Query 017864
Match_columns 365
No_of_seqs 142 out of 456
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:05:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02291 phospho-2-dehydro-3-d 100.0 3E-136 6E-141 1024.3 28.7 290 75-364 18-307 (474)
2 TIGR01358 DAHP_synth_II 3-deox 100.0 9E-136 2E-140 1016.0 27.2 287 77-364 1-287 (443)
3 PF01474 DAHP_synth_2: Class-I 100.0 4E-134 9E-139 1003.2 15.6 289 76-364 1-290 (439)
4 COG3200 AroG 3-deoxy-D-arabino 100.0 5E-131 1E-135 961.2 23.1 289 75-364 3-291 (445)
5 TIGR01309 L30P_arch 50S riboso 63.8 5.2 0.00011 36.4 2.3 109 86-211 27-146 (152)
6 PRK13296 tRNA CCA-pyrophosphor 60.6 15 0.00033 37.8 5.1 63 219-292 128-202 (360)
7 PLN03033 2-dehydro-3-deoxyphos 57.5 17 0.00037 36.5 4.8 51 127-193 10-65 (290)
8 PRK09261 phospho-2-dehydro-3-d 51.2 9.6 0.00021 39.0 2.0 32 332-364 157-188 (349)
9 PRK12755 phospho-2-dehydro-3-d 41.8 16 0.00034 37.6 1.9 32 332-364 158-189 (353)
10 PF00793 DAHP_synth_1: DAHP sy 39.3 21 0.00045 35.0 2.2 32 332-364 108-139 (270)
11 PF04136 Sec34: Sec34-like fam 39.2 28 0.0006 31.4 2.8 41 268-320 94-134 (157)
12 PRK06049 rpl30p 50S ribosomal 37.3 42 0.0009 30.7 3.7 109 85-211 28-148 (154)
13 PRK05722 glucose-6-phosphate 1 36.3 22 0.00048 37.8 2.0 21 181-207 292-312 (495)
14 PRK01759 glnD PII uridylyl-tra 34.6 60 0.0013 36.6 5.1 63 220-292 340-414 (854)
15 PRK12457 2-dehydro-3-deoxyphos 33.4 73 0.0016 32.0 4.9 47 131-193 14-65 (281)
16 TIGR00034 aroFGH phospho-2-deh 31.9 29 0.00062 35.7 1.9 30 334-364 154-183 (344)
17 cd00468 HIT_like HIT family: H 31.3 1.2E+02 0.0025 23.1 4.8 55 129-184 17-75 (86)
18 PRK13298 tRNA CCA-pyrophosphor 29.0 1.5E+02 0.0032 31.2 6.5 26 219-244 128-164 (417)
19 TIGR01693 UTase_glnD [Protein- 27.9 98 0.0021 34.6 5.3 63 220-292 333-406 (850)
20 TIGR01942 pcnB poly(A) polymer 27.9 1.7E+02 0.0037 30.7 6.7 58 220-292 165-235 (410)
21 TIGR02692 tRNA_CCA_actino tRNA 27.0 1.4E+02 0.0029 31.2 5.8 23 220-242 167-197 (466)
22 PRK10885 cca multifunctional t 26.5 96 0.0021 32.1 4.6 26 220-245 129-165 (409)
23 PRK12822 phospho-2-dehydro-3-d 25.6 37 0.0008 35.1 1.4 30 334-364 159-188 (356)
24 PRK13397 3-deoxy-7-phosphohept 25.1 87 0.0019 30.7 3.8 30 159-194 30-59 (250)
25 PRK00275 glnD PII uridylyl-tra 25.0 1.2E+02 0.0025 34.6 5.3 63 220-292 363-438 (895)
26 PF05598 DUF772: Transposase d 24.8 1.4E+02 0.003 22.8 4.2 24 270-293 24-47 (77)
27 TIGR00871 zwf glucose-6-phosph 24.5 68 0.0015 34.2 3.2 21 181-207 281-301 (482)
28 PRK12756 phospho-2-dehydro-3-d 24.3 43 0.00093 34.5 1.6 28 336-364 160-187 (348)
29 COG0537 Hit Diadenosine tetrap 23.7 1.2E+02 0.0027 26.5 4.2 63 140-209 44-110 (138)
30 PF08203 RNA_polI_A14: Yeast R 22.8 54 0.0012 27.0 1.6 18 97-114 59-76 (76)
31 PRK13297 tRNA CCA-pyrophosphor 22.7 1.5E+02 0.0033 30.7 5.2 59 220-292 140-213 (364)
32 PRK13473 gamma-aminobutyraldeh 21.9 2.2E+02 0.0047 29.3 6.2 34 109-142 319-353 (475)
33 TIGR01362 KDO8P_synth 3-deoxy- 21.7 2.1E+02 0.0045 28.5 5.7 53 133-207 2-56 (258)
34 PRK03059 PII uridylyl-transfer 21.7 1.4E+02 0.0031 33.8 5.1 63 220-292 343-418 (856)
35 COG1342 Predicted DNA-binding 21.4 1E+02 0.0023 26.7 3.1 29 113-141 65-94 (99)
36 PRK13299 tRNA CCA-pyrophosphor 21.2 2.2E+02 0.0047 29.4 5.9 58 220-292 153-223 (394)
37 PF04361 DUF494: Protein of un 20.4 1E+02 0.0022 28.0 3.1 39 276-314 38-82 (155)
38 PF06974 DUF1298: Protein of u 20.1 66 0.0014 28.3 1.8 39 198-237 112-150 (153)
39 PRK00227 glnD PII uridylyl-tra 20.1 1.5E+02 0.0034 33.0 4.9 58 221-291 289-357 (693)
No 1
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=100.00 E-value=2.6e-136 Score=1024.32 Aligned_cols=290 Identities=88% Similarity=1.400 Sum_probs=286.0
Q ss_pred CCCCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhccChhhHH
Q 017864 75 GKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIR 154 (365)
Q Consensus 75 ~~Wsp~sWr~~pa~QqP~ypD~~~L~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~ 154 (365)
..|+|+|||++||+|||+|||+++|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|+
T Consensus 18 ~~W~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCAE~F~~~~~~~ir 97 (474)
T PLN02291 18 KKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIR 97 (474)
T ss_pred CCCChhhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchhhhhhhhCHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHH
Q 017864 155 DTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSA 234 (365)
Q Consensus 155 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~vdGv~LPsYRGD~VNg~~f~~~aR~PDP~RLL~AY~~Sa 234 (365)
+|+++|+|||.||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||+
T Consensus 98 ~k~~~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRSs~~E~~dGv~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~Sa 177 (474)
T PLN02291 98 DTFRVLLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSA 177 (474)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCCHhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccc
Q 017864 235 ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYE 314 (365)
Q Consensus 235 aTLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE 314 (365)
+|||+||+|..|||||||++++||++|+++++.+++|++++++|+++|+||++||++.+...+++++||||||||||+||
T Consensus 178 atlnllRa~~~gg~adl~~~~~W~~~fv~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~~~l~~~~~yTSHEaLlL~YE 257 (474)
T PLN02291 178 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGLTTDHPIMTTTEFWTSHECLLLPYE 257 (474)
T ss_pred HHHHHHHHHhcCCchhhccccccchhhhccCchhhHHHHHHHHHHHHHHHHHHcCCCccccccccCceeechHhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999987556889999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchHHHHhhhccCceeeecC
