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~----~~~~~~~l~~l~~~G~i 190 (365)
++.+ +|++++|+||++... ...+++.+++++++||++||+||||+|+||++.. ..++|++|++++++|+|
T Consensus 66 ~~~~---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 66 KERG---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred hccC---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9875 289999999998643 2368999999999999999999999999976422 68999999999999999
Q ss_pred CEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCCCCCCCCC
Q 017861 191 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTG 270 (365)
Q Consensus 191 r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~ 270 (365)
|+||||||+++.++++++.+ ..+|+++|++||++++..+. +++++|+++||++++|+||++|.|++++.....+..
T Consensus 143 r~iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~ 218 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPE 218 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceecCCCCCCCCCCh
Confidence 99999999999999987765 36799999999999998754 599999999999999999999999876554322110
Q ss_pred CCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhhCCCCCHHHHHHHHH
Q 017861 271 PRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGWRLTDEEVNELRS 349 (365)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~~~~L~~e~~~~l~~ 349 (365)
......+..++++++.+++|+||+|++++|.+ ++|+|+++++|+++|+++...+|++++++.|++
T Consensus 219 --------------~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 219 --------------GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred --------------hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 01345789999999999999999999999976 899999999999999999989999999999986
Q ss_pred h
Q 017861 350 M 350 (365)
Q Consensus 350 ~ 350 (365)
+
T Consensus 285 ~ 285 (285)
T cd06660 285 L 285 (285)
T ss_pred C
Confidence 3
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=8e-54 Score=402.29 Aligned_cols=264 Identities=24% Similarity=0.371 Sum_probs=227.0
Q ss_pred eecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHH
Q 017861 39 VKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK 118 (365)
Q Consensus 39 ~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~ 118 (365)
.+|+ |++||+||||||++|+..+|+. ..+++++.++|++|++.|||+||||+.||+|.+ |++||++++
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~s------E~~lg~~l~ 77 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGP----PKDRDAAIAVLREAVALGVNHIDTSDFYGPHVT------NQLIREALH 77 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCC----CCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcH------HHHHHHHHh
Confidence 3455 8999999999999987544543 235688999999999999999999999999877 999999997
Q ss_pred hccCCCCCCcEEEEecCCCC-------CCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCC--------CChHHHHHHHHH
Q 017861 119 ERKQRDPEVEVTVATKFAAL-------PWRLGRQSVLAALKDSLFRLGLSSVELYQLAGI--------WGNEGFIDGLGD 183 (365)
Q Consensus 119 ~~~~~~~R~~~~I~tK~~~~-------~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~--------~~~~~~~~~l~~ 183 (365)
.. |++++|+||++.. +...+++.+++++++||+||||||||+|++|.. .+.+++|++|++
T Consensus 78 ~~-----R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~ 152 (290)
T PRK10376 78 PY-----PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAE 152 (290)
T ss_pred cC-----CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHH
Confidence 52 7999999998642 235679999999999999999999999998541 236789999999
Q ss_pred HHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCC
Q 017861 184 AVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYT 263 (365)
Q Consensus 184 l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~ 263 (365)
|+++||||+||||||++++++++.+. .+++++|++||++++... +++++|+++||++++|+||+++..
T Consensus 153 l~~~Gkir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~--~~~~~~~~~gi~v~a~~pL~g~~~----- 220 (290)
T PRK10376 153 LQRQGLVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRADD--ALIDALARDGIAYVPFFPLGGFTP----- 220 (290)
T ss_pred HHHCCceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCChH--HHHHHHHHcCCEEEEeecCCCCCh-----
Confidence 99999999999999999999988776 468999999999997643 599999999999999999974300
Q ss_pred CCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-CcEEeecCCCHHHHHHHHhhhCCCCCHH
Q 017861 264 PQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQD-NVVPIPGAKNAEQAAEFAGALGWRLTDE 342 (365)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~-~v~~i~g~~~~~~l~en~~a~~~~L~~e 342 (365)
+ ..+.+.++|+++++|++|+||+|+++++ .+++|+|+++++|+++|+++++++|+++
T Consensus 221 ------------~----------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e 278 (290)
T PRK10376 221 ------------L----------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEE 278 (290)
T ss_pred ------------h----------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHH
Confidence 0 0237889999999999999999999875 4489999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 017861 343 EVNELRSMASE 353 (365)
Q Consensus 343 ~~~~l~~~~~~ 353 (365)
+++.|+++.++
T Consensus 279 ~~~~l~~~~~~ 289 (290)
T PRK10376 279 VLAELDGIARE 289 (290)
T ss_pred HHHHHHHHHhc
Confidence 99999998653
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.3e-53 Score=399.66 Aligned_cols=274 Identities=35% Similarity=0.556 Sum_probs=225.5
Q ss_pred cceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcE
Q 017861 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEV 129 (365)
Q Consensus 50 ~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~ 129 (365)
+||||||++|.. ..+++++.++|+.|++.|||+||||+.||+|.+ |+.||++|++.. .+|+++
T Consensus 1 ~l~lG~~~~~~~---------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~s------E~~lg~~l~~~~--~~r~~~ 63 (283)
T PF00248_consen 1 PLGLGTWRLGGE---------RVSEEEAEAILRRALEAGINFFDTADSYGNGRS------ERILGRALRKSR--VPRDDI 63 (283)
T ss_dssp SBEEECTTBTTT---------TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTH------HHHHHHHHHHTS--STGGGS
T ss_pred CEEEEccccCCC---------CCCHHHHHHHHHHHHHcCCCeeccccccccccc------cccccccccccc--cccccc
Confidence 689999998762 367899999999999999999999999999887 999999999932 238999
Q ss_pred EEEecCC---CCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCC---CC-hHHHHHHHHHHHHcCCcCEEeecCCCHHH
Q 017861 130 TVATKFA---ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGI---WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 202 (365)
Q Consensus 130 ~I~tK~~---~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~---~~-~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 202 (365)
+|+||+. .....++++.+++++++||++||+||||+|+||++ .. .+++|++|++|+++|+||+||||||+++.
T Consensus 64 ~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 143 (283)
T PF00248_consen 64 FISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQ 143 (283)
T ss_dssp EEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHH
T ss_pred cccccccccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccc
Confidence 9999991 12356889999999999999999999999999754 34 78899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCchHHHh
Q 017861 203 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLR 282 (365)
Q Consensus 203 l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~ 282 (365)
++.+ .....++|+++|++||++++.... +++++|+++||++++|+|+++|+|++++....++........
T Consensus 144 l~~~---~~~~~~~~~~~q~~~n~~~~~~~~-~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~------ 213 (283)
T PF00248_consen 144 LEAA---LKIGSIPPDVVQINYNLLNRREEE-GLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRD------ 213 (283)
T ss_dssp HHHH---HTCTSS-ESEEEEE-BTTBHBGGH-HHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSST------
T ss_pred cccc---cccccccccccccccccccccccc-cccccccccccccccccccccCccccccccCCCcccccccch------
Confidence 8888 223337899999999999554443 699999999999999999999999998876554332211111
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhhCCCCCHHHHHHHHHhh
Q 017861 283 NLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSMA 351 (365)
Q Consensus 283 ~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~~ 351 (365)
..+..+.+.++++++|.|++|+||+|+++++.+ ++|+|+++++|+++|+++++.+||++++++|+++.
T Consensus 214 -~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 214 -AQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp -HGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred -hhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 334456899999999999999999999999877 99999999999999999999999999999999875
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.2e-53 Score=389.44 Aligned_cols=262 Identities=29% Similarity=0.437 Sum_probs=231.0
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 017861 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (365)
Q Consensus 38 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (365)
+.+|.+ |.++|.||||||+. +++++.+.++.|++.||||||||..||+ |+.+|++|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~--------------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N---------E~evG~ai 61 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQS--------------PPGQVAEAVKAAIKAGYRHIDTAHVYGN---------EKEVGEAI 61 (300)
T ss_pred eEeccC-CCccceeeeEeccc--------------ChhhHHHHHHHHHHhCcceeechhhhCC---------hHHHHHHH
Confidence 677886 99999999999972 2478999999999999999999999999 99999999
Q ss_pred Hhcc--CCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCC-------------------ChHH
Q 017861 118 KERK--QRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGIW-------------------GNEG 176 (365)
Q Consensus 118 ~~~~--~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~-------------------~~~~ 176 (365)
++.- ...+|+++||+||+|. ..+.++.++.++++||++||+||+|||++|.+. +..+
T Consensus 62 k~~i~~~~v~RediFiTSKlw~--~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 62 KELLAEGGVKREDIFITSKLWP--TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred HHHhhhCCcchhhheeeeccCc--cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 9653 2236999999999976 457899999999999999999999999995431 2457
Q ss_pred HHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccc
Q 017861 177 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 177 ~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
+|++||+++++|+||+||||||+..++++++..++ ++|.++|+++|++.++.. ++++|+++||.|.||+||+.+
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~k---i~P~vnQvE~HP~~~Q~~---L~~fCk~~~I~v~AYSpLg~~ 213 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAK---IKPAVNQVECHPYLQQKK---LVEFCKSKGIVVTAYSPLGSP 213 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCC---CCCccceeeccCCcChHH---HHHHHhhCCcEEEEecCCCCC
Confidence 99999999999999999999999999999988864 889999999999887654 999999999999999999987
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcEEeecCCCHHHHHHHHhhhC
Q 017861 257 ALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGALG 336 (365)
Q Consensus 257 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v~~i~g~~~~~~l~en~~a~~ 336 (365)
-- + ..++..+ .+.+||++|+.|++|++|||.++++ ++|||.++|+++++||++.++
T Consensus 214 ~~-~------------~~ll~~~----------~l~~iA~K~~kt~aQIlLrw~~q~g-~~vipKS~~~~Ri~eN~~vfd 269 (300)
T KOG1577|consen 214 GR-G------------SDLLEDP----------VLKEIAKKYNKTPAQILLRWALQRG-VSVIPKSSNPERIKENFKVFD 269 (300)
T ss_pred CC-c------------cccccCH----------HHHHHHHHhCCCHHHHHHHHHHhCC-cEEEeccCCHHHHHHHHhhcc
Confidence 22 0 0122222 8999999999999999999999998 899999999999999999999
Q ss_pred CCCCHHHHHHHHHhhhccC
Q 017861 337 WRLTDEEVNELRSMASEIK 355 (365)
Q Consensus 337 ~~L~~e~~~~l~~~~~~~~ 355 (365)
+.||++|++.|++...+.+
T Consensus 270 f~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 270 FELTEEDMKKLDSLNSNER 288 (300)
T ss_pred ccCCHHHHHHHhhccccce
Confidence 9999999999998876665
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=6.1e-53 Score=391.77 Aligned_cols=249 Identities=25% Similarity=0.369 Sum_probs=218.5
Q ss_pred cccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 017861 46 LKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (365)
Q Consensus 46 ~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~ 125 (365)
++||+||||||+++. +++.++++.|++.|||+||||+.||+ |+.||++|++... +
T Consensus 1 ~~vs~lglGt~~~~~--------------~~~~~~i~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al~~~~~--~ 55 (267)
T PRK11172 1 MSIPAFGLGTFRLKD--------------QVVIDSVKTALELGYRAIDTAQIYDN---------EAAVGQAIAESGV--P 55 (267)
T ss_pred CCCCCEeeEccccCh--------------HHHHHHHHHHHHcCCCEEEccchhCC---------HHHHHHHHHHcCC--C
Confidence 369999999997642 67899999999999999999999995 9999999986432 3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCC-----CChHHHHHHHHHHHHcCCcCEEeecCCCH
Q 017861 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGI-----WGNEGFIDGLGDAVEQGLVKAVGVSNYSE 200 (365)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~-----~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 200 (365)
|+++||+||++. ...+++.+++++++||+|||+||||+|++|.+ .+.+++|++|++|+++||||+||||||+.
T Consensus 56 R~~v~i~TK~~~--~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 133 (267)
T PRK11172 56 RDELFITTKIWI--DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTI 133 (267)
T ss_pred hhHeEEEEEeCC--CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCH
Confidence 899999999864 35679999999999999999999999999754 24578999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCchHH
Q 017861 201 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEY 280 (365)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~ 280 (365)
++++++++.+. ..+++++|++||++++.. +++++|+++||++++|+||++|.+.. .
T Consensus 134 ~~l~~~~~~~~--~~~~~~~Q~~~~~~~~~~---~ll~~~~~~gi~v~a~spl~~G~~~~-----------------~-- 189 (267)
T PRK11172 134 ALMKQAIAAVG--AENIATNQIELSPYLQNR---KVVAFAKEHGIHVTSYMTLAYGKVLK-----------------D-- 189 (267)
T ss_pred HHHHHHHHhcC--CCCCeEEeeecCCCCCcH---HHHHHHHHCCCEEEEECCCCCCcccC-----------------C--
Confidence 99998876532 126899999999998752 59999999999999999999985421 1
Q ss_pred HhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcEEeecCCCHHHHHHHHhhhCCCCCHHHHHHHHHhhhcc
Q 017861 281 LRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSMASEI 354 (365)
Q Consensus 281 ~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v~~i~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~~ 354 (365)
..+.++|+++|.|++|+||+|+++++ +++|+|+++++|+++|+++++++||++++++|+++.++.
T Consensus 190 --------~~l~~~a~~~~~s~aqval~w~l~~~-~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~ 254 (267)
T PRK11172 190 --------PVIARIAAKHNATPAQVILAWAMQLG-YSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNG 254 (267)
T ss_pred --------HHHHHHHHHhCCCHHHHHHHHHHhCC-CEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCC
Confidence 16889999999999999999999997 789999999999999999999999999999999997543
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=5.7e-53 Score=396.09 Aligned_cols=271 Identities=18% Similarity=0.221 Sum_probs=222.9
Q ss_pred CcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCC
Q 017861 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (365)
Q Consensus 45 g~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~ 124 (365)
+++||+||||||+||+...|....++.++++++.++|+.|++.||||||||+.||. | |++||++|+...
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--S------E~~lG~al~~~~--- 70 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR--A------ETVLGQLIPRPV--- 70 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh--H------HHHHhhhhccCC---
Confidence 68899999999999863111111133467899999999999999999999999973 4 999999997521
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCC----h-HHHHHHHHHHHHcCCcCEEeecCCC
Q 017861 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGIWG----N-EGFIDGLGDAVEQGLVKAVGVSNYS 199 (365)
Q Consensus 125 ~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~----~-~~~~~~l~~l~~~G~ir~iGvS~~~ 199 (365)
|++++|+||. .+.+++.+++++++||+|||+||||+|++|.+.+ . +++|++|++|+++||||+||||||+
T Consensus 71 -~~~~~i~tk~----~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 71 -PFRVTLSTVR----ADRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred -ceEeeccccc----ccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccC
Confidence 4679999986 3457899999999999999999999999986422 2 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCchH
Q 017861 200 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAE 279 (365)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~ 279 (365)
++++.++... .+|+++|++||+++++.+..+++++|+++||++++|+||++|+|++.... .+ .
T Consensus 146 ~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~--~~----------~ 208 (292)
T PRK14863 146 SDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDR--VP----------A 208 (292)
T ss_pred HHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCccc--Cc----------c
Confidence 9988876543 57999999999999876434699999999999999999999999742110 00 0
Q ss_pred HHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhhCCCCCHHHHHHHH
Q 017861 280 YLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGWRLTDEEVNELR 348 (365)
Q Consensus 280 ~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~~~~L~~e~~~~l~ 348 (365)
.+......+..+.+++.++++|++|+||+|++++|.| ++|+|+++++|+++|+++.+.+++++.+++|.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 209 QLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred chhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 1112234456778888889999999999999999988 89999999999999999999899988887764
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=4e-51 Score=380.89 Aligned_cols=256 Identities=25% Similarity=0.405 Sum_probs=222.4
Q ss_pred eecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHH
Q 017861 39 VKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK 118 (365)
Q Consensus 39 ~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~ 118 (365)
.+|. +|+.||+||||||+++ .+++.++|++|++.|||+||||+.||+ |+.||+||+
T Consensus 7 ~~l~-~g~~v~~lglG~~~~~--------------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al~ 62 (275)
T PRK11565 7 IKLQ-DGNVMPQLGLGVWQAS--------------NEEVITAIHKALEVGYRSIDTAAIYKN---------EEGVGKALK 62 (275)
T ss_pred EEcC-CCCccCCcceECccCC--------------HHHHHHHHHHHHHhCCCEEEchhhhCC---------HHHHHHHHH
Confidence 5564 6999999999999752 378999999999999999999999985 999999998
Q ss_pred hccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCC----ChHHHHHHHHHHHHcCCcCEEe
Q 017861 119 ERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGIW----GNEGFIDGLGDAVEQGLVKAVG 194 (365)
Q Consensus 119 ~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~----~~~~~~~~l~~l~~~G~ir~iG 194 (365)
+... +|++++|+||++ ..+++.+++++++||+|||+||||+|++|.+. +..++|++|++|+++|+||+||
T Consensus 63 ~~~~--~R~~~~i~tK~~----~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iG 136 (275)
T PRK11565 63 EASV--AREELFITTKLW----NDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIG 136 (275)
T ss_pred HcCC--CHHHEEEEEEec----CcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEe
Confidence 7532 379999999984 34678999999999999999999999997542 2579999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCC
Q 017861 195 VSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGR 274 (365)
Q Consensus 195 vS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~ 274 (365)
||||+++++++++.. .++++.++|++||++.+.. +++++|+++||++++|+||++|.. .
T Consensus 137 vSn~~~~~l~~~~~~---~~v~~~~~Q~~~~~~~~~~---~~~~~~~~~~i~~~a~spl~~G~~---------------~ 195 (275)
T PRK11565 137 VCNFQIHHLQRLIDE---TGVTPVINQIELHPLMQQR---QLHAWNATHKIQTESWSPLAQGGK---------------G 195 (275)
T ss_pred eccCCHHHHHHHHHh---CCCCceeeeeecCCccchH---HHHHHHHHCCCEEEEEccCCCCCc---------------c
Confidence 999999999988643 3367899999999998753 499999999999999999997721 0
Q ss_pred CCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcEEeecCCCHHHHHHHHhhhCCCCCHHHHHHHHHhhhcc
Q 017861 275 IYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSMASEI 354 (365)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v~~i~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~~ 354 (365)
.+.. +.+.++|+++|+|++|+||+|+++++ +++|||+++++|+++|+++++++|+++++++|+++....
T Consensus 196 ~~~~----------~~l~~ia~~~g~s~aq~aL~w~l~~~-~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 196 VFDQ----------KVIRDLADKYGKTPAQIVIRWHLDSG-LVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred cccC----------HHHHHHHHHhCCCHHHHHHHHHHcCC-CEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 1111 27889999999999999999999997 679999999999999999999999999999999998766
Q ss_pred CC
Q 017861 355 KP 356 (365)
Q Consensus 355 ~~ 356 (365)
+.
T Consensus 265 ~~ 266 (275)
T PRK11565 265 RL 266 (275)
T ss_pred Cc
Confidence 54
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=7.1e-52 Score=362.41 Aligned_cols=278 Identities=23% Similarity=0.412 Sum_probs=248.2
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHH
Q 017861 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (365)
Q Consensus 36 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (365)
|++.+++..|+.+|+|.+|+|++.. |+ ++.++...+++.|+|.|||+||-|+.||++++ |+++|.
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d---~~------~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~c------E~~fg~ 65 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND---WN------MSARELLSFIETALELGITTFDHADIYGGYQC------EALFGE 65 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh---cc------CCHHHHHHHHHHHHHcCcccchhhhhcCCccH------HHHHHH
Confidence 7899999999999999999999876 33 45589999999999999999999999999998 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCC----------CCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCC---CChHHHHHHHH
Q 017861 116 FIKERKQRDPEVEVTVATKFAAL----------PWRLGRQSVLAALKDSLFRLGLSSVELYQLAGI---WGNEGFIDGLG 182 (365)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~----------~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~---~~~~~~~~~l~ 182 (365)
+|+-.+.- |+++.|+||||.. .++.+.++|..|+|+||+||+|||+|++++|.+ .+.+++.+++.
T Consensus 66 aL~l~p~l--RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~ 143 (298)
T COG4989 66 ALKLAPGL--REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFT 143 (298)
T ss_pred HHhcChhh--hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHH
Confidence 99987754 8999999999962 367899999999999999999999999999543 56899999999
Q ss_pred HHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCC
Q 017861 183 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 262 (365)
Q Consensus 183 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~ 262 (365)
.|++.||||++|||||++.+++.+.+... .++.+||+++|+++......+.+++|+++.|.+++||||++|-+
T Consensus 144 ~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~---- 216 (298)
T COG4989 144 HLHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGL---- 216 (298)
T ss_pred HHHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcc----
Confidence 99999999999999999999999887754 45899999999999988878899999999999999999999843
Q ss_pred CCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhhCCCCC
Q 017861 263 TPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS-KTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGWRLT 340 (365)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~-~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~~~~L~ 340 (365)
|.. .++.+++.+.+..||.++| .|..+++++|++.+|.- .||+|+.+++++++.++|++..||
T Consensus 217 -------------F~g--~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~Lt 281 (298)
T COG4989 217 -------------FLG--DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLT 281 (298)
T ss_pred -------------ccC--CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhcccc
Confidence 221 1224455678999999999 79999999999999954 899999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 017861 341 DEEVNELRSMAS 352 (365)
Q Consensus 341 ~e~~~~l~~~~~ 352 (365)
.++|-+|.....
T Consensus 282 RqqWf~Iy~Aa~ 293 (298)
T COG4989 282 RQQWFEIYTAAI 293 (298)
T ss_pred HHHHHHHHHHhc
Confidence 999999988763
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.2e-49 Score=350.77 Aligned_cols=276 Identities=20% Similarity=0.264 Sum_probs=240.0
Q ss_pred cceeeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHH
Q 017861 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG 114 (365)
Q Consensus 35 ~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG 114 (365)
.|+||.+|+||++||+||||+..++.. +.+.++++....+..|+.+|||+|||++.||+++| |+.+|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~-------fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~s------e~~lg 87 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQL-------FGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRS------EEGLG 87 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhh-------cCCcchhhhHHHHHHHHHccccceecCcccCcchh------HHHHH
Confidence 699999999999999999999999886 44467788888888899999999999999999998 99999
Q ss_pred HHHHhccCCCCCCcEEEEecCCCC------CCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCC-------ChHHHHHHH
Q 017861 115 RFIKERKQRDPEVEVTVATKFAAL------PWRLGRQSVLAALKDSLFRLGLSSVELYQLAGIW-------GNEGFIDGL 181 (365)
Q Consensus 115 ~al~~~~~~~~R~~~~I~tK~~~~------~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~-------~~~~~~~~l 181 (365)
.++++.| |+.+||+||+|.. -++++++.+++++++||+||++||+|++++||.. ...|++.+|
T Consensus 88 ~al~~vP----R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~L 163 (342)
T KOG1576|consen 88 LALKDVP----REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPAL 163 (342)
T ss_pred HHHhhCC----hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHH
Confidence 9999987 9999999999973 2678999999999999999999999999998751 257999999
Q ss_pred HHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeee--eecccccCCcccccHHHHHHHhCCeEEEeccccccccc
Q 017861 182 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ--VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALT 259 (365)
Q Consensus 182 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q--~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~ 259 (365)
+++|++||||+|||+.++.+.+.++.+. ....++++- .+|++.+.... ..+++.+.+|++|+.-++++.|+|+
T Consensus 164 e~lk~~Gk~RfiGitgypldvl~~~ae~---~~G~~dvvlsY~ry~l~d~tLl--~~~~~~~sk~vgVi~AsalsmgLLt 238 (342)
T KOG1576|consen 164 EELKQEGKIRFIGITGYPLDVLTECAER---GKGRLDVVLSYCRYTLNDNTLL--RYLKRLKSKGVGVINASALSMGLLT 238 (342)
T ss_pred HHHHhcCceeEeeecccchHHHHHHHhc---CCCceeeehhhhhhccccHHHH--HHHHHHHhcCceEEehhhHHHHHhh
Confidence 9999999999999999999999988644 113466665 78887776554 4788999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhhCCC
Q 017861 260 GKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGWR 338 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~~~~ 338 (365)
.+-.++++|.++. ..+...+..++|.+.|+..+.+|+.|.++.+++ ++++|+++.++++.|+++....
T Consensus 239 ~~gp~~wHPaS~E-----------lk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ 307 (342)
T KOG1576|consen 239 NQGPPPWHPASDE-----------LKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDR 307 (342)
T ss_pred cCCCCCCCCCCHH-----------HHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhcc
Confidence 8877777765442 444555778899999999999999999999988 8999999999999999987667
Q ss_pred CCHHH
Q 017861 339 LTDEE 343 (365)
Q Consensus 339 L~~e~ 343 (365)
||..+
T Consensus 308 ls~~~ 312 (342)
T KOG1576|consen 308 LSSKH 312 (342)
T ss_pred ccchh
Confidence 88733
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.6e-47 Score=352.72 Aligned_cols=279 Identities=22% Similarity=0.306 Sum_probs=240.2
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHH
Q 017861 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (365)
Q Consensus 36 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (365)
|.||++|+||.++|.||||||++... |. +..+++.+.++|++|+++|||+||||..|..|.| |..||+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~----~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~s------E~~lgk 68 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ----GSIDEENANETIDYAIEHGINYIDTAWPYHGGES------EEFLGK 68 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC----CCccHHHHHHHHHHHHHcCCceEeecccccCCCc------hHHHHH
Confidence 89999999999999999999998765 33 3467899999999999999999999999988887 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCC-------hHHHHHHHHHHHHcC
Q 017861 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGIWG-------NEGFIDGLGDAVEQG 188 (365)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~-------~~~~~~~l~~l~~~G 188 (365)
+|++.. |++|.++||+... ..-+++.+++-++++|++||+||+|+|+||.... ..+.++.++++|++|
T Consensus 69 aL~~~~----Rekv~LaTKlp~~-~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eG 143 (391)
T COG1453 69 ALKDGY----REKVKLATKLPSW-PVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEG 143 (391)
T ss_pred Hhhhcc----cceEEEEeecCCc-cccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcC
Confidence 999976 8999999999653 2357899999999999999999999999986522 124688899999999
Q ss_pred CcCEEeecCC-CHHHHHHHHHHHHhcCCceeeeeeecccccCCccc-ccHHHHHHHhCCeEEEecccccccccCCCCCCC
Q 017861 189 LVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQGALTGKYTPQN 266 (365)
Q Consensus 189 ~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~ 266 (365)
+||++|+|.| +.+.+.+++.. .+++++|++||.+++.... .+.+++|.++|++|+.++|+.+|-|..+
T Consensus 144 kIr~~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~----- 213 (391)
T COG1453 144 KIRNAGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN----- 213 (391)
T ss_pred cEEEeeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----
Confidence 9999999999 56778888876 6799999999999976442 1489999999999999999999976531
Q ss_pred CCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhhCC--C-CC
Q 017861 267 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS--KTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGW--R-LT 340 (365)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~--~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~~~--~-L~ 340 (365)
.|+ ++.+|+.+.. .||+..|+||++++|.| ++++|+++++|++||++.++. | ||
T Consensus 214 ----------vP~----------~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lt 273 (391)
T COG1453 214 ----------VPE----------KLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLT 273 (391)
T ss_pred ----------CCH----------HHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccC
Confidence 122 7888888874 78999999999999999 899999999999999999964 4 99
Q ss_pred HHHHHHHHHhhhccCCCCCCC
Q 017861 341 DEEVNELRSMASEIKPVVSFP 361 (365)
Q Consensus 341 ~e~~~~l~~~~~~~~~~~~~p 361 (365)
++|+..|.++.+..+...+.|
T Consensus 274 e~e~~il~~v~~~~~~~~~v~ 294 (391)
T COG1453 274 EEELQILEKVEEIYRESLKVP 294 (391)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 999999999887666554443
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.98 E-value=1.5e-05 Score=70.59 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEec
Q 017861 175 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 251 (365)
Q Consensus 175 ~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~ 251 (365)
.++|+.||+++.+|+|..||||.|+..+|+++++.+. +.|..+|++..-.+.-+- ++.++|..++|.+..++
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cCvvPp--dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCCVVPP--DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccccCCH--HHHHHhhhcceeeeecC
Confidence 4789999999999999999999999999999999876 889999999887775443 59999999999998764
No 19
>PRK13796 GTPase YqeH; Provisional
Probab=90.21 E-value=4.3 Score=39.51 Aligned_cols=141 Identities=20% Similarity=0.198 Sum_probs=90.8
Q ss_pred ccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCC---CCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 017861 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (365)
Q Consensus 49 s~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~G---in~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~ 125 (365)
..+|-=|.++-. |+......+++++..++++...+.- +-.+|..+.-+.. ...|-+.+..
T Consensus 34 ~~~C~RC~~l~h---y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~--------~~~L~~~~~~------ 96 (365)
T PRK13796 34 EVYCQRCFRLKH---YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW--------IPGLHRFVGN------ 96 (365)
T ss_pred CeEchhhhhhhc---cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCch--------hHHHHHHhCC------
Confidence 345655655432 3332223456677777888776655 5568876644432 3334343321
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEe--CCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHH
Q 017861 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQL--AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 203 (365)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l--~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 203 (365)
+.-++|.+|+--.+.....+.+++.++...+.+|....|++++ ...+..+++++.+.+..+.+.+-.+|.+|..-..|
T Consensus 97 kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 97 NPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred CCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 3578899998543333445667777777777788765677777 33456889999998888788899999999976655
Q ss_pred HHH
Q 017861 204 RNA 206 (365)
Q Consensus 204 ~~~ 206 (365)
-..
T Consensus 177 iN~ 179 (365)
T PRK13796 177 INR 179 (365)
T ss_pred HHH
Confidence 433
No 20
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=89.93 E-value=11 Score=35.80 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (365)
.++..+.++.+.+.|++.|+.-- |.... .-.+.| +++++.. . ++-|.-++. ..++.+..+ .+-+
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~--g~~~~----~d~~~v-~~lr~~~----g-~~~l~vD~n---~~~~~~~A~-~~~~ 198 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKL--GGDLE----DDIERI-RAIREAA----P-DARLRVDAN---QGWTPEEAV-ELLR 198 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe--CCChh----hHHHHH-HHHHHhC----C-CCeEEEeCC---CCcCHHHHH-HHHH
Confidence 46677788888899999998742 32100 002222 3344322 2 455666663 234454432 3334
Q ss_pred HHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcc
Q 017861 154 SLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE 232 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~ 232 (365)
.|+.++++++. ++.+ .+-++.+.+|++.-.|. ..|=+-++.+.+.++++. .-.+++|+..+.+---..
T Consensus 199 ~l~~~~l~~iE-----eP~~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~~GGi~~ 267 (316)
T cd03319 199 ELAELGVELIE-----QPVP-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMKTGGLTE 267 (316)
T ss_pred HHHhcCCCEEE-----CCCC-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccccCCHHH
Confidence 45555544432 2222 23467788888887777 344555688888877664 347888887554321111
Q ss_pred cccHHHHHHHhCCeEEEecccccc
Q 017861 233 ENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 233 ~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
...+..+|+++|+.++..+-+..+
T Consensus 268 ~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 268 ALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHHHcCCCEEEECchhhH
Confidence 224899999999999987655443
No 21
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=87.50 E-value=21 Score=32.71 Aligned_cols=157 Identities=13% Similarity=0.119 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (365)
.++..+.++.+.+.|++.|-.-- |.. . ..+...=+++++.- .+++-|.-... ..++.+...+-+ +
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKv--g~~-~----~~d~~~v~~vr~~~----g~~~~l~vDan---~~~~~~~a~~~~-~ 150 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKV--GRD-P----ARDVAVVAALREAV----GDDAELRVDAN---RGWTPKQAIRAL-R 150 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec--CCC-H----HHHHHHHHHHHHhc----CCCCEEEEeCC---CCcCHHHHHHHH-H
Confidence 35566777788899999887532 111 0 00112223444432 13555555542 234555444433 3
Q ss_pred HHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcc
Q 017861 154 SLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE 232 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~ 232 (365)
.|+.++++++. ++.+ .+-++.+.++++.-.+. ..|=+-++.+.+.++++. ..++++|+..+..---.+
T Consensus 151 ~l~~~~i~~iE-----eP~~-~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi~~ 219 (265)
T cd03315 151 ALEDLGLDYVE-----QPLP-ADDLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKTAKTGGLTK 219 (265)
T ss_pred HHHhcCCCEEE-----CCCC-cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEecccccCHHH
Confidence 44555544433 2222 13357777888776666 444555678888887665 347888887665432111
Q ss_pred cccHHHHHHHhCCeEEEecccccc
Q 017861 233 ENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 233 ~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
...+...|+++|+.++..+.+..+
T Consensus 220 ~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 220 AQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHHHcCCcEEecCccchH
Confidence 224899999999999987666544
No 22
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=86.36 E-value=17 Score=32.61 Aligned_cols=164 Identities=12% Similarity=0.107 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecc-cccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTA-EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (365)
.+.++..++++.-.+.||..|+.. +..+.. ..+.+-+..+..+ . ..+.+.+ ....+.++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~-------~~~~v~~~~~~~~----~--~~~~~~~-----~~~~~~i~~~ 72 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASED-------DFEQVRRLREALP----N--ARLQALC-----RANEEDIERA 72 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHH-------HHHHHHHHHHHHH----S--SEEEEEE-----ESCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHH-------HHHHhhhhhhhhc----c--cccceee-----eehHHHHHHH
Confidence 566888899999889999999998 333221 1345555544443 1 2333333 2446667777
Q ss_pred HHHHHHHhCCCceeEEEeCCC--------CC----hHHHHHHHHHHHHcCCcCEEeec---CCCHHHHHHHHHHHHhcCC
Q 017861 151 LKDSLFRLGLSSVELYQLAGI--------WG----NEGFIDGLGDAVEQGLVKAVGVS---NYSEKRLRNAYEKLKKRGI 215 (365)
Q Consensus 151 l~~SL~~Lg~d~iDl~~l~~~--------~~----~~~~~~~l~~l~~~G~ir~iGvS---~~~~~~l~~~~~~~~~~~~ 215 (365)
++.. ...|.|.+.++.--+. .. .+.+.+.++.+++.|....+++. .++++.+.++.+.+...|
T Consensus 73 ~~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g- 150 (237)
T PF00682_consen 73 VEAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG- 150 (237)
T ss_dssp HHHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-
T ss_pred HHhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC-
Confidence 7644 5788888887765111 11 45566777778899988888874 456777777776665554
Q ss_pred ceeeeeeecccccCCccc-ccHHHHHHHh----CCeEEEecccccc
Q 017861 216 PLASNQVNYSLIYRKPEE-NGVKAACDEL----GITLIAYCPIAQG 256 (365)
Q Consensus 216 ~~~~~q~~~n~~~~~~~~-~~~~~~~~~~----gi~v~a~~~l~~G 256 (365)
++.+.+.=+...-.+.. .+++...+++ .+++.++.-++.+
T Consensus 151 -~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla 195 (237)
T PF00682_consen 151 -ADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLA 195 (237)
T ss_dssp --SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-H
T ss_pred -CeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccch
Confidence 34444432222222221 2466666663 3556666666544
No 23
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=85.01 E-value=23 Score=32.77 Aligned_cols=135 Identities=12% Similarity=0.031 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEeCCC-CChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeee
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQLAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 220 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~-~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 220 (365)
.+.+.+.+..++. ..-|.|+||+=.=... ...+.+...++.+++.-.+ -|-+-+++++.++.+++.++ |. .-+|
T Consensus 22 ~d~~~i~~~A~~~-~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~--G~-~iIN 96 (261)
T PRK07535 22 KDAAFIQKLALKQ-AEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAK--GP-PLIN 96 (261)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCC--CC-CEEE
Confidence 3455555555554 3679999997754221 2244566666667655333 38999999999999988743 22 2222
Q ss_pred eeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017861 221 QVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 300 (365)
Q Consensus 221 q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 300 (365)
-+ |..... .+ .+++.++++|+.++...-...|. |...+...+.++.+.+.+.++|+
T Consensus 97 sI--s~~~~~-~~-~~~~l~~~~g~~vv~m~~~~~g~--------------------P~t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 97 SV--SAEGEK-LE-VVLPLVKKYNAPVVALTMDDTGI--------------------PKDAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred eC--CCCCcc-CH-HHHHHHHHhCCCEEEEecCCCCC--------------------CCCHHHHHHHHHHHHHHHHHcCC
Confidence 22 221111 11 48999999999999865433331 11111223444556666777777
Q ss_pred CHHHH
Q 017861 301 TSTQV 305 (365)
Q Consensus 301 s~~ql 305 (365)
++.++
T Consensus 153 ~~~~I 157 (261)
T PRK07535 153 PPEDI 157 (261)
T ss_pred CHhHE
Confidence 65553
No 24
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=83.79 E-value=34 Score=32.56 Aligned_cols=158 Identities=17% Similarity=0.172 Sum_probs=87.3
Q ss_pred chhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 017861 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (365)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (365)
..++.++..++++.+.+.|++.|.-. | |+..-..+-.+++- .+++... -.++.|+|-.. . +.+
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~-~i~~~~~---~~~i~itTNG~----l-----l~~ 109 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIA-ALAALPG---IRDLALTTNGY----L-----LAR 109 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHH-HHHhcCC---CceEEEEcCch----h-----HHH
Confidence 44678999999999999999887642 3 32211111123332 2333210 23677777751 1 111
Q ss_pred HHHHHHHHhCCCceeEEEeCC-----------CCChHHHHHHHHHHHHcCC----cCEEeecCCCHHHHHHHHHHHHhcC
Q 017861 150 ALKDSLFRLGLSSVELYQLAG-----------IWGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRG 214 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l~~-----------~~~~~~~~~~l~~l~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~ 214 (365)
. -..|...|.+.|- +-++. ....++++++++.+++.|. |..+.+.+.+.+++.++++.+...+
T Consensus 110 ~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 R-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred H-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 1 2334555654432 12221 1236889999999999985 2244444667788888888887666
Q ss_pred CceeeeeeecccccCCc--------ccccHHHHHHHhCCeEE
Q 017861 215 IPLASNQVNYSLIYRKP--------EENGVKAACDELGITLI 248 (365)
Q Consensus 215 ~~~~~~q~~~n~~~~~~--------~~~~~~~~~~~~gi~v~ 248 (365)
+.+ .-++|.++.... ...++++..+++++.+.
T Consensus 188 v~v--~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 188 IQL--RFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred CeE--EEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 543 334444433221 01247777777765443
No 25
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.61 E-value=10 Score=37.13 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~S 154 (365)
-....++++|++.|++++|||.+... +..+....+ +..+.+..-+|..| ..+--.+...+++-
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~---------~~~~~~~a~-------~Agit~v~~~G~dP-Gi~nv~a~~a~~~~ 141 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP---------PWKLDEEAK-------KAGITAVLGCGFDP-GITNVLAAYAAKEL 141 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch---------hhhhhHHHH-------HcCeEEEcccCcCc-chHHHHHHHHHHHh
Confidence 34458999999999999999987654 322332222 34677777777543 33433444444443
Q ss_pred HHHhCCCceeEEEe
Q 017861 155 LFRLGLSSVELYQL 168 (365)
Q Consensus 155 L~~Lg~d~iDl~~l 168 (365)
.+ .+++||+|..
T Consensus 142 ~~--~i~si~iy~g 153 (389)
T COG1748 142 FD--EIESIDIYVG 153 (389)
T ss_pred hc--cccEEEEEEe
Confidence 33 6899999999
No 26
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=82.44 E-value=33 Score=32.98 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCC-chHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI-NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~-~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (365)
.++..+.++.+.+.|++.|-.--..+.... ... .-.+.| +++++.- .+++.|..... ..++.+...+-++
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-~~~~~d~~~v-~~ir~~~----g~~~~l~vDaN---~~~~~~~a~~~~~ 210 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGG-EDLREDLARV-RAVREAV----GPDVDLMVDAN---GRWDLAEAIRLAR 210 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcch-HHHHHHHHHH-HHHHHhh----CCCCEEEEECC---CCCCHHHHHHHHH
Confidence 466777778888999998875221111000 000 002223 3444432 14666666663 2345554443332
Q ss_pred HHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCc
Q 017861 153 DSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 231 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 231 (365)
.|+.+ ++.++.++.+. +-++.+.++++.-.+. ..|=+.++++.+.++++. ..++++|+...-.---.
T Consensus 211 -~l~~~-----~i~~iEqP~~~-~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 211 -ALEEY-----DLFWFEEPVPP-DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDVTKVGGIT 278 (357)
T ss_pred -HhCcc-----CCCeEcCCCCc-cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCccccCCHH
Confidence 23333 34445222222 3567778888876665 444455678888888765 34788888765432111
Q ss_pred ccccHHHHHHHhCCeEEEecc
Q 017861 232 EENGVKAACDELGITLIAYCP 252 (365)
Q Consensus 232 ~~~~~~~~~~~~gi~v~a~~~ 252 (365)
....+...|+++|+.++..+-
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHcCCeEeccCC
Confidence 122589999999999887653
No 27
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=80.97 E-value=5.6 Score=34.89 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=73.1
Q ss_pred HHHHHHHHHhCCCceeEEEeCCC-CChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccc
Q 017861 149 AALKDSLFRLGLSSVELYQLAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 227 (365)
Q Consensus 149 ~~l~~SL~~Lg~d~iDl~~l~~~-~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 227 (365)
..+++.|....-+.+|.+.|... .......+.|+++..-|+---+++.||.-|....-+-. .|-.|..-.++|+-+
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~---~GrmPvt~~lPy~WY 138 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLL---RGRMPVTKALPYEWY 138 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHh---cCCCCCCCCCCCccc
Confidence 34555677788888888888321 12344555577888888877899999987776543321 222366677788777
Q ss_pred cCCccc----ccHHHHHHHhCCeEEEeccccccc
Q 017861 228 YRKPEE----NGVKAACDELGITLIAYCPIAQGA 257 (365)
Q Consensus 228 ~~~~~~----~~~~~~~~~~gi~v~a~~~l~~G~ 257 (365)
+...-. .+..++|++.|+.+.-..++..+.
T Consensus 139 dTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 139 DTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 654322 368899999999999998888763
No 28
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=79.49 E-value=65 Score=31.48 Aligned_cols=179 Identities=16% Similarity=0.174 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEecCCCC----------CCC--
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER-KQRDPEVEVTVATKFAAL----------PWR-- 141 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~-~~~~~R~~~~I~tK~~~~----------~~~-- 141 (365)
.++.+.+..|++.|- ...|+.. .|...+-+.+.+.+.+. +.....++|||++=+... +..
T Consensus 81 ~~a~~Av~~al~Sgk-----~N~Yaps--~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNI 153 (447)
T KOG0259|consen 81 QEAEQAVVDALRSGK-----GNGYAPS--VGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANI 153 (447)
T ss_pred HHHHHHHHHHHhcCC-----CCCcCCc--cccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCce
Confidence 667777778877763 2356653 35566788888887543 322247899998877420 000
Q ss_pred --CCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecC-------CCHHHHHHHHHHHHh
Q 017861 142 --LGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-------YSEKRLRNAYEKLKK 212 (365)
Q Consensus 142 --~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-------~~~~~l~~~~~~~~~ 212 (365)
..|..-.-.....-..|-+.|.|+ ||+. +.+--++.++.|.++..+--+=+.. |+-++|+++++.|++
T Consensus 154 LlPrPGfp~Y~~~a~~~~lEVR~ydl--LPe~-~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~k 230 (447)
T KOG0259|consen 154 LLPRPGFPLYDTRAIYSGLEVRYYDL--LPEK-DWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKK 230 (447)
T ss_pred ecCCCCCchHHHhhhhcCceeEeecc--cCcc-cceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHH
Confidence 001111112222233455566665 4432 2233467788888887665444332 456889999998888
Q ss_pred cCCceeeeeeecccccCCcccccHHHHHHH-hCCeEEEecccccccccCCCCCCC
Q 017861 213 RGIPLASNQVNYSLIYRKPEENGVKAACDE-LGITLIAYCPIAQGALTGKYTPQN 266 (365)
Q Consensus 213 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~-~gi~v~a~~~l~~G~L~~~~~~~~ 266 (365)
.++.+-.-++.-+.+....- .++..+= .-|.|+.-+.+..|.+.--|+-.+
T Consensus 231 lgi~vIaDEVY~~~vfg~~p---fvpmg~fssiVPVitlggisKrW~VPGWRlGW 282 (447)
T KOG0259|consen 231 LGIMVIADEVYGHTVFGDKP---FVPMGKFSSIVPVITLGGISKRWIVPGWRLGW 282 (447)
T ss_pred hCCeEEehhhcceeecCCCC---ccchhhccccCceEeecccccccccCCceeee
Confidence 88776666665444443221 3444432 246788877777777765555444
No 29
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=78.36 E-value=35 Score=33.06 Aligned_cols=141 Identities=20% Similarity=0.191 Sum_probs=86.7
Q ss_pred ccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHC---CCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 017861 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDN---GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (365)
Q Consensus 49 s~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~---Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~ 125 (365)
..+|-=|..+-. |+......+++++..+++....+. =+-++|..+..+.. ...+-+.+..
T Consensus 28 ~~~C~RC~~l~h---y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~--------~~~l~~~~~~------ 90 (360)
T TIGR03597 28 EVYCQRCFRLKH---YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL--------IPELKRFVGG------ 90 (360)
T ss_pred Ceeecchhhhhc---cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc--------cHHHHHHhCC------
Confidence 445655655422 333222334567777777666532 23467765555443 1222233321
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEe--CCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHH
Q 017861 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQL--AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 203 (365)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l--~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 203 (365)
..-++|.+|+--.+...+.+.+.+.+++.++.+|....|++.+ ...+..+++++.|.++.+.+.|-.+|.+|..-..+
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 3568899999654444456677777777788888654567777 33356889999998887777888999999876555
Q ss_pred HHH
Q 017861 204 RNA 206 (365)
Q Consensus 204 ~~~ 206 (365)
-..
T Consensus 171 iN~ 173 (360)
T TIGR03597 171 INK 173 (360)
T ss_pred HHH
Confidence 433
No 30
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=76.65 E-value=19 Score=30.87 Aligned_cols=121 Identities=20% Similarity=0.260 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCC--CCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC---CCCCCHHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASF--GAINSETLLGRFIKERKQRDPEVEVTVATKFAAL---PWRLGRQSVLA 149 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~--~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~---~~~~~~~~i~~ 149 (365)
+++..++-.++..|-..+ ..|+|.|- .-|-+++++|++-++++.- --+-|+|-.... ..++.++.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl----~cGNGgSaadAqHfaael~gRf~~eR~~l---paIaLt~dsS~lTai~NDy~yd~v-- 98 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVL----ACGNGGSAADAQHFAAELTGRFEKERPSL---PAIALSTDSSVLTAIANDYGYDEV-- 98 (176)
T ss_pred HHHHHHHHHHHHcCCEEE----EECCCcchhhHHHHHHHHhhHHHhcCCCC---CeeEeecccHHHhhhhccccHHHH--
Confidence 556777888899999999 67888771 1224678889988877632 355666554331 135666644
Q ss_pred HHHHHHHHhCCCceeEEEe--CCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHH
Q 017861 150 ALKDSLFRLGLSSVELYQL--AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 208 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l--~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~ 208 (365)
+.+..+.+|.. =|+++= +.. ...-++++++..|+.|.. -||+++-+...+..+.+
T Consensus 99 -FsRqveA~g~~-GDvLigISTSG-NS~nVl~Ai~~Ak~~gm~-vI~ltG~~GG~~~~~~D 155 (176)
T COG0279 99 -FSRQVEALGQP-GDVLIGISTSG-NSKNVLKAIEAAKEKGMT-VIALTGKDGGKLAGLLD 155 (176)
T ss_pred -HHHHHHhcCCC-CCEEEEEeCCC-CCHHHHHHHHHHHHcCCE-EEEEecCCCcccccccc
Confidence 55666677743 366655 322 356799999999999964 59999988777777643
No 31
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=75.53 E-value=36 Score=31.16 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=34.3
Q ss_pred cHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017861 235 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 300 (365)
Q Consensus 235 ~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 300 (365)
..+++|+..|...+...|...|.. .-..+.+++..+.++.+.++|+++|+
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~----------------~~~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYL----------------TPPNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 378899999999988766543311 01234456667778888888888875
No 32
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=75.06 E-value=32 Score=32.75 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=55.1
Q ss_pred HHHHHhCCCceeEEEe---CCC--CChHHHHHHHHHHHHcCCcCE-EeecCC---CHHHHHHHHHHHHhcCCceeeeeee
Q 017861 153 DSLFRLGLSSVELYQL---AGI--WGNEGFIDGLGDAVEQGLVKA-VGVSNY---SEKRLRNAYEKLKKRGIPLASNQVN 223 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l---~~~--~~~~~~~~~l~~l~~~G~ir~-iGvS~~---~~~~l~~~~~~~~~~~~~~~~~q~~ 223 (365)
+.-+.+|.|+||+-+. |+. ...++....++...+.=.+-- |..|.. +++.++++++.+... ++-++-+.
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~--~pLInSat 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE--RCLLGSAE 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC--CCEEEECC
Confidence 4446789999998876 221 123445555555544433333 555533 678888888876532 12222221
Q ss_pred cccccCCcccccHHHHHHHhCCeEEEecccc
Q 017861 224 YSLIYRKPEENGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 224 ~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~ 254 (365)
. +..+ .+.+.|+++|..+++.+|..
T Consensus 161 ~-----en~~-~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 E-----DNYK-KIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred H-----HHHH-HHHHHHHHhCCeEEEEcHHH
Confidence 1 1122 48999999999999987543
No 33
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=73.44 E-value=75 Score=29.16 Aligned_cols=108 Identities=13% Similarity=0.024 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEeCCCCC-hHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeee
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQLAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 220 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~-~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 220 (365)
.+.+.+.+..++.++ -|.|+||+=.=|...+ .++.-..+..+++.-.+ -|.|-+++++.++++++.+. |. .-+|
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v~e~aL~~~~--G~-~iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNVDYGGLDGVSAMKWLLNLLATEPTV-PLMLDSTNWEVIEAGLKCCQ--GK-CVVN 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHHHHHHHhhCC--CC-cEEE
Confidence 567777777777765 5999999765443223 23333333333332222 38899999999999987642 21 2222
Q ss_pred eeecccccCCcccccHHHHHHHhCCeEEEecccccc
Q 017861 221 QVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 221 q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
-+ +....+.....+++.++++|..++.+..-..|
T Consensus 98 sI--s~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 98 SI--NLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred eC--CCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 22 22221111124789999999999987654333
No 34
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=72.75 E-value=49 Score=31.58 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=64.5
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEE-eCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHH
Q 017861 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQ-LAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR 204 (365)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~-l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~ 204 (365)
++.+.++.|....+| ...+.+.+++..+.+|. ++.+ .+...+.+...+.++.+..+| +..|-++..+...+.
T Consensus 23 ~~~i~~v~k~~~~pf---~~~~~~Gi~~aa~~~G~---~v~~~~~~~~d~~~q~~~i~~li~~~-vdgIiv~~~d~~al~ 95 (336)
T PRK15408 23 AERIAFIPKLVGVGF---FTSGGNGAKEAGKELGV---DVTYDGPTEPSVSGQVQLINNFVNQG-YNAIIVSAVSPDGLC 95 (336)
T ss_pred CcEEEEEECCCCCHH---HHHHHHHHHHHHHHhCC---EEEEECCCCCCHHHHHHHHHHHHHcC-CCEEEEecCCHHHHH
Confidence 578999999754333 56788899999999994 5554 344345666778899998876 888999888877777
Q ss_pred HHHHHHHhcCCceeee
Q 017861 205 NAYEKLKKRGIPLASN 220 (365)
Q Consensus 205 ~~~~~~~~~~~~~~~~ 220 (365)
..++.+...++|+..+
T Consensus 96 ~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 96 PALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHCCCeEEEe
Confidence 7777777777765443
No 35
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=71.95 E-value=57 Score=27.18 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=70.9
Q ss_pred HHHHHHHHHHH-HCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 017861 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (365)
Q Consensus 75 ~~~~~~l~~A~-~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (365)
+...+++..++ +.|+..+.+.-.--. |+.+-.++++.. +++..+=. +......-..+-+
T Consensus 26 d~gakvia~~l~d~GfeVi~~g~~~tp---------~e~v~aA~~~dv------~vIgvSsl-----~g~h~~l~~~lve 85 (143)
T COG2185 26 DRGAKVIARALADAGFEVINLGLFQTP---------EEAVRAAVEEDV------DVIGVSSL-----DGGHLTLVPGLVE 85 (143)
T ss_pred ccchHHHHHHHHhCCceEEecCCcCCH---------HHHHHHHHhcCC------CEEEEEec-----cchHHHHHHHHHH
Confidence 34456788877 789998866554444 999998887643 44444333 2335667788888
Q ss_pred HHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHH
Q 017861 154 SLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 209 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 209 (365)
.|+..|.+.|= +++-...+.++ +.+|++.|--+.++-.+--.+.+..++..
T Consensus 86 ~lre~G~~~i~-v~~GGvip~~d----~~~l~~~G~~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 86 ALREAGVEDIL-VVVGGVIPPGD----YQELKEMGVDRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred HHHHhCCcceE-EeecCccCchh----HHHHHHhCcceeeCCCCCHHHHHHHHHHH
Confidence 99999998654 23422222333 77889999999988866444444444443
No 36
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=71.44 E-value=1e+02 Score=29.81 Aligned_cols=146 Identities=11% Similarity=0.005 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~S 154 (365)
++..+.+..+.+.|++.|=.-- - |. + +++++.- .+++.|..-.. ..++.+...+-
T Consensus 128 ~~~~~~a~~~~~~Gf~~~KiKv------~------~~-v-~avre~~----G~~~~l~vDaN---~~w~~~~A~~~---- 182 (361)
T cd03322 128 PELLEAVERHLAQGYRAIRVQL------P------KL-F-EAVREKF----GFEFHLLHDVH---HRLTPNQAARF---- 182 (361)
T ss_pred HHHHHHHHHHHHcCCCeEeeCH------H------HH-H-HHHHhcc----CCCceEEEECC---CCCCHHHHHHH----
Confidence 5566667777788998773210 0 22 2 3444432 13454444432 23455543322
Q ss_pred HHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCccc
Q 017861 155 LFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE 233 (365)
Q Consensus 155 L~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~ 233 (365)
++.|. .+++.++-++.+ .+-++.+.+|++...+. ..|=|-++...+..++.. .-++++|+...-.--=.+.
