Query 017864
Match_columns 365
No_of_seqs 142 out of 456
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 06:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rzi_A Probable 3-deoxy-D-arab 100.0 5E-133 2E-137 996.8 21.3 280 79-364 26-308 (462)
2 3tqk_A Phospho-2-dehydro-3-deo 90.4 3 0.0001 41.2 12.5 78 117-215 32-111 (346)
3 1of8_A Phospho-2-dehydro-3-deo 75.8 36 0.0012 33.9 12.8 77 118-215 51-129 (370)
4 3p0t_A Uncharacterized protein 52.0 82 0.0028 25.6 8.8 96 131-238 40-135 (138)
5 1n8f_A DAHP synthetase; (beta/ 36.8 18 0.00062 35.6 2.8 77 118-215 36-114 (350)
6 1miw_A TRNA CCA-adding enzyme; 35.9 45 0.0015 32.6 5.5 60 222-293 154-223 (404)
7 3tml_A 2-dehydro-3-deoxyphosph 35.7 36 0.0012 32.5 4.6 54 132-207 16-71 (288)
8 3ohe_A Histidine triad (HIT) p 34.7 1.9E+02 0.0066 23.8 10.0 84 141-232 43-128 (137)
9 1vfg_A A-adding enzyme, poly A 34.6 43 0.0015 32.4 5.1 59 222-291 149-218 (390)
10 4e9i_A Glucose-6-phosphate 1-d 33.4 41 0.0014 35.0 4.8 59 120-207 295-354 (541)
11 2rf4_B DNA-directed RNA polyme 29.9 24 0.00081 28.7 1.9 23 96-118 61-83 (87)
12 3aql_A Poly(A) polymerase; tra 25.4 1.5E+02 0.0052 29.1 7.2 60 222-293 178-247 (415)
13 3i24_A HIT family hydrolase; s 22.7 89 0.003 26.5 4.4 61 141-209 43-103 (149)
14 3ksv_A Uncharacterized protein 20.5 3.7E+02 0.013 22.3 9.6 92 131-232 46-141 (149)
No 1
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=100.00 E-value=5.3e-133 Score=996.76 Aligned_cols=280 Identities=46% Similarity=0.787 Sum_probs=274.0
Q ss_pred CcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhccChhhHHHHHH
Q 017864 79 LEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFR 158 (365)
Q Consensus 79 p~sWr~~pa~QqP~ypD~~~L~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~k~~ 158 (365)
++||+++|++|||.|| +++|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++|++
T Consensus 26 ~~sWr~~pa~QqP~yp-~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~AFlLQGGDCAEsF~~~~~~~ir~k~~ 104 (462)
T 3rzi_A 26 LDAALAKPAAQQPTWP-ADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVR 104 (462)
T ss_dssp HHHHHTSCCTTCCCCC-HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCCHHHHHHHHH
T ss_pred ccchhhCCcccCCCCC-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHCCCEEEEeCccccCChhhcChHHHHHHHH
Confidence 4799999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017864 159 VLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLN 238 (365)
Q Consensus 159 ~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~vdGv~LPsYRGD~VNg~~f~~~aR~PDP~RLL~AY~~SaaTLn 238 (365)
+|+|||+||+|++++|||||||||||||||||+++| |++||||||||||+++||+++|+|||+|||+||+||++|||
T Consensus 105 ~llqMa~vLt~g~~~PVVkvGRiAGQfAKPRSs~~E---Gv~LPsYRGD~VNg~~f~~~aR~PDP~Rll~aY~~SaatlN 181 (462)
T 3rzi_A 105 ALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADID---ALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMN 181 (462)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECSCCCCCCCSCSBC---TTSSBCCCCTTTSCSSSSHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCeEEecccccccCCCCCCCcC---CCcccccCCccccCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccc
Q 017864 239 LLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT 318 (365)
Q Consensus 239 ~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~aLt 318 (365)