Q 017864 315 QALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKNG 364 (365)
Q Consensus 315 ~aLtR~d~~~g~~Y~~SaH~lWIGeRTRqlDGAHVeflrgI~NPIGvKvG 364 (365)
+||||.|+.+|.|||||||||||||||||||||||||||||+||||||||
T Consensus 258 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvG 307 (474)
T PLN02291 258 QALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVS 307 (474)
T ss_pred hhhhccCCCCCCcccccccccccccccCCCCccHHHHHhcCCCCeeEEEC
Confidence 99999999999999999999999999999999999999999999999999
No 2
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=100.00 E-value=9e-136 Score=1015.98 Aligned_cols=287 Identities=62% Similarity=1.073 Sum_probs=284.6
Q ss_pred CCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhccChhhHHHH
Q 017864 77 WALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDT 156 (365)
Q Consensus 77 Wsp~sWr~~pa~QqP~ypD~~~L~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~k 156 (365)
|+|+|||++||+|||+|||+++|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++|
T Consensus 1 w~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~aFlLQgGDCAE~F~~~~~~~i~~k 80 (443)
T TIGR01358 1 WSPQSWRSKPAAQQPTYPDAGALEAVLDTLRSLPPLVFAGEIRRLKRQLAQVAEGEAFLLQGGDCAESFKDCTADHIRNK 80 (443)
T ss_pred CCchhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhCCCEEEEeCccccCchhhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 017864 157 FRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAAT 236 (365)
Q Consensus 157 ~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~vdGv~LPsYRGD~VNg~~f~~~aR~PDP~RLL~AY~~SaaT 236 (365)
+++|+|||+||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||++|
T Consensus 81 ~~~llqMa~vl~~~~~~PVVkVGRiAGQyAKPRS~~~E~~~G~~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~saat 160 (443)
T TIGR01358 81 LRVLLQMAVVLTYGASLPVVKVGRIAGQYAKPRSAPTETRDGVTLPSYRGDIINGPAFTEAARVPDPRRLVRAYHQSAAT 160 (443)
T ss_pred HHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCChhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccc
Q 017864 237 LNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQA 316 (365)
Q Consensus 237 Ln~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~a 316 (365)
||+||+|..|||||||++++||++|+++++.+++|++++++|+++|+||++||++.++ .+++++||||||||||+||+|
T Consensus 161 ln~lRa~~~gg~adl~~~~~W~~~f~~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~-~l~~~~~~TSHEaLlL~YE~a 239 (443)
T TIGR01358 161 LNLVRALTTGGYADLHQVHYWNLEFVGYSPAGARYEKLASEIDEALRFMSACGLAPRY-NLQTVEFYTSHEALLLPYEEA 239 (443)
T ss_pred HHHHHHHhcCCchhhcccchhhhhhhhcCchhhHHHHHHHHHHHHHHHHHHcCCCccc-ccCcCceeechHhhccchhhh
Confidence 9999999999999999999999999999999999999999999999999999999886 688999999999999999999
Q ss_pred cccccCCCCCcccCCCCceeeccccCCCCchHHHHhhhccCceeeecC
Q 017864 317 LTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKNG 364 (365)
Q Consensus 317 LtR~d~~~g~~Y~~SaH~lWIGeRTRqlDGAHVeflrgI~NPIGvKvG 364 (365)
|||.|+.+|.|||||||||||||||||||||||||||||+||||||||
T Consensus 240 ltR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvG 287 (443)
T TIGR01358 240 LTRVDSRSGGWFDLSAHMLWIGERTRQLDGAHVEFLRGVRNPIGIKVG 287 (443)
T ss_pred hhcccCCCCCcccccccccccccccCCCCchHHHHHhcCCCCeeEEEC
Confidence 999999999999999999999999999999999999999999999998
No 3
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=100.00 E-value=4.2e-134 Score=1003.18 Aligned_cols=289 Identities=60% Similarity=1.075 Sum_probs=234.1
Q ss_pred CCCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhccChhhHHH
Q 017864 76 KWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRD 155 (365)
Q Consensus 76 ~Wsp~sWr~~pa~QqP~ypD~~~L~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~ 155 (365)
+|+|+||+++||+|||.|||+.+|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++
T Consensus 1 ~W~p~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~~~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~I~~ 80 (439)
T PF01474_consen 1 EWSPSSWRSKPAAQQPEYPDPDALAEVLAKLASLPPLVFAGEIRRLREQLADVARGEAFLLQGGDCAESFAECTADHIRD 80 (439)
T ss_dssp ---HHHHHTS--SS---S-HHHHH-HHHHHHTTS--SS-HHHHHHHHHHHHHHHTTSSEEEEEEESS--STT-SHHHHHH
T ss_pred CCChhhHHhCCcccCCCCcCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcCCeEEEeCCCcccChhhcChHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHHH
Q 017864 156 TFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAA 235 (365)
Q Consensus 156 k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~vdGv~LPsYRGD~VNg~~f~~~aR~PDP~RLL~AY~~Saa 235 (365)
|+++|+|||.||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||++|++
T Consensus 81 k~~~Llqma~vL~~~~~~PVVrVGRiAGQyAKPRS~~~E~vdG~~LPsyRGD~VN~~~~~~~aR~PDP~RlL~aY~~Saa 160 (439)
T PF01474_consen 81 KFKLLLQMALVLTYGAGKPVVRVGRIAGQYAKPRSSPTETVDGVELPSYRGDIVNGPEFTPEARRPDPQRLLRAYFHSAA 160 (439)
T ss_dssp HHHHHHHHHHHHHHHHTS-EEEEEEBSS------S-SB----TTSSB----TTTS-SSSSHHHHS--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEechhhhcccCCCCCCccCCCCccCcccccccccCCCCChhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCccceeecccccccccc
Q 017864 236 TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLD-HPAMTSTEFWTSHECLLLPYE 314 (365)
Q Consensus 236 TLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~-~~~~~~~~~~TSHEaLLL~YE 314 (365)
|||+||+|++|||||||++++||++|+++++.+++|++++++|++||+||++||++.+ ++.+.+++||||||||||+||
T Consensus 161 tLn~lRa~~~~G~Adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~g~~~~~~~~~~~~~~~tSHEaLlL~YE 240 (439)
T PF01474_consen 161 TLNLLRAFASGGFADLHHVHQWNLDFVRNSPLGERYEELADEIDDALRFMRACGVDSDSSPALRTVDFYTSHEALLLDYE 240 (439)
