BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017862
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 298 QSATLPKECTTVQKCYIELAKQVKAKLVDEYFIKLADAMVTWIE------AWDELNPPPG 351
SAT P + ++L +V + +DE+F+K DA + E D+ NP
Sbjct: 27 NSATGPMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNP--- 83
Query: 352 GKSTELPNGAA 362
T LP G+A
Sbjct: 84 ---TSLPGGSA 91
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 298 QSATLPKECTTVQKCYIELAKQVKAKLVDEYFIKLADAMVTWIE------AWDELNPPPG 351
SAT P + ++L +V + +DE+F+K DA + E D+ NP
Sbjct: 7 NSATGPMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNP--- 63
Query: 352 GKSTELPNGAA 362
T LP G+A
Sbjct: 64 ---TSLPGGSA 71
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 298 QSATLPKECTTVQKCYIELAKQVKAKLVDEYFIKLADAMVTWIE------AWDELNPPPG 351
SAT P + ++L +V + +DE+F+K DA + E D+ NP
Sbjct: 7 NSATGPMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNP--- 63
Query: 352 GKSTELPNGAA 362
T LP G+A
Sbjct: 64 ---TSLPGGSA 71
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 298 QSATLPKECTTVQKCYIELAKQVKAKLVDEYFIKLADAMVTWIE------AWDELNPPPG 351
SAT P + ++L +V + +DE+F+K DA + E D+ NP
Sbjct: 7 NSATGPMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNP--- 63
Query: 352 GKSTELPNGAA 362
T LP G+A
Sbjct: 64 ---TSLPGGSA 71
>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1333
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 175 LNIPDYDAPTQLVKPLERNTRFVDA--IMTIPKGTLFPMCGMN 215
++I D + +++ P E T+ VDA IMT PKG LF + M+
Sbjct: 1166 VDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMD 1208
>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus By
Cryo-Electron Microscopy
pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus By
Cryo-Electron Microscopy
pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1333
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 175 LNIPDYDAPTQLVKPLERNTRFVDA--IMTIPKGTLFPMCGMN 215
++I D + +++ P E T+ VDA IMT PKG LF + M+
Sbjct: 1166 VDILDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMD 1208
>pdb|3O48|A Chain A, Crystal Structure Of Fission Protein Fis1 From
Saccharomyces Cerevisiae
Length = 134
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 31/143 (21%)
Query: 13 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDI 72
P LKD + + P + L+ L Q +V +G P+ TI+ + + L D+
Sbjct: 9 PTLKDAYEPLYP--QQLEILRQQ----------VVSEGGPTATIQSRFNYAWGLIKSTDV 56
Query: 73 N------RIL--------GPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSG 118
N +IL + C+ + C G K+YV D + +
Sbjct: 57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV-----DTLFEHERNN 111
Query: 119 KEINALEQHIRNLLSPSTPFFFN 141
K++ AL+ + + + +F
Sbjct: 112 KQVGALKSMVEDKIQKEENLYFQ 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,440,394
Number of Sequences: 62578
Number of extensions: 562067
Number of successful extensions: 1084
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1080
Number of HSP's gapped (non-prelim): 11
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)