Query 017869
Match_columns 365
No_of_seqs 243 out of 662
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00756 VKc Family of likel 100.0 9.3E-28 2E-32 210.7 14.5 130 63-198 5-141 (142)
2 PRK14889 VKOR family protein; 99.9 5.9E-25 1.3E-29 193.5 14.1 127 65-198 11-140 (143)
3 PF07884 VKOR: Vitamin K epoxi 99.9 1.5E-24 3.3E-29 188.4 12.5 129 64-198 3-137 (137)
4 COG4243 Predicted membrane pro 99.9 4.2E-22 9.1E-27 176.0 13.0 136 60-201 8-150 (156)
5 KOG0190 Protein disulfide isom 99.2 1E-11 2.2E-16 128.1 4.6 71 268-348 47-131 (493)
6 cd03003 PDI_a_ERdj5_N PDIa fam 99.2 5.6E-11 1.2E-15 96.7 7.5 71 267-345 21-101 (101)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.1 1.7E-10 3.7E-15 97.8 6.9 70 266-343 31-111 (113)
8 cd02996 PDI_a_ERp44 PDIa famil 99.1 3.3E-10 7.1E-15 93.4 8.0 69 268-344 22-107 (108)
9 PF00085 Thioredoxin: Thioredo 99.1 6E-10 1.3E-14 89.1 7.8 74 265-346 18-101 (103)
10 cd03007 PDI_a_ERp29_N PDIa fam 99.0 3.6E-10 7.7E-15 96.6 6.6 76 266-346 21-113 (116)
11 TIGR00411 redox_disulf_1 small 99.0 5.5E-10 1.2E-14 86.7 7.2 72 267-344 2-77 (82)
12 cd02999 PDI_a_ERp44_like PDIa 99.0 9.2E-10 2E-14 90.6 7.7 72 268-344 22-99 (100)
13 cd03004 PDI_a_ERdj5_C PDIa fam 99.0 1.1E-09 2.3E-14 89.3 7.9 70 267-344 22-103 (104)
14 cd03002 PDI_a_MPD1_like PDI fa 99.0 1.5E-09 3.2E-14 88.7 7.3 72 267-344 21-107 (109)
15 cd02994 PDI_a_TMX PDIa family, 98.9 2.9E-09 6.3E-14 86.3 7.7 71 267-345 19-99 (101)
16 cd03005 PDI_a_ERp46 PDIa famil 98.9 3E-09 6.4E-14 85.6 6.5 70 267-344 19-101 (102)
17 PTZ00443 Thioredoxin domain-co 98.9 2.2E-08 4.8E-13 94.5 11.7 74 268-349 56-139 (224)
18 TIGR02196 GlrX_YruB Glutaredox 98.9 6.9E-09 1.5E-13 77.9 6.5 70 268-343 2-71 (74)
19 cd03001 PDI_a_P5 PDIa family, 98.8 1.8E-08 4E-13 81.1 8.5 70 267-344 21-101 (103)
20 cd02993 PDI_a_APS_reductase PD 98.8 1.8E-08 4E-13 83.5 8.4 73 265-344 22-108 (109)
21 cd02956 ybbN ybbN protein fami 98.8 2.3E-08 5E-13 80.1 8.1 69 268-344 16-94 (96)
22 PHA02125 thioredoxin-like prot 98.8 2E-08 4.3E-13 78.4 7.4 65 268-342 2-70 (75)
23 KOG4277 Uncharacterized conser 98.8 3.4E-09 7.3E-14 103.2 3.6 71 268-347 48-130 (468)
24 cd03000 PDI_a_TMX3 PDIa family 98.8 1.4E-08 3.1E-13 83.1 6.5 72 267-346 18-101 (104)
25 cd02963 TRX_DnaJ TRX domain, D 98.8 2.4E-08 5.1E-13 83.5 7.7 73 266-346 26-109 (111)
26 cd02995 PDI_a_PDI_a'_C PDIa fa 98.7 2.7E-08 5.8E-13 80.0 7.0 69 267-344 21-103 (104)
27 cd02998 PDI_a_ERp38 PDIa famil 98.7 3.2E-08 7E-13 79.5 7.3 72 266-344 20-104 (105)
28 PTZ00102 disulphide isomerase; 98.7 7.2E-08 1.6E-12 98.3 11.0 71 266-344 51-133 (477)
29 cd02997 PDI_a_PDIR PDIa family 98.7 5.7E-08 1.2E-12 78.2 8.2 72 266-343 19-102 (104)
30 cd02992 PDI_a_QSOX PDIa family 98.7 3.5E-08 7.7E-13 83.1 7.2 55 267-327 22-84 (114)
31 cd02973 TRX_GRX_like Thioredox 98.7 2.9E-08 6.2E-13 74.9 5.7 59 267-331 2-62 (67)
32 PHA02278 thioredoxin-like prot 98.7 6.1E-08 1.3E-12 80.9 7.6 74 267-344 17-100 (103)
33 TIGR01126 pdi_dom protein disu 98.6 9.4E-08 2E-12 76.4 6.7 71 267-345 16-98 (102)
34 PRK09381 trxA thioredoxin; Pro 98.6 2.1E-07 4.5E-12 76.5 8.3 72 267-346 24-105 (109)
35 cd02985 TRX_CDSP32 TRX family, 98.6 2.2E-07 4.7E-12 76.5 8.4 73 266-342 17-96 (103)
36 TIGR02180 GRX_euk Glutaredoxin 98.6 8.3E-08 1.8E-12 74.7 5.6 80 268-350 1-81 (84)
37 PRK00293 dipZ thiol:disulfide 98.6 5.4E-06 1.2E-10 88.0 20.9 75 265-343 475-564 (571)
38 TIGR00424 APS_reduc 5'-adenyly 98.6 1.5E-07 3.2E-12 97.5 8.7 74 267-346 374-460 (463)
39 KOG0190 Protein disulfide isom 98.6 1.1E-07 2.5E-12 98.4 7.0 84 258-349 378-473 (493)
40 cd02947 TRX_family TRX family; 98.6 3.4E-07 7.5E-12 70.2 8.1 71 265-343 11-90 (93)
41 PRK10996 thioredoxin 2; Provis 98.5 4.7E-07 1E-11 78.9 9.6 72 266-343 54-133 (139)
42 cd02948 TRX_NDPK TRX domain, T 98.5 3.3E-07 7.2E-12 75.2 8.2 66 267-342 20-96 (102)
43 PLN02309 5'-adenylylsulfate re 98.5 2.5E-07 5.3E-12 95.7 9.1 77 264-347 365-455 (457)
44 cd02949 TRX_NTR TRX domain, no 98.5 4.1E-07 8.8E-12 73.7 8.4 72 266-343 15-94 (97)
45 cd03065 PDI_b_Calsequestrin_N 98.5 2E-07 4.4E-12 80.0 6.4 73 266-346 29-116 (120)
46 TIGR01130 ER_PDI_fam protein d 98.5 2.2E-07 4.9E-12 93.4 7.7 70 268-345 22-105 (462)
47 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 3.1E-07 6.7E-12 74.6 7.0 75 262-342 9-87 (89)
48 cd02961 PDI_a_family Protein D 98.5 3.5E-07 7.6E-12 71.8 7.1 71 266-344 17-100 (101)
49 PTZ00051 thioredoxin; Provisio 98.5 7.2E-07 1.6E-11 71.5 8.6 70 265-341 19-95 (98)
50 cd02953 DsbDgamma DsbD gamma f 98.5 4.3E-07 9.3E-12 74.1 7.3 75 265-343 12-101 (104)
51 PF13098 Thioredoxin_2: Thiore 98.5 1.4E-07 3E-12 77.5 4.3 81 263-343 4-110 (112)
52 cd02975 PfPDO_like_N Pyrococcu 98.5 3.5E-07 7.5E-12 77.0 6.5 70 269-344 27-105 (113)
53 cd02951 SoxW SoxW family; SoxW 98.5 7E-07 1.5E-11 75.4 8.3 88 256-343 5-113 (125)
54 cd02954 DIM1 Dim1 family; Dim1 98.5 3.2E-07 6.8E-12 78.3 6.2 71 267-343 17-95 (114)
55 TIGR00412 redox_disulf_2 small 98.5 4.3E-07 9.4E-12 71.2 6.5 66 268-343 3-73 (76)
56 cd02984 TRX_PICOT TRX domain, 98.5 6.2E-07 1.4E-11 71.6 7.4 68 268-342 18-93 (97)
57 TIGR02187 GlrX_arch Glutaredox 98.4 5E-07 1.1E-11 84.0 7.6 80 258-343 127-210 (215)
58 cd02950 TxlA TRX-like protein 98.4 7.1E-07 1.5E-11 78.2 8.0 75 264-344 20-105 (142)
59 TIGR01068 thioredoxin thioredo 98.4 1.1E-06 2.3E-11 69.8 7.1 70 267-344 17-96 (101)
60 TIGR02187 GlrX_arch Glutaredox 98.3 1E-06 2.2E-11 81.9 7.2 75 263-343 18-105 (215)
61 KOG1731 FAD-dependent sulfhydr 98.3 5E-07 1.1E-11 94.3 5.2 62 268-336 62-140 (606)
62 PHA03050 glutaredoxin; Provisi 98.3 1.1E-06 2.4E-11 74.0 6.4 90 259-351 6-97 (108)
63 TIGR01295 PedC_BrcD bacterioci 98.3 1.6E-06 3.5E-11 74.3 7.4 81 264-344 23-119 (122)
64 cd02957 Phd_like Phosducin (Ph 98.3 7.9E-07 1.7E-11 74.3 5.3 64 268-338 28-98 (113)
65 cd02962 TMX2 TMX2 family; comp 98.3 4.6E-06 1E-10 74.4 10.4 59 268-334 51-126 (152)