T ss_dssp HHHHHHHHHTSCCG-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTT-----GGGST---EEEEEE---HHHH
T ss_pred HHHHHHHHhcCChhhhcccccchhhhhcCChhhhHHHHHHHHHHHHHHHHHHcCCCccccccccccccccchHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999975 566899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchHHHHhhhccCceeeecC
Q 017864 315 QALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKNG 364 (365)
Q Consensus 315 ~aLtR~d~~~g~~Y~~SaH~lWIGeRTRqlDGAHVeflrgI~NPIGvKvG 364 (365)
+||||.|+.+|.||+||||||||||||||+|||||||||||+||||||||
T Consensus 241 ~altR~d~~~g~~y~~SaH~~WIGeRTRq~dgAHve~~~gi~NPigvKvG 290 (439)
T PF01474_consen 241 EALTRQDSDTGRWYNTSAHFLWIGERTRQLDGAHVEFLRGIANPIGVKVG 290 (439)
T ss_dssp HHTEEEESSSEEEEETT-SEEEE-TTT--TTSHHHHHHHHB-S-EEEEE-
T ss_pred hhhccccCCCCCccccccceeeecccccCCchhHHHHHhhccCccceeeC
Confidence 99999999999999999999999999999999999999999999999998
No 4
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-131 Score=961.23 Aligned_cols=289 Identities=62% Similarity=1.047 Sum_probs=285.9
Q ss_pred CCCCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhccChhhHH
Q 017864 75 GKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIR 154 (365)
Q Consensus 75 ~~Wsp~sWr~~pa~QqP~ypD~~~L~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~ 154 (365)
+.|+|.||+++|++|||.|||..+|+.|.++|+++|||||++|+++||++||+||.|+|||||||||||+|+++++++||
T Consensus 3 ~~w~p~swr~kpi~Q~p~ypd~~~l~~v~a~L~~~PplvfAgEar~Lk~~LA~Va~g~AfLLQgGDCAEsf~~~~a~~Ir 82 (445)
T COG3200 3 TTWLPNSWRAKPIQQQPTYPDAQALARVEARLRSYPPLVFAGEARRLQEQLARVAKGEAFLLQGGDCAESFADHGADNIR 82 (445)
T ss_pred cccCcchhhcCchhcCCCCCCHHHHHHHHHHHhcCCCeeecHHHHHHHHHHHHHhcCceEEEeCCcHHHHHHhcccHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHH
Q 017864 155 DTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSA 234 (365)
Q Consensus 155 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~vdGv~LPsYRGD~VNg~~f~~~aR~PDP~RLL~AY~~Sa 234 (365)
+++|+|+|||+||+|++++|||||||||||||||||+++|++||++|||||||||||.+|++++|+|||+||++||.+|+
T Consensus 83 d~frvllqMAvVLtfa~~~PVvKVgRIAGQfAKPRSs~~e~~g~vtLpsYRGDiiNG~e~~~~~R~pdP~R~l~aY~qsa 162 (445)
T COG3200 83 DNFRVLLQMAVVLTFAGSRPVVKVGRIAGQFAKPRSSDHEQLGGVTLPSYRGDIINGIEFDAEAREPDPERLLKAYAQSA 162 (445)
T ss_pred HHHHHHHHHHHHHHhccCCceEEeeeecccccCCCCCchhccCCeeccccccccccCccCChhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccc
Q 017864 235 ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYE 314 (365)
Q Consensus 235 aTLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE 314 (365)
+|||+||+|++||||||+.+|+||++||++|+++++|++++++|+++|+||++||++.+ |.++.++||||||||||+||
T Consensus 163 AtlNLlRafa~gG~A~L~~vh~W~l~Fv~~sp~~~rY~~la~~I~~~l~FM~A~Gv~~~-~~lre~~~ytSHEaLLL~YE 241 (445)
T COG3200 163 ATLNLLRAFASGGLADLENVHRWNLGFVKNSPQGARYEALADRISETLAFMRACGVTND-PSLRETEFYTSHEALLLDYE 241 (445)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCC-cccccccchhhhHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999874 77899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchHHHHhhhccCceeeecC
Q 017864 315 QALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKNG 364 (365)
Q Consensus 315 ~aLtR~d~~~g~~Y~~SaH~lWIGeRTRqlDGAHVeflrgI~NPIGvKvG 364 (365)
+||||.|+.+|.||+|||||+||||||||+|||||||+|||.||||||||
T Consensus 242 eam~R~ds~s~~~Yd~SaHmlWIGeRTRq~D~AHVe~~rgv~NPig~K~G 291 (445)
T COG3200 242 EAMLRLDSTSGQWYDTSAHMLWIGERTRQPDGAHVEFLRGVKNPIGVKIG 291 (445)
T ss_pred HHHhhhccCCCceeccccceeeecccccCCChhHHHHHHhcCCccccccC
Confidence 99999999999999999999999999999999999999999999999998
No 5
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=63.82 E-value=5.2 Score=36.39 Aligned_cols=109 Identities=23% Similarity=0.407 Sum_probs=73.5
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHH--HHHHHHHHHHhCCCeeEEecCCccchhhccChhhHHHHHHH--HH
Q 017864 86 KALQLPEYPDKAQLETVLKTLEDFPPLVFAGEA--RSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRV--LL 161 (365)
Q Consensus 86 pa~QqP~ypD~~~L~~v~~~L~~lPPLV~a~Ei--~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~k~~~--Ll 161 (365)
..-|....+|.++ +...|+...|+|+.+|+ +.+++.+-. +|+ +.||. ..|.+.|++++.+ +.
T Consensus 27 ri~~~V~v~~tp~---~~gML~kV~~yV~~ge~~~~tv~~Li~k--RG~---~~g~~------~ltd~~i~e~~g~~~ie 92 (152)
T TIGR01309 27 RVNHCVLYPETPT---YLGMLQKVKDYVTWGEIDEDTLELLIRK--RGR---LVGGD------KVTDEYVKEVTGYESVD 92 (152)
T ss_pred cCCCEEEEeCCHH---HHHHHHHhHhheeEecCCHHHHHHHHHH--hcc---ccCCC------cCCHHHHHHHcCCccHH
Confidence 3445566666644 55667777899999985 556666665 554 23663 4666788887665 77
Q ss_pred HHHHHHhhcC-------CCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCC
Q 017864 162 QMGVVLMFGG-------QMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNING 211 (365)
Q Consensus 162 qMa~vL~~g~-------~~PVVkVGRiAGQfAKPRS~~~E~vdGv~LPsYRGD~VNg 211 (365)
.|+..|..+. =+|+.++-=--|-|.+-+..++ .+|-.+- ||||-||.
T Consensus 93 dl~~~i~~~~~~f~~~~~~~~FrL~pPr~G~~~~~k~~~--~~gG~~G-~r~~~In~ 146 (152)
T TIGR01309 93 ELAKALVEGEIKLSEAGLKPVFRLHPPRKGFKGGIKTPY--RDGGELG-YRGEKINE 146 (152)
T ss_pred HHHHHHHcCCCCccccCccCceeCCCCCccccccccccc--ccCCCCc-ccHHHHHH
Confidence 7777776543 5677777777788875555666 2354554 99999995
No 6
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=60.58 E-value=15 Score=37.82 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=38.0
Q ss_pred CCCChHHHHHHHHHHHH-----------HHHHHHhhhc-CCcccccccccchhhhhccCchhhHHHHHHHHHHHHHHHHH
Q 017864 219 RVPDPERLIRAYCQSAA-----------TLNLLRSFAT-GGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMA 286 (365)
Q Consensus 219 R~PDP~RLL~AY~~Saa-----------TLn~lRa~~~-gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~i~~al~Fm~ 286 (365)
=.-||-|||+|+..++. |++.|+.... +.+..+..-.-| .+...+...-...+++|.
