Query 017865
Match_columns 365
No_of_seqs 204 out of 549
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 06:10:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 96.1 0.016 5.4E-07 47.0 7.4 76 243-344 4-83 (86)
2 1vd2_A Protein kinase C, IOTA 96.1 0.014 4.6E-07 47.5 6.7 59 244-329 5-63 (89)
3 2kkc_A Sequestosome-1; P62, PB 94.6 0.043 1.5E-06 45.5 5.2 61 245-330 5-80 (102)
4 2ktr_A Sequestosome-1; autopha 93.7 0.1 3.6E-06 44.3 5.8 72 244-340 19-106 (117)
5 1q1o_A Cell division control p 91.7 0.54 1.9E-05 38.8 7.4 76 244-340 4-86 (98)
6 2bkf_A Zinc-finger protein NBR 78.1 4.5 0.00015 32.9 5.9 55 246-328 7-61 (87)
7 1oey_J P40-PHOX, neutrophil cy 76.5 3.8 0.00013 34.5 5.2 40 262-329 28-67 (107)
8 1pqs_A Cell division control p 75.3 3.8 0.00013 32.2 4.7 57 263-340 8-65 (77)
9 1wj6_A KIAA0049 protein, RSGI 74.5 4.4 0.00015 33.8 5.1 65 245-339 14-78 (101)
10 1oey_A P67-PHOX, neutrophil cy 71.4 12 0.00042 29.8 6.8 70 246-344 6-78 (83)
11 3o27_A Putative uncharacterize 53.5 4.1 0.00014 31.8 1.0 22 306-327 38-59 (68)
12 1e8p_A Endoglucanase, dockerin 49.2 4.8 0.00016 29.3 0.7 13 314-326 20-32 (46)
13 3brc_A Conserved protein of un 30.6 12 0.00043 33.1 0.5 16 68-83 95-110 (156)
14 3c8c_A Methyl-accepting chemot 24.3 26 0.00089 28.8 1.3 35 309-343 203-238 (240)
15 2j4m_A Endoglucanase 45A; dock 23.1 17 0.0006 30.2 -0.0 13 314-326 21-33 (100)
16 2npt_A Dual specificity mitoge 20.9 1.3E+02 0.0046 25.0 4.8 56 246-328 15-71 (106)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.14 E-value=0.016 Score=47.04 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=55.7
Q ss_pred CCcceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCC
Q 017865 243 SSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDG 322 (365)
Q Consensus 243 ~~~~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEG 322 (365)
.+.+-||..-|..--=-.+|-....+|++|..-|+++|.. ....|++.|.|.||
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L--------------------------~~~~f~i~Y~D~dG 57 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAHG 57 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTTS
T ss_pred CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC--------------------------CCCCEEEEEECCCC
Confidence 4567888888887333345555678999999999999973 12369999999999
Q ss_pred CeEEccCc-ChHHHhhhcc---eeEE
Q 017865 323 DWMLVGDV-PWEMFIGTCK---RLRI 344 (365)
Q Consensus 323 DwMLVGDV-PWemFv~svK---RLrI 344 (365)
|++-+-+. =..+=+.++| ||.|
T Consensus 58 DLlpInnDdnl~~Al~~a~plLRl~I 83 (86)
T 1wmh_B 58 DLLPLTNDDSLHRALASGPPPLRLLV 83 (86)
T ss_dssp CEEECCSHHHHHHHTTSSSSCEEEEE
T ss_pred CEeeecCHHHHHHHHHhCCCcEEEEE
Confidence 99987654 4555566777 4444
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.08 E-value=0.014 Score=47.45 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=45.6
Q ss_pred CcceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCC
Q 017865 244 SALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGD 323 (365)
Q Consensus 244 ~~~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGD 323 (365)
+.+=|||+-.|.-+ -+.+...-+|++|...|.++|.. ..+..+++.|.|.|||
T Consensus 5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~-------------------------~~~~~f~lky~DEeGD 57 (89)
T 1vd2_A 5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSF-------------------------DNEQLFTMKWIDEEGD 57 (89)
T ss_dssp SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTC-------------------------CSSCCEEEEECCSSSC
T ss_pred CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCC-------------------------CCCCeEEEEEECCCCC
Confidence 45789999999844 44444467999999999999974 1134799999999999
Q ss_pred eEEccC
Q 017865 324 WMLVGD 329 (365)
Q Consensus 324 wMLVGD 329 (365)
+.-+-.