66 KOG0191 Thioredoxin/protein di 98.3 9.1E-07 2E-11 89.0 6.6 86 258-351 41-136 (383)
67 PTZ00102 disulphide isomerase; 98.3 1.2E-06 2.7E-11 89.3 7.4 73 267-347 378-463 (477)
68 TIGR02190 GlrX-dom Glutaredoxi 98.3 1.3E-06 2.8E-11 68.8 5.5 67 266-340 8-76 (79)
69 cd02976 NrdH NrdH-redoxin (Nrd 98.3 2.5E-06 5.4E-11 63.8 6.8 68 268-341 2-69 (73)
70 TIGR02189 GlrX-like_plant Glut 98.3 1.4E-06 3.1E-11 72.0 5.9 86 262-351 4-89 (99)
71 cd02989 Phd_like_TxnDC9 Phosdu 98.3 2.9E-06 6.3E-11 71.4 7.8 57 268-330 26-86 (113)
72 cd02965 HyaE HyaE family; HyaE 98.3 2E-06 4.3E-11 73.1 6.3 68 268-343 31-110 (111)
73 PRK11200 grxA glutaredoxin 1; 98.2 1.9E-06 4.1E-11 68.5 5.3 74 267-342 2-79 (85)
74 cd03419 GRX_GRXh_1_2_like Glut 98.2 2.6E-06 5.6E-11 66.2 5.7 73 268-342 2-74 (82)
75 TIGR02181 GRX_bact Glutaredoxi 98.2 2.2E-06 4.8E-11 66.8 5.2 76 268-350 1-76 (79)
76 TIGR02194 GlrX_NrdH Glutaredox 98.2 3.5E-06 7.7E-11 65.0 5.8 71 268-344 1-71 (72)
77 TIGR02200 GlrX_actino Glutared 98.2 5.2E-06 1.1E-10 63.3 6.2 69 268-341 2-71 (77)
78 TIGR02183 GRXA Glutaredoxin, G 98.1 4E-06 8.7E-11 67.3 5.2 72 268-341 2-77 (86)
79 KOG0191 Thioredoxin/protein di 98.1 2.6E-06 5.7E-11 85.7 4.7 76 268-351 166-254 (383)
80 cd02066 GRX_family Glutaredoxi 98.1 5.7E-06 1.2E-10 61.4 5.4 69 268-341 2-70 (72)
81 KOG0912 Thiol-disulfide isomer 98.1 3.2E-06 6.9E-11 82.8 4.8 73 268-349 18-106 (375)
82 cd03027 GRX_DEP Glutaredoxin ( 98.1 4.9E-06 1.1E-10 64.2 5.0 68 268-342 3-72 (73)
83 cd03418 GRX_GRXb_1_3_like Glut 98.1 7.7E-06 1.7E-10 62.7 6.0 69 268-341 2-71 (75)
84 COG0695 GrxC Glutaredoxin and 98.1 9.5E-06 2.1E-10 64.7 6.3 73 267-343 2-75 (80)
85 PF00462 Glutaredoxin: Glutare 98.1 5.3E-06 1.1E-10 61.6 4.6 57 268-331 1-59 (60)
86 TIGR00365 monothiol glutaredox 98.0 1E-05 2.3E-10 66.6 6.2 80 258-342 4-88 (97)
87 PRK10638 glutaredoxin 3; Provi 98.0 1E-05 2.2E-10 64.1 5.5 75 267-350 3-79 (83)
88 cd03029 GRX_hybridPRX5 Glutare 98.0 1.3E-05 2.8E-10 61.6 5.5 66 267-340 2-69 (72)
89 KOG0910 Thioredoxin-like prote 98.0 1.3E-05 2.7E-10 71.5 6.2 74 268-347 65-146 (150)
90 PRK10329 glutaredoxin-like pro 98.0 2.1E-05 4.6E-10 62.8 6.8 71 267-344 2-72 (81)
91 cd02959 ERp19 Endoplasmic reti 98.0 2.1E-05 4.6E-10 66.7 6.8 73 254-331 9-89 (117)
92 COG3118 Thioredoxin domain-con 97.9 1.9E-05 4.2E-10 77.2 7.0 83 254-344 32-125 (304)
93 KOG0907 Thioredoxin [Posttrans 97.9 2.4E-05 5.2E-10 65.8 6.5 65 259-331 16-86 (106)
94 cd03023 DsbA_Com1_like DsbA fa 97.9 4.1E-05 9E-10 65.2 6.8 33 311-343 119-151 (154)
95 TIGR01130 ER_PDI_fam protein d 97.8 2.5E-05 5.4E-10 78.6 6.0 72 267-348 367-453 (462)
96 PRK10877 protein disulfide iso 97.8 4.9E-05 1.1E-09 72.0 6.9 82 264-345 107-227 (232)
97 cd03028 GRX_PICOT_like Glutare 97.7 4.7E-05 1E-09 61.5 5.1 74 262-342 4-84 (90)
98 PF13192 Thioredoxin_3: Thiore 97.7 4.7E-05 1E-09 59.6 4.9 70 267-344 2-74 (76)
99 cd02952 TRP14_like Human TRX-r 97.7 0.0001 2.2E-09 63.3 7.2 69 268-336 25-107 (119)
100 cd02955 SSP411 TRX domain, SSP 97.7 0.0001 2.3E-09 63.6 7.3 78 254-331 5-93 (124)
101 PLN00410 U5 snRNP protein, DIM 97.7 0.00012 2.6E-09 64.9 7.2 70 268-343 27-114 (142)
102 cd03020 DsbA_DsbC_DsbG DsbA fa 97.6 6.6E-05 1.4E-09 68.6 4.8 86 257-343 70-195 (197)
103 cd03010 TlpA_like_DsbE TlpA-li 97.6 0.00021 4.5E-09 60.1 7.1 75 267-341 28-126 (127)
104 cd02982 PDI_b'_family Protein 97.6 0.00019 4.1E-09 57.8 6.2 72 268-345 16-99 (103)
105 cd02986 DLP Dim1 family, Dim1- 97.5 0.00019 4.2E-09 61.3 6.3 58 268-331 18-80 (114)
106 PRK15412 thiol:disulfide inter 97.5 0.0012 2.5E-08 60.0 11.8 77 267-343 71-170 (185)
107 cd03011 TlpA_like_ScsD_MtbDsbE 97.5 0.00026 5.7E-09 58.8 6.7 85 257-342 13-119 (123)
108 PRK03147 thiol-disulfide oxido 97.5 0.00039 8.5E-09 61.2 8.0 87 257-343 54-166 (173)
109 cd01659 TRX_superfamily Thiore 97.5 0.00022 4.7E-09 49.4 5.1 58 269-329 2-61 (69)
110 cd02987 Phd_like_Phd Phosducin 97.5 0.00018 3.8E-09 65.5 5.5 57 268-331 87-147 (175)
111 TIGR00385 dsbE periplasmic pro 97.4 0.0004 8.6E-09 62.3 6.8 78 265-342 64-164 (173)
112 PF13462 Thioredoxin_4: Thiore 97.4 0.00013 2.8E-09 63.2 3.2 36 310-345 125-160 (162)
113 PRK12759 bifunctional gluaredo 97.4 0.00027 5.9E-09 72.3 5.9 69 267-340 3-79 (410)
114 TIGR02738 TrbB type-F conjugat 97.3 0.0016 3.4E-08 58.2 9.0 80 264-343 50-147 (153)
115 PF13899 Thioredoxin_7: Thiore 97.2 0.00043 9.3E-09 54.5 4.6 67 254-327 7-79 (82)
116 TIGR02740 TraF-like TraF-like 97.2 0.0012 2.6E-08 64.1 8.6 90 257-346 159-261 (271)
117 KOG1752 Glutaredoxin and relat 97.2 0.00077 1.7E-08 56.8 5.8 83 259-343 7-89 (104)
118 smart00594 UAS UAS domain. 97.2 0.0022 4.7E-08 54.5 8.7 94 246-343 9-119 (122)
119 cd02964 TryX_like_family Trypa 97.1 0.00088 1.9E-08 57.1 5.4 75 257-331 10-112 (132)
120 cd02966 TlpA_like_family TlpA- 97.1 0.0011 2.5E-08 52.4 5.6 64 264-327 19-103 (116)
121 PRK14018 trifunctional thiored 97.1 0.0023 5E-08 67.6 9.4 79 268-346 60-170 (521)
122 TIGR03143 AhpF_homolog putativ 97.1 0.00092 2E-08 70.7 6.5 79 257-343 468-552 (555)
123 PTZ00062 glutaredoxin; Provisi 97.1 0.0014 3.1E-08 61.3 7.0 90 255-351 102-196 (204)
124 KOG0908 Thioredoxin-like prote 97.1 0.00094 2E-08 64.2 5.8 68 268-343 25-103 (288)
125 cd02960 AGR Anterior Gradient 97.1 0.0018 3.8E-08 56.6 7.0 68 253-327 12-85 (130)
126 cd03009 TryX_like_TryX_NRX Try 97.0 0.00086 1.9E-08 56.7 4.6 75 257-331 11-112 (131)
127 PRK10824 glutaredoxin-4; Provi 97.0 0.0016 3.5E-08 55.7 6.1 86 258-350 7-97 (115)
128 cd02988 Phd_like_VIAF Phosduci 97.0 0.0012 2.6E-08 61.0 5.6 62 268-338 106-174 (192)
129 cd02967 mauD Methylamine utili 96.9 0.00068 1.5E-08 55.5 3.1 58 266-326 23-83 (114)
130 PF13905 Thioredoxin_8: Thiore 96.9 0.0013 2.9E-08 52.2 4.7 60 268-327 5-88 (95)
131 cd02972 DsbA_family DsbA famil 96.9 0.0024 5.2E-08 49.5 5.9 67 269-335 2-97 (98)