T Consensus 183 ~~~l~--~~~l~~iEeP~~-~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGit~~ 254 (361)
T cd03322 183 GKDVE--PYRLFWMEDPTP-AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGITPA 254 (361)
T ss_pred HHHhh--hcCCCEEECCCC-cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCHHHH
Confidence 23332 246666723222 23477888888887776 677777888888888765 3478888876543211112
Q ss_pred ccHHHHHHHhCCeEEEeccc
Q 017861 234 NGVKAACDELGITLIAYCPI 253 (365)
Q Consensus 234 ~~~~~~~~~~gi~v~a~~~l 253 (365)
..+.+.|+++|+.++.++..
T Consensus 255 ~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 255 RKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHHHHcCCeeeccCCC
Confidence 24899999999999876543
No 37
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=71.25 E-value=85 Score=28.87 Aligned_cols=99 Identities=18% Similarity=0.106 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEe---CCCC--C----hHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHh
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQL---AGIW--G----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 212 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l---~~~~--~----~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 212 (365)
.+.+.+.+..++.+ +-|.|+||+=.. |+.. + .+.+...++.+++.-.+. +.+-+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~--- 95 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEA--- 95 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHh---
Confidence 45565555555543 568999998654 3221 2 223444566676664444 89999999999999876
Q ss_pred cCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecc
Q 017861 213 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 252 (365)
Q Consensus 213 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~ 252 (365)
|. .-+|- .+..... .++++.++++|+.++.+..
T Consensus 96 -G~-~iINd--isg~~~~---~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 96 -GA-DIIND--VSGGSDD---PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred -CC-CEEEe--CCCCCCC---hHHHHHHHHcCCCEEEECC
Confidence 22 22222 2332211 2489999999999999654
No 38
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=70.49 E-value=30 Score=31.48 Aligned_cols=104 Identities=17% Similarity=0.092 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEe-CC--CCChHHHHHHHHHHHHcC-CcCEEeecCCCHHHHHHHHHHHHhcCCc
Q 017861 141 RLGRQSVLAALKDSLFRLGLSSVELYQL-AG--IWGNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIP 216 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~d~iDl~~l-~~--~~~~~~~~~~l~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 216 (365)
.++.+...+-++ .|.++|+++|++-.. +. ..-.++.++.++.+.+.+ .++...++......++.+.+. .
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~------g 87 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA------G 87 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC------C
Confidence 355665555444 477899999998877 21 112366788888888888 677667776555555555443 2
Q ss_pred eeeeeeeccccc--------CCcc-----cccHHHHHHHhCCeEEEec
Q 017861 217 LASNQVNYSLIY--------RKPE-----ENGVKAACDELGITLIAYC 251 (365)
Q Consensus 217 ~~~~q~~~n~~~--------~~~~-----~~~~~~~~~~~gi~v~a~~ 251 (365)
++.+++.+..-+ +..+ ....+++++++|+.+...-
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455555544331 1110 1147778888888776544
No 39
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=69.67 E-value=12 Score=34.58 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=62.2
Q ss_pred HHHHhCCCceeEEEeCCCCC-hHHHHHHHHHHHHcCCcCEEeecC---CCHHHHHHHHHHHHhcCCceeeeeeecccccC
Q 017861 154 SLFRLGLSSVELYQLAGIWG-NEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 229 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~~~~~-~~~~~~~l~~l~~~G~ir~iGvS~---~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 229 (365)
+|++...+..|++.+..... --.+++ .++..- ..|=|+. +....++++++..+..+++..++-+.||+.+.
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~gCpVi~---sl~~aD--~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s 229 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTGCPVIA---SLKGAD--LAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS 229 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCCChHHH---hhccCC--EEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch
Confidence 44444444478787732211 112222 333333 3455554 45578889999999999999999999977664
Q ss_pred CcccccHHHHHHHhCCeEEEecccccc
Q 017861 230 KPEENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 230 ~~~~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
++.++|++.|+.+++.-|+..-
T Consensus 230 -----~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 230 -----EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred -----HHHHHHHHcCCCeeEECCcchh
Confidence 3899999999999999888753
No 40
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=69.64 E-value=94 Score=29.91 Aligned_cols=151 Identities=13% Similarity=0.025 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~S 154 (365)
++..+.+..+.+.|++.|=.--...... .+.-.=+++++.. .+++.|..-.. ..++.+...+-++ .
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~~~~~------~d~~~v~air~~~----g~~~~l~vDaN---~~~~~~~A~~~~~-~ 208 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGYPTAD------EDLAVVRSIRQAV----GDGVGLMVDYN---QSLTVPEAIERGQ-A 208 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCCCChH------hHHHHHHHHHHhh----CCCCEEEEeCC---CCcCHHHHHHHHH-H
Confidence 4455555666677877653211010100 0222223455432 13555555442 2355654433333 3
Q ss_pred HHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCccc
Q 017861 155 LFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE 233 (365)
Q Consensus 155 L~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~ 233 (365)
|+.++. .++-++.. .+-++.+.+|++.-.|. ..|=+.++++++..+++. .-++++|+..+-.---.+.
T Consensus 209 l~~~~i-----~~iEeP~~-~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~GGit~~ 277 (355)
T cd03321 209 LDQEGL-----TWIEEPTL-QHDYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKIGGVTGW 277 (355)
T ss_pred HHcCCC-----CEEECCCC-CcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhhCCHHHH
Confidence 344543 44422221 23467777787775544 455666788888888765 3478888876653211112
Q ss_pred ccHHHHHHHhCCeEEEe
Q 017861 234 NGVKAACDELGITLIAY 250 (365)
Q Consensus 234 ~~~~~~~~~~gi~v~a~ 250 (365)
..+.+.|+++|+.++.+
T Consensus 278 ~~ia~~A~~~gi~~~~h 294 (355)
T cd03321 278 LRASALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHHHHcCCeeccc
Confidence 24899999999998644
No 41
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=69.37 E-value=93 Score=28.54 Aligned_cols=167 Identities=15% Similarity=0.044 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCC-C----CCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRA-S----FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~-s----~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~ 146 (365)
.+.++..++++.-.+.||..|+.+..-+.+. + +-....++.+.+..+..+ ..++....-. .....
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~----~~~~~~~~~~----~~~~~-- 88 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALK----QAKLGVLLLP----GIGTV-- 88 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhcc----CCEEEEEecC----CccCH--
Confidence 4568889999999999999999972100000 0 000123566655444432 2344322211 11223
Q ss_pred HHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeec---CCCHHHHHHHHHHHHhcCCceeeeeee
Q 017861 147 VLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVS---NYSEKRLRNAYEKLKKRGIPLASNQVN 223 (365)
Q Consensus 147 i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS---~~~~~~l~~~~~~~~~~~~~~~~~q~~ 223 (365)
+.++..++ .|+|.+-++.-. .+...+.+.++.+++.|+--.+.++ .++++.+.++.+.+...|. +.+.+.
T Consensus 89 --~~i~~a~~-~g~~~iri~~~~--s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~--d~i~l~ 161 (263)
T cd07943 89 --DDLKMAAD-LGVDVVRVATHC--TEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGA--DCVYVT 161 (263)
T ss_pred --HHHHHHHH-cCCCEEEEEech--hhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCC--CEEEEc
Confidence 33444443 477776665432 2356778888899999976655552 3467777776666655543 333332
Q ss_pred ccc--ccCCcccccHHHHHHHh----CCeEEEecccccc
Q 017861 224 YSL--IYRKPEENGVKAACDEL----GITLIAYCPIAQG 256 (365)
Q Consensus 224 ~n~--~~~~~~~~~~~~~~~~~----gi~v~a~~~l~~G 256 (365)
=+. +.|... .+++..++++ .+++.++.-++.+
T Consensus 162 DT~G~~~P~~v-~~lv~~l~~~~~~~~l~~H~Hn~~GlA 199 (263)
T cd07943 162 DSAGAMLPDDV-RERVRALREALDPTPVGFHGHNNLGLA 199 (263)
T ss_pred CCCCCcCHHHH-HHHHHHHHHhCCCceEEEEecCCcchH
Confidence 222 222211 2467776664 3455555555544
No 42
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.34 E-value=9.1 Score=36.32 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=87.7
Q ss_pred cccceeeecCCCCcccccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCC--eeecccccCCCCCCCCCchH
Q 017861 33 KTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEVYGSRASFGAINSE 110 (365)
Q Consensus 33 ~~~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DTA~~Yg~g~s~~~~~sE 110 (365)
..+|.+..++ .|..|-.+|+|. +|.. .+.+|...|.+ .||+++.-- |
T Consensus 171 YspLk~~g~~-pG~~vgI~GlGG--LGh~------------------aVq~AKAMG~rV~vis~~~~kk----------e 219 (360)
T KOG0023|consen 171 YSPLKRSGLG-PGKWVGIVGLGG--LGHM------------------AVQYAKAMGMRVTVISTSSKKK----------E 219 (360)
T ss_pred eehhHHcCCC-CCcEEEEecCcc--cchH------------------HHHHHHHhCcEEEEEeCCchhH----------H
Confidence 3468888888 689999999988 5553 46666667766 566643211 3
Q ss_pred HHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCc
Q 017861 111 TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLV 190 (365)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~i 190 (365)
++++... -|.++++||- ++ +.+++..++. .+.|.+--+ ..-.+-..++-+|..|++
T Consensus 220 ----ea~~~LG----Ad~fv~~~~d--------~d-~~~~~~~~~d-g~~~~v~~~------a~~~~~~~~~~lk~~Gt~ 275 (360)
T KOG0023|consen 220 ----EAIKSLG----ADVFVDSTED--------PD-IMKAIMKTTD-GGIDTVSNL------AEHALEPLLGLLKVNGTL 275 (360)
T ss_pred ----HHHHhcC----cceeEEecCC--------HH-HHHHHHHhhc-Ccceeeeec------cccchHHHHHHhhcCCEE
Confidence 3456665 1344444433 33 3344444432 222222111 112234456678899999
Q ss_pred CEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeE
Q 017861 191 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 247 (365)
Q Consensus 191 r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v 247 (365)
-.+|+-..+ ..+.-.- .-+-...+-.|.+--..+.++++++|.+++|..
T Consensus 276 V~vg~p~~~-~~~~~~~-------lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 276 VLVGLPEKP-LKLDTFP-------LILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred EEEeCcCCc-ccccchh-------hhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 999998862 2222111 113344556666555555667999999998864
No 43
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=68.99 E-value=43 Score=30.85 Aligned_cols=70 Identities=10% Similarity=-0.046 Sum_probs=44.7
Q ss_pred HHHHHHHcCCcCEEeecC-CCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccc
Q 017861 180 GLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 180 ~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~ 254 (365)
.|.+..++|+. .+|+-. .+...+.++ +...|+.+.++-.+..+++..... .++..|+..|+..+++-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~---~a~~G~D~v~iD~EHg~~~~~~~~-~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEV---LGLAGFDWLVLDGEHAPNDVSTFI-PQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHH---HHhcCCCEEEEccccCCCCHHHHH-HHHHHHhhcCCCcEEECCCC
Confidence 45555666875 455432 222333333 233456778888888888866543 48888899999999987655
No 44
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=67.86 E-value=95 Score=28.10 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
.+.++..++++...+.|+..|+....-.....+-....++.+.+ +++.. +...+...++.+ . +.+
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~-l~~~~---~~~~~~~l~~~~-------~----~~i 80 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRA-IRKLV---PNVKLQALVRNR-------E----KGI 80 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHH-HHhcc---CCcEEEEEccCc-------h----hhH
Confidence 46799999999999999999986432221000000112444444 33322 112333333321 2 223
Q ss_pred HHHHHHhCCCceeEEEeCC----C----C----ChHHHHHHHHHHHHcCCcCEEee---cC--CCHHHHHHHHHHHHhcC
Q 017861 152 KDSLFRLGLSSVELYQLAG----I----W----GNEGFIDGLGDAVEQGLVKAVGV---SN--YSEKRLRNAYEKLKKRG 214 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~~----~----~----~~~~~~~~l~~l~~~G~ir~iGv---S~--~~~~~l~~~~~~~~~~~ 214 (365)
+... ..|.+.+-++.-.. . . ..+.+.+.++.+++.|.--.+.+ +. ++++.+.++.+.+...|
T Consensus 81 ~~a~-~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g 159 (265)
T cd03174 81 ERAL-EAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG 159 (265)
T ss_pred HHHH-hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC
Confidence 3222 33556665555421 0 1 25677888888999997655554 34 66777777777766655
Q ss_pred C
Q 017861 215 I 215 (365)
Q Consensus 215 ~ 215 (365)
.
T Consensus 160 ~ 160 (265)
T cd03174 160 A 160 (265)
T ss_pred C
Confidence 3
No 45
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=67.41 E-value=1.2e+02 Score=28.90 Aligned_cols=152 Identities=12% Similarity=0.029 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~S 154 (365)
++..+.+....+.|++.|=.-- +. .. +..+=+++++.. .++-|.-=.. ..++.+.++ . -+.
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiKv--~~-~~------d~~~v~~vr~~~-----~~~~l~vDaN---~~~~~~~a~-~-~~~ 194 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLKI--TP-QI------MHQLVKLRRLRF-----PQIPLVIDAN---ESYDLQDFP-R-LKE 194 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEEe--CC-ch------hHHHHHHHHHhC-----CCCcEEEECC---CCCCHHHHH-H-HHH
Confidence 5566677777889999874311 11 11 222224444432 1222222221 224455432 1 233
Q ss_pred HHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCccc
Q 017861 155 LFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE 233 (365)
Q Consensus 155 L~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~ 233 (365)
|+.+ ++.++-++.+ .+-++.+.++++.-.+. ..|=|.++.+.+..+++. .-++++|+...-+--=...
T Consensus 195 l~~~-----~~~~iEeP~~-~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~~GGit~~ 263 (324)
T TIGR01928 195 LDRY-----QLLYIEEPFK-IDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGRLGGLTEV 263 (324)
T ss_pred HhhC-----CCcEEECCCC-hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcchhcCHHHH
Confidence 4433 5566623322 34467888888876665 677778888888887664 3478888776543211111
Q ss_pred ccHHHHHHHhCCeEEEecccccc
Q 017861 234 NGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 234 ~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
..+...|+++|+.++..+.+..|
T Consensus 264 ~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 264 QKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHHHHcCCeEEEcceEccc
Confidence 24899999999999987666554
No 46
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=67.23 E-value=1e+02 Score=28.23 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEe---CCCC--C----hHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHh
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQL---AGIW--G----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 212 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l---~~~~--~----~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 212 (365)
.+.+.+.+..++.+ .-|.|+||+=.- |+.. + .+.+...++.+++.-.+- |.+.+++++.++++++..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~g-- 96 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKAG-- 96 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHhC--
Confidence 45676666665554 678999998765 3211 1 245666677777663443 899999999999998763
Q ss_pred cCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccc
Q 017861 213 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 213 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~ 254 (365)
..-+|- .+....+ .++++.++++|..++.+..-+
T Consensus 97 ---~~iINd--is~~~~~---~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 97 ---ADIIND--VSGGRGD---PEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred ---CCEEEe--CCCCCCC---hHHHHHHHHcCCCEEEECcCC
Confidence 222222 1222211 248999999999999886544
No 47
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=67.05 E-value=28 Score=30.55 Aligned_cols=148 Identities=12% Similarity=-0.018 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
.+++++.++++.+++.|++..|. | ++.+..++......+.+++++++-= ....+.++..+
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i---~-----------~~~l~p~m~~iG~~w~~gei~va~~------~~a~~~~~~~l 68 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIEL---I-----------EKGLMAGMGVVGKLFEDGELFLPHV------MMSADAMLAGI 68 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHH---H-----------HHHHHHHHHHHHHHHcCCCccHHHH------HHHHHHHHHHH
Confidence 35689999999999999987764 3 4555555555432222333333111 12344455555
Q ss_pred HHHHHHhCCC-----ceeEEEe--CCCCChHHHHHHHHHHHHcCC-cCEEeecCCCHHHHHHHHHHHHhcCCceeeeeee
Q 017861 152 KDSLFRLGLS-----SVELYQL--AGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 223 (365)
Q Consensus 152 ~~SL~~Lg~d-----~iDl~~l--~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~ 223 (365)
+.....+..+ .--+++. ++..-.-...-...-|...|. |.++|... +++.+.+.+.. ..++++.+.
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~-----~~pd~v~lS 142 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKK-----EKPLMLTGS 142 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHH-----cCCCEEEEc
Confidence 5554544321 1112222 221111222222333445553 45566443 55555555444 456776666
Q ss_pred cccccCCcccccHHHHHHHhCC
Q 017861 224 YSLIYRKPEENGVKAACDELGI 245 (365)
Q Consensus 224 ~n~~~~~~~~~~~~~~~~~~gi 245 (365)
+.+......-.++++.+++.+.
T Consensus 143 ~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 143 ALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred cccccCHHHHHHHHHHHHHcCC
Confidence 6544433333357777777743
No 48
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=67.01 E-value=25 Score=30.24 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCceeeeeeecccccCC-----c---------ccccHHHHHHHhCCeEEEecccccccccCCCCCCC
Q 017861 201 KRLRNAYEKLKKRGIPLASNQVNYSLIYRK-----P---------EENGVKAACDELGITLIAYCPIAQGALTGKYTPQN 266 (365)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~-----~---------~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~ 266 (365)
..++++.+.+++.|+.+.......+..... . .-...++.|++.|+..+...+-..+..
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~-------- 98 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSG-------- 98 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSS--------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccc--------
Confidence 455666666666776655554444443321 0 012488999999999887764421100
Q ss_pred CCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017861 267 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 300 (365)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 300 (365)
........++...+.++.+.++|+++|+
T Consensus 99 ------~~~~~~~~~~~~~~~l~~l~~~a~~~gv 126 (213)
T PF01261_consen 99 ------PEDDTEENWERLAENLRELAEIAEEYGV 126 (213)
T ss_dssp ------TTSSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ------cCCCHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 0112335667777788888888888874
No 49
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=66.59 E-value=1.5e+02 Score=29.93 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEe--CCCCChHHHHHHHHHHHH----cCCcCEEeecC--CCHHHHHHHHHHHHhc
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQL--AGIWGNEGFIDGLGDAVE----QGLVKAVGVSN--YSEKRLRNAYEKLKKR 213 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l--~~~~~~~~~~~~l~~l~~----~G~ir~iGvS~--~~~~~l~~~~~~~~~~ 213 (365)
.+.+.|.+.++. +++.|...+-|+.= |...+.+.+.+.++.+++ .|.++.++|+- .+.++++++.+.
T Consensus 115 Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lkea---- 189 (469)
T PRK09613 115 LTQEEIREEVKA-LEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEA---- 189 (469)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHc----
Confidence 578889988875 57899877766421 233467777888888776 47787777653 466777776554
Q ss_pred CC-ceeeeeeeccc-----ccCCc------ccccHHHHHHHhCCeEEEe
Q 017861 214 GI-PLASNQVNYSL-----IYRKP------EENGVKAACDELGITLIAY 250 (365)
Q Consensus 214 ~~-~~~~~q~~~n~-----~~~~~------~~~~~~~~~~~~gi~v~a~ 250 (365)
|+ ...++|--||. +++.. .+-+.++.+++.|+.-+..
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~ 238 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI 238 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe
Confidence 33 35556655542 22210 1124788888899874443
No 50
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=66.49 E-value=1.2e+02 Score=28.81 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=73.9
Q ss_pred chhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 017861 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (365)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (365)
..++.++..++++.+.+.|+..|--+ | |+..-..+-++++.. +++... ..++.|+|-.. - +.+
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~~-i~~~~~---l~~i~itTNG~----l-----l~~ 105 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVAR-LGKLPG---LEELSLTTNGS----R-----LAR 105 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHHH-HHhCCC---CceEEEEeChh----H-----HHH
Confidence 34678999999999999999887532 3 322111111233322 333220 12566766641 1 112
Q ss_pred HHHHHHHHhCCCceeEEEeCCC-----------CChHHHHHHHHHHHHcCC--cC--EEeecCCCHHHHHHHHHHHHhcC
Q 017861 150 ALKDSLFRLGLSSVELYQLAGI-----------WGNEGFIDGLGDAVEQGL--VK--AVGVSNYSEKRLRNAYEKLKKRG 214 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l~~~-----------~~~~~~~~~l~~l~~~G~--ir--~iGvS~~~~~~l~~~~~~~~~~~ 214 (365)
.-+.|...|++++-+ -|+.. ...+.+++.++.+++.|. |+ .+.+...+.+++..+++.+...+
T Consensus 106 -~~~~L~~aGl~~v~I-SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 106 -FAAELADAGLKRLNI-SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred -HHHHHHHcCCCeEEE-EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 334566677665542 33111 126788888988888885 22 33444567788888888877766
Q ss_pred Ccee
Q 017861 215 IPLA 218 (365)
Q Consensus 215 ~~~~ 218 (365)
+.+.
T Consensus 184 i~~~ 187 (329)
T PRK13361 184 LDIA 187 (329)
T ss_pred CeEE
Confidence 5443
No 51
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=64.33 E-value=1.8e+02 Score=33.16 Aligned_cols=95 Identities=9% Similarity=0.056 Sum_probs=55.2
Q ss_pred HHhCCCceeEEEeCCCCChHHHHHHHHHHHHc----CCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCc
Q 017861 156 FRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQ----GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 231 (365)
Q Consensus 156 ~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~----G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 231 (365)
-+-|-+.||+-.=....+.++.+..+..+.+. -+ --|-|-++.++.++.+++.+. .+.-+|-+ |....+.
T Consensus 394 ve~GA~iIDVn~g~~~id~~eem~rvv~~i~~~~~~~~-vPlsIDS~~~~ViEaaLk~~~---G~~IINSI--s~~~~~~ 467 (1229)
T PRK09490 394 VENGAQIIDINMDEGMLDSEAAMVRFLNLIASEPDIAR-VPIMIDSSKWEVIEAGLKCIQ---GKGIVNSI--SLKEGEE 467 (1229)
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCC-ceEEEeCCcHHHHHHHHhhcC---CCCEEEeC--CCCCCCc
Confidence 35688999986321112334444443333332 12 237888899999999987633 23334333 3322111
Q ss_pred ccccHHHHHHHhCCeEEEecccccc
Q 017861 232 EENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 232 ~~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
.-..+++.|+++|..++++.--..|
T Consensus 468 ~~~~~~~l~~kyga~vV~m~~de~G 492 (1229)
T PRK09490 468 KFIEHARLVRRYGAAVVVMAFDEQG 492 (1229)
T ss_pred cHHHHHHHHHHhCCCEEEEecCCCC
Confidence 1114899999999999998654444
No 52
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=62.17 E-value=1.1e+02 Score=28.29 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=64.5
Q ss_pred HHHHHHcCCcCEEee-cCC-CHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccc
Q 017861 181 LGDAVEQGLVKAVGV-SNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 258 (365)
Q Consensus 181 l~~l~~~G~ir~iGv-S~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L 258 (365)
|.+..++|+.- +|+ ... ++...+.+ ...|+.+.++-.+..+++..... .++..++..|+..+++.|-..
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~----a~~GfD~v~iD~EHg~~~~~~l~-~~i~a~~~~g~~~lVRvp~~~--- 79 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIA----ATSGYDWLLIDGEHAPNTIQDLY-HQLQAIAPYASQPVIRPVEGS--- 79 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHH----HHcCCCEEEEccccCCCCHHHHH-HHHHHHHhcCCCeEEECCCCC---
Confidence 44555667754 554 222 33333333 23356777778888888866543 478888888998888766432
Q ss_pred cCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhhCC
Q 017861 259 TGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGW 337 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~~~ 337 (365)
...+..+|..+.- .++|-..+.+++++.+++..+
T Consensus 80 ---------------------------------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 ---------------------------------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred ---------------------------------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 1233556666643 677777777777777777765
No 53
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=62.13 E-value=1.2e+02 Score=27.14 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeee
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 221 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q 221 (365)
++.+. +..+-+.|.++|+++|++-+-.......+.++.+.+.... .+..+++......++.+.+.+...+.....+-
T Consensus 11 ~~~~~-k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 11 FSTEE-KLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp --HHH-HHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred cCHHH-HHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEEEec
Confidence 44554 4455556999999999998331111233444555555555 55566777777888887776666655433333
Q ss_pred eecccccCC------c-----ccccHHHHHHHhCCeE
Q 017861 222 VNYSLIYRK------P-----EENGVKAACDELGITL 247 (365)
Q Consensus 222 ~~~n~~~~~------~-----~~~~~~~~~~~~gi~v 247 (365)
...|..+.. . .-.+.+.+++++|..+
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 344431110 0 0124788999999988
No 54
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=61.72 E-value=94 Score=26.25 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=55.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcc----cccHHHHHHHhC
Q 017861 169 AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE----ENGVKAACDELG 244 (365)
Q Consensus 169 ~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~----~~~~~~~~~~~g 244 (365)
|.....+++++...+=-++.-|++|=|.+-+.....++++..+.. +.++-+.|+....... +.++-+..+++|
T Consensus 7 pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~---lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erG 83 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD---LKVVVVTHHAGFEEKGTQEMDEEVRKELKERG 83 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC---ceEEEEEeecccccCCceecCHHHHHHHHHcC
Confidence 433446777877666667788999999888777777777764321 4455555555443332 235888899999
Q ss_pred CeEEEecccccc
Q 017861 245 ITLIAYCPIAQG 256 (365)
Q Consensus 245 i~v~a~~~l~~G 256 (365)
..+..-+-...|
T Consensus 84 a~v~~~sHalSg 95 (186)
T COG1751 84 AKVLTQSHALSG 95 (186)
T ss_pred ceeeeehhhhhc
Confidence 998875544433
No 55
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=60.39 E-value=78 Score=31.40 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEe---CCC-----------CC-hH---HHHHHH-HHHHHcCCcCEEeecCCCH
Q 017861 141 RLGRQSVLAALKDSLFRLGLSSVELYQL---AGI-----------WG-NE---GFIDGL-GDAVEQGLVKAVGVSNYSE 200 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~d~iDl~~l---~~~-----------~~-~~---~~~~~l-~~l~~~G~ir~iGvS~~~~ 200 (365)
..+.+.+.+.++..+ .|+.|+|.+|.+ |.. .+ .+ +.++.. +.|.+.|. +.||+|||.-
T Consensus 200 ~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 200 GQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 356777777777765 477999999999 221 11 12 344544 44566777 8999999964
No 56
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=60.11 E-value=1.4e+02 Score=29.56 Aligned_cols=101 Identities=12% Similarity=0.050 Sum_probs=49.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC-----ceeEEEe--CCCC-----ChHHH
Q 017861 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-----SVELYQL--AGIW-----GNEGF 177 (365)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d-----~iDl~~l--~~~~-----~~~~~ 177 (365)
|+.|-+++++...+.+.+-++|.|=+.. ..-.+. ++...++++.+ .+.++.+ |... ..+..
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~~---~liGdD----i~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a 138 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCLT---ETIGDD----VAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNA 138 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcch---hhcCCC----HHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHH
Confidence 7777788877543332345677776643 222233 33333444322 2445555 3221 12334
Q ss_pred HHHHHHH-------HHcCCcCEEeecCCCHHHHHHHHHHHHhcCCce
Q 017861 178 IDGLGDA-------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 217 (365)
Q Consensus 178 ~~~l~~l-------~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 217 (365)
+++|.+. ++.++|--||-++.....+.++.+.++..|+++
T Consensus 139 ~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v 185 (428)
T cd01965 139 VKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEP 185 (428)
T ss_pred HHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCE
Confidence 4444332 234567778766653333444444455555543
No 57
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=59.56 E-value=1.1e+02 Score=28.04 Aligned_cols=68 Identities=7% Similarity=-0.138 Sum_probs=41.5
Q ss_pred HHHHHcCCcCEEee-cCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccc
Q 017861 182 GDAVEQGLVKAVGV-SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 182 ~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~ 254 (365)
.+..++|+. .+|+ .+.+...+.+++ ...|+.+.++-.+..+++..... .++..++..|+..+++-|-.
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~---a~~G~D~v~iD~EHg~~~~~~~~-~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVL---GLAGFDWLLLDGEHAPNDVLTFI-PQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHH---HhcCCCEEEEecccCCCCHHHHH-HHHHHHhhcCCCcEEECCCC
Confidence 344455664 3554 222223333332 23456777888888888865443 47888888999988886654
No 58
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=59.25 E-value=13 Score=27.51 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 017861 282 RNLQPLLNRIKELGENYSKTSTQVGLNW 309 (365)
Q Consensus 282 ~~~~~~~~~l~~ia~~~~~s~~qlal~~ 309 (365)
.+..+.+.+|.++|.+.|++..++|.-.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3477788899999999999999987644
No 59
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=59.01 E-value=1.9e+02 Score=28.98 Aligned_cols=109 Identities=23% Similarity=0.186 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceee
Q 017861 141 RLGRQSVLAALKDSLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 219 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 219 (365)
..+.+.+++.++..+ +|+.++|++|.| +.+. . .|.+.+++|++..-.-..-..+..+.+.+.+...| +
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~~~pg--T----~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~G----y 294 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALNLLPG--T----PLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAG----W 294 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccCCC--C----HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCC----C
Confidence 456777777776655 488888888888 2111 0 12334555654310000001112223333333333 2
Q ss_pred eeeecccccCCcccccHHHHHHHhCCeEEEecccccccccC
Q 017861 220 NQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 260 (365)
Q Consensus 220 ~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~ 260 (365)
.|...+-+.+...+.......-..+..+++.++-+.|.+.+
T Consensus 295 ~~yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~ 335 (449)
T PRK09058 295 RQLSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGG 335 (449)
T ss_pred eEEeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCC
Confidence 33333333332211124444445578899999999887754
No 60
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=58.76 E-value=28 Score=31.55 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=47.5
Q ss_pred CCCcccccceecccc---cCCCCCCCCCCCchhHHHHHHHHHHHH----HHCCCCeeecccc---cCCCCCCCCCchHHH
Q 017861 43 GSDLKVTKLGVGAWS---WGDTSYWNNFQWDDRKMKAAKAAFDTS----LDNGITFFDTAEV---YGSRASFGAINSETL 112 (365)
Q Consensus 43 ~tg~~vs~lglGt~~---~g~~~~~~~~~~~~~~~~~~~~~l~~A----~~~Gin~~DTA~~---Yg~g~s~~~~~sE~~ 112 (365)
.||+.++.+||.+.+ ||.. ++..++++.+++..| .++|||.|--|.. |.... |+-
T Consensus 65 etgv~ipSmClSaHRRfPfGS~--------D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d-------~eT 129 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSK--------DEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEAD-------EET 129 (287)
T ss_pred HhCCCccchhhhhhccCCCCCC--------CHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCC-------HHH
Confidence 479999999999853 4443 445567777776665 4789999987753 33332 444
Q ss_pred HHHHHHhccCC---CCCCcEEEEecC
Q 017861 113 LGRFIKERKQR---DPEVEVTVATKF 135 (365)
Q Consensus 113 lG~al~~~~~~---~~R~~~~I~tK~ 135 (365)
..+++++.... ..+..|.++.-+
T Consensus 130 ~~rFi~g~~~a~~lA~~aqV~lAvEi 155 (287)
T COG3623 130 RQRFIEGLKWAVELAARAQVMLAVEI 155 (287)
T ss_pred HHHHHHHHHHHHHHHHhhccEEEeee
Confidence 44444432100 024567766665
No 61
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=58.71 E-value=41 Score=30.07 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=54.4
Q ss_pred eeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHH
Q 017861 163 VELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACD 241 (365)
Q Consensus 163 iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~ 241 (365)
.++.++-++.+. +-++.+.+|.+...+. ..+=|.++.+.+.++++. ..++++|+..+..---.....+...|+
T Consensus 120 ~~i~~iEeP~~~-~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAP-DDLEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCc-cCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHHHH
Confidence 455666232222 2367777888887776 344455667777665543 247888876654321111124889999
Q ss_pred HhCCeEEEecccccc
Q 017861 242 ELGITLIAYCPIAQG 256 (365)
Q Consensus 242 ~~gi~v~a~~~l~~G 256 (365)
++|+.++.++.+..+
T Consensus 194 ~~gi~~~~~~~~~s~ 208 (229)
T cd00308 194 AFGIRVMVHGTLESS 208 (229)
T ss_pred HcCCEEeecCCCCCH
Confidence 999999998776544
No 62
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=58.16 E-value=1.3e+02 Score=27.70 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=30.9
Q ss_pred cHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017861 235 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 300 (365)
Q Consensus 235 ~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 300 (365)
..++.|++.|..++.... .... . . ....+.+....+.+.++.++|+++|+
T Consensus 98 ~~i~~a~~lG~~~v~~~~--~~~~-----~-----~----~~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAG--YDVY-----Y-----E----EHDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred HHHHHHHHhCCCEEEecC--cccc-----c-----C----cCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 478889999998886521 1000 0 0 01234455666777888888888775
No 63
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=58.11 E-value=2.2e+02 Score=28.92 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHcCCcCEEeecC----CCHHHHHHHHHHHHhcC-Cceee-eeeecccccCCcccccHHHHHHHhCCe
Q 017861 173 GNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRG-IPLAS-NQVNYSLIYRKPEENGVKAACDELGIT 246 (365)
Q Consensus 173 ~~~~~~~~l~~l~~~G~ir~iGvS~----~~~~~l~~~~~~~~~~~-~~~~~-~q~~~n~~~~~~~~~~~~~~~~~~gi~ 246 (365)
+.+.+++.++.++++..++.+-+.. .+...+.++++...+.+ ..+.+ .+...+.+.++. ++++..++.|+.
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~---ell~~l~~aG~~ 299 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDA---DILHLYRRAGLV 299 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCH---HHHHHHHHhCCc
Confidence 4678899999998776678776653 24455666655554443 33222 344444333222 488888998887
Q ss_pred EEEeccc
Q 017861 247 LIAYCPI 253 (365)
Q Consensus 247 v~a~~~l 253 (365)
.+..+.-
T Consensus 300 ~v~iGiE 306 (497)
T TIGR02026 300 HISLGTE 306 (497)
T ss_pred EEEEccc
Confidence 6665433
No 64
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=56.96 E-value=44 Score=29.64 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=43.7
Q ss_pred HHHHhCCCceeEEEeCCCCC--hHHHHHHHHHHHHcCCcCEEeec-CCCHHHHHHHHHHHHhcCCceeeeeeec
Q 017861 154 SLFRLGLSSVELYQLAGIWG--NEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 224 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~~~~~--~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 224 (365)
....+|.||+=+++.|.... ..+....+.+.. .+.++.+||. |-+++.+.++.+. ..++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-----TSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-----CCCCEEEECC
Confidence 34569999999987743211 233334443332 3568889996 6788888888765 5689999974
No 65
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=56.27 E-value=1.9e+02 Score=27.66 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHC-CCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 017861 74 MKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (365)
Q Consensus 74 ~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (365)
.++..+++++..+. |++-|--+. |+.-. .+...|.+.++.......-..+-|.|+.. ...+..+...+-
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl----~~d~~L~~ll~~L~~i~~~~~IRi~tr~~----~~~P~rit~el~ 213 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLM----AKDHELEWLLKRLEEIPHLVRLRIGTRLP----VVIPQRITDELC 213 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--Ccccc----CCHHHHHHHHHHHHhcCCccEEEeecCCC----ccCchhcCHHHH
Confidence 46677777776543 676543221 22110 11323333333321100013456677652 223444555566
Q ss_pred HHHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHcC
Q 017861 153 DSLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQG 188 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~G 188 (365)
+.|++.|...+.+... |...-.+++.++++.|++.|
T Consensus 214 ~~L~~~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aG 250 (331)
T TIGR00238 214 ELLASFELQLMLVTHINHCNEITEEFAEAMKKLRTVN 250 (331)
T ss_pred HHHHhcCCcEEEEccCCChHhCCHHHHHHHHHHHHcC
Confidence 6677666543332222 21112456667777777666
No 66
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=55.77 E-value=1.4e+02 Score=26.12 Aligned_cols=157 Identities=12% Similarity=0.072 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 017861 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (365)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (365)
+.++..++++.|.+.|+.-+=+.+.+ =+...+.+++ ..+.+.+=++........+....+++
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v~p~~-----------v~~~~~~l~~-------~~~~v~~~~~fp~g~~~~~~k~~eve 76 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVNPCF-----------VPLAREALKG-------SGVKVCTVIGFPLGATTTEVKVAEAR 76 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcHHH-----------HHHHHHHcCC-------CCcEEEEEEecCCCCCcHHHHHHHHH
Confidence 56888999999999877655443322 1222233322 24555555554333455666777788
Q ss_pred HHHHHhCCCceeEEEeCC---CCChHHHHHHHHHHHHc--CCcC--EEeecCCCHHHHHHHHHHHHhcCCceeeeeee--
Q 017861 153 DSLFRLGLSSVELYQLAG---IWGNEGFIDGLGDAVEQ--GLVK--AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN-- 223 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l~~---~~~~~~~~~~l~~l~~~--G~ir--~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~-- 223 (365)
+.++ +|.|-+|+++-.. ....+.+++.+.++++. |+.- -+...-.+.+.+..+.+.+.+.| .+++...
T Consensus 77 ~A~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~G--aD~IKTsTG 153 (203)
T cd00959 77 EAIA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAG--ADFIKTSTG 153 (203)
T ss_pred HHHH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC--CCEEEcCCC
Confidence 8777 6999999988722 12346677777777776 4332 23444456778888888777665 4666666
Q ss_pred cccccCCcccccHHHHHHHhCCeEEEe
Q 017861 224 YSLIYRKPEENGVKAACDELGITLIAY 250 (365)
Q Consensus 224 ~n~~~~~~~~~~~~~~~~~~gi~v~a~ 250 (365)
|....-..+.-.++...-+..++|.+.
T Consensus 154 ~~~~~at~~~v~~~~~~~~~~v~ik~a 180 (203)
T cd00959 154 FGPGGATVEDVKLMKEAVGGRVGVKAA 180 (203)
T ss_pred CCCCCCCHHHHHHHHHHhCCCceEEEe
Confidence 643333323212332222245666553
No 67
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=55.53 E-value=2e+02 Score=27.70 Aligned_cols=86 Identities=12% Similarity=-0.012 Sum_probs=53.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHH
Q 017861 164 ELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE 242 (365)
Q Consensus 164 Dl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~ 242 (365)
++.++-++.+. +-++.+.+|.++..|. ..|=+-++.+++..+++. --++++|+...-.--=.....+...|++
T Consensus 215 ~~~~iEeP~~~-~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~-----~~~d~~~~d~~~~GGit~~~~~~~~a~~ 288 (365)
T cd03318 215 GVELIEQPVPR-ENLDGLARLRSRNRVPIMADESVSGPADAFELARR-----GAADVFSLKIAKSGGLRRAQKVAAIAEA 288 (365)
T ss_pred CcceeeCCCCc-ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh-----CCCCeEEEeecccCCHHHHHHHHHHHHH
Confidence 44556222222 3467788888876666 566666788888887765 2377777765543211112248899999
Q ss_pred hCCeEEEeccccc
Q 017861 243 LGITLIAYCPIAQ 255 (365)
Q Consensus 243 ~gi~v~a~~~l~~ 255 (365)
+|+.++..+-...
T Consensus 289 ~gi~~~~~~~~~s 301 (365)
T cd03318 289 AGIALYGGTMLES 301 (365)
T ss_pred cCCceeecCcchh
Confidence 9999886544433
No 68
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=55.11 E-value=1.9e+02 Score=27.42 Aligned_cols=132 Identities=17% Similarity=0.066 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHC-CCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (365)
.+.++..+++++..+. ||+.+- ...|+..= .+.+.|-+.++......-...+-|.|+.. -..+..+...
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~Vi----lSGGDPl~--~~~~~L~~ll~~l~~i~~v~~iri~Tr~~----v~~p~rit~e 188 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVI----LTGGDPLV--LSPRRLGDIMARLAAIDHVKIVRFHTRVP----VADPARVTPA 188 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEE----EeCCCccc--CCHHHHHHHHHHHHhCCCccEEEEeCCCc----ccChhhcCHH
Confidence 4557777888877654 787542 11121100 01233333333221100013456777752 2233444445
Q ss_pred HHHHHHHhCCCceeEEEeCCCC---ChHHHHHHHHHHHHcCCcCEE------eecCCCHHHHHHHHHHHHhcCCc
Q 017861 151 LKDSLFRLGLSSVELYQLAGIW---GNEGFIDGLGDAVEQGLVKAV------GVSNYSEKRLRNAYEKLKKRGIP 216 (365)
Q Consensus 151 l~~SL~~Lg~d~iDl~~l~~~~---~~~~~~~~l~~l~~~G~ir~i------GvS~~~~~~l~~~~~~~~~~~~~ 216 (365)
+-+.|++.|.. ..+.+|... -.++++++++.|++.|..-.. |+ |.+.+.+.++.+.+...|+.
T Consensus 189 ll~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 189 LIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIK 260 (321)
T ss_pred HHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCe
Confidence 55566666632 223334221 146788888888888842211 22 45667777777666655553
No 69
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=54.66 E-value=57 Score=32.35 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=60.0
Q ss_pred HHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhc---CCceeeeeeecccccCCc
Q 017861 155 LFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR---GIPLASNQVNYSLIYRKP 231 (365)
Q Consensus 155 L~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~---~~~~~~~q~~~n~~~~~~ 231 (365)
.+.||++|. +++=|-.... ...+-...+-+.|-+..+|..+.+++++++.++.++.. +-||-+|-+ .++-++..
T Consensus 7 ~~~lgiryP-ii~gpMa~Gi-ss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~ 83 (418)
T cd04742 7 KEDYGLRYA-YVAGAMARGI-ASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPEL 83 (418)
T ss_pred HHHhCCCcc-EECCcccCCC-CCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchh
Confidence 466777765 2221211011 22334445567899999999999999999998888763 446777654 33323222
Q ss_pred ccccHHHHHHHhCCeEEEecc
Q 017861 232 EENGVKAACDELGITLIAYCP 252 (365)
Q Consensus 232 ~~~~~~~~~~~~gi~v~a~~~ 252 (365)
+.++++.+.++||.++..+.
T Consensus 84 -e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 84 -EEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred -HHHHHHHHHHcCCCEEEecc
Confidence 23589999999998776553
No 70
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=54.38 E-value=91 Score=28.44 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=36.4
Q ss_pred EeecCCCHH--HHHHHHHHHHhcCCceeeeeeeccc---ccCC---cccccHHHHHHHhCCeEEEeccccc
Q 017861 193 VGVSNYSEK--RLRNAYEKLKKRGIPLASNQVNYSL---IYRK---PEENGVKAACDELGITLIAYCPIAQ 255 (365)
Q Consensus 193 iGvS~~~~~--~l~~~~~~~~~~~~~~~~~q~~~n~---~~~~---~~~~~~~~~~~~~gi~v~a~~~l~~ 255 (365)
+|+|++... .+++.++.+.+.| ++.+++..+. +.+. ....++.+.++++|+.+.++.+...
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G--~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELG--YDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcC--CCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCccc
Confidence 677776543 3666666666665 4555543211 1111 1123588889999999998877554
No 71
>PRK14017 galactonate dehydratase; Provisional
Probab=54.09 E-value=2.2e+02 Score=27.72 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHCCCCeeecccc-----cCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEV-----YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~-----Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (365)
.++..+.+..+.+.|++.|=.--. ++.... ...-.+.| +++++.- -.++.|..=.. ..++.+...
T Consensus 125 ~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~--~~~d~~~i-~avr~~~----g~~~~l~vDaN---~~w~~~~A~ 194 (382)
T PRK14017 125 PADVAEAARARVERGFTAVKMNGTEELQYIDSPRK--VDAAVARV-AAVREAV----GPEIGIGVDFH---GRVHKPMAK 194 (382)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHH--HHHHHHHH-HHHHHHh----CCCCeEEEECC---CCCCHHHHH
Confidence 355667777788899998854210 000000 00001222 2344332 13444444442 234555432
Q ss_pred HHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccc
Q 017861 149 AALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 227 (365)
Q Consensus 149 ~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 227 (365)
+-+ +.|+.+ ++.++-++.+. +-++.+.+|.+...+. ..|=|-++...+..+++. .-++++|+..+.+
T Consensus 195 ~~~-~~l~~~-----~~~~iEeP~~~-~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~-----~a~d~v~~d~~~~ 262 (382)
T PRK14017 195 VLA-KELEPY-----RPMFIEEPVLP-ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA-----GGVDIIQPDLSHA 262 (382)
T ss_pred HHH-Hhhccc-----CCCeEECCCCc-CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc-----CCCCeEecCcccc
Confidence 222 233333 45555222222 2357788888887776 666777888888888765 2378888876543
Q ss_pred cCCcccccHHHHHHHhCCeEEEecc
Q 017861 228 YRKPEENGVKAACDELGITLIAYCP 252 (365)
Q Consensus 228 ~~~~~~~~~~~~~~~~gi~v~a~~~ 252 (365)
--=.....+.+.|+++||.++.++.
T Consensus 263 GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 263 GGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred CCHHHHHHHHHHHHHcCCeEeecCC
Confidence 2111112489999999999998754
No 72
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=53.24 E-value=2.1e+02 Score=27.40 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCC--CCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFG--AINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~--~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (365)
++..+.+..+.+.|++.|=.--..+.+..++ ...-+...=+++++.- ..++-|..=.. ..++.+...
T Consensus 125 ~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~----g~~~~l~vDaN---~~~~~~~A~---- 193 (352)
T cd03325 125 SDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAV----GPDIDIGVDFH---GRVSKPMAK---- 193 (352)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhh----CCCCEEEEECC---CCCCHHHHH----
Confidence 4555666777789999876422111000000 0000222223444432 13444444332 234444322
Q ss_pred HHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCc
Q 017861 153 DSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 231 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 231 (365)
+-++.|. .+++.++-.+.+ .+-++.+.+|+++.-+. ..|=|.++.+.+..+++. --++++|+.....---.
T Consensus 194 ~~~~~l~--~~~i~~iEeP~~-~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~v~~d~~~~GGit 265 (352)
T cd03325 194 DLAKELE--PYRLLFIEEPVL-PENVEALAEIAARTTIPIATGERLFSRWDFKELLED-----GAVDIIQPDISHAGGIT 265 (352)
T ss_pred HHHHhcc--ccCCcEEECCCC-ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh-----CCCCEEecCccccCCHH
Confidence 2233332 234555522222 23477888888886666 566667788888887654 23788888754432111
Q ss_pred ccccHHHHHHHhCCeEEEec
Q 017861 232 EENGVKAACDELGITLIAYC 251 (365)
Q Consensus 232 ~~~~~~~~~~~~gi~v~a~~ 251 (365)
....+.+.|+++|+.++.++
T Consensus 266 ~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 266 ELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHHHcCCcEeccC
Confidence 12248999999999998665
No 73
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=53.01 E-value=1.8e+02 Score=26.48 Aligned_cols=115 Identities=10% Similarity=-0.047 Sum_probs=60.9
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCC----CChHHHHHHHHHHHHcCCcCEEeecCCCHH
Q 017861 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 201 (365)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~----~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 201 (365)
++++.+.--.. ..++.+...+..+-..+-+++++|=|=.++|. .+..+++++-+.|+++|-+- +=-++.++-
T Consensus 60 ~~~~~lLPNTa---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v 135 (247)
T PF05690_consen 60 RSGYTLLPNTA---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPV 135 (247)
T ss_dssp CCTSEEEEE-T---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HH
T ss_pred ccCCEECCcCC---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHH
Confidence 35555444432 25778888888888899999999988888543 35789999999999999543 222333333
Q ss_pred HHHHHHHHHHhcCCceeeeeeecccccCCccc---ccHHHHHHHhCCeEEEe
Q 017861 202 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE---NGVKAACDELGITLIAY 250 (365)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~---~~~~~~~~~~gi~v~a~ 250 (365)
..+++.+. -+.+++.-=+++-....- ..+-..+++.+|.||.-
T Consensus 136 ~akrL~d~------GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvD 181 (247)
T PF05690_consen 136 LAKRLEDA------GCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVD 181 (247)
T ss_dssp HHHHHHHT------T-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEE
T ss_pred HHHHHHHC------CCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEe
Confidence 33343332 245555444443321100 01333344556666653
No 74
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=52.84 E-value=1e+02 Score=28.43 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCceeEEEeCC-C--------CChHHHHHHHHHHHHcCCcCEEeecCCCH---HHHHHHH
Q 017861 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLAG-I--------WGNEGFIDGLGDAVEQGLVKAVGVSNYSE---KRLRNAY 207 (365)
Q Consensus 140 ~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~-~--------~~~~~~~~~l~~l~~~G~ir~iGvS~~~~---~~l~~~~ 207 (365)
+.++.+.. ..+-+.|.++|+|+|++-+... . ....+.++.+.++.+ +..+..+++.... +.++.+
T Consensus 15 ~~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a- 91 (266)
T cd07944 15 WDFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPA- 91 (266)
T ss_pred ccCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHH-
Confidence 34556644 4555669999999999887721 1 112455555555543 3456555554432 333332
Q ss_pred HHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEe
Q 017861 208 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 250 (365)
Q Consensus 208 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~ 250 (365)
...+ ++.+.+.+..-+-+. -.+.+++++++|+.+...
T Consensus 92 ---~~~g--v~~iri~~~~~~~~~-~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 92 ---SGSV--VDMIRVAFHKHEFDE-ALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred ---hcCC--cCEEEEecccccHHH-HHHHHHHHHHCCCeEEEE
Confidence 2222 333333322211110 124677777777765543
No 75
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=52.70 E-value=70 Score=28.47 Aligned_cols=74 Identities=28% Similarity=0.341 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeee
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 220 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 220 (365)
...+.+.+++.++.+|.+. .++ .+...+.+...+.++.+.++| +..|=++..++..+...++.+...|+|+..+
T Consensus 13 ~~~~~~g~~~~a~~~g~~~-~~~-~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEV-EIV-FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEE-EEE-EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEE-EEe-CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 5568899999999999643 332 344456788889999999888 9999999887766666667777777765543
No 76
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=52.66 E-value=1.3e+02 Score=24.61 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=63.7
Q ss_pred HHHHHHHHHHH-HCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 017861 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (365)
Q Consensus 75 ~~~~~~l~~A~-~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (365)
+...+++..++ +.|+..+|+...=.. |+++-.+.+... +=+.|++-. .+.....+.+-+
T Consensus 16 d~g~~iv~~~l~~~GfeVi~lg~~~s~---------e~~v~aa~e~~a-----dii~iSsl~------~~~~~~~~~~~~ 75 (132)
T TIGR00640 16 DRGAKVIATAYADLGFDVDVGPLFQTP---------EEIARQAVEADV-----HVVGVSSLA------GGHLTLVPALRK 75 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEcCch------hhhHHHHHHHHH
Confidence 55667888777 569999987654333 777776665532 334444433 223333455555
Q ss_pred HHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHH
Q 017861 154 SLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 208 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~ 208 (365)
.|+..+.+ |+..+ -...+.+ ..++|++.|.-+.|+..+--.+.+..+.+
T Consensus 76 ~L~~~g~~--~i~vivGG~~~~~----~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 76 ELDKLGRP--DILVVVGGVIPPQ----DFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred HHHhcCCC--CCEEEEeCCCChH----hHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 57776754 44333 2211222 23568999999999998855455555443
No 77
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=52.33 E-value=79 Score=29.84 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=67.5
Q ss_pred CCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcc--cccHHHHHHHhCCeEEEecccccccccCCCCCC
Q 017861 188 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE--ENGVKAACDELGITLIAYCPIAQGALTGKYTPQ 265 (365)
Q Consensus 188 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~ 265 (365)
.++-.+-=++.+.+.++++.+.++.....+.+ ..+|=++.... +..+.+++++.++-++. +|.=++
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v--~~~nTIC~aT~~RQ~a~~~La~~vD~miVV-----Gg~~Ss----- 223 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQG--PPKDDICYATQNRQEAVKELAPQADLVIVV-----GSKNSS----- 223 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCccc--CCCCCcchhhHHHHHHHHHHHhhCCEEEEE-----CCCCCc-----
Confidence 45555555667778888877776543211111 12232332211 12477777777766665 331110
Q ss_pred CCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcC------CCHHHHHHHHHhcCCCcEEeecCCCHHHHHHHH
Q 017861 266 NPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS------KTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFA 332 (365)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~------~s~~qlal~~~l~~~~v~~i~g~~~~~~l~en~ 332 (365)
+ ..+|.++|++++ -++.++-..|+.....|.+..|+++|+.+-+.+
T Consensus 224 --------------N-------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 224 --------------N-------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred --------------c-------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 0 127788888776 378999999997766568999999999765543
No 78
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=52.18 E-value=2.4e+02 Score=27.75 Aligned_cols=150 Identities=11% Similarity=0.098 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH-HhccCCCCCCcEEE---EecCCCCCCCCCHHHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI-KERKQRDPEVEVTV---ATKFAALPWRLGRQSVLAA 150 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al-~~~~~~~~R~~~~I---~tK~~~~~~~~~~~~i~~~ 150 (365)
+.=.+=++.|++.|-..+-==+..|+ -..+-+.+ +..+... ..|=| ..+......+.+.+.+.+.
T Consensus 77 ~~E~~K~~~A~~~GADtiMDLStGgd---------l~~iR~~il~~s~vpv--GTVPiYqa~~~~~~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 77 EEEVEKALIAIKYGADTVMDLSTGGD---------LDEIRKAILDAVPVPV--GTVPIYQAAEKVHGAVEDMDEDDMFRA 145 (423)
T ss_pred HHHHHHHHHHHHcCCCeEeeccCCCC---------HHHHHHHHHHcCCCCc--cCccHHHHHHHhcCChhhCCHHHHHHH
Confidence 33345588999999875532233444 33344443 3222100 10000 0011011245778888888
Q ss_pred HHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCC
Q 017861 151 LKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 230 (365)
Q Consensus 151 l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 230 (365)
+++..+ |-+|.+-+|.- -+.+.++.++++| |..|+-+-...-+...+..- -.=||+...
T Consensus 146 ie~qa~----dGVDfmTiH~G----i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~-----------~~ENPlye~ 204 (423)
T TIGR00190 146 IEKQAK----DGVDFMTIHAG----VLLEYVERLKRSG--RITGIVSRGGAILAAWMLHH-----------HKENPLYKN 204 (423)
T ss_pred HHHHHH----hCCCEEEEccc----hhHHHHHHHHhCC--CccCeecCcHHHHHHHHHHc-----------CCcCchHHH
Confidence 887765 45777888843 3678899999999 66788877777766665431 123444443
Q ss_pred cccccHHHHHHHhCCeEEEecccccccccCCC
Q 017861 231 PEENGVKAACDELGITLIAYCPIAQGALTGKY 262 (365)
Q Consensus 231 ~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~ 262 (365)
.. .+++.|++++|.+. |+.|+-.|..