+||+|++|||||||++++||++|+++++.+++|++++++|++||+||++||++.+ .+.+++||||||||||+||+|||
T Consensus 182 llRa~~~gG~Adl~~~~~W~~~fv~~s~~~~~y~~la~~i~~al~Fm~a~G~~~~--~l~~~~~ytSHEaLlL~YE~alt 259 (462)
T 3rzi_A 182 LVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERAML 259 (462)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTCCCG--GGSCCCCEEEEECCCHHHHHHTE
T ss_pred HHHHhccCChhhhhccccchhhhcccChhhhHHHHHHHHHHHHHHHHHHcCCCcc--cccccceeechHhhccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999887 57899999999999999999999
Q ss_pred ccc---CCCCCcccCCCCceeeccccCCCCchHHHHhhhccCceeeecC
Q 017864 319 RRD---STSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKNG 364 (365)
Q Consensus 319 R~d---~~~g~~Y~~SaH~lWIGeRTRqlDGAHVeflrgI~NPIGvKvG 364 (365)
|.| +.+|.|||||||||||||||||||||||||||||+||||||||
T Consensus 260 R~d~~~~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvG 308 (462)
T 3rzi_A 260 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLG 308 (462)
T ss_dssp EECCC----CCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEEC
T ss_pred cccccCCCCCCccccccccceeccccCCCCccHHHHHhcCCCCeeEeEC
Confidence 999 8899999999999999999999999999999999999999998
No 2
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=90.41 E-value=3 Score=41.18 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCC--eeEEecCCccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCccc
Q 017864 117 EARSLEERLAEAAMGN--AFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFE 194 (365)
Q Consensus 117 Ei~~Lr~~La~vA~G~--AFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E 194 (365)
-|..=|+.+.++-.|+ .|++=.|=|+=- +++.+.+-.+-|..++.-+.. ...-|.| |-|-|||++
T Consensus 32 ~v~~~R~~i~~Il~G~d~rllVIaGPCSie----d~eq~leyA~~Lk~~~~~~~d-~l~~vmR-----~y~~KPRTs--- 98 (346)
T 3tqk_A 32 TVRKSRKEIANIIHGNDDRVAVVVGPCSIH----DPAAAIEYATKLKEQVKKFHK-DILIIMR-----VYFEKPRTT--- 98 (346)
T ss_dssp HHHHHHHHHHHHHHTSSCSEEEEEECSSCS----CHHHHHHHHHHHHHHHHHHTT-TEEEEEE-----CCCCCCCSS---
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEEecCccC----CHHHHHHHHHHHHHHHhhhcc-cceEEee-----ecccCCCCC---
Confidence 3555678899998886 599999999643 445555555555555544322 1122444 558899987
Q ss_pred ccCCeeccCccCcccCCCCCC
Q 017864 195 VKNGVKLPSYKGDNINGDAFD 215 (365)
Q Consensus 195 ~vdGv~LPsYRGD~VNg~~f~ 215 (365)
+.|.| ++|+|..+
T Consensus 99 -------~g~kG-L~nDP~ld 111 (346)
T 3tqk_A 99 -------IGWKG-FINDPDLD 111 (346)
T ss_dssp -------CSCCC-TTTCTTSS
T ss_pred -------cCccc-cccCCCCC
Confidence 34677 66775443
No 3
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=75.76 E-value=36 Score=33.87 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCC--CeeEEecCCccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccc
Q 017864 118 ARSLEERLAEAAMG--NAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEV 195 (365)
Q Consensus 118 i~~Lr~~La~vA~G--~AFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~ 195 (365)
|..=|+.++++-.| ..|++=.|=|.=- +++.+.+-.+-|..++.-+ +.++++|- =+-|-|||+++
T Consensus 51 v~~~r~~i~~Il~g~d~rllvIaGPCSIe----d~e~aleyA~~Lk~~~~~~--~d~l~iVm----R~yfeKPRTs~--- 117 (370)
T 1of8_A 51 AKRGRREAIDIITGKDDRVLVIVGPCSIH----DLEAAQEYALRLKKLSDEL--KGDLSIIM----RAYLEKPRTTV--- 117 (370)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEEECSCCC----CHHHHHHHHHHHHHHHHHH--TTTEEEEE----ECCCCCCCSSS---
T ss_pred HHHHHHHHHhhhcCCCCCeEEEEeCCcCC----CHHHHHHHHHHHHHHHHhh--ccCeEEEE----EeccccccCCc---
