BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017863
(365 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 16/68 (23%)
Query: 235 ENPDGERVCRICHLGS--EQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLK 292
E P CRICH G+ E LL CGC LG H C E W
Sbjct: 56 ETPSDGPFCRICHEGANGESLLSP--------------CGCSGTLGAVHKSCLERWLSSS 101
Query: 293 GNRLCEIC 300
CE+C
Sbjct: 102 NTSYCELC 109
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 16/68 (23%)
Query: 235 ENPDGERVCRICHLGS--EQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLK 292
+ P CRICH G+ E LL CGC LG H C E W
Sbjct: 56 DTPSDCPFCRICHEGANGENLLSP--------------CGCTGTLGAVHKSCLEKWLSSS 101
Query: 293 GNRLCEIC 300
CE+C
Sbjct: 102 NTSYCELC 109
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 20/89 (22%)
Query: 243 CRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLK--------GN 294
CRIC + A S + L++ CGC L H +C + W K+K
Sbjct: 659 CRICQI---------AGGSPSNPLLE-PCGCVGSLQFVHQECLKKWLKVKITSGADLGAV 708
Query: 295 RLCEICGQSAKNITGVGDYRFMEEWNERR 323
+ CE+C Q + +GD+ +E + + +
Sbjct: 709 KTCEMCKQGL--LVDLGDFNMIEFYQKHQ 735
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 235 ENPDGER-VCRICHLGSEQ--LLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL 291
++P +R +CRICH GS Q LL C C LG H C E W
Sbjct: 62 QSPFNDRPMCRICHEGSSQEDLLS--------------PCECTGTLGTIHRSCLEHWLSS 107
Query: 292 KGNRLCEIC 300
CE+C
Sbjct: 108 SNTSYCELC 116
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 235 ENPDGER-VCRICHLGSEQ--LLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL 291
++P +R +CRICH GS Q LL C C LG H C E W
Sbjct: 62 QSPFNDRPMCRICHEGSSQEDLLS--------------PCECTGTLGTIHRSCLEHWLSS 107
Query: 292 KGNRLCEIC 300
CE+C
Sbjct: 108 SNTSYCELC 116
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 16/68 (23%)
Query: 235 ENPDGERVCRICHLGS--EQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLK 292
+ P CRICH G+ E LL CGC LG H C E W
Sbjct: 56 DTPSDGPFCRICHEGANGECLLSP--------------CGCTGTLGAVHKSCLEKWLSSS 101
Query: 293 GNRLCEIC 300
CE+C
Sbjct: 102 NTSYCELC 109
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 235 ENPDGER-VCRICHLGSEQ--LLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL 291
++P +R +CRICH GS Q LL C C LG H C E W
Sbjct: 62 QSPFNDRPMCRICHEGSSQEDLLS--------------PCECTGTLGTIHRSCLEHWLSS 107
Query: 292 KGNRLCEIC 300
CE+C
Sbjct: 108 SNTSYCELC 116
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 235 ENPDGER-VCRICHLGSEQ--LLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL 291
++P +R +CRICH GS Q LL C C LG H C E W
Sbjct: 62 QSPFNDRPMCRICHEGSSQEDLLSP--------------CECTGTLGTIHRSCLEHWLSS 107
Query: 292 KGNRLCEIC 300
CE+C
Sbjct: 108 SNTSYCELC 116
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 18/68 (26%)
Query: 243 CRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNR------- 295
CRIC + A+++ NL+ C C L H DC + W + K N
Sbjct: 552 CRICQMA----------AASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAV 601
Query: 296 -LCEICGQ 302
CE+C +
Sbjct: 602 TTCELCKE 609
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 18/68 (26%)
Query: 243 CRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNR------- 295
CRIC + A+++ NL+ C C L H DC + W + K N
Sbjct: 552 CRICQMA----------AASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAV 601
Query: 296 -LCEICGQ 302
CE+C +
Sbjct: 602 TTCELCKE 609
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 20/71 (28%)
Query: 232 GFRENPDGERVCRICHLGSEQ--LLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWF 289
F ++P +CRICH GS Q LL C C LG H C E W
Sbjct: 63 SFNDHP----MCRICHEGSTQEDLLS--------------PCECTGTLGTIHRSCLEHWL 104
Query: 290 KLKGNRLCEIC 300
CE+C
Sbjct: 105 SSSNTSYCELC 115