T Consensus 128 F~EDPLRILRa~RFaarL~~~gF~ie~eT~~~i~~~~~~~~L~~vs~ERI~-----------~El~kiL~~p~~~l~~L~ 196 (360)
T PRK13296 128 FIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTGELNHLTRERLH-----------IEFVKALNNPKIFFTTLK 196 (360)
T ss_pred cccCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhhhhhhhcCCHHHHH-----------HHHHHHHhChHHHHHHHH
Confidence 36799999999999984 8888887542 333332221111 122223223345678899
Q ss_pred HhcCCC
Q 017864 287 AAGLTL 292 (365)
Q Consensus 287 a~G~~~ 292 (365)
.+|+-.
T Consensus 197 ~~glL~ 202 (360)
T PRK13296 197 ELEALK 202 (360)
T ss_pred HcCCHH
Confidence 998743
No 7
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=57.45 E-value=17 Score=36.48 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=35.8
Q ss_pred HHhCCCeeEEecCCcc-chhhccChhhHHHHHHHHHHHHHHHhhc---CCCCeEeeeccccCCCC-CCCCcc
Q 017864 127 EAAMGNAFLLQGGDCA-ESFKEFNANNIRDTFRVLLQMGVVLMFG---GQMPIIKVGRMAGQFAK-PRSDPF 193 (365)
Q Consensus 127 ~vA~G~AFlLQGGDCA-EsF~e~~~~~I~~k~~~LlqMa~vL~~g---~~~PVVkVGRiAGQfAK-PRS~~~ 193 (365)
++..++-|+|=+|=|+ |+- ..++.+|..|... .+.++|+ -|=|.| |||+++
T Consensus 10 ~~~~~~~~~lIAGPC~iEs~------------e~~~~~A~~lk~~~~~~g~~~i~----kgsfkKApRTSp~ 65 (290)
T PLN03033 10 QLKAAEPFFLLAGPNVIESE------------EHILRMAKHIKDISTKLGLPLVF----KSSFDKANRTSSK 65 (290)
T ss_pred hcCCCCCeEEEecCChhcCH------------HHHHHHHHHHHHHHHhCCCcEEE----EeeccCCCCCCCC
Confidence 3446777889999886 332 2345555555543 4789998 889999 999976
No 8
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=51.18 E-value=9.6 Score=39.04 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=29.5
Q ss_pred CCceeeccccCCCCchHHHHhhhccCceeeecC
Q 017864 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKNG 364 (365)
Q Consensus 332 aH~lWIGeRTRqlDGAHVeflrgI~NPIGvKvG 364 (365)
--|+|||-||-+ +-.|.++++|+.=|||+|=|
T Consensus 157 vs~~~IGARt~e-sq~hr~~asg~~~PVg~Kng 188 (349)
T PRK09261 157 ISWGAIGARTTE-SQVHRELASGLSCPVGFKNG 188 (349)
T ss_pred cceeeeccchhc-CHHHHHHhcCCCCeeEecCC
Confidence 459999999998 79999999999999999966
No 9
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=41.78 E-value=16 Score=37.59 Aligned_cols=32 Identities=34% Similarity=0.576 Sum_probs=28.9
Q ss_pred CCceeeccccCCCCchHHHHhhhccCceeeecC
Q 017864 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKNG 364 (365)
Q Consensus 332 aH~lWIGeRTRqlDGAHVeflrgI~NPIGvKvG 364 (365)
-.|.+||-||-+ +--|.|+++|+.-|||+|=|
T Consensus 158 vs~~aIGARt~e-sq~hre~aSgl~~PVgfKng 189 (353)
T PRK12755 158 ISWGAIGARTTE-SQTHREMASGLSMPVGFKNG 189 (353)
T ss_pred hhheeeccchhc-CHHHHHHhcCCCCeeEecCC
Confidence 447889999988 79999999999999999966
No 10
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=39.34 E-value=21 Score=34.95 Aligned_cols=32 Identities=31% Similarity=0.548 Sum_probs=27.3
Q ss_pred CCceeeccccCCCCchHHHHhhhccCceeeecC
Q 017864 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKNG 364 (365)
Q Consensus 332 aH~lWIGeRTRqlDGAHVeflrgI~NPIGvKvG 364 (365)
.-++|||-||=+ +-.|.+.+++..-||++|=|
T Consensus 108 vd~lqIgAr~~~-n~~ll~~as~~~~pV~~K~g 139 (270)
T PF00793_consen 108 VDWLQIGARLME-NQDLLEAASGTGKPVGFKNG 139 (270)
T ss_dssp ESEEEE-GGGTT-CHHHHHHHHCTSSEEEEEE-
T ss_pred CcEEEECcchhc-CHHHHHHhccCCCeEEeccC
Confidence 349999999877 79999999999999999976
No 11
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=39.20 E-value=28 Score=31.42 Aligned_cols=41 Identities=32% Similarity=0.639 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccccc
Q 017864 268 GDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRR 320 (365)
Q Consensus 268 ~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~aLtR~ 320 (365)
.+.|..+..+||++|.||... |..... |.-++-|.+.|||-
T Consensus 94 ~~~F~~~L~~LD~cl~Fl~~h------~~fkea------~~Y~~rf~q~ltRA 134 (157)
T PF04136_consen 94 SDSFKPMLSRLDECLEFLEEH------PNFKEA------EVYLIRFRQCLTRA 134 (157)
T ss_pred chHHHHHHHHHHHHHHHHHHh------hhhhhh------HHHHHHHHHHHHHH
Confidence 457899999999999999874 543334 55567999999985
No 12
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=37.34 E-value=42 Score=30.69 Aligned_cols=109 Identities=23% Similarity=0.405 Sum_probs=69.2
Q ss_pred CccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHH--HHHHHHHHHHhCCCeeEEecCCccchhhccChhhHHHHHHH--H
Q 017864 85 KKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEA--RSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRV--L 160 (365)
Q Consensus 85 ~pa~QqP~ypD~~~L~~v~~~L~~lPPLV~a~Ei--~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~k~~~--L 160 (365)
...-|-...+|.+ ++...|+...|+|+.+|+ ..+++.|.. +|+ +-|+. ..|.+.|..++.+ +
T Consensus 28 ~ki~~~V~v~~tp---~~~GML~kV~~~V~~ge~~~~tv~~Li~k--RG~---~~g~~------~ltd~~i~e~~g~~~i 93 (154)
T PRK06049 28 HRVNHCVLVPETP---SYKGMLQKVKDYVTWGEIDADTLAELLRK--RGR---LEGNK------KLTDEYVKENTGYDSI 93 (154)
T ss_pred CcCCCEEEEeCCH---HHHHHHHhhhceeEEeeCchHHHHHHHHH--hCc---ccCCC------CCCHHHHHHhcCCccH
Confidence 3444556666664 456667778899999984 556666665 554 33432 5566667666555 6
Q ss_pred HHHHHHHhhcC--------CCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCC
Q 017864 161 LQMGVVLMFGG--------QMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNING 211 (365)
Q Consensus 161 lqMa~vL~~g~--------~~PVVkVGRiAGQfAKPRS~~~E~vdGv~LPsYRGD~VNg 211 (365)
..|+..|..+. =+|+.++-=--|-|.+ ...++ .+|-.+- ||||.||.