Confidence 34447888888888 4799999999532 3455555555555556554 34555543 56799999983
Q ss_pred cCCeeccCccCcccCCCCCC
Q 017864 196 KNGVKLPSYKGDNINGDAFD 215 (365)
Q Consensus 196 vdGv~LPsYRGD~VNg~~f~ 215 (365)
-|+| +||.|..+
T Consensus 118 -------GwKG-li~dP~ld 129 (370)
T 1of8_A 118 -------GWKG-LINDPDVN 129 (370)
T ss_dssp -------SCCC-TTTCTTSS
T ss_pred -------cccc-cccCCCcC
Confidence 3566 46775554
No 4
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=52.03 E-value=82 Score=25.58 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=61.8
Q ss_pred CCeeEEecCCccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccC
Q 017864 131 GNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNIN 210 (365)
Q Consensus 131 G~AFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~vdGv~LPsYRGD~VN 210 (365)
|...|+== .-.++|.|.+++.+.+-++++..++..|....+..-+.+ ++|||=- --+-=.-+|-|.||-+|
T Consensus 40 gH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~-~~~gq~v-------~HlH~HiiPr~~~d~~~ 110 (138)
T 3p0t_A 40 GHTLVVPR-EEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGL-IIAGLEV-------PHLHVHVFPTRSLSDFG 110 (138)
T ss_dssp TCEEEEES-SCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEE-EECCSSC-------SSCCEEEEEESCGGGSS
T ss_pred cEEEEEEh-HHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcE-EECCccc-------CEEEEEEeccccCCCCc
Confidence 44444443 236778999999999999999999988866555554555 3677621 11222448889987555
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017864 211 GDAFDEKSRVPDPERLIRAYCQSAATLN 238 (365)
Q Consensus 211 g~~f~~~aR~PDP~RLL~AY~~SaaTLn 238 (365)
|.......+|+-|-+.|..=+..|+
T Consensus 111 ---~~~~~~~~~~~~l~~~~~~l~~~l~ 135 (138)
T 3p0t_A 111 ---FANVDRNPSPESLDEAQAKIKAALA 135 (138)
T ss_dssp ---STTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ---ccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3333677888887777665544443
No 5
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=36.75 E-value=18 Score=35.64 Aligned_cols=77 Identities=23% Similarity=0.358 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCC--eeEEecCCccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccc
Q 017864 118 ARSLEERLAEAAMGN--AFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEV 195 (365)
Q Consensus 118 i~~Lr~~La~vA~G~--AFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~ 195 (365)
|..=|+.+.++-.|+ .|++=.|=|.=- +++.+.+-.+-|..++.-+ +.++++|- =+-|-|||+++
T Consensus 36 v~~~r~~i~~i~~G~d~rllvIaGPCsie----~~e~aleyA~~L~~~~~~l--~d~l~ivm----R~yfeKPRTs~--- 102 (350)
T 1n8f_A 36 VAHARKAIHKILKGNDDRLLVVIGPCSIH----DPVAAKEYATRLLALREEL--KDELEIVM----RVYFEKPRTTV--- 102 (350)
T ss_dssp HHHHHHHHHHHHTTSCCCEEEEEECSSCC----CHHHHHHHHHHHHHHHHHT--TTTEEEEE----ECCCCCCCSSS---
T ss_pred HHHHHHhHhceeeCCCCceEEEEeCCcCC----CHHHHHHHHHHHHHHHHhh--ccCeEEEE----EeccccCcCCc---
Confidence 444577888888775 599999999522 3444555555555555544 23455553 56799999982
Q ss_pred cCCeeccCccCcccCCCCCC
Q 017864 196 KNGVKLPSYKGDNINGDAFD 215 (365)
Q Consensus 196 vdGv~LPsYRGD~VNg~~f~ 215 (365)
-|+|- +|.|..+
T Consensus 103 -------g~kGl-~~dP~ld 114 (350)
T 1n8f_A 103 -------GWKGL-INDPHMD 114 (350)
T ss_dssp -------SCCCT-TTCTTSS
T ss_pred -------CcCCC-CCCCCcc
Confidence 28885 5664443
No 6