T Consensus 58 ~itisS 63 (89)
T 1vd2_A 58 PCTVSS 63 (89)
T ss_dssp CEECCS
T ss_pred cccccC
Confidence 876543
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=94.63 E-value=0.043 Score=45.54 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=44.3
Q ss_pred cceEEEeecCC----cccceecCCC-----------CCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccC
Q 017865 245 ALFVKVSMDGA----PYLRKVDLKN-----------YSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLH 309 (365)
Q Consensus 245 ~~yVKV~MDG~----pIGRKVDL~~-----------y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~ 309 (365)
++-||++..|. .=-|++=|.. ..+|++|...+.++|.. +.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~-------------------------l~ 59 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA-------------------------LR 59 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------SC
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc-------------------------cC
Confidence 46788888752 2335544431 24899999999999963 22
Q ss_pred CCceEEEEEcCCCCeEEccCc
Q 017865 310 GSEFVLTYEDKDGDWMLVGDV 330 (365)
Q Consensus 310 gseyvLtYEDkEGDwMLVGDV 330 (365)
+..|+|.|.|.|||+.-+-+.
T Consensus 60 ~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 60 PGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp SSCEEEEEECTTCCEEEECSH
T ss_pred CCcEEEEEECCCCCEEEecCH
Confidence 457999999999999877664
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=93.68 E-value=0.1 Score=44.32 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=48.6
Q ss_pred CcceEEEeecCC----cccceecCC-----------CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhcccc
Q 017865 244 SALFVKVSMDGA----PYLRKVDLK-----------NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLL 308 (365)
Q Consensus 244 ~~~yVKV~MDG~----pIGRKVDL~-----------~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll 308 (365)
..+-||++..|. .==|++=|. .-.+|++|...+.++|.. |
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~-------------------------L 73 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA-------------------------L 73 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------S
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc-------------------------c
Confidence 468899998752 123554443 245999999999999963 2
Q ss_pred CCCceEEEEEcCCCCeEEccCc-ChHHHhhhcc
Q 017865 309 HGSEFVLTYEDKDGDWMLVGDV-PWEMFIGTCK 340 (365)
Q Consensus 309 ~gseyvLtYEDkEGDwMLVGDV-PWemFv~svK 340 (365)
.+..|+|.|.|.|||+.-+-.. =..+=+.+++
T Consensus 74 ~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 74 RPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp CSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred CCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence 2457999999999999877653 3333333433
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=91.74 E-value=0.54 Score=38.84 Aligned_cols=76 Identities=14% Similarity=0.351 Sum_probs=55.0
Q ss_pred CcceEEEeecCCc----c--cceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEE
Q 017865 244 SALFVKVSMDGAP----Y--LRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTY 317 (365)
Q Consensus 244 ~~~yVKV~MDG~p----I--GRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtY 317 (365)
+++-|||+-+... + .|.|=+..--+|++|...+.+-|..+.. + +. .....|-|
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-----------~--------~i--~~~~klkY 62 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-----------N--------NI--SPITKIKY 62 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-----------S--------CC--CCCCCEEE
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-----------c--------cc--cceeEEEE
Confidence 4578899887431 2 3666677888999999999999975210 0 00 12467999
Q ss_pred EcCCCCeEEccC-cChHHHhhhcc
Q 017865 318 EDKDGDWMLVGD-VPWEMFIGTCK 340 (365)
Q Consensus 318 EDkEGDwMLVGD-VPWemFv~svK 340 (365)
+|.|||+...++ .=|+|-++++|
T Consensus 63 kDEdGD~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 63 QDEDGDFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp ECSSSCEEEECSHHHHHHHHHHHH
T ss_pred EcCCCCEEEEcCHHHHHHHHHHHH
Confidence 999999988776 58999888874
No 6
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=78.12 E-value=4.5 Score=32.87 Aligned_cols=55 Identities=9% Similarity=0.201 Sum_probs=41.6
Q ss_pred ceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeE
Q 017865 246 LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM 325 (365)
Q Consensus 246 ~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwM 325 (365)
.-+||.--|...=--|.-..--++++|-..+..+|+. +.++|+|.|.|||-.