T Consensus 94 edl~~~i~~~~~~fk~~~~~~~~FrL~pPr~G~~~-~k~~~--~~gG~~G-~r~~~In~ 148 (154)
T PRK06049 94 EELAEALVEGEIKLKDLPGLKPVFRLHPPRGGFGG-IKRPF--KEGGELG-YRGEKINE 148 (154)
T ss_pred HHHHHHHHhCCCCHHHhhcccCceecCCcchhhhh-ccccc--ccCCCCC-ccHHHHHH
Confidence 66776665443 4577777766788843 33444 2455565 99999995
No 13
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=36.30 E-value=22 Score=37.84 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=15.4
Q ss_pred cccCCCCCCCCcccccCCeeccCccCc
Q 017864 181 MAGQFAKPRSDPFEVKNGVKLPSYKGD 207 (365)
Q Consensus 181 iAGQfAKPRS~~~E~vdGv~LPsYRGD 207 (365)
+=|||.+= .++|..+|.||-+
T Consensus 292 VrGQY~~g------~~~g~~~~gY~~e 312 (495)
T PRK05722 292 VRGQYTAG------WIGGKPVPGYREE 312 (495)
T ss_pred eeccccCC------CCCCCCCCCccCC
Confidence 35999642 2478999999975
No 14
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=34.59 E-value=60 Score=36.61 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=37.4
Q ss_pred CCChHHHHHHHHHHHH---------HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHH---HHHHHHHHHH
Q 017864 220 VPDPERLIRAYCQSAA---------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHR---VDEALGFMAA 287 (365)
Q Consensus 220 ~PDP~RLL~AY~~Saa---------TLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~---i~~al~Fm~a 287 (365)
..||.|||+++..++. |++.||.-.. ..+..+...++..+++.++... ...+|+.|..
T Consensus 340 ~~dp~riLr~fr~~a~~~~~~i~~~t~~~i~~~~~----------~~~~~l~~~~~eR~ef~kiL~~~~~~~~~l~~M~~ 409 (854)
T PRK01759 340 EQQPESILDLFFYLTQYPQAEIHSTTLRQLRLALE----------QLQQPLCELPAARERFLRLFNQPNAIKRALVPMHQ 409 (854)
T ss_pred hhCHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHH----------hccchhccCHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 5799999999987654 6676664211 1122222333444455555433 3467889999
Q ss_pred hcCCC
Q 017864 288 AGLTL 292 (365)
Q Consensus 288 ~G~~~ 292 (365)
+|+-.
T Consensus 410 ~GvL~ 414 (854)
T PRK01759 410 YGVLT 414 (854)
T ss_pred hCCHH
Confidence 88743
No 15
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=33.43 E-value=73 Score=32.00 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=29.8
Q ss_pred CCeeEEecCCcc-chhhccChhhHHHHHHHHHHHHHHHh---hcCCCCeEeeeccccCCCC-CCCCcc
Q 017864 131 GNAFLLQGGDCA-ESFKEFNANNIRDTFRVLLQMGVVLM---FGGQMPIIKVGRMAGQFAK-PRSDPF 193 (365)
Q Consensus 131 G~AFlLQGGDCA-EsF~e~~~~~I~~k~~~LlqMa~vL~---~g~~~PVVkVGRiAGQfAK-PRS~~~ 193 (365)
++-|+|-+|=|+ |+- ..++++|..|. ...+.++|. -|-|-| |||+++
T Consensus 14 ~~~~~~iaGPCsvEs~------------e~~~~iA~~lk~i~~~~g~~~~f----K~sf~KapRTSp~ 65 (281)
T PRK12457 14 DLPFVLFGGINVLESL------------DFTLDVCGEYVEVTRKLGIPFVF----KASFDKANRSSIH 65 (281)
T ss_pred CCceEEEecCCcccCH------------HHHHHHHHHHHHHHHHCCCcEEe----eeccCCCCCCCCC
Confidence 345788888875 332 22444555443 345777766 688999 599986
No 16
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=31.91 E-value=29 Score=35.66 Aligned_cols=30 Identities=37% Similarity=0.628 Sum_probs=26.6
Q ss_pred ceeeccccCCCCchHHHHhhhccCceeeecC
Q 017864 334 MLWVGERTRQLDGAHVEFLRGIANPLGIKNG 364 (365)
Q Consensus 334 ~lWIGeRTRqlDGAHVeflrgI~NPIGvKvG 364 (365)
|.+||-||-+ .--|-|+.+|+.-|||.|=|
T Consensus 154 w~aIGARt~e-sq~hRelaSgl~~PVgfKng 183 (344)
T TIGR00034 154 WGAIGARTTE-SQVHRELASGLSCPVGFKNG 183 (344)
T ss_pred hccccCcccc-CHHHHHHHhCCCCceEecCC
Confidence 6699999977 45999999999999999965
No 17
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=31.28 E-value=1.2e+02 Score=23.10 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=41.0
Q ss_pred hCCCeeEEecCCccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEee----eccccC
Q 017864 129 AMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKV----GRMAGQ 184 (365)
Q Consensus 129 A~G~AFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkV----GRiAGQ 184 (365)
..|...++- =...++|.+++++.+.+-++++.++...|....+.+-+.+ |-.+||
T Consensus 17 ~~gh~lIip-k~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~ 75 (86)
T cd00468 17 APGHVLVCP-KRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQ 75 (86)
T ss_pred CCCcEEEeC-chhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCC
Confidence 446666665 6678899999999999999999999999865545444443 556666
No 18
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=29.00 E-value=1.5e+02 Score=31.18 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHHHHH-----------HHHHHHhhh
Q 017864 219 RVPDPERLIRAYCQSAA-----------TLNLLRSFA 244 (365)
Q Consensus 219 R~PDP~RLL~AY~~Saa-----------TLn~lRa~~ 244 (365)
=.-||-|||+|+..|+. |+.+|+...