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=35.90 E-value=45 Score=32.64 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHH--------HHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHH--HHHHHHHHHHHhcCC
Q 017864 222 DPERLIRAYCQSA--------ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAH--RVDEALGFMAAAGLT 291 (365)
Q Consensus 222 DP~RLL~AY~~Sa--------aTLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~--~i~~al~Fm~a~G~~ 291 (365)
||-|||+|+..++ .|++.|+.... .+ ..+.......++..+.. ....+|+.|..+|+-
T Consensus 154 DPlRiLRa~Rfaa~lgf~i~~~T~~ai~~~~~-~l-----------~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll 221 (404)
T 1miw_A 154 DALRMMRAVRFVSELGFALAPDTEQAIVQNAP-LL-----------AHISVERMTMEMEKLLGGPFAARALPLLAETGLN 221 (404)
T ss_dssp CTHHHHHHHHHHHHHCCEECHHHHHHHHHHGG-GG-----------GGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTT
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-hh-----------ccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcch
Confidence 9999999999887 57787876431 11 11222222223333322 235678899999985
Q ss_pred CC
Q 017864 292 LD 293 (365)
Q Consensus 292 ~~ 293 (365)
..
T Consensus 222 ~~ 223 (404)
T 1miw_A 222 AY 223 (404)
T ss_dssp TS
T ss_pred hh
Confidence 43
No 7
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=35.65 E-value=36 Score=32.52 Aligned_cols=54 Identities=31% Similarity=0.450 Sum_probs=24.6
Q ss_pred CeeEEecCCcc-chhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCC-CCCCcccccCCeeccCccCc
Q 017864 132 NAFLLQGGDCA-ESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAK-PRSDPFEVKNGVKLPSYKGD 207 (365)
Q Consensus 132 ~AFlLQGGDCA-EsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAK-PRS~~~E~vdGv~LPsYRGD 207 (365)
+.|++=+|=|+ |+ .+++.+..+-|..++..+. .++| +-+-|-| ||++++ ||||-
T Consensus 16 ~~~~vIaGPCsie~-----~~~~~e~A~~lk~~~~~~~----~~~v----~k~~f~KapRTs~~---------sf~Gl 71 (288)
T 3tml_A 16 QPFFLIAGTCVVES-----EQMTIDTAGRLKEICEKLN----VPFI----YKSSYDKANRSSGK---------SFRGL 71 (288)
T ss_dssp SCCEEEEECSBCCC-----HHHHHHHHHHHHHHHHHHT----CCEE----EECBC-----------------------
T ss_pred CceEEEEeCCcCCC-----HHHHHHHHHHHHHHHHHcC----CCEE----EecccccCCCCCCC---------CcCCc
Confidence 45788888887 43 4555555555555554442 5555 3567888 999987 88886
No 8
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=34.73 E-value=1.9e+02 Score=23.83 Aligned_cols=84 Identities=10% Similarity=-0.008 Sum_probs=58.3
Q ss_pred ccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCC-CCCC-CCC
Q 017864 141 CAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNING-DAFD-EKS 218 (365)
Q Consensus 141 CAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~vdGv~LPsYRGD~VNg-~~f~-~~a 218 (365)
-.+++.|++++...+-+..+..++..|....+..-+.|| .|||-= --+-=.-+|-|.||.... +-+. ...
T Consensus 43 h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-~aGq~V-------~HlH~HviPR~~~D~~~p~~vw~~~~~ 114 (137)
T 3ohe_A 43 GIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-ALGNMV-------PQLHLHHIVRYQGDPAWPGPVWGKQPP 114 (137)
T ss_dssp TCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-ECCSSC-------CSCCEEEEEECTTSTTTTSCCTTSSCC
T ss_pred ccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-eccCcC-------CEEEEEEeCCCCCCCCCCcccccCCCC
Confidence 357788999999888889999999999887777789999 888841 122345689999997642 2222 234
Q ss_pred CCCChHHHHHHHHH
Q 017864 219 RVPDPERLIRAYCQ 232 (365)
Q Consensus 219 R~PDP~RLL~AY~~ 232 (365)
+..|++-|-+-+..