132 cd02958 UAS UAS family; UAS is 96.8 0.0057 1.2E-07 50.9 7.8 86 254-343 7-105 (114)
133 PTZ00062 glutaredoxin; Provisi 96.7 0.0036 7.7E-08 58.6 6.6 60 267-341 20-86 (204)
134 PRK15317 alkyl hydroperoxide r 96.7 0.0028 6E-08 66.4 6.5 86 254-344 105-193 (517)
135 cd03019 DsbA_DsbA DsbA family, 96.5 0.004 8.7E-08 54.8 5.0 29 311-339 133-161 (178)
136 COG4232 Thiol:disulfide interc 96.4 0.093 2E-06 55.9 15.3 80 257-341 467-560 (569)
137 TIGR03140 AhpF alkyl hydropero 96.2 0.0085 1.9E-07 62.7 6.4 85 254-343 106-193 (515)
138 COG1651 DsbG Protein-disulfide 96.1 0.0046 9.9E-08 58.0 3.3 38 311-348 205-242 (244)
139 cd03031 GRX_GRX_like Glutaredo 95.8 0.016 3.4E-07 51.7 5.2 72 267-343 1-82 (147)
140 cd03012 TlpA_like_DipZ_like Tl 95.8 0.028 6.1E-07 47.3 6.4 32 257-288 16-47 (126)
141 PRK11657 dsbG disulfide isomer 95.7 0.0098 2.1E-07 57.1 3.9 34 310-343 208-246 (251)
142 PRK13728 conjugal transfer pro 95.6 0.039 8.5E-07 50.9 7.2 76 268-343 73-165 (181)
143 PLN02919 haloacid dehalogenase 95.3 0.044 9.5E-07 62.6 7.9 83 265-347 421-534 (1057)
144 KOG0913 Thiol-disulfide isomer 95.2 0.0076 1.6E-07 57.5 0.9 68 268-343 43-120 (248)
145 cd03060 GST_N_Omega_like GST_N 95.2 0.06 1.3E-06 40.8 5.8 57 269-331 2-59 (71)
146 TIGR02661 MauD methylamine deh 94.9 0.095 2.1E-06 47.8 7.5 22 267-288 77-98 (189)
147 COG0526 TrxA Thiol-disulfide i 94.7 0.054 1.2E-06 41.7 4.6 51 272-327 40-95 (127)
148 cd03008 TryX_like_RdCVF Trypar 94.6 0.057 1.2E-06 48.0 5.0 23 266-288 27-49 (146)
149 PF13728 TraF: F plasmid trans 94.3 0.19 4E-06 47.3 7.9 86 258-343 114-212 (215)
150 PF08534 Redoxin: Redoxin; In 94.1 0.092 2E-06 44.9 5.1 81 257-337 21-136 (146)
151 KOG2501 Thioredoxin, nucleored 93.8 0.058 1.3E-06 48.7 3.3 63 265-327 34-121 (157)
152 COG2143 Thioredoxin-related pr 93.6 0.17 3.7E-06 45.9 5.9 85 257-341 35-141 (182)
153 cd00570 GST_N_family Glutathio 93.6 0.24 5.1E-06 35.4 5.7 59 269-332 2-60 (71)
154 cd03051 GST_N_GTT2_like GST_N 93.5 0.19 4.1E-06 37.5 5.2 58 268-330 1-61 (74)
155 cd03036 ArsC_like Arsenate Red 93.3 0.088 1.9E-06 44.2 3.5 30 268-300 1-30 (111)
156 cd03035 ArsC_Yffb Arsenate Red 93.3 0.096 2.1E-06 43.8 3.7 47 268-318 1-49 (105)
157 PF00578 AhpC-TSA: AhpC/TSA fa 93.3 0.17 3.7E-06 41.6 5.1 32 257-288 18-50 (124)
158 cd03045 GST_N_Delta_Epsilon GS 93.2 0.26 5.7E-06 37.1 5.8 61 268-331 1-61 (74)
159 PRK00611 putative disulfide ox 93.2 0.44 9.4E-06 42.0 7.8 59 68-132 70-130 (135)
160 PF06110 DUF953: Eukaryotic pr 92.9 0.029 6.3E-07 48.4 -0.1 58 266-327 22-95 (119)
161 cd03037 GST_N_GRX2 GST_N famil 92.8 0.3 6.6E-06 36.8 5.5 56 268-332 1-59 (71)
162 TIGR01617 arsC_related transcr 92.8 0.14 2.9E-06 43.3 3.9 63 268-335 1-66 (117)
163 cd03059 GST_N_SspA GST_N famil 92.7 0.44 9.5E-06 35.7 6.3 56 268-331 1-58 (73)
164 cd02977 ArsC_family Arsenate R 92.7 0.12 2.5E-06 42.6 3.2 30 268-300 1-32 (105)
165 cd03040 GST_N_mPGES2 GST_N fam 92.1 0.47 1E-05 36.2 5.9 53 268-328 2-54 (77)
166 PF14595 Thioredoxin_9: Thiore 91.6 0.13 2.7E-06 44.7 2.3 72 253-327 30-103 (129)
167 PRK01655 spxA transcriptional 90.9 0.25 5.4E-06 42.9 3.5 26 268-296 2-27 (131)
168 cd02970 PRX_like2 Peroxiredoxi 90.8 0.52 1.1E-05 39.8 5.4 53 268-324 28-84 (149)
169 PRK11509 hydrogenase-1 operon 90.6 0.53 1.1E-05 41.4 5.3 38 310-347 80-122 (132)
170 PF03190 Thioredox_DsbH: Prote 90.4 0.35 7.7E-06 43.9 4.2 73 253-331 26-115 (163)
171 cd03022 DsbA_HCCA_Iso DsbA fam 90.2 0.27 5.8E-06 43.8 3.2 34 310-343 156-189 (192)
172 PRK03113 putative disulfide ox 90.2 1.4 3E-05 39.0 7.6 61 67-132 70-134 (139)
173 cd03017 PRX_BCP Peroxiredoxin 89.6 0.99 2.1E-05 37.9 6.1 25 264-288 23-48 (140)
174 cd03041 GST_N_2GST_N GST_N fam 89.5 1 2.3E-05 34.7 5.7 54 268-328 2-57 (77)
175 cd02969 PRX_like1 Peroxiredoxi 89.5 0.93 2E-05 40.1 6.1 25 264-288 25-49 (171)
176 PF13417 GST_N_3: Glutathione 89.3 1.1 2.4E-05 34.2 5.7 58 270-333 1-58 (75)
177 cd03015 PRX_Typ2cys Peroxiredo 88.4 2.2 4.7E-05 38.0 7.7 32 257-288 22-54 (173)
178 cd03055 GST_N_Omega GST_N fami 88.3 1.5 3.2E-05 34.9 5.9 55 268-330 19-76 (89)
179 cd03032 ArsC_Spx Arsenate Redu 88.3 0.6 1.3E-05 39.3 3.8 47 268-318 2-50 (115)
180 PRK12559 transcriptional regul 88.3 0.53 1.2E-05 40.9 3.6 46 268-317 2-49 (131)
181 cd03056 GST_N_4 GST_N family, 88.3 1.7 3.6E-05 32.3 5.9 59 268-331 1-61 (73)
182 cd03014 PRX_Atyp2cys Peroxired 87.9 0.62 1.3E-05 39.7 3.7 32 257-288 19-51 (143)
183 PF01323 DSBA: DSBA-like thior 87.8 0.41 9E-06 42.5 2.7 34 310-343 156-190 (193)
184 cd02991 UAS_ETEA UAS family, E 87.3 2.2 4.8E-05 36.2 6.7 85 254-343 7-107 (116)
185 PTZ00056 glutathione peroxidas 87.1 2 4.4E-05 39.6 6.9 32 257-288 32-63 (199)
186 TIGR01626 ytfJ_HI0045 conserve 86.7 1.6 3.5E-05 40.4 5.9 80 264-343 59-174 (184)
187 PRK00522 tpx lipid hydroperoxi 85.5 1 2.2E-05 40.2 3.9 64 257-323 37-103 (167)
188 PRK13190 putative peroxiredoxi 85.5 4 8.6E-05 37.7 7.9 32 257-288 20-52 (202)
189 PRK13703 conjugal pilus assemb 85.3 4.1 9E-05 39.4 8.2 80 264-343 143-235 (248)
190 cd03018 PRX_AhpE_like Peroxire 85.2 1.5 3.3E-05 37.3 4.7 33 256-288 19-53 (149)
191 COG4545 Glutaredoxin-related p 85.1 1.2 2.5E-05 35.8 3.6 65 269-334 5-78 (85)
192 KOG3425 Uncharacterized conser 85.1 1.5 3.4E-05 38.1 4.6 68 266-336 28-113 (128)
193 TIGR02739 TraF type-F conjugat 84.9 4.6 0.0001 39.2 8.3 80 264-343 150-242 (256)
194 PRK13344 spxA transcriptional 84.8 1.1 2.3E-05 39.1 3.6 47 268-318 2-50 (132)
195 cd03033 ArsC_15kD Arsenate Red 84.3 1.3 2.9E-05 37.5 3.9 48 268-319 2-51 (113)
196 cd00340 GSH_Peroxidase Glutath 83.6 1.8 3.9E-05 37.6 4.6 31 257-288 15-45 (152)
197 PLN02399 phospholipid hydroper 83.4 3.5 7.6E-05 39.5 6.8 32 257-288 92-123 (236)
198 PLN02412 probable glutathione 82.7 1.5 3.4E-05 39.0 3.9 32 257-288 22-53 (167)
199 cd03024 DsbA_FrnE DsbA family, 81.9 1.4 3.1E-05 39.5 3.4 34 310-343 164-198 (201)