T Consensus 128 F~EDPLRiLRa~RFaar~~~lgF~i~~~T~~~i~~~~ 164 (417)
T PRK13298 128 FIEDPLRVLRVARFAALLVHLGFKIAKETMILMCIMV 164 (417)
T ss_pred cccCHHHHHHHHHHHHHhccCCCccCHHHHHHHHHHh
Confidence 36799999999998874 888888755
No 19
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=27.95 E-value=98 Score=34.64 Aligned_cols=63 Identities=25% Similarity=0.291 Sum_probs=38.4
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHH---HHHHHHHHHHHh
Q 017864 220 VPDPERLIRAYCQSAA--------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAH---RVDEALGFMAAA 288 (365)
Q Consensus 220 ~PDP~RLL~AY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~---~i~~al~Fm~a~ 288 (365)
.-||.|||+++..++. |++.|+.... .+. ..+.......+++.++.. ....+|+.|..+
T Consensus 333 ~eDPlriLR~~rfaa~~~~~i~~~T~~~i~~~~~----~l~------~~~~~~er~~~ef~~iL~~~~~~~~~l~~m~~~ 402 (850)
T TIGR01693 333 ERDPALLLRLFAIAAQRGLPIHPAALRQLTASLP----LLP------TPLREDPEARELFLELLTSGNGTVRALRAMNRA 402 (850)
T ss_pred hhCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcC------chhhcCHHHHHHHHHHHcCCCchHHHHHHHHHh
Confidence 5799999999988874 7777776332 011 111122233445555543 345679999999
Q ss_pred cCCC
Q 017864 289 GLTL 292 (365)
Q Consensus 289 G~~~ 292 (365)
|+=.
T Consensus 403 gvL~ 406 (850)
T TIGR01693 403 GVLG 406 (850)
T ss_pred CCHH
Confidence 8744
No 20
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=27.86 E-value=1.7e+02 Score=30.72 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHH-----HHHHHHHHH
Q 017864 220 VPDPERLIRAYCQSAA--------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHR-----VDEALGFMA 286 (365)
Q Consensus 220 ~PDP~RLL~AY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~-----i~~al~Fm~ 286 (365)
.-||-|||+|...|+. |.+.|+.+... +.+.+..+-+.++..- -..++.+|.
T Consensus 165 ~EDPlRiLRAvRFaa~LgF~Ie~~T~~~I~~~a~~---------------L~~vs~eRI~~El~Kll~~~~~~~~l~~L~ 229 (410)
T TIGR01942 165 QEDPVRMLRALRFSVKLEFTIDESTARPIRESAPL---------------LKGIPPARLFEEILKLLFSGRSAALFRMLC 229 (410)
T ss_pred cccHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5699999999999986 88888875421 2222332334443332 236777888
Q ss_pred HhcCCC
Q 017864 287 AAGLTL 292 (365)
Q Consensus 287 a~G~~~ 292 (365)
.+|+-.
T Consensus 230 ~~gll~ 235 (410)
T TIGR01942 230 GYQLLE 235 (410)
T ss_pred HcCCHH
Confidence 888743
No 21
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=26.99 E-value=1.4e+02 Score=31.18 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=18.0
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHh
Q 017864 220 VPDPERLIRAYCQSAA--------TLNLLRS 242 (365)
Q Consensus 220 ~PDP~RLL~AY~~Saa--------TLn~lRa 242 (365)
.-||-|||+|+..++. |++.|+.
T Consensus 167 ~eDPlRiLRa~Rfaa~lgf~i~~~T~~~i~~ 197 (466)
T TIGR02692 167 GDDPLRMLRAARFVSQLGFEVAPRVRAAMTE 197 (466)
T ss_pred hhChHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4689999999998764 5666665
No 22
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=26.52 E-value=96 Score=32.05 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=20.5
Q ss_pred CCChHHHHHHHHHHHH-----------HHHHHHhhhc
Q 017864 220 VPDPERLIRAYCQSAA-----------TLNLLRSFAT 245 (365)
Q Consensus 220 ~PDP~RLL~AY~~Saa-----------TLn~lRa~~~ 245 (365)
.-||-|||+++..++. |+++|+....
T Consensus 129 ~eDPlRiLRa~RFaarl~~lgf~i~~~T~~~i~~~~~ 165 (409)
T PRK10885 129 AEDPLRVLRVARFAARFAHLGFRIAPETLALMREMVA 165 (409)
T ss_pred hhCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhh
Confidence 5699999999988765 6777777554
No 23
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=25.62 E-value=37 Score=35.11 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=27.1
Q ss_pred ceeeccccCCCCchHHHHhhhccCceeeecC
Q 017864 334 MLWVGERTRQLDGAHVEFLRGIANPLGIKNG 364 (365)
Q Consensus 334 ~lWIGeRTRqlDGAHVeflrgI~NPIGvKvG 364 (365)
|.+||-||-+ .--|-++.+|+.=|||+|-|
T Consensus 159 w~aIGARt~e-sq~hrelaSgls~PVgfKng 188 (356)
T PRK12822 159 WGAIGARTTE-SQVHRQLASALPCPVGFKNG 188 (356)
T ss_pred hhhhccchhc-CHHHHHHHhCCCCceEecCC
Confidence 5699999977 67899999999999999976
No 24
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.14 E-value=87 Score=30.74 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCccc
Q 017864 159 VLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFE 194 (365)
Q Consensus 159 ~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E 194 (365)
.++++|..+. ..+.++++ +|=|. |||+++.
T Consensus 30 ~~~~~a~~~~-~~g~~~~r----~g~~k-pRts~~s 59 (250)
T PRK13397 30 HIRLAASSAK-KLGYNYFR----GGAYK-PRTSAAS 59 (250)
T ss_pred HHHHHHHHHH-HcCCCEEE----ecccC-CCCCCcc
Confidence 3566666644 45789999 88887 9999873
No 25
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=25.03 E-value=1.2e+02 Score=34.64 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=37.5
Q ss_pred CCChHHHHHHHHHHH----------HHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHH---HHHHHHHHH
Q 017864 220 VPDPERLIRAYCQSA----------ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHR---VDEALGFMA 286 (365)
Q Consensus 220 ~PDP~RLL~AY~~Sa----------aTLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~---i~~al~Fm~ 286 (365)
..||.|||+++..++ .|++.||.... . -+..|.+.....+.+.++... +..+|+.|.
T Consensus 363 ~~dP~riLr~f~~~a~~~~i~~i~~~t~~~i~~~~~-------~---i~~~~~~~~~~~~~f~~iL~~~~~~~~~l~~M~ 432 (895)
T PRK00275 363 KRTPFALLEIFVLMAQHPEIKGVRADTIRLLREHRH-------L---IDDAFRNDIRNTSLFIELFKCPIGIHRNLRRMN 432 (895)
T ss_pred hcCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHH-------h---cCchhccCHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 468999999998874 45566664221 0 111122222334455555543 556799999
Q ss_pred HhcCCC
Q 017864 287 AAGLTL 292 (365)
Q Consensus 287 a~G~~~ 292 (365)
.+|+-.
T Consensus 433 ~~GvL~ 438 (895)
T PRK00275 433 RYGILG 438 (895)
T ss_pred HcCCHH
Confidence 999754
No 26
>PF05598 DUF772: Transposase domain (DUF772); InterPro: IPR008490 This presumed domain is found at the N terminus of transposase insH and other related transposases.
