Query 017863
Match_columns 365
No_of_seqs 212 out of 587
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 06:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 5.6E-18 1.9E-22 127.4 4.2 55 238-305 4-58 (60)
2 2d8s_A Cellular modulator of i 99.6 1.7E-15 5.7E-20 119.6 6.0 59 237-306 12-70 (80)
3 2ep4_A Ring finger protein 24; 98.2 1.5E-06 5.1E-11 64.9 5.2 55 237-308 12-66 (74)
4 2ect_A Ring finger protein 126 98.1 1.4E-06 4.8E-11 65.6 2.9 53 236-305 11-63 (78)
5 2kiz_A E3 ubiquitin-protein li 98.0 6.5E-06 2.2E-10 60.6 5.2 53 237-306 11-63 (69)
6 1x4j_A Ring finger protein 38; 97.9 4E-06 1.4E-10 62.9 2.0 51 238-305 21-71 (75)
7 2ecm_A Ring finger and CHY zin 97.9 7.2E-06 2.5E-10 57.5 3.1 50 239-304 4-53 (55)
8 2yur_A Retinoblastoma-binding 97.8 1.3E-05 4.4E-10 60.4 3.6 49 238-304 13-62 (74)
9 1iym_A EL5; ring-H2 finger, ub 97.8 5.8E-06 2E-10 58.1 1.5 49 239-304 4-53 (55)
10 2l0b_A E3 ubiquitin-protein li 97.8 7.5E-06 2.6E-10 64.2 2.0 51 238-305 38-88 (91)
11 2ea6_A Ring finger protein 4; 97.8 1.7E-05 5.7E-10 57.6 3.7 57 236-305 11-67 (69)
12 1v87_A Deltex protein 2; ring- 97.7 3.2E-05 1.1E-09 62.0 4.3 64 240-308 25-96 (114)
13 2csy_A Zinc finger protein 183 97.7 5.4E-05 1.9E-09 57.5 5.4 49 237-305 12-60 (81)
14 2ct0_A Non-SMC element 1 homol 97.7 3.2E-05 1.1E-09 60.5 4.1 58 232-306 7-64 (74)
15 2ct2_A Tripartite motif protei 97.7 6.1E-05 2.1E-09 57.2 5.5 56 236-305 11-67 (88)
16 2ecy_A TNF receptor-associated 97.7 3.1E-05 1.1E-09 56.7 3.7 53 234-305 9-61 (66)
17 2ecl_A Ring-box protein 2; RNF 97.6 4.5E-05 1.5E-09 58.8 4.3 60 239-305 14-75 (81)
18 2djb_A Polycomb group ring fin 97.6 5.3E-05 1.8E-09 56.5 4.4 49 237-305 12-61 (72)
19 2ecj_A Tripartite motif-contai 97.6 5.4E-05 1.9E-09 53.4 3.9 48 235-300 10-58 (58)
20 2d8t_A Dactylidin, ring finger 97.6 2.9E-05 1E-09 57.7 2.6 48 238-305 13-60 (71)
21 2ecw_A Tripartite motif-contai 97.5 0.00011 3.9E-09 54.9 5.2 51 237-305 16-70 (85)
22 3ztg_A E3 ubiquitin-protein li 97.5 0.0001 3.6E-09 56.9 4.9 50 238-305 11-61 (92)
23 2ecv_A Tripartite motif-contai 97.5 0.00011 3.8E-09 54.9 4.8 52 236-305 15-70 (85)
24 1chc_A Equine herpes virus-1 r 97.4 7.2E-05 2.5E-09 54.6 2.9 50 239-307 4-53 (68)
25 1t1h_A Gspef-atpub14, armadill 97.4 0.00016 5.4E-09 54.3 4.6 66 238-322 6-74 (78)
26 2ysl_A Tripartite motif-contai 97.4 8.7E-05 3E-09 54.7 2.9 51 237-305 17-68 (73)
27 2ecn_A Ring finger protein 141 97.4 4.7E-05 1.6E-09 56.0 1.4 48 237-305 12-59 (70)
28 3ng2_A RNF4, snurf, ring finge 97.3 9.4E-05 3.2E-09 54.1 2.1 56 237-305 7-62 (71)
29 2ysj_A Tripartite motif-contai 97.2 0.00028 9.4E-09 51.0 4.1 47 236-300 16-63 (63)
30 2egp_A Tripartite motif-contai 97.2 6.5E-05 2.2E-09 56.1 0.6 52 236-305 8-64 (79)
31 3dpl_R Ring-box protein 1; ubi 97.2 0.0002 6.8E-09 58.9 3.3 59 240-305 37-100 (106)
32 2xeu_A Ring finger protein 4; 97.1 0.00017 5.9E-09 51.4 1.9 54 239-305 2-55 (64)
33 3fl2_A E3 ubiquitin-protein li 96.9 0.00063 2.1E-08 55.6 4.0 49 239-306 51-99 (124)
34 1g25_A CDK-activating kinase a 96.8 0.00054 1.9E-08 49.8 2.2 52 239-305 2-54 (65)
35 3lrq_A E3 ubiquitin-protein li 96.8 0.0007 2.4E-08 53.8 2.9 48 239-305 21-69 (100)
36 2ckl_B Ubiquitin ligase protei 96.7 0.00083 2.8E-08 57.4 3.3 48 239-305 53-101 (165)
37 4ayc_A E3 ubiquitin-protein li 96.7 0.0006 2E-08 57.0 2.1 47 240-306 53-99 (138)
38 3hct_A TNF receptor-associated 96.7 0.0011 3.9E-08 53.8 3.8 55 233-306 11-65 (118)
39 1z6u_A NP95-like ring finger p 96.5 0.0018 6.1E-08 55.6 4.0 49 239-306 77-125 (150)
40 1jm7_A BRCA1, breast cancer ty 96.5 0.0011 3.9E-08 52.4 2.5 48 240-305 21-69 (112)
41 2y43_A E3 ubiquitin-protein li 96.5 0.0012 4.2E-08 51.7 2.5 48 239-306 21-69 (99)
42 1e4u_A Transcriptional repress 96.4 0.0022 7.6E-08 49.8 3.8 54 238-306 9-62 (78)
43 4a0k_B E3 ubiquitin-protein li 96.4 0.00059 2E-08 57.4 0.3 59 240-305 48-111 (117)
44 2ckl_A Polycomb group ring fin 96.2 0.0013 4.4E-08 52.5 1.4 48 239-306 14-62 (108)
45 2y1n_A E3 ubiquitin-protein li 96.0 0.0037 1.3E-07 62.3 3.9 50 240-308 332-381 (389)
46 4ap4_A E3 ubiquitin ligase RNF 96.0 0.0018 6.1E-08 51.9 1.1 54 239-305 6-59 (133)
47 1rmd_A RAG1; V(D)J recombinati 95.9 0.0063 2.2E-07 48.9 4.2 49 239-306 22-70 (116)
48 3l11_A E3 ubiquitin-protein li 95.9 0.00076 2.6E-08 54.2 -1.3 48 239-305 14-61 (115)
49 2kr4_A Ubiquitin conjugation f 95.7 0.019 6.5E-07 44.6 5.9 65 238-322 12-79 (85)
50 3nw0_A Non-structural maintena 95.4 0.0074 2.5E-07 55.9 2.9 52 238-307 178-230 (238)
51 4ap4_A E3 ubiquitin ligase RNF 95.3 0.0054 1.8E-07 49.0 1.6 55 238-305 70-124 (133)
52 1wgm_A Ubiquitin conjugation f 95.2 0.015 5.1E-07 46.8 3.7 65 239-322 21-88 (98)
53 3k1l_B Fancl; UBC, ring, RWD, 95.0 0.0097 3.3E-07 59.2 2.7 55 237-304 305-371 (381)
54 2c2l_A CHIP, carboxy terminus 94.9 0.014 4.7E-07 52.2 3.0 63 239-320 207-272 (281)
55 3hcs_A TNF receptor-associated 94.8 0.015 5.2E-07 49.6 3.0 55 233-306 11-65 (170)
56 1jm7_B BARD1, BRCA1-associated 94.5 0.0065 2.2E-07 49.2 0.0 45 239-305 21-66 (117)
57 2kre_A Ubiquitin conjugation f 94.4 0.042 1.5E-06 44.2 4.6 63 239-321 28-93 (100)
58 2yu4_A E3 SUMO-protein ligase 94.2 0.043 1.5E-06 43.2 4.1 66 238-321 5-81 (94)
59 4ic3_A E3 ubiquitin-protein li 93.9 0.014 4.7E-07 44.0 0.8 45 239-306 23-67 (74)
60 3knv_A TNF receptor-associated 93.9 0.011 3.9E-07 50.1 0.3 50 236-304 27-76 (141)
61 2vje_B MDM4 protein; proto-onc 93.7 0.02 6.9E-07 42.1 1.3 52 239-307 6-57 (63)
62 2f42_A STIP1 homology and U-bo 93.4 0.053 1.8E-06 48.6 3.8 64 239-321 105-171 (179)
63 2vje_A E3 ubiquitin-protein li 93.1 0.033 1.1E-06 41.1 1.6 52 239-307 7-58 (64)
64 1bor_A Transcription factor PM 93.0 0.021 7.3E-07 40.8 0.5 45 238-305 4-48 (56)
65 2ea5_A Cell growth regulator w 92.8 0.11 3.6E-06 39.0 4.0 49 236-307 11-59 (68)
66 2ecg_A Baculoviral IAP repeat- 91.1 0.12 4E-06 38.8 2.6 44 240-306 25-68 (75)
67 1wim_A KIAA0161 protein; ring 89.0 0.26 8.9E-06 38.2 3.0 50 239-304 4-62 (94)
68 3t6p_A Baculoviral IAP repeat- 88.1 0.081 2.8E-06 51.5 -0.5 45 239-306 294-338 (345)
69 2yho_A E3 ubiquitin-protein li 81.4 0.4 1.4E-05 36.7 0.8 45 240-307 18-62 (79)
70 3htk_C E3 SUMO-protein ligase 81.3 0.87 3E-05 43.5 3.2 51 238-305 179-231 (267)
71 2bay_A PRE-mRNA splicing facto 79.8 0.95 3.3E-05 33.3 2.3 45 241-305 4-49 (61)
72 2lri_C Autoimmune regulator; Z 79.3 0.76 2.6E-05 34.9 1.7 51 236-304 8-60 (66)
73 1weo_A Cellulose synthase, cat 65.7 6.9 0.00024 32.2 4.3 57 239-308 15-72 (93)
74 2l43_A N-teminal domain from h 57.6 2.5 8.6E-05 33.5 0.4 54 238-304 23-76 (88)
75 2ku3_A Bromodomain-containing 55.8 2.1 7.3E-05 32.8 -0.3 53 238-303 14-66 (71)
76 1wen_A Inhibitor of growth fam 53.1 3.1 0.00011 31.8 0.2 49 236-303 12-65 (71)
77 1weu_A Inhibitor of growth fam 51.0 3.7 0.00013 33.2 0.3 52 236-304 32-86 (91)
78 2e6r_A Jumonji/ARID domain-con 48.6 1.5 5.3E-05 34.9 -2.2 53 237-304 13-67 (92)
79 1wev_A Riken cDNA 1110020M19; 48.5 0.8 2.7E-05 36.3 -3.9 54 239-305 15-74 (88)
80 2l5u_A Chromodomain-helicase-D 47.4 3.9 0.00013 30.1 -0.0 48 238-303 9-58 (61)
81 1mm2_A MI2-beta; PHD, zinc fin 44.0 2.4 8.1E-05 31.3 -1.7 48 238-303 7-56 (61)
82 1f62_A Transcription factor WS 43.1 4.4 0.00015 28.3 -0.3 46 242-302 2-49 (51)
83 3ql9_A Transcriptional regulat 42.9 19 0.00065 30.8 3.5 49 237-303 54-111 (129)
84 3u5n_A E3 ubiquitin-protein li 42.7 2.3 7.7E-05 37.9 -2.3 48 239-304 6-55 (207)
85 3o36_A Transcription intermedi 41.9 2.8 9.4E-05 36.5 -1.9 48 239-304 3-52 (184)
86 2yt5_A Metal-response element- 41.1 2.2 7.6E-05 31.3 -2.2 54 237-303 3-61 (66)
87 3v43_A Histone acetyltransfera 39.2 14 0.00049 29.9 2.1 41 239-288 4-44 (112)
88 2lbm_A Transcriptional regulat 35.0 22 0.00074 30.8 2.7 47 239-303 62-117 (142)
89 2kwj_A Zinc finger protein DPF 34.6 8.7 0.0003 31.3 0.1 55 241-303 2-67 (114)
90 1xwh_A Autoimmune regulator; P 33.9 2.9 0.0001 31.1 -2.6 48 238-303 6-55 (66)
91 2k16_A Transcription initiatio 33.8 5.6 0.00019 29.9 -1.1 51 239-304 17-69 (75)
92 2ysm_A Myeloid/lymphoid or mix 33.1 6 0.00021 31.7 -1.1 38 238-290 5-42 (111)
93 4gne_A Histone-lysine N-methyl 32.1 9.2 0.00031 31.6 -0.1 44 237-298 12-57 (107)
94 2vpb_A Hpygo1, pygopus homolog 31.5 17 0.00057 27.3 1.2 34 237-285 5-40 (65)
95 2yql_A PHD finger protein 21A; 28.7 3.1 0.00011 29.9 -3.1 47 238-302 7-55 (56)
96 2jny_A Uncharacterized BCR; st 26.7 19 0.00065 27.6 0.8 36 265-310 9-44 (67)
97 3i2d_A E3 SUMO-protein ligase 26.2 23 0.00078 35.2 1.5 51 266-320 258-313 (371)
98 2vnf_A ING 4, P29ING4, inhibit 24.6 5.1 0.00017 29.5 -2.7 49 237-302 7-58 (60)
99 4fo9_A E3 SUMO-protein ligase 24.4 25 0.00086 34.8 1.4 51 266-320 224-279 (360)
100 2ri7_A Nucleosome-remodeling f 23.8 12 0.00043 31.8 -0.8 52 238-304 6-60 (174)
101 1wep_A PHF8; structural genomi 23.4 55 0.0019 24.8 2.9 52 238-304 10-64 (79)
102 2ki9_A Cannabinoid receptor 2; 22.3 37 0.0012 21.4 1.4 13 347-359 8-20 (33)
103 1znf_A 31ST zinc finger from X 22.1 29 0.00099 18.8 0.8 11 296-306 3-13 (27)
104 1ard_A Yeast transcription fac 21.6 29 0.001 19.0 0.8 12 295-306 3-14 (29)
105 2jr6_A UPF0434 protein NMA0874 20.8 30 0.001 26.5 0.9 36 265-310 7-42 (68)
106 2kvh_A Zinc finger and BTB dom 20.2 29 0.001 19.1 0.6 12 295-306 4-15 (27)
107 2pk7_A Uncharacterized protein 20.1 27 0.00092 26.8 0.5 35 266-310 8-42 (69)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.70 E-value=5.6e-18 Score=127.42 Aligned_cols=55 Identities=31% Similarity=0.747 Sum_probs=48.2
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
+++..||||+.+.+ ++++ +||+|+|+++|||+.||++|++.+++.+||+|+++|.
T Consensus 4 ~~~~~CrIC~~~~~------------~~l~-~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG------------NERF-RACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS------------CCCC-CSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC------------Ccee-cCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 46789999998632 3354 6999999999999999999999999999999999995