200 PRK01749 disulfide bond format 81.5 7.8 0.00017 35.4 8.0 58 69-130 81-158 (176)
201 TIGR03137 AhpC peroxiredoxin. 79.9 8.6 0.00019 34.9 7.8 24 265-288 32-56 (187)
202 cd03058 GST_N_Tau GST_N family 78.6 7.6 0.00016 29.2 6.0 58 268-331 1-59 (74)
203 PRK09437 bcp thioredoxin-depen 78.5 3.7 7.9E-05 35.5 4.7 32 257-288 23-55 (154)
204 PRK02110 disulfide bond format 77.4 14 0.0003 33.6 8.2 59 68-131 79-158 (169)
205 PF05768 DUF836: Glutaredoxin- 75.9 8.3 0.00018 30.2 5.7 65 268-341 2-76 (81)
206 PRK10382 alkyl hydroperoxide r 75.8 11 0.00023 34.7 7.1 32 257-288 24-56 (187)
207 PRK04388 disulfide bond format 74.2 15 0.00032 33.4 7.6 61 68-132 78-160 (172)
208 cd03016 PRX_1cys Peroxiredoxin 70.9 14 0.00031 33.9 6.8 19 270-288 32-50 (203)
209 PF07098 DUF1360: Protein of u 69.2 12 0.00027 31.6 5.4 19 177-195 59-77 (105)
210 cd02971 PRX_family Peroxiredox 68.5 7.8 0.00017 32.3 4.2 22 267-288 25-47 (140)
211 PTZ00253 tryparedoxin peroxida 67.5 20 0.00043 32.8 7.0 33 256-288 28-61 (199)
212 COG3019 Predicted metal-bindin 66.2 7.2 0.00016 34.8 3.6 77 268-349 28-104 (149)
213 PRK10954 periplasmic protein d 64.3 6 0.00013 36.5 2.9 23 312-334 158-180 (207)
214 cd03053 GST_N_Phi GST_N family 63.4 33 0.00071 25.6 6.4 59 268-331 2-62 (76)
215 PRK15000 peroxidase; Provision 62.9 35 0.00076 31.5 7.7 21 268-288 38-59 (200)
216 TIGR00014 arsC arsenate reduct 60.9 15 0.00032 30.9 4.5 50 268-319 1-50 (114)
217 PRK13189 peroxiredoxin; Provis 60.6 29 0.00063 32.6 6.8 32 257-288 27-60 (222)
218 TIGR01598 holin_phiLC3 holin, 60.1 41 0.0009 27.1 6.6 36 194-230 28-63 (78)
219 TIGR02540 gpx7 putative glutat 59.5 7 0.00015 33.9 2.3 32 257-288 15-46 (153)
220 cd03049 GST_N_3 GST_N family, 58.8 36 0.00078 25.3 5.9 57 268-330 1-60 (73)
221 PRK10853 putative reductase; P 58.7 14 0.0003 31.6 3.9 60 268-333 2-63 (118)
222 cd02968 SCO SCO (an acronym fo 57.4 8.1 0.00018 32.4 2.3 25 264-288 22-47 (142)
223 PRK02110 disulfide bond format 57.3 73 0.0016 28.9 8.6 33 160-193 24-56 (169)
224 PRK01749 disulfide bond format 56.2 95 0.0021 28.3 9.2 45 148-193 12-56 (176)
225 COG1495 DsbB Disulfide bond fo 53.7 1.1E+02 0.0023 27.9 9.0 38 156-194 21-58 (170)
226 PTZ00256 glutathione peroxidas 52.5 11 0.00024 34.0 2.5 20 269-288 46-65 (183)
227 PF14673 DUF4459: Domain of un 51.9 5.5 0.00012 34.3 0.4 17 268-289 93-109 (159)
228 PRK04307 putative disulfide ox 50.8 99 0.0021 29.5 8.6 49 148-197 23-72 (218)
229 PRK04388 disulfide bond format 50.8 1.1E+02 0.0024 27.7 8.7 36 161-197 22-57 (172)
230 KOG0914 Thioredoxin-like prote 50.0 83 0.0018 30.5 7.8 74 257-338 137-227 (265)
231 PRK09481 sspA stringent starva 49.8 47 0.001 30.2 6.2 55 268-330 11-67 (211)
232 PRK10954 periplasmic protein d 49.7 8.3 0.00018 35.5 1.2 20 267-286 40-59 (207)
233 PF05297 Herpes_LMP1: Herpesvi 49.7 5.5 0.00012 39.6 0.0 62 162-228 63-125 (381)
234 cd03034 ArsC_ArsC Arsenate Red 47.2 32 0.00069 28.7 4.3 47 268-318 1-49 (112)
235 TIGR01616 nitro_assoc nitrogen 46.0 28 0.0006 30.1 3.8 48 267-318 2-51 (126)
236 cd03052 GST_N_GDAP1 GST_N fami 44.8 87 0.0019 23.7 6.1 61 268-331 1-61 (73)
237 PRK10606 btuE putative glutath 44.0 42 0.00092 30.8 4.9 71 257-329 18-101 (183)
238 PTZ00137 2-Cys peroxiredoxin; 43.0 1E+02 0.0022 30.0 7.6 32 257-288 90-123 (261)
239 cd03042 GST_N_Zeta GST_N famil 42.5 91 0.002 22.7 5.8 61 268-331 1-61 (73)
240 PRK10026 arsenate reductase; P 42.5 44 0.00095 29.6 4.6 51 267-319 3-53 (141)
241 COG2761 FrnE Predicted dithiol 42.3 28 0.00061 33.3 3.5 32 312-343 175-207 (225)
242 cd03054 GST_N_Metaxin GST_N fa 38.6 77 0.0017 23.5 4.9 46 274-334 14-61 (72)
243 cd03061 GST_N_CLIC GST_N famil 38.5 82 0.0018 25.8 5.3 52 273-332 19-72 (91)
244 COG1393 ArsC Arsenate reductas 37.4 62 0.0013 27.6 4.6 48 268-319 3-52 (117)
245 PRK13599 putative peroxiredoxi 37.1 50 0.0011 30.9 4.4 20 269-288 34-53 (215)
246 cd03038 GST_N_etherase_LigE GS 36.9 57 0.0012 25.1 4.0 52 274-331 14-68 (84)
247 cd03050 GST_N_Theta GST_N fami 36.6 1.5E+02 0.0033 22.0 6.3 61 268-331 1-61 (76)
248 COG0266 Nei Formamidopyrimidin 34.7 8.7 0.00019 37.8 -1.2 10 272-281 264-273 (273)
249 PRK03113 putative disulfide ox 34.4 3E+02 0.0065 24.3 8.6 33 161-194 21-53 (139)
250 PRK01103 formamidopyrimidine/5 34.2 8.1 0.00018 37.5 -1.5 11 272-282 264-274 (274)
251 cd03030 GRX_SH3BGR Glutaredoxi 32.0 86 0.0019 25.6 4.4 59 278-342 18-81 (92)
252 COG3531 Predicted protein-disu 31.7 30 0.00064 32.8 1.8 22 311-332 164-187 (212)
253 COG3529 Predicted nucleic-acid 31.7 28 0.00062 26.8 1.4 31 270-303 7-39 (66)
254 PF13743 Thioredoxin_5: Thiore 31.3 28 0.0006 31.5 1.6 32 310-341 136-174 (176)
255 cd03013 PRX5_like Peroxiredoxi 29.0 38 0.00083 29.8 2.0 62 257-323 21-93 (155)
256 PRK00611 putative disulfide ox 28.9 3E+02 0.0065 24.3 7.6 34 160-194 19-52 (135)
257 TIGR03143 AhpF_homolog putativ 28.5 1E+02 0.0022 32.8 5.5 55 267-327 369-425 (555)
258 PF04531 Phage_holin_1: Bacter 28.0 1.7E+02 0.0038 23.5 5.5 21 210-230 46-66 (84)
259 TIGR02182 GRXB Glutaredoxin, G 27.9 1.3E+02 0.0028 27.4 5.5 52 269-329 1-55 (209)
260 PRK02983 lysS lysyl-tRNA synth 27.1 2.4E+02 0.0053 33.1 8.5 19 179-197 111-129 (1094)
261 PF06053 DUF929: Domain of unk 26.6 29 0.00063 33.7 0.9 20 264-283 58-77 (249)
262 COG1138 CcmF Cytochrome c biog 26.1 5.2E+02 0.011 28.7 10.2 64 68-132 125-192 (648)
263 PF07330 DUF1467: Protein of u 26.0 2.1E+02 0.0046 23.3 5.7 32 39-70 28-60 (85)
264 cd03021 DsbA_GSTK DsbA family, 25.3 61 0.0013 29.6 2.8 33 310-342 168-205 (209)
265 cd03039 GST_N_Sigma_like GST_N 24.9 1.3E+02 0.0029 22.1 4.1 56 269-331 2-59 (72)
266 PRK14811 formamidopyrimidine-D 24.8 11 0.00024 36.6 -2.4 13 272-284 254-266 (269)
267 PRK13945 formamidopyrimidine-D 23.2 18 0.00039 35.3 -1.3 10 272-281 273-282 (282)