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 236 NPDGERVCRICHL--GSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKG 293
P + +CRICH E L T C C L H C + W K
Sbjct: 69 TPSNQDICRICHCEGDDESPLIT-------------PCHCTGSLHFVHQACLQQWIKSSD 115
Query: 294 NRLCEICGQSAKNITGVGDYRFMEEWNERRFIAS 327
R CE+C T + R +W + + AS
Sbjct: 116 TRCCELCKYEFIMETKLKPLR---KWEKLQMTAS 146
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 16/60 (26%)
Query: 243 CRICHLGS--EQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEIC 300
CRICH G+ E LL CGC LG H C E W CE+C
Sbjct: 64 CRICHEGANGENLLSP--------------CGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 237 PDGERVCRICHL-GSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNR 295
P + +CRICH G E+ + + C C L H C W K R
Sbjct: 74 PSTQDICRICHCEGDEE------------SPLITPCRCTGTLRFVHQSCLHQWIKSSDTR 121
Query: 296 LCEICGQSAKNITGVGDYRFMEEW----NERRFIASS 328
CE+C T + R E+ +ERR I S
Sbjct: 122 CCELCKYDFIMETKLKPLRKWEKLQMTTSERRKIFCS 158
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 20/72 (27%)
Query: 231 KGFRENPDGERVCRICHLGSEQ--LLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAW 288
+ F + P +CRICH GS Q LL C C LG H C E W
Sbjct: 61 QSFNDRP----MCRICHEGSTQEDLLS--------------PCECTGTLGTIHRSCLEHW 102
Query: 289 FKLKGNRLCEIC 300
CE+C
Sbjct: 103 LSSSNTSYCELC 114
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 17/97 (17%)
Query: 237 PDGERVCRICHL-GSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNR 295
P + +CRICH G E+ T C C L H C W K R
Sbjct: 74 PSTQDICRICHCEGDEESPLITP------------CRCTGTLRFVHQSCLHQWIKSSDTR 121
Query: 296 LCEICGQSAKNITGVGDYRFMEEW----NERRFIASS 328
CE+C T + R E+ +ERR I S
Sbjct: 122 CCELCKYDFIMETKLKPLRKWEKLQMTTSERRKIFCS 158
>sp|Q91T40|LAP_LSDV E3 ubiquitin-protein ligase LAP OS=Lumpy skin disease virus
GN=LW010 PE=3 SV=1
Length = 162
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 271 CGCKDELGVAHSDCAEAWFKLKGNRLCEICG 301
C CK+E + H +C E W N C+IC
Sbjct: 25 CNCKNEFKIVHKNCLEEWINFSHNTKCKICN 55
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 19/99 (19%)
Query: 236 NPDGERVCRICHL--GSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKG 293
P + +CRICH E L T C C L H C + W K
Sbjct: 73 TPSSQDICRICHCEGDDESPLIT-------------PCHCTGSLHFVHQACLQQWIKSSD 119
Query: 294 NRLCEICGQSAKNITGVGDYRFMEEW----NERRFIASS 328
R CE+C T + R E+ +ERR I S
Sbjct: 120 TRCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCS 158
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 236 NPDGERVCRICHL-GSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGN 294
P + +CRICH G ++ T C C L H C + W K
Sbjct: 71 TPSNQDICRICHCEGDDESPLITP------------CRCTGSLHFVHQTCLQQWIKSSDT 118
Query: 295 RLCEICGQSAKNITGVGDYRFMEEW----NERRFIASS 328
R CE+C T + R E+ +ERR I S
Sbjct: 119 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCS 156
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 18/69 (26%)
Query: 242 VCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNR------ 295
+CRIC + A+++ NL+ C C L H +C + W + K N
Sbjct: 552 LCRICQMA----------AASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEA 601
Query: 296 --LCEICGQ 302
CE+C +
Sbjct: 602 VTTCELCKE 610
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 17/72 (23%)
Query: 231 KGFRENPDGERVCRICHLGS--EQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAW 288
K DG +CRICH G E+LL C C LG H C E W
Sbjct: 53 KALGTQSDGP-ICRICHEGGNGERLLSP--------------CDCTGTLGTVHKTCLEKW 97
Query: 289 FKLKGNRLCEIC 300
CE+C
Sbjct: 98 LSSSNTSYCELC 109
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 20/87 (22%)
Query: 243 CRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGN-------- 294
CRIC + + N + CGC L H +C + W K+K
Sbjct: 641 CRICQIA----------GGSPANPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTV 690