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=119.58 Aligned_cols=59 Identities=31% Similarity=0.749 Sum_probs=50.2
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
+.++..||||++..+. .+++ .+||+|+|+++++|+.||++|++.+++.+||+|++.|..
T Consensus 12 ~~~~~~C~IC~~~~~~----------~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDD----------ESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCS----------SSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccC----------CCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4567899999987642 2344 579999999999999999999999998999999999964
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.5e-06 Score=64.86 Aligned_cols=55 Identities=16% Similarity=0.507 Sum_probs=40.9
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNIT 308 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV~ 308 (365)
.+.+..|.||++.... ...+..+||.. .+|..|+.+|++.+ ..|++|++.+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~----------~~~~~~~~C~H-----~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKP----------RDELGICPCKH-----AFHRKCLIKWLEVR--KVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCS----------SSCEEEETTTE-----EEEHHHHHHHHHHC--SBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCC----------CCcEEEcCCCC-----EecHHHHHHHHHcC--CcCCCcCccccccc
Confidence 3456799999988653 23344568754 79999999999875 47999999886543
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.09 E-value=1.4e-06 Score=65.61 Aligned_cols=53 Identities=21% Similarity=0.532 Sum_probs=40.1
Q ss_pred CCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 236 NPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 236 s~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
.......|.||++.... ...+..+||.. .+|..|+.+|++.+ ..|++|+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~----------~~~~~~~~C~H-----~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 63 (78)
T 2ect_A 11 HVGSGLECPVCKEDYAL----------GESVRQLPCNH-----LFHDSCIVPWLEQH--DSCPVCRKSLT 63 (78)
T ss_dssp TSSSSCCCTTTTSCCCT----------TSCEEECTTSC-----EEETTTTHHHHTTT--CSCTTTCCCCC
T ss_pred cCCCCCCCeeCCccccC----------CCCEEEeCCCC-----eecHHHHHHHHHcC--CcCcCcCCccC
Confidence 34457899999988653 23345668764 79999999999654 68999999875
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.02 E-value=6.5e-06 Score=60.56 Aligned_cols=53 Identities=26% Similarity=0.578 Sum_probs=40.1
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
.+.+..|.||+..... ...+..+||.. .+|..|+.+|++.+ ..|++|+..+..
T Consensus 11 ~~~~~~C~IC~~~~~~----------~~~~~~~~C~H-----~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEE----------GEDVRRLPCMH-----LFHQVCVDQWLITN--KKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCS----------SSCEEECTTSC-----EEEHHHHHHHHHHC--SBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccC----------CCcEEEeCCCC-----HHHHHHHHHHHHcC--CCCcCcCccccC
Confidence 3456789999987642 23456678764 78999999999875 469999998754
No 6
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=4e-06 Score=62.92 Aligned_cols=51 Identities=27% Similarity=0.649 Sum_probs=39.1
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
++...|.||++.... ...+..+||.. .+|..|+.+|++.+ ..|++|++.+.
T Consensus 21 ~~~~~C~IC~~~~~~----------~~~~~~l~C~H-----~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFES----------RQLLRVLPCNH-----EFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCB----------TCEEEEETTTE-----EEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred CCCCCCeECCcccCC----------CCeEEEECCCC-----HhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 356789999987643 23345678764 79999999999765 57999998874
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.87 E-value=7.2e-06 Score=57.53 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=38.6
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSA 304 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y 304 (365)
++..|.||++.... ....+..+||.. .+|..|+.+|++.+ ..|++|+..+
T Consensus 4 ~~~~C~IC~~~~~~---------~~~~~~~~~CgH-----~fc~~Ci~~~~~~~--~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHT---------SRVVAHVLPCGH-----LLHRTCYEEMLKEG--YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCT---------TTSCEEECTTSC-----EEETTHHHHHHHHT--CCCTTSCCSS
T ss_pred CCCcCcccChhhcC---------CCcCeEecCCCC-----cccHHHHHHHHHcC--CcCCCCCCcC
Confidence 46789999988642 123356678854 79999999999887 7799999876
No 8
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.80 E-value=1.3e-05 Score=60.40 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=39.6
Q ss_pred CCCCceeEcccCCcccccccccccCCCcccccc-ccCcCccccccHHHHHHHHHHhCCcccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLG-CGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSA 304 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lP-C~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y 304 (365)
.++..|.||+..... ++.+| |.. .+|+.|+.+|++.++...|++|+..+
T Consensus 13 ~~~~~C~IC~~~~~~-------------p~~~~~CgH-----~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIMTD-------------AVVIPCCGN-----SYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCCTT-------------CEECSSSCC-----EECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCCcCCChHHhC-------------CeEcCCCCC-----HHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 456789999887642 35568 765 78999999999988778999999975
No 9
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.79 E-value=5.8e-06 Score=58.14 Aligned_cols=49 Identities=22% Similarity=0.580 Sum_probs=37.0
Q ss_pred CCCceeEcccCCcccccccccccCCCcccccc-ccCcCccccccHHHHHHHHHHhCCcccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLG-CGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSA 304 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lP-C~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y 304 (365)
++..|.||++.... ...+..+| |.. .+|..|+.+|++. +..|++|++.+
T Consensus 4 ~~~~C~IC~~~~~~----------~~~~~~~~~C~H-----~f~~~Ci~~w~~~--~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELED----------GEEARFLPRCGH-----GFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCT----------TSCCEECSSSCC-----EECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCcCccCCccccC----------CCceEECCCCCC-----cccHHHHHHHHHc--CCcCcCCCCEe
Confidence 46789999988753 22345556 654 7999999999965 56799999876
No 10
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.77 E-value=7.5e-06 Score=64.24 Aligned_cols=51 Identities=22% Similarity=0.462 Sum_probs=38.9
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
+.+..|.||++.... ...+..+||.. .+|..|+.+|++. +..|++|++.+.
T Consensus 38 ~~~~~C~IC~~~~~~----------~~~~~~l~C~H-----~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVK----------GDVATELPCHH-----YFHKPCVSIWLQK--SGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCT----------TCEEEEETTTE-----EEEHHHHHHHHTT--TCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcC----------CCcEEecCCCC-----hHHHHHHHHHHHc--CCcCcCcCccCC
Confidence 356789999987643 23356678764 7999999999965 458999998863
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=1.7e-05 Score=57.61 Aligned_cols=57 Identities=25% Similarity=0.543 Sum_probs=40.1
Q ss_pred CCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 236 NPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 236 s~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
...+...|.||++...... .....++.+||.. .+|..|+.+|++. ...|++|+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~------~~~~~~~~~~CgH-----~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIV------QNGRLIVSTECGH-----VFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHT------TTTCCEEECSSSC-----EEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccc------cccCCeEeCCCCC-----hhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 3456788999998764210 0112235568865 7999999999987 467999998864
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.67 E-value=3.2e-05 Score=62.03 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=40.3
Q ss_pred CCceeEcccCCcccccccc-c-c--c-CCCccccccccCcCccccccHHHHHHHHHH---hCCcccccccccccccc
Q 017863 240 ERVCRICHLGSEQLLETTA-T-A--S-TTVNLIQLGCGCKDELGVAHSDCAEAWFKL---KGNRLCEICGQSAKNIT 308 (365)
Q Consensus 240 E~~CRICh~~~e~~~e~~~-~-~--~-~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~---Kgn~~CEICk~~y~nV~ 308 (365)
+..|-||++.......... . . . .......+||.. .+|..||.+|+.. +....|++|+..|....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H-----~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSH-----AFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCC-----EECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCC-----cccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 4589999988653110000 0 0 0 001111458875 8999999999976 45679999999986443
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=5.4e-05 Score=57.47 Aligned_cols=49 Identities=22% Similarity=0.391 Sum_probs=38.1
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
.+....|.||+.... . ++.+||.. .+|..|+.+|++. ...|++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~------------~-p~~~~CgH-----~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQ------------N-PVVTKCRH-----YFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCC------------S-EEECTTSC-----EEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhc------------C-eeEccCCC-----HhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 345679999998763 2 34568875 6799999999975 568999999975
No 14
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=3.2e-05 Score=60.53 Aligned_cols=58 Identities=24% Similarity=0.456 Sum_probs=42.3
Q ss_pred CCccCCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 232 GFRENPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 232 ~~~es~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
....-++....|-||+..... + +.-+ .|. ..+|..||.+||+.+++.+|++|+..+..