268 PRK10387 glutaredoxin 2; Provi 23.0 2E+02 0.0043 25.6 5.7 53 268-329 1-56 (210)
269 COG3917 NahD 2-hydroxychromene 22.9 67 0.0015 30.1 2.5 33 310-342 165-197 (203)
270 cd03044 GST_N_EF1Bgamma GST_N 22.6 2.5E+02 0.0054 20.9 5.3 56 269-330 2-60 (75)
271 KOG3029 Glutathione S-transfer 22.5 1.9E+02 0.0041 29.1 5.5 66 255-330 76-145 (370)
272 PLN00092 photosystem I reactio 22.4 1.2E+02 0.0027 26.6 3.8 17 68-84 109-125 (137)
273 PF12725 DUF3810: Protein of u 21.9 1.4E+02 0.0029 29.9 4.6 29 103-131 10-39 (318)
274 PF06764 DUF1223: Protein of u 21.5 2.1E+02 0.0045 26.9 5.5 73 268-340 2-89 (202)
275 PRK14810 formamidopyrimidine-D 21.2 22 0.00048 34.6 -1.1 11 271-281 262-272 (272)
No 1
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=99.95 E-value=9.3e-28 Score=210.70 Aligned_cols=130 Identities=37% Similarity=0.570 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcC-----CCCCCCCC-ccccccccccccccccCCChhHHHHHHHHHHHHHHHHh-cc
Q 017869 63 YGWCAGIGGVGFLETTYLSYLKLTN-----SDAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-AR 135 (365)
Q Consensus 63 ~~~i~~la~iGl~~S~yLt~~k~~~-----~~~~C~i~-~~sC~~Vl~S~ya~lfGiP~sl~Gl~~Y~~v~~lal~~-~~ 135 (365)
..++++++++|+++|.||+++|++. +++.||+| ..||++|++||||++||+||+++|+++|++++.+++.. .+
T Consensus 5 ~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~~~~~l~~~~~~~ 84 (142)
T smart00756 5 RWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYLVVLALAVLGLLG 84 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 4556789999999999999999853 34899998 88999999999999999999999999999999888765 34
Q ss_pred ccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhhc
Q 017869 136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (365)
Q Consensus 136 ~~~~~~~~~~~~~~~ll~~s~~~~~~s~yllyi~~~~lI~a~C~~Cl~s~~isi~L~~ltl~~ 198 (365)
.+.+ ++.|+.++.+++++.++++|++|++.++ ||++||||+++|++++++|+++..+
T Consensus 85 ~~~~-----~~~~~~l~~~~~~~~~~s~yl~y~~~~v-i~~~C~~C~~~~~~~~~lf~~~~~~ 141 (142)
T smart00756 85 VTLP-----RWTWRLLFLGSLAGAVFSVYLIYLLVFV-IKALCLYCILSAVVSISLFILVTIG 141 (142)
T ss_pred ccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHhc
Confidence 4444 4556677777888889999999999998 6999999999999999999987654
No 2
>PRK14889 VKOR family protein; Provisional
Probab=99.92 E-value=5.9e-25 Score=193.47 Aligned_cols=127 Identities=24% Similarity=0.377 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh--hcCCCCCCCCC-ccccccccccccccccCCChhHHHHHHHHHHHHHHHHhccccCCcc
Q 017869 65 WCAGIGGVGFLETTYLSYLK--LTNSDAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIG 141 (365)
Q Consensus 65 ~i~~la~iGl~~S~yLt~~k--~~~~~~~C~i~-~~sC~~Vl~S~ya~lfGiP~sl~Gl~~Y~~v~~lal~~~~~~~~~~ 141 (365)
++++++++|+++|.|++++| .++++++||+| ..||++|++||||++||+||+++|+++|++++++++..... .+
T Consensus 11 ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~~~l~l~~~~~~~-~~-- 87 (143)
T PRK14889 11 LLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFSANIALALLGVGT-LK-- 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHHHHHHHHHHHHcc-hh--
Confidence 34688999999999998877 35678999998 78999999999999999999999999999999888775221 11
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhhc
Q 017869 142 INESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (365)
Q Consensus 142 ~~~~~~~~~ll~~s~~~~~~s~yllyi~~~~lI~a~C~~Cl~s~~isi~L~~ltl~~ 198 (365)
++.+......+.+..+++.|++|++.|+ ||++||||+++|+++++++++....
T Consensus 88 ---~~~~~~~~~~~~~g~~~~~yL~y~~~fv-i~a~C~~C~~~~~~~~~~~~~~~~~ 140 (143)
T PRK14889 88 ---RILGRVISLWSIIGLAIVPYLVYLEVFV-LGAICIYCTIAHVSILAAFILILIK 140 (143)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHHH
Confidence 1111112222334567999999999998 6999999999999999999876544
No 3
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=99.92 E-value=1.5e-24 Score=188.38 Aligned_cols=129 Identities=35% Similarity=0.608 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC----CCCCCCC-ccccccccccccccccCCChhHHHHHHHHHHHHHHHHh-cccc
Q 017869 64 GWCAGIGGVGFLETTYLSYLKLTNS----DAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKS 137 (365)
Q Consensus 64 ~~i~~la~iGl~~S~yLt~~k~~~~----~~~C~i~-~~sC~~Vl~S~ya~lfGiP~sl~Gl~~Y~~v~~lal~~-~~~~ 137 (365)
.++.+++++|+++|.||++++++.. .++||++ ..||++|++||||++||+|++++|+++|++++.+++.. .+.+
T Consensus 3 ~~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~~~l~~~~~~~~~~~ 82 (137)
T PF07884_consen 3 ILLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFAFLLLLALLGLARRR 82 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHHHHHHHHH-----TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHHHHHHHHHHHhhccc
Confidence 3567899999999999999998654 4999988 89999999999999999999999999999999888764 2223
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhhc
Q 017869 138 FPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (365)
Q Consensus 138 ~~~~~~~~~~~~~ll~~s~~~~~~s~yllyi~~~~lI~a~C~~Cl~s~~isi~L~~ltl~~ 198 (365)
.+ ++.+..++..++++.++++|++|+|.++ +|++|+||+++|++++.++++++++
T Consensus 83 ~~-----~~~~~~l~~~~~~~~~~~~~l~~~~~~~-i~~~C~~Cl~~~~i~~~l~~l~~~~ 137 (137)
T PF07884_consen 83 LS-----RWLWLLLFALSFIGLVFSLYLIYIQIFV-IKAWCPYCLVSYAINLALFILSLIR 137 (137)
T ss_dssp -S-----TTHHHHHHHHHHHHHHHHHHHHHHHHTT-S----HHHHHHHHHHHHHHHHHHS-
T ss_pred hh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 33 3445566667777788999999999887 7999999999999999999988653
No 4
>COG4243 Predicted membrane protein [Function unknown]
Probab=99.88 E-value=4.2e-22 Score=175.95 Aligned_cols=136 Identities=26% Similarity=0.389 Sum_probs=104.9
Q ss_pred CchhHHH-HHHHHHHHHHHHHH---HHhhhcCCC--CCCCCC-ccccccccccccccccCCChhHHHHHHHHHHHHHHHH
Q 017869 60 FSPYGWC-AGIGGVGFLETTYL---SYLKLTNSD--AFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (365)
Q Consensus 60 ~~~~~~i-~~la~iGl~~S~yL---t~~k~~~~~--~~C~i~-~~sC~~Vl~S~ya~lfGiP~sl~Gl~~Y~~v~~lal~ 132 (365)
|...+|. ..++++|.+.+.-+ .+..+.++. ..|+.| ..||++|++||||++||+||+++|+++|+++.++++.