T Consensus 205 fD--~lLeI~~~yDVtlS----LGDglRPG~i 230 (423)
T TIGR00190 205 FD--YILEIAKEYDVTLS----LGDGLRPGCI 230 (423)
T ss_pred HH--HHHHHHHHhCeeee----ccCCcCCCcc
Confidence 33 49999999999874 6666554433
No 79
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=52.10 E-value=79 Score=29.56 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=67.1
Q ss_pred CCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcc--cccHHHHHHHhCCeEEEecccccccccCCCCCC
Q 017861 188 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE--ENGVKAACDELGITLIAYCPIAQGALTGKYTPQ 265 (365)
Q Consensus 188 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~ 265 (365)
.++-.+-=++.+.+.++.+.+.++.....+.+ +|=++.... +..+.+++++-++-++. +|.=+
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v----~~TIC~aT~~RQ~a~~~La~~vD~miVV-----Gg~~S------ 221 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVF----FNTICSATKKRQESAKELSKEVDVMIVI-----GGKHS------ 221 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCccccc----CCCcchhhhhHHHHHHHHHHhCCEEEEe-----cCCCC------
Confidence 44444444566778888777776543222222 333332211 12477777777776665 23111
Q ss_pred CCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC------CHHHHHHHHHhcCCCcEEeecCCCHHHHHHHH
Q 017861 266 NPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFA 332 (365)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~~qlal~~~l~~~~v~~i~g~~~~~~l~en~ 332 (365)
.+ ..+|.++|.+.+. ++.++-..|+.....|.+..|+|+|+.+-+.+
T Consensus 222 -------------sN-------T~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 222 -------------SN-------TQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred -------------cc-------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 00 1278888887763 78888889998876568999999999876554
No 80
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=51.83 E-value=2.7e+02 Score=28.13 Aligned_cols=154 Identities=13% Similarity=0.097 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 017861 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (365)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (365)
+++-....++.|.+.||..|=..+.-.+-+ +.+..+. +.++... .-.+.|+-... ..++.+++.+.++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~-----n~~~ai~-~ak~~G~---~~~~~i~yt~s---p~~t~~y~~~~a~ 170 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPR-----NIQQALR-AVKKTGK---EAQLCIAYTTS---PVHTLNYYLSLVK 170 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHH-----HHHHHHH-HHHHcCC---EEEEEEEEEeC---CcCcHHHHHHHHH
Confidence 346677789999999999988877665521 1344443 3444331 01233333332 2466777777666
Q ss_pred HHHHHhCCCceeEEEeCCC---CChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHH-HhcCCceeeeeeeccccc
Q 017861 153 DSLFRLGLSSVELYQLAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL-KKRGIPLASNQVNYSLIY 228 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l~~~---~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~~~~~~q~~~n~~~ 228 (365)
+ +..+|. |.+.|.|. ....++.+.+..+++...+ -||+-.|+...+.-+...+ -+.| .+.+..-.+.+-
T Consensus 171 ~-l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt~GlA~An~laAieAG--ad~vD~ai~g~g 243 (468)
T PRK12581 171 E-LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHATSGISQMTYLAAVEAG--ADRIDTALSPFS 243 (468)
T ss_pred H-HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCCCccHHHHHHHHHHcC--CCEEEeeccccC
Confidence 6 456885 56777443 3356666666677665544 5899988765544332221 2233 445555555544
Q ss_pred CCccc---ccHHHHHHHhCC
Q 017861 229 RKPEE---NGVKAACDELGI 245 (365)
Q Consensus 229 ~~~~~---~~~~~~~~~~gi 245 (365)
..... ..++..++..|+
T Consensus 244 ~gagN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 244 EGTSQPATESMYLALKEAGY 263 (468)
T ss_pred CCcCChhHHHHHHHHHhcCC
Confidence 43221 236666665544
No 81
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=51.57 E-value=1.5e+02 Score=27.72 Aligned_cols=101 Identities=19% Similarity=0.103 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEe--CCCCC-hHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCcee
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQL--AGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 218 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l--~~~~~-~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 218 (365)
++.+ -+..+-+.|.++|+++|++-.+ |...+ ..+.++.+..+.+...++...+. .+...++++.+. |+ +
T Consensus 23 ~s~e-~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g~--~ 94 (287)
T PRK05692 23 IPTA-DKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----GA--D 94 (287)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----CC--C
Confidence 4444 3455666799999999999744 22122 23345666666554456665555 467777777654 22 2
Q ss_pred eeeeeccc--c------cCCcc-----cccHHHHHHHhCCeEEEe
Q 017861 219 SNQVNYSL--I------YRKPE-----ENGVKAACDELGITLIAY 250 (365)
Q Consensus 219 ~~q~~~n~--~------~~~~~-----~~~~~~~~~~~gi~v~a~ 250 (365)
.+.+-++. . ....+ -.+.+++++++|+.+.++
T Consensus 95 ~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 95 EVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 22222221 1 11111 124889999999988643
No 82
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=51.40 E-value=1.2e+02 Score=27.88 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEe
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQL 168 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l 168 (365)
++.+... .+-+.|.++|+++|++-+.
T Consensus 19 ~~~~~k~-~i~~~L~~~Gv~~iEvg~~ 44 (263)
T cd07943 19 FTLEQVR-AIARALDAAGVPLIEVGHG 44 (263)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeecC
Confidence 4444433 3344477777777777643
No 83
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=50.83 E-value=2e+02 Score=26.26 Aligned_cols=50 Identities=14% Similarity=0.026 Sum_probs=28.3
Q ss_pred cHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017861 235 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 300 (365)
Q Consensus 235 ~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 300 (365)
..++.|++.|+.++....... . . .+ -....++...+.++.+.++|+++|+
T Consensus 98 ~~i~~a~~lG~~~v~~~~~~~--~----~---~~-------~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLAGYDV--Y----Y---EE-------KSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHhCCCEEEECCccc--c----c---cc-------ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 478888888888886521100 0 0 00 0123445556666777777777764
No 84
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.82 E-value=2.3e+02 Score=27.13 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecc
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA 95 (365)
.+.++..++++..-+.||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 456889999999999999999995
No 85
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=50.34 E-value=73 Score=29.78 Aligned_cols=120 Identities=20% Similarity=0.283 Sum_probs=70.7
Q ss_pred HHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCc-c-cccHHHHHHHhCCeEEEeccccccc
Q 017861 180 GLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP-E-ENGVKAACDELGITLIAYCPIAQGA 257 (365)
Q Consensus 180 ~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~-~-~~~~~~~~~~~gi~v~a~~~l~~G~ 257 (365)
.++.|....++-.+-=++.+.+.++.+.+.++... +..-..+ +|=++... . +..+.+++++-++-++. +|.
T Consensus 146 d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~-~~~~~~~-~nTIC~AT~~RQ~a~~~la~~vD~miVV-----Gg~ 218 (280)
T TIGR00216 146 DLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARV-PQKEVPV-FNTICYATQNRQDAVKELAPEVDLMIVI-----GGK 218 (280)
T ss_pred HHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhC-CCcCCCC-CCCcccccHHHHHHHHHHHhhCCEEEEE-----CCC
Confidence 34444434555555555677788877777765432 1011111 23222211 1 12477777776666655 231
Q ss_pred ccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcC------CCHHHHHHHHHhcCCCcEEeecCCCHHHHHHH
Q 017861 258 LTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS------KTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEF 331 (365)
Q Consensus 258 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~------~s~~qlal~~~l~~~~v~~i~g~~~~~~l~en 331 (365)
=+ .+ ..+|.++|++++ .++.++-..|+-....|.+..|+|+|+.+-+.
T Consensus 219 nS-------------------sN-------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~e 272 (280)
T TIGR00216 219 NS-------------------SN-------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEE 272 (280)
T ss_pred CC-------------------ch-------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHH
Confidence 10 01 127888888876 37899999999877656899999999987654
Q ss_pred H
Q 017861 332 A 332 (365)
Q Consensus 332 ~ 332 (365)
+
T Consensus 273 V 273 (280)
T TIGR00216 273 V 273 (280)
T ss_pred H
Confidence 4
No 86
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=49.89 E-value=2.3e+02 Score=26.85 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHcCCcCEEeecCC----CHHHH-HHHHHHHHhcCCceeeeeeecccccCC---cccccHHHHHHHhCC
Q 017861 174 NEGFIDGLGDAVEQGLVKAVGVSNY----SEKRL-RNAYEKLKKRGIPLASNQVNYSLIYRK---PEENGVKAACDELGI 245 (365)
Q Consensus 174 ~~~~~~~l~~l~~~G~ir~iGvS~~----~~~~l-~~~~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~~~~gi 245 (365)
...+.+.++.+++-|.|+.|.+.+- ++..+ +++++.+.+.+.. .++-+..| +.. .....-++.+++.||
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~--h~~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHAN--HARELTAEARAACARLIDAGI 228 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCC--ChhhcCHHHHHHHHHHHHcCC
Confidence 4678888888998888876666441 22222 2333334443432 22333332 221 111246778888999
Q ss_pred eEEEecccccc
Q 017861 246 TLIAYCPIAQG 256 (365)
Q Consensus 246 ~v~a~~~l~~G 256 (365)
.+...+++..|
T Consensus 229 ~v~~q~vLl~g 239 (321)
T TIGR03822 229 PMVSQSVLLRG 239 (321)
T ss_pred EEEEEeeEeCC
Confidence 99999999877
No 87
>PRK13753 dihydropteroate synthase; Provisional
Probab=49.68 E-value=2.2e+02 Score=26.56 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEe---CCCC--C----hHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHh
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQL---AGIW--G----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 212 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l---~~~~--~----~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 212 (365)
.+.+.+.+..++.+ .-|.|-||+=-- |... + ...+...++.+++.+ ..|.|.++.++.++++++.
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~--~~ISIDT~~~~va~~al~a--- 95 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQM--HRVSIDSFQPETQRYALKR--- 95 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCC--CcEEEECCCHHHHHHHHHc---
Confidence 35566666666544 557788886665 3221 1 334457788888775 2489999999999988765
Q ss_pred cCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccc
Q 017861 213 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 213 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~ 254 (365)
|..+ +|-+ +-+. .+ .+.+.+.+.+++++.+...+
T Consensus 96 -Gadi-INDV--sg~~-d~---~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 96 -GVGY-LNDI--QGFP-DP---ALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred -CCCE-EEeC--CCCC-ch---HHHHHHHHcCCCEEEEecCC
Confidence 2322 1111 2222 21 37888999999999887654
No 88
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.53 E-value=2.1e+02 Score=26.18 Aligned_cols=50 Identities=22% Similarity=0.168 Sum_probs=27.4
Q ss_pred cHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017861 235 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 300 (365)
Q Consensus 235 ~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 300 (365)
..++.|++.|+.++...+...+ + .. -.+..++...+.++.+.++|+++|+
T Consensus 103 ~~i~~a~~lG~~~i~~~~~~~~-----~-------~~----~~~~~~~~~~~~l~~l~~~A~~~GV 152 (283)
T PRK13209 103 KAIQLAQDLGIRVIQLAGYDVY-----Y-------EQ----ANNETRRRFIDGLKESVELASRASV 152 (283)
T ss_pred HHHHHHHHcCCCEEEECCcccc-----c-------cc----cHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3678888888888865321100 0 00 0123334455566677777777664
No 89
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=49.16 E-value=1.1e+02 Score=27.83 Aligned_cols=190 Identities=13% Similarity=0.141 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhCCCceeEEEeC----CCCChHHHHHHHHHHHHcCCcCEEeecCC-----CHHHHHHHHHHHHhcCCcee
Q 017861 148 LAALKDSLFRLGLSSVELYQLA----GIWGNEGFIDGLGDAVEQGLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLA 218 (365)
Q Consensus 148 ~~~l~~SL~~Lg~d~iDl~~l~----~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-----~~~~l~~~~~~~~~~~~~~~ 218 (365)
.+.+++.|+-+| +|||.+=+- ...+.+-+-+.++-+++-|---+.| -++ ....+++.++.|+..| |+
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lG--f~ 86 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELG--FE 86 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcC--CC
Confidence 367888888888 899999992 2223333344444455566555666 211 1234555666666554 67
Q ss_pred eeeeecccccCCccc-ccHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCch-HHHhhHHHHHHH------
Q 017861 219 SNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTA-EYLRNLQPLLNR------ 290 (365)
Q Consensus 219 ~~q~~~n~~~~~~~~-~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------ 290 (365)
++.+.-..++-..+. ..+++.++++|..+..= ++. |. . .... .+.+ .+.+...+.+++
T Consensus 87 ~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~E--vG~-----K~-~-----~~~~-~~~~~~~i~~~~~~LeAGA~~Vi 152 (237)
T TIGR03849 87 AVEISDGSMEISLEERCNLIERAKDNGFMVLSE--VGK-----KS-P-----EKDS-ELTPDDRIKLINKDLEAGADYVI 152 (237)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHhCCCeEecc--ccc-----cC-C-----cccc-cCCHHHHHHHHHHHHHCCCcEEE
Confidence 776655544433222 25888888888887742 111 10 0 0000 1222 222222222221
Q ss_pred --HH------HHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhh----CC-CCCHHHHHHHHHhhhccCC
Q 017861 291 --IK------ELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGAL----GW-RLTDEEVNELRSMASEIKP 356 (365)
Q Consensus 291 --l~------~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~----~~-~L~~e~~~~l~~~~~~~~~ 356 (365)
-+ -|.+.-|.--..+.-..+-.-| . -++.-+.+++|....+..+ +. ..+++|+=.|+.+...++.
T Consensus 153 iEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~-~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~LE~LR~GLrg 231 (237)
T TIGR03849 153 IEGRESGKNIGLFDEKGNVKEDELDVLAENVD-INKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISLETLRRGLRG 231 (237)
T ss_pred EeehhcCCCcceeCCCCCCchHHHHHHHhhCC-hhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHHHHHhccccc
Confidence 01 1111111122333323333334 5 7888999999999998865 32 4678999889888877663
No 90
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=49.07 E-value=46 Score=33.44 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=59.8
Q ss_pred CCcEEEEecCCCCCCCCCHHH----------HHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEee
Q 017861 126 EVEVTVATKFAALPWRLGRQS----------VLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGV 195 (365)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~----------i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGv 195 (365)
+.++||+.=+|.-. .--|.. ++-.-.+.-+|+.+.|+|.+. .+.++.++..++.+++|+..+||+
T Consensus 157 ~G~~~lTaGLGGMg-GAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~----~~ldeal~~~~~a~~~~~~~SIg~ 231 (545)
T TIGR01228 157 KGKWVLTAGLGGMG-GAQPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT----DSLDEALARAEEAKAEGKPISIGL 231 (545)
T ss_pred ceeEEEEeCCCccc-cccHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc----CCHHHHHHHHHHHHHcCCceEEEe
Confidence 57888888876521 000000 111123345788899999653 368999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCceee--eeee
Q 017861 196 SNYSEKRLRNAYEKLKKRGIPLAS--NQVN 223 (365)
Q Consensus 196 S~~~~~~l~~~~~~~~~~~~~~~~--~q~~ 223 (365)
-..-.+.++++.+. ++.|++ -|..
T Consensus 232 ~GNaadv~~~l~~r----~i~pDlvtDQTS 257 (545)
T TIGR01228 232 LGNAAEVLPELLKR----GVVPDVVTDQTS 257 (545)
T ss_pred eccHHHHHHHHHHc----CCCCCCcCCCCc
Confidence 99877788877654 455544 4553
No 91
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=48.51 E-value=2.2e+02 Score=27.06 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEe----CCCCChHHHHHHHHHHHHcCCcCEEeecC--CCHHHHHHHHHHHHhcCCce
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQL----AGIWGNEGFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYEKLKKRGIPL 217 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l----~~~~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~~~l~~~~~~~~~~~~~~ 217 (365)
.+.+++..+..-++||.....+-+- +..|--..+-+.|++|.++| ++.|=|.. |-.+.+|-+.+ +
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~e--------i 276 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETLYE--------I 276 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHHCC--------C
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHHHH--------H
Confidence 5678888888889999877666666 44466678899999999999 66655443 22233333311 1
Q ss_pred eeeeeecccccCCcccccHHHHHHHhCCeEEEeccccc
Q 017861 218 ASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 255 (365)
Q Consensus 218 ~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~ 255 (365)
++ +..+.++++|+.-..+.|--+
T Consensus 277 di---------------e~re~~~~~G~~~~~~ip~lN 299 (316)
T PF00762_consen 277 DI---------------EYRELAEEAGGEEFVRIPCLN 299 (316)
T ss_dssp CC---------------HHHHHHHHHTCCEEEE---ST
T ss_pred HH---------------HHHHHHHHcCCceEEEeCCCC
Confidence 11 367888999997777766654
No 92
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.20 E-value=1.7e+02 Score=28.59 Aligned_cols=85 Identities=9% Similarity=0.110 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHHHcCCcCEEee-----c--CCCHHHHHHHHHHHHhcC----CceeeeeeecccccCCccc-------
Q 017861 172 WGNEGFIDGLGDAVEQGLVKAVGV-----S--NYSEKRLRNAYEKLKKRG----IPLASNQVNYSLIYRKPEE------- 233 (365)
Q Consensus 172 ~~~~~~~~~l~~l~~~G~ir~iGv-----S--~~~~~~l~~~~~~~~~~~----~~~~~~q~~~n~~~~~~~~------- 233 (365)
++.+++++++.+..++-. |.|-+ . |.+.++.+++.+.++... .+..+|-++||+.......
T Consensus 252 ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i 330 (371)
T PRK14461 252 YPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERV 330 (371)
T ss_pred CCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHH
Confidence 468899999998865432 23333 2 667888888887765321 1678999999997543221
Q ss_pred ccHHHHHHHhCCeEEEeccccccc
Q 017861 234 NGVKAACDELGITLIAYCPIAQGA 257 (365)
Q Consensus 234 ~~~~~~~~~~gi~v~a~~~l~~G~ 257 (365)
....+.++++||.+..+...|..+
T Consensus 331 ~~F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 331 TTFQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred HHHHHHHHHCCceEEEeCCCCcCh
Confidence 136777888999999998887543
No 93
>PLN02363 phosphoribosylanthranilate isomerase
Probab=48.20 E-value=75 Score=29.28 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHHhCCCceeEEEeCCC-C-ChHHHHHHHHHHHHcCCcCEEeec-CCCHHHHHHHHHHHHhcCCceee
Q 017861 143 GRQSVLAALKDSLFRLGLSSVELYQLAGI-W-GNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLAS 219 (365)
Q Consensus 143 ~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~-~-~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~ 219 (365)
+.+.++.+. ++|.||+=+++.+.. . -..+....+.+......++.+||. +-+++.+.++++. ..+++
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-----~~ld~ 125 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADS-----SDLEL 125 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-----cCCCE
Confidence 455555544 589999999877432 1 123444444444433246779986 6788888877665 56899
Q ss_pred eeeec
Q 017861 220 NQVNY 224 (365)
Q Consensus 220 ~q~~~ 224 (365)
+|+.-
T Consensus 126 VQLHG 130 (256)
T PLN02363 126 VQLHG 130 (256)
T ss_pred EEECC
Confidence 99964
No 94
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=48.15 E-value=2.5e+02 Score=26.76 Aligned_cols=158 Identities=14% Similarity=0.136 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS-FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s-~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (365)
.++..+.++.+++.|++.|=.--..+.... .+.....+.+ +++++.- .+++-|..=.. ..++.+...+- -
T Consensus 121 ~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~----g~~~~l~vDan---~~~~~~~A~~~-~ 191 (341)
T cd03327 121 LDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAV----GYDVDLMLDCY---MSWNLNYAIKM-A 191 (341)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHh----CCCCcEEEECC---CCCCHHHHHHH-H
Confidence 355666777788999998754211111000 0000012223 3344322 12333333321 23455543332 2
Q ss_pred HHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCc
Q 017861 153 DSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 231 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 231 (365)
+.|+. +++.++-++.+ .+-++.+.+|++...|. ..|=+.++.+.+.++++. .-++++|+..+-.--=.
T Consensus 192 ~~l~~-----~~~~~iEeP~~-~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~d~~~~GGit 260 (341)
T cd03327 192 RALEK-----YELRWIEEPLI-PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQPDVNWVGGIT 260 (341)
T ss_pred HHhhh-----cCCccccCCCC-ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEecCccccCCHH
Confidence 23333 35566623222 23467788888887776 666677788888888765 34788888765432111
Q ss_pred ccccHHHHHHHhCCeEEEec
Q 017861 232 EENGVKAACDELGITLIAYC 251 (365)
Q Consensus 232 ~~~~~~~~~~~~gi~v~a~~ 251 (365)
+...+.+.|+++|+.++.+.
T Consensus 261 ~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 261 ELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHcCCeecccc
Confidence 12258999999999988653
No 95
>PRK05414 urocanate hydratase; Provisional
Probab=47.64 E-value=52 Score=33.23 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=59.8
Q ss_pred CCcEEEEecCCCCCCCCCHHH----------HHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEee
Q 017861 126 EVEVTVATKFAALPWRLGRQS----------VLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGV 195 (365)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~----------i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGv 195 (365)
+.++||++=+|.-. .--|.. ++-.-.+.-+|+.+.|+|.+. .+.++.++.+++.+++|+..+||+
T Consensus 166 ~G~~~lTaGLGGMg-GAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~----~~Ldeal~~~~~a~~~~~~~SIg~ 240 (556)
T PRK05414 166 AGRLVLTAGLGGMG-GAQPLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA----DDLDEALALAEEAKAAGEPLSIGL 240 (556)
T ss_pred ceeEEEEecCCccc-cccHHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc----CCHHHHHHHHHHHHHcCCceEEEE
Confidence 57888888876521 000000 111223445788899999653 368999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCceee--eeee
Q 017861 196 SNYSEKRLRNAYEKLKKRGIPLAS--NQVN 223 (365)
Q Consensus 196 S~~~~~~l~~~~~~~~~~~~~~~~--~q~~ 223 (365)
-..-.+.++++.+. ++.|++ -|..
T Consensus 241 ~GNaadv~~~l~~~----~i~pDlvtDQTS 266 (556)
T PRK05414 241 LGNAADVLPELVRR----GIRPDLVTDQTS 266 (556)
T ss_pred eccHHHHHHHHHHc----CCCCCccCcCcc
Confidence 99877777777654 455544 3543
No 96
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=47.32 E-value=62 Score=30.52 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEe-CC-C-----CChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCc
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQL-AG-I-----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 216 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l-~~-~-----~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 216 (365)
.+.+++.+.+-+++.|+|++=++.+ +- . .+..+++++|++..+++.-. .++..+...... ..|
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl--~~g-- 200 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAAL--EAG-- 200 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHH--HTT--
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHH--HCC--
Confidence 4678999999999999986555544 21 1 13446899999999877432 233333322221 222
Q ss_pred eeeee-eecccccCCcccccHHHHHHHhCCeEEEe---cccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHH
Q 017861 217 LASNQ-VNYSLIYRKPEENGVKAACDELGITLIAY---CPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIK 292 (365)
Q Consensus 217 ~~~~q-~~~n~~~~~~~~~~~~~~~~~~gi~v~a~---~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (365)
+.++- ++-+..+ .+ ++.+.++++|+.+..- ++++.|+ .=-+-++.
T Consensus 201 ~~fvN~tP~~~a~-~P---~l~ela~~~gvpi~GdD~KT~lAApl---------------------------vlDLirl~ 249 (295)
T PF07994_consen 201 VPFVNGTPSNIAD-DP---ALVELAEEKGVPIAGDDGKTPLAAPL---------------------------VLDLIRLA 249 (295)
T ss_dssp EEEEE-SSSTTTT-SH---HHHHHHHHHTEEEEESSBS-HHHHHH---------------------------HHHHHHHH
T ss_pred CCeEeccCccccC-CH---HHHHHHHHcCCCeecchHhhhhhhHH---------------------------HHHHHHHH
Confidence 33322 2222221 12 4999999999998752 1122111 11133778
Q ss_pred HHHHHcCCCHHHHHHHHHhcCCCcEEeecCCCHHHH
Q 017861 293 ELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQA 328 (365)
Q Consensus 293 ~ia~~~~~s~~qlal~~~l~~~~v~~i~g~~~~~~l 328 (365)
++|.+.|+.-.+-.++|.+..|. +=+|......+
T Consensus 250 ~la~r~g~~Gv~~~ls~ffK~P~--~~~g~~~~~~l 283 (295)
T PF07994_consen 250 KLALRRGMGGVQEWLSFFFKSPM--VPPGPPQEHDL 283 (295)
T ss_dssp HHHHHTTS-EEHHHHHHHBSS-T----TTSTT--HH
T ss_pred HHHHHcCCCChhHHHHHHhcCCC--ccCCCCCCCcH
Confidence 89999999889999999999883 33455554444
No 97
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=47.23 E-value=2.2e+02 Score=26.09 Aligned_cols=120 Identities=17% Similarity=0.075 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHH-HHhccCCC--CCCcEEEEecCCCCCC---CCCHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF-IKERKQRD--PEVEVTVATKFAALPW---RLGRQSVL 148 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~a-l~~~~~~~--~R~~~~I~tK~~~~~~---~~~~~~i~ 148 (365)
+++.+.+..++..|.+.| .+|.|.| -. +|.. ..+...+. +++.+.-..-.|.... .-..+.-.
T Consensus 36 ~~av~~~~~~l~~ggrl~----~~GaGtS------g~-la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~ 104 (257)
T cd05007 36 ARAVDAAAERLRAGGRLI----YVGAGTS------GR-LGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDE 104 (257)
T ss_pred HHHHHHHHHHHHcCCEEE----EEcCcHH------HH-HHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChH
Confidence 445556667778899988 7888866 32 2211 11222111 2333333322221000 00011111
Q ss_pred HHHHHHHHHhCCCceeEEEeC-CCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHH
Q 017861 149 AALKDSLFRLGLSSVELYQLA-GIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 206 (365)
Q Consensus 149 ~~l~~SL~~Lg~d~iDl~~l~-~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 206 (365)
..-.+.+...+...=|+++.- ..-...+++++++.+++.| +.-|++++.....+.+.
T Consensus 105 ~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~ 162 (257)
T cd05007 105 EAGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARARG-ALTIGIACNPGSPLLQL 162 (257)
T ss_pred HHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 122334455666667888772 1234778999999999998 77899999876666554
No 98
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=47.06 E-value=2.6e+02 Score=26.59 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH---
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL--- 148 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~--- 148 (365)
.+.++..+.++.+.+.|++.|--......... ...+-+.++....+. -++ ++ +..++..+.
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~------~~~~~~li~~Ik~~~--~~i----~~----~~~s~~ei~~~~ 135 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLG------LDYYEDLFRAIKARF--PHI----HI----HSFSPVEIVYIA 135 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC------HHHHHHHHHHHHHHC--CCc----CC----CCCCHHHHHHHh
Confidence 56788888898888999987765322111111 222223333221000 011 11 112232221
Q ss_pred -------HHHHHHHHHhCCCceeEEE---e---------CCCCChHHHHHHHHHHHHcCCcCE----EeecCCCHHHHHH
Q 017861 149 -------AALKDSLFRLGLSSVELYQ---L---------AGIWGNEGFIDGLGDAVEQGLVKA----VGVSNYSEKRLRN 205 (365)
Q Consensus 149 -------~~l~~SL~~Lg~d~iDl~~---l---------~~~~~~~~~~~~l~~l~~~G~ir~----iGvS~~~~~~l~~ 205 (365)
+..-+.|++.|++.++..- + |.....++.+++++.+++.|.--. +|+ +.+.+++.+
T Consensus 136 ~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 136 KKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred ccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 4444567777887776321 1 111246677888888888884322 343 455556555
Q ss_pred HHHHHHh
Q 017861 206 AYEKLKK 212 (365)
Q Consensus 206 ~~~~~~~ 212 (365)
.+..+++
T Consensus 215 ~l~~l~~ 221 (340)
T TIGR03699 215 HLERIRE 221 (340)
T ss_pred HHHHHHH
Confidence 5554443
No 99
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=46.99 E-value=4.2e+02 Score=30.28 Aligned_cols=107 Identities=8% Similarity=0.023 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHH-cCCc--CEEeecCCCHHHHHHHHHHHHhcCCceeee
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVE-QGLV--KAVGVSNYSEKRLRNAYEKLKKRGIPLASN 220 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~-~G~i--r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 220 (365)
.+.+.+..++ +..-|-+.||+-.=....+.++.+..+..+.+ .-.+ --|-|-+++++.++.+++.+. .+.-+|
T Consensus 367 ~~~a~~~A~~-qve~GA~iIDVn~~~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~---G~~IIN 442 (1178)
T TIGR02082 367 YDEALDIAKQ-QVENGAQILDINVDYGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQ---GKCIVN 442 (1178)
T ss_pred HHHHHHHHHH-HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcC---CCCEEE
Confidence 3444433333 34668899997654222233444444444443 3223 347888999999999987642 233343
Q ss_pred eeecccccCCcccccHHHHHHHhCCeEEEecccccc
Q 017861 221 QVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 221 q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
-+..--.+.... ++++.++++|..++++.--..|
T Consensus 443 sIs~~~g~~~~~--~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 443 SISLKDGEERFI--ETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred eCCCCCCCccHH--HHHHHHHHhCCCEEEEecCCCC
Confidence 332211122212 4899999999999998654444
No 100
>PRK12928 lipoyl synthase; Provisional
Probab=46.70 E-value=1.8e+02 Score=27.27 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHHcC---CcC---EEeecCCCHHHHHHHHHHHHhcCCceeeeee-eccc-------ccC----Ccccc
Q 017861 173 GNEGFIDGLGDAVEQG---LVK---AVGVSNYSEKRLRNAYEKLKKRGIPLASNQV-NYSL-------IYR----KPEEN 234 (365)
Q Consensus 173 ~~~~~~~~l~~l~~~G---~ir---~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~-~~n~-------~~~----~~~~~ 234 (365)
..++.++.++.+++.| .++ -+|+ +-+.+++.+.+..++..++ +.+.+ +|.. +.+ ..+ .
T Consensus 186 t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~--d~v~i~~Yl~p~~~~~~v~~~~~~~~f-~ 261 (290)
T PRK12928 186 DYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGC--DRLTIGQYLRPSLAHLPVQRYWTPEEF-E 261 (290)
T ss_pred CHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCC--CEEEEEcCCCCCccCCceeeccCHHHH-H
Confidence 4788999999999998 444 3677 6677888877777766543 33332 3321 111 111 2
Q ss_pred cHHHHHHHhCCeEEEeccccc
Q 017861 235 GVKAACDELGITLIAYCPIAQ 255 (365)
Q Consensus 235 ~~~~~~~~~gi~v~a~~~l~~ 255 (365)
.+-..+.+.|...++.+||-.
T Consensus 262 ~~~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 262 ALGQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHHHcCCceeEecCccc
Confidence 477788888999999988874
No 101
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=46.61 E-value=2.4e+02 Score=26.07 Aligned_cols=131 Identities=8% Similarity=0.008 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHCCCCeeeccccc------C-CCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC-CCCCC
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVY------G-SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLG 143 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Y------g-~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~-~~~~~ 143 (365)
.+.++..++.....+.||..||...-- + .+. ..++.+..+.+..+ +.++...+..-.. .+..-
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~-----~~~e~i~~~~~~~~----~~~l~~~~r~~~~~~~~~~ 88 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNE-----DPWERLRELRKAMP----NTPLQMLLRGQNLVGYRHY 88 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCC-----CHHHHHHHHHHhCC----CCceehhcccccccCccCC
Confidence 355777888888889999999986311 0 011 12455544433322 2344433332110 12222
Q ss_pred HHHH-HHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEee-----cCCCHHHHHHHHHHHHhcC
Q 017861 144 RQSV-LAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGV-----SNYSEKRLRNAYEKLKKRG 214 (365)
Q Consensus 144 ~~~i-~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGv-----S~~~~~~l~~~~~~~~~~~ 214 (365)
|..+ +..++. ....|+|.|-++.-. .+.+.+.+.++.+++.|+.-...+ +.++++.+.++.+.+...|
T Consensus 89 p~~~~~~di~~-~~~~g~~~iri~~~~--~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G 162 (275)
T cd07937 89 PDDVVELFVEK-AAKNGIDIFRIFDAL--NDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG 162 (275)
T ss_pred CcHHHHHHHHH-HHHcCCCEEEEeecC--ChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 3333 334444 345577766664432 357788889999999996544444 3566777777766665555
No 102
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=46.33 E-value=1.9e+02 Score=26.05 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHHHHcCCcCEEeecCC-CHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEec
Q 017861 173 GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 251 (365)
Q Consensus 173 ~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~ 251 (365)
..+++.++|..++ +..|..-.. +..|..++-..|++.|.+ .|.|+.....+ +++...-+.|..++..+
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~-ell~e~~~~Gf~~~Iv~ 142 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPE-ELLEEMVEAGFEAIIVA 142 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHH-HHHHHHHHcCCeEEEEE
Confidence 3556666666666 444544332 445666666667776654 24454433222 58888888999888888
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHH
Q 017861 252 PIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 303 (365)
Q Consensus 252 ~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~ 303 (365)
+-+.|+-. .+ .++.+ ..+.++.+..+.++||+.|+
T Consensus 143 Vsa~gL~~-~~---------lGr~i-------~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 143 VSAEGLDE-SW---------LGRRI-------DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred EeccCCCh-HH---------hCCcc-------CHHHHHHHHHHHHhcCCCcc
Confidence 88877421 00 01112 22456688888899988763
No 103
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=45.93 E-value=2.2e+02 Score=25.40 Aligned_cols=74 Identities=24% Similarity=0.247 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHh---CCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceee
Q 017861 144 RQSVLAALKDSLFRL---GLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 219 (365)
Q Consensus 144 ~~~i~~~l~~SL~~L---g~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 219 (365)
...+.+.+++.++++ |. .++++++....+.+...+.++.+..+ ++..|=+.......+...+..+...++|+.+
T Consensus 14 ~~~~~~~i~~~~~~~~~~g~-~~~l~i~~~~~~~~~~~~~~~~~~~~-~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~ 90 (272)
T cd06300 14 RAQMLDEFKAQAKELKKAGL-ISEFIVTSADGDVAQQIADIRNLIAQ-GVDAIIINPASPTALNPVIEEACEAGIPVVS 90 (272)
T ss_pred HHHHHHHHHHHHHhhhccCC-eeEEEEecCCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhhhHHHHHHHHHCCCeEEE
Confidence 456777788888877 62 24666664334556667777777776 6666666555444344344444455555433
No 104
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=45.60 E-value=59 Score=30.40 Aligned_cols=112 Identities=19% Similarity=0.249 Sum_probs=64.1
Q ss_pred CCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCccc--ccHHHHHHHhCCeEEEecccccccccCCCCCC
Q 017861 188 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE--NGVKAACDELGITLIAYCPIAQGALTGKYTPQ 265 (365)
Q Consensus 188 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~--~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~ 265 (365)
+++-.+-=++++.+.++++.+.++....... -..+|=++..... ..+.+++++-++-++. +|.-
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~--~~~~nTIC~aT~~RQ~a~~~La~~vD~miVI-----Gg~~------- 220 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELE--GPVFNTICYATQNRQEAARELAKEVDAMIVI-----GGKN------- 220 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE---SCC-S--CHHHHHHHHHHHHHCCSSEEEEE-----S-TT-------
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCcccc--CCCCCCCCHhHHHHHHHHHHHHhhCCEEEEe-----cCCC-------
Confidence 4677777778888888888887765432221 1233333322211 2466666665655544 2310
Q ss_pred CCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC------CHHHHHHHHHhcCCCcEEeecCCCHHHHHHHH
Q 017861 266 NPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFA 332 (365)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~~qlal~~~l~~~~v~~i~g~~~~~~l~en~ 332 (365)
..+ ..+|.++|++++. ++.++-..|+-....|.+..|+|+|+.+-+.+
T Consensus 221 ------------SsN-------T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 221 ------------SSN-------TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp -------------HH-------HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred ------------Ccc-------HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 111 2378889998873 78999999999887678999999999877664
No 105
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=45.49 E-value=2.8e+02 Score=26.54 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecc
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA 95 (365)
.+.++..+++...-+.|+..|+.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 456888999999889999999995
No 106
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=45.27 E-value=2.9e+02 Score=26.56 Aligned_cols=15 Identities=7% Similarity=0.020 Sum_probs=10.9
Q ss_pred HHHHHHHCCCCeeec
Q 017861 80 AFDTSLDNGITFFDT 94 (365)
Q Consensus 80 ~l~~A~~~Gin~~DT 94 (365)
..+.|.+.|+..+|-
T Consensus 142 aA~~a~~aGfDgVei 156 (353)
T cd02930 142 CAALAREAGYDGVEI 156 (353)
T ss_pred HHHHHHHcCCCEEEE
Confidence 334557789999986
No 107
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=45.01 E-value=3e+02 Score=26.64 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhCCCceeEEEe--CCC----CChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeee
Q 017861 147 VLAALKDSLFRLGLSSVELYQL--AGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 220 (365)
Q Consensus 147 i~~~l~~SL~~Lg~d~iDl~~l--~~~----~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 220 (365)
-+..+-+.|.++|+++|++-.. |.. .+.+++++.+.+ ...++..++. .+...++.+++. +. +.+
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~----g~--~~v 138 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAA----GA--KEV 138 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHc----Cc--CEE
Confidence 4566777799999999998765 221 234455555543 3335555554 477888888764 22 222
Q ss_pred eeeccc--------ccCCccc-----ccHHHHHHHhCCeEEEec
Q 017861 221 QVNYSL--------IYRKPEE-----NGVKAACDELGITLIAYC 251 (365)
Q Consensus 221 q~~~n~--------~~~~~~~-----~~~~~~~~~~gi~v~a~~ 251 (365)
.+.++. ++...++ .+++++++++|+.+.++-
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 222111 1111111 258889999999885433
No 108
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=44.91 E-value=2.6e+02 Score=25.94 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHCCCCeeecc---cccCCC-CCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTA---EVYGSR-ASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA---~~Yg~g-~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (365)
.++..+..+.+.+.|+..||.- +.+..+ ...+ .+.+.+-+.++.... .-++-|..|++.. . +.+ .
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~---~~~~Pv~vKl~~~---~--~~~-~ 169 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKK---ATDVPVIVKLTPN---V--TDI-V 169 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHh---ccCCCEEEEeCCC---c--hhH-H
Confidence 4677778888888899999862 222110 0000 125666666665431 1267788998542 1 222 2
Q ss_pred HHHHHHHHhCCCceeEEEe-C----CC---C--------------ChHHHHHHHHHHHHcCCcCEEeecCC-CHHHHHHH
Q 017861 150 ALKDSLFRLGLSSVELYQL-A----GI---W--------------GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNA 206 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l-~----~~---~--------------~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~ 206 (365)
.+-+.++..|.|.|++.-- . +. . ...-.++.+.++++.=.|.-||+... +++.+.++
T Consensus 170 ~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~ 249 (296)
T cd04740 170 EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEF 249 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 3345677889988877411 0 00 0 01224677777777667889999986 77888887
Q ss_pred HHHHHhcCCceeeeeeeccccc-CC---cccccHHHHHHHhCC
Q 017861 207 YEKLKKRGIPLASNQVNYSLIY-RK---PEENGVKAACDELGI 245 (365)
Q Consensus 207 ~~~~~~~~~~~~~~q~~~n~~~-~~---~~~~~~~~~~~~~gi 245 (365)
+.. -.+.+|+---++. +. ....++.++.+++|.
T Consensus 250 l~~------GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 250 LMA------GASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHc------CCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 753 2577776444333 11 111245556666654
No 109
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=44.83 E-value=2.1e+02 Score=26.03 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=81.1
Q ss_pred HHHHHHHHHhccCCCCCC--cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEe----CCC-CChHHHHHHHH
Q 017861 110 ETLLGRFIKERKQRDPEV--EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQL----AGI-WGNEGFIDGLG 182 (365)
Q Consensus 110 E~~lG~al~~~~~~~~R~--~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l----~~~-~~~~~~~~~l~ 182 (365)
..++.++++... .. +. .+.++..+.. .......+...+.+.+++.+.+.- -+.+ ... ...+.+...+.
T Consensus 69 ~~v~~~a~~~~~-~~-~~~~~~~l~iNis~--~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~~~~~~~~~~~l~ 143 (256)
T COG2200 69 RWVLEEACRQLR-TW-PRAGPLRLAVNLSP--VQLRSPGLVDLLLRLLARLGLPPH-RLVLEITESALIDDLDTALALLR 143 (256)
T ss_pred HHHHHHHHHHHH-hh-hhcCCceEEEEcCH--HHhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchhhcCHHHHHHHHH
Confidence 566777776543 11 12 3777777754 223345566678888888886543 2223 111 23457888999
Q ss_pred HHHHcCCcCEEeecCCC--HHHHHHHHHHHHhcCCceeeeeeecccccCCcc-------cccHHHHHHHhCCeEEEec
Q 017861 183 DAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAYC 251 (365)
Q Consensus 183 ~l~~~G~ir~iGvS~~~--~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-------~~~~~~~~~~~gi~v~a~~ 251 (365)
.|++.| | .|.+..|. ...+..+.+ .+++++-+.-+++..-.. -..++..|++.|+.++|-+
T Consensus 144 ~L~~~G-~-~ialDDFGtG~ssl~~L~~------l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEG 213 (256)
T COG2200 144 QLRELG-V-RIALDDFGTGYSSLSYLKR------LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEG 213 (256)
T ss_pred HHHHCC-C-eEEEECCCCCHHHHHHHhh------CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEee
Confidence 999999 3 47777774 345555543 478888777666542211 1258999999999999853
No 110
>PRK08508 biotin synthase; Provisional
Probab=44.82 E-value=2.6e+02 Score=25.91 Aligned_cols=10 Identities=20% Similarity=0.710 Sum_probs=6.9
Q ss_pred HHHHHHHHHh
Q 017861 341 DEEVNELRSM 350 (365)
Q Consensus 341 ~e~~~~l~~~ 350 (365)
++|++.|+++
T Consensus 261 ~~d~~~~~~~ 270 (279)
T PRK08508 261 KKDIEKLKSL 270 (279)
T ss_pred HHHHHHHHHc
Confidence 6777777665
No 111
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=44.20 E-value=2.2e+02 Score=24.88 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHCCCCeeec
Q 017861 73 KMKAAKAAFDTSLDNGITFFDT 94 (365)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DT 94 (365)
|++.+.+++..+++.|+...|.
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i 30 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDI 30 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH
Confidence 5688999999999999775553
No 112
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=44.02 E-value=3.2e+02 Score=26.78 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=54.3
Q ss_pred HHhCCCceeEEEe-CCC----CChHHHHHHHHHHHHcCCcC-EEeec---CCCHHHHHHHHHHHHhcCCceeeeeeeccc
Q 017861 156 FRLGLSSVELYQL-AGI----WGNEGFIDGLGDAVEQGLVK-AVGVS---NYSEKRLRNAYEKLKKRGIPLASNQVNYSL 226 (365)
Q Consensus 156 ~~Lg~d~iDl~~l-~~~----~~~~~~~~~l~~l~~~G~ir-~iGvS---~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 226 (365)
+.++.|-|-|-+. .++ ...++..+.+++..+.=.+- -|+=| ..+++.++.+++.+... ++-++-.....
T Consensus 150 ~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~--kpLL~SAt~e~ 227 (389)
T TIGR00381 150 KEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGE--RCLLASANLDL 227 (389)
T ss_pred HHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCC--CcEEEecCchh
Confidence 6677544443333 111 12446777777764443333 23322 45788899988876532 23222221110
Q ss_pred ccCCcccccHHHHHHHhCCeEEEecccccccc
Q 017861 227 IYRKPEENGVKAACDELGITLIAYCPIAQGAL 258 (365)
Q Consensus 227 ~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L 258 (365)
+ .. .+.+.|+++|..+++++|..-+.+
T Consensus 228 ---N-y~-~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 228 ---D-YE-KIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred ---h-HH-HHHHHHHHhCCeEEEEcCCcHHHH
Confidence 1 12 489999999999999998876643
No 113
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=43.86 E-value=2e+02 Score=27.31 Aligned_cols=164 Identities=14% Similarity=0.162 Sum_probs=87.0
Q ss_pred HHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHH----------------HHHHHHHHhcCCc
Q 017861 154 SLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL----------------RNAYEKLKKRGIP 216 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l----------------~~~~~~~~~~~~~ 216 (365)
....+.-+.+-+++- -+..+.++-+..|+.+.+.| +|++|+.=...+.+ +++++.+++.|+.
T Consensus 86 ~~~a~~~gk~~~~l~~ega~~~~~dl~~L~~~~~~G-vR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~LgIi 164 (313)
T COG2355 86 IRLALKEGKIGAVLHMEGAEPLGDDLDKLELFHALG-VRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNELGII 164 (313)
T ss_pred HHHHhhcCceeEEEeccCcccccccHHHHHHHHHhC-ceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHhcCCE
Confidence 333444455666555 34456777899999999999 99998762211111 2233334444555
Q ss_pred eeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHH
Q 017861 217 LASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGE 296 (365)
Q Consensus 217 ~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~ 296 (365)
+++-++... ...+.+.--...+++...-+..+.. ..|...+. .+++|++
T Consensus 165 iDlSH~s~k---------t~~Dvl~~s~~PviaSHSN~~al~~------------h~RNl~D~----------qlkaI~~ 213 (313)
T COG2355 165 IDLSHLSDK---------TFWDVLDLSKAPVVASHSNARALVD------------HPRNLSDE----------QLKAIAE 213 (313)
T ss_pred EEecccCCc---------cHHHHHhccCCceEEecCCchhccC------------CCCCCCHH----------HHHHHHh
Confidence 555433221 1333333344555554444444321 12233333 4555555
Q ss_pred HcCC------------------CHHHH--HHHHHhcCCCc-E------------EeecCCCHHHHHHHHhhhCC-CCCHH
Q 017861 297 NYSK------------------TSTQV--GLNWLLAQDNV-V------------PIPGAKNAEQAAEFAGALGW-RLTDE 342 (365)
Q Consensus 297 ~~~~------------------s~~ql--al~~~l~~~~v-~------------~i~g~~~~~~l~en~~a~~~-~L~~e 342 (365)
.-|+ |+..+ .+.|+...-++ . +..|..++..+...++++.. -++++
T Consensus 214 ~gGvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~~~l~~l~~~L~~~G~~e~ 293 (313)
T COG2355 214 TGGVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDVGKLPNLTAALIERGYSEE 293 (313)
T ss_pred cCCEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcChhHHHHHHHHHHHcCCCHH
Confidence 4331 11111 23444443222 1 23477888889999998855 59999
Q ss_pred HHHHHHH
Q 017861 343 EVNELRS 349 (365)
Q Consensus 343 ~~~~l~~ 349 (365)
+++.|-.
T Consensus 294 ~i~~i~~ 300 (313)
T COG2355 294 EIEKIAG 300 (313)
T ss_pred HHHHHHH
Confidence 9988754
No 114
>PRK08609 hypothetical protein; Provisional
Probab=43.72 E-value=3.9e+02 Score=27.69 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=85.6
Q ss_pred HHHHHHHHHHCCCCeeecccccCCCC-CCCCCchHHHHHHHH---HhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 017861 77 AKAAFDTSLDNGITFFDTAEVYGSRA-SFGAINSETLLGRFI---KERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (365)
Q Consensus 77 ~~~~l~~A~~~Gin~~DTA~~Yg~g~-s~~~~~sE~~lG~al---~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (365)
..++++.|.+.|+.+|=.++++.... ..| .+...+-..+ +......+.=+|++..-+.. .++....-.+
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~--~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i-----~~~g~~d~~~ 423 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANG--LTEERLLEQAEEIKALNEKYPEIDILSGIEMDI-----LPDGSLDYDD 423 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCC--CCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEee-----cCCcchhhcH
Confidence 34489999999999998888863210 000 1133332222 22111110113444443332 1222222233
Q ss_pred HHHHHhCCCceeEEEe--CCCC--ChHHHHHHHHHHHHcCCcCEEeecC------C--CHHHHHHHHHHHHhcCCceeee
Q 017861 153 DSLFRLGLSSVELYQL--AGIW--GNEGFIDGLGDAVEQGLVKAVGVSN------Y--SEKRLRNAYEKLKKRGIPLASN 220 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l--~~~~--~~~~~~~~l~~l~~~G~ir~iGvS~------~--~~~~l~~~~~~~~~~~~~~~~~ 220 (365)
..|+. +|.++. |... +.+++++.+.++.+.|.+.-||=-. + -...++++.+.+...|..+.+|
T Consensus 424 ~~L~~-----~D~vI~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEIN 498 (570)
T PRK08609 424 EVLAE-----LDYVIAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELN 498 (570)
T ss_pred HHHHh-----hCEEEEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEc
Confidence 34443 454544 6432 3577888999999999888776332 1 1355677777766666545444
Q ss_pred eeecccccCCcccccHHHHHHHhCCeEEEecccc
Q 017861 221 QVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 221 q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~ 254 (365)
-+.+.... ...++..|.+.|+.+ +.++-+
T Consensus 499 ---a~~~r~~~-~~~~~~~~~e~Gv~i-~igSDA 527 (570)
T PRK08609 499 ---ANPNRLDL-SAEHLKKAQEAGVKL-AINTDA 527 (570)
T ss_pred ---CCccccCc-cHHHHHHHHHcCCEE-EEECCC
Confidence 33332111 225899999999964 444444
No 115
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=43.54 E-value=2.7e+02 Score=25.69 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHHHHHCCCCeeecccccCC
Q 017861 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGS 100 (365)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~ 100 (365)
..+|.+...+.+++.++.|++-+=.....|.
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE 46 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGE 46 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 3578899999999999999998765554444
No 116
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=43.47 E-value=1.2e+02 Score=27.18 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCCce-eeee-eecccccCCc--ccccHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCC
Q 017861 199 SEKRLRNAYEKLKKRGIPL-ASNQ-VNYSLIYRKP--EENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGR 274 (365)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~-~~~q-~~~n~~~~~~--~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~ 274 (365)
++.+++.+ +.+.|+.+ ++|- .+||.++... +..++.++++..|-.-+...|+..|--.+.
T Consensus 50 p~a~vka~---Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~------------- 113 (272)
T COG4130 50 PAAEVKAL---AEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT------------- 113 (272)
T ss_pred CHHHHHHH---HHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc-------------
Confidence 45666655 55556543 3332 2667666432 224699999999999999999987622111
Q ss_pred CCchHHHhhHHHHHHHHHHHHHHcCC
Q 017861 275 IYTAEYLRNLQPLLNRIKELGENYSK 300 (365)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~ia~~~~~ 300 (365)
. ...+.....+.+|+.|-.++|+
T Consensus 114 ~---vr~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 114 A---VRREDLVEALKALKPILDEYGI 136 (272)
T ss_pred c---cchHHHHHHHHHhhHHHHHhCc
Confidence 0 1122344556677777777764
No 117
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=43.28 E-value=3.3e+02 Score=27.73 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=55.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEe--CCCC-----ChHHHHHHHH
Q 017861 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQL--AGIW-----GNEGFIDGLG 182 (365)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l--~~~~-----~~~~~~~~l~ 182 (365)
++.|-++|++...+.+.+-++|.|-+ ..+-|-..++...+.++.+.++++.+ |... ..+.+++.+.
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC-------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv 142 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSC-------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLV 142 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC-------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHH
Confidence 77777888765433323445565555 24555555566666666555778888 3321 1223333332
Q ss_pred H-H----------HHcCCcCEEeecCC---CHHHHHHHHHHHHhcCCce
Q 017861 183 D-A----------VEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPL 217 (365)
Q Consensus 183 ~-l----------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~ 217 (365)
+ + .+.++|--||.++. .+..+.++.+.++..|+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 143 RRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred HHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 2 1 12456778888763 3455666666666666544
No 118
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=43.15 E-value=3.4e+02 Score=26.86 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceee
Q 017861 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 219 (365)
Q Consensus 140 ~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 219 (365)
.+.+.+.+.+.+++..+ |-+|.+-+|.- -+.+.++.++++| |..|+-+-...-+...+..=
T Consensus 138 ~~mt~d~~~~~ie~qa~----~GVDfmTiHcG----i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~n--------- 198 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAK----DGVDFMTIHCG----VTRETLERLKKSG--RIMGIVSRGGSFLAAWMLHN--------- 198 (431)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc----hhHHHHHHHHhcC--CccCeecCCHHHHHHHHHHc---------
Confidence 45778888888887765 55777888853 2677889999999 66788877777766655431
Q ss_pred eeeecccccCCcccccHHHHHHHhCCeEEEecccccccccCCC
Q 017861 220 NQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 262 (365)
Q Consensus 220 ~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~ 262 (365)
..=||+..... .+++.|++++|.+. |+.|+-.|..