T Consensus 7 ~~~~y~~~i~~C~IC~~~i~~-----------g--~~C~-~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 7 GRETYPDAVKICNICHSLLIQ-----------G--QSCE-TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CCCCCSSSSCBCSSSCCBCSS-----------S--EECS-SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred chhhccCCCCcCcchhhHccc-----------C--CccC-CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 444445567899999987642 1 2212 453 47999999999998878999999988753
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=6.1e-05 Score=57.19 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=41.7
Q ss_pred CCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHh-CCccccccccccc
Q 017863 236 NPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLK-GNRLCEICGQSAK 305 (365)
Q Consensus 236 s~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~K-gn~~CEICk~~y~ 305 (365)
...+...|.||+..... ....+..+||.. .+|..|+.+|++.+ +...|++|+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~---------~~~~~~~~~CgH-----~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTE---------EQLRPKLLHCGH-----TICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCT---------TSSCEEECSSSC-----EEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccc---------cCCCeEECCCCC-----hhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 34457889999987643 112245668854 78999999999876 4579999999874
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=3.1e-05 Score=56.71 Aligned_cols=53 Identities=23% Similarity=0.403 Sum_probs=39.5
Q ss_pred ccCCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 234 RENPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 234 ~es~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
.+...++..|.||+.... . ++.+||.. .+|+.|+.+|++ ++...|++|+..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~------------~-p~~~~CgH-----~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLC------------S-PKQTECGH-----RFCESCMAALLS-SSSPKCTACQESIV 61 (66)
T ss_dssp CCSCCCCEECTTTCCEES------------S-CCCCSSSC-----CCCHHHHHHHHT-TSSCCCTTTCCCCC
T ss_pred hhcCCcCCCCCCCChHhc------------C-eeECCCCC-----HHHHHHHHHHHH-hCcCCCCCCCcCCC
Confidence 334456789999997653 2 23468775 689999999997 55678999998874
No 17
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=4.5e-05 Score=58.85 Aligned_cols=60 Identities=22% Similarity=0.447 Sum_probs=37.7
Q ss_pred CCCceeEcccCCcccccc-cccccCCCcccccc-ccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 239 GERVCRICHLGSEQLLET-TATASTTVNLIQLG-CGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~-~~~~~~s~~LI~lP-C~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
++..|-||+.......-- .++-.....++.+| |.. .+|..|+.+|++.+ .+|++|++.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H-----~FH~~Ci~~Wl~~~--~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNH-----SFHNCCMSLWVKQN--NRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSC-----EEEHHHHHHHTTTC--CBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCC-----ccChHHHHHHHHhC--CCCCCcCCCcc
Confidence 466799998877531000 00000122244555 654 79999999999765 58999999874
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=5.3e-05 Score=56.48 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=37.6
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccc-cccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQL-GCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~l-PC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
-++...|.||+..... ++.+ ||.. .+|..|+.+|++. ...|++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~-------------p~~~~~CgH-----~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 61 (72)
T 2djb_A 12 LTPYILCSICKGYLID-------------ATTITECLH-----TFCKSCIVRHFYY--SNRCPKCNIVVH 61 (72)
T ss_dssp CCGGGSCTTTSSCCSS-------------CEECSSSCC-----EECHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred cCCCCCCCCCChHHHC-------------cCEECCCCC-----HHHHHHHHHHHHc--CCcCCCcCcccC
Confidence 3456789999987642 2333 8865 6899999999976 467999999875
No 19
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=5.4e-05 Score=53.37 Aligned_cols=48 Identities=23% Similarity=0.569 Sum_probs=36.1
Q ss_pred cCCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHH-hCCcccccc
Q 017863 235 ENPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL-KGNRLCEIC 300 (365)
Q Consensus 235 es~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~-Kgn~~CEIC 300 (365)
+...+...|.||+..... ++.+||.. .+|+.|+.+|++. +....|++|
T Consensus 10 ~~~~~~~~C~IC~~~~~~-------------p~~~~CgH-----~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKE-------------PVIIECGH-----NFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSS-------------CCCCSSCC-----CCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCc-------------cEeCCCCC-----ccCHHHHHHHHHhcCCCCCCCCC
Confidence 344567899999987642 24468765 6899999999874 567889998
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=2.9e-05 Score=57.72 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=37.2
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
.+...|.||++.... ++.+||.. .+|..|+.+|++.+ ..|++|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~-------------~~~~~CgH-----~fC~~Ci~~~~~~~--~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVH-------------PVSLPCKH-----VFCYLCVKGASWLG--KRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSS-------------EEEETTTE-----EEEHHHHHHCTTCS--SBCSSSCCBCC
T ss_pred CCCCCCccCCcccCC-------------CEEccCCC-----HHHHHHHHHHHHCC--CcCcCcCchhC
Confidence 456789999977532 35568764 69999999999654 78999999874
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.52 E-value=0.00011 Score=54.88 Aligned_cols=51 Identities=18% Similarity=0.373 Sum_probs=39.7
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHh----CCccccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLK----GNRLCEICGQSAK 305 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~K----gn~~CEICk~~y~ 305 (365)
-.+...|.||+..... ++.+||.. .+|+.|+.+|++.. +...|++|+..+.
T Consensus 16 ~~~~~~C~IC~~~~~~-------------p~~~~CgH-----~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE-------------PVSADCNH-----SFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSS-------------CEECTTSC-----CBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCc-------------ceeCCCCC-----HHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 3456789999987642 24568765 68999999999884 3789999999874
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.50 E-value=0.0001 Score=56.89 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=40.2
Q ss_pred CCCCceeEcccCCcccccccccccCCCcccccc-ccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLG-CGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lP-C~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
.++..|.||+.... . ++.+| |.. .+++.|+.+|+..++...|++|+..+.
T Consensus 11 ~~~~~C~IC~~~~~------------~-p~~~~~CgH-----~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT------------D-AVVIPCCGN-----SYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS------------S-CEECTTTCC-----EECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc------------C-ceECCCCCC-----HHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45789999998753 2 45668 654 689999999999888889999999973
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.00011 Score=54.94 Aligned_cols=52 Identities=33% Similarity=0.516 Sum_probs=40.2
Q ss_pred CCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHH----hCCccccccccccc
Q 017863 236 NPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL----KGNRLCEICGQSAK 305 (365)
Q Consensus 236 s~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~----Kgn~~CEICk~~y~ 305 (365)
...+...|.||+..... ++.+||.. .+|+.|+.+|++. .+...|++|+..+.
T Consensus 15 ~~~~~~~C~IC~~~~~~-------------p~~~~CgH-----~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQ-------------PLSLDCGH-----SFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSS-------------CBCCSSSC-----CBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCC-------------ceeCCCCC-----HHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34457789999987642 34568765 6899999999987 35789999999875
No 24
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.42 E-value=7.2e-05 Score=54.62 Aligned_cols=50 Identities=18% Similarity=0.448 Sum_probs=38.2
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNI 307 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV 307 (365)
.+..|.||+.... .+...+||.. .+|..|+.+|++.+ ..|++|+..+..+
T Consensus 4 ~~~~C~IC~~~~~------------~~~~~~~C~H-----~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS------------NYSMALPCLH-----AFCYVCITRWIRQN--PTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC------------SCEEETTTTE-----EESTTHHHHHHHHS--CSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc------------CCcEecCCCC-----eeHHHHHHHHHhCc--CcCcCCChhhHhh
Confidence 4668999998753 2235568864 68999999999765 5799999988543
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.40 E-value=0.00016 Score=54.26 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=46.3
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc--ccc-cCchh
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN--ITG-VGDYR 314 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n--V~~-~~~~~ 314 (365)
.++-.|.||+....+ +..+||.- .+++.|+.+|++ ++...|++|+..+.. +.+ .....
T Consensus 6 ~~~~~C~IC~~~~~~-------------Pv~~~CgH-----~fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n~~l~~ 66 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-------------PVIVSTGQ-----TYERSSIQKWLD-AGHKTCPKSQETLLHAGLTPNYVLKS 66 (78)
T ss_dssp SSSSSCTTTSCCCSS-------------EEEETTTE-----EEEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEECTTTHH
T ss_pred cccCCCCCccccccC-------------CEEcCCCC-----eecHHHHHHHHH-HCcCCCCCCcCCCChhhCccCHHHHH
Confidence 357789999987642 34568764 689999999996 357889999998742 221 23556
Q ss_pred hHHHHhhh
Q 017863 315 FMEEWNER 322 (365)
Q Consensus 315 fleeW~~~ 322 (365)
.+++|..+
T Consensus 67 ~i~~~~~~ 74 (78)
T 1t1h_A 67 LIALWCES 74 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66777643
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=8.7e-05 Score=54.74 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=38.9
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHH-hCCccccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL-KGNRLCEICGQSAK 305 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~-Kgn~~CEICk~~y~ 305 (365)
.++...|.||+.... .++.+||.. .+|..|+.+|++. .+...|++|+..+.
T Consensus 17 ~~~~~~C~IC~~~~~-------------~~~~~~CgH-----~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQ-------------KPVTIDCGH-----NFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCS-------------SEEECTTCC-----EEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccC-------------CeEEcCCCC-----hhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 345789999998653 234558765 6899999999974 35679999999874
No 27
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=4.7e-05 Score=56.05 Aligned_cols=48 Identities=27% Similarity=0.579 Sum_probs=37.8
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
..+...|.||+.... . ..+||.. .+|..|+.+|++ ....|++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~------------~--~~~~CgH-----~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 12 LTDEEECCICMDGRA------------D--LILPCAH-----SFCQKCIDKWSD--RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCSSSCCSCC------------S--EEETTTE-----EECHHHHHHSSC--CCSSCHHHHHCTT
T ss_pred CCCCCCCeeCCcCcc------------C--cccCCCC-----cccHHHHHHHHH--CcCcCCCcCCccc
Confidence 345778999998753 2 4568864 689999999997 5678999998875
No 28
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.28 E-value=9.4e-05 Score=54.13 Aligned_cols=56 Identities=25% Similarity=0.559 Sum_probs=40.0
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
++++..|-||++......+ .....+.+||.. .+|..|+.+|++.+ ..|++|+..+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~------~~~~~~~~~CgH-----~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQ------NGRLIVSTECGH-----VFCSQCLRDSLKNA--NTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHT------TTCCEEECTTSC-----EEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhcccc------ccCCeEeCCCCC-----hHhHHHHHHHHHcC--CCCCCCCCccC
Confidence 3467889999987542100 112235668876 79999999999765 58999999874
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00028 Score=51.01 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=35.5
Q ss_pred CCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHh-CCcccccc
Q 017863 236 NPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLK-GNRLCEIC 300 (365)
Q Consensus 236 s~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~K-gn~~CEIC 300 (365)
..+++..|.||++... . ++.+||.. .+|+.|+.+|++.+ ....|++|
T Consensus 16 ~~~~~~~C~IC~~~~~------------~-p~~~~CgH-----~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQ------------K-PVTIDCGH-----NFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCS------------S-CEECTTSS-----EECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhC------------C-eEEeCCCC-----cchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999998753 2 34568765 68999999999864 46789998
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.21 E-value=6.5e-05 Score=56.09 Aligned_cols=52 Identities=29% Similarity=0.498 Sum_probs=39.9
Q ss_pred CCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHh-----CCccccccccccc
Q 017863 236 NPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLK-----GNRLCEICGQSAK 305 (365)
Q Consensus 236 s~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~K-----gn~~CEICk~~y~ 305 (365)
.-+++..|.||+..... ++.+||.. .+|+.|+.+|++.+ +...|++|+..+.