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L----------------------------~~~~ikY~DEenD~v 58 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEEV 58 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------------------SSEEEEEECTTSCEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC----------------------------CceEEEEEcCCCCEE
Confidence 4578899998443346444477899999999999963 258999999999987
Q ss_pred Ecc
Q 017865 326 LVG 328 (365)
Q Consensus 326 LVG 328 (365)
-|=
T Consensus 59 ~i~ 61 (87)
T 2bkf_A 59 SIN 61 (87)
T ss_dssp EEC
T ss_pred EEe
Confidence 663
No 7
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=76.47 E-value=3.8 Score=34.47 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=32.7
Q ss_pred cCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEEccC
Q 017865 262 DLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGD 329 (365)
Q Consensus 262 DL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwMLVGD 329 (365)
||..--.|.+|..-..+-|.. .+-+|-|.|.||||.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~----------------------------~DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR----------------------------EDIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC----------------------------SSEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhcc----------------------------cceeeeeecCCCCEEEEcc
Confidence 677788999999999999963 1467999999999975544
No 8
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=75.25 E-value=3.8 Score=32.21 Aligned_cols=57 Identities=18% Similarity=0.387 Sum_probs=41.1
Q ss_pred CCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEEccC-cChHHHhhhcc
Q 017865 263 LKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGD-VPWEMFIGTCK 340 (365)
Q Consensus 263 L~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwMLVGD-VPWemFv~svK 340 (365)
...--+|++|...+.+-|..+. +.+. .....|-|+|.|||+...++ .=|+|=+.++|
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~~-----~~~~----------------~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNTH-----NNNI----------------SPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTTT-----SSCS----------------CSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHcccc-----cccc----------------cceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 3445689999999999997420 0000 12567999999999987665 68999988874
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=74.46 E-value=4.4 Score=33.75 Aligned_cols=65 Identities=8% Similarity=0.147 Sum_probs=47.3
Q ss_pred cceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCe
Q 017865 245 ALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDW 324 (365)
Q Consensus 245 ~~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDw 324 (365)
..-+||.--|...=--|.-..--++++|-..+..+|.. +.++|.|.|.|||-
T Consensus 14 ~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L----------------------------~~~~IkY~DEenD~ 65 (101)
T 1wj6_A 14 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEE 65 (101)
T ss_dssp CEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCC----------------------------SSBCCEEECTTSCE
T ss_pred cEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCC----------------------------CceEEEEecCCCCE
Confidence 35688999998544447445577899999999999963 25789999999998
Q ss_pred EEccCcChHHHhhhc
Q 017865 325 MLVGDVPWEMFIGTC 339 (365)
Q Consensus 325 MLVGDVPWemFv~sv 339 (365)
.-|=- +..|-+.+
T Consensus 66 V~i~S--q~E~eEAl 78 (101)
T 1wj6_A 66 VSINS--QGEYEEAL 78 (101)
T ss_dssp ECCCS--HHHHHHHH
T ss_pred EEEec--HHHHHHHH
Confidence 87743 55554433
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=71.36 E-value=12 Score=29.82 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=53.8
Q ss_pred ceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEc-CCCCe
Q 017865 246 LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYED-KDGDW 324 (365)
Q Consensus 246 ~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYED-kEGDw 324 (365)
+=|||+-. +.-.|....=-+|.+|...|.+-+..- +.+-+|-|.| .+|.|