Query: 295 RLCEICGQSAKNITGVGDYRFMEEWNE 321
+ CE+C Q + + D+ E +++
Sbjct: 691 KTCEMCKQGL--LVDLDDFNMTEFYHK 715
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 17/72 (23%)
Query: 231 KGFRENPDGERVCRICHLGS--EQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAW 288
K DG +CRICH G E+LL C C LG H C E W
Sbjct: 53 KALGTQSDGP-ICRICHEGGNGERLLS--------------PCDCTGTLGTVHKTCLEKW 97
Query: 289 FKLKGNRLCEIC 300
CE+C
Sbjct: 98 LSSSNTSYCELC 109
>sp|P32225|LAP_SWPVK E3 ubiquitin-protein ligase LAP OS=Swinepox virus (strain Kasza)
GN=LAP PE=3 SV=1
Length = 155
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 270 GCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNITGV 310
C CK+E V H +C + W + R C++C + NI V
Sbjct: 18 YCNCKNEYKVVHDECMKKWIQYSRERSCKLCNKEY-NIISV 57
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 35.0 bits (79), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 236 NPDGERVCRICHL--GSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKG 293
P + +CRICH E L T C C L H C + W K
Sbjct: 46 TPSSQDICRICHCEGDDESPLIT-------------PCHCTGSLHFVHQACLQQWIKSSD 92
Query: 294 NRLCEICGQSAKNITGVGDYRFMEEWNERRFIAS 327
R CE+C T + R +W + + AS
Sbjct: 93 TRCCELCKFEFIMETKLKPLR---KWEKLQMTAS 123
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 236 NPDGERVCRICHL--GSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKG 293
P + +CRICH E L T C C L H C + W K
Sbjct: 46 TPSSQDICRICHCEGDDESPLIT-------------PCHCTGSLHFVHQACLQQWIKSSD 92
Query: 294 NRLCEICGQSAKNITGVGDYRFMEEWNERRFIAS 327
R CE+C T + R +W + + AS
Sbjct: 93 TRCCELCKFEFIMETKLKPLR---KWEKLQMTAS 123
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 35.0 bits (79), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 18/68 (26%)
Query: 243 CRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNR------- 295
CRIC + A+++ NL+ C C L H +C + W + K N
Sbjct: 554 CRICQMA----------AASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAV 603
Query: 296 -LCEICGQ 302
CE+C +
Sbjct: 604 TTCELCKE 611
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 19/64 (29%)
Query: 242 VCRICHLG-----SEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRL 296
+CRICH G SE LL C C LG H C E W
Sbjct: 63 ICRICHEGQDVCNSEGLLS--------------PCDCTGTLGTVHKSCLEKWLSSSNTSY 108
Query: 297 CEIC 300
CE+C
Sbjct: 109 CELC 112
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 271 CGCKDELGVAHSDCAEAWFKLKGNRLCEICG 301
CGC EL H C W + N C+ICG
Sbjct: 24 CGCTGELENVHRSCLSTWLTISRNTACQICG 54
>sp|O41933|MIR1_MHV68 E3 ubiquitin-protein ligase MIR1 OS=Murid herpesvirus 4 GN=K3 PE=1
SV=1
Length = 201
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 271 CGCKDELGVAHSDCAEAWFKLKGNRLCEICG 301
CGCK V+H DC W + + C +CG
Sbjct: 22 CGCKGSCAVSHQDCLRGWLETSRRQTCALCG 52
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 271 CGCKDELGVAHSDCAEAWFKLKGNRLCEIC 300
C C EL V H C W + N C++C
Sbjct: 30 CACTGELDVVHPQCLSTWLTVSRNTACQMC 59
>sp|B3ER35|TPIS_AMOA5 Triosephosphate isomerase OS=Amoebophilus asiaticus (strain 5a2)
GN=tpiA PE=3 SV=1
Length = 253
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 50 GGGIDDFGSKTDDPGSSRALVEAQEVVIN----HDTCTSRVIGENSSNPVDGVSLETVAV 105
G I F S G S+ L ++ + HD GE S+ + + + V V
Sbjct: 37 GAQIILFPSFIHLEGISKLLTPEVKLHLGAQNCHDQIAGAFTGEVSAAMLASIDVRYVLV 96
Query: 106 RNSEQNTGFTEENGRLGLKIDKMVS 130
+SE+ F E+N + KID ++S
Sbjct: 97 GHSERRQNFAEDNDLIAKKIDAILS 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,335,360
Number of Sequences: 539616
Number of extensions: 5914784
Number of successful extensions: 10903
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 10840
Number of HSP's gapped (non-prelim): 76
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)