T Consensus 8 ~~~~~~~C~IC~~~~~~-------------p~~l~CgH-----~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTE-------------PLSLDCGH-----SLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSS-------------CCCCSSSC-----CCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCC-------------eeECCCCC-----HHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34567899999987532 34568765 68999999999863 3679999999874
No 31
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.18 E-value=0.0002 Score=58.88 Aligned_cols=59 Identities=19% Similarity=0.374 Sum_probs=37.5
Q ss_pred CCceeEcccCCccccc----c-cccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 240 ERVCRICHLGSEQLLE----T-TATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 240 E~~CRICh~~~e~~~e----~-~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
...|-||+........ . .........++.+||.- ..|..|+.+|++. +.+|++|+..|.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H-----~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH-----AFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSC-----EEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCc-----EECHHHHHHHHHc--CCcCcCCCCcce
Confidence 4579999877653100 0 00000112345567765 8999999999975 578999999974
No 32
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.10 E-value=0.00017 Score=51.42 Aligned_cols=54 Identities=22% Similarity=0.481 Sum_probs=38.0
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
++..|.||++......+ ....+..+||.. .+|..|+.+|++. +..|++|+..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~------~~~~~~~~~CgH-----~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQ------NGRLIVSTECGH-----VFCSQCLRDSLKN--ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHH------TTCCEEEETTSC-----EEEHHHHHHHHHH--CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccc------cCCCEEeCCCCC-----chhHHHHHHHHHc--CCCCCCCCccCC
Confidence 35679999987542100 112235568865 6999999999987 568999998874
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.93 E-value=0.00063 Score=55.55 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=38.0
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
++..|.||+..... ++.+||.. .+|+.|+.+|++ .+...|++|+..+..
T Consensus 51 ~~~~C~IC~~~~~~-------------p~~~~CgH-----~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR-------------PITTVCQH-----NVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS-------------EEECTTSC-----EEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC-------------cEEeeCCC-----cccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 35689999987642 45568865 689999999998 445689999999854
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.78 E-value=0.00054 Score=49.85 Aligned_cols=52 Identities=21% Similarity=0.527 Sum_probs=36.9
Q ss_pred CCCceeEccc-CCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 239 GERVCRICHL-GSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 239 ~E~~CRICh~-~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
++..|.||+. .... +....+.+||.. .+|+.|+.+|+.. +...|++|+..+.
T Consensus 2 ~~~~C~IC~~~~~~~---------~~~~~~~~~CgH-----~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRN---------PSLKLMVNVCGH-----TLCESCVDLLFVR-GAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHC---------SSCCEEECTTCC-----CEEHHHHHHHHHT-TSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCC---------CccCeecCCCCC-----HhHHHHHHHHHHc-CCCcCCCCCCccc
Confidence 3567999998 3321 112224468876 6899999999863 4678999999874
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.75 E-value=0.0007 Score=53.80 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=38.2
Q ss_pred CCCceeEcccCCcccccccccccCCCcccc-ccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQ-LGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~-lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
++..|.||+.... . ++. +||.. .+|..|+.+|++.+. ..|++|+..+.
T Consensus 21 ~~~~C~IC~~~~~------------~-p~~~~~CgH-----~FC~~Ci~~~~~~~~-~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLR------------D-ARLCPHCSK-----LCCFSCIRRWLTEQR-AQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCS------------S-EEECTTTCC-----EEEHHHHHHHHHHTC-SBCTTTCCBCC
T ss_pred CCCCCccCCcccc------------C-ccccCCCCC-----hhhHHHHHHHHHHCc-CCCCCCCCcCC
Confidence 4578999998764 2 344 68876 689999999998764 68999999984
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.72 E-value=0.00083 Score=57.38 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=36.6
Q ss_pred CCCceeEcccCCcccccccccccCCCccccc-cccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQL-GCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~l-PC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
.+..|.||+.... . ++.+ ||.. .+|..|+.+|++. +...|++|+..+.
T Consensus 53 ~~~~C~IC~~~~~------------~-p~~~~~CgH-----~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLK------------N-TMTTKECLH-----RFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCS------------S-EEEETTTCC-----EEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCcccChHhh------------C-cCEeCCCCC-----hhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 3568999988764 2 2333 7765 7899999999974 4678999999874
No 37
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.68 E-value=0.0006 Score=57.01 Aligned_cols=47 Identities=30% Similarity=0.545 Sum_probs=36.2
Q ss_pred CCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 240 ERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 240 E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
+..|.||+.... . ++.+||.. .+|..|+.+|++. ...|++|+..+..
T Consensus 53 ~~~C~iC~~~~~------------~-~~~~~CgH-----~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFI------------E-AVTLNCAH-----SFCSYCINEWMKR--KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCS------------S-EEEETTSC-----EEEHHHHHHHTTT--CSBCTTTCCBCCC
T ss_pred cCCCcccCcccC------------C-ceECCCCC-----CccHHHHHHHHHc--CCcCCCCCCcCCC
Confidence 457999998753 2 35568864 7999999999964 5679999998753
No 38
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.68 E-value=0.0011 Score=53.79 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=40.7
Q ss_pred CccCCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 233 FRENPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 233 ~~es~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
+.+..+++..|.||+..... ++.+||.- .+++.|+.+|++.+.. .|++|+..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~-------------p~~~~CgH-----~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 11 FDPPLESKYECPICLMALRE-------------AVQTPCGH-----RFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSS-------------EEECTTSC-----EEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred hccCCCCCCCCCcCChhhcC-------------eEECCcCC-----hhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 33344567799999977532 35568754 6899999999987653 89999998753
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.52 E-value=0.0018 Score=55.58 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=37.9
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
++..|.||+..... ++.+||.. .+|+.|+.+|++. +...|++|+..+..
T Consensus 77 ~~~~C~IC~~~~~~-------------pv~~~CgH-----~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-------------PVTTECFH-----NVCKDCLQRSFKA-QVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSS-------------EEECTTSC-----EEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcC-------------CEEcCCCC-----chhHHHHHHHHHh-CCCcCCCCCccCCC
Confidence 35689999987542 34568875 6899999999974 45689999999864
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.49 E-value=0.0011 Score=52.36 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=36.9
Q ss_pred CCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHh-CCccccccccccc
Q 017863 240 ERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLK-GNRLCEICGQSAK 305 (365)
Q Consensus 240 E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~K-gn~~CEICk~~y~ 305 (365)
...|.||+.... . +..+||.. .+|..|+.+|+..+ +...|++|+..+.
T Consensus 21 ~~~C~IC~~~~~------------~-p~~~~CgH-----~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIK------------E-PVSTKCDH-----IFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCS------------S-CCBCTTSC-----CCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhc------------C-eEECCCCC-----HHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 457999998753 2 34468765 68999999999864 4568999999875
No 41
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.48 E-value=0.0012 Score=51.73 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCCceeEcccCCcccccccccccCCCccccc-cccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQL-GCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~l-PC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
++..|.||+..... +..+ ||.. .+|..|+.+|++. ...|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-------------p~~~~~CgH-----~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI-------------AMIIPQCSH-----NYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS-------------EEECTTTCC-----EEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC-------------cCEECCCCC-----HhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 35789999987642 2333 7865 7899999999974 4689999998853
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.44 E-value=0.0022 Score=49.77 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=40.0
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
+++..|-||++.... .++...||.|. +.+++.|+.+|.+. +...|++|+..|..
T Consensus 9 ~~~~~CpICle~~~~-----------~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI-----------DDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCT-----------TTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCcc-----------ccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 467889999996532 22344588884 36899999998753 56799999999864
No 43
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.40 E-value=0.00059 Score=57.45 Aligned_cols=59 Identities=20% Similarity=0.390 Sum_probs=0.4
Q ss_pred CCceeEcccCCccccc-cc---cc-ccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 240 ERVCRICHLGSEQLLE-TT---AT-ASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 240 E~~CRICh~~~e~~~e-~~---~~-~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
...|-||+........ -. .. ....-.++.+||.- .+|..|+.+|++.+ .+|++|+..|.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H-----~FH~~CI~~Wl~~~--~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH-----AFHFHCISRWLKTR--QVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCc-----eEcHHHHHHHHHcC--CcCCCCCCeee
Confidence 4579999887643100 00 00 00111223346654 79999999999774 67999999874
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.23 E-value=0.0013 Score=52.48 Aligned_cols=48 Identities=15% Similarity=0.369 Sum_probs=37.2
Q ss_pred CCCceeEcccCCcccccccccccCCCccccc-cccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQL-GCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~l-PC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
++..|.||+..... ++.+ ||.. .+|..|+.+|++.+ ..|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~~-------------p~~~~~CgH-----~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-------------ATTIIECLH-----SFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS-------------EEEETTTCC-----EEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC-------------cCEeCCCCC-----hhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 46789999887632 3444 8875 68999999999754 789999999864
No 45
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.04 E-value=0.0037 Score=62.27 Aligned_cols=50 Identities=20% Similarity=0.519 Sum_probs=38.4
Q ss_pred CCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccccc
Q 017863 240 ERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNIT 308 (365)
Q Consensus 240 E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV~ 308 (365)
...|.||++... . +..+||.. ..|..|+.+|+.. ....|++|+..+....
T Consensus 332 ~~~C~ICle~~~------------~-pv~lpCGH-----~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDK------------D-VKIEPCGH-----LMCTSCLTSWQES-EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBC------------C-EEEETTCC-----EECHHHHHHHHHH-TCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCC------------C-eEEeCCCC-----hhhHHHHHHHHhc-CCCCCCCCCCccCCce
Confidence 478999987753 2 34569987 4699999999974 5678999999886543
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.97 E-value=0.0018 Score=51.87 Aligned_cols=54 Identities=24% Similarity=0.530 Sum_probs=38.4
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
++..|-||++....+.. ....+..+||.. .+|..|+.+|++.+ ..|++|+..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~------~~~~~~~~~CgH-----~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 59 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQ------NGRLIVSTECGH-----VFCSQCLRDSLKNA--NTCPTCRKKIN 59 (133)
T ss_dssp CSCBCTTTCCBHHHHHH------TTCCEEEETTCC-----EEEHHHHHHHHTTC--SBCTTTCCBCT
T ss_pred CCCCCcccChhhhCccc------cccCeEecCCCC-----hhhHHHHHHHHHhC--CCCCCCCCcCc
Confidence 46789999987542100 012235668876 79999999999654 58999999885
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.94 E-value=0.0063 Score=48.89 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=37.7
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
++..|.||+..... ++.+||.. .+|..|+.+|++.. ...|++|+..+..