T Consensus 199 --~~ENPlye~fD--~lLeI~~~yDVtlS----LGDglRPG~i 233 (431)
T PRK13352 199 --NKENPLYEHFD--YLLEILKEYDVTLS----LGDGLRPGCI 233 (431)
T ss_pred --CCcCchHHHHH--HHHHHHHHhCeeee----ccCCcCCCcc
Confidence 12344444333 49999999999874 6666554433
No 119
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=43.01 E-value=47 Score=30.34 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCCCceeEEEeC----CCCChHHHHHHHHHHHHcCCcCEEeecCCC----HHHHHHHHHHHHhcCCceee
Q 017861 148 LAALKDSLFRLGLSSVELYQLA----GIWGNEGFIDGLGDAVEQGLVKAVGVSNYS----EKRLRNAYEKLKKRGIPLAS 219 (365)
Q Consensus 148 ~~~l~~SL~~Lg~d~iDl~~l~----~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~----~~~l~~~~~~~~~~~~~~~~ 219 (365)
...+++.|+-.| +|||++=+- ...+.+-+-+.++-+++-|---+.|=.-+. ...+++.++.|+..| |++
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lG--f~~ 100 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELG--FDA 100 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT---SE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcC--CCE
Confidence 367888888888 999999992 223333344445555555644455522211 234566666676655 667
Q ss_pred eeeecccccCCccc-ccHHHHHHHhCCeEEE
Q 017861 220 NQVNYSLIYRKPEE-NGVKAACDELGITLIA 249 (365)
Q Consensus 220 ~q~~~n~~~~~~~~-~~~~~~~~~~gi~v~a 249 (365)
+.+.-..++-..+. ..++..+++.|..|++
T Consensus 101 IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 101 IEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp EEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred EEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 66655544433322 2588888888887765
No 120
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=42.91 E-value=1.7e+02 Score=26.00 Aligned_cols=82 Identities=16% Similarity=0.057 Sum_probs=50.9
Q ss_pred HHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCC-cCEEeecC-CCHHHHHHHHHHHHhcCCceeeeeeecccccCCcc
Q 017861 155 LFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGL-VKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE 232 (365)
Q Consensus 155 L~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~-~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~ 232 (365)
...+|.||+=+++.+.. +-.-..+...++.+.-. ++.+||.. .+.+.+.++++. ..++++|+.-. +
T Consensus 18 a~~~gad~iG~If~~~S-pR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-----~~ld~VQlHG~------e 85 (208)
T COG0135 18 AAKAGADYIGFIFVPKS-PRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEE-----LGLDAVQLHGD------E 85 (208)
T ss_pred HHHcCCCEEEEEEcCCC-CCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-----cCCCEEEECCC------C
Confidence 45689999999998421 11112233333333333 88999885 477788888776 57999998754 2
Q ss_pred cccHHHHHHHhC-CeEE
Q 017861 233 ENGVKAACDELG-ITLI 248 (365)
Q Consensus 233 ~~~~~~~~~~~g-i~v~ 248 (365)
..+.++..+++. +.++
T Consensus 86 ~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 86 DPEYIDQLKEELGVPVI 102 (208)
T ss_pred CHHHHHHHHhhcCCceE
Confidence 223566666654 5554
No 121
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=42.62 E-value=3.2e+02 Score=26.35 Aligned_cols=155 Identities=10% Similarity=-0.015 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 017861 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (365)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (365)
+.++..+.++.+.+.|++.|=.- .++...- ....+.+ +++++.-. .++-|.-=.. ..++.+...+ +-
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~---~~di~~i-~~vR~~~G----~~~~l~vDan---~~~~~~~A~~-~~ 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVV---RRDLKAC-LAVREAVG----PDMRLMHDGA---HWYSRADALR-LG 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhH---HHHHHHH-HHHHHHhC----CCCeEEEECC---CCcCHHHHHH-HH
Confidence 34667777888889999988552 1211000 0001222 33444221 3444443331 2345554332 22
Q ss_pred HHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCC-HHHHHHHHHHHHhcCCceeeeeeecccccCC
Q 017861 153 DSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYS-EKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 230 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~-~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 230 (365)
+.|+.++ +.++-++.+.++ ++.+.+|+++-.|. ..|=+-++ .+++.++++. --++++|+..+..--=
T Consensus 210 ~~l~~~~-----l~~iEeP~~~~d-~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~-----~a~d~v~~d~~~~GGi 278 (368)
T cd03329 210 RALEELG-----FFWYEDPLREAS-ISSYRWLAEKLDIPILGTEHSRGALESRADWVLA-----GATDFLRADVNLVGGI 278 (368)
T ss_pred HHhhhcC-----CCeEeCCCCchh-HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh-----CCCCEEecCccccCCH
Confidence 3344444 445523333333 47788888886665 23334456 7777777665 2478888876653211
Q ss_pred cccccHHHHHHHhCCeEEEec
Q 017861 231 PEENGVKAACDELGITLIAYC 251 (365)
Q Consensus 231 ~~~~~~~~~~~~~gi~v~a~~ 251 (365)
.....+...|+++|+.++.++
T Consensus 279 t~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 279 TGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHHHHcCCEEEEEC
Confidence 112248999999999998654
No 122
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.19 E-value=1.6e+02 Score=28.62 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=56.8
Q ss_pred CChHHHHHHHHH-HHHcC---CcCEEeec--CCCHHHHHHHHHHHHhcCCceeeeeeecccccCCccc-------ccHHH
Q 017861 172 WGNEGFIDGLGD-AVEQG---LVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKA 238 (365)
Q Consensus 172 ~~~~~~~~~l~~-l~~~G---~ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~~~~ 238 (365)
++.+++++++.+ +.+.| +|+++=+. |.+.++++++.+.++.. ++.++-++||++...... ..+.+
T Consensus 259 ~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~--~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~ 336 (368)
T PRK14456 259 YPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF--FCKINLIDYNSIVNIKFEPVCSSTRERFRD 336 (368)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC--CCeeEEeeeccCCCCCCCCCCHHHHHHHHH
Confidence 356888998876 44556 23444444 45667788888877543 467788899987654332 13677
Q ss_pred HHHHhCCeEEEecccccc
Q 017861 239 ACDELGITLIAYCPIAQG 256 (365)
Q Consensus 239 ~~~~~gi~v~a~~~l~~G 256 (365)
..+++|+.+......|.-
T Consensus 337 ~L~~~Gi~vtvR~~~G~d 354 (368)
T PRK14456 337 RLLDAGLQVTVRKSYGTT 354 (368)
T ss_pred HHHHCCCcEEeeCCCCcc
Confidence 778899999998887754
No 123
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=42.13 E-value=3.2e+02 Score=26.22 Aligned_cols=152 Identities=13% Similarity=0.047 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (365)
.++..+-...+.+.|++.|=.-- |.... ...+.+ +++++.- -+++-|..=.. ..++.+...+-+ +
T Consensus 139 ~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~----~d~~~v-~~vRe~~----G~~~~l~vDaN---~~~~~~~A~~~~-~ 203 (352)
T cd03328 139 DDRLREQLSGWVAQGIPRVKMKI--GRDPR----RDPDRV-AAARRAI----GPDAELFVDAN---GAYSRKQALALA-R 203 (352)
T ss_pred HHHHHHHHHHHHHCCCCEEEeec--CCCHH----HHHHHH-HHHHHHc----CCCCeEEEECC---CCCCHHHHHHHH-H
Confidence 35555666667789999764311 21100 001233 3444432 13443433331 234555433322 3
Q ss_pred HHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHc--CCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCC
Q 017861 154 SLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQ--GLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 230 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~--G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 230 (365)
.|+.+ ++.++-.+.+ .+-++.+.+|++. -.|. ..|=|-++.+.+.++++. --.+++|+...-.--=
T Consensus 204 ~l~~~-----~~~~~EeP~~-~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~-----~a~div~~d~~~~GGi 272 (352)
T cd03328 204 AFADE-----GVTWFEEPVS-SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEA-----HAVDVLQADVTRCGGV 272 (352)
T ss_pred HHHHh-----CcchhhCCCC-hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHc-----CCCCEEecCccccCCH
Confidence 33444 5555623222 2346778888877 3333 566677788888888765 3478888876643211
Q ss_pred cccccHHHHHHHhCCeEEEec
Q 017861 231 PEENGVKAACDELGITLIAYC 251 (365)
Q Consensus 231 ~~~~~~~~~~~~~gi~v~a~~ 251 (365)
.+...+.+.|+.+|+.++.+.
T Consensus 273 t~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 273 TGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHHHHHcCCeeccCc
Confidence 112248999999999999763
No 124
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=42.00 E-value=99 Score=27.76 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
.+.+++.++++.|.+.|++-+=..++|-.|+ +..+.+.|++.+
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~-------------------------------------y~n~~~~v~~~~ 59 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHGR-------------------------------------YENPIEKVKEKA 59 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccCCc-------------------------------------cCChHHHHHHHH
Confidence 4579999999999999999776666664431 445566777777
Q ss_pred HHHHHHhCCCceeEEEeCC
Q 017861 152 KDSLFRLGLSSVELYQLAG 170 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~~ 170 (365)
++.-+.+...-+|+-.+|.
T Consensus 60 ~~ln~~~~~~aidl~v~pG 78 (254)
T COG4464 60 NQLNEILKKEAIDLKVLPG 78 (254)
T ss_pred HHHHHHHHhhcCCceeccC
Confidence 7777777777778777764
No 125
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=41.76 E-value=11 Score=36.34 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=34.7
Q ss_pred HcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeeccc-ccCCcccccHHHHHHHhCCe
Q 017861 186 EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL-IYRKPEENGVKAACDELGIT 246 (365)
Q Consensus 186 ~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~-~~~~~~~~~~~~~~~~~gi~ 246 (365)
=-|+||++||--++.+.+.++...-+ .-+..+.+..+ +|+... .+++.+++.||+
T Consensus 262 CVGriRYlGVlLYDaDrv~eaAs~~~----e~dly~~Q~~ifLDP~DP--~Vi~~A~k~Gip 317 (513)
T COG1140 262 CVGRIRYLGVLLYDADRVEEAASTEN----EKDLYERQLDVFLDPHDP--AVIEQARKDGIP 317 (513)
T ss_pred hhcceeeeeeeeecHHHHHHhhcCcc----HHHHHHHHHhhhcCCCCH--HHHHHHHHcCCc
Confidence 35999999999999999988765422 12333333333 233222 377778777775
No 126
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=41.54 E-value=1.4e+02 Score=30.56 Aligned_cols=47 Identities=15% Similarity=0.064 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEeC-CCCChHHHHHHHHHHHHcCCcC
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQLA-GIWGNEGFIDGLGDAVEQGLVK 191 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l~-~~~~~~~~~~~l~~l~~~G~ir 191 (365)
.+...+.+++.+++||++ +|.+... +..-...+.+.+++|+++|.|-
T Consensus 67 ~~~~~~~~~~~l~~LgI~-~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY 114 (530)
T TIGR00398 67 VDKYHEEFKDDWKWLNIS-FDRFIRTTDEEHKEIVQKIFQKLKENGYIY 114 (530)
T ss_pred HHHHHHHHHHHHHHhCCC-CCCCccCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 356778899999999997 5765432 2112556888999999999984
No 127
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=41.49 E-value=98 Score=27.48 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=42.4
Q ss_pred HHHhCCCceeEEEeCCC-C-ChHHHHHHHHHHHHcCCcCEEeec-CCCHHHHHHHHHHHHhcCCceeeeeeecc
Q 017861 155 LFRLGLSSVELYQLAGI-W-GNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 225 (365)
Q Consensus 155 L~~Lg~d~iDl~~l~~~-~-~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 225 (365)
+..+|.|++=+++.+.. . -..+....+.+.. .+.+..+||. +-+++.+.++++. ..++++|++-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-----VPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence 34689999999876432 1 1233334333332 3568999988 5577888877665 46899999653
No 128
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=41.34 E-value=1e+02 Score=30.32 Aligned_cols=82 Identities=12% Similarity=0.027 Sum_probs=53.2
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHH
Q 017861 164 ELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE 242 (365)
Q Consensus 164 Dl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~ 242 (365)
++.++-++.+ -++.+.+|++...+. ..|-|-++.+++..+++. .-++++|......--=.+...+.+.|++
T Consensus 239 ~l~~iEeP~~---d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~~~GGit~~~kia~~A~~ 310 (395)
T cd03323 239 VLAYLEDPCG---GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHHFWGGMRGSVRVAQVCET 310 (395)
T ss_pred CCCEEECCCC---CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeeccccccCHHHHHHHHHHHHH
Confidence 5566622222 477788888877666 566666677777777654 2477877776543211112258999999
Q ss_pred hCCeEEEeccc
Q 017861 243 LGITLIAYCPI 253 (365)
Q Consensus 243 ~gi~v~a~~~l 253 (365)
+|+.++.++..
T Consensus 311 ~gi~~~~h~~~ 321 (395)
T cd03323 311 WGLGWGMHSNN 321 (395)
T ss_pred cCCeEEEecCc
Confidence 99999987754
No 129
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=40.93 E-value=1.1e+02 Score=31.52 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCCceeEEEeC-CCCChHHHHHHHHHHHHcCCcC
Q 017861 145 QSVLAALKDSLFRLGLSSVELYQLA-GIWGNEGFIDGLGDAVEQGLVK 191 (365)
Q Consensus 145 ~~i~~~l~~SL~~Lg~d~iDl~~l~-~~~~~~~~~~~l~~l~~~G~ir 191 (365)
+...+.+.+.+++||++ .|.+.-. +..-.+.+.+.+.+|.++|.|-
T Consensus 73 ~~~~~~~~~~~~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y 119 (556)
T PRK12268 73 DKYHEEHKEDFKKLGIS-YDLFTRTTSPNHHEVVQEFFLKLYENGYIY 119 (556)
T ss_pred HHHHHHHHHHHHHcCCc-CCCCcCCCCHHHHHHHHHHHHHHHHCCCeE
Confidence 45678889999999997 4754332 1122678899999999999875
No 130
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=40.77 E-value=37 Score=23.87 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhc
Q 017861 290 RIKELGENYSKTSTQVGLNWLLA 312 (365)
Q Consensus 290 ~l~~ia~~~~~s~~qlal~~~l~ 312 (365)
.+.+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 56789999999999999999864
No 131
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=40.53 E-value=2.9e+02 Score=25.30 Aligned_cols=105 Identities=9% Similarity=0.104 Sum_probs=57.8
Q ss_pred chhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 017861 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (365)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (365)
+.+|.+...+.++..++.|++-|-.....|.+.+....+=++++-.+.+... +++-|..-++. .+.+...+
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-----~~~~vi~gv~~----~~~~~~i~ 83 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-----GRVPVIAGVGA----NSTREAIE 83 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-----CCCeEEEecCC----ccHHHHHH
Confidence 3578899999999999999998876665555432111111245555555432 34445544432 22222222
Q ss_pred HHHHHHHHhCCCceeEEEe--CCC--CChHHHHHHHHHHHHc
Q 017861 150 ALKDSLFRLGLSSVELYQL--AGI--WGNEGFIDGLGDAVEQ 187 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l--~~~--~~~~~~~~~l~~l~~~ 187 (365)
.. +..+.+|. |-+++ |.. ...+++++.+.++.+.
T Consensus 84 ~a-~~a~~~Ga---d~v~v~pP~y~~~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 84 LA-RHAEEAGA---DGVLVVPPYYNKPSQEGIVAHFKAVADA 121 (281)
T ss_pred HH-HHHHHcCC---CEEEECCCcCCCCCHHHHHHHHHHHHhc
Confidence 22 23466665 44444 221 2356777777777665
No 132
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=40.06 E-value=1.5e+02 Score=26.91 Aligned_cols=78 Identities=12% Similarity=0.229 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHcCC-cCEEeecCC------CHHHHHHHHHHHHhcCCceeeeeeecccccCCc----ccccHHHHHHH
Q 017861 174 NEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EENGVKAACDE 242 (365)
Q Consensus 174 ~~~~~~~l~~l~~~G~-ir~iGvS~~------~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~----~~~~~~~~~~~ 242 (365)
....++.+++|++.|. |..||+-.| ++..+...++.....|.++.+-++.+....... .-..+++.|.+
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~ 214 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLA 214 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHc
Confidence 3467888999999998 999998655 467788888877777777777666665432100 11258888888
Q ss_pred hC--CeEEEec
Q 017861 243 LG--ITLIAYC 251 (365)
Q Consensus 243 ~g--i~v~a~~ 251 (365)
+. .+|+-|+
T Consensus 215 ~p~v~gi~~Wg 225 (254)
T smart00633 215 HPAVTGVTVWG 225 (254)
T ss_pred CCCeeEEEEeC
Confidence 74 5666663
No 133
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=39.90 E-value=3.5e+02 Score=26.04 Aligned_cols=88 Identities=9% Similarity=-0.089 Sum_probs=55.6
Q ss_pred eeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHH
Q 017861 163 VELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACD 241 (365)
Q Consensus 163 iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~ 241 (365)
+++.++-++.+. +-++.+.+|++...+. ..|=|-++.+++.++++. .-++++|+...-.--=.....+...|+
T Consensus 213 ~~~~~iEeP~~~-~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~~i~~lA~ 286 (368)
T TIGR02534 213 AGVELIEQPTPA-ENREALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESKKIAAIAE 286 (368)
T ss_pred cChhheECCCCc-ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHHHHHHH
Confidence 345556222222 3367777788876666 677777888888887665 347788876654321111124889999
Q ss_pred HhCCeEEEecccccc
Q 017861 242 ELGITLIAYCPIAQG 256 (365)
Q Consensus 242 ~~gi~v~a~~~l~~G 256 (365)
.+|+.++..+.+..+
T Consensus 287 ~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 287 AAGIALYGGTMLEGP 301 (368)
T ss_pred HcCCceeeecchhhH
Confidence 999999876555444
No 134
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.83 E-value=2.6e+02 Score=24.91 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecC
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKF 135 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~ 135 (365)
.+.+++.++.+..++.|++.|+-.-...++ .+.|.+.-+..+ +--+-.-|+.
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~--------~~~I~~l~~~~p----~~~IGAGTVl 75 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAA--------LEAIRLIAKEVP----EALIGAGTVL 75 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccH--------HHHHHHHHHHCC----CCEEEEeecc
Confidence 356999999999999999999987433332 667755434443 2334455665
No 135
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.29 E-value=1.9e+02 Score=28.02 Aligned_cols=83 Identities=8% Similarity=0.020 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHcCC----cCEEeec--CCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcc----c---ccHHHH
Q 017861 173 GNEGFIDGLGDAVEQGL----VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE----E---NGVKAA 239 (365)
Q Consensus 173 ~~~~~~~~l~~l~~~G~----ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~----~---~~~~~~ 239 (365)
+.++++++++++.+.+. |+++=+. |.+.++++++.+.++.. +..++-++||++..... . ..+.+.
T Consensus 244 ~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l--~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~ 321 (356)
T PRK14455 244 PLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGI--KCHVNLIPVNPVPERDYVRTPKEDIFAFEDT 321 (356)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC--CCcEEEEecCcCCCCCCcCCCHHHHHHHHHH
Confidence 46889999999877542 2344343 45668888888876543 36778889998764221 1 136666
Q ss_pred HHHhCCeEEEeccccccc
Q 017861 240 CDELGITLIAYCPIAQGA 257 (365)
Q Consensus 240 ~~~~gi~v~a~~~l~~G~ 257 (365)
++++|+.+......|..+
T Consensus 322 L~~~gi~v~ir~~~g~di 339 (356)
T PRK14455 322 LKKNGVNCTIRREHGTDI 339 (356)
T ss_pred HHHCCCcEEEeCCCCcch
Confidence 888999999887776543
No 136
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.15 E-value=2.7e+02 Score=27.18 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHH-HcCC---cCEEeec--CCCHHHHHHHHHHHHhcC-CceeeeeeecccccCCccc-------ccHH
Q 017861 172 WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRG-IPLASNQVNYSLIYRKPEE-------NGVK 237 (365)
Q Consensus 172 ~~~~~~~~~l~~l~-~~G~---ir~iGvS--~~~~~~l~~~~~~~~~~~-~~~~~~q~~~n~~~~~~~~-------~~~~ 237 (365)
++.+++++++.++. +.|+ |.|+=+. |.+.++++++.+.++... .+..++-++||++...... ..+.
T Consensus 262 ~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~ 341 (373)
T PRK14459 262 WKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPEVEREFV 341 (373)
T ss_pred CCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcCCCHHHHHHHH
Confidence 45789999988876 4453 3355555 456777777777766431 2578899999996542221 1367
Q ss_pred HHHHHhCCeEEEecccccc
Q 017861 238 AACDELGITLIAYCPIAQG 256 (365)
Q Consensus 238 ~~~~~~gi~v~a~~~l~~G 256 (365)
+..+++||.+..+...|..
T Consensus 342 ~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 342 RRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred HHHHHCCCeEEeeCCCCcC
Confidence 7788899999998887754
No 137
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=39.13 E-value=2.8e+02 Score=24.59 Aligned_cols=120 Identities=11% Similarity=0.043 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
.++++-.+++..+++.|+.++|.=-... ++.+......... +.+++++..-.. ...+.+.+...+
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~~----------~~~~~~~~~~~~~---~~~iI~S~H~f~--~tp~~~~l~~~~ 136 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDLF----------PDDLKSRLAARKG---GTKIILSYHDFE--KTPSWEELIELL 136 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGCC----------HHHHHHHHHHHHT---TSEEEEEEEESS-----THHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccc----------hhHHHHHHHHhhC---CCeEEEEeccCC--CCCCHHHHHHHH
Confidence 4678999999999999999999844322 3332222222221 467777776311 223344455555
Q ss_pred HHHHHHhCCCceeEEEeC-CCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHH
Q 017861 152 KDSLFRLGLSSVELYQLA-GIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 207 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~-~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 207 (365)
++.. .+|.|.+=+...+ +..+...+++...++++.-.+..|+++.-..-.+-++.
T Consensus 137 ~~~~-~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~ 192 (224)
T PF01487_consen 137 EEMQ-ELGADIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRIL 192 (224)
T ss_dssp HHHH-HTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHC
T ss_pred HHHH-hcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHH
Confidence 5444 7887777766664 33345556666666666534455555544333444443
No 138
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=39.02 E-value=2.7e+02 Score=24.40 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHH--CCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 017861 72 RKMKAAKAAFDTSLD--NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~--~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (365)
+++++.+.+.-.+++ -|=.++|...--|. =.+ +|..-.+ ..+++=. +. .+...+
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGs---------i~i--E~a~~~p----~~~v~AI--------e~-~~~a~~ 72 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGS---------ITI--EWALAGP----SGRVIAI--------ER-DEEALE 72 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccH---------HHH--HHHHhCC----CceEEEE--------ec-CHHHHH
Confidence 577888877777764 58889997554432 111 2222222 1232221 11 233567
Q ss_pred HHHHHHHHhCCCceeEEEe--CC---------------CCChHHHHHHHHHH-HHcCCcCEEeecCCCHHHHHHHHHHHH
Q 017861 150 ALKDSLFRLGLSSVELYQL--AG---------------IWGNEGFIDGLGDA-VEQGLVKAVGVSNYSEKRLRNAYEKLK 211 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l--~~---------------~~~~~~~~~~l~~l-~~~G~ir~iGvS~~~~~~l~~~~~~~~ 211 (365)
.+++-++++|++.+.++-= |+ .-..++++++..+. +.-|++ =+.--..+.+..+++..+
T Consensus 73 ~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrl---V~naitlE~~~~a~~~~~ 149 (187)
T COG2242 73 LIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRL---VANAITLETLAKALEALE 149 (187)
T ss_pred HHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeE---EEEeecHHHHHHHHHHHH
Confidence 7888889999776555433 11 12356666665554 333433 333335667777777777
Q ss_pred hcCCceeeeeeeccc
Q 017861 212 KRGIPLASNQVNYSL 226 (365)
Q Consensus 212 ~~~~~~~~~q~~~n~ 226 (365)
+.|+. +++|+..+-
T Consensus 150 ~~g~~-ei~~v~is~ 163 (187)
T COG2242 150 QLGGR-EIVQVQISR 163 (187)
T ss_pred HcCCc-eEEEEEeec
Confidence 77665 777766554
No 139
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=38.82 E-value=3.4e+02 Score=25.53 Aligned_cols=173 Identities=14% Similarity=0.058 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCC---CCC--CchHHHHHHHHH---hccCCCCCCcEEEEecCCCCC------
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS---FGA--INSETLLGRFIK---ERKQRDPEVEVTVATKFAALP------ 139 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s---~~~--~~sE~~lG~al~---~~~~~~~R~~~~I~tK~~~~~------ 139 (365)
++..+++-+..+++|-+.|.|.....+... .|- ...+++.-.+++ +......+.+++|+.=+|+..
T Consensus 45 Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~~ 124 (304)
T PRK09485 45 PELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLADG 124 (304)
T ss_pred hHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCCC
Confidence 455677777788999999998876544210 011 012344444433 111000122588888888632
Q ss_pred ------CCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHc--CCcCEEeecCC------CHHHHHH
Q 017861 140 ------WRLGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNY------SEKRLRN 205 (365)
Q Consensus 140 ------~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~--G~ir~iGvS~~------~~~~l~~ 205 (365)
+..+.+.+++......+.|--..+|++++--.....|...+++-+++. ++--.+.++-. +...++.
T Consensus 125 ~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~ 204 (304)
T PRK09485 125 SEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAE 204 (304)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHH
Confidence 124678888888888888865679999994444577777777777755 55444555432 1133555
Q ss_pred HHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHh-CCeEEEe
Q 017861 206 AYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDEL-GITLIAY 250 (365)
Q Consensus 206 ~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~-gi~v~a~ 250 (365)
+++.+... ..++++-++.. .+..-. .+++...+. +..+++|
T Consensus 205 ~~~~l~~~-~~~~~iGiNC~--~p~~~~-~~l~~~~~~~~~pl~~~ 246 (304)
T PRK09485 205 AAALLAAS-PQVVAVGVNCT--APELVT-AAIAALRAVTDKPLVVY 246 (304)
T ss_pred HHHHHhcC-CCceEEEecCC--CHHHHH-HHHHHHHhccCCcEEEE
Confidence 55554321 13666666664 332211 244444332 4555555
No 140
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=38.77 E-value=3.5e+02 Score=25.62 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=74.1
Q ss_pred chhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 017861 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (365)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (365)
..++.++..++++.+.+.|+..|.- .| |+..=.+.-.+++.. +++... -.++.|+|-. .-. .+
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~l---tG-GEPll~~~l~~li~~-i~~~~g---i~~v~itTNG----~ll-~~---- 103 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRL---TG-GEPLLRKDLVELVAR-LAALPG---IEDIALTTNG----LLL-AR---- 103 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEE---EC-ccccccCCHHHHHHH-HHhcCC---CCeEEEEeCc----hhH-HH----
Confidence 3467899999999999999987753 23 321111111233333 333211 1367788854 111 11
Q ss_pred HHHHHHHHhCCCceeEEEeCC------------CCChHHHHHHHHHHHHcCCc--C--EEeecCCCHHHHHHHHHHHHhc
Q 017861 150 ALKDSLFRLGLSSVELYQLAG------------IWGNEGFIDGLGDAVEQGLV--K--AVGVSNYSEKRLRNAYEKLKKR 213 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l~~------------~~~~~~~~~~l~~l~~~G~i--r--~iGvS~~~~~~l~~~~~~~~~~ 213 (365)
.-+.|.+.|.+++-+ -++. ....+.++++++.+++.|.- + .+-+.+.+.+++..+++.+...
T Consensus 104 -~~~~L~~~gl~~v~I-Sld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~ 181 (334)
T TIGR02666 104 -HAKDLKEAGLKRVNV-SLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKER 181 (334)
T ss_pred -HHHHHHHcCCCeEEE-ecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 224466667654331 1211 01367889999999998853 2 2333456778888888888776
Q ss_pred CCceee
Q 017861 214 GIPLAS 219 (365)
Q Consensus 214 ~~~~~~ 219 (365)
++.+.+
T Consensus 182 gv~~~~ 187 (334)
T TIGR02666 182 GVTLRF 187 (334)
T ss_pred CCeEEE
Confidence 654443
No 141
>PRK00077 eno enolase; Provisional
Probab=38.73 E-value=2.2e+02 Score=28.30 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcC--CcCEEeecC--CCHHHHHHHHHHHHhcCCcee
Q 017861 143 GRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQG--LVKAVGVSN--YSEKRLRNAYEKLKKRGIPLA 218 (365)
Q Consensus 143 ~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~~~~~ 218 (365)
+++....-+.+.++.+ +++++-++.+ ++-|+.+.+|.+.- +|.-.|=-. .+++.+.++++. --.+
T Consensus 262 s~~e~~~~~~~l~e~y-----~i~~iEdPl~-~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~-----~a~d 330 (425)
T PRK00077 262 TSEEMIDYLAELVDKY-----PIVSIEDGLD-ENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEK-----GAAN 330 (425)
T ss_pred CHHHHHHHHHHHHhhC-----CcEEEEcCCC-CccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHh-----CCCC
Confidence 5555555555555554 5667733332 23467777777663 555444332 357888888765 3477
Q ss_pred eeeeecccccCCcccccHHHHHHHhCCeEEEe
Q 017861 219 SNQVNYSLIYRKPEENGVKAACDELGITLIAY 250 (365)
Q Consensus 219 ~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~ 250 (365)
++|+..|-+-.=.+..++...|+++|+.++..
T Consensus 331 ~v~ik~~~~GGitea~~ia~lA~~~gi~~~vs 362 (425)
T PRK00077 331 SILIKVNQIGTLTETLDAIELAKRAGYTAVVS 362 (425)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHcCCeEEEe
Confidence 78877664332112235899999999987653
No 142
>PLN00191 enolase
Probab=38.48 E-value=2.2e+02 Score=28.60 Aligned_cols=98 Identities=10% Similarity=0.064 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeec--CCCHHHHHHHHHHHHhcCCceeee
Q 017861 143 GRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASN 220 (365)
Q Consensus 143 ~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~ 220 (365)
+++.+.+-+++.+++ .++.++-++. .++-|+.+.+|.+..+|.-+|=- ..+++.+.++++. .-.+++
T Consensus 296 s~~e~i~~~~~L~~~-----y~I~~IEDPl-~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~-----~aad~i 364 (457)
T PLN00191 296 SGDELIDLYKEFVSD-----YPIVSIEDPF-DQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQE-----KACNAL 364 (457)
T ss_pred CHHHHHHHHHHHhhc-----CCcEEEECCC-CcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHh-----CCCCEE
Confidence 455444444444433 3566673332 23457888888888888766611 2457888888765 346777
Q ss_pred eeecccccCCcccccHHHHHHHhCCeEEEec
Q 017861 221 QVNYSLIYRKPEENGVKAACDELGITLIAYC 251 (365)
Q Consensus 221 q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~ 251 (365)
++..|-+-.=.+..++.+.|+++|+.++..+
T Consensus 365 ~iKl~qiGGITea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 365 LLKVNQIGTVTESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred EecccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 7776643322222358999999999998744
No 143
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.36 E-value=4.1e+02 Score=26.35 Aligned_cols=56 Identities=13% Similarity=-0.016 Sum_probs=29.0
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-CceeEEEe
Q 017861 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQL 168 (365)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~-d~iDl~~l 168 (365)
|+-|-++|++...+.+.+=++|.|-+-. ..-.+.+..-+++.-++... ..+.++.+
T Consensus 70 ~~~L~~ai~~~~~~~~p~~I~v~ttC~~---~iiGdDi~~v~~~~~~~~~~~~~~~vi~v 126 (435)
T cd01974 70 QNNLIDGLKNAYAVYKPDMIAVSTTCMA---EVIGDDLNAFIKNAKNKGSIPADFPVPFA 126 (435)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCchH---hhhhccHHHHHHHHHHhccCCCCCeEEEe
Confidence 7788888877554332455677776632 22233333333333223211 13677777
No 144
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=38.22 E-value=2.2e+02 Score=28.25 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcC--CcCEEeecC--CCHHHHHHHHHHHHhcCCcee
Q 017861 143 GRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQG--LVKAVGVSN--YSEKRLRNAYEKLKKRGIPLA 218 (365)
Q Consensus 143 ~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~~~~~ 218 (365)
+++...+-+++.++. .++.++-++.+ ++-|+.+.+|.+.- .|.-.|=-. .+++.++++++. --.+
T Consensus 263 s~~eai~~~~~lle~-----~~i~~iEdPl~-~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~-----~a~d 331 (425)
T TIGR01060 263 TSEEMIEYYKELVEK-----YPIVSIEDGLS-EEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEM-----GVAN 331 (425)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEEEcCCC-cccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHh-----CCCC
Confidence 344444444444433 35667733332 33477777776664 555434222 257888888765 3477
Q ss_pred eeeeecccccCCcccccHHHHHHHhCCeEEEec
Q 017861 219 SNQVNYSLIYRKPEENGVKAACDELGITLIAYC 251 (365)
Q Consensus 219 ~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~ 251 (365)
++|+..|-+-.=.+..++...|+++|+.++..+
T Consensus 332 ~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h 364 (425)
T TIGR01060 332 SILIKPNQIGTLTETLDAVELAKKAGYTAVISH 364 (425)
T ss_pred EEEecccccCCHHHHHHHHHHHHHcCCcEEEec
Confidence 777776643321122358899999999866533
No 145
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=38.15 E-value=2.5e+02 Score=24.98 Aligned_cols=121 Identities=13% Similarity=0.134 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHC-----CCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHH
Q 017861 72 RKMKAAKAAFDTSLDN-----GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~-----Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~ 146 (365)
+++++..+.++.+++. |+|---.+....+ +..+...++.... |.-+||=++... .
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~---------~~~m~~vl~~l~~---~gl~FvDS~T~~----~---- 130 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSD---------REAMRWVLEVLKE---RGLFFVDSRTTP----R---- 130 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC----------HHHHHHHHHHHHH---TT-EEEE-S--T----T----
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCC---------HHHHHHHHHHHHH---cCCEEEeCCCCc----c----
Confidence 5689999999999986 5553333333333 6677666665542 467777566632 1
Q ss_pred HHHHHHHHHHHhCCCc--eeEEEeCCCCChHHHH----HHHHHHHHcCCcCEEeecCC-CHHHHHHHHHHHHhcCC
Q 017861 147 VLAALKDSLFRLGLSS--VELYQLAGIWGNEGFI----DGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGI 215 (365)
Q Consensus 147 i~~~l~~SL~~Lg~d~--iDl~~l~~~~~~~~~~----~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~ 215 (365)
....+.-+++|+-+ -|+ +|++..+.+.+. ++....+++|.+-.||=..- +.+.|++.....+..|+
T Consensus 131 --s~a~~~A~~~gvp~~~rdv-fLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p~Tl~~L~~~~~~l~~~gi 203 (213)
T PF04748_consen 131 --SVAPQVAKELGVPAARRDV-FLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPRPETLEALEEWLPELEAQGI 203 (213)
T ss_dssp ---SHHHHHHHCT--EEE-SE-ETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHHHHHHCTE
T ss_pred --cHHHHHHHHcCCCEEeece-ecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCCHHHHHHHHHHHhHHhhCCE
Confidence 11233445566543 233 232223333333 33334566786666663332 33444454444444443
No 146
>PRK15063 isocitrate lyase; Provisional
Probab=38.03 E-value=1.5e+02 Score=29.44 Aligned_cols=134 Identities=13% Similarity=0.036 Sum_probs=67.8
Q ss_pred cccceecccccCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCC---eeecccc-cCCCCCCCCC--chHHHHHHHHHhcc
Q 017861 48 VTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT---FFDTAEV-YGSRASFGAI--NSETLLGRFIKERK 121 (365)
Q Consensus 48 vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin---~~DTA~~-Yg~g~s~~~~--~sE~~lG~al~~~~ 121 (365)
+|.+.=+=.++|+. ..+.++++..++.|+- +=|-... =-.|+-.|.. ..|+.+.+.-.-+.
T Consensus 147 ~PIiADaDtGfGg~-------------~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~ 213 (428)
T PRK15063 147 APIVADAEAGFGGV-------------LNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARL 213 (428)
T ss_pred CCeEEECCCCCCCc-------------HHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHH
Confidence 66665444555554 4578889999988764 4454221 0012222221 34555555322111
Q ss_pred CC-CCCCcEEEEecCCCCC----------CC-------CC-------HHHHHHHHHHHHHHhCCCceeEEEeCC-CCChH
Q 017861 122 QR-DPEVEVTVATKFAALP----------WR-------LG-------RQSVLAALKDSLFRLGLSSVELYQLAG-IWGNE 175 (365)
Q Consensus 122 ~~-~~R~~~~I~tK~~~~~----------~~-------~~-------~~~i~~~l~~SL~~Lg~d~iDl~~l~~-~~~~~ 175 (365)
.+ ....+++|....-... .+ .+ ...+..+|++.+.-.. +-|+++++. ..+.+
T Consensus 214 A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~--GAD~iw~Et~~~d~e 291 (428)
T PRK15063 214 AADVMGVPTLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP--YADLIWCETSTPDLE 291 (428)
T ss_pred HHHhcCCCeEEEEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc--CCCEEEeCCCCCCHH
Confidence 00 0012477776653310 00 01 1347788888886654 999999964 43455
Q ss_pred HHHHHHHHHHH--cCCcCEEeec
Q 017861 176 GFIDGLGDAVE--QGLVKAVGVS 196 (365)
Q Consensus 176 ~~~~~l~~l~~--~G~ir~iGvS 196 (365)
++-+..+.+.. =+++..+|.|
T Consensus 292 e~~~fa~~v~~~~P~~~layn~s 314 (428)
T PRK15063 292 EARRFAEAIHAKFPGKLLAYNCS 314 (428)
T ss_pred HHHHHHHhhcccCccceeecCCC
Confidence 55444444443 3445555544
No 147
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=37.80 E-value=2.9e+02 Score=24.50 Aligned_cols=108 Identities=12% Similarity=0.087 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
.++++-.++++.+++.|..++|.=-.. .. -.+.+..+ ++ . +.+++++-.-.. ...+.+.+...+
T Consensus 73 ~~~~~~~~ll~~~~~~~~d~vDiEl~~--~~------~~~~~~~~-~~-~----~~kiI~S~H~f~--~tp~~~~l~~~~ 136 (225)
T cd00502 73 GSEEEYLELLEEALKLGPDYVDIELDS--AL------LEELINSR-KK-G----NTKIIGSYHDFS--GTPSDEELVSRL 136 (225)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecc--hH------HHHHHHHH-Hh-C----CCEEEEEeccCC--CCcCHHHHHHHH
Confidence 345778899999999999999962111 00 02222221 11 1 356666655411 112345566555
Q ss_pred HHHHHHhCCCceeEEEeC-CCCChHHHHHHHHHHHHcCCcCEEeec
Q 017861 152 KDSLFRLGLSSVELYQLA-GIWGNEGFIDGLGDAVEQGLVKAVGVS 196 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~-~~~~~~~~~~~l~~l~~~G~ir~iGvS 196 (365)
++ ...+|.|.+=+...+ +..+...++....+++....+..|+++
T Consensus 137 ~~-~~~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~ 181 (225)
T cd00502 137 EK-MAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIPLIAIN 181 (225)
T ss_pred HH-HHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 54 556676666666664 223344555555555544333444444
No 148
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=37.78 E-value=3.2e+02 Score=25.01 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEe---CCC--CChH----HHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHh
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQL---AGI--WGNE----GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 212 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l---~~~--~~~~----~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 212 (365)
.+++.+.+..++.+ .-|.|+||+=.. |+. .+.+ .+...++.+++.-.+ -+.+-+++++.++++++.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~--- 94 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEA--- 94 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHc---
Confidence 45666666665554 568999999533 322 1222 356666667666233 389999999999999875
Q ss_pred cCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecc
Q 017861 213 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 252 (365)
Q Consensus 213 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~ 252 (365)
|.. -++-+. ... . .++++.++++|..++.+.-
T Consensus 95 -G~~-iINsis--~~~--~--~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 95 -GAD-IINDVS--GGQ--D--PAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred -CCC-EEEECC--CCC--C--chhHHHHHHcCCcEEEEeC
Confidence 322 233222 221 1 1489999999999998643
No 149
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.65 E-value=3.2e+02 Score=24.98 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=65.4
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcC--------C-cCEEeec
Q 017861 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQG--------L-VKAVGVS 196 (365)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G--------~-ir~iGvS 196 (365)
|++..=.++.+.++.....+.++.-+++|++.|.- .+-...+|+.|++.- + |+.+|+.
T Consensus 25 rG~~~k~~dt~iD~~~v~~~~fq~klensr~kle~-------------S~Fl~~~lEqLq~~l~~~~~piek~~vclglG 91 (281)
T KOG3131|consen 25 RGRHKKESDTLIDCPDVNVEKFQPKLENSRTKLEQ-------------SDFLLVALEQLQQQLEGIRKPIEKIIVCLGLG 91 (281)
T ss_pred cCCCccccccccCcccccHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhHHHhhhccchhheEEEEeec
Confidence 44444466666555667788899999999999852 222333444444322 4 4889998
Q ss_pred CCCH-----HHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEeccccc
Q 017861 197 NYSE-----KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 255 (365)
Q Consensus 197 ~~~~-----~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~ 255 (365)
++.. .|+.-+++..+...+.. ++-.-|.++.+. +=.++.+..|--|+.-.+.+.
T Consensus 92 ~f~~~~~a~~Qlal~iei~r~fk~~~-~~~s~fDPvf~k----~E~eyLeslG~cvLs~~e~~~ 150 (281)
T KOG3131|consen 92 PFSRTYHALHQLALVIEIHRHFKIRD-VEASYFDPVFRK----SEKEYLESLGGCVLSKDEAGK 150 (281)
T ss_pred cccccccHHHHHHHHHHHHHHhcccc-ceeeeeCcchhh----hHHHHHHhcCCeEeccCcccc
Confidence 8742 45555555544333322 222233343332 247888888888877666554
No 150
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=37.24 E-value=1.6e+02 Score=26.16 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=51.8
Q ss_pred Ccccccceeccccc----CCCCC--------CCCCCCchhHHHHHHHHHHHHHHCCCCeee-cccccCCCCCCCCCchHH
Q 017861 45 DLKVTKLGVGAWSW----GDTSY--------WNNFQWDDRKMKAAKAAFDTSLDNGITFFD-TAEVYGSRASFGAINSET 111 (365)
Q Consensus 45 g~~vs~lglGt~~~----g~~~~--------~~~~~~~~~~~~~~~~~l~~A~~~Gin~~D-TA~~Yg~g~s~~~~~sE~ 111 (365)
|+.+|.+-+|-+.- |...+ -+.+-..+++.|++..+-++|.++|+.++- +|+.--+ |+
T Consensus 93 gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtd---------eR 163 (268)
T KOG4175|consen 93 GVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTD---------ER 163 (268)
T ss_pred CcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChH---------HH
Confidence 67888888877641 10000 000112345667777777777777777664 4444443 43
Q ss_pred HHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC
Q 017861 112 LLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG 159 (365)
Q Consensus 112 ~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg 159 (365)
+ +.|.+.. -.=+++++..|. ..+.+.+-..+...|+|.+
T Consensus 164 m--ell~~~a----dsFiYvVSrmG~---TG~~~svn~~l~~L~qrvr 202 (268)
T KOG4175|consen 164 M--ELLVEAA----DSFIYVVSRMGV---TGTRESVNEKLQSLLQRVR 202 (268)
T ss_pred H--HHHHHhh----cceEEEEEeccc---cccHHHHHHHHHHHHHHHH
Confidence 3 3344332 134567777663 3455556666666666654
No 151
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=37.16 E-value=1.2e+02 Score=29.79 Aligned_cols=85 Identities=9% Similarity=-0.076 Sum_probs=55.1
Q ss_pred eeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHH
Q 017861 163 VELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACD 241 (365)
Q Consensus 163 iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~ 241 (365)
.++.++-++.+ .+-++.+.+|++.-.|. ..|=|-++.+.++++++. .-++++|+...-.--=.....+.+.|+
T Consensus 232 ~~l~~iEeP~~-~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~kia~lA~ 305 (404)
T PRK15072 232 YRLFWLEDPTP-AENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRRIADFAA 305 (404)
T ss_pred cCCcEEECCCC-ccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHHHHHHHH
Confidence 35555522221 23367788888886666 667777888898888765 347888876554321111124889999
Q ss_pred HhCCeEEEeccc
Q 017861 242 ELGITLIAYCPI 253 (365)
Q Consensus 242 ~~gi~v~a~~~l 253 (365)
.+|+.++.++..
T Consensus 306 ~~gi~~~~h~~~ 317 (404)
T PRK15072 306 LYQVRTGSHGPT 317 (404)
T ss_pred HcCCceeeccCc
Confidence 999999986543
No 152
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=36.82 E-value=3.1e+02 Score=24.54 Aligned_cols=173 Identities=8% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 017861 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (365)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (365)
......+++..|.+.|+..|=.+++...... .....+.+++. +|+...-+ ...+.+.+..-++
T Consensus 14 ~~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~------~~~~~~~~~~i-------~Il~GiEi----~~~~~~~~~~~~~ 76 (237)
T PRK00912 14 GYDTVLRLISEASHLGYSGIALSNHSDKYPE------SKPELEDLLGF-------EIFRGVEI----VASNPSKLRGLVG 76 (237)
T ss_pred CcchHHHHHHHHHHCCCCEEEEecCcccccc------hhHHHHHhcCC-------cEEeeEEE----ecCCHHHHHHHHH
Q ss_pred HHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCC---CHHHHHHHHHHHHhcCCceeeeeeecccccC
Q 017861 153 DSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 229 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 229 (365)
+.++++ |++.+|..+. +....+.+.+.|.-||--.. ....-+.+++.+...+ .++.+.++.+-.
T Consensus 77 ~~~~~~-----d~v~v~~~~~-----~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g---v~lEIn~s~~~~ 143 (237)
T PRK00912 77 KFRKKV-----DVLAVHGGDE-----KVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN---VAIEFNLRDILK 143 (237)
T ss_pred hccCcc-----cEEEEeCCCH-----HHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC---eEEEEEchHhhh
Q ss_pred Cccc---------ccHHHHHHHhCCeEE----EecccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHH
Q 017861 230 KPEE---------NGVKAACDELGITLI----AYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGE 296 (365)
Q Consensus 230 ~~~~---------~~~~~~~~~~gi~v~----a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~ 296 (365)
.... ..++..|++.|+.++ |+.|..-+-+. ....+++
T Consensus 144 ~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~~~l~~~~------------------------------~~~~l~~ 193 (237)
T PRK00912 144 SRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSCYDLRSPR------------------------------EMIALAE 193 (237)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcccccCCHH------------------------------HHHHHHH
Q ss_pred HcCCCHHHH
Q 017861 297 NYSKTSTQV 305 (365)
Q Consensus 297 ~~~~s~~ql 305 (365)
..|.+..++
T Consensus 194 ~~Gl~~~~~ 202 (237)
T PRK00912 194 LFGMEEDEA 202 (237)
T ss_pred HcCCCHHHH
No 153
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=36.75 E-value=1.8e+02 Score=24.27 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=38.6
Q ss_pred EEeecCCC--HHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEeccccccc
Q 017861 192 AVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 257 (365)
Q Consensus 192 ~iGvS~~~--~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~ 257 (365)
-+|...|+ ...+..+... .-|++ .|..+.+.++ +++..+.++++.++..|.+.++.
T Consensus 19 k~GlDgHd~gakvia~~l~d-----~GfeV---i~~g~~~tp~--e~v~aA~~~dv~vIgvSsl~g~h 76 (143)
T COG2185 19 KLGLDGHDRGAKVIARALAD-----AGFEV---INLGLFQTPE--EAVRAAVEEDVDVIGVSSLDGGH 76 (143)
T ss_pred ccCccccccchHHHHHHHHh-----CCceE---EecCCcCCHH--HHHHHHHhcCCCEEEEEeccchH
Confidence 46777774 3455555443 23555 3444566665 58999999999999999999873
No 154
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=36.56 E-value=3.9e+02 Score=25.53 Aligned_cols=150 Identities=13% Similarity=0.058 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~S 154 (365)
++..+.+..+.+.|++.|=.-- +.... .+.| +++++.. .++-|.-=.. ..++.+..+ +
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d------~~~l-~~vr~~~-----g~~~l~lDaN---~~~~~~~a~--~--- 196 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWD------VEPL-KAVRERF-----PDIPLMADAN---SAYTLADIP--L--- 196 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHH------HHHH-HHHHHHC-----CCCeEEEECC---CCCCHHHHH--H---
Confidence 4566777778899998773311 11111 2333 3444432 1333333331 234455432 2
Q ss_pred HHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCccc
Q 017861 155 LFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE 233 (365)
Q Consensus 155 L~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~ 233 (365)
+++| +..++.++-++.+. +-++.+.++++.-.+. ..|=|-++.+.+..+++. .-++++|+..+.+---...
T Consensus 197 ~~~l--~~~~i~~iEeP~~~-~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~~~ik~~~~GGit~~ 268 (354)
T cd03317 197 LKRL--DEYGLLMIEQPLAA-DDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL-----GACKIINIKPGRVGGLTEA 268 (354)
T ss_pred HHHh--hcCCccEEECCCCh-hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc-----CCCCEEEecccccCCHHHH
Confidence 3444 22456667333322 3366777777664433 567777888888888765 2478888876543211111
Q ss_pred ccHHHHHHHhCCeEEEecccc
Q 017861 234 NGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 234 ~~~~~~~~~~gi~v~a~~~l~ 254 (365)
..+...|+.+|+.++..+...
T Consensus 269 ~~i~~~A~~~gi~~~~g~~~e 289 (354)
T cd03317 269 LKIHDLCQEHGIPVWCGGMLE 289 (354)
T ss_pred HHHHHHHHHcCCcEEecCccc
Confidence 248999999999998755443
No 155
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=36.38 E-value=36 Score=26.46 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=33.9
Q ss_pred cCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccc
Q 017861 196 SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 196 S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
+.++.+.+.++++. --++++|+...-.--=.+...+.+.|+++|+.++..+. ..+
T Consensus 3 ~~~~~~~~~~li~~-----~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA-----GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHT-----TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHc-----CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 45667777777664 34677777654321111112488899999999998886 443
No 156
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=36.35 E-value=1.8e+02 Score=27.42 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEeccccccc
Q 017861 179 DGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 257 (365)
Q Consensus 179 ~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~ 257 (365)
+.+..+.+.-.+. ..|=|-++.+.+.++++. .-.+++|+.....---.....+.+.|+.+|+.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~-----~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGP-----GWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhc-----CCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 4555555553333 445555666666666543 2356666655532211111258999999999999887776553
No 157
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=36.34 E-value=3.4e+02 Score=24.76 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=61.6
Q ss_pred HHHHHHcCCcCEEee--cCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccccc
Q 017861 181 LGDAVEQGLVKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 258 (365)
Q Consensus 181 l~~l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L 258 (365)
|.+..++|+. .+|+ ...++..++.+. ..|..+.++-++.++++..... .++..++..|+.++++-|-..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~----~~g~D~v~iDlEH~~~~~~~~~-~~~~a~~~~g~~~~VRv~~~~--- 73 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICA----GAGFDWLLIDGEHAPNDVRTIL-SQLQALAPYPSSPVVRPAIGD--- 73 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHH----hcCCCEEEEeccCCCCCHHHHH-HHHHHHHhcCCCcEEECCCCC---
Confidence 3445566775 3554 333444444433 3346677777788887644333 366777777888887754331
Q ss_pred cCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-EEeecCCCHHHHHHHHhhhCC
Q 017861 259 TGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGW 337 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v-~~i~g~~~~~~l~en~~a~~~ 337 (365)
+ .-++.++..+.- +++|-..+++++++.+++...
T Consensus 74 -------------------------------------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -------------------------------------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -------------------------------------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 134556665533 677888888888888887754
No 158
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=36.31 E-value=3.4e+02 Score=24.86 Aligned_cols=68 Identities=7% Similarity=-0.039 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEeCCC----CChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHH
Q 017861 141 RLGRQSVLAALKDSLFRLGLSSVELYQLAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 209 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~----~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 209 (365)
.++.+...+-.+-..+-+++++|=|=.++|. .+..+++++.++|+++|.+- +=+++-++...+++.+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~ 143 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA 143 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc
Confidence 5678877778888888889999988888653 35889999999999999765 44667676666666554
No 159
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=36.11 E-value=3.4e+02 Score=26.02 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEE
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELY 166 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~ 166 (365)
++.+.+.+ +-+.|.+.|+++|.+-
T Consensus 22 f~~~~~~~-i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRA-IARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEee
Confidence 44443333 3333666666666654
No 160
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.97 E-value=86 Score=24.50 Aligned_cols=73 Identities=25% Similarity=0.162 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC-CC------------
Q 017861 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA-LP------------ 139 (365)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~-~~------------ 139 (365)
|..-..+..--++++|.-|+-|-..|--|+ |.++---|-+. .+++++++|+.. .|
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG~-------evfl~l~lld~-----pekl~vagkVaWitP~gt~sr~~GiGv 85 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIGE-------EVFLLLELLDF-----PEKLPVAGKVAWITPVGTQSRPAGIGV 85 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccch-------hhhhhhhhcCc-----hhhccccceEEEEccCCCCCCCCceee
Confidence 345556666677899999999999998773 55544334444 378889998732 11
Q ss_pred ---CCCCHHHHHHHHHHHHHH
Q 017861 140 ---WRLGRQSVLAALKDSLFR 157 (365)
Q Consensus 140 ---~~~~~~~i~~~l~~SL~~ 157 (365)
.+-.-..+++.+|.-|-.
T Consensus 86 ~f~d~e~g~~vr~~IE~~Lg~ 106 (117)
T COG3215 86 QFTDGENGLKVRNQIETLLGG 106 (117)
T ss_pred eccCCCchhhHHHHHHHHHHh
Confidence 111234688888877754
No 161
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=35.95 E-value=2.7e+02 Score=26.85 Aligned_cols=43 Identities=26% Similarity=0.337 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcC-CcCEEeec---------CCCHHHHHHHHHHHHhcCCcee
Q 017861 176 GFIDGLGDAVEQG-LVKAVGVS---------NYSEKRLRNAYEKLKKRGIPLA 218 (365)
Q Consensus 176 ~~~~~l~~l~~~G-~ir~iGvS---------~~~~~~l~~~~~~~~~~~~~~~ 218 (365)
+.++.|..+.+.| -.-++|.. ||+.++++++++.+...|.++-
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~ 66 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVY 66 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEE
Confidence 4556666666666 33355544 5666777777777776665443
No 162
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.51 E-value=2.7e+02 Score=27.62 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=70.6
Q ss_pred HHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh
Q 017861 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL 158 (365)
Q Consensus 79 ~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~L 158 (365)
.+|.++++.|-- -..-.||+... . -.-|.+.|.+.-. ..+.-.+-+ ..+.+.+++.++++.+++
T Consensus 37 ~~lrr~v~~~~l--~SmIl~GPPG~---G--KTTlA~liA~~~~----~~f~~~sAv-----~~gvkdlr~i~e~a~~~~ 100 (436)
T COG2256 37 KPLRRAVEAGHL--HSMILWGPPGT---G--KTTLARLIAGTTN----AAFEALSAV-----TSGVKDLREIIEEARKNR 100 (436)
T ss_pred chHHHHHhcCCC--ceeEEECCCCC---C--HHHHHHHHHHhhC----CceEEeccc-----cccHHHHHHHHHHHHHHH
Confidence 478888887632 22237886422 1 7788888877541 233322222 356788999999998888
Q ss_pred CCCceeEEEeCCCCC-hHHHHHHHHHHHHcCCcCEEeecCCCH
Q 017861 159 GLSSVELYQLAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSE 200 (365)
Q Consensus 159 g~d~iDl~~l~~~~~-~~~~~~~l~~l~~~G~ir~iGvS~~~~ 200 (365)
+...=-++++..... +...-++|.-.++.|.|..||-++-+|
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 865556777732211 445567788889999999999987654
No 163
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=35.48 E-value=3.8e+02 Score=25.98 Aligned_cols=159 Identities=14% Similarity=0.160 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC---CCCCCHHHHHH
Q 017861 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL---PWRLGRQSVLA 149 (365)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~---~~~~~~~~i~~ 149 (365)
+.++..+.|+.|.+.|++.+=|+=+...........--..|.++.++ ..+-|..=+.+. ....+.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~-------~~~~v~~Disp~~l~~lg~~~~dl-- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKE-------LGMEVIADISPKVLKKLGISYDDL-- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHH-------CT-EEEEEE-CCHHHTTT-BTTBT--
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHH-------CCCEEEEECCHHHHHHcCCCHHHH--
Confidence 46888999999999999999998777653220000000233333443 345555555331 011122211
Q ss_pred HHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccC
Q 017861 150 ALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 229 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 229 (365)
..|+.||++ .+=|......++ +.+|-+.|.--.+=.|+.+.+.++.+++.. ..++-+..-.|. .|
T Consensus 83 ---~~~~~lGi~---~lRlD~Gf~~~~----ia~ls~ng~~I~LNASti~~~~l~~L~~~~----~~~~~i~a~HNf-YP 147 (357)
T PF05913_consen 83 ---SFFKELGID---GLRLDYGFSGEE----IAKLSKNGIKIELNASTITEEELDELIKYG----ANFSNIIACHNF-YP 147 (357)
T ss_dssp ---HHHHHHT-S---EEEESSS-SCHH----HHHHTTT-SEEEEETTT--CCHHHHHCCTT------GGGEEEE----B-
T ss_pred ---HHHHHcCCC---EEEECCCCCHHH----HHHHHhCCCEEEEECCCCChHHHHHHHHhc----CCHHHeEEEecc-cC
Confidence 135666644 233332233333 334444476666777887777887775542 223333333343 33
Q ss_pred Ccccc-------cHHHHHHHhCCeEEEeccccc
Q 017861 230 KPEEN-------GVKAACDELGITLIAYCPIAQ 255 (365)
Q Consensus 230 ~~~~~-------~~~~~~~~~gi~v~a~~~l~~ 255 (365)
.++.. +.=.+.++.|+.+.|+-|-..