T Consensus 8 p~~~~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft~~~i~all 87 (156)
T COG4243 8 PWILGWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFTAVLIAALL 87 (156)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHHHHHHHHHH
Confidence 3344443 34455555544444 444455544 455666 8899999999999999999999999999999999987
Q ss_pred hccccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhhcchh
Q 017869 133 LARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSV 201 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~ll~~s~~~~~~s~yllyi~~~~lI~a~C~~Cl~s~~isi~L~~ltl~~~~~ 201 (365)
.-...++ +++|+.++..++.+.+++.||+|+..++ +|++|+||+++|+.++++|++...+++|
T Consensus 88 ~~~~~l~-----~~~~~~l~v~~~~g~~f~~yLiY~e~~~-~~alC~YCtv~h~~~l~~~vl~~~~~~~ 150 (156)
T COG4243 88 GVAGVLE-----RWTWIGLLVGSLVGSAFVPYLIYLELFV-IGALCLYCTVAHLSILLLFVLATAGRRW 150 (156)
T ss_pred HHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6222233 5667767777888889999999998887 7999999999999999999998888775
No 5
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1e-11 Score=128.14 Aligned_cols=71 Identities=24% Similarity=0.466 Sum_probs=57.0
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhcc---------CceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQ---------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRA 333 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~---------l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~ 333 (365)
+.|| ||||+||+++.++|.+.| +. +..|||..+ .++|.+++|+||||..| ||+ .|+
T Consensus 47 VeFY-APWCghck~LaPey~kAA-~~Lke~~s~i~LakVDat~~--------~~~~~~y~v~gyPTlkiFrnG~~~~~Y~ 116 (493)
T KOG0190|consen 47 VEFY-APWCGHCKALAPEYEKAA-TELKEEGSPVKLAKVDATEE--------SDLASKYEVRGYPTLKIFRNGRSAQDYN 116 (493)
T ss_pred EEEE-chhhhhhhhhCcHHHHHH-HHhhccCCCceeEEeecchh--------hhhHhhhcCCCCCeEEEEecCCcceecc
Confidence 5555 999999999999999843 22 346888753 48999999999999998 774 599
Q ss_pred CCCChhhhhhhhhhh
Q 017869 334 RPVRPRQGIWLSRNE 348 (365)
Q Consensus 334 G~~~l~~l~~~~~~e 348 (365)
|.|+.+.++.|-+++
T Consensus 117 G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 117 GPREADGIVKWLKKQ 131 (493)
T ss_pred CcccHHHHHHHHHhc
Confidence 999999986655544
No 6
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.19 E-value=5.6e-11 Score=96.68 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=55.1
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhc---c--CceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPV 336 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~---~--l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~ 336 (365)
=+.+|+|+||+||+++++.|.+-+.+ . +-.|+|+.+ .++|++.+|++|||+.+ +|+ +|.|.+
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~ 92 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD--------RMLCRSQGVNSYPSLYVFPSGMNPEKYYGDR 92 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc--------HHHHHHcCCCccCEEEEEcCCCCcccCCCCC
Confidence 35567799999999999999873311 1 236888742 47899999999999987 664 699999
Q ss_pred Chhhhhhhh
Q 017869 337 RPRQGIWLS 345 (365)
Q Consensus 337 ~l~~l~~~~ 345 (365)
+.++++.|+
T Consensus 93 ~~~~l~~f~ 101 (101)
T cd03003 93 SKESLVKFA 101 (101)
T ss_pred CHHHHHhhC
Confidence 999987653
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.10 E-value=1.7e-10 Score=97.78 Aligned_cols=70 Identities=20% Similarity=0.266 Sum_probs=53.1
Q ss_pred cceEEEccCCCHhHHHHHHHHhhHhh--c-cC--ceEEcCCCCCcCccccHHHH-HhcCCceeeEEEE--CCe---ecCC
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGSEAV--K-QL--NYVECFPDGYRKGTKIAKAC-SDAKIEGFPTWVI--NGQ---WRAR 334 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgkeA~--~-~l--~yVeC~~~~~~~~~~~~~~C-~~~~I~gyPTw~i--nG~---~y~G 334 (365)
.-+.+|+||||+||+.+++.|++-|. + .+ -.|||+.+ .++| ++++|++|||+++ ||+ +|.|
T Consensus 31 ~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~--------~~l~~~~~~I~~~PTl~lf~~g~~~~~y~G 102 (113)
T cd03006 31 VSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP--------QGKCRKQKHFFYFPVIHLYYRSRGPIEYKG 102 (113)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC--------hHHHHHhcCCcccCEEEEEECCccceEEeC
Confidence 34566669999999999999998431 1 22 35788642 3779 5899999999887 664 7999
Q ss_pred CCChhhhhh
Q 017869 335 PVRPRQGIW 343 (365)
Q Consensus 335 ~~~l~~l~~ 343 (365)
.++.++++.
T Consensus 103 ~~~~~~i~~ 111 (113)
T cd03006 103 PMRAPYMEK 111 (113)
T ss_pred CCCHHHHHh
Confidence 999999854
No 8
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.09 E-value=3.3e-10 Score=93.39 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=53.4
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhc---------cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe----
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVK---------QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---- 330 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~---------~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---- 330 (365)
+..|+||||+||+++++.|.+.+.+ ++ ..|+|+.+ .++|++++|++|||.++ ||+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~v~~~Ptl~~~~~g~~~~~ 93 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE--------SDIADRYRINKYPTLKLFRNGMMMKR 93 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--------HHHHHhCCCCcCCEEEEEeCCcCcce
Confidence 5566699999999999999763211 23 35888742 48899999999999987 664
Q ss_pred ecCCCCChhhhhhh
Q 017869 331 WRARPVRPRQGIWL 344 (365)
Q Consensus 331 ~y~G~~~l~~l~~~ 344 (365)
.|.|.++.++++.|
T Consensus 94 ~~~g~~~~~~l~~f 107 (108)
T cd02996 94 EYRGQRSVEALAEF 107 (108)
T ss_pred ecCCCCCHHHHHhh
Confidence 58999999998654
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.05 E-value=6e-10 Score=89.15 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=57.6
Q ss_pred ccceEEEccCCCHhHHHHHHHHhhHh--hc-cCc--eEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC---eecCC
Q 017869 265 AIGAKMYGAFWCSHCLEQKQMFGSEA--VK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG---QWRAR 334 (365)
Q Consensus 265 ~~gak~YgApWCpHC~~qk~~fgkeA--~~-~l~--yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG---~~y~G 334 (365)
+.-+.+|+++||+||+++++.|.+-+ .. ++. .|||+. ..++|++.+|+++||+++ || ++|.|
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~--------~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g 89 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE--------NKELCKKYGVKSVPTIIFFKNGKEVKRYNG 89 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--------SHHHHHHTTCSSSSEEEEEETTEEEEEEES
T ss_pred CCEEEEEeCCCCCccccccceecccccccccccccchhhhhc--------cchhhhccCCCCCCEEEEEECCcEEEEEEC
Confidence 44577788999999999999998732 22 333 477763 358999999999999888 77 46999
Q ss_pred CCChhhhhhhhh
Q 017869 335 PVRPRQGIWLSR 346 (365)
Q Consensus 335 ~~~l~~l~~~~~ 346 (365)
.++.+++..+-+
T Consensus 90 ~~~~~~l~~~i~ 101 (103)
T PF00085_consen 90 PRNAESLIEFIE 101 (103)
T ss_dssp SSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999976544
No 10
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.05 E-value=3.6e-10 Score=96.59 Aligned_cols=76 Identities=11% Similarity=-0.004 Sum_probs=57.6
Q ss_pred cceEEEcc--CCCH---hHHHHHHHHhhHhhcc--CceEEcCCCCCcCccccHHHHHhcCCc--eeeEEEE--CCe----
Q 017869 266 IGAKMYGA--FWCS---HCLEQKQMFGSEAVKQ--LNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--NGQ---- 330 (365)
Q Consensus 266 ~gak~YgA--pWCp---HC~~qk~~fgkeA~~~--l~yVeC~~~~~~~~~~~~~~C~~~~I~--gyPTw~i--nG~---- 330 (365)
+=++|| | |||+ ||+++.+.+.+. ... +..|+|+..+. +.+.++|+++||+ ||||+.+ ||+
T Consensus 21 vlV~F~-A~~Pwc~k~~~~~~LA~e~~~a-a~~v~lakVd~~d~~~---~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~ 95 (116)
T cd03007 21 SLVKFD-TAYPYGEKHEAFTRLAESSASA-TDDLLVAEVGIKDYGE---KLNMELGERYKLDKESYPVIYLFHGGDFENP 95 (116)
T ss_pred EEEEEe-CCCCCCCChHHHHHHHHHHHhh-cCceEEEEEecccccc---hhhHHHHHHhCCCcCCCCEEEEEeCCCcCCC
Confidence 345666 9 9999 999999999873 333 45788964321 1246899999999 9999887 673
Q ss_pred -ecCCC-CChhhhhhhhh
Q 017869 331 -WRARP-VRPRQGIWLSR 346 (365)
Q Consensus 331 -~y~G~-~~l~~l~~~~~ 346 (365)
.|+|. |+.++|+.+.+
T Consensus 96 ~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 96 VPYSGADVTVDALQRFLK 113 (116)
T ss_pred ccCCCCcccHHHHHHHHH
Confidence 69997 99999966543
No 11
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.05 E-value=5.5e-10 Score=86.72 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=54.8
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh---hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCe-ecCCCCChhhhh
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-WRARPVRPRQGI 342 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA---~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~-~y~G~~~l~~l~ 342 (365)
.+++|.++|||||+++++.+.+-+ ..++.+++.|-+. ..+.++++|++++||.++||+ ++.|.++.+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~------~~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME------NPQKAMEYGIMAVPAIVINGDVEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc------CHHHHHHcCCccCCEEEECCEEEEecCCCHHHHH