T Consensus 22 ~~~~C~IC~~~~~~-------------p~~~~CgH-----~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILAD-------------PVETSCKH-----LFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSS-------------EEECTTSC-----EEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcC-------------cEEcCCCC-----cccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 35789999987632 34568765 68999999999874 4579999999753
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.91 E-value=0.00076 Score=54.24 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=37.4
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
++..|.||+.... .++.+||.. .+|+.|+.+|++. +...|++|+..+.
T Consensus 14 ~~~~C~iC~~~~~-------------~p~~~~CgH-----~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILV-------------EPVTLPCNH-----TLCKPCFQSTVEK-ASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCS-------------SCEECTTSC-----EECHHHHCCCCCT-TTSBCTTTCCBCH
T ss_pred CCCCCccCCcccC-------------ceeEcCCCC-----HHhHHHHHHHHhH-CcCCCCCCCcccC
Confidence 4578999997653 245568865 6999999999963 4578999999975
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.70 E-value=0.019 Score=44.64 Aligned_cols=65 Identities=9% Similarity=-0.040 Sum_probs=45.1
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccccc--cc-cCchh
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNI--TG-VGDYR 314 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV--~~-~~~~~ 314 (365)
.++-.|-||+.-..+ +..+||.- .+-+.|+++|+.. ..+|++|+..+..- .+ ...+.
T Consensus 12 p~~~~CpI~~~~m~d-------------PV~~~cGh-----tf~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~ 71 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-------------PVRLPSGT-----VMDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKE 71 (85)
T ss_dssp CTTTBCTTTCSBCSS-------------EEECTTSC-----EEEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHH
T ss_pred chheECcccCchhcC-------------CeECCCCC-----EECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHH
Confidence 357899999988742 45568743 5779999999985 56899999987532 11 12445
Q ss_pred hHHHHhhh
Q 017863 315 FMEEWNER 322 (365)
Q Consensus 315 fleeW~~~ 322 (365)
.+++|...
T Consensus 72 ~i~~~~~~ 79 (85)
T 2kr4_A 72 QIQAWMRE 79 (85)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66777643
No 50
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.38 E-value=0.0074 Score=55.91 Aligned_cols=52 Identities=25% Similarity=0.518 Sum_probs=40.1
Q ss_pred CCCCceeEcccCCcccccccccccCCCcccccccc-CcCccccccHHHHHHHHHHhCCccccccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCG-CKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNI 307 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~-CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV 307 (365)
+.-..|.||+.-... + +. |. |. ...|..|+.+|++.+++..|+.|+..+..-
T Consensus 178 ~~i~~C~iC~~iv~~-----------g--~~--C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQ-----------G--QS--CETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSS-----------C--EE--CSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCCcCcchhhHHhC-----------C--cc--cCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 347899999987532 2 23 53 64 489999999999988889999999987543
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.32 E-value=0.0054 Score=49.05 Aligned_cols=55 Identities=24% Similarity=0.523 Sum_probs=38.1
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
++...|-||+.......+ .......+||. ...|..|+.+|++.+ ..|++|+..+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~------~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQ------NGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHH------TTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccc------cCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCC
Confidence 456789999987543100 11223455665 479999999999765 58999998874
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.16 E-value=0.015 Score=46.75 Aligned_cols=65 Identities=6% Similarity=-0.092 Sum_probs=45.3
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccccc--cc-cCchhh
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNI--TG-VGDYRF 315 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV--~~-~~~~~f 315 (365)
++-.|-||+.-..+ +..+||. | ..+-+.|+++|+.. ..+|++|+..+..- .+ ...+..
T Consensus 21 ~~~~CpI~~~~m~d-------------PV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~ 81 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD-------------PVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEK 81 (98)
T ss_dssp TTTBCTTTCSBCSS-------------EEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHH
T ss_pred HhcCCcCccccccC-------------CeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHH
Confidence 47799999988742 4556876 1 25779999999975 56899999988531 11 124566
Q ss_pred HHHHhhh
Q 017863 316 MEEWNER 322 (365)
Q Consensus 316 leeW~~~ 322 (365)
+++|...
T Consensus 82 I~~~~~~ 88 (98)
T 1wgm_A 82 IQRWLAE 88 (98)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7788644
No 53
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.02 E-value=0.0097 Score=59.25 Aligned_cols=55 Identities=25% Similarity=0.536 Sum_probs=39.2
Q ss_pred CCCCCceeEcccCCcccccccccccCCCcccccccc---CcCccccccHHHHHHHHHHhCC---------cccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCG---CKDELGVAHSDCAEAWFKLKGN---------RLCEICGQSA 304 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~---CKGSLkyVH~~CLe~W~k~Kgn---------~~CEICk~~y 304 (365)
.++...|-||+....+ .+.+-...|. |+ +..|..||.+||+...+ -.|+.|++..
T Consensus 305 ee~~~ECaICys~~l~----------~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 305 DNEELRCNICFAYRLD----------GGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CCSCCSCSSSCCSSCT----------TCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred ccCCccCcccceeecC----------CCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 3467799999988642 1223233464 65 48999999999987543 4799999875
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.88 E-value=0.014 Score=52.17 Aligned_cols=63 Identities=6% Similarity=-0.020 Sum_probs=43.2
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccccc--cc-cCchhh
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNI--TG-VGDYRF 315 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV--~~-~~~~~f 315 (365)
..-.|-||+.-..+ +..+||.. .+-+.|+++|+...+. +|++|+..+..- .+ ......
T Consensus 207 ~~~~c~i~~~~~~d-------------Pv~~~~gh-----~f~~~~i~~~~~~~~~-~cP~~~~~~~~~~l~~n~~l~~~ 267 (281)
T 2c2l_A 207 DYLCGKISFELMRE-------------PCITPSGI-----TYDRKDIEEHLQRVGH-FNPVTRSPLTQEQLIPNLAMKEV 267 (281)
T ss_dssp STTBCTTTCSBCSS-------------EEECSSCC-----EEETTHHHHHHHHTCS-SCTTTCCCCCGGGCEECHHHHHH
T ss_pred cccCCcCcCCHhcC-------------CeECCCCC-----EECHHHHHHHHHHCCC-CCcCCCCCCchhcCcccHHHHHH
Confidence 46789999988742 45668753 5678999999987554 499999998531 11 124455
Q ss_pred HHHHh
Q 017863 316 MEEWN 320 (365)
Q Consensus 316 leeW~ 320 (365)
+++|.
T Consensus 268 i~~~~ 272 (281)
T 2c2l_A 268 IDAFI 272 (281)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 56665
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=94.77 E-value=0.015 Score=49.60 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=40.4
Q ss_pred CccCCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 233 FRENPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 233 ~~es~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
+.+..++.-.|-||+..... ++.+||.- .+.+.|+.+|++.+. ..|++|+..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~-------------pv~~~CgH-----~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALRE-------------AVQTPCGH-----RFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSS-------------EEECTTSC-----EEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred hccCCCCCCCCCCCChhhcC-------------cEECCCCC-----HHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 33444567799999987642 35567654 689999999998764 389999988753
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.53 E-value=0.0065 Score=49.23 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=35.6
Q ss_pred CCCceeEcccCCcccccccccccCCCccccc-cccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQL-GCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~l-PC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
++..|.||+..... ++.+ ||.. .+++.|+.+|++ ..|++|+..+.
T Consensus 21 ~~~~C~IC~~~~~~-------------pv~~~~CgH-----~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE-------------PVCLGGCEH-----IFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS-------------CBCCCSSSC-----CBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC-------------ccEeCCCCC-----HHHHHHHHHHhc----CCCcCCCCcCc
Confidence 46789999987642 3455 7764 689999999997 67999999984
No 57
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=94.39 E-value=0.042 Score=44.21 Aligned_cols=63 Identities=8% Similarity=0.016 Sum_probs=44.2
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc--ccc-cCchhh
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN--ITG-VGDYRF 315 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n--V~~-~~~~~f 315 (365)
++-.|-||+.-..+ +..+||.- .+-+.|+++|+. +..+|++|+..+.. +.+ ...+..
T Consensus 28 ~~~~CpI~~~~m~d-------------PV~~~cGh-----tf~r~~I~~~l~--~~~~cP~~~~~l~~~~L~pn~~Lk~~ 87 (100)
T 2kre_A 28 DEFRDPLMDTLMTD-------------PVRLPSGT-----IMDRSIILRHLL--NSPTDPFNRQTLTESMLEPVPELKEQ 87 (100)
T ss_dssp TTTBCTTTCSBCSS-------------EEEETTTE-----EEEHHHHHHHTT--SCSBCSSSCCBCCTTSSEECHHHHHH
T ss_pred HhhCCcCccCcccC-------------CeECCCCC-----EEchHHHHHHHH--cCCCCCCCCCCCChhhceECHHHHHH
Confidence 47799999988742 45568643 578999999997 36789999998853 111 124455
Q ss_pred HHHHhh
Q 017863 316 MEEWNE 321 (365)
Q Consensus 316 leeW~~ 321 (365)
++.|..
T Consensus 88 I~~~~~ 93 (100)
T 2kre_A 88 IQAWMR 93 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 677764
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.19 E-value=0.043 Score=43.17 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=44.6
Q ss_pred CCCCceeEcccCCcccccccccccCCCcccccc-ccCcCccccccHHHHHHHHHHh----CCccccc--cccc---cccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLG-CGCKDELGVAHSDCAEAWFKLK----GNRLCEI--CGQS---AKNI 307 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lP-C~CKGSLkyVH~~CLe~W~k~K----gn~~CEI--Ck~~---y~nV 307 (365)
..+-.|-||+.-.. . ++.+| |.. .+-+.|+++|+... +..+|++ |... ...+
T Consensus 5 ~~~~~CPI~~~~~~------------d-PV~~~~cGh-----~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEMK------------K-PVKNKVCGH-----TYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBCS------------S-EEEESSSCC-----EEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchhc------------C-CEEcCCCCC-----eecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC
Confidence 35678999998764 2 45555 754 57899999999875 4679999 9855 2333
Q ss_pred ccc-CchhhHHHHhh
Q 017863 308 TGV-GDYRFMEEWNE 321 (365)
Q Consensus 308 ~~~-~~~~fleeW~~ 321 (365)
.+. .....++.|..
T Consensus 67 ~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 67 IQDEALRRAIENHNK 81 (94)
T ss_dssp EECHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHH
Confidence 322 35566677764
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=93.93 E-value=0.014 Score=44.04 Aligned_cols=45 Identities=29% Similarity=0.608 Sum_probs=34.5
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
++..|.||+.... . ++.+||... .+...|+.+| ..|++|+..+..
T Consensus 23 ~~~~C~iC~~~~~------------~-~~~~pCgH~----~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI------------A-IVFVPCGHL----VTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC------------C-EEEETTCCB----CCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC------------C-EEEcCCCCh----hHHHHhhhcC------ccCCCcCcCccC
Confidence 3568999998653 2 345699762 3899999999 789999998754
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=93.89 E-value=0.011 Score=50.12 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=37.9
Q ss_pred CCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccc
Q 017863 236 NPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSA 304 (365)
Q Consensus 236 s~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y 304 (365)
..+++-.|.||+..... ++.+||.- .+++.|+.+|++. +...|++|+...