T Consensus 148 r~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~ 180 (357)
T PF05913_consen 148 RPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDE 180 (357)
T ss_dssp STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 33321 234456788999999987763
No 164
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=35.41 E-value=3.9e+02 Score=25.64 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=12.3
Q ss_pred cHHHHHHHhCCeEEE
Q 017861 235 GVKAACDELGITLIA 249 (365)
Q Consensus 235 ~~~~~~~~~gi~v~a 249 (365)
.+++.+++++|.+-.
T Consensus 237 ~ll~~l~~~~I~lEv 251 (345)
T cd01321 237 LLMDLVKKKNIAIEV 251 (345)
T ss_pred HHHHHHHHcCCeEEE
Confidence 489999999998754
No 165
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=35.35 E-value=3.5e+02 Score=24.69 Aligned_cols=72 Identities=25% Similarity=0.254 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCcee
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 218 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 218 (365)
...+.+.+++.++++| |.++++. +...+.+...+.++.+..+| +..|-++......+...++.+...++|+.
T Consensus 13 ~~~~~~gi~~~a~~~g--~~~~i~~~~~~~d~~~q~~~i~~l~~~~-vdgiIi~~~~~~~~~~~l~~~~~~giPvV 85 (302)
T TIGR02637 13 FEAANKGAEEAAKELG--SVYIIYTGPTGTTAEGQIEVVNSLIAQK-VDAIAISANDPDALVPALKKAMKRGIKVV 85 (302)
T ss_pred HHHHHHHHHHHHHHhC--CeeEEEECCCCCCHHHHHHHHHHHHHcC-CCEEEEeCCChHHHHHHHHHHHHCCCEEE
Confidence 5668888999999987 3445544 33345566667788877754 78888877666665555555666666643
No 166
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=35.31 E-value=4.3e+02 Score=25.69 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
++.++..++++.+.+.|++.|-- .| |+..-.++-.+++ +.+++.+. -..+.|+|-. .-. .+ .+
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~---tG-GEPllr~dl~eli-~~l~~~~g---i~~i~itTNG----~lL-~~----~~ 152 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRL---TG-GEPTLRKDIEDIC-LQLSSLKG---LKTLAMTTNG----ITL-SR----KL 152 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---EC-CCCcchhhHHHHH-HHHHhcCC---CceEEEeeCc----chH-HH----HH
Confidence 67789999999888999987753 33 3211011111222 12233211 1246666654 111 12 22
Q ss_pred HHHHHHhCCCceeEEEeCCC-----------CChHHHHHHHHHHHHcCCc--C--EEeecCCCHHHHHHHHHHHHhcCCc
Q 017861 152 KDSLFRLGLSSVELYQLAGI-----------WGNEGFIDGLGDAVEQGLV--K--AVGVSNYSEKRLRNAYEKLKKRGIP 216 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~~~-----------~~~~~~~~~l~~l~~~G~i--r--~iGvS~~~~~~l~~~~~~~~~~~~~ 216 (365)
..|...|++.+-+ -|+.. ...+.+++.++.+++.|+. + .+-+..++.+++..+++.++..++
T Consensus 153 -~~L~~aGld~VnI-SLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi- 229 (373)
T PLN02951 153 -PRLKEAGLTSLNI-SLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPI- 229 (373)
T ss_pred -HHHHhCCCCeEEE-eeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCC-
Confidence 2345556544321 11111 1257788889999888852 2 223345677788888887776553
Q ss_pred eeeeeeeccccc
Q 017861 217 LASNQVNYSLIY 228 (365)
Q Consensus 217 ~~~~q~~~n~~~ 228 (365)
.+.-++|.++.
T Consensus 230 -~vr~ie~mP~~ 240 (373)
T PLN02951 230 -NVRFIEFMPFD 240 (373)
T ss_pred -eEEEEEcccCC
Confidence 33334444443
No 167
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=35.30 E-value=70 Score=32.79 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccc
Q 017861 201 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
..|++.++.+++.++|+.+.-+.|.. |.+.+...+.++|+++|+.++....++.|
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~-DTe~Ei~~I~~~c~e~Gv~va~~~~~~~G 413 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVT-DTDAEIAALKELCEELGVEVALSEVWAKG 413 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCC-CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 55778888888888887766555543 43333345889999999999877677666
No 168
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=35.24 E-value=3.6e+02 Score=24.83 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHH--HHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSET--LLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~--~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
.+...+.++.--+.|..+|..++.=+.... +. .++..|++... -+. |.-... .+.++..++..+
T Consensus 14 ~~~l~~~~~~l~~~~pd~isvT~~~~~~~~------~~t~~~a~~l~~~~g----~~~-i~Hlt~---r~~n~~~l~~~L 79 (272)
T TIGR00676 14 EENLWETVDRLSPLDPDFVSVTYGAGGSTR------DRTVRIVRRIKKETG----IPT-VPHLTC---IGATREEIREIL 79 (272)
T ss_pred HHHHHHHHHHHhcCCCCEEEeccCCCCCcH------HHHHHHHHHHHHhcC----CCe-eEEeee---cCCCHHHHHHHH
Confidence 356666677767889999998664442211 32 33344443210 111 111111 346777787777
Q ss_pred HHHHHHhCCCceeEEEe---CC-----C--CChHHHHHHHHHHHHc-CCcCEEeecCCCH---------HHHHHHHHHHH
Q 017861 152 KDSLFRLGLSSVELYQL---AG-----I--WGNEGFIDGLGDAVEQ-GLVKAVGVSNYSE---------KRLRNAYEKLK 211 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l---~~-----~--~~~~~~~~~l~~l~~~-G~ir~iGvS~~~~---------~~l~~~~~~~~ 211 (365)
... ..+|++ +++.| |. . .......+-++.+++. |. -+||+..++- .+++.+....
T Consensus 80 ~~~-~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~K~- 154 (272)
T TIGR00676 80 REY-RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKRKV- 154 (272)
T ss_pred HHH-HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHHHH-
Confidence 754 778854 34445 21 0 1122344444555554 43 5788887532 2333333321
Q ss_pred hcCCceeeeeeecccccCCcccccHHHHHHHhCCeE
Q 017861 212 KRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 247 (365)
Q Consensus 212 ~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v 247 (365)
..|..+-+-|.-|++ +... .+++.|++.|+.+
T Consensus 155 ~aGA~f~iTQ~~fd~---~~~~-~~~~~~~~~gi~~ 186 (272)
T TIGR00676 155 DAGADYAITQLFFDN---DDYY-RFVDRCRAAGIDV 186 (272)
T ss_pred HcCCCeEeeccccCH---HHHH-HHHHHHHHcCCCC
Confidence 234567788887765 2222 4888999997764
No 169
>PRK07945 hypothetical protein; Provisional
Probab=35.07 E-value=4.1e+02 Score=25.40 Aligned_cols=157 Identities=10% Similarity=0.051 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHh---ccCCCCCC-cEEEEecCCCCCCCCCHHHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE---RKQRDPEV-EVTVATKFAALPWRLGRQSVLAA 150 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~---~~~~~~R~-~~~I~tK~~~~~~~~~~~~i~~~ 150 (365)
....++++.|.+.|+..+=.+++...... ...-+...+-..++. ...+. ++ +|++..-++..+ +.+.+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~-~~~~~~~~l~~y~~~i~~l~~ky-~~I~Il~GiE~d~~~-~g~~~~~--- 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTV-ANGLSAERLRKQLDVVAELNEEL-APFRILTGIEVDILD-DGSLDQE--- 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccC-CCCCCHHHHHHHHHHHHHHHHhc-CCceEEEEeEecccC-CCCcchh---
Confidence 34567899999999998877776432100 000012222222222 11111 12 333333333221 1222322
Q ss_pred HHHHHHHhCCCceeEEEe--CCC--CChHHHHHHHHHHHHcCCcCEEeecC------------CCHHHHHHHHHHHHhcC
Q 017861 151 LKDSLFRLGLSSVELYQL--AGI--WGNEGFIDGLGDAVEQGLVKAVGVSN------------YSEKRLRNAYEKLKKRG 214 (365)
Q Consensus 151 l~~SL~~Lg~d~iDl~~l--~~~--~~~~~~~~~l~~l~~~G~ir~iGvS~------------~~~~~l~~~~~~~~~~~ 214 (365)
++.|+. +|.+.. |.. .+.++..+.|.++.+.+.+..+|=-. .....++++.+.+.+.+
T Consensus 185 -~~~l~~-----~D~vIgSvH~~~~~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g 258 (335)
T PRK07945 185 -PELLDR-----LDVVVASVHSKLRMDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHG 258 (335)
T ss_pred -HHHHHh-----CCEEEEEeecCCCCCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhC
Confidence 333332 565555 643 23456678888888889888887321 11123466677777777
Q ss_pred CceeeeeeecccccCCcccccHHHHHHHhCCeE
Q 017861 215 IPLASNQVNYSLIYRKPEENGVKAACDELGITL 247 (365)
Q Consensus 215 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v 247 (365)
..+.+|--.+. ..+. ..++..|++.|+.+
T Consensus 259 ~~lEINt~~~r---~~P~-~~il~~a~e~G~~v 287 (335)
T PRK07945 259 TAVEINSRPER---RDPP-TRLLRLALDAGCLF 287 (335)
T ss_pred CEEEEeCCCCC---CCCh-HHHHHHHHHcCCeE
Confidence 66666643322 2222 24999999999975
No 170
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=35.05 E-value=93 Score=31.50 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=52.1
Q ss_pred CCCcEEEEecCCCCC----------------CCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcC
Q 017861 125 PEVEVTVATKFAALP----------------WRLGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQG 188 (365)
Q Consensus 125 ~R~~~~I~tK~~~~~----------------~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G 188 (365)
-+.++||++=+|.-. -..+++ +.-+|+.+.|+|.+. .+.++.++.+++.+++|
T Consensus 155 L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~~-------ri~kR~~~g~ld~~~----~~ldea~~~~~ea~~~~ 223 (546)
T PF01175_consen 155 LAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDPS-------RIEKRLEQGYLDEVT----DDLDEALARAKEARAKK 223 (546)
T ss_dssp -TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-HH-------HHHHHHHTTSSSEEE----SSHHHHHHHHHHHHHTT
T ss_pred CcceEEEEecccccccchHHHHHhcCceEEEEEECHH-------HHHHHHhCCCeeEEc----CCHHHHHHHHHHhhccC
Confidence 367888888887521 012344 445678889999654 36899999999999999
Q ss_pred CcCEEeecCCCHHHHHHHHHHHHhcCCceee--eeeec
Q 017861 189 LVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNY 224 (365)
Q Consensus 189 ~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~--~q~~~ 224 (365)
+..+||+-..-.+.++++.+. ++.|++ -|...
T Consensus 224 ~~~SIg~~GN~ad~~~~l~~~----~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 224 EPLSIGLLGNAADLWEELVER----GIIPDLVTDQTSA 257 (546)
T ss_dssp --EEEEEES-HHHHHHHHHHT----T---SEE---SST
T ss_pred CeeEEEEeccHHHHHHHHHHc----CCCCCcccCCCcc
Confidence 999999999777777777554 444444 45543
No 171
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=34.90 E-value=4.3e+02 Score=25.61 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=71.2
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeC--CC-----CChHHHHHHHH
Q 017861 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLA--GI-----WGNEGFIDGLG 182 (365)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~--~~-----~~~~~~~~~l~ 182 (365)
|+-|-+++++...+...+=++|.|=+.. ..-.+.+..-+++.-++.+. .++.++ .. ...+.++.+|-
T Consensus 59 ~~kL~~~i~~~~~~~~P~~i~v~~sC~~---~iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~ 132 (398)
T PF00148_consen 59 EEKLREAIKEIAEKYKPKAIFVVTSCVP---EIIGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALA 132 (398)
T ss_dssp HHHHHHHHHHHHHHHSTSEEEEEE-HHH---HHTTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCcEEEEECCCCH---HHhCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHHHHHHHHH
Confidence 7777777765432221367778877642 12223333444444445554 666662 22 12455566555
Q ss_pred HHH-H------cCCcCEEeecCCCHHHHHHHHHHHHhcCCceeee--------------eeecccccCCcccccHHHHHH
Q 017861 183 DAV-E------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN--------------QVNYSLIYRKPEENGVKAACD 241 (365)
Q Consensus 183 ~l~-~------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~--------------q~~~n~~~~~~~~~~~~~~~~ 241 (365)
+.. + .+.|--||.++.....+.++.+.++..|+++..+ +..+|+.........+.++.+
T Consensus 133 ~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~L~ 212 (398)
T PF00148_consen 133 EQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEWLE 212 (398)
T ss_dssp HHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHHHH
T ss_pred hhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHHHH
Confidence 544 2 3677778999877666666666666666532222 123454433322112445555
Q ss_pred H-hCCeEEE-ecccc
Q 017861 242 E-LGITLIA-YCPIA 254 (365)
Q Consensus 242 ~-~gi~v~a-~~~l~ 254 (365)
+ .|+.++. -.|++
T Consensus 213 e~~giP~~~~~~p~G 227 (398)
T PF00148_consen 213 ERFGIPYLYFPSPYG 227 (398)
T ss_dssp HHHT-EEEEEC-SBS
T ss_pred HHhCCCeeecccccc
Confidence 5 4999988 44443
No 172
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=34.60 E-value=3.9e+02 Score=25.07 Aligned_cols=118 Identities=19% Similarity=0.085 Sum_probs=66.1
Q ss_pred HHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHH-HHHHhccCCC--CCCcEEEEecCCCCCC---CCCHHHHHHH
Q 017861 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG-RFIKERKQRD--PEVEVTVATKFAALPW---RLGRQSVLAA 150 (365)
Q Consensus 77 ~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG-~al~~~~~~~--~R~~~~I~tK~~~~~~---~~~~~~i~~~ 150 (365)
+.+.+-.++..|-+.| .+|.|.| -. +| .-..+...+. +++.+....-.|.... .-..+.-...
T Consensus 51 av~~~~~~l~~ggrI~----~~GaGtS------g~-la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~ 119 (299)
T PRK05441 51 AVDAAAAALRQGGRLI----YIGAGTS------GR-LGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAEL 119 (299)
T ss_pred HHHHHHHHHHCCCEEE----EEcCcHH------HH-HHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHH
Confidence 3444555667788877 7888876 32 33 1122222111 2444444433332100 0011222233
Q ss_pred HHHHHHHhCCCceeEEEeCC-CCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHH
Q 017861 151 LKDSLFRLGLSSVELYQLAG-IWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 206 (365)
Q Consensus 151 l~~SL~~Lg~d~iDl~~l~~-~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 206 (365)
..+.|+..+...=|++..-. .-...+++++++.+++.| ++-|++++.+...+.+.
T Consensus 120 ~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~G-a~tI~IT~~~~s~La~~ 175 (299)
T PRK05441 120 GAADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERG-ALTIGISCNPGSPLSKE 175 (299)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCC-CeEEEEECCCCChhhHh
Confidence 44456666666678888821 124678999999999999 68899999876666554
No 173
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.54 E-value=3.2e+02 Score=26.41 Aligned_cols=82 Identities=11% Similarity=0.013 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHHcC--Cc--CEEeec--CCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcc----c---ccHHHH
Q 017861 173 GNEGFIDGLGDAVEQG--LV--KAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE----E---NGVKAA 239 (365)
Q Consensus 173 ~~~~~~~~l~~l~~~G--~i--r~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~----~---~~~~~~ 239 (365)
+.+++++++.+..+.+ +| +++=+. |.+.++++++.+.++.. +..++-++||++..... . ..+...
T Consensus 232 ~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l--~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~ 309 (349)
T PRK14463 232 PLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDI--PSKVNLIPFNEHEGCDFRSPTQEAIDRFHKY 309 (349)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcc--CceEEEEecCCCCCCCCCCCCHHHHHHHHHH
Confidence 3577788887776654 22 344444 45678888888877643 45777799998753211 1 136677
Q ss_pred HHHhCCeEEEecccccc
Q 017861 240 CDELGITLIAYCPIAQG 256 (365)
Q Consensus 240 ~~~~gi~v~a~~~l~~G 256 (365)
.+++||.+..+...|..
T Consensus 310 L~~~gi~v~vR~~~G~d 326 (349)
T PRK14463 310 LLDKHVTVITRSSRGSD 326 (349)
T ss_pred HHHCCceEEEeCCCCcc
Confidence 78899999999887743
No 174
>PRK00208 thiG thiazole synthase; Reviewed
Probab=34.16 E-value=3.7e+02 Score=24.65 Aligned_cols=68 Identities=10% Similarity=-0.016 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEeCCC----CChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHH
Q 017861 141 RLGRQSVLAALKDSLFRLGLSSVELYQLAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 209 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~----~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 209 (365)
.++.+...+-.+-..+-+++++|=|=.++|. .+..+++++.++|+++|.+- +=+++-++...+++.+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~ 143 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA 143 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc
Confidence 5778887788888888889999988888643 35889999999999999765 44667676666666554
No 175
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=34.08 E-value=1.9e+02 Score=26.01 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHc-CCcCEEeecCC-----CHHHHHHHHHHHHhcCCceeeeeeecccccCCccc-----ccHHHHHH
Q 017861 173 GNEGFIDGLGDAVEQ-GLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-----NGVKAACD 241 (365)
Q Consensus 173 ~~~~~~~~l~~l~~~-G~ir~iGvS~~-----~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-----~~~~~~~~ 241 (365)
..+.+.++++.+++. |++.-+|+.+. ..++|..+++.+.+.|++..++..-.-=-|..+.. .++.+.|+
T Consensus 12 ~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~ 91 (223)
T PF06415_consen 12 KNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLA 91 (223)
T ss_dssp TSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHH
Confidence 356677788888865 67777897764 35788999999998887655555543333333321 25888888
Q ss_pred HhCCeEEE
Q 017861 242 ELGITLIA 249 (365)
Q Consensus 242 ~~gi~v~a 249 (365)
+.|++-||
T Consensus 92 ~~~~g~IA 99 (223)
T PF06415_consen 92 EIGIGRIA 99 (223)
T ss_dssp HHTCTEEE
T ss_pred hhCCceEE
Confidence 98888666
No 176
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=33.98 E-value=4.8e+02 Score=25.83 Aligned_cols=100 Identities=17% Similarity=0.158 Sum_probs=50.8
Q ss_pred HHHHHHHHHhccCC-CCCCcEEEEecCCCCCCCCCHHHHHHH------------------HHHHHHHhCCCceeEEEe--
Q 017861 110 ETLLGRFIKERKQR-DPEVEVTVATKFAALPWRLGRQSVLAA------------------LKDSLFRLGLSSVELYQL-- 168 (365)
Q Consensus 110 E~~lG~al~~~~~~-~~R~~~~I~tK~~~~~~~~~~~~i~~~------------------l~~SL~~Lg~d~iDl~~l-- 168 (365)
-+.+.++++.++.. ...++||++|=... ....|..- --.++..+|...++.|+=
T Consensus 119 R~~VA~~I~rRDG~p~~p~dI~LT~GAS~-----ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe 193 (475)
T KOG0258|consen 119 RKHVAEFIERRDGIPADPEDIFLTTGASP-----AIRSILSLLIAGKKTGVLIPIPQYPLYSATISLLGGTQVPYYLDEE 193 (475)
T ss_pred HHHHHHHHHhccCCCCCHHHeeecCCCcH-----HHHHHHHHHhcCCCCceEeecCCCchhHHHHHHhCCcccceeeccc
Confidence 67888888887652 13578888876532 00000000 012344444444443333
Q ss_pred CC-CCChHHHHHHHHHHHHcCCcCEEeecCC--------CHHHHHHHHHHHHhcC
Q 017861 169 AG-IWGNEGFIDGLGDAVEQGLVKAVGVSNY--------SEKRLRNAYEKLKKRG 214 (365)
Q Consensus 169 ~~-~~~~~~~~~~l~~l~~~G~ir~iGvS~~--------~~~~l~~~~~~~~~~~ 214 (365)
.+ ..+.+++-..+++.++.=.+|.+-|-|- +.+.++.++..+.+.+
T Consensus 194 ~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~ 248 (475)
T KOG0258|consen 194 SNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEG 248 (475)
T ss_pred cCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcC
Confidence 11 1235566666666665556666665553 2244555655555544
No 177
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=33.88 E-value=4.2e+02 Score=25.16 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHC-CCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 73 KMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 73 ~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
+.++..+++++..+. ||+.+--+- |..-. .++..|-+.+.......-=+.+-|.||. ....+..+...+
T Consensus 126 ~~~~~~~~i~~i~~~~~i~~VvltG--GEPL~----~~d~~L~~ll~~l~~i~~~~~iri~tr~----~~~~p~rit~el 195 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEINEVILSG--GDPLM----AKDHRLDWLLNLLEQIPHLKRLRIHTRL----PVVIPDRITSGL 195 (321)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeC--ccccc----CCchHHHHHHHHHHhCCCCcEEEEecCc----ceeeHHHhhHHH
Confidence 345666666665544 776553222 22111 1133343333221100001355677765 234455666666
Q ss_pred HHHHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHcCCcCEEeec-------CCCHHHHHHHHHHHHhcCC
Q 017861 152 KDSLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRGI 215 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~G~ir~iGvS-------~~~~~~l~~~~~~~~~~~~ 215 (365)
-+.|++.|..++-+..+ |...-.+++.++++.|++.|.. +++. |.+.+.+.++.+.+...|+
T Consensus 196 ~~~L~~~~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~--v~~qtvllkgiNDn~~~l~~L~~~l~~~gv 265 (321)
T TIGR03821 196 CDLLANSRLQTVLVVHINHANEIDAEVADALAKLRNAGIT--LLNQSVLLRGVNDNADTLAALSERLFDAGV 265 (321)
T ss_pred HHHHHhcCCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCE--EEecceeeCCCCCCHHHHHHHHHHHHHcCC
Confidence 66777766544322233 2111245677777777777732 2221 2244555555555444443
No 178
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=33.82 E-value=3.5e+02 Score=24.27 Aligned_cols=108 Identities=22% Similarity=0.241 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCcCEEeecC--CCHH---HHHHHHHHHHhcCCceeeeeeecc-cccCCccc--------ccHHHHHHHhC
Q 017861 179 DGLGDAVEQGLVKAVGVSN--YSEK---RLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEE--------NGVKAACDELG 244 (365)
Q Consensus 179 ~~l~~l~~~G~ir~iGvS~--~~~~---~l~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~--------~~~~~~~~~~g 244 (365)
+.++..++.| ...+.+.. .-+. .+.++.+.+...|+.+...+...+ ++.+.... ...++.|++.|
T Consensus 19 ~~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg 97 (274)
T COG1082 19 EILRKAAELG-FDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELG 97 (274)
T ss_pred HHHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcC
Confidence 4456666667 66677773 2111 256666666777777776666665 45544321 12788899999
Q ss_pred CeEEEecccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017861 245 ITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 300 (365)
Q Consensus 245 i~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 300 (365)
+.++...+-... +..... ......+...+.+..+.++|+++++
T Consensus 98 ~~~vv~~~g~~~---~~~~~~----------~~~~~~~~~~~~l~~l~~~a~~~~i 140 (274)
T COG1082 98 AKVVVVHPGLGA---GADDPD----------SPEEARERWAEALEELAEIAEELGI 140 (274)
T ss_pred CCeEEeecccCC---cCCCCC----------CCcccHHHHHHHHHHHHHHHHHhCC
Confidence 887765443322 100000 0011124456667788888887754
No 179
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=33.78 E-value=1.3e+02 Score=25.86 Aligned_cols=62 Identities=24% Similarity=0.174 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCce----eEEEe--CCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHH
Q 017861 147 VLAALKDSLFRLGLSSV----ELYQL--AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 209 (365)
Q Consensus 147 i~~~l~~SL~~Lg~d~i----Dl~~l--~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 209 (365)
.+..++..++++|.+.- +.+.- ......+++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 45666667777776421 11100 12234567888999999988 55566888777776666544
No 180
>PRK15108 biotin synthase; Provisional
Probab=33.46 E-value=4.4e+02 Score=25.29 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEe-CCC--CChHHHHHHHHHHHHcCCcCEEeecC--CCHHHHHHHHHH-HHhcCC
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQL-AGI--WGNEGFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYEK-LKKRGI 215 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l-~~~--~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~~~l~~~~~~-~~~~~~ 215 (365)
.+++.|.+.++. ...+|...+-+..- .++ .+.+.+.+.++.+++.|. .+.+|+ .+.+.++++.+. ++..++
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n~ 152 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYNH 152 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 567778777764 56788888743222 122 235667777777777663 344555 455666666554 111111
Q ss_pred ceeeeeeecccccC-Ccc--cccHHHHHHHhCCeEEEecccccc
Q 017861 216 PLASNQVNYSLIYR-KPE--ENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 216 ~~~~~q~~~n~~~~-~~~--~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
.++...-.|.-+.. ... .-+.++.+++.|+.+.+...+|-|
T Consensus 153 ~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 153 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred ccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 12221111211111 111 114677778888877666566544
No 181
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=32.53 E-value=3.6e+02 Score=23.98 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
.++++..++.+.|.+.|+.-+=..+.| -....+.|++ .++-|+|=+|.+.-..+.+.-...+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----------v~~a~~~l~~-------~~v~v~tVigFP~G~~~~~~K~~E~ 76 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----------VPLAKELLKG-------TEVRICTVVGFPLGASTTDVKLYET 76 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----------HHHHHHHcCC-------CCCeEEEEeCCCCCCCcHHHHHHHH
Confidence 467999999999999988766554444 3333444432 3677777787643333444444445
Q ss_pred HHHHHHhCCCceeEEEeCC---CCChHHHHHHHHHHHHc--CC-cCEE-eecCCCHHHHHHHHHHHHhcCCceeeeeee-
Q 017861 152 KDSLFRLGLSSVELYQLAG---IWGNEGFIDGLGDAVEQ--GL-VKAV-GVSNYSEKRLRNAYEKLKKRGIPLASNQVN- 223 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~~---~~~~~~~~~~l~~l~~~--G~-ir~i-GvS~~~~~~l~~~~~~~~~~~~~~~~~q~~- 223 (365)
++.+ ++|.|-||+++-.. ..+.+.+.+.+...++. |+ ++-| =.+-.+.+++.++.+.+...| .+++...
T Consensus 77 ~~Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaG--ADfvKTsT 153 (211)
T TIGR00126 77 KEAI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAG--ADFVKTST 153 (211)
T ss_pred HHHH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC--CCEEEeCC
Confidence 5544 47999999988722 12456677777777764 54 2322 122235567777777766655 5666666
Q ss_pred -cccccCCcccccHHHHHHHhCCeEEEe
Q 017861 224 -YSLIYRKPEENGVKAACDELGITLIAY 250 (365)
Q Consensus 224 -~n~~~~~~~~~~~~~~~~~~gi~v~a~ 250 (365)
|..-.-..+.-.++...-...+++-+.
T Consensus 154 Gf~~~gat~~dv~~m~~~v~~~v~IKaa 181 (211)
T TIGR00126 154 GFGAGGATVEDVRLMRNTVGDTIGVKAS 181 (211)
T ss_pred CCCCCCCCHHHHHHHHHHhccCCeEEEe
Confidence 654332222212332222235666553
No 182
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=32.45 E-value=2e+02 Score=30.51 Aligned_cols=95 Identities=17% Similarity=0.101 Sum_probs=55.5
Q ss_pred eeecccccCCCCC-CCCCc---hHHHHHHHHHhccCCCCCCcEEEEecCCCC---------CCCCC----HHHHHHHHHH
Q 017861 91 FFDTAEVYGSRAS-FGAIN---SETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLG----RQSVLAALKD 153 (365)
Q Consensus 91 ~~DTA~~Yg~g~s-~~~~~---sE~~lG~al~~~~~~~~R~~~~I~tK~~~~---------~~~~~----~~~i~~~l~~ 153 (365)
+|.|+.-|.+|.. .|+.. .-.++.++++... .+++..+=.-.+ ....+ .+...+.+.+
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G-----~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 79 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRG-----HEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKR 79 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcC-----CeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 6777777777654 24443 2344455554432 345444422110 00122 3457788889
Q ss_pred HHHHhCCCceeEEEeC-CCCChHHHHHHHHHHHHcCCcC
Q 017861 154 SLFRLGLSSVELYQLA-GIWGNEGFIDGLGDAVEQGLVK 191 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~-~~~~~~~~~~~l~~l~~~G~ir 191 (365)
.+++||++ +|.+.-. +..-.+.+.+.+.+|.++|.|-
T Consensus 80 ~~~~l~i~-~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy 117 (673)
T PRK00133 80 DFAGFGIS-FDNYGSTHSEENRELAQEIYLKLKENGYIY 117 (673)
T ss_pred HHHHhCCC-CCCCccCCcHHHHHHHHHHHHHHHHCCCEE
Confidence 99999998 4754332 2123678889999999999875
No 183
>PRK01060 endonuclease IV; Provisional
Probab=32.41 E-value=2.9e+02 Score=25.16 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=33.9
Q ss_pred EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecc-cc--cCCc----ccccHHHHHHHhCCe---EEEeccc
Q 017861 192 AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS-LI--YRKP----EENGVKAACDELGIT---LIAYCPI 253 (365)
Q Consensus 192 ~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n-~~--~~~~----~~~~~~~~~~~~gi~---v~a~~~l 253 (365)
.+|+-+.....++++++.+...| ++.+|+... +. .... ...++.+.++++|+. +.+..|+
T Consensus 3 ~~g~~~~~~~~~~~~l~~~~~~G--~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~ 72 (281)
T PRK01060 3 LIGAHVSAAGGLEGAVAEAAEIG--ANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPY 72 (281)
T ss_pred eEEEeeecCCCHHHHHHHHHHcC--CCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecce
Confidence 46766554445777777766555 667766432 11 1101 112377788899998 5554443
No 184
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=32.39 E-value=3.3e+02 Score=23.66 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhcc-CCC--CCCcEEEEecCCC-CCCCC-CHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERK-QRD--PEVEVTVATKFAA-LPWRL-GRQSVL 148 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~-~~~--~R~~~~I~tK~~~-~~~~~-~~~~i~ 148 (365)
-+++.+.|..++..|-+.+ .||.|.| -.+++.+...- .+. .|-.+.+..-... ..... ......
T Consensus 30 i~~a~~~i~~al~~~~rI~----i~G~G~S-------~~~A~~~a~~l~~~~~~~r~g~~~~~~~d~~~~~~~~~d~~~~ 98 (192)
T PRK00414 30 IQRAAVLIADSFKAGGKVL----SCGNGGS-------HCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYD 98 (192)
T ss_pred HHHHHHHHHHHHHCCCEEE----EEeCcHH-------HHHHHHHHHHhcccccCCCCCceEEecCcHHHHhhhhccCCHH
Confidence 4678888889999998887 8999865 34444443110 000 0111111110000 00000 000011
Q ss_pred HHHHHHHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHH
Q 017861 149 AALKDSLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 206 (365)
Q Consensus 149 ~~l~~SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 206 (365)
.-+.+.+..+. +.=|++.+ ...-...+++++++.+++.| ++-|++++.....+.+.
T Consensus 99 ~~~~~~~~~~~-~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g-~~iI~iT~~~~s~l~~~ 155 (192)
T PRK00414 99 YVFSRYVEAVG-REGDVLLGISTSGNSGNIIKAIEAARAKG-MKVITLTGKDGGKMAGL 155 (192)
T ss_pred HHHHHHHHHhC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCC-CeEEEEeCCCCChhHHh
Confidence 22233333333 44578777 22234788999999999997 88899999876666554
No 185
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=32.25 E-value=3.3e+02 Score=26.95 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEe---CCC------C-ChH---HHH-HHHHHHHHcCCcCEEeecCCC
Q 017861 141 RLGRQSVLAALKDSLFRLGLSSVELYQL---AGI------W-GNE---GFI-DGLGDAVEQGLVKAVGVSNYS 199 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~d~iDl~~l---~~~------~-~~~---~~~-~~l~~l~~~G~ir~iGvS~~~ 199 (365)
..+.+.+++.++..+ +|+.+++.++.+ |.. . +.+ +.+ .+.+.|.+.|. +.+++++|.
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~fa 274 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFR 274 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeeccee
Confidence 567888888888776 589999999988 221 0 112 222 33555667775 558888884
No 186
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=32.17 E-value=5e+02 Score=25.49 Aligned_cols=145 Identities=12% Similarity=0.137 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHCCCCe-eecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEe--------cCCCCCCCCCHH
Q 017861 75 KAAKAAFDTSLDNGITF-FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT--------KFAALPWRLGRQ 145 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~-~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~t--------K~~~~~~~~~~~ 145 (365)
++=.+-+..|.+.|... .|-+ ..|+ -.-+.+++-+. ..+-|-| |+.....+.+.+
T Consensus 78 ~~EveK~~~A~~~GADtvMDLS-tGgd---------l~eiR~~ii~~------s~vPvGTVPIYqA~~~~~~~~~~~t~d 141 (432)
T COG0422 78 DEEVEKAVWAIKWGADTVMDLS-TGGD---------LHEIREWIIRN------SPVPVGTVPIYQALEEVNGKVEDLTED 141 (432)
T ss_pred HHHHHHHHHHHHhCcceeEecc-cCCC---------HHHHHHHHHhc------CCCCcCCchHHHHHHHHhcchhhCCHH
Confidence 44455677888999664 4443 3454 44455555332 1121111 111011457788
Q ss_pred HHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecc
Q 017861 146 SVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 225 (365)
Q Consensus 146 ~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 225 (365)
.+...+++..+ |-+|.+-+|. .-.++.++.+++.| |..|+-+-...-+...+-. + ..-|
T Consensus 142 ~~~~~v~~qa~----~GVdfmTIHa----GV~~~~~~~~~~~~--R~~giVSRGGsi~a~Wml~---~--------~~EN 200 (432)
T COG0422 142 DFFDTVEKQAE----QGVDFMTIHA----GVLLEYVPRTKRSG--RVTGIVSRGGSIMAAWMLH---N--------HKEN 200 (432)
T ss_pred HHHHHHHHHHH----hCCcEEEeeh----hhhHHHHHHHHhcC--ceeeeeccchHHHHHHHHH---c--------CCcC
Confidence 88888877765 4467677874 23678899999999 6678877776666655432 1 1234
Q ss_pred cccCCcccccHHHHHHHhCCeEEEecccccccccCCC
Q 017861 226 LIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 262 (365)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~ 262 (365)
++....+ ++++.|++++|.+. |+.|+-.|..
T Consensus 201 ply~~fd--~lleI~k~yDvtlS----LGDglRPG~i 231 (432)
T COG0422 201 PLYEHFD--ELLEIFKEYDVTLS----LGDGLRPGCI 231 (432)
T ss_pred chhhhHH--HHHHHHHHhCeeee----ccCCCCCCcc
Confidence 4444333 59999999999874 5666544433
No 187
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=31.92 E-value=28 Score=34.76 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=23.2
Q ss_pred HHHHHcCCCHHHHHHHHHhcCCCc--EEeec
Q 017861 293 ELGENYSKTSTQVGLNWLLAQDNV--VPIPG 321 (365)
Q Consensus 293 ~ia~~~~~s~~qlal~~~l~~~~v--~~i~g 321 (365)
.++..||.|.+.--|+|++...+. +.++|
T Consensus 111 aVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 111 AVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred EEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 345679999999999999998643 77776
No 188
>PLN02540 methylenetetrahydrofolate reductase
Probab=31.83 E-value=6e+02 Score=26.37 Aligned_cols=151 Identities=20% Similarity=0.248 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHH--HHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF--IKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~a--l~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
.+...+.+++-.+.|-.|||. .||.|.+ .++.-+.-+ +++.. .+-.+-.+.. .+.+...+...|
T Consensus 14 ~~nL~~~~~rl~~~~P~FisV--T~gAgGs----t~~~Tl~la~~lq~~~------Gie~i~HLTC--rd~n~~~L~~~L 79 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDI--TWGAGGS----TADLTLDIANRMQNMI------CVETMMHLTC--TNMPVEKIDHAL 79 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEe--CCCCCCC----cHHHHHHHHHHHHHhc------CCCeeEEeee--cCCCHHHHHHHH
Confidence 456666777777889999997 4555433 225544332 33221 1111222211 456677777777
Q ss_pred HHHHHHhCCCceeEEEe-CCC------C-----ChHHHHHHHHHHHHc-CCcCEEeecCCCH------------------
Q 017861 152 KDSLFRLGLSSVELYQL-AGI------W-----GNEGFIDGLGDAVEQ-GLVKAVGVSNYSE------------------ 200 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l-~~~------~-----~~~~~~~~l~~l~~~-G~ir~iGvS~~~~------------------ 200 (365)
++. ..+|++ .+|.| -|. + ......+-++.+++. |..-.|||+.++.
T Consensus 80 ~~a-~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~ 156 (565)
T PLN02540 80 ETI-KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQ 156 (565)
T ss_pred HHH-HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChH
Confidence 766 888865 34555 111 1 112244444445554 5567799997642
Q ss_pred HHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCe
Q 017861 201 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 246 (365)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~ 246 (365)
.++..+.+.. ..|..+-+-|.-|+. +... .+++.|++.||.
T Consensus 157 ~dl~~Lk~Kv-dAGAdFiITQlfFD~---d~f~-~f~~~~r~~Gi~ 197 (565)
T PLN02540 157 KDLAYLKEKV-DAGADLIITQLFYDT---DIFL-KFVNDCRQIGIT 197 (565)
T ss_pred HHHHHHHHHH-HcCCCEEeeccccCH---HHHH-HHHHHHHhcCCC
Confidence 2334333332 135568888887765 2222 388999999853
No 189
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=31.71 E-value=4.4e+02 Score=25.27 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEe-C--CC---------CChHHHHHH-HHHHHHcCCcCEEeecCCC
Q 017861 141 RLGRQSVLAALKDSLFRLGLSSVELYQL-A--GI---------WGNEGFIDG-LGDAVEQGLVKAVGVSNYS 199 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~d~iDl~~l-~--~~---------~~~~~~~~~-l~~l~~~G~ir~iGvS~~~ 199 (365)
..+.+.+++.++..+ +|+.+++.++.+ + .. .+.++.+.. .+.|.+.|. ..+++|||.
T Consensus 161 gqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa 230 (350)
T PRK08446 161 LDNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFG 230 (350)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhh
Confidence 467888888887654 599999999988 2 21 112233333 445566675 457887774
No 190
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=31.65 E-value=1.8e+02 Score=26.54 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCC
Q 017861 174 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 245 (365)
Q Consensus 174 ~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi 245 (365)
..++.+.|+.|+++|..-.| +||.+...+...++.+...+..++.+-..-......+...-+...+++.|+
T Consensus 103 ~pg~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~ 173 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGV 173 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCC
Confidence 45677788888999854444 566666666666554432232234443333322222222235666666665
No 191
>PRK05588 histidinol-phosphatase; Provisional
Probab=31.32 E-value=4e+02 Score=24.10 Aligned_cols=167 Identities=10% Similarity=0.113 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCC---CCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFG---AINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~---~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
....+.++.|.+.|+..+ .+++........ ..+-+..+ +.++... ..+|++.--++. .++ ....+
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~----~~~I~~GiE~~~-----~~~-~~~~~ 83 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYR----NNKLLLGIELGM-----EKD-LIEEN 83 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHh----cCCcceEEEecc-----cCC-CHHHH
Confidence 346678999999999998 777742210000 00012222 2222221 135555555532 222 34566
Q ss_pred HHHHHHhCCCceeEEEeCCC--C-----------ChHH----HHHHHHHHHH-cCCcCEEe---ec----C---------
Q 017861 152 KDSLFRLGLSSVELYQLAGI--W-----------GNEG----FIDGLGDAVE-QGLVKAVG---VS----N--------- 197 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~~~--~-----------~~~~----~~~~l~~l~~-~G~ir~iG---vS----~--------- 197 (365)
++.|++...||+ +..+|.. + +.++ .++.+.++++ .|++..+| +- .
T Consensus 84 ~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~ 162 (255)
T PRK05588 84 KELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYD 162 (255)
T ss_pred HHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccHH
Confidence 777877776654 3444531 1 2233 3466777776 46565544 11 0
Q ss_pred CCHHHHHHHHHHHHhcCCceeeeeeeccc-ccCCcccccHHHHHHHhCCeEEEeccccc
Q 017861 198 YSEKRLRNAYEKLKKRGIPLASNQVNYSL-IYRKPEENGVKAACDELGITLIAYCPIAQ 255 (365)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~q~~~n~-~~~~~~~~~~~~~~~~~gi~v~a~~~l~~ 255 (365)
+-...++++++.+.+.+..+.+|--.+.. ....+ ...++..|++.|+.+++.++-+.
T Consensus 163 ~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~-~~~~l~~~~~~g~~~i~lgSDAH 220 (255)
T PRK05588 163 EFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVEN-LVKIYKRFYELGGKYITLGSDAH 220 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCC-HHHHHHHHHHcCCcEEEEECCCC
Confidence 01245677777777777666666432211 11111 12378889999988666555543
No 192
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=31.17 E-value=4.5e+02 Score=24.68 Aligned_cols=121 Identities=12% Similarity=0.015 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHH-HHHHHHhccC-CCCCCcEEEEecCCCCCCC---CCHHHHHH
Q 017861 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL-LGRFIKERKQ-RDPEVEVTVATKFAALPWR---LGRQSVLA 149 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~-lG~al~~~~~-~~~R~~~~I~tK~~~~~~~---~~~~~i~~ 149 (365)
+++.+.+..++..|.+.| .+|.|.| -.+ +-.+..-.+. ..+++.+....-.|..... ...+.-..
T Consensus 45 ~~a~~~~~~~l~~ggrl~----~~GaG~S------g~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~ 114 (296)
T PRK12570 45 AQAVDKIVAAFKKGGRLI----YMGAGTS------GRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPE 114 (296)
T ss_pred HHHHHHHHHHHHcCCeEE----EECCchh------HHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHH
Confidence 344455666788899988 7888876 322 1111111110 0123443322222211000 00011122
Q ss_pred HHHHHHHHhCCCceeEEEeC-CCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHH
Q 017861 150 ALKDSLFRLGLSSVELYQLA-GIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 206 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l~-~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 206 (365)
...+.|...+...=|+++.- ..-...+++++++.+++.| ++.|++++.....+.+.
T Consensus 115 ~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~ 171 (296)
T PRK12570 115 LGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIG-ATTIALSCNPDSPIAKI 171 (296)
T ss_pred HHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 23344555665555888882 2224678999999999998 77799999876665543
No 193
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=30.99 E-value=2.3e+02 Score=21.36 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCCceeEEEe---CCC------CChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHH
Q 017861 145 QSVLAALKDSLFRLGLSSVELYQL---AGI------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 207 (365)
Q Consensus 145 ~~i~~~l~~SL~~Lg~d~iDl~~l---~~~------~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 207 (365)
..-.+++++.++.+|..-.++|+. +|. .+.+......-.+...|.++.-=+--++.+++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 445677888999999999998888 222 235556667778888899998667777888877663
No 194
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.94 E-value=3.5e+02 Score=26.76 Aligned_cols=101 Identities=10% Similarity=0.078 Sum_probs=61.9
Q ss_pred HHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCC-CHHHHHHHHHHHHhcCCceeeeeeecccccCC
Q 017861 152 KDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 230 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 230 (365)
-..+..|--.-..++... ....++...|.++.. ++-+..++ +...++.+....++ +++..+++.+-||+..-
T Consensus 106 ~~al~~L~~~g~~iV~~~--~~Y~gT~~~l~~~~~----~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v 178 (409)
T KOG0053|consen 106 TVALLHLLPAGDHIVATG--DVYGGTLRILRKFLP----KFGGEGDFVDVDDLKKILKAIKE-NTKAVFLESPSNPLLKV 178 (409)
T ss_pred HHHHHHhcCCCCcEEEeC--CCcccHHHHHHHHHH----HhCceeeeechhhHHHHHHhhcc-CceEEEEECCCCCcccc
Confidence 333344433333444443 234566666666655 32233333 55566666555544 35677888888987765
Q ss_pred cccccHHHHHHHhCCeEEEeccccccccc
Q 017861 231 PEENGVKAACDELGITLIAYCPIAQGALT 259 (365)
Q Consensus 231 ~~~~~~~~~~~~~gi~v~a~~~l~~G~L~ 259 (365)
..-..+.+.|+++|+.++.=..++.+.+.
T Consensus 179 ~DI~~l~~la~~~g~~vvVDnTf~~p~~~ 207 (409)
T KOG0053|consen 179 PDIEKLARLAHKYGFLVVVDNTFGSPYNQ 207 (409)
T ss_pred ccHHHHHHHHhhCCCEEEEeCCcCccccc
Confidence 54446899999999999999998887554
No 195
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=30.82 E-value=3.2e+02 Score=28.58 Aligned_cols=65 Identities=18% Similarity=0.091 Sum_probs=43.4
Q ss_pred HHhCCCceeEEEeCCC---CChHHHHHHHHHHHHcCCcCEEeec-CCCHHHHHHHHHHHHhcCCceeeeeeecc
Q 017861 156 FRLGLSSVELYQLAGI---WGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 225 (365)
Q Consensus 156 ~~Lg~d~iDl~~l~~~---~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 225 (365)
..+|.|++=+++.+.. .+.+.+...+.+....-.++.+||- |-+++.+.++.+. ..++++|+.-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-----~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-----NGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence 4589999999877432 2233314444443333457889986 6788888888765 56899999754
No 196
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=30.76 E-value=1.6e+02 Score=29.06 Aligned_cols=74 Identities=7% Similarity=-0.059 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHc------CCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEE
Q 017861 175 EGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLI 248 (365)
Q Consensus 175 ~~~~~~l~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~ 248 (365)
++-++.+.+|++. ..=-..+=+.++.+.+.++++. --.+++|+..+-+---.+...+.++|+++||.++
T Consensus 278 ~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~ 352 (408)
T TIGR01502 278 QAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAY 352 (408)
T ss_pred hhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEE
Confidence 3557777777765 3223556666778888888665 3478888876643221122358999999999999
Q ss_pred Eeccc
Q 017861 249 AYCPI 253 (365)
Q Consensus 249 a~~~l 253 (365)
..+..
T Consensus 353 ~g~~~ 357 (408)
T TIGR01502 353 VGGTC 357 (408)
T ss_pred EeCCC
Confidence 87665
No 197
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=30.61 E-value=1.2e+02 Score=25.16 Aligned_cols=61 Identities=21% Similarity=0.141 Sum_probs=34.0
Q ss_pred CcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeE-EEecccc
Q 017861 189 LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL-IAYCPIA 254 (365)
Q Consensus 189 ~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v-~a~~~l~ 254 (365)
+..-|.|...+.+.+..+.+. ..++++.+++.--.+.......+..|.++|+.+ +.|+|+-
T Consensus 24 ~~divav~p~~~~~~~~a~~~-----~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l 85 (150)
T PF01876_consen 24 KYDIVAVRPGSEKAFRAACSD-----PRVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLL 85 (150)
T ss_dssp --SEEEEE-S-HHHHHHHHHT-----T--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHH
T ss_pred CceEEEEEcCCHHHHHHHHhc-----CCCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhh
Confidence 455677777777777777554 347777776631111222235899999999988 7787776
No 198
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.55 E-value=3.6e+02 Score=26.09 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHc--CCcC--EEeec--CCCHHHHHHHHHHHHhcCCceeeeeeecccccCCccc-------ccHHH
Q 017861 172 WGNEGFIDGLGDAVEQ--GLVK--AVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKA 238 (365)
Q Consensus 172 ~~~~~~~~~l~~l~~~--G~ir--~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~~~~ 238 (365)
++.+++++++.+..+. ++|. |+=+. |.+.+++.++.+.++ +.+..++-++||+....... ..+.+
T Consensus 231 ~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~--~~~~~VNLIp~Np~~~~~~~~~s~~~~~~F~~ 308 (345)
T PRK14466 231 FSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLR--GIDCRVNLIRFHAIPGVDLEGSDMARMEAFRD 308 (345)
T ss_pred CCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHc--CCCceEEEEecCCCCCCCCcCCCHHHHHHHHH
Confidence 4578899999986544 2322 34443 667888888888765 34578899999975432211 13666
Q ss_pred HHHHhCCeEEEeccccccc
Q 017861 239 ACDELGITLIAYCPIAQGA 257 (365)
Q Consensus 239 ~~~~~gi~v~a~~~l~~G~ 257 (365)
..+++||.+..+...|..+
T Consensus 309 ~L~~~gi~~tvR~s~G~dI 327 (345)
T PRK14466 309 YLTSHGVFTTIRASRGEDI 327 (345)
T ss_pred HHHHCCCcEEEeCCCCCch
Confidence 7788999999988877543
No 199
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=30.50 E-value=3.8e+02 Score=23.61 Aligned_cols=89 Identities=10% Similarity=0.136 Sum_probs=55.4
Q ss_pred HHHhCCCceeEEEe---CCC--CC----hHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecc
Q 017861 155 LFRLGLSSVELYQL---AGI--WG----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 225 (365)
Q Consensus 155 L~~Lg~d~iDl~~l---~~~--~~----~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 225 (365)
+..-|.|+||+=.- |.. .+ .+.+...++.+++...=--|.+-++.++.++.+++. |.++-.+...+.
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~----g~~~ind~~~~~ 103 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA----GADIINDISGFE 103 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH----TSSEEEETTTTS
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc----CcceEEeccccc
Confidence 45568999998755 221 11 334555566666511113588899999999998775 344433222222
Q ss_pred cccCCcccccHHHHHHHhCCeEEEeccc
Q 017861 226 LIYRKPEENGVKAACDELGITLIAYCPI 253 (365)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~gi~v~a~~~l 253 (365)
. . .++++.+++++..++++..-
T Consensus 104 ~---~---~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D---D---PEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S---S---TTHHHHHHHHTSEEEEESES
T ss_pred c---c---chhhhhhhcCCCEEEEEecc
Confidence 1 1 14999999999999998665
No 200
>PRK05660 HemN family oxidoreductase; Provisional
Probab=30.17 E-value=2.9e+02 Score=26.83 Aligned_cols=86 Identities=16% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 017861 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (365)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (365)
+.+++.+.++.+.+.|+..+..-=.||- ...+.+.+++.++
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Gl---------------------------------------pgqt~~~~~~~l~ 181 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGL---------------------------------------PDQSLEEALDDLR 181 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCceeEEEe---------------CCCCChHHHHHHHHHHHHcCCcCEEeecCC
Q 017861 153 DSLFRLGLSSVELYQL---------------AGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 198 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l---------------~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~ 198 (365)
..++ |+.|+|.+|.+ |+.....+.++...+..++.=-..+.+|||
T Consensus 182 ~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~f 241 (378)
T PRK05660 182 QAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241 (378)
T ss_pred HHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccc
No 201
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=30.04 E-value=1.9e+02 Score=25.94 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCC
Q 017861 173 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 245 (365)
Q Consensus 173 ~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi 245 (365)
..+++.+.|+.|++.|.--.| +||.+...++..++.+.-.+..++.+-..-......+...-+...+++.|+
T Consensus 100 ~~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~ 171 (253)
T TIGR01422 100 PIPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGV 171 (253)
T ss_pred cCCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCC
Confidence 355778888899999844344 677676777766655433222124433322222222222235555666665
No 202
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=29.93 E-value=4e+02 Score=23.72 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHcCCcCEEeecCCCHH----HHHHHHHHHHhcCCc-eeeeeeecccccCCcc-cccHHHHHHHhCCeE
Q 017861 174 NEGFIDGLGDAVEQGLVKAVGVSNYSEK----RLRNAYEKLKKRGIP-LASNQVNYSLIYRKPE-ENGVKAACDELGITL 247 (365)
Q Consensus 174 ~~~~~~~l~~l~~~G~ir~iGvS~~~~~----~l~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~-~~~~~~~~~~~gi~v 247 (365)
.+.+++.+.+.+.+|..--|=+-+|... ..+..++.+++.|.. |-++ |-.++ ...+...|++|||.+
T Consensus 79 l~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiiv-------DlPpEEa~~~Rne~~k~gisl 151 (268)
T KOG4175|consen 79 LNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIV-------DLPPEEAETLRNEARKHGISL 151 (268)
T ss_pred HHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEec-------cCChHHHHHHHHHHHhcCceE
Confidence 5677888888888887666665555322 234455555555532 3332 22222 235889999999988
Q ss_pred EE
Q 017861 248 IA 249 (365)
Q Consensus 248 ~a 249 (365)
+.