T Consensus 115 ~~~~~eel~~~~~~ 128 (137)
T 3ohe_A 115 VPYTEEQQASVKAK 128 (137)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 55677655444433
No 9
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=34.58 E-value=43 Score=32.38 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHH--------HHHHHHHhhhcCC-cccccccccchhhhhccCchhhHHHHHHH--HHHHHHHHHHHhcC
Q 017864 222 DPERLIRAYCQSA--------ATLNLLRSFATGG-YAAMQRVTQWNLDFAEHSEQGDRYQELAH--RVDEALGFMAAAGL 290 (365)
Q Consensus 222 DP~RLL~AY~~Sa--------aTLn~lRa~~~gG-~adl~~~~~W~l~f~~~s~~~~~y~~~~~--~i~~al~Fm~a~G~ 290 (365)
||-|||+++..++ .|++.|+.....+ +..+ .......++..+.. ....+|+.|..+|+
T Consensus 149 DPlRiLRa~Rfaa~~gf~i~~~T~~~i~~~~~~~~l~~~-----------s~eRi~~El~kiL~~~~~~~~l~~l~~~gl 217 (390)
T 1vfg_A 149 DPVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKEA-----------PRGRLINEIKLALREDRFLEILELYRKYRV 217 (390)
T ss_dssp CTTHHHHHHHHHHHHTCEECHHHHHHHHHHHHTTGGGTS-----------CHHHHHHHHHHHHHCSSHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhhcc-----------CHHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 9999999999887 4788887654322 2221 11112223333332 23567888999987
Q ss_pred C
Q 017864 291 T 291 (365)
Q Consensus 291 ~ 291 (365)
-
T Consensus 218 L 218 (390)
T 1vfg_A 218 L 218 (390)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=33.37 E-value=41 Score=35.03 Aligned_cols=59 Identities=29% Similarity=0.435 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCeeEEecCCccchhhccChhhHHH-HHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCC
Q 017864 120 SLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRD-TFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNG 198 (365)
Q Consensus 120 ~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~-k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~vdG 198 (365)
.|-+.|+-||+ |....++++.||+ |+|+|..|--+ . .--||+ |||.+= .+|
T Consensus 295 HLlQlL~LvAM------------EpP~s~~a~~iRdEKvKVLralrpi-~---~~~vVr-----GQY~~g-------~~g 346 (541)
T 4e9i_A 295 HLTQILSLLTM------------EKPRSLSAEDIRDEKVQVLRQVVPA-N---PAECVL-----GQYTAS-------ADG 346 (541)
T ss_dssp HHHHHHHHHHC------------CCCSSSSHHHHHHHHHHHHTTBCCC-C---TTSEEE-----EEEECC-------SSS
T ss_pred HHHHHHHHHhc------------CCCCCCCHHHHHHHHHHHHHccCCC-C---ccceEE-----ccccCC-------CCC
Confidence 67888999998 8889999999986 99999766431 1 112444 999762 256
Q ss_pred eeccCccCc
Q 017864 199 VKLPSYKGD 207 (365)
Q Consensus 199 v~LPsYRGD 207 (365)
.+|.||-+
T Consensus 347 -~v~gY~~e 354 (541)
T 4e9i_A 347 -STPGYLDD 354 (541)
T ss_dssp -SSCCGGGC
T ss_pred -CCCCccCC
Confidence 78888865
No 11
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=29.88 E-value=24 Score=28.73 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCCCcCHHHH
Q 017864 96 KAQLETVLKTLEDFPPLVFAGEA 118 (365)
Q Consensus 96 ~~~L~~v~~~L~~lPPLV~a~Ei 118 (365)
-.+|.+|.+.|+.|||++...|.