Probab=24.78 E-value=1.4e+02 Score=22.77 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 017864 270 RYQELAHRVDEALGFMAAAGLTLD 293 (365)
Q Consensus 270 ~y~~~~~~i~~al~Fm~a~G~~~~ 293 (365)
..+++++++.+.+.|+..||++.+
T Consensus 24 S~r~l~~~l~~~~~~r~~~g~~~~ 47 (77)
T PF05598_consen 24 SDRELEERLRDNLSFRYFCGLSLE 47 (77)
T ss_pred hHHHHHhhHhhhhHHHHHHhcccC
Confidence 357899999999999999996444
No 27
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=24.49 E-value=68 Score=34.16 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=16.0
Q ss_pred cccCCCCCCCCcccccCCeeccCccCc
Q 017864 181 MAGQFAKPRSDPFEVKNGVKLPSYKGD 207 (365)
Q Consensus 181 iAGQfAKPRS~~~E~vdGv~LPsYRGD 207 (365)
+=|||.+-+ ++|..+|.||-+
T Consensus 281 vrGQY~~g~------~~g~~~~gY~~e 301 (482)
T TIGR00871 281 VRGQYGAGE------IGGVSVPGYLEE 301 (482)
T ss_pred EeccccCCC------CCCcCCCCccCC
Confidence 459997654 468899999975
No 28
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=24.28 E-value=43 Score=34.54 Aligned_cols=28 Identities=36% Similarity=0.649 Sum_probs=24.9
Q ss_pred eeccccCCCCchHHHHhhhccCceeeecC
Q 017864 336 WVGERTRQLDGAHVEFLRGIANPLGIKNG 364 (365)
Q Consensus 336 WIGeRTRqlDGAHVeflrgI~NPIGvKvG 364 (365)
+||-||-+ .--|-|+.+|+.-|||+|=|
T Consensus 160 aIGARt~e-sq~hre~ASgls~PVgfKN~ 187 (348)
T PRK12756 160 AIGARTTE-SQIHREMASALSCPVGFKNG 187 (348)
T ss_pred hhcccccc-CHHHHHHHhcCCCceEecCC
Confidence 69999877 56699999999999999965
No 29
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=23.72 E-value=1.2e+02 Score=26.53 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=46.2
Q ss_pred CccchhhccChhhHHHHHHHHHHHHHHHhhcCCCC----eEeeeccccCCCCCCCCcccccCCeeccCccCccc
Q 017864 140 DCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMP----IIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNI 209 (365)
Q Consensus 140 DCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~P----VVkVGRiAGQfAKPRS~~~E~vdGv~LPsYRGD~V 209 (365)
.-...|.+.+++...+-+.++..++..|....+-. ++.+|+.|||.-. -+-=.-+|-|+||.-
T Consensus 44 ~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V~-------HlH~HvIPr~~~d~~ 110 (138)
T COG0537 44 RHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVF-------HLHIHIIPRYKGDDN 110 (138)
T ss_pred cchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCcc-------eEEEEEcCCcCCCCC
Confidence 44577889999999999999999999887765533 6778999998532 122345788887643
No 30
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=22.83 E-value=54 Score=27.03 Aligned_cols=18 Identities=39% Similarity=0.728 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhcCCCCcC
Q 017864 97 AQLETVLKTLEDFPPLVF 114 (365)
Q Consensus 97 ~~L~~v~~~L~~lPPLV~ 114 (365)
.+|.++.+.|+.|||++.
T Consensus 59 SQLKRiQRdlrGLPP~~~ 76 (76)
T PF08203_consen 59 SQLKRIQRDLRGLPPLVS 76 (76)
T ss_dssp HHHHHHHHHHHHS-----
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 568999999999999973
No 31
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=22.73 E-value=1.5e+02 Score=30.67 Aligned_cols=59 Identities=25% Similarity=0.363 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHHH---------HHHHHHhhhc-CCcccccccccchhhhhccCchhhHHHHHHHHH-----HHHHHH
Q 017864 220 VPDPERLIRAYCQSAA---------TLNLLRSFAT-GGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRV-----DEALGF 284 (365)
Q Consensus 220 ~PDP~RLL~AY~~Saa---------TLn~lRa~~~-gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~i-----~~al~F 284 (365)
.-||-|||+++..++. |+++++.+.. |.+..+. ..+-+.++..-+ ..++..
T Consensus 140 ~EDPLRILRa~RFaarlg~F~i~~eT~~~~~~~~~~~~l~~l~--------------~ERI~~El~k~L~~~~p~~~l~~ 205 (364)
T PRK13297 140 AEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEADALV--------------PERVWKEVSRGLMAQAPSRMLDV 205 (364)
T ss_pred ccCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccccCC--------------HHHHHHHHHHHHcCCCHHHHHHH
Confidence 5699999999988774 6677776553 2222221 112234443322 247788
Q ss_pred HHHhcCCC
Q 017864 285 MAAAGLTL 292 (365)
Q Consensus 285 m~a~G~~~ 292 (365)
|..||+-.
T Consensus 206 L~~~g~L~ 213 (364)
T PRK13297 206 LARAGALA 213 (364)
T ss_pred HHHcCCHH
Confidence 99998743
No 32
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=21.86 E-value=2.2e+02 Score=29.33 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=28.9
Q ss_pred CCCCcCHHHHHHHHHHHHHH-hCCCeeEEecCCcc
Q 017864 109 FPPLVFAGEARSLEERLAEA-AMGNAFLLQGGDCA 142 (365)
Q Consensus 109 lPPLV~a~Ei~~Lr~~La~v-A~G~AFlLQGGDCA 142 (365)
+-||++....+++++.+.++ +.|.+-+|.||.+.
T Consensus 319 ~gpli~~~~~~~v~~~i~~a~~~G~a~v~~gg~~~ 353 (475)
T PRK13473 319 LGPLISAAHRDRVAGFVERAKALGHIRVVTGGEAP 353 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEECCCcC
Confidence 57899999999999999874 55668999999765
No 33
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=21.73 E-value=2.1e+02 Score=28.53 Aligned_cols=53 Identities=28% Similarity=0.434 Sum_probs=29.2
Q ss_pred eeEEecCCcc-chhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCC-CCCCcccccCCeeccCccCc
Q 017864 133 AFLLQGGDCA-ESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAK-PRSDPFEVKNGVKLPSYKGD 207 (365)
Q Consensus 133 AFlLQGGDCA-EsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAK-PRS~~~E~vdGv~LPsYRGD 207 (365)
-|+|-+|=|+ |+ .+++....+-|...+.. .+.+.|. -|-|-| |||+++ ||||-
T Consensus 2 ~~~viAGPCsvEs-----~e~~~~~A~~lk~~~~~----~~~~~~f----k~sf~KapRTsp~---------sFqG~ 56 (258)
T TIGR01362 2 KFFLIAGPCVIES-----EDHALRVAEKLKELTSK----LGVPFIF----KSSFDKANRSSIH---------SFRGP 56 (258)
T ss_pred CceEEecCCcccC-----HHHHHHHHHHHHHHHHh----cCCCeEE----ecccCCCCCCCCC---------CCCCC
Confidence 3677788886 33 22233322323222221 2344443 688999 999986 77773
No 34
>PRK03059 PII uridylyl-transferase; Provisional
Probab=21.67 E-value=1.4e+02 Score=33.78 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHHHH----------HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHH---HHHHHHHHH
Q 017864 220 VPDPERLIRAYCQSAA----------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHR---VDEALGFMA 286 (365)
Q Consensus 220 ~PDP~RLL~AY~~Saa----------TLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~---i~~al~Fm~ 286 (365)
.-||.|||+++..++. |++.||.... .=+..|-......+.+.++... ...+|+.|.