T Consensus 152 vp 153 (268)
T KOG4175|consen 152 VP 153 (268)
T ss_pred EE
Confidence 74
No 203
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.91 E-value=4e+02 Score=23.71 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhCCCc--eeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceee
Q 017861 144 RQSVLAALKDSLFRLGLSS--VELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 219 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~--iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 219 (365)
...+.+.+++.++++|..+ +++++.....+.+...+.++.+...+ +..|=+...+...+...++.+...++|+..
T Consensus 14 ~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~-vDgiii~~~~~~~~~~~i~~~~~~gIpvV~ 90 (274)
T cd06311 14 TAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRK-IDALVILPFESAPLTQPVAKAKKAGIFVVV 90 (274)
T ss_pred HHHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcC-CCEEEEeCCCchhhHHHHHHHHHCCCeEEE
Confidence 5668888888888887544 45555532223444445555565543 677777665544444444445555666433
No 204
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=29.91 E-value=3.6e+02 Score=23.99 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHCCCCeeec
Q 017861 75 KAAKAAFDTSLDNGITFFDT 94 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DT 94 (365)
|.....++.|++.|+..|++
T Consensus 15 ENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 15 TNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred ccHHHHHHHHHHhCCCEEEE
Confidence 77888999999999998875
No 205
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=29.68 E-value=2.4e+02 Score=26.42 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=36.9
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHhcCCCcEEeecCCCHHHHHHHHhh
Q 017861 290 RIKELGENYSK------TSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGA 334 (365)
Q Consensus 290 ~l~~ia~~~~~------s~~qlal~~~l~~~~v~~i~g~~~~~~l~en~~a 334 (365)
+|.++|++.|. ++.++=..|+.....|.+-.|+++|+.|-+++-.
T Consensus 229 rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~ 279 (294)
T COG0761 229 RLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIA 279 (294)
T ss_pred HHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHH
Confidence 88999999885 6788888999886656889999999988776543
No 206
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=29.62 E-value=85 Score=31.26 Aligned_cols=102 Identities=14% Similarity=0.055 Sum_probs=63.0
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCC----CCCC---CHH--HHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHH
Q 017861 110 ETLLGRFIKERKQRDPEVEVTVATKFAAL----PWRL---GRQ--SVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDG 180 (365)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~----~~~~---~~~--~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~ 180 (365)
|.++..+-+.... +-+.+++|+.=.|.- |... ... .++-.-.+.=+||.+.|+|..- ...+|.++.
T Consensus 151 eT~~~~~r~h~~g-dL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~a----~~ldeAl~~ 225 (561)
T COG2987 151 ETFAEAGRQHFGG-DLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEIA----ETLDEALAL 225 (561)
T ss_pred HHHHHHHHHhcCC-CccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhhc----CCHHHHHHH
Confidence 4444443333322 226788888877642 1000 000 0111122334678889988432 358999999
Q ss_pred HHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeee
Q 017861 181 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 220 (365)
Q Consensus 181 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 220 (365)
.++..++|+-.+||+-..-.+.+.++++. ++.|+++
T Consensus 226 a~~~~~ag~p~SIgl~GNaaei~~~l~~r----~~~pD~v 261 (561)
T COG2987 226 AEEATAAGEPISIGLLGNAAEILPELLRR----GIRPDLV 261 (561)
T ss_pred HHHHHhcCCceEEEEeccHHHHHHHHHHc----CCCCcee
Confidence 99999999999999999877777777654 4566654
No 207
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=29.55 E-value=2.9e+02 Score=29.11 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHcCCcCE
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQGLVKA 192 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~G~ir~ 192 (365)
.+.+.+.+++.+++||++ .|.+.= .+....+.+.+.+..|.+.|.|-.
T Consensus 72 ~d~~~~~fk~~l~~lgI~-~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 72 VDEISAGFKELWKKLDIS-YDKFIRTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred HHHHHHHHHHHHHHcCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 456788899999999996 475443 222235667888999999999873
No 208
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=29.54 E-value=1.2e+02 Score=22.74 Aligned_cols=55 Identities=11% Similarity=0.043 Sum_probs=34.1
Q ss_pred HHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcC-CcCEEeecCCC-HHHHHHHHH
Q 017861 154 SLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQG-LVKAVGVSNYS-EKRLRNAYE 208 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~~~-~~~l~~~~~ 208 (365)
.++.++....|++++.-..+.....+.++.+++.+ .++-|-+++.. .....++++
T Consensus 35 ~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~ 91 (112)
T PF00072_consen 35 ALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALR 91 (112)
T ss_dssp HHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHH
T ss_pred HHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHH
Confidence 33444445599999932223345566777777766 88888888764 455555543
No 209
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=29.50 E-value=4.3e+02 Score=23.95 Aligned_cols=93 Identities=14% Similarity=0.087 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCceeEEEeCCC-CChHHHHHHHHHHHHcCCcCEEeecCC-CHHHHHHHHHHHHhcCCceeeeeeecccc
Q 017861 150 ALKDSLFRLGLSSVELYQLAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLI 227 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l~~~-~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 227 (365)
.+-+-|+++|.|.|.+--++.. ....--++.+.++++.-.+.-|..... +++.++++... ...+.+.+---+.
T Consensus 159 ~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~-----g~~dgv~~g~a~~ 233 (254)
T TIGR00735 159 EWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK-----GKADAALAASVFH 233 (254)
T ss_pred HHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc-----CCcceeeEhHHHh
Confidence 3334456777654443222110 001112556666676666777776654 66788777654 1244443322222
Q ss_pred cCCcccccHHHHHHHhCCeE
Q 017861 228 YRKPEENGVKAACDELGITL 247 (365)
Q Consensus 228 ~~~~~~~~~~~~~~~~gi~v 247 (365)
.....-.++.+.|+++|+.+
T Consensus 234 ~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 234 YREITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCCCHHHHHHHHHHCCCcc
Confidence 22222235889999998864
No 210
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=29.44 E-value=1.1e+02 Score=29.12 Aligned_cols=61 Identities=23% Similarity=0.451 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCcCEEeecCCCH-------HHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHH
Q 017861 177 FIDGLGDAVEQGLVKAVGVSNYSE-------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 240 (365)
Q Consensus 177 ~~~~l~~l~~~G~ir~iGvS~~~~-------~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~ 240 (365)
+-+++++++++|.-|.+-+|-|+. ..+..+.+.++..+.+.+ +.++++++++.+.+++...
T Consensus 142 TEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~---~~wsiIdrW~t~~glIkaf 209 (395)
T KOG1321|consen 142 TEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERD---IKWSIIDRWPTREGLIKAF 209 (395)
T ss_pred cHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccC---CceEeeccccccchHHHHH
Confidence 557788999999999999887653 335556555666554443 3778888887765555444
No 211
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=29.30 E-value=61 Score=26.48 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCC-cEEEEecCC-CCCCCCCHHHHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEV-EVTVATKFA-ALPWRLGRQSVLAAL 151 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~-~~~I~tK~~-~~~~~~~~~~i~~~l 151 (365)
-+++.+++..+++.|.+.| .+|+|.| +..++++..++........++. .+.+.+... ....+...+ ..-.
T Consensus 21 i~~aa~~i~~~~~~gg~i~----~~G~G~S--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~ 92 (138)
T PF13580_consen 21 IEKAADLIAEALRNGGRIF----VCGNGHS--AAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYD--EGFA 92 (138)
T ss_dssp HHHHHHHHHHHHHTT--EE----EEESTHH--HHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGG--GTHH
T ss_pred HHHHHHHHHHHHHCCCEEE----EEcCchh--hhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchh--hHHH
Confidence 4678888999999999999 7898876 1123555556554432211111 111111100 000001111 1111
Q ss_pred HHHHHHhCCCceeEEEeCC-CCChHHHHHHHHHHHHcCCcCEEeec
Q 017861 152 KDSLFRLGLSSVELYQLAG-IWGNEGFIDGLGDAVEQGLVKAVGVS 196 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~~-~~~~~~~~~~l~~l~~~G~ir~iGvS 196 (365)
+..++.+....=|++++-+ .-...-++++++..++.|. +-||++
T Consensus 93 ~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~-~vIalT 137 (138)
T PF13580_consen 93 RQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGM-KVIALT 137 (138)
T ss_dssp HHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT--EEEEEE
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence 2222222344557777721 1235667888888888874 335554
No 212
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=29.24 E-value=4.9e+02 Score=24.50 Aligned_cols=161 Identities=14% Similarity=0.237 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHCCCC-eeecccccCCCCCCCCCchHHHHHHHHH---hccCCCCCCcEEEEecCCCCCCC-CCHHHHHH
Q 017861 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPWR-LGRQSVLA 149 (365)
Q Consensus 75 ~~~~~~l~~A~~~Gin-~~DTA~~Yg~g~s~~~~~sE~~lG~al~---~~~~~~~R~~~~I~tK~~~~~~~-~~~~~i~~ 149 (365)
+...++++.|.+.|+. +||.=+.+-. +..+--+.+ ..... +..++++--. +- .+++.+.+
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~---------~~~~~~~~~~~~~~~~~--~~~vg~tlQa----YL~~t~~~l~~ 156 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQ---------DAILDLFLELMRKYNKG--WPNVGITLQA----YLKRTPDDLER 156 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGH---------HHHHHHHHHHCCHHGTT----SEEEEEET----TBTTHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccch---------HHHHHHHHHHhhHhhCC--CCeEEEEEec----hhhchHHHHHH
Confidence 4677888899999998 5665444433 333332222 12211 3566766666 33 34566666
Q ss_pred HHHHHHHHhCCCceeEEEe------CC--------C-----CC----hHHHHHHHHHHHHcCC-c--CEEeecCCCHHHH
Q 017861 150 ALKDSLFRLGLSSVELYQL------AG--------I-----WG----NEGFIDGLGDAVEQGL-V--KAVGVSNYSEKRL 203 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l------~~--------~-----~~----~~~~~~~l~~l~~~G~-i--r~iGvS~~~~~~l 203 (365)
.++.+-+ .|. .+-+=++ +. . +. .+.....+..+..++. - -+++|.+|+...+
T Consensus 157 l~~~a~~-~g~-~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si 234 (313)
T PF01619_consen 157 LLELARR-RGF-RLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSI 234 (313)
T ss_dssp HHHHHHH-TTS--EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHH
T ss_pred HHHHHHH-cCC-eEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHH
Confidence 6655543 232 2444444 10 0 11 2334555666555554 3 5899999999999
Q ss_pred HHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccc
Q 017861 204 RNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 204 ~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~ 254 (365)
..+.+.+...++++.--++.|-.+.-=.. ++-....+.|..|.-|.|+|
T Consensus 235 ~~a~~l~~~~~~~~~~~~~efq~L~Gm~d--~l~~~L~~~g~~v~~YvP~G 283 (313)
T PF01619_consen 235 ALALELAEELGIPPNDDRVEFQQLYGMAD--DLSRALAQAGYRVRKYVPYG 283 (313)
T ss_dssp HHHHHHHHCTT-GG--GGEEEEEETTSSH--HHHHHHHHHTSEEEEEEEES
T ss_pred HHHHHHHHHcCCCcccccEEeehhccCCH--HHHHHHHhCCCCEEEEEecC
Confidence 99999888877554112222222221111 37777888999999999998
No 213
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=28.93 E-value=3.4e+02 Score=26.22 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCc----
Q 017861 141 RLGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP---- 216 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~---- 216 (365)
..+.+.++.-+.+.|.+.|++ ++..+.+-+..-.+ ...|+.+|....+...++..+.-++.
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~-------------ee~A~~vA~~lv~a--d~~G~~SHGv~r~p~yi~~l~~G~i~~~a~ 69 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVP-------------EEDARAVADVLVAA--DLRGVDSHGVGRLPGYVRRLKAGKINPDAE 69 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCC-------------HHHHHHHHHHHHHH--HhcCCcccchHHHHHHHHHHHcCCcCCCCc
Confidence 467899999999999999963 22222222222222 24578888888888887776654332
Q ss_pred eeeeeeeccc--ccCCc-------c--cccHHHHHHHhCCeEEE
Q 017861 217 LASNQVNYSL--IYRKP-------E--ENGVKAACDELGITLIA 249 (365)
Q Consensus 217 ~~~~q~~~n~--~~~~~-------~--~~~~~~~~~~~gi~v~a 249 (365)
+.+++..=.. +|-+. . -...++.|+++||++++
T Consensus 70 ~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 70 PEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred eEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 3333221111 11100 0 01378888999998875
No 214
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.86 E-value=5.2e+02 Score=28.11 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEeCCCC-ChHHHHHHHHHHHHc--CCcCEEeecCCCHHHHHHHHHHHHhcCCcee
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQLAGIW-GNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 218 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~-~~~~~~~~l~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 218 (365)
...+.+++-++...........-+|+|.+.. -..+.+++|.+..++ ..+++|-++|.....+..+.+.
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR--------- 169 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR--------- 169 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh---------
Confidence 3456666666654433322345677774321 234567777777777 5899999999765444444443
Q ss_pred eeeeecccccCCcccccHHHHHHHhCCe
Q 017861 219 SNQVNYSLIYRKPEENGVKAACDELGIT 246 (365)
Q Consensus 219 ~~q~~~n~~~~~~~~~~~~~~~~~~gi~ 246 (365)
+.++.|..+.......-+...|++.||.
T Consensus 170 Cq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 170 CLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred eEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 2445555554332111133444544543
No 215
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=28.78 E-value=4.1e+02 Score=23.44 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=17.5
Q ss_pred HHHhcCCCcEEeecCCCHHHHHHHHhh
Q 017861 308 NWLLAQDNVVPIPGAKNAEQAAEFAGA 334 (365)
Q Consensus 308 ~~~l~~~~v~~i~g~~~~~~l~en~~a 334 (365)
++....+ +.+++|+.+++++.+..+.
T Consensus 98 ~~~~~~~-~~~~~G~~t~~E~~~A~~~ 123 (206)
T PRK09140 98 RRAVALG-MVVMPGVATPTEAFAALRA 123 (206)
T ss_pred HHHHHCC-CcEEcccCCHHHHHHHHHc
Confidence 3344444 6788888888888777654
No 216
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=28.67 E-value=4.5e+02 Score=25.18 Aligned_cols=85 Identities=15% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEeCCC------CChHHHHHHHHHHHHcCC-cCEEeecCC------CHHHHHHHHH
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQLAGI------WGNEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYE 208 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~------~~~~~~~~~l~~l~~~G~-ir~iGvS~~------~~~~l~~~~~ 208 (365)
..+|.|+.+++...+. |-=-.|++.+. ..-..++.-+++|+++|. |..||+-+| +.+....+..
T Consensus 168 ~gpd~I~~aF~~Area---dP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~ 244 (345)
T COG3693 168 TGPDYIKLAFHIAREA---DPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALL 244 (345)
T ss_pred CccHHHHHHHHHHHhh---CCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHH
Confidence 3578888888877762 22122333221 124568889999999999 999998765 3455555555
Q ss_pred HHHhcCCceeeeeeecccccC
Q 017861 209 KLKKRGIPLASNQVNYSLIYR 229 (365)
Q Consensus 209 ~~~~~~~~~~~~q~~~n~~~~ 229 (365)
...+.|.++.+-++..+...+
T Consensus 245 ~~~k~Gl~i~VTELD~~~~~P 265 (345)
T COG3693 245 KFSKLGLPIYVTELDMSDYTP 265 (345)
T ss_pred HHhhcCCCceEEEeeeeccCC
Confidence 555567888888887777543
No 217
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=28.64 E-value=5.1e+02 Score=24.53 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=64.2
Q ss_pred HHHHhCCCceeEEEe---CC--CCChHHHHHHHHHHHHcCCcC-EEeecCC---CHHHHHHHHHHHHhcCCceeeeeeec
Q 017861 154 SLFRLGLSSVELYQL---AG--IWGNEGFIDGLGDAVEQGLVK-AVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNY 224 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l---~~--~~~~~~~~~~l~~l~~~G~ir-~iGvS~~---~~~~l~~~~~~~~~~~~~~~~~q~~~ 224 (365)
-.++.|.|-+-+-++ |- ..+..+..+.||++.+.=+|- -||=|+. +++.++++.+.+.-. ++-..-...
T Consensus 159 ~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGe--RclLaSanl 236 (403)
T COG2069 159 CVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGE--RCLLASANL 236 (403)
T ss_pred HHHHhCCceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCc--eEEeecccc
Confidence 456788776666666 21 245789999999998887776 5777775 567888888876522 222222222
Q ss_pred ccccCCcccccHHHHHHHhCCeEEEeccccc
Q 017861 225 SLIYRKPEENGVKAACDELGITLIAYCPIAQ 255 (365)
Q Consensus 225 n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~ 255 (365)
++ +.+ .+.+.+.++|-.|++|+++.-
T Consensus 237 dl---Dy~--~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 237 DL---DYE--RIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cc---CHH--HHHHHHHhcCceEEEeeccCh
Confidence 22 222 389999999999999988763
No 218
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=28.45 E-value=4.7e+02 Score=24.07 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEeCC-C---CC---hHHHHHHHHHHHHcCCcCEEeecCCC
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQLAG-I---WG---NEGFIDGLGDAVEQGLVKAVGVSNYS 199 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l~~-~---~~---~~~~~~~l~~l~~~G~ir~iGvS~~~ 199 (365)
.+.+++-+.+.++.++ +++..|=+.- . .. ..++.+.++.+++.|..-..=+--++
T Consensus 36 ~~~~~~f~~~ii~~l~-~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~D 97 (261)
T TIGR02127 36 AAGLQAFCLRIIDATA-EYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGD 97 (261)
T ss_pred HHHHHHHHHHHHHhcC-CcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccC
Confidence 3445566677777777 6776654410 0 11 23344445566666754433333343
No 219
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=28.35 E-value=2.3e+02 Score=29.84 Aligned_cols=110 Identities=12% Similarity=0.250 Sum_probs=66.1
Q ss_pred cCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcc--cccHHHHHHHhCCeEEEecccccccccCCCCC
Q 017861 187 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE--ENGVKAACDELGITLIAYCPIAQGALTGKYTP 264 (365)
Q Consensus 187 ~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~ 264 (365)
..++-.+-=++.+.+.+..+.+.++.....+.+ +|-++.... +..+.+.+++.++-++. +|.=+
T Consensus 153 ~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~----~~tiC~at~~Rq~a~~~la~~~d~~~vv-----Gg~~S----- 218 (647)
T PRK00087 153 DKKICVVSQTTEKQENFEKVLKELKKKGKEVKV----FNTICNATEVRQEAAEKLAKKVDVMIVV-----GGKNS----- 218 (647)
T ss_pred CCCEEEEEcCCCcHHHHHHHHHHHHHhCCCccc----CCCcchhhhhHHHHHHHHHhhCCEEEEE-----CCCCC-----
Confidence 344555555566777777777766543222222 233332211 12477777776766665 23110
Q ss_pred CCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcC------CCHHHHHHHHHhcCCCcEEeecCCCHHHHHHH
Q 017861 265 QNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS------KTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEF 331 (365)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~------~s~~qlal~~~l~~~~v~~i~g~~~~~~l~en 331 (365)
.+ ..+|.++|++.+ -++.++.-.|+-....|.+..|+++|+.+-+.
T Consensus 219 --------------sN-------t~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 219 --------------SN-------TTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred --------------cc-------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 00 127888888776 37889988998877766899999999976444
No 220
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.10 E-value=1.8e+02 Score=23.80 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=53.6
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHH
Q 017861 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 206 (365)
Q Consensus 127 ~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 206 (365)
+++.|+--... .+.+.+.....++.+++++++..+|..-.-....+.++=+...+.++.++=.-|+..++..+++++-
T Consensus 34 ~e~LiVrGmsR--ed~d~Dd~~~el~s~ie~~~v~~ld~es~Eg~elI~e~De~vr~~vei~te~~i~~d~~GfeRlKes 111 (156)
T COG4077 34 DEMLIVRGMSR--EDMDADDEEVELYSSIEDYLVKKLDKESFEGVELIKEIDEFVRRIVEILTENPIYPDTFGFERLKES 111 (156)
T ss_pred cceEEEecccc--cccCcchHHHHHHHHHHHhhHHHhCccCHHHHHHHHHHHHHHHHHHHhhhcCCCccCcchHHHHHHH
Confidence 44554443333 5677888999999999999999988654421112233333344555666666788888888888887
Q ss_pred HHH
Q 017861 207 YEK 209 (365)
Q Consensus 207 ~~~ 209 (365)
++.
T Consensus 112 lE~ 114 (156)
T COG4077 112 LEM 114 (156)
T ss_pred HHH
Confidence 765
No 221
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=28.09 E-value=4.9e+02 Score=24.10 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 017861 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (365)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (365)
.++.++..++++.+.+.|+..|.- .| |+..=...-.+++. .+++.. -.++.|.|-. .- + ..
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~---tG-GEPll~~~l~~iv~-~l~~~g----~~~v~i~TNG----~l-----l-~~ 99 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKI---TG-GEPLLRKDLIEIIR-RIKDYG----IKDVSMTTNG----IL-----L-EK 99 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE---EC-cccccccCHHHHHH-HHHhCC----CceEEEEcCc----hH-----H-HH
Confidence 467788899999999999987753 23 42211111123332 233322 1367777764 11 1 12
Q ss_pred HHHHHHHhCCCceeEEEeCCC-----------CChHHHHHHHHHHHHcCCc--C--EEeecCCCHHHHHHHHHHHHhcCC
Q 017861 151 LKDSLFRLGLSSVELYQLAGI-----------WGNEGFIDGLGDAVEQGLV--K--AVGVSNYSEKRLRNAYEKLKKRGI 215 (365)
Q Consensus 151 l~~SL~~Lg~d~iDl~~l~~~-----------~~~~~~~~~l~~l~~~G~i--r--~iGvS~~~~~~l~~~~~~~~~~~~ 215 (365)
.-..|.+.|.+.|-+ -++.. ...+.+++.++.+++.|.. + .+.+.+.+.+++..+++.+...++
T Consensus 100 ~~~~l~~~g~~~v~i-Sld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~ 178 (302)
T TIGR02668 100 LAKKLKEAGLDRVNV-SLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGA 178 (302)
T ss_pred HHHHHHHCCCCEEEE-EecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 233466667654431 12111 2367888999999988842 2 344444677788888887776655
Q ss_pred c
Q 017861 216 P 216 (365)
Q Consensus 216 ~ 216 (365)
.
T Consensus 179 ~ 179 (302)
T TIGR02668 179 I 179 (302)
T ss_pred E
Confidence 4
No 222
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=27.96 E-value=5.4e+02 Score=24.58 Aligned_cols=177 Identities=16% Similarity=0.152 Sum_probs=93.2
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCC
Q 017861 64 WNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLG 143 (365)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~ 143 (365)
||..+....++.++.+ |...++..=--++.|--|+.... |+.+.+-.+.-. +++++.-=.... ...+
T Consensus 66 gg~sPL~~~T~~q~~~-L~~~L~~~~~~V~~amry~~P~i------~~~v~~l~~~gv-----~~iv~~pLyPqy-S~sT 132 (320)
T COG0276 66 GGKSPLNVITRAQAAA-LEERLDLPDFKVYLAMRYGPPFI------EEAVEELKKDGV-----ERIVVLPLYPQY-SSST 132 (320)
T ss_pred cCCCccHHHHHHHHHH-HHHHhCCCCccEEEeecCCCCcH------HHHHHHHHHcCC-----CeEEEEECCccc-cccc
Confidence 3333444556666544 44444422223455666777655 888776444332 566665554321 2344
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCc------CEEeecCCCH------------HHHHH
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLV------KAVGVSNYSE------------KRLRN 205 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~i------r~iGvS~~~~------------~~l~~ 205 (365)
.....+.+.+.|++++ ..+.+-.+++..+.+..++++.+.+++..- ..+=+|.|+. .++++
T Consensus 133 t~s~~~~~~~al~~~~-~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~~~~~~~llfSaHglP~~~~~~GDpY~~q~~~ 211 (320)
T COG0276 133 TGSYVDELARALKELR-GQPKISTIPDYYDEPLYIEALADSIREKLAKHPRDDDVLLFSAHGLPKRYIDEGDPYPQQCQE 211 (320)
T ss_pred HHHHHHHHHHHHHhcC-CCCceEEecCccCChHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCchhhhhcCCchHHHHHH
Confidence 5567777888888888 447778886665666666665554433211 2355666653 23333
Q ss_pred HHHH-HHhcCCc----eeeeeeecccccC-CcccccHHHHHHHhCCeEEEecccc
Q 017861 206 AYEK-LKKRGIP----LASNQVNYSLIYR-KPEENGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 206 ~~~~-~~~~~~~----~~~~q~~~n~~~~-~~~~~~~~~~~~~~gi~v~a~~~l~ 254 (365)
..+. +...|.+ ....|-.+-+.-. .+...+.++...++|+.-+..-|.+
T Consensus 212 t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pig 266 (320)
T COG0276 212 TTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIG 266 (320)
T ss_pred HHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCc
Confidence 2222 2223321 2233444333110 1112257777777888877777776
No 223
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=27.94 E-value=4.4e+02 Score=25.81 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=0.0
Q ss_pred cccceecccc--------cCCCCCCCCCCCchhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHh
Q 017861 48 VTKLGVGAWS--------WGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE 119 (365)
Q Consensus 48 vs~lglGt~~--------~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~ 119 (365)
|.+|.+|.-+ ++.. .+.+++.+.++.+.+.|+..+-.-=.||-
T Consensus 126 vnrislGvQS~~d~~L~~l~R~----------~~~~~~~~ai~~l~~~G~~~v~~dlI~Gl------------------- 176 (400)
T PRK07379 126 VNRVSLGVQAFQDELLALCGRS----------HRVKDIFAAVDLIHQAGIENFSLDLISGL------------------- 176 (400)
T ss_pred CCEEEEEcccCCHHHHHHhCCC----------CCHHHHHHHHHHHHHcCCCeEEEEeecCC-------------------
Q ss_pred ccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEe-------------------CCCCChHHHHHH
Q 017861 120 RKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQL-------------------AGIWGNEGFIDG 180 (365)
Q Consensus 120 ~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l-------------------~~~~~~~~~~~~ 180 (365)
...+.+.+++.++..++ |+.++|-++.+ |+.....+.++.
T Consensus 177 --------------------Pgqt~e~~~~tl~~~~~-l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~ 235 (400)
T PRK07379 177 --------------------PHQTLEDWQASLEAAIA-LNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRL 235 (400)
T ss_pred --------------------CCCCHHHHHHHHHHHHc-CCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHH
Q ss_pred HHHHHHcCCcCEEeecCC
Q 017861 181 LGDAVEQGLVKAVGVSNY 198 (365)
Q Consensus 181 l~~l~~~G~ir~iGvS~~ 198 (365)
..+.-++.--.++++|||
T Consensus 236 ~~~~L~~~Gy~~yeisnf 253 (400)
T PRK07379 236 AQEILTQAGYEHYEISNY 253 (400)
T ss_pred HHHHHHHcCCceeeeehe
No 224
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.77 E-value=5.6e+02 Score=24.71 Aligned_cols=105 Identities=14% Similarity=0.026 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCCceeEEEeC-CCCChHHHHHHHHHHHHc-CC---cCEEeec--CCCHHHHHHHHHHHHhcCCceeeeee
Q 017861 150 ALKDSLFRLGLSSVELYQLA-GIWGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQV 222 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l~-~~~~~~~~~~~l~~l~~~-G~---ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~ 222 (365)
.|--||..-.-+.-+-++-| ..++.+++.+++.++.+. |+ +-++=+. |.+.++++++.+.++ +.++.++-+
T Consensus 200 ~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~--~~~~~vNLI 277 (344)
T PRK14464 200 ALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLK--GKYAVMNLI 277 (344)
T ss_pred HHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHh--cccccccee
Confidence 34445555543333333332 346788999998887654 42 1233232 567888888877754 346788999
Q ss_pred ecccccCCccc-------ccHHHHHHHhCCeEEEecccccc
Q 017861 223 NYSLIYRKPEE-------NGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 223 ~~n~~~~~~~~-------~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
+||+....... ..+.+..+++||.+..+...|..
T Consensus 278 PyN~v~g~~~~rp~~~~i~~f~~~L~~~gi~~tiR~~~G~d 318 (344)
T PRK14464 278 PYNSVDGDAYRRPSGERIVAMARYLHRRGVLTKVRNSAGQD 318 (344)
T ss_pred cCCccCCCCccCCCHHHHHHHHHHHHHCCceEEEECCCCCc
Confidence 99986532211 14677778899999999888754
No 225
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.52 E-value=3.2e+02 Score=25.28 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=20.6
Q ss_pred CHHHHHHHHhhhCC--CCCHHHHHHHHHhhhccCCC
Q 017861 324 NAEQAAEFAGALGW--RLTDEEVNELRSMASEIKPV 357 (365)
Q Consensus 324 ~~~~l~en~~a~~~--~L~~e~~~~l~~~~~~~~~~ 357 (365)
..+++-.++..... .++-+.+..+.+..+.++..
T Consensus 236 ~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~~~ 271 (275)
T cd07937 236 STESMVAALRGTGRDTGLDLEKLEEISEYFEEVRKK 271 (275)
T ss_pred hHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45555555555433 56677777777766665543
No 226
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=27.33 E-value=3.4e+02 Score=25.01 Aligned_cols=84 Identities=18% Similarity=0.111 Sum_probs=0.0
Q ss_pred hHHHH-HHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 017861 72 RKMKA-AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (365)
Q Consensus 72 ~~~~~-~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (365)
+++++ ..++.+.|.+.|..|+=|+.-|+.+.+ +...-+++-+.+++.. ..--+--|... --.+.+....-
T Consensus 143 L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gA--t~edv~lm~~~i~~~~-----~~~~vgIKAsG--GIrt~~~A~~~ 213 (257)
T PRK05283 143 LKDEALIRKASEIAIKAGADFIKTSTGKVPVNA--TLEAARIMLEVIRDMG-----VAKTVGFKPAG--GVRTAEDAAQY 213 (257)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC--CHHHHHHHHHHHHhcc-----cCCCeeEEccC--CCCCHHHHHHH
Q ss_pred HHHHHHHhCCCcee
Q 017861 151 LKDSLFRLGLSSVE 164 (365)
Q Consensus 151 l~~SL~~Lg~d~iD 164 (365)
++.--+.||.+|++
T Consensus 214 i~ag~~~lg~~~~~ 227 (257)
T PRK05283 214 LALADEILGADWAD 227 (257)
T ss_pred HHHHHHHhChhhcC
No 227
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=26.86 E-value=3e+02 Score=27.15 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=23.8
Q ss_pred CceeeeeeecccccCCcccccHHHHHHHhCCeEEEeccccccccc
Q 017861 215 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALT 259 (365)
Q Consensus 215 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~ 259 (365)
.+..+++.+-||+..-..-..+.+.|+++|+-++.=..++.+++.
T Consensus 150 tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q 194 (396)
T COG0626 150 TKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQ 194 (396)
T ss_pred ceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccccc
Confidence 345555555555554333334555666666555555555555443
No 228
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.72 E-value=3.2e+02 Score=26.61 Aligned_cols=73 Identities=10% Similarity=0.004 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHc------CCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEE
Q 017861 176 GFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 249 (365)
Q Consensus 176 ~~~~~l~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a 249 (365)
+-++.+.+|.+. +.=-..|=+.++.+.+.++++. --.+++|+..+-.--=.+...+.+.|+.+||.++.
T Consensus 243 ~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-----~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~ 317 (369)
T cd03314 243 AQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-----GAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYL 317 (369)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-----CCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEE
Confidence 346777777766 3333566666788888888665 34788888766432111222489999999999998
Q ss_pred eccc
Q 017861 250 YCPI 253 (365)
Q Consensus 250 ~~~l 253 (365)
.+..
T Consensus 318 h~~~ 321 (369)
T cd03314 318 GGSC 321 (369)
T ss_pred eCCC
Confidence 7543
No 229
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=26.62 E-value=2.8e+02 Score=24.32 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEE-EEecCCC---CCCCCCHHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVT-VATKFAA---LPWRLGRQSVLA 149 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~-I~tK~~~---~~~~~~~~~i~~ 149 (365)
-+++.+.+..++..|-+.| .+|+|.| +..+..+-.+++++....++.-..+ +.+-... ...+.. ...
T Consensus 27 i~~a~~~l~~~l~~~~rI~----~~G~GgS--a~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~---~~~ 97 (196)
T PRK10886 27 ISRAAMTLVQSLLNGNKIL----CCGNGTS--AANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRL---HDE 97 (196)
T ss_pred HHHHHHHHHHHHHcCCEEE----EEECcHH--HHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhcccc---HHH
Confidence 4677888888889998888 7999865 1112222222222111000000111 1100000 001122 234
Q ss_pred HHHHHHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHH
Q 017861 150 ALKDSLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 206 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 206 (365)
-+.+.|+.+.. .=|++++ ...-....+.++++.+|+.| ++-|++++++...+.++
T Consensus 98 ~f~~ql~~~~~-~gDvli~iS~SG~s~~v~~a~~~Ak~~G-~~vI~IT~~~~s~l~~l 153 (196)
T PRK10886 98 VYAKQVRALGH-AGDVLLAISTRGNSRDIVKAVEAAVTRD-MTIVALTGYDGGELAGL 153 (196)
T ss_pred HHHHHHHHcCC-CCCEEEEEeCCCCCHHHHHHHHHHHHCC-CEEEEEeCCCCChhhhc
Confidence 45566666664 3487777 22224778999999999997 56799999877776665
No 230
>PLN02224 methionine-tRNA ligase
Probab=26.60 E-value=3.4e+02 Score=28.49 Aligned_cols=100 Identities=9% Similarity=0.026 Sum_probs=57.9
Q ss_pred HCCCCeeecccccCCCCC-CCCCch---HHHHHHHHHhccCCCCCCcEEEEecCCCCC---------CCCCH----HHHH
Q 017861 86 DNGITFFDTAEVYGSRAS-FGAINS---ETLLGRFIKERKQRDPEVEVTVATKFAALP---------WRLGR----QSVL 148 (365)
Q Consensus 86 ~~Gin~~DTA~~Yg~g~s-~~~~~s---E~~lG~al~~~~~~~~R~~~~I~tK~~~~~---------~~~~~----~~i~ 148 (365)
+.+.-+|.|+.-|-+|.. .|+..+ -.++.++++-.. .+++..+=+-.+. ...++ +.+.
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G-----~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~ 141 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLG-----KKVIFITGTDEHGEKIATSAAANGRNPPEHCDIIS 141 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcC-----CceEEecCcCCcchHHHHHHHHcCCChHHHHHHHH
Confidence 344458999999998865 355532 233344443332 3555554432110 01222 2344
Q ss_pred HHHHHHHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHcCCcC
Q 017861 149 AALKDSLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQGLVK 191 (365)
Q Consensus 149 ~~l~~SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~G~ir 191 (365)
..+.+.+++|++++ |.+.- .+..-.+.+.+.+.+|.++|.|-
T Consensus 142 ~~~~~~~~~l~I~~-D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy 184 (616)
T PLN02224 142 QSYRTLWKDLDIAY-DKFIRTTDPKHEAIVKEFYARVFANGDIY 184 (616)
T ss_pred HHHHHHHHHcCCCC-CcCeeCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 66678999999965 75544 22222567888899999999884
No 231
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=26.58 E-value=5.8e+02 Score=24.46 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHcC
Q 017861 141 RLGRQSVLAALKDSLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQG 188 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~G 188 (365)
..+.+.|.+.++. ....|...+.+..- +...+.+.+.+.++.+++..
T Consensus 78 ~l~~eeI~~~a~~-~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~ 125 (351)
T TIGR03700 78 AMSLEEIVARVKE-AYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAY 125 (351)
T ss_pred CCCHHHHHHHHHH-HHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHC
Confidence 3578888887775 45688888887754 21245678888888888875
No 232
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=26.53 E-value=2.4e+02 Score=23.92 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
-+++...-.+++|-+.||.+|=.|..||.- -..+-+.+.+. =+++++|.-... ..-+.-.+...+
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~t--------A~k~lemveg~------lkvVvVthh~Gf-~e~g~~e~~~E~ 75 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGYT--------ALKALEMVEGD------LKVVVVTHHAGF-EEKGTQEMDEEV 75 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccHH--------HHHHHHhcccC------ceEEEEEeeccc-ccCCceecCHHH
Confidence 355667777888899999999999999951 22222222221 246666653221 122334466778
Q ss_pred HHHHHHhCCC
Q 017861 152 KDSLFRLGLS 161 (365)
Q Consensus 152 ~~SL~~Lg~d 161 (365)
++-|+..|.+
T Consensus 76 ~~~L~erGa~ 85 (186)
T COG1751 76 RKELKERGAK 85 (186)
T ss_pred HHHHHHcCce
Confidence 8889999864
No 233
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=26.32 E-value=4.1e+02 Score=28.71 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=59.2
Q ss_pred CceeEEEe-CCCCChHHHHHHHH--HHHHcCCcCEEeecCCCHHHHHHH------------HHHHHhcCCceeeeeeecc
Q 017861 161 SSVELYQL-AGIWGNEGFIDGLG--DAVEQGLVKAVGVSNYSEKRLRNA------------YEKLKKRGIPLASNQVNYS 225 (365)
Q Consensus 161 d~iDl~~l-~~~~~~~~~~~~l~--~l~~~G~ir~iGvS~~~~~~l~~~------------~~~~~~~~~~~~~~q~~~n 225 (365)
||+-++.. |++...+.++++++ +|.++ |.-+|++.-..+.+ +. .+.+-..| -++++-+.++
T Consensus 232 ~~vnI~vhGHnp~l~~~iv~~~~~~~l~~~--I~l~GiCCTg~e~~-R~~~gv~~~Gn~~~qe~~i~TG-avD~~VvD~Q 307 (784)
T TIGR00314 232 SKPVILVIGHNVMPGRPIADYLEENGMEDE--VELCGICCTAIDMT-RYNAKAKIVGPLSRQLRVIRAG-VADVIIVDEQ 307 (784)
T ss_pred CCcEEEEECCCchHHHHHHHHHhChhHHHH--hceeeeeccccHHh-hhccCCcccCcHHHHHHHHHcC-CCcEEEEecc
Confidence 66666666 77666788888888 66666 88888887665533 22 01111122 2566556655
Q ss_pred cccCCcccccHHHHHHHhCCeEEEeccccccccc
Q 017861 226 LIYRKPEENGVKAACDELGITLIAYCPIAQGALT 259 (365)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~ 259 (365)
=..+ ++.+.|+..++.+|+.++.+.--|-
T Consensus 308 Ci~p-----~l~~~a~c~~tklItTs~ka~~gl~ 336 (784)
T TIGR00314 308 CIRA-----DILEECKKMGIPLIATNDKACLGLP 336 (784)
T ss_pred cCcc-----cHHHHHHhcCCeEEEcchHHhcCCC
Confidence 4443 4899999999999999998865443
No 234
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=26.27 E-value=4.4e+02 Score=23.44 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHCCCCeeecccccCCC-CCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSR-ASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g-~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
++++.....+.+.+.|..|+=|+.-|+.+ -+ ...-+.+-+.++ ++ +-.|.... -.+.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat---~~dv~~m~~~v~--------~~--v~IKaaGG--irt~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGAT---VEDVRLMRNTVG--------DT--IGVKASGG--VRTAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCC---HHHHHHHHHHhc--------cC--CeEEEeCC--CCCHHHHHHHH
Confidence 34667788899999999999999888743 22 000123333332 22 23343221 13678888888
Q ss_pred HHHHHHhCCCc
Q 017861 152 KDSLFRLGLSS 162 (365)
Q Consensus 152 ~~SL~~Lg~d~ 162 (365)
+.--.|+|+++
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 88889999864
No 235
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=26.20 E-value=2.9e+02 Score=25.89 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=58.7
Q ss_pred HHHhCCCceeEEEeCC--C-CChHHHH-----HHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeeccc
Q 017861 155 LFRLGLSSVELYQLAG--I-WGNEGFI-----DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL 226 (365)
Q Consensus 155 L~~Lg~d~iDl~~l~~--~-~~~~~~~-----~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 226 (365)
++-++-.++|+..+.. . ....+.. +.+.+..++--=|++|+.+.++..-+.+..-.++.--..-++++..++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p 134 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHP 134 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecc
Confidence 7778888889888851 1 1122222 467777777777999999887653222222222211123344444443
Q ss_pred ccCCc----cc-ccHHHHHHHhCCeEEEecccccc
Q 017861 227 IYRKP----EE-NGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 227 ~~~~~----~~-~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
..+.. .. ..++++|+++|+.|+-+.....+
T Consensus 135 ~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 135 VAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred cccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 33221 11 25999999999999886554433
No 236
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=26.20 E-value=3.5e+02 Score=23.51 Aligned_cols=114 Identities=16% Similarity=0.215 Sum_probs=69.1
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEe-CC--C-CChHHHHHHHHHHHHcCCcCEEeecCCC--HH
Q 017861 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQL-AG--I-WGNEGFIDGLGDAVEQGLVKAVGVSNYS--EK 201 (365)
Q Consensus 128 ~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l-~~--~-~~~~~~~~~l~~l~~~G~ir~iGvS~~~--~~ 201 (365)
...+.-.+.. .....+.....+.+.|+..+...-.+++- +. . .....+.+.+..+++.| -.+++.++. ..
T Consensus 83 ~~~l~ini~~--~~l~~~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G--~~l~ld~~g~~~~ 158 (240)
T cd01948 83 DLRLSVNLSA--RQLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALG--VRIALDDFGTGYS 158 (240)
T ss_pred CeEEEEECCH--HHhCCcHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCC--CeEEEeCCCCcHh
Confidence 3444444432 22334456677888888888764233333 22 1 23456889999999999 557887764 33
Q ss_pred HHHHHHHHHHhcCCceeeeeeecccccCCcc-------cccHHHHHHHhCCeEEEec
Q 017861 202 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAYC 251 (365)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-------~~~~~~~~~~~gi~v~a~~ 251 (365)
.++.+.. .+|+++-+..+.+..-.. -..++..|+..|+.+++-+
T Consensus 159 ~~~~l~~------~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 159 SLSYLKR------LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred hHHHHHh------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 4444433 357777776655443211 1248899999999999853
No 237
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=26.18 E-value=4.1e+02 Score=26.23 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcC--CcCEEeec--CCCHHHHHHHHHHHHhcCCce
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQG--LVKAVGVS--NYSEKRLRNAYEKLKKRGIPL 217 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G--~ir~iGvS--~~~~~~l~~~~~~~~~~~~~~ 217 (365)
++++...+-+.+.++.+ +++++-++.+ ++-|+.+.+|.+.- .+.-.|=- .++++.+.++++. .-.
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~-~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~-----~a~ 329 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFD-EDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEK-----KAA 329 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCC-CcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHh-----CCC
Confidence 34455544444444443 4667723222 22266677777663 44433321 2468888888765 347
Q ss_pred eeeeeecccccCCcccccHHHHHHHhCCeEEE
Q 017861 218 ASNQVNYSLIYRKPEENGVKAACDELGITLIA 249 (365)
Q Consensus 218 ~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a 249 (365)
+++|+..|-+-.=.+..++...|+++|+.++.
T Consensus 330 d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 330 NALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred CEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 77777766433211223588999999999875
No 238
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=26.12 E-value=3.3e+02 Score=27.43 Aligned_cols=48 Identities=15% Similarity=0.051 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEeC-CCCChHHHHHHHHHHHHcCCcCE
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQLA-GIWGNEGFIDGLGDAVEQGLVKA 192 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l~-~~~~~~~~~~~l~~l~~~G~ir~ 192 (365)
.+...+.+++.|++||++ .|.+.-+ +..-.+.+.+.+++|+++|.|-.
T Consensus 69 ~~~~~~~~~~~l~~l~I~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~ 117 (511)
T PRK11893 69 ADRNSAAFKRLWEALNIS-YDDFIRTTDPRHKEAVQEIFQRLLANGDIYL 117 (511)
T ss_pred HHHHHHHHHHHHHHhCCC-cCCceeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 455778889999999997 6755432 21236788999999999998653
No 239
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=25.90 E-value=5.3e+02 Score=23.75 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 017861 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (365)
Q Consensus 78 ~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~ 157 (365)
.+.++.|++.|=-.|=.+.+||+ =++++.++.... ..+.+..+- .....+.+-+.+..++
T Consensus 110 ~e~l~~a~~~g~gvIl~t~H~Gn---------wE~~~~~l~~~~-----~~~~~i~~~------~~n~~~~~~~~~~R~~ 169 (295)
T PF03279_consen 110 EEHLEAALAEGRGVILLTGHFGN---------WELAGRALARRG-----PPVAVIYRP------QKNPYIDRLLNKLRER 169 (295)
T ss_pred HHHHHHHHhcCCCCEEeCcCcCh---------HHHHHHHHHhhC-----CceEEEecC------CccHhHHHHHHHHHHh
Confidence 35667777777677777888887 456777776653 345444443 1234455556666666
Q ss_pred hCCC
Q 017861 158 LGLS 161 (365)
Q Consensus 158 Lg~d 161 (365)
.|.+
T Consensus 170 ~g~~ 173 (295)
T PF03279_consen 170 FGIE 173 (295)
T ss_pred cCCe
Confidence 6643
No 240
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.89 E-value=5e+02 Score=23.51 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=47.5
Q ss_pred HHHHhCCCceeEEEeC--C-----CCChHHHHHHHHHHHHcCC-cCEEeecCC--------CH-------HHHHHHHHHH
Q 017861 154 SLFRLGLSSVELYQLA--G-----IWGNEGFIDGLGDAVEQGL-VKAVGVSNY--------SE-------KRLRNAYEKL 210 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~--~-----~~~~~~~~~~l~~l~~~G~-ir~iGvS~~--------~~-------~~l~~~~~~~ 210 (365)
..+++|.++|++..-+ . .++..+.-+..+.+.+.|. |-.++++++ .+ +.++++++.+
T Consensus 24 ~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a 103 (284)
T PRK13210 24 FAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLA 103 (284)
T ss_pred HHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3568999999986531 1 1223333334445566673 223433321 11 3456777777
Q ss_pred HhcCCceeeeeeecccc-cCCcc---------cccHHHHHHHhCCeEE
Q 017861 211 KKRGIPLASNQVNYSLI-YRKPE---------ENGVKAACDELGITLI 248 (365)
Q Consensus 211 ~~~~~~~~~~q~~~n~~-~~~~~---------~~~~~~~~~~~gi~v~ 248 (365)
...|.+...+. .+... .+..+ -.++.+.++++||.+.
T Consensus 104 ~~lG~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 150 (284)
T PRK13210 104 QDLGIRTIQLA-GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA 150 (284)
T ss_pred HHhCCCEEEEC-CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 77766543321 11111 11110 0247788889998654
No 241
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=25.86 E-value=5.6e+02 Score=24.10 Aligned_cols=169 Identities=13% Similarity=0.086 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHH----------HHhccCCCCCCcEEEEecCCCC-----
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF----------IKERKQRDPEVEVTVATKFAAL----- 138 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~a----------l~~~~~~~~R~~~~I~tK~~~~----- 138 (365)
++..+++-..+++.|-+.++|+..=-........-+++-+-+. .++.-. .+...|+.-+|+.
T Consensus 42 peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g---~~~~~iagsiGP~ga~~a 118 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTATYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYG---EENQNIAGSLGPYGAALA 118 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhc---ccccccceeccchhhhcC
Confidence 4777778888899999999987532221110000112222222 222111 3444566666652
Q ss_pred -----CCCCCHHHHHHHHHHHHHHhCCCceeEEEe---CCCCChHHHHHHHHHHHHcCCcCEEeecCCC------HHHHH
Q 017861 139 -----PWRLGRQSVLAALKDSLFRLGLSSVELYQL---AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLR 204 (365)
Q Consensus 139 -----~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l---~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~------~~~l~ 204 (365)
.+..+.+.+.+-.+.-++.|.-.-+|++.+ |+....+.+.+.++++ +|=-.|+++-.+ ..-+.
T Consensus 119 ~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~ 195 (300)
T COG2040 119 DEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLS 195 (300)
T ss_pred hhhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHH
Confidence 134456666666777778887777999998 6655566667766666 777789988652 23455
Q ss_pred HHHHHHHhcCCceeeeeeecccccCCcccccHHHHH--HHhCCeEEEecc
Q 017861 205 NAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC--DELGITLIAYCP 252 (365)
Q Consensus 205 ~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~--~~~gi~v~a~~~ 252 (365)
++....+.. ..+..+.++. ..++... .+++.. ...++++++|--
T Consensus 196 eaa~~~~~~-~~iaa~gvNC--~~p~~~~-a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 196 EAAAILAGL-PNIAALGVNC--CHPDHIP-AAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHHHHhcC-cchhheeecc--CChhhhH-HHHHHHHhcCCCCceEEcCC
Confidence 665554322 1244444433 3332222 255555 334888898855
No 242
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=25.78 E-value=2.4e+02 Score=28.34 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=41.0
Q ss_pred HHHhCCCceeEEEeCCC-CC-hHHHHHHHHHHHHcCCcCEEeec-CCCHHHHHHHHHHHHhcCCceeeeeeecc
Q 017861 155 LFRLGLSSVELYQLAGI-WG-NEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 225 (365)
Q Consensus 155 L~~Lg~d~iDl~~l~~~-~~-~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 225 (365)
...+|.|++=+.+.+.. .- ..+....+.+... ++.+||- |-+++.+.++.+. ..++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-----~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-----LSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-----cCCCEEEeCCC
Confidence 45688999999876422 11 2233333333222 8899987 6678888887665 46899999764
No 243
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=25.76 E-value=80 Score=26.79 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcE-EeecCCC---HHHHHHHHhhhCC-CCCHHHHHHHHHhhhccCCCCCC
Q 017861 286 PLLNRIKELGENYSKTSTQVGLNWLLAQDNVV-PIPGAKN---AEQAAEFAGALGW-RLTDEEVNELRSMASEIKPVVSF 360 (365)
Q Consensus 286 ~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v~-~i~g~~~---~~~l~en~~a~~~-~L~~e~~~~l~~~~~~~~~~~~~ 360 (365)
.+.+.+..+... .+..+ -+.-+..||.+. ...+... ..+-++ + .. .+++++...|.++.+.++.++||
T Consensus 37 ~L~~a~~~~~~~--~~~~~-~~~~l~~HP~lg~~~~~~~~~~~~S~~EQ---a-gl~~~~~~~~~~L~~lN~~Y~~kFGf 109 (158)
T TIGR03180 37 ALLAAADQAWQN--LSEQD-LFEALAGHPRIGEKPAGQAAYAATSRREQ---A-GVDGADEETRAALLEGNAAYEEKFGR 109 (158)
T ss_pred HHHHHHHHHHHc--CCHHH-HHHHHHhCCcccCccccccchhhhhHHHH---h-cccCCCHHHHHHHHHHHHHHHHHCCC
Confidence 334444444433 33333 456667788662 2222221 111122 1 33 79999999999999999999999
Q ss_pred CC
Q 017861 361 PL 362 (365)
Q Consensus 361 p~ 362 (365)
|+
T Consensus 110 pF 111 (158)
T TIGR03180 110 IF 111 (158)
T ss_pred eE
Confidence 96
No 244
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=25.71 E-value=5.7e+02 Score=24.44 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHHHHcCCcCEEeecCC--CHHHHHHHHHHHHhcCC
Q 017861 180 GLGDAVEQGLVKAVGVSNY--SEKRLRNAYEKLKKRGI 215 (365)
Q Consensus 180 ~l~~l~~~G~ir~iGvS~~--~~~~l~~~~~~~~~~~~ 215 (365)
.++.+.+.| |+.|-|..+ ..+.+.+.++.++..|.
T Consensus 92 dl~~a~~~g-vd~iri~~~~~e~d~~~~~i~~ak~~G~ 128 (333)
T TIGR03217 92 DLKAAYDAG-ARTVRVATHCTEADVSEQHIGMARELGM 128 (333)
T ss_pred HHHHHHHCC-CCEEEEEeccchHHHHHHHHHHHHHcCC
Confidence 345555554 455554443 33455566666666554
No 245
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=25.70 E-value=3.7e+02 Score=21.91 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=41.2
Q ss_pred CcEEEEecCCCCC----CCCCHHHHHHHHHHHHHHhC--CCceeEEEe----CCCCChHHHHHHHHHHHHcCC
Q 017861 127 VEVTVATKFAALP----WRLGRQSVLAALKDSLFRLG--LSSVELYQL----AGIWGNEGFIDGLGDAVEQGL 189 (365)
Q Consensus 127 ~~~~I~tK~~~~~----~~~~~~~i~~~l~~SL~~Lg--~d~iDl~~l----~~~~~~~~~~~~l~~l~~~G~ 189 (365)
..++++...-+.. .+.-...+.+..+..-++|+ .+.+.+.+. |..|--..+-++|++|.++|.
T Consensus 19 ~~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~ 91 (135)
T cd00419 19 DRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGV 91 (135)
T ss_pred CEEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 4556665543210 11226678888888889998 445566666 334556678889999999984
No 246
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=25.43 E-value=4.1e+02 Score=28.73 Aligned_cols=88 Identities=16% Similarity=0.074 Sum_probs=58.0
Q ss_pred CCceeEEEe-CCCCChHHHHHHHH--HHHHcCCcCEEeecCCCHHHHHHH------------HHHHHhcCCceeeeeeec
Q 017861 160 LSSVELYQL-AGIWGNEGFIDGLG--DAVEQGLVKAVGVSNYSEKRLRNA------------YEKLKKRGIPLASNQVNY 224 (365)
Q Consensus 160 ~d~iDl~~l-~~~~~~~~~~~~l~--~l~~~G~ir~iGvS~~~~~~l~~~------------~~~~~~~~~~~~~~q~~~ 224 (365)
.||+-++.. |++...+.++++++ +|.+ .|.-+|++.-..+.+ +. .+.+-..| -++++-+.+
T Consensus 235 ~~~vnI~vhGHnp~l~~~iv~~~~~~el~~--gI~~~GiCCTg~e~~-R~~~g~~~~Gn~~~qe~~i~TG-avD~~VvD~ 310 (781)
T PRK00941 235 KSKPVILVIGHNVAPGTYIIDYLEENGLTD--KVEVCGICCTAIDIT-RYSEKAKVVGPLSKQLKFIRSG-IPDVIVVDE 310 (781)
T ss_pred CCCcEEEEECCCchHHHHHHHHHhCcchhh--CceEEEEecccchHh-hhccCCcccCcHHHHHHHHHcC-CCcEEEEec
Confidence 367777777 77766788888877 6666 677788887655533 22 01111122 256666665
Q ss_pred ccccCCcccccHHHHHHHhCCeEEEecccccc
Q 017861 225 SLIYRKPEENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 225 n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
+=+.+ ++.+.|+..|.++|+.++-.+=
T Consensus 311 QCi~p-----~L~eiA~~ygt~lItTs~k~~~ 337 (781)
T PRK00941 311 QCVRT-----DILEEAKKLGIPVIATNDKICL 337 (781)
T ss_pred ccCcc-----cHHHHHHHhCCCEEEecccccc
Confidence 54443 4899999999999999887753
No 247
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=25.32 E-value=6.5e+02 Score=24.65 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCCc--EEeecCC
Q 017861 303 TQVGLNWLLAQDNV--VPIPGAK 323 (365)
Q Consensus 303 ~qlal~~~l~~~~v--~~i~g~~ 323 (365)
++....|+-++|.| +-.||..