T Consensus 27 ~l~~~~~C~IC~~~~~~-------------pv~~~CgH-----~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR-------------PFQAQCGH-----RYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSS-------------EEECTTSC-----EEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcC-------------cEECCCCC-----ccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 34567799999987642 35667765 6899999999963 456899999864
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=93.73 E-value=0.02 Score=42.13 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=36.6
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNI 307 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV 307 (365)
....|.||++...+ ..++-+||... .+-..|+.+|.+. ...|++|+..+..+
T Consensus 6 ~~~~C~IC~~~~~~-----------~~~~~~pCgH~----~~C~~C~~~~~~~--~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 6 LLKPCSLCEKRPRD-----------GNIIHGRTGHL----VTCFHCARRLKKA--GASCPICKKEIQLV 57 (63)
T ss_dssp GGSBCTTTSSSBSC-----------EEEEETTEEEE----EECHHHHHHHHHT--TCBCTTTCCBCCEE
T ss_pred cCCCCcccCCcCCC-----------eEEEecCCCCH----hHHHHHHHHHHHh--CCcCCCcCchhhce
Confidence 46789999987532 12333498752 2678999999854 46899999987543
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=93.44 E-value=0.053 Score=48.58 Aligned_cols=64 Identities=6% Similarity=-0.023 Sum_probs=44.5
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccccc--cc-cCchhh
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNI--TG-VGDYRF 315 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV--~~-~~~~~f 315 (365)
++-.|.||+.-..+ +..+||.- .+=+.|+.+|+...+. +|++|+..+..- .+ ...+..
T Consensus 105 ~~f~CPI~~elm~D-------------PV~~~~Gh-----tfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~ 165 (179)
T 2f42_A 105 DYLCGKISFELMRE-------------PCITPSGI-----TYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEV 165 (179)
T ss_dssp GGGBCTTTCSBCSS-------------EEECTTSC-----EEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHH
T ss_pred HhhcccCccccCCC-------------CeECCCCC-----EECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHH
Confidence 46789999988742 45568743 5779999999987655 799999988532 21 124455
Q ss_pred HHHHhh
Q 017863 316 MEEWNE 321 (365)
Q Consensus 316 leeW~~ 321 (365)
++.|..
T Consensus 166 Ie~~~~ 171 (179)
T 2f42_A 166 IDAFIQ 171 (179)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 667753
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=93.07 E-value=0.033 Score=41.11 Aligned_cols=52 Identities=25% Similarity=0.416 Sum_probs=35.6
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNI 307 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV 307 (365)
++..|.||++...+ ..++.+||... ++=..|+.+|.+. +..|++|+..+..+
T Consensus 7 ~~~~C~IC~~~~~~-----------~~~~~~pCgH~----~~C~~C~~~~~~~--~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 7 AIEPCVICQGRPKN-----------GCIVHGKTGHL----MACFTCAKKLKKR--NKPCPVCRQPIQMI 58 (64)
T ss_dssp GGSCCTTTSSSCSC-----------EEEEETTEEEE----EECHHHHHHHHHT--TCCCTTTCCCCCEE
T ss_pred CcCCCCcCCCCCCC-----------EEEECCCCCCh----hhHHHHHHHHHHc--CCcCCCcCcchhce
Confidence 46689999987532 11223498752 2458999999964 46799999987543
No 64
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.03 E-value=0.021 Score=40.81 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=33.9
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
+++..|.||+..... +..+||.. .+++.|+.+| ...|++|+..+.
T Consensus 4 ~~~~~C~IC~~~~~~-------------p~~l~CgH-----~fC~~Ci~~~-----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-------------PKLLPCLH-----TLCSGCLEAS-----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC-------------CSCSTTSC-----CSBTTTCSSS-----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC-------------eEEcCCCC-----cccHHHHccC-----CCCCCcCCcEee
Confidence 456789999987532 35578865 5788998774 568999999874
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.77 E-value=0.11 Score=39.01 Aligned_cols=49 Identities=18% Similarity=0.493 Sum_probs=34.6
Q ss_pred CCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccccc
Q 017863 236 NPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNI 307 (365)
Q Consensus 236 s~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV 307 (365)
..++...|.||+.... . .+.+||... .+-..|+.+ ...|++|+..+..+
T Consensus 11 ~~~~~~~C~IC~~~~~------------~-~v~~pCgH~----~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTV------------N-WVLLPCRHT----CLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCC------------C-CEETTTTBC----CSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCC------------C-EEEECCCCh----hhhHHHHhc------CCCCCCCCcchhce
Confidence 3445789999998653 2 345699763 266789873 36899999987644
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.13 E-value=0.12 Score=38.77 Aligned_cols=44 Identities=30% Similarity=0.628 Sum_probs=31.8
Q ss_pred CCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 240 ERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 240 E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
+..|.||+.... . ++.+||... .+...|+.++ ..|++|+..+..
T Consensus 25 ~~~C~IC~~~~~------------~-~~~~pCgH~----~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI------------A-IVFVPCGHL----VTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC------------C-BCCSSSCCC----CBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC------------C-EEEecCCCH----HHHHHHhhCC------CCCccCCceecC
Confidence 457999998753 2 345698762 2789998643 789999998754
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=88.96 E-value=0.26 Score=38.22 Aligned_cols=50 Identities=20% Similarity=0.549 Sum_probs=36.4
Q ss_pred CCCceeEcccCCcccccccccccCCCccccc-cccCcCccccccHHHHHHHHHHh---C---Cccccc--ccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQL-GCGCKDELGVAHSDCAEAWFKLK---G---NRLCEI--CGQSA 304 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~l-PC~CKGSLkyVH~~CLe~W~k~K---g---n~~CEI--Ck~~y 304 (365)
+...|.||++.... ...+.+ ||.. ...+.|+.+++..+ + ...|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~~-----------~~~~~l~~CgH-----~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPV-----------EQMTTIAQCQC-----IFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBG-----------GGEEEETTTTE-----EEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCccccc-----------ccceEcCCCCC-----cccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 35679999987542 223332 7876 78999999999864 2 469999 99884
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=88.12 E-value=0.081 Score=51.48 Aligned_cols=45 Identities=31% Similarity=0.685 Sum_probs=34.8
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKN 306 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~n 306 (365)
++..|.||+.... . ++.+||... .+...|+.+| ..|++|+..+..
T Consensus 294 ~~~~C~IC~~~~~------------~-~v~lpCgH~----~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV------------S-VVFIPCGHL----VVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC------------C-EEEETTCCE----EECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC------------c-eEEcCCCCh----hHhHHHHhcC------CcCCCCCCCccC
Confidence 4689999998753 2 345699873 3889999988 689999998754
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=81.35 E-value=0.4 Score=36.71 Aligned_cols=45 Identities=20% Similarity=0.514 Sum_probs=32.6
Q ss_pred CCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccccccc
Q 017863 240 ERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNI 307 (365)
Q Consensus 240 E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV 307 (365)
+..|.||+.... . .+.+||... .+=..|+.+| ..|++|+..+...
T Consensus 18 ~~~C~IC~~~~~------------~-~v~~pCgH~----~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI------------N-STFCPCGHT----VCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC------------C-EEEETTCBC----CBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC------------c-EEEECCCCH----HHHHHHHHhc------CcCCCCCchhhCe
Confidence 568999997653 2 344599763 2557899887 3899999988654
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=81.31 E-value=0.87 Score=43.49 Aligned_cols=51 Identities=25% Similarity=0.337 Sum_probs=38.1
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccc--cccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEI--CGQSAK 305 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEI--Ck~~y~ 305 (365)
..+..|-||+.-... |.....|.- -.=+.|+.+|++..+...|++ |+..+.
T Consensus 179 ~~el~CPIcl~~f~D------------PVts~~CGH-----sFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEA------------PLISRKCNH-----VFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSS------------EEEESSSCC-----EEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccC------------CeeeCCCCC-----cccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 356799999987642 232235653 477899999998777889999 999874
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=79.79 E-value=0.95 Score=33.33 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=31.2
Q ss_pred CceeEcccCCcccccccccccCCCccccc-cccCcCccccccHHHHHHHHHHhCCccccccccccc
Q 017863 241 RVCRICHLGSEQLLETTATASTTVNLIQL-GCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAK 305 (365)
Q Consensus 241 ~~CRICh~~~e~~~e~~~~~~~s~~LI~l-PC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~ 305 (365)
-.|.||++...+ +..+ +|. ...=+.|+++|++..+ +|++++....
T Consensus 4 ~~CpIs~~~m~d-------------PV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRR-------------PVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSS-------------EEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCC
T ss_pred EEecCCCCCCCC-------------CEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCC
Confidence 357788877642 2333 333 2577999999998765 4999998874
No 72
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=79.31 E-value=0.76 Score=34.87 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=35.2
Q ss_pred CCCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHH--hCCcccccccccc
Q 017863 236 NPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL--KGNRLCEICGQSA 304 (365)
Q Consensus 236 s~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~--Kgn~~CEICk~~y 304 (365)
.+.....|.||..+. .+|. | .+=-+.+|..||.-.+.. ++.+.|..|...-
T Consensus 8 ~~~~~~~C~vC~~~~--------------~ll~--C--d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 8 NLAPGARCGVCGDGT--------------DVLR--C--THCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTCCCTTTSCCT--------------TCEE--C--SSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCCcCCCCCCC--------------eEEE--C--CCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 344566799997542 2443 3 344579999999877754 4789999998654
No 73
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.69 E-value=6.9 Score=32.21 Aligned_cols=57 Identities=23% Similarity=0.423 Sum_probs=40.3
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCcccc-ccHHHHHHHHHHhCCcccccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGV-AHSDCAEAWFKLKGNRLCEICGQSAKNIT 308 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLky-VH~~CLe~W~k~Kgn~~CEICk~~y~nV~ 308 (365)
...+|.||-+.... ...++++. -|+= -+| |=+.|++-=++ .++..|+.|+.+|+-..
T Consensus 15 ~~qiCqiCGD~VG~--------~~~Ge~FV-AC~e---C~FPvCrpCyEYErk-eG~q~CpqCktrYkr~k 72 (93)
T 1weo_A 15 DGQFCEICGDQIGL--------TVEGDLFV-ACNE---CGFPACRPCYEYERR-EGTQNCPQCKTRYKRLR 72 (93)
T ss_dssp SSCBCSSSCCBCCB--------CSSSSBCC-SCSS---SCCCCCHHHHHHHHH-TSCSSCTTTCCCCCCCT
T ss_pred CCCccccccCcccc--------CCCCCEEE-eeec---cCChhhHHHHHHHHh-ccCccccccCCcccccc
Confidence 46899999877654 23466777 5642 133 78999875554 47889999999997543
No 74
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=57.56 E-value=2.5 Score=33.49 Aligned_cols=54 Identities=30% Similarity=0.524 Sum_probs=35.2
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCcccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSA 304 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y 304 (365)
++...|.||..+... ..+.+|. |. +--..+|..|+.-=..-.+.+.|+.|....