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~--------------------------~~~~~LsYk~~~s~~~ 56 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR--------------------------LEHTKLSYRPRDSNEL 56 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC--------------------------GGGCCEEECCTTCSSC
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC--------------------------cceeEEEeeCCCCCCe
Confidence 45777776 677788888889999999999888630 1134589999 68899
Q ss_pred EEccCcChHHHhhhcc--eeEE
Q 017865 325 MLVGDVPWEMFIGTCK--RLRI 344 (365)
Q Consensus 325 MLVGDVPWemFv~svK--RLrI 344 (365)
++.+|.=|+.-...++ ||++
T Consensus 57 vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 57 VPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EECCTTTHHHHHTTCBTTEEEE
T ss_pred eccChHHHHHHHHhccCCcEEE
Confidence 9999999998877755 5554
No 11
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=53.53 E-value=4.1 Score=31.82 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=18.4
Q ss_pred cccCCCceEEEEEcCCCCeEEc
Q 017865 306 DLLHGSEFVLTYEDKDGDWMLV 327 (365)
Q Consensus 306 dll~gseyvLtYEDkEGDwMLV 327 (365)
++-.|.++.++++|++|+.+|+
T Consensus 38 gIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 38 DIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCTTCCEEEEEEEETTEEEEE
T ss_pred CCCCCCEEEEEEecCCCeEEEE
Confidence 4445679999999999999887
No 12
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=49.20 E-value=4.8 Score=29.33 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.2
Q ss_pred EEEEEcCCCCeEE
Q 017865 314 VLTYEDKDGDWML 326 (365)
Q Consensus 314 vLtYEDkEGDwML 326 (365)
.++|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4899999999954
No 13
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=30.57 E-value=12 Score=33.13 Aligned_cols=16 Identities=50% Similarity=0.729 Sum_probs=11.8
Q ss_pred CccccccccCCCCCCC
Q 017865 68 NLKATELRLGLPGSQS 83 (365)
Q Consensus 68 nlk~TELRLGLPGs~s 83 (365)
||=-.-=|||.|||.|
T Consensus 95 DlvIARGRLGvPGSGS 110 (156)
T 3brc_A 95 DLVIARGRLGVPGSGS 110 (156)
T ss_dssp SEEEEEEECSSTTSCE
T ss_pred cEEEEcccccCCCCcc
Confidence 4444556999999986
No 14
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=24.26 E-value=26 Score=28.78 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=28.1
Q ss_pred CCCceEEEEEcC-CCCeEEccCcChHHHhhhcceeE
Q 017865 309 HGSEFVLTYEDK-DGDWMLVGDVPWEMFIGTCKRLR 343 (365)
Q Consensus 309 ~gseyvLtYEDk-EGDwMLVGDVPWemFv~svKRLr 343 (365)
+|.+|.+.|.-- ..+|.+|.-+|...+...+++++
T Consensus 203 ~g~~~~~~~~~~~~~~W~vv~~~p~~~~~~~~~~~~ 238 (240)
T 3c8c_A 203 NGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELR 238 (240)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEECHHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCCCCeEEEEEeCHHHHHHHHHHHh
Confidence 466788888754 45999999999999998887764
No 15
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=23.07 E-value=17 Score=30.18 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.1
Q ss_pred EEEEEcCCCCeEE
Q 017865 314 VLTYEDKDGDWML 326 (365)
Q Consensus 314 vLtYEDkEGDwML 326 (365)
.|+|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 5889999999954
No 16
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=20.86 E-value=1.3e+02 Score=24.97 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=38.5
Q ss_pred ceEEEeec-CCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCe
Q 017865 246 LFVKVSMD-GAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDW 324 (365)
Q Consensus 246 ~yVKV~MD-G~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDw 324 (365)
+-+.+... |..+--.||-..+=+|.+|..++.+....-| --.+-|||.|||+
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT---------------------------~TAFeYEDE~gDR 67 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEAT---------------------------TTAFEYEDEDGDR 67 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSC---------------------------CSEEEEECTTSCE
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccce---------------------------eeeeeeccccCCe
Confidence 44555554 5557777887777889999998887764311 2247799999999
Q ss_pred EEcc
Q 017865 325 MLVG 328 (365)
Q Consensus 325 MLVG 328 (365)
.-|-
T Consensus 68 ITVR 71 (106)
T 2npt_A 68 ITVR 71 (106)
T ss_dssp EEEC
T ss_pred eEEc
Confidence 8874
Done!