T Consensus 61 LsQLKRvQRdlrGLPP~~~e~~~ 83 (87)
T 2rf4_B 61 ISQLKRIQRDFKGLPPAQDFSAA 83 (87)
T ss_dssp HHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHhhcCCCcchhcccC
Confidence 46799999999999999987663
No 12
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=25.37 E-value=1.5e+02 Score=29.12 Aligned_cols=60 Identities=18% Similarity=0.097 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHH--------HHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHH--HHHHHHHHHHHhcCC
Q 017864 222 DPERLIRAYCQSA--------ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAH--RVDEALGFMAAAGLT 291 (365)
Q Consensus 222 DP~RLL~AY~~Sa--------aTLn~lRa~~~gG~adl~~~~~W~l~f~~~s~~~~~y~~~~~--~i~~al~Fm~a~G~~ 291 (365)
||-|||+++..++ .|++.|+... ..+ ..+......+++.++.. ....+|+.|..+|+-
T Consensus 178 DPlRiLRa~Rfaarlgf~i~~~T~~ai~~~~-~~l-----------~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL 245 (415)
T 3aql_A 178 DPVRMLRAVRFAAKLGMRISPETAEPIPRLA-TLL-----------NDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLF 245 (415)
T ss_dssp CTHHHHHHHHHHHHTTCEECHHHHTHHHHHG-GGG-----------GGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-Hhh-----------hcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCCh
Confidence 8999999999886 5777777532 111 11111112222333221 235678999999985
Q ss_pred CC
Q 017864 292 LD 293 (365)
Q Consensus 292 ~~ 293 (365)
..
T Consensus 246 ~~ 247 (415)
T 3aql_A 246 QP 247 (415)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 13
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=22.74 E-value=89 Score=26.51 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=46.2
Q ss_pred ccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCccc
Q 017864 141 CAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNI 209 (365)
Q Consensus 141 CAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~vdGv~LPsYRGD~V 209 (365)
-.+++.|++++...+-++.+..++..|....+..-+.|| +|||-- --+-=.-+|-|.||..
T Consensus 43 Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~-~aGq~V-------~HlH~HvIPR~~~D~~ 103 (149)
T 3i24_A 43 ELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIG-ALGNLV-------PQLHIHHIARFTTDVA 103 (149)
T ss_dssp TCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE-ECCSSC-------CSCCEEEEEECTTSTT
T ss_pred ccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEh-hhhCCC-------CEEEEEEeCCccCCCC
Confidence 467888999998888888898899888877677779999 688832 1122346888999864
No 14
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=20.55 E-value=3.7e+02 Score=22.31 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=56.8
Q ss_pred CCeeEEecCCccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEee----eccccCCCCCCCCcccccCCeeccCccC
Q 017864 131 GNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKV----GRMAGQFAKPRSDPFEVKNGVKLPSYKG 206 (365)
Q Consensus 131 G~AFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkV----GRiAGQfAKPRS~~~E~vdGv~LPsYRG 206 (365)
|...|+==- -.++|.|++++.+.+-++++..++..|....+..-++| |..|||- .--+-=.-+|-|+|
T Consensus 46 gH~LViPk~-H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~-------v~HlHiHiiPR~~~ 117 (149)
T 3ksv_A 46 GHMLVIPKE-HASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQE-------VPHVHFHIIPKTDE 117 (149)
T ss_dssp TCEEEEESS-CCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSTTTTCC-------SSSCCEEEEEECCT
T ss_pred CEEEEEeCh-hhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecCcccCCC-------CCEEEEEEEecccC
Confidence 444444332 35789999999999999999999998876655554555 5677762 11112245788888
Q ss_pred cccCCCCCCCCCCCCChHHHHHHHHH
Q 017864 207 DNINGDAFDEKSRVPDPERLIRAYCQ 232 (365)
Q Consensus 207 D~VNg~~f~~~aR~PDP~RLL~AY~~ 232 (365)
|- |..+.-.....+|+-|-+-+..
T Consensus 118 d~--g~~~~w~~~~~~~~~l~~~~~~ 141 (149)
T 3ksv_A 118 KT--GLKIGWDTVKVASDELAEDAKR 141 (149)
T ss_dssp TS--SCCCCCCCCCCCHHHHHHHHHH
T ss_pred CC--CcccCCCCCCCCHHHHHHHHHH
Confidence 62 3333333445677665544443
Done!