BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017869
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KP9|A Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide
Reductase
Length = 291
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 117/269 (43%), Gaps = 41/269 (15%)
Query: 69 IGGVGFLETTYLSYLKLTNSDA-FCPIGGASCGDVLNSDYAVVFGVP------LPFIGMF 121
+ G+G L T YL+Y KLT A FC G S VL+S +A G+P L F+G+
Sbjct: 26 LAGLGSLLTAYLTYTKLTEQPAAFCTGDGGS-DLVLSSRWAEFLGIPTAAVGLLGFLGVL 84
Query: 122 AYXXXXXXXXXXXRKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYC 181
A R +P L G ++M A Y LY++ C YC
Sbjct: 85 ALAVLPDGLPLVKRWRWPA----------LFGLVSAMTAFEMYMLYLMVAVLR-QFCMYC 133
Query: 182 XXXXXXXXXXXXXXXXXXXVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANL 241
+ K+ + +A L + Y++ P
Sbjct: 134 TTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLTLVTTIGVYANQVP---------- 183
Query: 242 PFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFP 301
SP A+ LA HL IG MYGA+WC HC +QK++FG+ A Q+ YVEC P
Sbjct: 184 ---------PPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGA-AFDQVPYVECSP 233
Query: 302 DGYRKGTKIAKACSDAKIEGFPTWVINGQ 330
+G GT A+ C++A I +PTW+ING+
Sbjct: 234 NG--PGTPQAQECTEAGITSYPTWIINGR 260
>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From
Synechococcus Sp
Length = 106
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAK 312
SP A+ LA HL IG MYGA+WC HC +QK++FG+ A Q+ YVEC P+G GT A+
Sbjct: 1 SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGA-AFDQVPYVECSPNG--PGTPQAQ 57
Query: 313 ACSDAKIEGFPTWVINGQ 330
C++A I +PTW+ING+
Sbjct: 58 ECTEAGITSYPTWIINGR 75
>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella
Fastidiosa Temecula1
Length = 133
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 240 NLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA-----VKQL 294
NLP+ E + AL+ K H ++GA WC+ C + ++ K
Sbjct: 5 NLPYDEHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHF 64
Query: 295 NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327
V+ + + ++++A D +G P V+
Sbjct: 65 EVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVV 97
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY-VECFPDGYRKGTKIAKA 313
F LS +H+ + G E ++FG + V Q V PDG R G K +
Sbjct: 332 FLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRD 391
Query: 314 CSDAKIEG 321
DA IEG
Sbjct: 392 AIDAAIEG 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,122,279
Number of Sequences: 62578
Number of extensions: 276054
Number of successful extensions: 516
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 5
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)