T Consensus 267 a~~la~~L~~~p~v~~V~yP~l~ 289 (405)
T PRK08776 267 ADAIAALLDGHAAVNQVYYPGLA 289 (405)
T ss_pred HHHHHHHHHcCCCeeEEECCCCC
Confidence 34445677777766 3345543
No 248
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=25.32 E-value=91 Score=26.38 Aligned_cols=25 Identities=20% Similarity=0.503 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHhhhccCCCCCCCC
Q 017861 338 RLTDEEVNELRSMASEIKPVVSFPL 362 (365)
Q Consensus 338 ~L~~e~~~~l~~~~~~~~~~~~~p~ 362 (365)
.+|+++...|..+.+.++.++|||+
T Consensus 87 ~~~~~~~~~L~~lN~~Y~~kFGfpF 111 (157)
T TIGR03164 87 QLSQEEFARFTRLNNAYRARFGFPF 111 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCee
Confidence 7999999999999999999999996
No 249
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=25.29 E-value=68 Score=25.45 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCC
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGS 100 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~ 100 (365)
.+.+.+....+++.|++.||.+..|-.
T Consensus 76 ~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 76 HGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp HHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred hhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 467788888889999999999999843
No 250
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=25.25 E-value=6e+02 Score=24.24 Aligned_cols=65 Identities=9% Similarity=0.087 Sum_probs=46.2
Q ss_pred HHHcCCcCEEeecCCCHHHHHHHHHHHHhc--CCceeeeeeecccccCCcccccHHHHHHHhCCeEEEec
Q 017861 184 AVEQGLVKAVGVSNYSEKRLRNAYEKLKKR--GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 251 (365)
Q Consensus 184 l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~--~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~ 251 (365)
.-+.|-+..||....+++++++.++.++.. +-||-++-+.+.. .+...+.++.+.+.++.++..+
T Consensus 23 VS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~---~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 23 VAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVD---TELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred HHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCC---CcchHHHHHHHHhcCCcEEEEc
Confidence 346788888998888999999888777663 3467776654422 1112248999999999998754
No 251
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=25.20 E-value=5.5e+02 Score=23.75 Aligned_cols=89 Identities=20% Similarity=0.174 Sum_probs=66.2
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHH
Q 017861 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 207 (365)
Q Consensus 128 ~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 207 (365)
.+.++.+....+ -...+.+.+++--+.+|. ...++..+...+.....+.++.+. .-++..|-|+..++..+...+
T Consensus 35 ~i~~~~~~~~~~---f~~~~~~g~~~~a~~~g~-~~~~~~~~~~~d~~~Q~~~i~~~i-a~~~daIiv~~~d~~~~~~~v 109 (322)
T COG1879 35 TIGVVVPTLGNP---FFQAVRKGAEAAAKKLGV-VVAVVIADAQNDVAKQIAQIEDLI-AQGVDAIIINPVDPDALTPAV 109 (322)
T ss_pred eEEEEeccCCCh---HHHHHHHHHHHHHHHcCC-cEEEEecccccChHHHHHHHHHHH-HcCCCEEEEcCCChhhhHHHH
Confidence 466776664322 256788889999999997 333333344456788899999995 667899999999999999999
Q ss_pred HHHHhcCCceeeee
Q 017861 208 EKLKKRGIPLASNQ 221 (365)
Q Consensus 208 ~~~~~~~~~~~~~q 221 (365)
+.+...|+|...+-
T Consensus 110 ~~a~~aGIpVv~~d 123 (322)
T COG1879 110 KKAKAAGIPVVTVD 123 (322)
T ss_pred HHHHHCCCcEEEEe
Confidence 99998888754443
No 252
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.20 E-value=6.7e+02 Score=24.76 Aligned_cols=152 Identities=12% Similarity=0.082 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (365)
.++..+....+++.|++.|=.-- |.... ...+.+ +++++.- -+++.|..=.. ..++.+...+-++
T Consensus 197 ~~~~~~~a~~~~~~Gf~~~KiKv--g~~~~----~d~~~v-~avRe~v----G~~~~L~vDaN---~~w~~~~A~~~~~- 261 (415)
T cd03324 197 DEKLRRLCKEALAQGFTHFKLKV--GADLE----DDIRRC-RLAREVI----GPDNKLMIDAN---QRWDVPEAIEWVK- 261 (415)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC--CCCHH----HHHHHH-HHHHHhc----CCCCeEEEECC---CCCCHHHHHHHHH-
Confidence 35555666667788998775321 11000 001222 3444432 13444444332 2345554433332
Q ss_pred HHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcC---CcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccC
Q 017861 154 SLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQG---LVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 229 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G---~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 229 (365)
.|+.+ ++.++-++.+ .+-++.+.+|++.. .|. ..|=+.++.+.+.++++. .-++++|+...-.--
T Consensus 262 ~L~~~-----~l~~iEEP~~-~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-----~a~dil~~d~~~~GG 330 (415)
T cd03324 262 QLAEF-----KPWWIEEPTS-PDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-----GAIDVVQIDSCRLGG 330 (415)
T ss_pred Hhhcc-----CCCEEECCCC-CCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-----CCCCEEEeCccccCC
Confidence 23333 4555622221 23456666676654 233 445566788888887654 347888887654321
Q ss_pred CcccccHHHHHHHhCCeEEEec
Q 017861 230 KPEENGVKAACDELGITLIAYC 251 (365)
Q Consensus 230 ~~~~~~~~~~~~~~gi~v~a~~ 251 (365)
=.+...+...|+++|+.++.+.
T Consensus 331 it~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 331 VNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHHHHHcCCeEEEcC
Confidence 1112248999999999998764
No 253
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=24.84 E-value=5.9e+02 Score=24.00 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCc--CEEeecCCCHHHHH
Q 017861 178 IDGLGDAVEQGLV--KAVGVSNYSEKRLR 204 (365)
Q Consensus 178 ~~~l~~l~~~G~i--r~iGvS~~~~~~l~ 204 (365)
-+.|+.|++.|.- -+||+=+++.+.++
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~ 145 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIRE 145 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHH
Confidence 3555567777863 56888877766653
No 254
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.82 E-value=4.9e+02 Score=22.99 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceee
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 219 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 219 (365)
...+.+.+++-+++.| +++.+.....+.+...+.++.+..++ +..|=+.+...+.....+..+...++|+.+
T Consensus 15 ~~~~~~g~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~l~~~~-vdgiii~~~~~~~~~~~l~~~~~~~iPvV~ 86 (275)
T cd06317 15 QTTYNKAFQAAAEEDG---VEVIVLDANGDVARQAAQVEDLIAQK-VDGIILWPTDGQAYIPGLRKAKQAGIPVVI 86 (275)
T ss_pred HHHHHHHHHHHHHhcC---CEEEEEcCCcCHHHHHHHHHHHHHcC-CCEEEEecCCccccHHHHHHHHHCCCcEEE
Confidence 4567777777777776 45555533345566667777777664 776656554433222333334444555433
No 255
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=24.71 E-value=3.3e+02 Score=23.66 Aligned_cols=67 Identities=18% Similarity=0.024 Sum_probs=40.2
Q ss_pred HHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCC-CHHHHHHHHHHHHhcCCceeeeeeeccc
Q 017861 154 SLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSL 226 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 226 (365)
.+..+|.||+=+.+.|.. +-.-..+.+.++.+.-..+.+||..- +.+.+.++.+. ..++++|+.-+-
T Consensus 14 ~~~~~g~d~~Gfi~~~~S-~R~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~-----~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIFYPKS-PRYVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEE-----LGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE--TTC-TTB--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHH-----CTESEEEE-SGG
T ss_pred HHHHcCCCEEeeecCCCC-CCccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHH-----cCCCEEEECCCC
Confidence 467799999998877542 22223444555555554458898754 66667776665 579999987554
No 256
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=24.52 E-value=2.8e+02 Score=23.16 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=35.4
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCceeEEEe--CC--CCChHHHHHHHHHHHHc
Q 017861 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQL--AG--IWGNEGFIDGLGDAVEQ 187 (365)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg--~d~iDl~~l--~~--~~~~~~~~~~l~~l~~~ 187 (365)
|=-+.|+-|++. ....+..+++-+.+.++.+. ....|++++ +. ..+..++.+.|..|.+.
T Consensus 49 RlG~sVSKKvg~--~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDT--RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccC--cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 455666667642 23556667777777666542 223377777 22 23466777777776655
No 257
>PTZ00081 enolase; Provisional
Probab=24.36 E-value=5.1e+02 Score=25.95 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcC--CcCEEee--cCCCHHHHHHHHHHHHhcCCce
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQG--LVKAVGV--SNYSEKRLRNAYEKLKKRGIPL 217 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G--~ir~iGv--S~~~~~~l~~~~~~~~~~~~~~ 217 (365)
.+++.+.+-+.+.++.++ ++++-++. .++-|+.+.+|.+.= .|.-+|= ...+++.+.++++. --.
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl-~~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~-----~aa 349 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPF-DQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEK-----KAC 349 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCC-CcccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHh-----CCC
Confidence 466666666666666654 56663332 234467777776653 5554443 23467888888765 347
Q ss_pred eeeeeecccccCCcccccHHHHHHHhCCeEEEecc
Q 017861 218 ASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 252 (365)
Q Consensus 218 ~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~ 252 (365)
+++|+..|-+-.=.+..++...|+++|+.++...-
T Consensus 350 d~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iishr 384 (439)
T PTZ00081 350 NALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHR 384 (439)
T ss_pred CEEEeccccccCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 77777766433211223589999999999887433
No 258
>TIGR00720 sda_mono L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein.
Probab=24.33 E-value=6e+02 Score=25.55 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=33.9
Q ss_pred EEEecccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 017861 247 LIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLA 312 (365)
Q Consensus 247 v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~qlal~~~l~ 312 (365)
-..|-..++|++...-.............|. ..-.+.|.++|++++++..++.+++=..
T Consensus 140 ~~t~ySIGGGfI~~~~~~~~~~~~~~~~p~~-------f~s~~ell~~~~~~~~~i~e~v~~~E~~ 198 (455)
T TIGR00720 140 EETYYSVGGGFIVTEKHFGSEEDNNVSVAYP-------FKSAKELLELCQKHGKSISEIALLNENA 198 (455)
T ss_pred EEEEEEcCCceeeeccccccccccCCCCCcC-------CCCHHHHHHHHHHhCCCHHHHHHHHHhh
Confidence 4568888999886431111110000000011 1123488899999999999998887644
No 259
>PRK07328 histidinol-phosphatase; Provisional
Probab=24.31 E-value=5.5e+02 Score=23.43 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCC------CCCCCCchHHHHHHHHHh---ccCCCCCCcEEEEecCCCCCCCCCHHH
Q 017861 76 AAKAAFDTSLDNGITFFDTAEVYGSR------ASFGAINSETLLGRFIKE---RKQRDPEVEVTVATKFAALPWRLGRQS 146 (365)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~g------~s~~~~~sE~~lG~al~~---~~~~~~R~~~~I~tK~~~~~~~~~~~~ 146 (365)
...+.++.|.+.|+..+=.+++.... ....-.-+..-+-..++. ...+.++=+|++-.-++.. + .
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-----~-~ 92 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-----P-G 92 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc-----C-C
Confidence 35678999999999987666653320 000000001112222222 1111111245555554322 2 1
Q ss_pred HHHHHHHHHHHhCCCceeEEEeCCC--C--------------ChHHH----HHHHHHHHHcCCcCEEeecCC--------
Q 017861 147 VLAALKDSLFRLGLSSVELYQLAGI--W--------------GNEGF----IDGLGDAVEQGLVKAVGVSNY-------- 198 (365)
Q Consensus 147 i~~~l~~SL~~Lg~d~iDl~~l~~~--~--------------~~~~~----~~~l~~l~~~G~ir~iGvS~~-------- 198 (365)
....+++.|++-..||+ +..+|.. + +.+++ .+.+.++.+.|.+..||=-..
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~ 171 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRP 171 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCC
Confidence 33455556666655554 3333532 1 11222 235777888898887773321
Q ss_pred ---CHHHHHHHHHHHHhcCCceeeeeee--cccccCCcccccHHHHHHHhCCeEEEecccc
Q 017861 199 ---SEKRLRNAYEKLKKRGIPLASNQVN--YSLIYRKPEENGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 199 ---~~~~l~~~~~~~~~~~~~~~~~q~~--~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~ 254 (365)
....++++++.+.+.|..+.+|-.. +..-+..+. ..++..|++.|+.+ +.+.-+
T Consensus 172 ~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~-~~il~~~~~~g~~i-tigSDA 230 (269)
T PRK07328 172 REDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPS-PALLRACRERGIPV-VLGSDA 230 (269)
T ss_pred chhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCC-HHHHHHHHHcCCCE-EEeCCC
Confidence 1234567777777777666665431 111111111 24999999999984 443333
No 260
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=24.22 E-value=5.9e+02 Score=23.78 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHHhCCCceeEEEe---CCCC---ChHH---HHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhc
Q 017861 143 GRQSVLAALKDSLFRLGLSSVELYQL---AGIW---GNEG---FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR 213 (365)
Q Consensus 143 ~~~~i~~~l~~SL~~Lg~d~iDl~~l---~~~~---~~~~---~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 213 (365)
+.+.+.+..++.+ .-|.|-||+=-- |... ..+| +...++.+++.-.+ -|.|-++.++.++++++.
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~---- 109 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKA---- 109 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHc----
Confidence 4555555544443 457788887654 3221 1233 66677777765333 489999999999999875
Q ss_pred CCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecc
Q 017861 214 GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 252 (365)
Q Consensus 214 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~ 252 (365)
|..+ +|-+ +-+. .+ ++++.++++|+.++.+..
T Consensus 110 Gadi-INDI--~g~~-d~---~~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 110 GAHI-INDI--RSLS-EP---GALEAAAETGLPVCLMHM 141 (282)
T ss_pred CCCE-EEEC--CCCC-CH---HHHHHHHHcCCCEEEEcC
Confidence 3322 2222 1121 21 378889999999988753
No 261
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.18 E-value=4.6e+02 Score=23.88 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCcCEEeec----------CCCHHHHHHHHHHHHhc-CCceeeeee-ecccccCCccc--------cc
Q 017861 176 GFIDGLGDAVEQGLVKAVGVS----------NYSEKRLRNAYEKLKKR-GIPLASNQV-NYSLIYRKPEE--------NG 235 (365)
Q Consensus 176 ~~~~~l~~l~~~G~ir~iGvS----------~~~~~~l~~~~~~~~~~-~~~~~~~q~-~~n~~~~~~~~--------~~ 235 (365)
.+-++++.+++-|. .++.+. ..+...+.++.+.+... +..+.+... .+|+.++.+.. ..
T Consensus 11 ~l~~~l~~a~~~G~-d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~ 89 (279)
T cd00019 11 GLENALKRAKEIGF-DTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKD 89 (279)
T ss_pred cHHHHHHHHHHcCC-CEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHH
Confidence 34556677777773 122221 11446777777777766 455555432 24565655322 25
Q ss_pred HHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCH
Q 017861 236 VKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 302 (365)
Q Consensus 236 ~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~ 302 (365)
.++.|++.|+..+...+-... .......+....+.+.++.++|+++|+.+
T Consensus 90 ~i~~A~~lG~~~v~~~~g~~~-----------------~~~~~~~~~~~~~~l~~l~~~a~~~gi~l 139 (279)
T cd00019 90 EIERCEELGIRLLVFHPGSYL-----------------GQSKEEGLKRVIEALNELIDKAETKGVVI 139 (279)
T ss_pred HHHHHHHcCCCEEEECCCCCC-----------------CCCHHHHHHHHHHHHHHHHHhccCCCCEE
Confidence 778888888887765332110 01123344445555555555555666544
No 262
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=24.17 E-value=3.5e+02 Score=24.24 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 017861 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (365)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (365)
..+++++..++.+.+.+.|..|+=|+..|+.+.. +-+.+....+... .++-|-.=.|. .+.+...+
T Consensus 131 ~~L~~e~i~~a~~~~~~agadfIKTsTG~~~~ga-----t~~~v~~m~~~~~-----~~~~IKasGGI----rt~~~a~~ 196 (221)
T PRK00507 131 CLLTDEEKVKACEIAKEAGADFVKTSTGFSTGGA-----TVEDVKLMRETVG-----PRVGVKASGGI----RTLEDALA 196 (221)
T ss_pred CcCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC-----CHHHHHHHHHHhC-----CCceEEeeCCc----CCHHHHHH
Q ss_pred HHHHHHHHhCCCc
Q 017861 150 ALKDSLFRLGLSS 162 (365)
Q Consensus 150 ~l~~SL~~Lg~d~ 162 (365)
-++.--.|+||.+
T Consensus 197 ~i~aGA~riGtS~ 209 (221)
T PRK00507 197 MIEAGATRLGTSA 209 (221)
T ss_pred HHHcCcceEccCc
No 263
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=24.11 E-value=6.2e+02 Score=23.94 Aligned_cols=138 Identities=9% Similarity=0.034 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHCCCCeeec---cc-----ccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHH
Q 017861 74 MKAAKAAFDTSLDNGITFFDT---AE-----VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (365)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DT---A~-----~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~ 145 (365)
.++..+....+.+.|+..||- .+ .||.|.+.. +--+.+.+.++...... ..++-|+.|+... ++. .+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll--~~~~~~~eiv~avr~~~-~~~~pVsvKiR~g-~~~-~~ 148 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLL--KDPELIYQGAKAMREAV-PAHLPVTVKVRLG-WDS-GE 148 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhh--cCHHHHHHHHHHHHHhc-CCCcceEEEEECC-CCC-ch
Confidence 466666777778899999993 22 244432100 11344444444432111 1357788887431 221 12
Q ss_pred HHHHHHHHHHHHhCCCceeEEEeCCCCC-----h-HHHHHHHHHHHHcCCcCEEeecCC-CHHHHHHHHHHHHhcCCcee
Q 017861 146 SVLAALKDSLFRLGLSSVELYQLAGIWG-----N-EGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLA 218 (365)
Q Consensus 146 ~i~~~l~~SL~~Lg~d~iDl~~l~~~~~-----~-~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~ 218 (365)
. ...+-+.|+..|. |.+.+|.... . .--|+.+.++++.=.|.-||.... ++++.+++++. ...+
T Consensus 149 ~-~~~~a~~l~~~Gv---d~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~-----~g~D 219 (312)
T PRK10550 149 R-KFEIADAVQQAGA---TELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI-----TGCD 219 (312)
T ss_pred H-HHHHHHHHHhcCC---CEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc-----cCCC
Confidence 2 2456666777775 5555654221 0 113677888888777888887765 66777776543 2466
Q ss_pred eeeeecc
Q 017861 219 SNQVNYS 225 (365)
Q Consensus 219 ~~q~~~n 225 (365)
.+++-=-
T Consensus 220 gVmiGRg 226 (312)
T PRK10550 220 AVMIGRG 226 (312)
T ss_pred EEEEcHH
Confidence 6666433
No 264
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=23.94 E-value=5.9e+02 Score=23.63 Aligned_cols=96 Identities=10% Similarity=0.016 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
++++.-.++++.|-++|+. .....+.|+... ...+-+..... .+.-...+.+.+
T Consensus 28 vs~~tr~~V~~~a~elgY~-------------------pn~~a~~l~~~~----~~~i~vi~~~~---~~~~~~~~~~gi 81 (341)
T PRK10703 28 VAEETRNAVWAAIKELHYS-------------------PSAVARSLKVNH----TKSIGLLATSS---EAPYFAEIIEAV 81 (341)
T ss_pred CCHHHHHHHHHHHHHHCCC-------------------cCHHHHHHhhCC----CCeEEEEeCCC---CCchHHHHHHHH
Confidence 5678888899999999985 223345555432 23444444332 223356788899
Q ss_pred HHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecC
Q 017861 152 KDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSN 197 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 197 (365)
++.++.+| .+++++....+.+...+.++.+... ++..|-+..
T Consensus 82 ~~~~~~~g---~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~ 123 (341)
T PRK10703 82 EKNCYQKG---YTLILCNAWNNLEKQRAYLSMLAQK-RVDGLLVMC 123 (341)
T ss_pred HHHHHHCC---CEEEEEeCCCCHHHHHHHHHHHHHc-CCCEEEEec
Confidence 99999998 3455553333455666777776654 466665543
No 265
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=23.83 E-value=2.2e+02 Score=26.49 Aligned_cols=58 Identities=7% Similarity=0.014 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHhcCCceeeeeeeccc---------cc--CCcccccHHHHHHHhCCeEEEecccc
Q 017861 197 NYSEKRLRNAYEKLKKRGIPLASNQVNYSL---------IY--RKPEENGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~---------~~--~~~~~~~~~~~~~~~gi~v~a~~~l~ 254 (365)
+.+.+..++.++.|.+.|++-..+--.+.- .. +...-.+++++++++||+|+.|.--.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~ 96 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE 96 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 346677888888888887654444333321 00 11112368999999998887765444
No 266
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.67 E-value=5.6e+02 Score=23.28 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=48.1
Q ss_pred HHHHHhCCCceeEEEe--CCC---CChHHHHHHHHHHHHcC-CcCEEeec-------CCC-------HHHHHHHHHHHHh
Q 017861 153 DSLFRLGLSSVELYQL--AGI---WGNEGFIDGLGDAVEQG-LVKAVGVS-------NYS-------EKRLRNAYEKLKK 212 (365)
Q Consensus 153 ~SL~~Lg~d~iDl~~l--~~~---~~~~~~~~~l~~l~~~G-~ir~iGvS-------~~~-------~~~l~~~~~~~~~ 212 (365)
+.++.+|.|++.+.+- +.. ...++..+.+.++.++- .+...-.+ +.. .+.+.++++.+..
T Consensus 17 ~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~ 96 (279)
T cd00019 17 KRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEE 96 (279)
T ss_pred HHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999988754 111 11345666666665553 33322211 222 1346677777777
Q ss_pred cCCceeeeeeecccccCCccc---------ccHHHHHHHhCCeEE
Q 017861 213 RGIPLASNQVNYSLIYRKPEE---------NGVKAACDELGITLI 248 (365)
Q Consensus 213 ~~~~~~~~q~~~n~~~~~~~~---------~~~~~~~~~~gi~v~ 248 (365)
.|.+..++........ ..+. ..+.+.++++||.+.
T Consensus 97 lG~~~v~~~~g~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gi~l~ 140 (279)
T cd00019 97 LGIRLLVFHPGSYLGQ-SKEEGLKRVIEALNELIDKAETKGVVIA 140 (279)
T ss_pred cCCCEEEECCCCCCCC-CHHHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 7766444333222211 1111 135566667788643
No 267
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=23.66 E-value=4.4e+02 Score=22.09 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=9.9
Q ss_pred CChHHHHHHHHHHHHcC
Q 017861 172 WGNEGFIDGLGDAVEQG 188 (365)
Q Consensus 172 ~~~~~~~~~l~~l~~~G 188 (365)
...+++++.|.++.++|
T Consensus 180 ~gi~~l~~~i~~~~~~~ 196 (196)
T PRK00454 180 QGIDELRAAIAKWLAEA 196 (196)
T ss_pred CCHHHHHHHHHHHhcCC
Confidence 34666666666665543
No 268
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=23.61 E-value=8e+02 Score=25.05 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=51.7
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEe--CCC-----CChHHHHHHHH
Q 017861 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQL--AGI-----WGNEGFIDGLG 182 (365)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l--~~~-----~~~~~~~~~l~ 182 (365)
|+.|-+++++...+.+.+-++|.|=+. .+-|-..++...+.++.+ ++++.+ |.. +..+.++..+.
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC~-------seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~~G~~~al~~lv 141 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSCT-------AELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKENWAADETFYQLV 141 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcH-------HHHhccCHHHHHHHhCCC-CCEEEEecCCcccccchHHHHHHHHHH
Confidence 666777776654332234456666552 444555555555555543 566666 322 11233333332
Q ss_pred H-HH-----------HcCCcCEEeecCC---CHHHHHHHHHHHHhcCCce
Q 017861 183 D-AV-----------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPL 217 (365)
Q Consensus 183 ~-l~-----------~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~ 217 (365)
+ +. +.++|--||.++. .+..+.++.+.++..|+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~v 191 (519)
T PRK02910 142 RALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDV 191 (519)
T ss_pred HHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeE
Confidence 2 22 2345778887642 3556666666666666544
No 269
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=23.60 E-value=97 Score=29.33 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEeC-CCCChHHHHHHHHHHHHcCCc
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQLA-GIWGNEGFIDGLGDAVEQGLV 190 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l~-~~~~~~~~~~~l~~l~~~G~i 190 (365)
.+...+.+++.+++||++ +|.+.-. +..-.+.+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~tt~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRTTSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeCCCHHHHHHHHHHHHHHHHCCCE
Confidence 556788889999999996 5866553 212245688899999999998
No 270
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=23.56 E-value=2.7e+02 Score=27.94 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHH
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 210 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~ 210 (365)
.+.+...+.+.+.|+.||+++ |-++.-. ...+..-+++++|+++|++ |...| +.++++......
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~y~QS-er~~~y~~~~e~L~e~G~A-Y~C~C--t~eel~~~r~~~ 111 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRTFRQS-DRFDRYDEAAEKLKAAGRL-YPCYE--TPEELELKRKIQ 111 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-CccccHH-HHHHHHHHHHHHHHHCCCE-EEecC--chHHHHHHHHHH
Confidence 456788999999999999984 7543310 1245678889999999985 44444 456776654433
No 271
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=23.47 E-value=3.7e+02 Score=26.94 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=56.8
Q ss_pred HHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhc--CCc-eeeeeeecccccCCc
Q 017861 155 LFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR--GIP-LASNQVNYSLIYRKP 231 (365)
Q Consensus 155 L~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~--~~~-~~~~q~~~n~~~~~~ 231 (365)
.+.||++|. +++=|-.... ..-+-...+-+.|-...+|....+++++++.+...+.. +.+ |-+|-+ .++-++..
T Consensus 12 ~~~lgiryP-iiqgpMa~Gi-Ss~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~ 88 (444)
T TIGR02814 12 REDYGVRYA-YVAGAMANGI-ASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPAL 88 (444)
T ss_pred HHHhCCCCc-EECccccCCC-CCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCccc
Confidence 456777665 2221211011 12333445567899999999999999999888887652 223 666553 22222222
Q ss_pred ccccHHHHHHHhCCeEEEec
Q 017861 232 EENGVKAACDELGITLIAYC 251 (365)
Q Consensus 232 ~~~~~~~~~~~~gi~v~a~~ 251 (365)
+.++++.|.+++|.++..+
T Consensus 89 -e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 89 -EWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred -HHHHHHHHHHcCCCEEEec
Confidence 2358899999999987654
No 272
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=23.44 E-value=4.2e+02 Score=24.41 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=32.4
Q ss_pred CCceeEEEeCCCC------ChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHH
Q 017861 160 LSSVELYQLAGIW------GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 206 (365)
Q Consensus 160 ~d~iDl~~l~~~~------~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 206 (365)
....|+++|.+++ ...++++-|.+|+++| +.|=+.+|+...+.+.
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg--~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG--KTVLMVTHDLGLVMAY 205 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCcHHhHhh
Confidence 4567899994331 2468899999999998 5677788876665444
No 273
>PRK06256 biotin synthase; Validated
Probab=23.26 E-value=6.4e+02 Score=23.79 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHCCCCe
Q 017861 71 DRKMKAAKAAFDTSLDNGITF 91 (365)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~ 91 (365)
..+.++..+.++.+.+.|++-
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~ 110 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGT 110 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCE
Confidence 457789999999999999863
No 274
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=23.26 E-value=4.1e+02 Score=24.62 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=41.2
Q ss_pred HhCCCceeEEEe-CC----------CCChHHHHHHHHH----HHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeee
Q 017861 157 RLGLSSVELYQL-AG----------IWGNEGFIDGLGD----AVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 221 (365)
Q Consensus 157 ~Lg~d~iDl~~l-~~----------~~~~~~~~~~l~~----l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q 221 (365)
-+.++.+|.+++ |. .++.+++.+++++ .++.|| .+|+...+++..+++++. |..+.++.
T Consensus 164 I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~----G~~~v~~g 237 (267)
T PRK10128 164 ILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAW----GANFVAVG 237 (267)
T ss_pred HhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHc----CCcEEEEC
Confidence 345689999999 21 1334566666555 556775 467766677776666543 45666666
Q ss_pred eecccccC
Q 017861 222 VNYSLIYR 229 (365)
Q Consensus 222 ~~~n~~~~ 229 (365)
....++.+
T Consensus 238 ~D~~~l~~ 245 (267)
T PRK10128 238 VDTMLYTD 245 (267)
T ss_pred hHHHHHHH
Confidence 66555443
No 275
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=23.23 E-value=6.2e+02 Score=23.66 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=12.7
Q ss_pred cHHHHHHHhCCeEEEeccccc
Q 017861 235 GVKAACDELGITLIAYCPIAQ 255 (365)
Q Consensus 235 ~~~~~~~~~gi~v~a~~~l~~ 255 (365)
+.+..+++.|+.+.+..-+|.
T Consensus 149 ~~i~~a~~~Gi~~~s~~iiG~ 169 (309)
T TIGR00423 149 EVIKTAHRLGIPTTATMMFGH 169 (309)
T ss_pred HHHHHHHHcCCCceeeEEecC
Confidence 366666777776665555543
No 276
>PRK10551 phage resistance protein; Provisional
Probab=23.22 E-value=6.3e+02 Score=25.76 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=69.4
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEE-eCC--CCChHHHHHHHHHHHHcCCcCEEeecCCC--HHH
Q 017861 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQ-LAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNYS--EKR 202 (365)
Q Consensus 128 ~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~-l~~--~~~~~~~~~~l~~l~~~G~ir~iGvS~~~--~~~ 202 (365)
.+.|+-.+.. .....+.+...+.+.|+.++.+..-+.+ +++ .....+..+.++.|++.| -.|.+.+|+ ...
T Consensus 349 ~~~lsINis~--~~l~~~~f~~~l~~~l~~~~~~~~~LvlEItE~~~~~~~~~~~~l~~Lr~~G--~~ialDDFGtg~ss 424 (518)
T PRK10551 349 GAKLGINISP--AHLHSDSFKADVQRLLASLPADHFQIVLEITERDMVQEEEATKLFAWLHSQG--IEIAIDDFGTGHSA 424 (518)
T ss_pred CcEEEEEeCH--HHHCCchHHHHHHHHHHhCCCCcceEEEEEechHhcCCHHHHHHHHHHHHCC--CEEEEECCCCCchh
Confidence 4445555533 2344456778888999999876543333 232 123345678899999999 557777764 233
Q ss_pred HHHHHHHHHhcCCceeeeeeecccccCCcc-------cccHHHHHHHhCCeEEEe
Q 017861 203 LRNAYEKLKKRGIPLASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAY 250 (365)
Q Consensus 203 l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-------~~~~~~~~~~~gi~v~a~ 250 (365)
+..+.. .+++++-+.-+.+..-.. -..+++.|++.|+.++|=
T Consensus 425 l~~L~~------l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 425 LIYLER------FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred HHHHHh------CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 444432 367777776554432111 124899999999999984
No 277
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=23.21 E-value=6.5e+02 Score=23.86 Aligned_cols=82 Identities=10% Similarity=0.053 Sum_probs=37.4
Q ss_pred CcEEEEecCCCCC---CCCCHHHHHHHHHHHHHHhCCCceeEEEe---C-C--CCChHHHHHHHHHHHHcCCcCEEeecC
Q 017861 127 VEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQL---A-G--IWGNEGFIDGLGDAVEQGLVKAVGVSN 197 (365)
Q Consensus 127 ~~~~I~tK~~~~~---~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l---~-~--~~~~~~~~~~l~~l~~~G~ir~iGvS~ 197 (365)
+++.|..|+.... ...+.+... .+-+.|+..|+|+|++-.= . . .......++.+.++++.=.|.-++..+
T Consensus 220 ~d~~v~vri~~~~~~~~g~~~~e~~-~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~ 298 (336)
T cd02932 220 EDKPLFVRISATDWVEGGWDLEDSV-ELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGL 298 (336)
T ss_pred CCceEEEEEcccccCCCCCCHHHHH-HHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCC
Confidence 4666777765321 122333332 2333456667666653210 0 0 000111234455555555566566655
Q ss_pred C-CHHHHHHHHHH
Q 017861 198 Y-SEKRLRNAYEK 209 (365)
Q Consensus 198 ~-~~~~l~~~~~~ 209 (365)
. +++.++++++.
T Consensus 299 i~t~~~a~~~l~~ 311 (336)
T cd02932 299 ITDPEQAEAILES 311 (336)
T ss_pred CCCHHHHHHHHHc
Confidence 4 55555555443
No 278
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=23.09 E-value=3.9e+02 Score=23.88 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=53.0
Q ss_pred HHHHHHHCCCCeeec-ccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCC---C--CCHHHHHHHHHH
Q 017861 80 AFDTSLDNGITFFDT-AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW---R--LGRQSVLAALKD 153 (365)
Q Consensus 80 ~l~~A~~~Gin~~DT-A~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~---~--~~~~~i~~~l~~ 153 (365)
-|++..+. .|.++. +..|... +++.+.+|.++.+ +++..+-|+...-. . ...+.+.+.+-+
T Consensus 11 ~L~~Ya~~-F~~VEvn~TFY~~P-------~~~t~~~W~~~~p-----~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~ 77 (230)
T PF01904_consen 11 RLAYYARH-FNTVEVNSTFYRIP-------SPETVARWREQTP-----EGFRFSVKAPQLITHERRLRDCAEELWRRFLE 77 (230)
T ss_dssp HHHHHCCT--SEEEE-HHCCSSS--------HHHHHHHHCTS------TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHH
T ss_pred HHHHHHHh-CCeEEECcccCCCC-------CHHHHHHHHhhCC-----CCeEEEEeccHHheecccccccHHHHHHHHHH
Confidence 34444444 566654 5567764 3889999988775 79999999865311 1 135566455556
Q ss_pred HHHHhCCCceeEEEe--C-CCCChHHHHHHHHHHHHc
Q 017861 154 SLFRLGLSSVELYQL--A-GIWGNEGFIDGLGDAVEQ 187 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l--~-~~~~~~~~~~~l~~l~~~ 187 (365)
.++-|+ +.+..+++ | ......+.++.|+.+.+.
T Consensus 78 ~~~~L~-~klg~iL~Q~Ppsf~~~~~~~~~l~~~l~~ 113 (230)
T PF01904_consen 78 ALEPLG-EKLGPILFQFPPSFRFTPENLERLDAFLDR 113 (230)
T ss_dssp HCHHHH-T-EEEEEEE--TT--S-HHHHHHHHHHHHH
T ss_pred HHHHHh-hcceEEEEEcCCCcCCCHHHHHHHHHHHhh
Confidence 999998 89998888 3 322344555555554443
No 279
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=23.07 E-value=7.7e+02 Score=24.68 Aligned_cols=107 Identities=10% Similarity=0.029 Sum_probs=50.6
Q ss_pred HHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC-ceeEEEe--CCCCC-----hHHHHHH
Q 017861 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-SVELYQL--AGIWG-----NEGFIDG 180 (365)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d-~iDl~~l--~~~~~-----~~~~~~~ 180 (365)
|+-|-++|++...+.| .+=++|.|-+...-..-+-+.+.+.+++-++.=..+ .+.++.+ |+... .+..+++
T Consensus 71 ~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G~~~a~~a 150 (454)
T cd01973 71 AKRVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTGYDEAVRS 150 (454)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHHHHHHHHH
Confidence 7778888887554332 244778777743212223333333333222110001 3566666 33221 2233333
Q ss_pred HHH-HHH----cCCcCEEeecCCCHHHHHHHHHHHHhcCCce
Q 017861 181 LGD-AVE----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 217 (365)
Q Consensus 181 l~~-l~~----~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 217 (365)
+-+ +.. +++|--||-.+ ++..++++.+.++..|+.+
T Consensus 151 li~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 151 VVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred HHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCE
Confidence 322 222 46677776432 3455666665566656543
No 280
>PRK06424 transcription factor; Provisional
Probab=23.06 E-value=3.7e+02 Score=22.41 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=40.9
Q ss_pred cHHHHHHHhCCeEEEe---cccccccccCCCCCCC-------C-CC-CCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCH
Q 017861 235 GVKAACDELGITLIAY---CPIAQGALTGKYTPQN-------P-PT-GPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 302 (365)
Q Consensus 235 ~~~~~~~~~gi~v~a~---~~l~~G~L~~~~~~~~-------~-~~-~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~ 302 (365)
.+=+.|.+.|..|..+ +|...- .++.... . .. ..+.+.+-+...+.....-+.|+.+-++.|+|.
T Consensus 24 ~vC~~Ca~~G~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 24 NVCDDCAKFGTPVIEHNKFKEVKED---IKVKLPEKKIIVPTYKKAYKKYKKKASDEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred ehhHHHHHcCCcccccCCCCccccc---ccccCccccccccccccCCCCccCcccHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4788899999999988 455321 0111111 0 00 111122222222223334457777888889999
Q ss_pred HHHHHHHHhc
Q 017861 303 TQVGLNWLLA 312 (365)
Q Consensus 303 ~qlal~~~l~ 312 (365)
.++|-+--.+
T Consensus 101 ~eLA~~iGvs 110 (144)
T PRK06424 101 ADLAAKIFER 110 (144)
T ss_pred HHHHHHhCCC
Confidence 9888765544
No 281
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.05 E-value=6e+02 Score=23.44 Aligned_cols=125 Identities=16% Similarity=0.088 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
.+.++..++++.-.+.||+.|+....-.+..-+...+.|. +-+.+... .+..+++=+ ... +.+
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~-~~~~l~~~------~~~~~~~~~------~~~----~dv 79 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEE-VLAGLPRR------PGVRYSALV------PNL----RGA 79 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHH-HHhhcccC------CCCEEEEEC------CCH----HHH
Confidence 4568888999999999999999874311110000001243 32333221 222222212 122 345
Q ss_pred HHHHHHhCCCceeEEEeCCC--------CC----hHHHHHHHHHHHHcCCcCEEeec---------CCCHHHHHHHHHHH
Q 017861 152 KDSLFRLGLSSVELYQLAGI--------WG----NEGFIDGLGDAVEQGLVKAVGVS---------NYSEKRLRNAYEKL 210 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~~~--------~~----~~~~~~~l~~l~~~G~ir~iGvS---------~~~~~~l~~~~~~~ 210 (365)
+.+++ .|.+.+.++.--+. .. .+...+.++.+++.|+.-.+.++ .++++.+.++.+.+
T Consensus 80 ~~A~~-~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 158 (274)
T cd07938 80 ERALA-AGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERL 158 (274)
T ss_pred HHHHH-cCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHH
Confidence 55554 46777777765111 11 34455667777888876544444 22455555555555
Q ss_pred HhcC
Q 017861 211 KKRG 214 (365)
Q Consensus 211 ~~~~ 214 (365)
...|
T Consensus 159 ~~~G 162 (274)
T cd07938 159 LDLG 162 (274)
T ss_pred HHcC
Confidence 4444
No 282
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=23.00 E-value=6.3e+02 Score=23.64 Aligned_cols=110 Identities=22% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeEEEe--CCCCChHHHHHHHHHHHHcCC-c-CEEeecCCCHH------------H
Q 017861 139 PWRLGRQSVLAALKDSLFRLGLSSVELYQL--AGIWGNEGFIDGLGDAVEQGL-V-KAVGVSNYSEK------------R 202 (365)
Q Consensus 139 ~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l--~~~~~~~~~~~~l~~l~~~G~-i-r~iGvS~~~~~------------~ 202 (365)
+.-.+.+.+++-++..++ +. +-+.+-.- |+. -.++.++.|.++++.|. + -++|+=+.+.+ +
T Consensus 88 ~t~l~~~~L~~l~~~i~~-~~-~~~~isi~trpd~-l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~ 164 (302)
T TIGR01212 88 NTYAPVEVLKEMYEQALS-YD-DVVGLSVGTRPDC-VPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFAC 164 (302)
T ss_pred cCCCCHHHHHHHHHHHhC-CC-CEEEEEEEecCCc-CCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHH
Confidence 445677777777776665 21 11222111 443 25678899999999888 5 46898776554 4
Q ss_pred HHHHHHHHHhcCCceeeeeeecccccCCccc-ccHHHHHHHhCCeEEEecc
Q 017861 203 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCP 252 (365)
Q Consensus 203 l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~~gi~v~a~~~ 252 (365)
+.++++.++..|+.+.+ .+.+.+=....+. .+.++++.+.++..+...+
T Consensus 165 ~~~ai~~l~~~gi~v~~-~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~ 214 (302)
T TIGR01212 165 YVDAVKRARKRGIKVCS-HVILGLPGEDREEMMETAKIVSLLDVDGIKIHP 214 (302)
T ss_pred HHHHHHHHHHcCCEEEE-eEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 44555556666654332 4444432222211 2356666666655444333
No 283
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.99 E-value=1.4e+02 Score=26.38 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCC-CHHHHHHHHHHHHhcCCceeeee
Q 017861 143 GRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQ 221 (365)
Q Consensus 143 ~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q 221 (365)
+++...+- -+.|-+-|+..+.+=+ ..++..+.+++++++..=-.||.-+. +.++++++++. |-.|-+
T Consensus 14 ~~~~a~~i-a~al~~gGi~~iEit~-----~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA~Fiv-- 81 (201)
T PRK06015 14 DVEHAVPL-ARALAAGGLPAIEITL-----RTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GSRFIV-- 81 (201)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeC-----CCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CCCEEE--
Confidence 45544443 3445566765544322 34456677777776643356998886 77888887765 233322
Q ss_pred eecccccCCcccccHHHHHHHhCCeEEE
Q 017861 222 VNYSLIYRKPEENGVKAACDELGITLIA 249 (365)
Q Consensus 222 ~~~n~~~~~~~~~~~~~~~~~~gi~v~a 249 (365)
++.. ..+++++|+++||.++.
T Consensus 82 ---SP~~----~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 ---SPGT----TQELLAAANDSDVPLLP 102 (201)
T ss_pred ---CCCC----CHHHHHHHHHcCCCEeC
Confidence 2211 22599999999999885
No 284
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=22.94 E-value=1.1e+02 Score=21.54 Aligned_cols=17 Identities=12% Similarity=0.454 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCHHHHH
Q 017861 290 RIKELGENYSKTSTQVG 306 (365)
Q Consensus 290 ~l~~ia~~~~~s~~qla 306 (365)
.+++||+++|+++.+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68999999999999875
No 285
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.94 E-value=2e+02 Score=24.92 Aligned_cols=85 Identities=14% Similarity=0.195 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCC------CCCHHHHHHH
Q 017861 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW------RLGRQSVLAA 150 (365)
Q Consensus 77 ~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~------~~~~~~i~~~ 150 (365)
..+.|..- +.-+=.+|+..+.....- ++.+-.+++.....-|.--|++++-+..... ....+..++.
T Consensus 51 ~a~~ia~~-~a~~~~ld~~~N~~~~~~------~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
T PF14606_consen 51 VADLIAEI-DADLIVLDCGPNMSPEEF------RERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREA 123 (178)
T ss_dssp HHHHHHHS---SEEEEEESHHCCTTTH------HHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHH
T ss_pred HHHHHhcC-CCCEEEEEeecCCCHHHH------HHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHH
Confidence 33444332 556666666666433222 4555566665443334567888887765322 2235667777
Q ss_pred HHHHHHHhC-CCceeEEEe
Q 017861 151 LKDSLFRLG-LSSVELYQL 168 (365)
Q Consensus 151 l~~SL~~Lg-~d~iDl~~l 168 (365)
+++..+.|. -..-+|+++
T Consensus 124 ~r~~v~~l~~~g~~nl~~l 142 (178)
T PF14606_consen 124 LREAVEQLRKEGDKNLYYL 142 (178)
T ss_dssp HHHHHHHHHHTT-TTEEEE
T ss_pred HHHHHHHHHHcCCCcEEEe
Confidence 888777772 224467777
No 286
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=22.83 E-value=6.8e+02 Score=23.95 Aligned_cols=128 Identities=20% Similarity=0.184 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCC---CCCcEEEEecCCCCCCCCCHHHH
Q 017861 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD---PEVEVTVATKFAALPWRLGRQSV 147 (365)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~---~R~~~~I~tK~~~~~~~~~~~~i 147 (365)
.++.++...+++.+.+.|++=|=- -.| |..|-+-|...-.+. .-.++-++|-.- .
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRl----TGG--------EPllR~dl~eIi~~l~~~~~~~islTTNG~----------~ 99 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRL----TGG--------EPLLRKDLDEIIARLARLGIRDLSLTTNGV----------L 99 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEE----eCC--------CchhhcCHHHHHHHHhhcccceEEEecchh----------h
Confidence 357899999999999999997742 222 444433332211100 025666776651 3
Q ss_pred HHHHHHHHHHhCCCceeEEEe---CC-------CCChHHHHHHHHHHHHcCCc----CEEeecCCCHHHHHHHHHHHHhc
Q 017861 148 LAALKDSLFRLGLSSVELYQL---AG-------IWGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLKKR 213 (365)
Q Consensus 148 ~~~l~~SL~~Lg~d~iDl~~l---~~-------~~~~~~~~~~l~~l~~~G~i----r~iGvS~~~~~~l~~~~~~~~~~ 213 (365)
..-...-|+..|.+.|-+=+= ++ .....++++.++.+++.|.- -.+=+.+.+-.++..+++.+...
T Consensus 100 L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~ 179 (322)
T COG2896 100 LARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKER 179 (322)
T ss_pred HHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhc
Confidence 344455677777665542221 10 11267889999999998863 35666677778888888887776
Q ss_pred CCceeee
Q 017861 214 GIPLASN 220 (365)
Q Consensus 214 ~~~~~~~ 220 (365)
+..+.++
T Consensus 180 ~~~lrfI 186 (322)
T COG2896 180 GAQLRFI 186 (322)
T ss_pred CCceEEE
Confidence 6554443
No 287
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.60 E-value=49 Score=28.21 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHhhhccCCCCCCCC
Q 017861 338 RLTDEEVNELRSMASEIKPVVSFPL 362 (365)
Q Consensus 338 ~L~~e~~~~l~~~~~~~~~~~~~p~ 362 (365)
.|+++|.+.+-.+...+..++|||+
T Consensus 100 ~Ls~~E~a~f~~LN~aY~~rFgfPf 124 (176)
T COG3195 100 RLSPEEFARFTELNAAYVERFGFPF 124 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCce
Confidence 8999999999999999999999997
No 288
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=22.47 E-value=5.7e+02 Score=24.33 Aligned_cols=103 Identities=12% Similarity=-0.014 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCCCceeEEEe-CCCCChHHHHHHHHHHHHc-C--CcCEEeecCCCHHHHHHHHHHHHhcCCceeeee
Q 017861 146 SVLAALKDSLFRLGLSSVELYQL-AGIWGNEGFIDGLGDAVEQ-G--LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 221 (365)
Q Consensus 146 ~i~~~l~~SL~~Lg~d~iDl~~l-~~~~~~~~~~~~l~~l~~~-G--~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q 221 (365)
.+++++.+.|.++..+.-+++.+ .+......+...++.+.++ + ++-..|++.-+.-. -+.- +...|. ..++.
T Consensus 5 ~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg--~AaG-lA~~G~-~pvv~ 80 (327)
T CHL00144 5 FLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTG--MAIG-AAMTGL-RPIVE 80 (327)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHH--HHHH-HHHCCC-EEEEE
Confidence 46778888888888888999999 3321122334445555544 3 56677777643222 2222 223443 34444
Q ss_pred eecccccCCcccccHHHHHHHh-------CCeEEEecc
Q 017861 222 VNYSLIYRKPEENGVKAACDEL-------GITLIAYCP 252 (365)
Q Consensus 222 ~~~n~~~~~~~~~~~~~~~~~~-------gi~v~a~~~ 252 (365)
..|..+.++..+.=..+.|..+ ++.++...+
T Consensus 81 ~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~ 118 (327)
T CHL00144 81 GMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGP 118 (327)
T ss_pred eehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEec
Confidence 4444333333332134556664 788877655
No 289
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=22.30 E-value=6.5e+02 Score=23.55 Aligned_cols=110 Identities=14% Similarity=0.057 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHHh---CCCceeEEEeCCC-----CChHH----HHHHHHHHHHcCCcCE-E--eecC-CCHHHHHH
Q 017861 142 LGRQSVLAALKDSLFRL---GLSSVELYQLAGI-----WGNEG----FIDGLGDAVEQGLVKA-V--GVSN-YSEKRLRN 205 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~L---g~d~iDl~~l~~~-----~~~~~----~~~~l~~l~~~G~ir~-i--GvS~-~~~~~l~~ 205 (365)
.+++.++......++.+ |+-|+|+.+-|.. .+.++ +.+++.+.+++-.|+. + ++.. .+++.+++
T Consensus 65 ~t~e~l~~~~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r~~~~~~~~~ 144 (324)
T TIGR01430 65 RTEDDFKRLAYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCGMRHKQPEAAEE 144 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHH
Confidence 56788888888887655 8899998866532 12344 4456666666544443 2 2222 24566666
Q ss_pred HHHHHHhcCCceeeeeeeccc--ccC-CcccccHHHHHHHhCCeEEEecc
Q 017861 206 AYEKLKKRGIPLASNQVNYSL--IYR-KPEENGVKAACDELGITLIAYCP 252 (365)
Q Consensus 206 ~~~~~~~~~~~~~~~q~~~n~--~~~-~~~~~~~~~~~~~~gi~v~a~~~ 252 (365)
.++.+...+.. .++-+.+.. ... ...-..+++.|+++|+.+..+.-
T Consensus 145 ~~~~~~~~~~~-~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~ 193 (324)
T TIGR01430 145 TLELAKPYKEQ-TIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAG 193 (324)
T ss_pred HHHHHHhhccC-cEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecC
Confidence 66655432211 122222221 111 11112588899999999887754
No 290
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=22.29 E-value=2.8e+02 Score=30.64 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-Cc--EEeecCCCHHH----HHHHHhhhCCCCCHHHHHHHHHhhhccC
Q 017861 283 NLQPLLNRIKELGENYSKTSTQVGLNWLLAQD-NV--VPIPGAKNAEQ----AAEFAGALGWRLTDEEVNELRSMASEIK 355 (365)
Q Consensus 283 ~~~~~~~~l~~ia~~~~~s~~qlal~~~l~~~-~v--~~i~g~~~~~~----l~en~~a~~~~L~~e~~~~l~~~~~~~~ 355 (365)
+....++.|++-.++.. =...+.-+|.+.+| .+ +++|...-.++ .++-+......|++|+...|.+-.++++
T Consensus 418 r~~~~~~~Lr~~le~~~-~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~e~L~~~~~~l~de~~~ki~~~~~~lk 496 (978)
T COG1026 418 RFLDYLQNLREKLEKGP-YFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLK 496 (978)
T ss_pred hhHHHHHHHHHhhhcCh-HHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 34444555555444432 36788889999998 44 45555554444 4455566667999999999999887777
Q ss_pred CCCCCC
Q 017861 356 PVVSFP 361 (365)
Q Consensus 356 ~~~~~p 361 (365)
.+..-|
T Consensus 497 e~Q~~~ 502 (978)
T COG1026 497 ERQDQP 502 (978)
T ss_pred HhhcCC
Confidence 665544
No 291
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=22.24 E-value=2.9e+02 Score=25.93 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=37.0
Q ss_pred HHHhCCCceeEEEeC-CCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHH
Q 017861 155 LFRLGLSSVELYQLA-GIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 206 (365)
Q Consensus 155 L~~Lg~d~iDl~~l~-~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 206 (365)
|.......=|+++.- ..-...++.++++.+++.| ++-|++++.+...+.+.