T Consensus 343 ~~dP~riLr~fr~aa~~~~~~~i~~~T~~~i~~~~~----------~i~~~~~~~er~~~ef~~iL~~~~~~~~~l~~m~ 412 (856)
T PRK03059 343 ERHPHAILEAFLLYQQTPGLKGLSARTLRALYNARD----------VMNAAFRRDPVNRALFMQILQQPRGITHALRLMN 412 (856)
T ss_pred hcCHHHHHHHHHHHHhcCCccCcCHHHHHHHHHHHH----------hcCcccccCHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 3799999999988764 5566654221 0011111222334445555443 346789999
Q ss_pred HhcCCC
Q 017864 287 AAGLTL 292 (365)
Q Consensus 287 a~G~~~ 292 (365)
.+|+-.
T Consensus 413 ~~GlL~ 418 (856)
T PRK03059 413 QTSVLG 418 (856)
T ss_pred HhCCHH
Confidence 999754
No 35
>COG1342 Predicted DNA-binding proteins [General function prediction only]
Probab=21.45 E-value=1e+02 Score=26.66 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=20.8
Q ss_pred cCHHHHHHHHHHHHHH-hCCCeeEEecCCc
Q 017864 113 VFAGEARSLEERLAEA-AMGNAFLLQGGDC 141 (365)
Q Consensus 113 V~a~Ei~~Lr~~La~v-A~G~AFlLQGGDC 141 (365)
+++..+.+-|...|++ -+|++.++||||-
T Consensus 65 Tfwr~l~sAR~KvA~aLveGkaI~i~Ggey 94 (99)
T COG1342 65 TFWRLLTSARKKVADALVEGKAIIIKGGEY 94 (99)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEecCCce
Confidence 3444556666666654 5899999999995
No 36
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=21.20 E-value=2.2e+02 Score=29.38 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=34.5
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHH-----HHHHHHHH
Q 017864 220 VPDPERLIRAYCQSAA--------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRV-----DEALGFMA 286 (365)
Q Consensus 220 ~PDP~RLL~AY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~i-----~~al~Fm~ 286 (365)
.-||-|||+|+..++. |+..|+.... .....+..+-+.++..-+ ..++..|.
T Consensus 153 ~eDplRiLRa~Rfaa~l~f~i~~~t~~~i~~~~~---------------~l~~vs~eRI~~El~kll~~~~~~~~l~~l~ 217 (394)
T PRK13299 153 QEDALRMMRAVRFASQLGFDLETETFEAMKTQAP---------------LLEKISVERIFVEFEKLLLGPFWRKGLKLLI 217 (394)
T ss_pred ccCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH---------------HHhcCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5799999999998873 6666665321 122223323344443322 35678888
Q ss_pred HhcCCC
Q 017864 287 AAGLTL 292 (365)
Q Consensus 287 a~G~~~ 292 (365)
.+|+-.
T Consensus 218 ~~gll~ 223 (394)
T PRK13299 218 ETGLYN 223 (394)
T ss_pred HCChHH
Confidence 888743
No 37
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=20.40 E-value=1e+02 Score=28.03 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCC------CCCCCCccceeecccccccccc
Q 017864 276 HRVDEALGFMAAAGLTL------DHPAMTSTEFWTSHECLLLPYE 314 (365)
Q Consensus 276 ~~i~~al~Fm~a~G~~~------~~~~~~~~~~~TSHEaLLL~YE 314 (365)
.+|.+||.+|....... ..+......+||.+|.-.|+=|
T Consensus 38 ~eI~~Al~WL~~L~~~~~~~~~~~~~~~~s~Riyt~~E~~~L~~e 82 (155)
T PF04361_consen 38 EEINKALDWLEGLAELQEEEPPAQFASPRSMRIYTPEEQEKLDTE 82 (155)
T ss_pred HHHHHHHHHHHHHHhccccccccccCCCCceEecCHHHHHHCCHH
Confidence 57899999998644222 1122356789999998877654
No 38
>PF06974 DUF1298: Protein of unknown function (DUF1298); InterPro: IPR009721 This entry represents the C terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=20.14 E-value=66 Score=28.32 Aligned_cols=39 Identities=31% Similarity=0.488 Sum_probs=29.4
Q ss_pred CeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 017864 198 GVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATL 237 (365)
Q Consensus 198 Gv~LPsYRGD~VNg~~f~~~aR~PDP~RLL~AY~~SaaTL 237 (365)
++++-||.|.+-=|...| .+-.|||++|.+....+-.-|
T Consensus 112 ~itv~SY~g~l~~gi~ad-~~~vpD~~~l~~~~~~~l~eL 150 (153)
T PF06974_consen 112 NITVFSYAGKLDFGIVAD-RDAVPDPQRLADCFEEALEEL 150 (153)
T ss_pred EEEEEEeCCEEEEEEEEc-cccCCCHHHHHHHHHHHHHHH
Confidence 689999999986553332 356899999999988764443
No 39
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=20.14 E-value=1.5e+02 Score=32.98 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHH--------HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHH---HHHHHHHHHHHhc
Q 017864 221 PDPERLIRAYCQSAA--------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAH---RVDEALGFMAAAG 289 (365)
Q Consensus 221 PDP~RLL~AY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~---~i~~al~Fm~a~G 289 (365)
-||.|||+++..|+. |++.|+.. . .+. ..|.. ...+.+.++.. .....|+.|..+|
T Consensus 289 eDPlRiLRafrfAa~~gf~I~~~Tl~~i~~~-~----~L~--~~~~e------r~~~ef~kiL~s~~~~~~~L~~M~~~G 355 (693)
T PRK00227 289 DDPALPLRVAAAAARTGLPVSESVWKRLEEC-P----ELP--EPWPA------SAAGDFFRLLSSPVNSRRVIKQMDRHG 355 (693)
T ss_pred cCHHHHHHHHHHHHhcCCCcCHHHHHHHHhh-h----hcc--hhhHH------HHHHHHHHHHcCCCChHHHHHHHHHcC
Confidence 599999999998876 77877753 1 122 22421 22234444442 2456788899888
Q ss_pred CC
Q 017864 290 LT 291 (365)
Q Consensus 290 ~~ 291 (365)
+=
T Consensus 356 vL 357 (693)
T PRK00227 356 LW 357 (693)
T ss_pred CH
Confidence 74
Done!