T Consensus 23 ~~~~~C~vC~~~~s~---------~~~~ll~--CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQ---------NSNVILF--CD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSC---------SEEEEEE--CS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCC---------CCCCEEE--CC--CCCchhhcccCCCCccCCCceECccccCcc
Confidence 456899999987532 1234444 43 334579999986433345788999997653
No 75
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=55.82 E-value=2.1 Score=32.78 Aligned_cols=53 Identities=30% Similarity=0.538 Sum_probs=34.2
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHHhCCccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQS 303 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~ 303 (365)
.....|.||..+... ..+.+|. |. +=-..+|..|+.-=..-++.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~---------~~~~ll~--CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQ---------NSNVILF--CD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCC---------SSSCEEE--CS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCC---------CCCCEEE--CC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 456789999987532 1234444 33 33458999998643333578889999754
No 76
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=53.10 E-value=3.1 Score=31.81 Aligned_cols=49 Identities=29% Similarity=0.689 Sum_probs=31.7
Q ss_pred CCCCCCceeEcccCCcccccccccccCCCcccccccc---CcCccccccHHHHHHHHHH--hCCccccccccc
Q 017863 236 NPDGERVCRICHLGSEQLLETTATASTTVNLIQLGCG---CKDELGVAHSDCAEAWFKL--KGNRLCEICGQS 303 (365)
Q Consensus 236 s~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~---CKGSLkyVH~~CLe~W~k~--Kgn~~CEICk~~ 303 (365)
++.+...| ||..... +.+|. |- |.. .|+|..|+. +.. ++.+.|+.|...
T Consensus 12 d~~~~~~C-~C~~~~~------------g~MI~--CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSY------------GEMIG--CDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CTTSCCCS-TTCCCSC------------SSEEC--CSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCCCEE-ECCCCCC------------CCEeE--eeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCcc
Confidence 44556788 8987542 33443 44 541 599999986 332 367899999765
No 77
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.01 E-value=3.7 Score=33.17 Aligned_cols=52 Identities=25% Similarity=0.540 Sum_probs=32.1
Q ss_pred CCCCCCceeEcccCCcccccccccccCCCcccc-ccccCcCccccccHHHHHHHHHH--hCCcccccccccc
Q 017863 236 NPDGERVCRICHLGSEQLLETTATASTTVNLIQ-LGCGCKDELGVAHSDCAEAWFKL--KGNRLCEICGQSA 304 (365)
Q Consensus 236 s~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~-lPC~CKGSLkyVH~~CLe~W~k~--Kgn~~CEICk~~y 304 (365)
++.+...| ||..... +.+|. --|.|+. .|+|..|+. +.. ++.+.|+.|...-
T Consensus 32 d~~e~~yC-iC~~~~~------------g~MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY------------GEMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCC------------SCCCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCC------------CCEeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34556788 8977542 33343 1233642 599999986 332 3678999997653
No 78
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.64 E-value=1.5 Score=34.94 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=33.0
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHH--HHhCCcccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWF--KLKGNRLCEICGQSA 304 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~--k~Kgn~~CEICk~~y 304 (365)
..+...|.||...... +.+|. | .+--+..|..||..=+ .-++.+.|+.|....
T Consensus 13 ~~~~~~C~vC~~~~~~-----------~~ll~--C--D~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-----------DKLLF--C--DGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCCSSSCCSGGG-----------GGCEE--C--TTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCCCCCccCCCcCCC-----------CCEEE--c--CCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 3456789999987532 23333 4 2334589999985211 124678899997653
No 79
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.50 E-value=0.8 Score=36.28 Aligned_cols=54 Identities=19% Similarity=0.418 Sum_probs=36.0
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHH------HhCCccccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFK------LKGNRLCEICGQSAK 305 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k------~Kgn~~CEICk~~y~ 305 (365)
....|.+|...... ..+.+|. |.+=-..+|+.||.-=+. -++.+.|..|....+
T Consensus 15 ~~~~C~vC~~~~~~---------~~~~ll~----CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVA---------SGNQLVE----CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCC---------TTCCEEE----CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCC---------CCCceEE----CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 36789999987542 1233443 334445889999875543 357899999987764
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=47.44 E-value=3.9 Score=30.10 Aligned_cols=48 Identities=23% Similarity=0.576 Sum_probs=32.1
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHH--HhCCccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFK--LKGNRLCEICGQS 303 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k--~Kgn~~CEICk~~ 303 (365)
.....|.+|.... .++. | .+--+..|..||..=+. -++.+.|+.|.+.
T Consensus 9 ~~~~~C~vC~~~g--------------~ll~--C--D~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGG--------------EIIL--C--DTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCS--------------SEEE--C--SSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCC--------------cEEE--C--CCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3467899998743 2343 3 34446899999875332 2477899999754
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=43.96 E-value=2.4 Score=31.28 Aligned_cols=48 Identities=25% Similarity=0.549 Sum_probs=30.9
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHH--HhCCccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFK--LKGNRLCEICGQS 303 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k--~Kgn~~CEICk~~ 303 (365)
..+..|.+|..+. .+|. |.+--+..|..||..=+. -++.+.|..|...
T Consensus 7 ~~~~~C~vC~~~g--------------~ll~----Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGG--------------ELLC----CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCS--------------SCBC----CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCC--------------CEEE----cCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3467899998642 2333 333445799999874322 2467889999765
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.07 E-value=4.4 Score=28.31 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=28.1
Q ss_pred ceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHH--HhCCcccccccc
Q 017863 242 VCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFK--LKGNRLCEICGQ 302 (365)
Q Consensus 242 ~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k--~Kgn~~CEICk~ 302 (365)
.|.||....+. +.+|. | .+--+..|..||.-=+. -++.+.|+.|..
T Consensus 2 ~C~vC~~~~~~-----------~~ll~--C--d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-----------DKLIL--C--DECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-----------SCCEE--C--TTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-----------CCEEE--C--CCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58889877532 33443 3 24446899999842111 235678998864
No 83
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=42.94 E-value=19 Score=30.77 Aligned_cols=49 Identities=22% Similarity=0.412 Sum_probs=34.1
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHH------HHH---hCCccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAW------FKL---KGNRLCEICGQS 303 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W------~k~---Kgn~~CEICk~~ 303 (365)
...+..||||..+.+ |+- | ..--+..|..||.+= -++ .+.+.|-.|...
T Consensus 54 Dg~~~~C~vC~dGG~--------------Llc--C--d~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN--------------LIC--C--DFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSE--------------EEE--C--SSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCe--------------eEe--c--CCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 334667999997642 443 3 355578999999974 233 578999999543
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=42.70 E-value=2.3 Score=37.88 Aligned_cols=48 Identities=25% Similarity=0.599 Sum_probs=33.1
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHH--hCCcccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL--KGNRLCEICGQSA 304 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~--Kgn~~CEICk~~y 304 (365)
.+..|.+|+.++ .++. |.+--+..|..||...+.. ++.+.|+.|...-
T Consensus 6 ~~~~C~~C~~~g--------------~ll~----Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGG--------------DLLC----CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCE--------------EEEE----CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC--------------ceEE----cCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456799998653 2333 4444578999998655542 5678999998754
No 85
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=41.91 E-value=2.8 Score=36.50 Aligned_cols=48 Identities=25% Similarity=0.596 Sum_probs=32.4
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHH--hCCcccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL--KGNRLCEICGQSA 304 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~--Kgn~~CEICk~~y 304 (365)
.+..|.+|+.++ .++. |.+--+..|..||..-+.. ++.+.|+.|...-
T Consensus 3 ~~~~C~~C~~~g--------------~ll~----Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGG--------------ELLC----CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCS--------------SCEE----CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCC--------------eeee----cCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 356799998653 2333 3344468999998655442 4678999998653
No 86
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=41.07 E-value=2.2 Score=31.31 Aligned_cols=54 Identities=19% Similarity=0.379 Sum_probs=34.8
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHH-----HhCCccccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFK-----LKGNRLCEICGQS 303 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k-----~Kgn~~CEICk~~ 303 (365)
+.++..|.||..+... ..+.+|. |.+=-..+|+.|+.-=+. .++.+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~---------~~~~ll~----Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSE---------APNEMVI----CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCB---------TTBCEEE----CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCC---------CCCCEEE----CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4567889999987432 1244544 334445899999874332 3577889988754
No 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.24 E-value=14 Score=29.87 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=25.4
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHH
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAW 288 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W 288 (365)
....|.+|+........ ...++||. |.+=-+..|..||..+
T Consensus 4 p~~~C~~C~~~~~~~~~-----g~~~~Ll~----C~~C~~~~H~~Cl~~~ 44 (112)
T 3v43_A 4 PIPICSFCLGTKEQNRE-----KKPEELIS----CADCGNSGHPSCLKFS 44 (112)
T ss_dssp CCSSBTTTCCCTTCCTT-----SCCCCCEE----CTTTCCEECHHHHTCC
T ss_pred cCccccccCCchhhCcC-----CCchhceE----hhhcCCCCCCchhcCC
Confidence 35689999987643110 12345665 4444568999999643
No 88
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=34.96 E-value=22 Score=30.84 Aligned_cols=47 Identities=23% Similarity=0.420 Sum_probs=33.9
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHH---------HhCCccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFK---------LKGNRLCEICGQS 303 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k---------~Kgn~~CEICk~~ 303 (365)
.+..||+|..+.+ ||- | ..=-+..|..||..=+. ..+.+.|..|...
T Consensus 62 ~~d~C~vC~~GG~--------------Llc--C--D~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEGGN--------------LIC--C--DFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCCSS--------------EEE--C--SSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCCCc--------------EEe--C--CCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4678999998753 453 3 34456899999996552 3588999999743
No 89
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=34.61 E-value=8.7 Score=31.31 Aligned_cols=55 Identities=24% Similarity=0.457 Sum_probs=31.2
Q ss_pred CceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHH-----HhCCc------cccccccc
Q 017863 241 RVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFK-----LKGNR------LCEICGQS 303 (365)
Q Consensus 241 ~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k-----~Kgn~------~CEICk~~ 303 (365)
..|.||+.+....... ...++||. |. +=-...|..||..+.. .++.+ .|.+|+..
T Consensus 2 ~~C~~C~~~~~~n~k~----g~~~~Li~--C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~ 67 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKS----GRPEELVS--CA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTS 67 (114)
T ss_dssp CCCSSSCCBTTBCTTT----CCCCCCEE--CS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCC
T ss_pred CcCccCCCCccccccC----CCCCCCeE--eC--CCCCccchhhCCChhhhhhccCCCccCccccCccCccccc
Confidence 5699998775321000 11345665 43 3345789999987643 23444 46666653
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=33.90 E-value=2.9 Score=31.13 Aligned_cols=48 Identities=27% Similarity=0.539 Sum_probs=31.2
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHH--HhCCccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFK--LKGNRLCEICGQS 303 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k--~Kgn~~CEICk~~ 303 (365)
..+..|.||..+. .+|. | .+--+..|..||..=+. -++.+.|+.|...
T Consensus 6 ~~~~~C~vC~~~g--------------~ll~--C--D~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGG--------------ELIC--C--DGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCS--------------SCEE--C--SSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCC--------------CEEE--c--CCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4577899999653 2443 3 34445899999863222 2467889999754
No 91
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=33.80 E-value=5.6 Score=29.88 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=31.6
Q ss_pred CCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHH--hCCcccccccccc
Q 017863 239 GERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL--KGNRLCEICGQSA 304 (365)
Q Consensus 239 ~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~--Kgn~~CEICk~~y 304 (365)
+...|.||..... ...+|. | .+=-.+.|..|+.--... .+.+.|+.|....