T Consensus 119 l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~G-a~tIaIT~~~~s~La~~ 170 (291)
T TIGR00274 119 LQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLG-ALTISIACNPKSAASEI 170 (291)
T ss_pred HHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 444456666888882 1224778999999999998 67899998876666554
No 292
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=22.21 E-value=4.8e+02 Score=24.87 Aligned_cols=97 Identities=7% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccc
Q 017861 149 AALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 227 (365)
Q Consensus 149 ~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 227 (365)
+...+.++.|.-++ ++.++-.+... ++.+.++++.-.|. +.|=|-++.+.+.++++. .-.+++|+..+.+
T Consensus 148 ~~Ai~~~~~L~e~~-~l~~iEqP~~~---~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~-----~a~dvi~ik~~~~ 218 (327)
T PRK02901 148 DEAVAAARALDADG-PLEYVEQPCAT---VEELAELRRRVGVPIAADESIRRAEDPLRVARA-----GAADVAVLKVAPL 218 (327)
T ss_pred HHHHHHHHHhhhcc-CceEEecCCCC---HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEEeCcchh
Q ss_pred cCCcccccHHHHHHHhCCeEEEeccccccc
Q 017861 228 YRKPEENGVKAACDELGITLIAYCPIAQGA 257 (365)
Q Consensus 228 ~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~ 257 (365)
---.. ++..|+++||.++..+.+..++
T Consensus 219 GGit~---~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 219 GGVRA---ALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred CCHHH---HHHHHHHcCCcEEEeCCcccHH
No 293
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=22.20 E-value=7.3e+02 Score=24.08 Aligned_cols=100 Identities=23% Similarity=0.211 Sum_probs=51.6
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEeC--CCC------ChHHHHHHH
Q 017861 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLA--GIW------GNEGFIDGL 181 (365)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~--~~~------~~~~~~~~l 181 (365)
|+.|-+++++...+.+.+=++|.|=+.. ..-.+.+..-+++.-++.+ +.++.++ ... ..+..+++|
T Consensus 72 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~---~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~al 145 (406)
T cd01967 72 EKKLKKAIKEAYERFPPKAIFVYSTCPT---GLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQSLGHHIANDAI 145 (406)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCch---hhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcccHHHHHHHHHH
Confidence 7777788876543332345777777643 2223334444444333444 5677772 211 134455555
Q ss_pred HHHH---------HcCCcCEEeecCCCHHHHHHHHHHHHhcCCc
Q 017861 182 GDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 216 (365)
Q Consensus 182 ~~l~---------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 216 (365)
.+.. +.+.|--||..++. ..+.++.+..+..|++
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gi~ 188 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNIG-GDAWVIKPLLEELGIR 188 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEeccccc-hhHHHHHHHHHHcCCE
Confidence 5443 23557788877653 3444444445555544
No 294
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.14 E-value=5.8e+02 Score=22.91 Aligned_cols=50 Identities=12% Similarity=0.001 Sum_probs=28.3
Q ss_pred cHHHHHHHhCCeEEEecccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017861 235 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 300 (365)
Q Consensus 235 ~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 300 (365)
..+++|++.|..++...+ |.... .....+.+....+.+..+.++|+++|+
T Consensus 89 ~~i~~a~~lga~~i~~~~---g~~~~-------------~~~~~~~~~~~~~~l~~l~~~a~~~Gv 138 (258)
T PRK09997 89 AAIRYARALGNKKINCLV---GKTPA-------------GFSSEQIHATLVENLRYAANMLMKEDI 138 (258)
T ss_pred HHHHHHHHhCCCEEEECC---CCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 488999999998775311 11100 001223345555666777777777664
No 295
>PLN02775 Probable dihydrodipicolinate reductase
Probab=21.96 E-value=3.6e+02 Score=25.29 Aligned_cols=58 Identities=16% Similarity=0.067 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHH
Q 017861 150 ALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 208 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~ 208 (365)
.+++.|..+.-+|.|++++. ....+-+.+.++...+.|+---+|.+.|+.++++++.+
T Consensus 67 dl~~~l~~~~~~~~~~VvID-FT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~ 124 (286)
T PLN02775 67 EREAVLSSVKAEYPNLIVVD-YTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVE 124 (286)
T ss_pred cHHHHHHHhhccCCCEEEEE-CCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHh
Confidence 34555655555678877773 23456778888888888888888999998887775533
No 296
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=21.91 E-value=4.6e+02 Score=23.67 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHHhCC--------------------------CceeEEEeCCC------CChHHHHHHHHHHHHcC
Q 017861 141 RLGRQSVLAALKDSLFRLGL--------------------------SSVELYQLAGI------WGNEGFIDGLGDAVEQG 188 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~--------------------------d~iDl~~l~~~------~~~~~~~~~l~~l~~~G 188 (365)
+.+...+++.+++.-++|+. ...+++.+..+ .....+.+.+..++.+|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 45666777777777777773 33456666222 11456788899999999
Q ss_pred CcCEEeecCCCHHHHHHHHHH
Q 017861 189 LVKAVGVSNYSEKRLRNAYEK 209 (365)
Q Consensus 189 ~ir~iGvS~~~~~~l~~~~~~ 209 (365)
|.+=+|+|..++++++.+.
T Consensus 184 --r~viFSSH~m~EvealCDr 202 (245)
T COG4555 184 --RAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred --cEEEEecccHHHHHHhhhe
Confidence 6788999998888888554
No 297
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=21.86 E-value=8e+02 Score=24.41 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=52.5
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEe--CCCCC------hHHHHHH
Q 017861 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQL--AGIWG------NEGFIDG 180 (365)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l--~~~~~------~~~~~~~ 180 (365)
|+-|-++|++...+.++ +-++|.|=+.. ..-.+.+..-+++.-++++ +.++.+ |+... .....++
T Consensus 102 ~~~L~~aI~~~~~~~~p~~~I~V~~tC~~---~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~a 175 (443)
T TIGR01862 102 EKKLKKLIHEAFTEFPLIKAISVYATCPT---GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQSKGHHIANIA 175 (443)
T ss_pred HHHHHHHHHHHHHhCCccceEEEECCChH---HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccchHHHHHHHH
Confidence 77788888776544434 56777777642 2233444444444434444 567777 33211 1222332
Q ss_pred -HHHHH--------HcCCcCEEeecCCCHHHHHHHHHHHHhcCCce
Q 017861 181 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 217 (365)
Q Consensus 181 -l~~l~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 217 (365)
++.++ +.++|--||-.++ +..++++.+.++..|+++
T Consensus 176 l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v 220 (443)
T TIGR01862 176 VINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQV 220 (443)
T ss_pred HHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeE
Confidence 33343 2467778885554 234444555555556554
No 298
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=21.69 E-value=4.1e+02 Score=24.54 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=51.0
Q ss_pred HHHHHHCCCCeeecccccCCC-------CCCCC--------C---chHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCC
Q 017861 81 FDTSLDNGITFFDTAEVYGSR-------ASFGA--------I---NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRL 142 (365)
Q Consensus 81 l~~A~~~Gin~~DTA~~Yg~g-------~s~~~--------~---~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~ 142 (365)
|...++.|||+||-=-.|..+ ...+. . ..-+.|.+||...+ .+=|+|.-+-.. ...
T Consensus 47 I~~QL~~GvR~LdLdv~~~~~~l~v~Hg~~~~~~~~~~~~~~~l~d~L~eI~~fL~~nP----~EvViL~~e~~~--~~~ 120 (267)
T cd08590 47 ITDQLDLGARFLELDVHWTTGDLRLCHGGDHGYLGVCSSEDRLFEDGLNEIADWLNANP----DEVVILYLEDHG--DGG 120 (267)
T ss_pred HHHHHhhCCcEEEEeeeeCCCCEEEEccCccccccccccccchHHHHHHHHHHHHHhCC----CCcEEEEEecCC--Ccc
Confidence 566779999999954444321 11000 0 11244556666654 344444444321 111
Q ss_pred CHHHHHHHHHHHHHHhCCCceeEEEeCCCCCh---HHHHHHHHHHHHcCCcCEE
Q 017861 143 GRQSVLAALKDSLFRLGLSSVELYQLAGIWGN---EGFIDGLGDAVEQGLVKAV 193 (365)
Q Consensus 143 ~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~---~~~~~~l~~l~~~G~ir~i 193 (365)
..+.+.+.++ +.|| |+++-|...+. ...|-.|+++++.||.--+
T Consensus 121 ~~~~l~~~l~---~~fG----d~ly~P~~~~~~~~~~~wpTL~em~~~GkrViv 167 (267)
T cd08590 121 KDDELNALLN---DAFG----DLLYTPSDCDDLQGLPNWPTKEDMLNSGKQVVL 167 (267)
T ss_pred cHHHHHHHHH---HHhC----CeEEcCCcccccccCCCCCCHHHHHhCCCEEEE
Confidence 1333443333 2355 55665533221 3457889999999986544
No 299
>PRK08392 hypothetical protein; Provisional
Probab=21.68 E-value=5.5e+02 Score=22.51 Aligned_cols=151 Identities=14% Similarity=0.222 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017861 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (365)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL 155 (365)
...+.++.|.+.|++.|=.+++...... ..-+..+-+ ++....+. +=+|++..-++.. ++. ....++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~---~~~~~y~~~-i~~l~~~~-~i~il~GiE~~~~-----~~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTP---SKFNAYINE-IRQWGEES-EIVVLAGIEANIT-----PNG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccch---hhHHHHHHH-HHHHhhcc-CceEEEeEEeeec-----CCc-chhHHHHH
Confidence 3567899999999999876666532110 000122211 11111110 1233333333221 111 12333344
Q ss_pred HHhCCCceeEEEe--CCCCC---hHHHHHHHHHHHHcCCcCEEeecC-------C-CHHHHHHHHHHHHhcCCceeeeee
Q 017861 156 FRLGLSSVELYQL--AGIWG---NEGFIDGLGDAVEQGLVKAVGVSN-------Y-SEKRLRNAYEKLKKRGIPLASNQV 222 (365)
Q Consensus 156 ~~Lg~d~iDl~~l--~~~~~---~~~~~~~l~~l~~~G~ir~iGvS~-------~-~~~~l~~~~~~~~~~~~~~~~~q~ 222 (365)
++ +|.+.. |.+.. .++..+.+.++.+.+.+.-+|=-. + ..+.++++++.+.+.|..+.+|-
T Consensus 84 ~~-----~D~vI~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt- 157 (215)
T PRK08392 84 KK-----LDYVIASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS- 157 (215)
T ss_pred hh-----CCEEEEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-
Confidence 42 465555 63322 346677788888899887766321 1 12567778888887877676663
Q ss_pred ecccccCCcccccHHHHHHHhCCeEE
Q 017861 223 NYSLIYRKPEENGVKAACDELGITLI 248 (365)
Q Consensus 223 ~~n~~~~~~~~~~~~~~~~~~gi~v~ 248 (365)
.+. .+.. .+++.|++.|+.++
T Consensus 158 ~~~----~p~~-~~l~~~~~~G~~~~ 178 (215)
T PRK08392 158 RYR----VPDL-EFIRECIKRGIKLT 178 (215)
T ss_pred CCC----CCCH-HHHHHHHHcCCEEE
Confidence 121 1222 48999999998653
No 300
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=21.66 E-value=72 Score=26.12 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.2
Q ss_pred ccHHHHHHHhCCeEEEeccccc
Q 017861 234 NGVKAACDELGITLIAYCPIAQ 255 (365)
Q Consensus 234 ~~~~~~~~~~gi~v~a~~~l~~ 255 (365)
.++++.|+++||.|++|-.+..
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeec
Confidence 3699999999999999988773
No 301
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=21.65 E-value=7.9e+02 Score=24.29 Aligned_cols=40 Identities=8% Similarity=0.041 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHcCCcC-----EEeecCCCHHHHHHHHHHHHhc
Q 017861 174 NEGFIDGLGDAVEQGLVK-----AVGVSNYSEKRLRNAYEKLKKR 213 (365)
Q Consensus 174 ~~~~~~~l~~l~~~G~ir-----~iGvS~~~~~~l~~~~~~~~~~ 213 (365)
.+++.++++.+++.|.-- -+|+-+.+.+.+++.++.+...
T Consensus 176 ~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l 220 (430)
T PRK08208 176 RADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVY 220 (430)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhC
Confidence 456666666666666311 2455555666666555555433
No 302
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=21.57 E-value=6.2e+02 Score=23.02 Aligned_cols=97 Identities=11% Similarity=0.192 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHCC-CCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCC--HHHHHH
Q 017861 73 KMKAAKAAFDTSLDNG-ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLG--RQSVLA 149 (365)
Q Consensus 73 ~~~~~~~~l~~A~~~G-in~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~--~~~i~~ 149 (365)
++++-.++++.+++.| +.++|.=-..+ ++.+.+.++..... .-+++++-.- +..+ .+.+..
T Consensus 93 ~~~~~~~ll~~~~~~~~~d~vDiEl~~~----------~~~~~~l~~~~~~~--~~kvI~S~H~----f~~tP~~~~l~~ 156 (253)
T PRK02412 93 SDEEYLALIKAVIKSGLPDYIDVELFSG----------KDVVKEMVAFAHEH--GVKVVLSYHD----FEKTPPKEEIVE 156 (253)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeccCC----------hHHHHHHHHHHHHc--CCEEEEeeCC----CCCCcCHHHHHH
Confidence 4567778889999998 88888733222 44444433321100 2345554432 2333 355554
Q ss_pred HHHHHHHHhCCCceeEEEeCC-CCChHHHHHHHHHHHH
Q 017861 150 ALKDSLFRLGLSSVELYQLAG-IWGNEGFIDGLGDAVE 186 (365)
Q Consensus 150 ~l~~SL~~Lg~d~iDl~~l~~-~~~~~~~~~~l~~l~~ 186 (365)
.++ -.+++|-|.+-+...+. ..+...++....++++
T Consensus 157 ~~~-~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~ 193 (253)
T PRK02412 157 RLR-KMESLGADIVKIAVMPQSEQDVLTLLNATREMKE 193 (253)
T ss_pred HHH-HHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 444 36667766666666542 2233444444444444
No 303
>PRK08445 hypothetical protein; Provisional
Probab=21.56 E-value=7.3e+02 Score=23.84 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=17.1
Q ss_pred cHHHHHHHhCCeEEEecccccc
Q 017861 235 GVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 235 ~~~~~~~~~gi~v~a~~~l~~G 256 (365)
+.+..+++.|+.+.+..-+|.|
T Consensus 186 ~~i~~a~~~Gi~~~sg~i~G~~ 207 (348)
T PRK08445 186 EVHRQAHLIGMKSTATMMFGTV 207 (348)
T ss_pred HHHHHHHHcCCeeeeEEEecCC
Confidence 4788888889998887666654
No 304
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.52 E-value=2.4e+02 Score=26.27 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhcCCceeeeeeecc--c-------------ccCC----cccccHHHHHHHhCCeEEEec
Q 017861 198 YSEKRLRNAYEKLKKRGIPLASNQVNYS--L-------------IYRK----PEENGVKAACDELGITLIAYC 251 (365)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~q~~~n--~-------------~~~~----~~~~~~~~~~~~~gi~v~a~~ 251 (365)
++.+++.++++.+++.++|++++.+... - +.-+ +...++++..+++|+.++.+.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 4678888999999999999999877432 1 1111 112369999999999988754
No 305
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=21.46 E-value=7.5e+02 Score=23.95 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHHcCCcCEEeec-------CCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccc-------cHH
Q 017861 172 WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEEN-------GVK 237 (365)
Q Consensus 172 ~~~~~~~~~l~~l~~~G~ir~iGvS-------~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~-------~~~ 237 (365)
++.++.+++.+...+... +.|-+- |.+.++.+++.+.++ +++..++-++||+......+. ...
T Consensus 236 ~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~--~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~ 312 (349)
T COG0820 236 YPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLK--GIPCKVNLIPYNPVPGSDYERSSKERIRKFL 312 (349)
T ss_pred CCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhc--CCCceEEEeecCCCCCCCccCCcHHHHHHHH
Confidence 457788888888776654 444332 556677777766643 356799999999987554321 255
Q ss_pred HHHHHhCCeEEEeccccccc
Q 017861 238 AACDELGITLIAYCPIAQGA 257 (365)
Q Consensus 238 ~~~~~~gi~v~a~~~l~~G~ 257 (365)
+...++||.+.....-+..+
T Consensus 313 ~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 313 KILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred HHHHhCCeeEEecccccccc
Confidence 55566788888877766543
No 306
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=21.36 E-value=6.7e+02 Score=25.57 Aligned_cols=94 Identities=10% Similarity=-0.088 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeec
Q 017861 145 QSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 224 (365)
Q Consensus 145 ~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 224 (365)
+.+.+..++. .+-|.|.||+=.-......+.+...++.+++...+ -|.|-+++++.++++++. |.. -+|-+
T Consensus 165 ~~i~~~A~~~-~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~~-pISIDT~~~~v~eaAL~a----GAd-iINsV-- 235 (499)
T TIGR00284 165 DGIEGLAARM-ERDGADMVALGTGSFDDDPDVVKEKVKTALDALDS-PVIADTPTLDELYEALKA----GAS-GVIMP-- 235 (499)
T ss_pred HHHHHHHHHH-HHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCCC-cEEEeCCCHHHHHHHHHc----CCC-EEEEC--
Confidence 4444444433 46688999987664322345677788888776333 489999999999998775 222 22221
Q ss_pred ccccCCcccccHHHHHHHhCCeEEEec
Q 017861 225 SLIYRKPEENGVKAACDELGITLIAYC 251 (365)
Q Consensus 225 n~~~~~~~~~~~~~~~~~~gi~v~a~~ 251 (365)
+-. +.. ++++.+++.|+.++.+.
T Consensus 236 s~~--~~d--~~~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 236 DVE--NAV--ELASEKKLPEDAFVVVP 258 (499)
T ss_pred Ccc--chh--HHHHHHHHcCCeEEEEc
Confidence 111 111 37788888888887764
No 307
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=21.33 E-value=3.2e+02 Score=27.20 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCH-----HHHHHHHHHHHhcCC
Q 017861 149 AALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE-----KRLRNAYEKLKKRGI 215 (365)
Q Consensus 149 ~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~-----~~l~~~~~~~~~~~~ 215 (365)
.++..+++.|..+.+++-+||-.......++.+++..+. ++|.+++...+. .-++++...|+..++
T Consensus 142 ~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~-~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v 212 (428)
T KOG1549|consen 142 PCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRS-KTRLVSIMHVNNEIGVLQPVKEIVKICREEGV 212 (428)
T ss_pred cchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCC-CceEEEEEecccCccccccHHHHHHHhCcCCc
Confidence 456666777777777777775433333344455555544 677777654321 224555555655554
No 308
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.27 E-value=6.9e+02 Score=23.59 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=64.3
Q ss_pred HHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC-CCCCCCHHHHHHHHHHHHH
Q 017861 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA-LPWRLGRQSVLAALKDSLF 156 (365)
Q Consensus 78 ~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~-~~~~~~~~~i~~~l~~SL~ 156 (365)
.++...|..+|+.|+-++..+..-+. .+.|.++++. +.--||..+... ..|.++++ +.++..-.
T Consensus 165 kd~~~Ia~a~g~~YVA~~~~~~~~~l------~~~i~~A~~~------~Gps~I~v~sPC~~~~~~~~~---~~~~~~kl 229 (299)
T PRK11865 165 KNMPLIMAAHGIPYVATASIGYPEDF------MEKVKKAKEV------EGPAYIQVLQPCPTGWGFPPE---KTIEIGRL 229 (299)
T ss_pred CCHHHHHHHcCCCEEEEEeCCCHHHH------HHHHHHHHhC------CCCEEEEEECCCCCCCCCCHH---HHHHHHHH
Confidence 45666777889999999887743222 4455555432 234455555433 23555665 34444444
Q ss_pred HhCCCceeEEEe-CCCC-----ChH---H-HHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHH
Q 017861 157 RLGLSSVELYQL-AGIW-----GNE---G-FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 211 (365)
Q Consensus 157 ~Lg~d~iDl~~l-~~~~-----~~~---~-~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 211 (365)
...+.|.=||=. |... +.. + ....-+-|+.+|+.+++ ++++++++.+..+
T Consensus 230 Avetg~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L-----~~~~~~~~q~~v~ 289 (299)
T PRK11865 230 AVETGYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKHL-----TEEDIEILQKYID 289 (299)
T ss_pred HHhcCceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhcC-----CHHHHHHHHHHHH
Confidence 455777777777 3211 000 0 11223446779999988 5677777666543
No 309
>PRK14847 hypothetical protein; Provisional
Probab=21.26 E-value=7e+02 Score=23.96 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCC----cCEEeecCCCHHHHHHHHHHHHhcCCce
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGIPL 217 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 217 (365)
++.+ =+-.+-+.|.++|+|.|.+=+- . -.++-.+++.++.+.++ ++-.+++....+.++..++.....+...
T Consensus 51 fs~e-eKl~IA~~L~~lGVd~IEvG~P-a--~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~ 126 (333)
T PRK14847 51 MDGA-RKLRLFEQLVAVGLKEIEVAFP-S--ASQTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPRAI 126 (333)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEeeCC-C--CCHHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCE
Confidence 3444 3456777899999888775432 1 13344677777777764 5667777777888888877644322222
Q ss_pred eeeeeecccccC------Cccc-----ccHHHHHHHhCC---e---EEEecccc
Q 017861 218 ASNQVNYSLIYR------KPEE-----NGVKAACDELGI---T---LIAYCPIA 254 (365)
Q Consensus 218 ~~~q~~~n~~~~------~~~~-----~~~~~~~~~~gi---~---v~a~~~l~ 254 (365)
..+-++.|.++. ..++ .+.+.++++++. + .+.+++-.
T Consensus 127 Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ED 180 (333)
T PRK14847 127 VHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPET 180 (333)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeec
Confidence 223333333221 1111 246778888854 2 36666654
No 310
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=21.24 E-value=2.2e+02 Score=26.98 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCceeeeeeecccc----------cCC--cccccHHHHHHHhCCeEEEec-cc
Q 017861 199 SEKRLRNAYEKLKKRGIPLASNQVNYSLI----------YRK--PEENGVKAACDELGITLIAYC-PI 253 (365)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~----------~~~--~~~~~~~~~~~~~gi~v~a~~-~l 253 (365)
+.+++.++++.+++.++|++++.+.+.-. ++. +...++++.++++|+.++.+. |.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~ 89 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPT 89 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCC
Confidence 66778888888888888888887764211 111 112369999999999987753 44
No 311
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=21.12 E-value=2.6e+02 Score=24.46 Aligned_cols=71 Identities=20% Similarity=0.177 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCC
Q 017861 173 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 245 (365)
Q Consensus 173 ~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi 245 (365)
..+++.+.|+.|++.|.--.| +||.....++..++...-.. .|+.+..........+....+...|++.|+
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 163 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTMFDLRD-YFDALASAEKLPYSKPHPEVYLNCAAKLGV 163 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHhCcchh-cccEEEEcccCCCCCCCHHHHHHHHHHcCC
Confidence 466788899999999854444 77766666666655432111 244443333332323322236666676666
No 312
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=21.11 E-value=7.1e+02 Score=24.78 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=11.2
Q ss_pred CCeEEEecccccccccC
Q 017861 244 GITLIAYCPIAQGALTG 260 (365)
Q Consensus 244 gi~v~a~~~l~~G~L~~ 260 (365)
+..+++.++-+.|.+.+
T Consensus 316 ~~~~lG~G~gA~s~~~~ 332 (455)
T TIGR00538 316 DTDLLGFGVTSISMLGD 332 (455)
T ss_pred CCcEEEeCcceeeCCCC
Confidence 34577777777776654
No 313
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=21.07 E-value=2e+02 Score=17.41 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHH
Q 017861 286 PLLNRIKELGENYSKTSTQVGL 307 (365)
Q Consensus 286 ~~~~~l~~ia~~~~~s~~qlal 307 (365)
+..+.+.++|++.|.|.+++.-
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHH
Confidence 3456899999999999988643
No 314
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=21.06 E-value=2.9e+02 Score=27.02 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEecCCC--------CCCCCCH----HHHHHHHHHHHHHhCCCceeEEEe----CCCC
Q 017861 109 SETLLGRFIKERKQRDPEVEVTVATKFAA--------LPWRLGR----QSVLAALKDSLFRLGLSSVELYQL----AGIW 172 (365)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~~~I~tK~~~--------~~~~~~~----~~i~~~l~~SL~~Lg~d~iDl~~l----~~~~ 172 (365)
++..|.+.++... ..=+||-||+-. .|..++. +.|++.+.+.|++-|+....+|++ +..+
T Consensus 129 ndv~La~~i~~~g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~y 204 (376)
T PF05049_consen 129 NDVQLAKEIQRMG----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKY 204 (376)
T ss_dssp HHHHHHHHHHHTT-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTST
T ss_pred hhHHHHHHHHHcC----CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccC
Confidence 3778889898875 345678999853 1233443 467888999999999999999999 2334
Q ss_pred ChHHHHHHHH
Q 017861 173 GNEGFIDGLG 182 (365)
Q Consensus 173 ~~~~~~~~l~ 182 (365)
+...+.++|+
T Consensus 205 DFp~L~~tL~ 214 (376)
T PF05049_consen 205 DFPKLEETLE 214 (376)
T ss_dssp THHHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 5555555554
No 315
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=21.01 E-value=5.7e+02 Score=22.95 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEeccccc
Q 017861 198 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 255 (365)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~ 255 (365)
.++.++.++.+.++..++++-+....++. .-.-..+++.|+.++.-.|++.
T Consensus 183 ps~~~l~~l~~~ik~~~v~~i~~e~~~~~-------~~~~~la~~~g~~vv~ld~l~~ 233 (256)
T PF01297_consen 183 PSPKDLAELIKLIKENKVKCIFTEPQFSS-------KLAEALAKETGVKVVYLDPLGG 233 (256)
T ss_dssp S-HHHHHHHHHHHHHTT-SEEEEETTS-T-------HHHHHHHHCCT-EEEESSTTCS
T ss_pred CCHHHHHHHHHHhhhcCCcEEEecCCCCh-------HHHHHHHHHcCCcEEEeCCCcC
Confidence 36678888888877777665554333221 1133446778888888888843
No 316
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=20.99 E-value=89 Score=27.46 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCC
Q 017861 177 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 245 (365)
Q Consensus 177 ~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi 245 (365)
.++.|+...-+|+|+.+ ++..+..+++.....+..-.+-|+-.++=-..-.-..++..|+++|.
T Consensus 4 Fle~Lep~Il~~~i~~l-----pp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~L 67 (196)
T PF12816_consen 4 FLECLEPFILSGKIKSL-----PPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGL 67 (196)
T ss_pred HHHHHHHHHHcCCCCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCC
Confidence 57889999999999954 66778887777655542222223333321111112248999999987
No 317
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.98 E-value=2.6e+02 Score=26.83 Aligned_cols=52 Identities=17% Similarity=0.411 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhcCCceeeeeee---------------c-----------cccc-----CCcccccHHHHHHHhCCeE
Q 017861 199 SEKRLRNAYEKLKKRGIPLASNQVN---------------Y-----------SLIY-----RKPEENGVKAACDELGITL 247 (365)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~q~~---------------~-----------n~~~-----~~~~~~~~~~~~~~~gi~v 247 (365)
+.+++.++++.+++.++|++++.+. | +... +-+...++++..+++|+.+
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv 101 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKV 101 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEE
Confidence 5677888888888888888887663 1 1110 0012236999999999999
Q ss_pred EEe
Q 017861 248 IAY 250 (365)
Q Consensus 248 ~a~ 250 (365)
+.+
T Consensus 102 ~l~ 104 (340)
T cd06597 102 LLW 104 (340)
T ss_pred EEE
Confidence 753
No 318
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=20.97 E-value=2.4e+02 Score=26.74 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHhcCCceeeeeee-cc--------------c-ccCC--cccccHHHHHHHhCCeEEEe
Q 017861 199 SEKRLRNAYEKLKKRGIPLASNQVN-YS--------------L-IYRK--PEENGVKAACDELGITLIAY 250 (365)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~q~~-~n--------------~-~~~~--~~~~~~~~~~~~~gi~v~a~ 250 (365)
+.+++.++++.+++.++|++++.+. ++ . +++. +...++++..+++|+.++.+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~ 90 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTY 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEE
Confidence 7788888888888899999988764 10 0 1111 11236999999999998753
No 319
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.84 E-value=1.8e+02 Score=25.60 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCC-CHHHHHHHHHHHHhcCCceeeeee
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQV 222 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~ 222 (365)
.+.. ..+-+.|-+-|+..+.+=+ ..++.++.++.++++-.=-.||..+. +.++++++++.. -.|-+
T Consensus 19 ~~~a-~~~~~al~~gGi~~iEiT~-----~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG----A~Fiv--- 85 (196)
T PF01081_consen 19 PEDA-VPIAEALIEGGIRAIEITL-----RTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG----AQFIV--- 85 (196)
T ss_dssp GGGH-HHHHHHHHHTT--EEEEET-----TSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-----SEEE---
T ss_pred HHHH-HHHHHHHHHCCCCEEEEec-----CCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC----CCEEE---
Confidence 4444 3344455566655444322 22334555555554422256999886 788888887762 33432
Q ss_pred ecccccCCcccccHHHHHHHhCCeEEE
Q 017861 223 NYSLIYRKPEENGVKAACDELGITLIA 249 (365)
Q Consensus 223 ~~n~~~~~~~~~~~~~~~~~~gi~v~a 249 (365)
++ .. ..+++++|+++|+.++.
T Consensus 86 --SP---~~-~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 86 --SP---GF-DPEVIEYAREYGIPYIP 106 (196)
T ss_dssp --ES---S---HHHHHHHHHHTSEEEE
T ss_pred --CC---CC-CHHHHHHHHHcCCcccC
Confidence 22 11 22599999999999986
No 320
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=20.80 E-value=4.7e+02 Score=28.79 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCC--------------------------CceeEEEeCCC---CC---hHHHHHHHHHHHHc
Q 017861 140 WRLGRQSVLAALKDSLFRLGL--------------------------SSVELYQLAGI---WG---NEGFIDGLGDAVEQ 187 (365)
Q Consensus 140 ~~~~~~~i~~~l~~SL~~Lg~--------------------------d~iDl~~l~~~---~~---~~~~~~~l~~l~~~ 187 (365)
.+..+.++.+.++.+|+.++. -...+++|.++ .| -..+|+.+.++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 345677899999999998883 34566666322 11 35799999999999
Q ss_pred CCcCEEeecCCCHHHHHHHHHH
Q 017861 188 GLVKAVGVSNYSEKRLRNAYEK 209 (365)
Q Consensus 188 G~ir~iGvS~~~~~~l~~~~~~ 209 (365)
|+ ++=+.+|+-++.+.+...
T Consensus 748 g~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhhh
Confidence 97 899999999999988665
No 321
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=20.77 E-value=97 Score=23.89 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcEEeecCCCHHHHHHHHhhh-------CCCCCHHHHHHHHHhh
Q 017861 285 QPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGAL-------GWRLTDEEVNELRSMA 351 (365)
Q Consensus 285 ~~~~~~l~~ia~~~~~s~~qlal~~~l~~~~v~~i~g~~~~~~l~en~~a~-------~~~L~~e~~~~l~~~~ 351 (365)
...++++..+++..|..+..-. -..+.+|.....+|..+.+.+.+.+... +..||+.+...|++..
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~-~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~ 79 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTV-VQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKAL 79 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEE-EecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHH
Confidence 3456788889988886654311 1122234447899999999999988765 3489999999999887
No 322
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.75 E-value=2.9e+02 Score=25.14 Aligned_cols=74 Identities=11% Similarity=-0.012 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeeeeeecccccCCcccccHHHHHHHhCCeEEEecccccc
Q 017861 177 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 177 ~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
-++.+.++. .+.=-..|=|-++.+.+..+++. ..++++|+.....---.....+.+.|+++|+.++..+-+..+
T Consensus 166 d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~-----~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 166 DLAELRRLA-AGVPIALDESLRRLDDPLALAAA-----GALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHHhh-cCCCeeeCCccccccCHHHHHhc-----CCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 355555555 23222455555566666666554 236777776553221111124889999999999887555433
No 323
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=20.73 E-value=2.6e+02 Score=24.19 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=44.0
Q ss_pred HHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCce
Q 017861 84 SLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSV 163 (365)
Q Consensus 84 A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~i 163 (365)
+...|..++--+ +-|++.- |..+.+.|.+.+ .++++. .++. ..+++.+++.+...++.+.-.+.
T Consensus 29 aR~l~~~~iNLG-fsG~~~l------e~~~a~~ia~~~-----a~~~~l-d~~~---N~~~~~~~~~~~~fv~~iR~~hP 92 (178)
T PF14606_consen 29 ARRLGLDVINLG-FSGNGKL------EPEVADLIAEID-----ADLIVL-DCGP---NMSPEEFRERLDGFVKTIREAHP 92 (178)
T ss_dssp HHHHT-EEEEEE--TCCCS--------HHHHHHHHHS-------SEEEE-EESH---HCCTTTHHHHHHHHHHHHHTT-S
T ss_pred HHHcCCCeEeee-ecCcccc------CHHHHHHHhcCC-----CCEEEE-Eeec---CCCHHHHHHHHHHHHHHHHHhCC
Confidence 445577777432 1244444 999999999975 455544 4443 37899999999999999988774
Q ss_pred e--EEEe
Q 017861 164 E--LYQL 168 (365)
Q Consensus 164 D--l~~l 168 (365)
| ++++
T Consensus 93 ~tPIllv 99 (178)
T PF14606_consen 93 DTPILLV 99 (178)
T ss_dssp SS-EEEE
T ss_pred CCCEEEE
Confidence 4 5555
No 324
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=20.73 E-value=4e+02 Score=24.32 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEeCCC----CChHHHHHHHHHHHHcCCcC
Q 017861 141 RLGRQSVLAALKDSLFRLGLSSVELYQLAGI----WGNEGFIDGLGDAVEQGLVK 191 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~~----~~~~~~~~~l~~l~~~G~ir 191 (365)
.++.+...+..+-..+-+++|+|-+=.++|. .+..+++++-|.|+++|-+-
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV 133 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE
Confidence 4678877788888899999999998888443 35789999999999999553
No 325
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.60 E-value=6.3e+02 Score=22.77 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHHHHhcCCceeee
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 220 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 220 (365)
...+...+++.++.+|. ++++.....+.+...+.++.+.+. ++..|-+...........++.+...++|+.++
T Consensus 14 ~~~~~~gi~~~a~~~g~---~~~~~~~~~~~~~~~~~i~~~~~~-~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 14 WIRDRPNFEAALKELGA---EVIVQNANGDPAKQISQIENMIAK-GVDVLVIAPVDGEALASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHHHHHHHHcCC---EEEEECCCCCHHHHHHHHHHHHHc-CCCEEEEecCChhhHHHHHHHHHHCCCCEEEE
Confidence 56677888888888884 455553223455666777777755 57777776654444444444455555665444
No 326
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.59 E-value=5.2e+02 Score=24.30 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEe--C-CC---CChHH---HHHHHHHHHHcCCcC-EEeecCCCHHHHHHHHHHH
Q 017861 141 RLGRQSVLAALKDSLFRLGLSSVELYQL--A-GI---WGNEG---FIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKL 210 (365)
Q Consensus 141 ~~~~~~i~~~l~~SL~~Lg~d~iDl~~l--~-~~---~~~~~---~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~ 210 (365)
..+.+.+++.++..+. .| +|=+++ . .. ...+| +++...+.. .|++. ..|++..+..+..++.+.+
T Consensus 25 ~iD~~~l~~lv~~li~-~G---v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 25 TVDLDETARLVERLIA-AG---VDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEeccCCHHHHHHHHHHH
Confidence 4567777777766665 45 455555 1 11 22444 444444433 45543 6799988888877777777
Q ss_pred HhcCCceeeeeee-cccccCCcccccHHHHH----HHh-CCeEEEec
Q 017861 211 KKRGIPLASNQVN-YSLIYRKPEENGVKAAC----DEL-GITLIAYC 251 (365)
Q Consensus 211 ~~~~~~~~~~q~~-~n~~~~~~~~~~~~~~~----~~~-gi~v~a~~ 251 (365)
...|..-..+..+ |....+ .+++++. +.- ++.++.|.
T Consensus 100 ~~~Gad~vlv~~P~y~~~~~----~~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLDV----DTAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred HHhCCCEEEECCCcCCCCCH----HHHHHHHHHHHHhCCCCcEEEEc
Confidence 7777543333333 333322 2355544 445 58999984
No 327
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=20.51 E-value=4.2e+02 Score=20.61 Aligned_cols=73 Identities=12% Similarity=0.027 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHHHHHHCCCC-eeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 017861 70 DDRKMKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (365)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin-~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (365)
+++++++..+-|++.+..|.+ .++-++. .+ +|...+-.-|.... ...+.+.|.
T Consensus 10 p~lt~~~i~~QI~yll~qG~~~~lE~ad~---------------------~~----~~~~yW~mwklP~f-~~~d~~~Vl 63 (99)
T cd03527 10 PPLTDEQIAKQIDYIISNGWAPCLEFTEP---------------------EH----YDNRYWTMWKLPMF-GCTDPAQVL 63 (99)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcccC---------------------CC----CCCCEEeeccCCCC-CCCCHHHHH
Confidence 346789999999999999987 2322110 11 25677777777442 245788899
Q ss_pred HHHHHHHHHhCCCceeEEEe
Q 017861 149 AALKDSLFRLGLSSVELYQL 168 (365)
Q Consensus 149 ~~l~~SL~~Lg~d~iDl~~l 168 (365)
..|++-++.-.-+||=|+=+
T Consensus 64 ~ei~~C~~~~p~~YVRliG~ 83 (99)
T cd03527 64 REIEACRKAYPDHYVRVVGF 83 (99)
T ss_pred HHHHHHHHHCCCCeEEEEEE
Confidence 99999999888888877666
No 328
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=20.39 E-value=6.9e+02 Score=23.11 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 017861 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (365)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (365)
++++...++++.|-++||. -...++.|+... ...+-+...-. .+.-...+...+
T Consensus 33 vs~~tr~~V~~~a~elgY~-------------------p~~~a~~l~~~~----~~~Igvv~~~~---~~~~~~~i~~gi 86 (342)
T PRK10014 33 ISTATGERVNQAIEELGFV-------------------RNRQASALRGGQ----SGVIGLIVRDL---SAPFYAELTAGL 86 (342)
T ss_pred CCHHHHHHHHHHHHHhCCC-------------------cCHHHHhhccCC----CCEEEEEeCCC---ccchHHHHHHHH
Confidence 6678888999999999985 112334555432 23344443321 223356688888
Q ss_pred HHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecC
Q 017861 152 KDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSN 197 (365)
Q Consensus 152 ~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 197 (365)
++.++..|. +++++....+.+...+.++.+.+.+ +..|=+..
T Consensus 87 ~~~a~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~~-vdgiIi~~ 128 (342)
T PRK10014 87 TEALEAQGR---MVFLLQGGKDGEQLAQRFSTLLNQG-VDGVVIAG 128 (342)
T ss_pred HHHHHHcCC---EEEEEeCCCCHHHHHHHHHHHHhCC-CCEEEEeC
Confidence 888888873 4444432223444556666666544 55555543
No 329
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=20.38 E-value=7.1e+02 Score=23.23 Aligned_cols=110 Identities=14% Similarity=0.015 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHHh---CCCceeEEEeCCC-----CChH----HHHHHHHHHHHcCCcCE-Eeec---CCCHHHHHH
Q 017861 142 LGRQSVLAALKDSLFRL---GLSSVELYQLAGI-----WGNE----GFIDGLGDAVEQGLVKA-VGVS---NYSEKRLRN 205 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~L---g~d~iDl~~l~~~-----~~~~----~~~~~l~~l~~~G~ir~-iGvS---~~~~~~l~~ 205 (365)
.+++.++......++.+ |+.|+|+.+-|.. ...+ .+.+++++.+++-.|+. +.++ ..+++.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Confidence 45777777777666555 8889998765531 1223 34667777766644442 3322 235566666
Q ss_pred HHHHHHhcCCceeeeeeeccccc--CC-cccccHHHHHHHhCCeEEEecc
Q 017861 206 AYEKLKKRGIPLASNQVNYSLIY--RK-PEENGVKAACDELGITLIAYCP 252 (365)
Q Consensus 206 ~~~~~~~~~~~~~~~q~~~n~~~--~~-~~~~~~~~~~~~~gi~v~a~~~ 252 (365)
.++.+.+.... .++-+.+..-. .. ..-..+++.|+++|+.+..+..
T Consensus 146 ~~~~~~~~~~~-~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~ 194 (325)
T cd01320 146 TLELALKYRDK-GVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAG 194 (325)
T ss_pred HHHHHHhccCC-CEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCC
Confidence 66655432211 12222222111 11 1112588999999999887743
No 330
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=20.35 E-value=4.2e+02 Score=24.91 Aligned_cols=47 Identities=17% Similarity=0.039 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEe---CCCCChHHHHHHHHHHHHcCCcC
Q 017861 144 RQSVLAALKDSLFRLGLSSVELYQL---AGIWGNEGFIDGLGDAVEQGLVK 191 (365)
Q Consensus 144 ~~~i~~~l~~SL~~Lg~d~iDl~~l---~~~~~~~~~~~~l~~l~~~G~ir 191 (365)
.+...+.+.+.+++||+. +|.... ++..-.+-+...+.+|.++|.|-
T Consensus 68 ~~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy 117 (314)
T cd00812 68 TEYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAY 117 (314)
T ss_pred HHHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 356778889999999985 574222 22211345666788999999884
No 331
>PRK09234 fbiC FO synthase; Reviewed
Probab=20.35 E-value=9.9e+02 Score=26.21 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEe---CCC-C--------------ChHHHHHHHHHHHH-cCCcCEEeecCCCHHH
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQL---AGI-W--------------GNEGFIDGLGDAVE-QGLVKAVGVSNYSEKR 202 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l---~~~-~--------------~~~~~~~~l~~l~~-~G~ir~iGvS~~~~~~ 202 (365)
.+++.|.+.+++. .++|...+ +++. |+. + ..+-+.+.++.+++ .|..-++-+-.++.++
T Consensus 102 ls~eEIl~~a~~~-~~~G~~e~-l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G~ls~~E 179 (843)
T PRK09234 102 LSPDEVLDIARAG-AAAGCKEA-LFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVMSWSE 179 (843)
T ss_pred CCHHHHHHHHHHH-HHCCCCEE-EEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeCCCCHHH
Confidence 5788888888874 56887763 3333 331 1 13444445555665 4777777777788899
Q ss_pred HHHHHHHHHhcCCceee-eeeec------ccccCCc---ccccHHHHHHHhCCeEEEecccccc
Q 017861 203 LRNAYEKLKKRGIPLAS-NQVNY------SLIYRKP---EENGVKAACDELGITLIAYCPIAQG 256 (365)
Q Consensus 203 l~~~~~~~~~~~~~~~~-~q~~~------n~~~~~~---~~~~~~~~~~~~gi~v~a~~~l~~G 256 (365)
+..+.+.....+..+.. ....| +...+.. ..-+.++.+++.||.+.+-.-+|.|
T Consensus 180 ~~~Lk~~g~s~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~GiG 243 (843)
T PRK09234 180 LARLKPVAPSMGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGIG 243 (843)
T ss_pred HHHHHHhcCcCCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEECC
Confidence 88876653222222211 11111 1111111 1225888999999997765444443
No 332
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.31 E-value=2.4e+02 Score=26.67 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhcCCceeeeeeecccc--------------cCC--cccccHHHHHHHhCCeEEEec
Q 017861 199 SEKRLRNAYEKLKKRGIPLASNQVNYSLI--------------YRK--PEENGVKAACDELGITLIAYC 251 (365)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~--------------~~~--~~~~~~~~~~~~~gi~v~a~~ 251 (365)
+.+++.++++.+++.++|++++.+...-. ++. +...++++..+++|+.++.+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v 90 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVIT 90 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEE
Confidence 56778888888888888888887753211 111 112369999999999988753
No 333
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=20.31 E-value=5e+02 Score=26.39 Aligned_cols=122 Identities=12% Similarity=0.207 Sum_probs=73.4
Q ss_pred HHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEe---CCCCChHHHHHHHHHHHHc
Q 017861 111 TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQL---AGIWGNEGFIDGLGDAVEQ 187 (365)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg~d~iDl~~l---~~~~~~~~~~~~l~~l~~~ 187 (365)
+-+|.+|+.+ .+++|+-.+.. .+.....+..-+.+-+++-++..=-+.+= ....+.......+.++++.
T Consensus 342 ~dlG~~L~~~------~~l~VsINl~a--~Dl~s~rli~~~~~~l~~~~v~pqQI~lElTER~f~D~~~~~~iI~r~Rea 413 (524)
T COG4943 342 RDLGDLLRQH------RDLHVSINLSA--SDLASPRLIDRLNRKLAQYQVRPQQIALELTERTFADPKKMTPIILRLREA 413 (524)
T ss_pred HHhHHHHHhC------cceEEEEeeee--hhhcCchHHHHHHHHHHhcCcChHHheeehhhhhhcCchhhhHHHHHHHhc
Confidence 5578888775 47778777755 45556667777777777776532222111 2234556677889999999
Q ss_pred CCcCEEeecCCC--HHHHHHHHHHHHhcCCceeeeeeecccccCC--------cccccHHHHHHHhCCeEEE
Q 017861 188 GLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRK--------PEENGVKAACDELGITLIA 249 (365)
Q Consensus 188 G~ir~iGvS~~~--~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~--------~~~~~~~~~~~~~gi~v~a 249 (365)
|. .|=+..|. ...|..+.+ .++|+.-+.=+..+.= .. ..+++.++++++.+++
T Consensus 414 G~--~IyIDDFGTGYSnL~YLq~------L~VDaLKIDKsFvdtlg~~~a~~~I~-~hII~MAk~L~L~iVa 476 (524)
T COG4943 414 GH--EIYIDDFGTGYSNLHYLQS------LPVDALKIDKSFVDTLGTDSASHLIA-PHIIEMAKSLGLKIVA 476 (524)
T ss_pred CC--eEEEccCcCcchhHHHHhh------CCccceeccHHHHHhhccCcccchhH-HHHHHHHHHcCCcEEe
Confidence 94 44444442 233433333 2455555544433311 11 1489999999999998
No 334
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.28 E-value=4.9e+02 Score=21.35 Aligned_cols=108 Identities=15% Similarity=0.258 Sum_probs=63.3
Q ss_pred HHHHHHHHHHH-HCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 017861 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (365)
Q Consensus 75 ~~~~~~l~~A~-~~Gin~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (365)
+....++..++ +.|+..+|....=.. |+++-.+.+... +=+-+|+-.+ .+... .+.+.+
T Consensus 15 diGk~iv~~~l~~~GfeVi~LG~~v~~---------e~~v~aa~~~~a-----diVglS~l~~-----~~~~~-~~~~~~ 74 (134)
T TIGR01501 15 AVGNKILDHAFTNAGFNVVNLGVLSPQ---------EEFIKAAIETKA-----DAILVSSLYG-----HGEID-CKGLRQ 74 (134)
T ss_pred hHhHHHHHHHHHHCCCEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEecccc-----cCHHH-HHHHHH
Confidence 44567777777 579999998665544 888888776643 4455666553 22333 444666
Q ss_pred HHHHhCCCceeEEEeCC--CCChHHHHHHHHHHHHcCCcCEEeecCCCHHHHH
Q 017861 154 SLFRLGLSSVELYQLAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR 204 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~~--~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~ 204 (365)
-|++-|.+.+ .+++-. ..+.++.-+.-++|++.|--+-+|=.. +++++-
T Consensus 75 ~l~~~gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt-~~~~iv 125 (134)
T TIGR01501 75 KCDEAGLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT-PPEVVI 125 (134)
T ss_pred HHHHCCCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC-CHHHHH
Confidence 6777777543 244422 123344444456778888555555444 444443
No 335
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=5.4e+02 Score=21.80 Aligned_cols=55 Identities=29% Similarity=0.175 Sum_probs=38.1
Q ss_pred HHHHhCCCceeEEEeCCC-CC-----hHHHHHHHHHHHHcCCcCEEeecCCCHHHHHHHHHH
Q 017861 154 SLFRLGLSSVELYQLAGI-WG-----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 209 (365)
Q Consensus 154 SL~~Lg~d~iDl~~l~~~-~~-----~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 209 (365)
+|..+.-..+=||+.|.. ++ ..+.-+.+.++.+.|- .-||||..++...++..+.
T Consensus 24 ~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a-~V~GIS~Ds~~~~~~F~~k 84 (157)
T COG1225 24 SLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGA-VVLGISPDSPKSHKKFAEK 84 (157)
T ss_pred ehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCC-EEEEEeCCCHHHHHHHHHH
Confidence 566665566666666643 22 4456677778888864 5699999999998888544
No 336
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.23 E-value=8.4e+02 Score=24.04 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC-CCceeEEEe--CCCC-----ChHHHHHHH
Q 017861 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQL--AGIW-----GNEGFIDGL 181 (365)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg-~d~iDl~~l--~~~~-----~~~~~~~~l 181 (365)
|+-|-+++++...+.+.+=++|.|-+... .-.+.+..-+++.-++.. ...+.++.+ |+.. ..+..+++|
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~V~ttc~~e---iIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~al 142 (417)
T cd01966 66 GENLEEALDTLAERAKPKVIGLLSTGLTE---TRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAI 142 (417)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccc---ccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 77777777765433324567787777532 223333333333323311 013556666 3321 122333333
Q ss_pred HH-H--------HHcCCcCEEeecCCCHHHHHHHHHHHHhcCCce
Q 017861 182 GD-A--------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 217 (365)
Q Consensus 182 ~~-l--------~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 217 (365)
.+ + ++.++|--||-++.++..++++.+..+..|+++
T Consensus 143 ~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v 187 (417)
T cd01966 143 IEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEP 187 (417)
T ss_pred HHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 22 2 234567788755555667777777676666654
No 337
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=20.19 E-value=2.8e+02 Score=25.96 Aligned_cols=53 Identities=15% Similarity=0.390 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHhcCCceeeeeeecccccC--------C----cccccHHHHHHHhCCeEEEe
Q 017861 198 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR--------K----PEENGVKAACDELGITLIAY 250 (365)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~--------~----~~~~~~~~~~~~~gi~v~a~ 250 (365)
.+.+++.++++.+++.++|++++++...-... + +...++++..+++|+.++.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~ 85 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLW 85 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEE
Confidence 46677888888888888888887665322211 1 11136999999999998775
No 338
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.18 E-value=5.9e+02 Score=23.87 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=53.6
Q ss_pred hCCCceeEEEeCCC---CChHHHHHHHHHHHHcCCcCEEeecCC-CHHHHHHHHHHHHhcCCceeeeeeecccccCCccc
Q 017861 158 LGLSSVELYQLAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE 233 (365)
Q Consensus 158 Lg~d~iDl~~l~~~---~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~ 233 (365)
.|+..+.+|+=|.. ..+.|++.-+ .+++.||-+|=+-.| +.+.+..+++.+.+++++.-+ ++++....
T Consensus 116 ~g~Tr~~vy~qPp~~~~p~IKE~vR~~--I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYi------LLD~~~~~ 187 (284)
T PF07894_consen 116 KGVTRATVYFQPPKDGQPHIKEVVRRM--IQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYI------LLDEQNLP 187 (284)
T ss_pred cCCceEEEEeCCCCCCCCCHHHHHHHH--HHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEE------EechhcCh
Confidence 46677777777422 2244444432 356789999999988 678888999988777775433 34444333
Q ss_pred ccHHHHHHHhCCeE
Q 017861 234 NGVKAACDELGITL 247 (365)
Q Consensus 234 ~~~~~~~~~~gi~v 247 (365)
-.++.|++.+|..
T Consensus 188 -~Fl~Mc~~~~v~~ 200 (284)
T PF07894_consen 188 -HFLEMCEKLGVNL 200 (284)
T ss_pred -HHHHHHHHCCCCh
Confidence 3888999887754
No 339
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.13 E-value=7.2e+02 Score=23.26 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeEEEeCC------CCChHHHHHHHHHHHHc--CCc-CEEeecCCCHHHHHHHHHHHHh
Q 017861 142 LGRQSVLAALKDSLFRLGLSSVELYQLAG------IWGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLKK 212 (365)
Q Consensus 142 ~~~~~i~~~l~~SL~~Lg~d~iDl~~l~~------~~~~~~~~~~l~~l~~~--G~i-r~iGvS~~~~~~l~~~~~~~~~ 212 (365)
.+.+.+++-++..++ -| +|-+++-. ....+|-.+.++..++. |+| --.|++..+..+..++.+.+++
T Consensus 22 vD~~a~~~lv~~li~-~G---v~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 22 VDEEALRRLVEFLIA-AG---VDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred cCHHHHHHHHHHHHH-cC---CCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHh
Confidence 455555555444333 23 56555511 12367777777777654 566 4678988887777777777777
Q ss_pred cCCc-eeeeeeecccccCCcccccHHHHHHHhCCeEEEec-ccccc
Q 017861 213 RGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYC-PIAQG 256 (365)
Q Consensus 213 ~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v~a~~-~l~~G 256 (365)
.|.. +.++--.|+-..+.....-+...+++-++.++.|. |...|
T Consensus 98 ~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg 143 (299)
T COG0329 98 LGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTG 143 (299)
T ss_pred cCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 7754 44444555554433221224444566689999987 54444
No 340
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=20.11 E-value=3.6e+02 Score=26.75 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCce--eeeeeecccccCCc---ccccHHHHHHHhCCeEEEeccccccccc
Q 017861 200 EKRLRNAYEKLKKRGIPL--ASNQVNYSLIYRKP---EENGVKAACDELGITLIAYCPIAQGALT 259 (365)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~--~~~q~~~n~~~~~~---~~~~~~~~~~~~gi~v~a~~~l~~G~L~ 259 (365)
.+.++.+++.+...+.+. .++-.+-||+-..- +-..++.++.++||.+|.=-.+++-.+.
T Consensus 210 v~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~ 274 (471)
T KOG0256|consen 210 VEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFD 274 (471)
T ss_pred HHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccC
Confidence 566777777777766543 34445666654322 1135889999999999987777765553
No 341
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.10 E-value=6.1e+02 Score=24.48 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCceeEEEeCCCCChHHHHHHHHHHHHcCCcCEEeecCC-----CHHHHHHHHHHHHhcCCce
Q 017861 148 LAALKDSLFRLGLSSVELYQLAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPL 217 (365)
Q Consensus 148 ~~~l~~SL~~Lg~d~iDl~~l~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-----~~~~l~~~~~~~~~~~~~~ 217 (365)
...+...+++.|.+ +.+++- .+.+ .+++..+ .+++.|=+++- ....++++.+.+++.++.+
T Consensus 99 ~~~~~~~~~~~G~~---v~~vd~-~d~~----~le~~i~-~~tklv~le~psnptg~v~dl~~I~~la~~~g~~v 164 (378)
T TIGR01329 99 DRLLTQVVPRSGVV---VVHVDT-TDLD----KVKAALG-PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALV 164 (378)
T ss_pred HHHHHHHHHHcCcE---EEEeCC-CCHH----HHHHhcC-cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEE
Confidence 34455566677754 333321 1232 2333332 34555554332 1235666666677666543
No 342
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=20.07 E-value=4e+02 Score=25.56 Aligned_cols=37 Identities=19% Similarity=0.422 Sum_probs=22.4
Q ss_pred eeeeeecccccCCccc---ccHHHHHHHhCCeEEEecccc
Q 017861 218 ASNQVNYSLIYRKPEE---NGVKAACDELGITLIAYCPIA 254 (365)
Q Consensus 218 ~~~q~~~n~~~~~~~~---~~~~~~~~~~gi~v~a~~~l~ 254 (365)
+.....||+.+..... .++.+.|+++|+.+-.|-...
T Consensus 122 ~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 122 PSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp --TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch
Confidence 3334456665533222 369999999999998876655
No 343
>PRK14865 rnpA ribonuclease P; Provisional
Probab=20.06 E-value=3.3e+02 Score=21.57 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=20.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCceeEEEe
Q 017861 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQL 168 (365)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~SL~~Lg--~d~iDl~~l 168 (365)
|=-+.|+=|+|. ...+..+++-+.++.+... ....|++++
T Consensus 46 RvG~sVsKKvg~---AV~RNRiKR~lRE~~R~~~~~l~~~divii 87 (116)
T PRK14865 46 KIGITVSRKVGN---AVVRNRIKRLVREFYRLNKSLFIVADYNII 87 (116)
T ss_pred EEEEEEecccCc---chhHHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 344555555553 3445556666665554321 123466666
Done!