Confidence 478899999999999999998732 1224444444322 347789999999999999986 789999999875
Q ss_pred hh
Q 017869 343 WL 344 (365)
Q Consensus 343 ~~ 344 (365)
.+
T Consensus 76 ~~ 77 (82)
T TIGR00411 76 EA 77 (82)
T ss_pred HH
Confidence 54
No 12
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.02 E-value=9.2e-10 Score=90.63 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=53.3
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh--hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC--eecCCCCChhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG--QWRARPVRPRQG 341 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA--~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG--~~y~G~~~l~~l 341 (365)
+..|+|+|||||+++++.|.+-+ .+.+..+..|.++. ..++|++++|++|||..+ +| .+|.|.++.+++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~-----~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~~~l 96 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI-----KPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTLDSL 96 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC-----CHHHHHhcCCeecCEEEEEcCCceeEecCCCCHHHH
Confidence 55566999999999999998732 23344444443311 358899999999999887 55 469999999998
Q ss_pred hhh
Q 017869 342 IWL 344 (365)
Q Consensus 342 ~~~ 344 (365)
+.|
T Consensus 97 ~~f 99 (100)
T cd02999 97 AAF 99 (100)
T ss_pred Hhh
Confidence 654
No 13
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.01 E-value=1.1e-09 Score=89.34 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=52.8
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhc---cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC-e---ecCCC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---WRARP 335 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~---~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG-~---~y~G~ 335 (365)
=+..|+|+||+||+++++.|.+-+.+ .+ ..|||+. ..++|++.+|++|||.++ +| + +|.|.
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~ 93 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--------YESLCQQANIRAYPTIRLYPGNASKYHSYNGW 93 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--------hHHHHHHcCCCcccEEEEEcCCCCCceEccCC
Confidence 35667799999999999999873322 23 3577763 358899999999999887 54 3 69998
Q ss_pred CC-hhhhhhh
Q 017869 336 VR-PRQGIWL 344 (365)
Q Consensus 336 ~~-l~~l~~~ 344 (365)
++ .+++..|
T Consensus 94 ~~~~~~l~~~ 103 (104)
T cd03004 94 HRDADSILEF 103 (104)
T ss_pred CCCHHHHHhh
Confidence 87 8887543
No 14
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.97 E-value=1.5e-09 Score=88.73 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=54.1
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhh--c-cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC--------ee
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAV--K-QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG--------QW 331 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~--~-~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG--------~~ 331 (365)
-+.+|+|+||+||+++++.|.+-+. . .+ -.|+|+.+. +.++|++++|+++||..+ +| +.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~------~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~ 94 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK------NKPLCGKYGVQGFPTLKVFRPPKKASKHAVED 94 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc------cHHHHHHcCCCcCCEEEEEeCCCccccccccc
Confidence 3556669999999999999887331 1 22 247887532 358899999999999887 44 25
Q ss_pred cCCCCChhhhhhh
Q 017869 332 RARPVRPRQGIWL 344 (365)
Q Consensus 332 y~G~~~l~~l~~~ 344 (365)
|.|.++.++|+.|
T Consensus 95 ~~G~~~~~~l~~f 107 (109)
T cd03002 95 YNGERSAKAIVDF 107 (109)
T ss_pred ccCccCHHHHHHH
Confidence 8999999998654
No 15
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.94 E-value=2.9e-09 Score=86.28 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=54.2
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--hc--cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe--ecCCCC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--VK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--WRARPV 336 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~~--~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~--~y~G~~ 336 (365)
-+..|.|+|||||+++++.|.+-+ .+ .+ ..|+|+. +.++|++.+|++|||..+ +|+ +|.|.+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~--------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~G~~ 90 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ--------EPGLSGRFFVTALPTIYHAKDGVFRRYQGPR 90 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC--------CHhHHHHcCCcccCEEEEeCCCCEEEecCCC
Confidence 356666999999999999998732 11 12 3577763 247899999999999887 674 589999
Q ss_pred Chhhhhhhh
Q 017869 337 RPRQGIWLS 345 (365)
Q Consensus 337 ~l~~l~~~~ 345 (365)
+.++++.+.
T Consensus 91 ~~~~l~~~i 99 (101)
T cd02994 91 DKEDLISFI 99 (101)
T ss_pred CHHHHHHHH
Confidence 999986653
No 16
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.90 E-value=3e-09 Score=85.62 Aligned_cols=70 Identities=20% Similarity=0.402 Sum_probs=52.7
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--hc----cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--VK----QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRA 333 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~~----~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~ 333 (365)
-+..|+|+||+||+++++.|.+-+ .+ ++ -.|||+.+ .++|++.+|+++||+.+ +|+ +|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~ 90 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH--------RELCSEFQVRGYPTLLLFKDGEKVDKYK 90 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC--------hhhHhhcCCCcCCEEEEEeCCCeeeEee
Confidence 456677999999999999887732 21 23 35777642 47899999999999887 663 589
Q ss_pred CCCChhhhhhh
Q 017869 334 RPVRPRQGIWL 344 (365)
Q Consensus 334 G~~~l~~l~~~ 344 (365)
|.++.+++..+
T Consensus 91 G~~~~~~l~~~ 101 (102)
T cd03005 91 GTRDLDSLKEF 101 (102)
T ss_pred CCCCHHHHHhh
Confidence 99998887543
No 17
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.86 E-value=2.2e-08 Score=94.52 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=54.8
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh--hc-cCc--eEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCee---cCCCCC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA--VK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQW---RARPVR 337 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA--~~-~l~--yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~~---y~G~~~ 337 (365)
+.+|+|||||||+++++.|.+-+ .+ .+. .|||+. +.++|++++|++|||..+ ||+. +.|.++
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~--------~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s 127 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR--------ALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRS 127 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc--------cHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCC
Confidence 45566999999999999998732 11 222 356653 358899999999999887 7753 568899
Q ss_pred hhhhhhhhhhhh
Q 017869 338 PRQGIWLSRNES 349 (365)
Q Consensus 338 l~~l~~~~~~e~ 349 (365)
.++++.+.+...
T Consensus 128 ~e~L~~fi~~~~ 139 (224)
T PTZ00443 128 TEKLAAFALGDF 139 (224)
T ss_pred HHHHHHHHHHHH
Confidence 999977765554
No 18
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.85 E-value=6.9e-09 Score=77.87 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=52.4
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQGIW 343 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~~ 343 (365)
+++|+++|||+|+++++.+++. .++|.+.|-+... +...++++.+++.++||++++|+.+.| .+.+++..
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---~i~~~~vdi~~~~--~~~~~~~~~~~~~~vP~~~~~~~~~~g-~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---GIAFEEIDVEKDS--AAREEVLKVLGQRGVPVIVIGHKIIVG-FDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---CCeEEEEeccCCH--HHHHHHHHHhCCCcccEEEECCEEEee-CCHHHHHH
Confidence 6899999999999999999862 5677666543211 112356788999999999999988878 46666644
No 19
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.82 E-value=1.8e-08 Score=81.12 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=52.4
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--h-ccC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC----eecCCC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--V-KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----QWRARP 335 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~-~~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG----~~y~G~ 335 (365)
-+.+|+|+||+||+++++.|.+-+ . .++ .+++|+. ..++|++.+|+++||..+ +| ..|.|.