T Consensus 17 ~~~~C~~C~~~~~-----------~~~mi~--C--D~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDD-----------GSPMIG--C--DDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCS-----------SCCEEE--C--SSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCC-----------CCCEEE--c--CCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3457999987643 122333 3 334479999998543322 2568899997654
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=33.14 E-value=6 Score=31.73 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=26.2
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHH
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFK 290 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k 290 (365)
..+..|.||....+. .++|. | .+=-+..|..||..++.
T Consensus 5 ~~~~~C~~C~~~g~~-----------~~ll~--C--~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-----------LDQFF--C--TTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCT-----------TTSEE--C--SSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCC-----------cCCeE--C--CCCCCCcChHHhCCccc
Confidence 367899999987641 23443 4 44457899999987764
No 93
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=32.10 E-value=9.2 Score=31.60 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=27.4
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHH--hCCcccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL--KGNRLCE 298 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~--Kgn~~CE 298 (365)
...+..|.+|..+ +++|. |..++--++.|..||. +.. ++.+.|+
T Consensus 12 ~~~~~~C~~C~~~--------------G~ll~--CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp 57 (107)
T 4gne_A 12 QMHEDYCFQCGDG--------------GELVM--CDKKDCPKAYHLLCLN--LTQPPYGKWECP 57 (107)
T ss_dssp CSSCSSCTTTCCC--------------SEEEE--CCSTTCCCEECTGGGT--CSSCCSSCCCCG
T ss_pred CCCCCCCCcCCCC--------------CcEeE--ECCCCCCcccccccCc--CCcCCCCCEECC
Confidence 3456789999843 33554 8633334699999997 432 3555555
No 94
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=31.49 E-value=17 Score=27.32 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=21.0
Q ss_pred CCCCCceeEcccCCcccccccccccCCCccccccc--cCcCccccccHHHH
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQLGC--GCKDELGVAHSDCA 285 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC--~CKGSLkyVH~~CL 285 (365)
.+....|-+|+.+... +..+. -| .|+ .|+|..|+
T Consensus 5 ~~~~~~C~~C~~p~~~-----------~~~mI-~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVND-----------DQDAI-LCEASCQ---KWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCT-----------TSCEE-EBTTTTC---CEEEHHHH
T ss_pred CCCcCcCccCCCccCC-----------CCCeE-ecccCcc---ccCchhcc
Confidence 3456789999987542 22343 47 466 69999996
No 95
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.70 E-value=3.1 Score=29.92 Aligned_cols=47 Identities=30% Similarity=0.635 Sum_probs=29.4
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHH--HhCCcccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFK--LKGNRLCEICGQ 302 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k--~Kgn~~CEICk~ 302 (365)
..+..|.+|.... .+|. | .+--+..|..||..=+. -++.+.|..|..
T Consensus 7 ~~~~~C~vC~~~g--------------~ll~--C--d~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSG--------------QLLM--C--DTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSS--------------CCEE--C--SSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCC--------------eEEE--c--CCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3567899998753 2333 3 24446899999863222 245677887753
No 96
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.67 E-value=19 Score=27.56 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=27.1
Q ss_pred ccccccccCcCccccccHHHHHHHHHHhCCcccccccccccccccc
Q 017863 265 NLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNITGV 310 (365)
Q Consensus 265 ~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV~~~ 310 (365)
+++..| .|||.|.|.- .++...|+-|+..|...-++
T Consensus 9 eiL~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~dGI 44 (67)
T 2jny_A 9 EVLACP-KDKGPLRYLE---------SEQLLVNERLNLAYRIDDGI 44 (67)
T ss_dssp CCCBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEETTE
T ss_pred HHhCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCCCCE
Confidence 356667 8999988752 35778999999999876654
No 97
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=26.16 E-value=23 Score=35.22 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=31.2
Q ss_pred cccccccCcCccccccHHH--HHHHHHH---hCCccccccccccccccccCchhhHHHHh
Q 017863 266 LIQLGCGCKDELGVAHSDC--AEAWFKL---KGNRLCEICGQSAKNITGVGDYRFMEEWN 320 (365)
Q Consensus 266 LI~lPC~CKGSLkyVH~~C--Le~W~k~---Kgn~~CEICk~~y~nV~~~~~~~fleeW~ 320 (365)
.|..||+-+ ...|..| |+.|+.. +..+.|+||...+.. .......++.++.
T Consensus 258 ri~~PvRg~---~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~-~dL~ID~~~~~IL 313 (371)
T 3i2d_A 258 RMKYPSKSI---NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL-ENLAISEFVDDIL 313 (371)
T ss_dssp BCSSEEEET---TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG-GGEEEBHHHHHHH
T ss_pred cccccCcCC---cCCCcceECHHHHHHHhhcCCceeCCCCCcccCH-HHeeEcHHHHHHH
Confidence 466687764 3678877 4446543 578999999988742 2222344554444
No 98
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=24.60 E-value=5.1 Score=29.49 Aligned_cols=49 Identities=27% Similarity=0.594 Sum_probs=28.4
Q ss_pred CCCCCceeEcccCCcccccccccccCCCcccc-ccccCcCccccccHHHHHHHHHH--hCCcccccccc
Q 017863 237 PDGERVCRICHLGSEQLLETTATASTTVNLIQ-LGCGCKDELGVAHSDCAEAWFKL--KGNRLCEICGQ 302 (365)
Q Consensus 237 ~e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~-lPC~CKGSLkyVH~~CLe~W~k~--Kgn~~CEICk~ 302 (365)
+.+...| ||..... +.+|. -.|.|+ ..++|..|+. +.. ++...|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~------------g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY------------GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC------------SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC------------CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456677 8876532 33343 123354 2589999987 332 36788888864
No 99
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=24.45 E-value=25 Score=34.78 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=30.8
Q ss_pred cccccccCcCccccccHHH--HHHHHH---HhCCccccccccccccccccCchhhHHHHh
Q 017863 266 LIQLGCGCKDELGVAHSDC--AEAWFK---LKGNRLCEICGQSAKNITGVGDYRFMEEWN 320 (365)
Q Consensus 266 LI~lPC~CKGSLkyVH~~C--Le~W~k---~Kgn~~CEICk~~y~nV~~~~~~~fleeW~ 320 (365)
.|..||+-+ ...|..| |+.|+. .+..+.|+||+..+.. .......++.++.
T Consensus 224 ri~~P~Rg~---~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~-~dL~ID~~~~~IL 279 (360)
T 4fo9_A 224 RLTIPCRAV---TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY-ESLILDGLFMEIL 279 (360)
T ss_dssp BCSSEEEET---TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG-GGEEEBHHHHHHH
T ss_pred eeccCCcCC---CCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH-HHeEEcHHHHHHH
Confidence 466677643 3567766 455554 3578999999988752 2222344554554
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=23.81 E-value=12 Score=31.82 Aligned_cols=52 Identities=19% Similarity=0.408 Sum_probs=32.1
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHH---hCCcccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL---KGNRLCEICGQSA 304 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~---Kgn~~CEICk~~y 304 (365)
+....| ||+...+. .+..|. | .+--.|.|..|+.---.. .+...|+.|...-
T Consensus 6 ~~~~~C-~C~~~~~~----------~~~mi~--C--d~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDE----------SKFYIG--C--DRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCT----------TSCEEE--C--TTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCC----------CCCEeE--C--CCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 356789 99876432 233344 4 233479999998532222 4578999998653
No 101
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.45 E-value=55 Score=24.81 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=31.3
Q ss_pred CCCCceeEcccCCcccccccccccCCCccccccccCcCccccccHHHHHHHHHH---hCCcccccccccc
Q 017863 238 DGERVCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKL---KGNRLCEICGQSA 304 (365)
Q Consensus 238 e~E~~CRICh~~~e~~~e~~~~~~~s~~LI~lPC~CKGSLkyVH~~CLe~W~k~---Kgn~~CEICk~~y 304 (365)
.....| ||....+. .+..|. |. .=-.|.|..|+.-=-.. -....|+.|....
T Consensus 10 ~~~~~C-~C~~~~d~----------~~~MIq--Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNV----------NHFMIE--CG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCS----------SSCEEE--BT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCC----------CCceEE--cC--CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 456677 89876531 133343 43 22379999998532222 1467899998764
No 102
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=22.29 E-value=37 Score=21.43 Aligned_cols=13 Identities=15% Similarity=0.754 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhe
Q 017863 347 MACLVIAFVLPWF 359 (365)
Q Consensus 347 LAcmViAFVi~Wl 359 (365)
+..++.+|+++|+
T Consensus 8 l~~vv~~F~icW~ 20 (33)
T 2ki9_A 8 LGLVLAVLLICWF 20 (33)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHh
Confidence 5567788999996
No 103
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.11 E-value=29 Score=18.82 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=9.1
Q ss_pred ccccccccccc
Q 017863 296 LCEICGQSAKN 306 (365)
Q Consensus 296 ~CEICk~~y~n 306 (365)
.|++|+..|..
T Consensus 3 ~C~~C~k~f~~ 13 (27)
T 1znf_A 3 KCGLCERSFVE 13 (27)
T ss_dssp BCSSSCCBCSS
T ss_pred cCCCCCCcCCC
Confidence 69999999853
No 104
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.61 E-value=29 Score=18.99 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=9.8
Q ss_pred cccccccccccc
Q 017863 295 RLCEICGQSAKN 306 (365)
Q Consensus 295 ~~CEICk~~y~n 306 (365)
-.|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 469999999953
No 105
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.75 E-value=30 Score=26.45 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=26.3
Q ss_pred ccccccccCcCccccccHHHHHHHHHHhCCcccccccccccccccc
Q 017863 265 NLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNITGV 310 (365)
Q Consensus 265 ~LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV~~~ 310 (365)
+++..| .|||.|.|.= ..+...|+-|+..|...-++
T Consensus 7 ~iL~CP-~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2jr6_A 7 DILVCP-VTKGRLEYHQ---------DKQELWSRQAKLAYPIKDGI 42 (68)
T ss_dssp CCCBCS-SSCCBCEEET---------TTTEEEETTTTEEEEEETTE
T ss_pred hheECC-CCCCcCeEeC---------CCCEEEcCCCCcEecCCCCe
Confidence 355656 7888888742 34778999999999876654
No 106
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.24 E-value=29 Score=19.05 Aligned_cols=12 Identities=25% Similarity=0.767 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 017863 295 RLCEICGQSAKN 306 (365)
Q Consensus 295 ~~CEICk~~y~n 306 (365)
-.|++|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 469999999853
No 107
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=20.08 E-value=27 Score=26.76 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=26.0
Q ss_pred cccccccCcCccccccHHHHHHHHHHhCCcccccccccccccccc
Q 017863 266 LIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNITGV 310 (365)
Q Consensus 266 LI~lPC~CKGSLkyVH~~CLe~W~k~Kgn~~CEICk~~y~nV~~~ 310 (365)
++..| .|||.|.|.= .++...|+-|+..|...-++
T Consensus 8 iL~CP-~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGI 42 (69)
T 2pk7_A 8 ILACP-ICKGPLKLSA---------DKTELISKGAGLAYPIRDGI 42 (69)
T ss_dssp TCCCT-TTCCCCEECT---------TSSEEEETTTTEEEEEETTE
T ss_pred heeCC-CCCCcCeEeC---------CCCEEEcCCCCcEecCcCCe
Confidence 45556 7999888742 35678999999999876654
Done!