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~--------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~ 92 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV--------HQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGG 92 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc--------hHHHHHHCCCCccCEEEEECCCCcceeecCCC
Confidence 355666999999999999997732 1 223 3466653 247899999999999876 45 359999
Q ss_pred CChhhhhhh
Q 017869 336 VRPRQGIWL 344 (365)
Q Consensus 336 ~~l~~l~~~ 344 (365)
++.++++.|
T Consensus 93 ~~~~~l~~~ 101 (103)
T cd03001 93 RTAKAIVSA 101 (103)
T ss_pred CCHHHHHHH
Confidence 999998554
No 20
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.81 E-value=1.8e-08 Score=83.52 Aligned_cols=73 Identities=11% Similarity=0.183 Sum_probs=52.4
Q ss_pred ccceEEEccCCCHhHHHHHHHHhhHh--hc--cC--ceEEcCCCCCcCccccHHHHHh-cCCceeeEEEE--CC----ee
Q 017869 265 AIGAKMYGAFWCSHCLEQKQMFGSEA--VK--QL--NYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVI--NG----QW 331 (365)
Q Consensus 265 ~~gak~YgApWCpHC~~qk~~fgkeA--~~--~l--~yVeC~~~~~~~~~~~~~~C~~-~~I~gyPTw~i--nG----~~ 331 (365)
+.-+.+|+|+|||||+++++.|.+-+ .+ .+ ..|+|+.+ +..+|.+ .+|++|||.++ +| ..
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~-------~~~~~~~~~~v~~~Pti~~f~~~~~~~~~ 94 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE-------QREFAKEELQLKSFPTILFFPKNSRQPIK 94 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc-------chhhHHhhcCCCcCCEEEEEcCCCCCcee
Confidence 34566777999999999999998732 21 23 24777652 1366875 89999999886 33 46
Q ss_pred cCCC-CChhhhhhh
Q 017869 332 RARP-VRPRQGIWL 344 (365)
Q Consensus 332 y~G~-~~l~~l~~~ 344 (365)
|+|. |+.++++.|
T Consensus 95 y~g~~~~~~~l~~f 108 (109)
T cd02993 95 YPSEQRDVDSLLMF 108 (109)
T ss_pred ccCCCCCHHHHHhh
Confidence 9995 899998543
No 21
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.79 E-value=2.3e-08 Score=80.10 Aligned_cols=69 Identities=16% Similarity=0.069 Sum_probs=52.1
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh--h-ccC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCCC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA--V-KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPVR 337 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA--~-~~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~~ 337 (365)
+..|+|+||+||+++++.+.+-+ . ..+ -.|+|+. ..++|++.+|+++||.++ +|+ ++.|.++
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--------~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 87 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--------QPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQP 87 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--------CHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCC
Confidence 55666999999999999998732 1 122 2467764 358899999999999987 774 5889998
Q ss_pred hhhhhhh
Q 017869 338 PRQGIWL 344 (365)
Q Consensus 338 l~~l~~~ 344 (365)
.+++..+
T Consensus 88 ~~~l~~~ 94 (96)
T cd02956 88 EEQLRQM 94 (96)
T ss_pred HHHHHHH
Confidence 8887543
No 22
>PHA02125 thioredoxin-like protein
Probab=98.79 E-value=2e-08 Score=78.38 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=46.6
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCe---ecCCC-CChhhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ---WRARP-VRPRQGI 342 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~---~y~G~-~~l~~l~ 342 (365)
+.+|+|+|||+|+..++.+.+-+ ..+++.|.+. ..+++++++|+++||.+ +|+ ++.|. +++.+|+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---~~~~~vd~~~------~~~l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~ 70 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---YTYVDVDTDE------GVELTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELK 70 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---heEEeeeCCC------CHHHHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHH
Confidence 56788999999999999997532 2345554332 35889999999999987 664 46664 4445553
No 23
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.79 E-value=3.4e-09 Score=103.21 Aligned_cols=71 Identities=17% Similarity=0.352 Sum_probs=54.1
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh--hccC--c----eEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC--eecCCC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA--VKQL--N----YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG--QWRARP 335 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA--~~~l--~----yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG--~~y~G~ 335 (365)
+.|| ||||+|||++++.|.+-. ++.+ | ..||+. .+.++.+.||+||||..+ || ..|.|.
T Consensus 48 VdFY-APWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~--------f~aiAnefgiqGYPTIk~~kgd~a~dYRG~ 118 (468)
T KOG4277|consen 48 VDFY-APWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR--------FPAIANEFGIQGYPTIKFFKGDHAIDYRGG 118 (468)
T ss_pred EEee-chhhhhcccccchhHHhCcchhhcCCceeeccccccc--------chhhHhhhccCCCceEEEecCCeeeecCCC
Confidence 3455 999999999999997611 2222 2 355542 568899999999999987 55 469999
Q ss_pred CChhhhhhhhhh
Q 017869 336 VRPRQGIWLSRN 347 (365)
Q Consensus 336 ~~l~~l~~~~~~ 347 (365)
|+.++++.|+..
T Consensus 119 R~Kd~iieFAhR 130 (468)
T KOG4277|consen 119 REKDAIIEFAHR 130 (468)
T ss_pred ccHHHHHHHHHh
Confidence 999999987754
No 24
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.77 E-value=1.4e-08 Score=83.14 Aligned_cols=72 Identities=14% Similarity=0.284 Sum_probs=53.7
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhc----c--C--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC--eecCC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVK----Q--L--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG--QWRAR 334 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~----~--l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG--~~y~G 334 (365)
-+..|.|+|||+|+++++.+.+-+.+ . + ..++|+. ..++|++.+|+++||.++ || .+|.|
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--------~~~~~~~~~I~~~Pt~~l~~~~~~~~~~G 89 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--------YSSIASEFGVRGYPTIKLLKGDLAYNYRG 89 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------CHhHHhhcCCccccEEEEEcCCCceeecC
Confidence 35666799999999999998873211 1 2 2467753 347899999999999887 44 35899
Q ss_pred CCChhhhhhhhh
Q 017869 335 PVRPRQGIWLSR 346 (365)
Q Consensus 335 ~~~l~~l~~~~~ 346 (365)
.++.++++.+.+
T Consensus 90 ~~~~~~l~~~~~ 101 (104)
T cd03000 90 PRTKDDIVEFAN 101 (104)
T ss_pred CCCHHHHHHHHH
Confidence 999999876654
No 25
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.77 E-value=2.4e-08 Score=83.47 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=54.2
Q ss_pred cceEEEccCCCHhHHHHHHHHhhHh--hc--cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCC
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGSEA--VK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRAR 334 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgkeA--~~--~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G 334 (365)
.-+..|+||||++|+.+++.|.+-+ .+ ++ ..|+|+. +.++|++.+|+++||.++ ||+ ++.|
T Consensus 26 ~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--------~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G 97 (111)
T cd02963 26 PYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--------ERRLARKLGAHSVPAIVGIINGQVTFYHDS 97 (111)
T ss_pred eEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--------cHHHHHHcCCccCCEEEEEECCEEEEEecC
Confidence 3456666999999999999987622 21 23 3577764 247899999999999886 775 4689
Q ss_pred CCChhhhhhhhh
Q 017869 335 PVRPRQGIWLSR 346 (365)
Q Consensus 335 ~~~l~~l~~~~~ 346 (365)
.++.++++.+-+
T Consensus 98 ~~~~~~l~~~i~ 109 (111)
T cd02963 98 SFTKQHVVDFVR 109 (111)
T ss_pred CCCHHHHHHHHh
Confidence 899998876544
No 26
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.74 E-value=2.7e-08 Score=79.98 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=51.4
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhh--cc---C--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe-----ec
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAV--KQ---L--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----WR 332 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~--~~---l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~-----~y 332 (365)
-+.+|+|+||+||+..++.|.+-+. +. + ..++|+.+ +.|.+.+++++||+.+ +|+ +|
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~~Pt~~~~~~~~~~~~~~~ 91 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN---------DVPSEFVVDGFPTILFFPAGDKSNPIKY 91 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch---------hhhhhccCCCCCEEEEEcCCCcCCceEc
Confidence 3566779999999999999987331 11 2 34777632 4577889999999887 554 69
Q ss_pred CCCCChhhhhhh
Q 017869 333 ARPVRPRQGIWL 344 (365)
Q Consensus 333 ~G~~~l~~l~~~ 344 (365)
.|.++.++++.|
T Consensus 92 ~g~~~~~~l~~f 103 (104)
T cd02995 92 EGDRTLEDLIKF 103 (104)
T ss_pred cCCcCHHHHHhh
Confidence 999999998654
No 27
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.73 E-value=3.2e-08 Score=79.47 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=53.0
Q ss_pred cceEEEccCCCHhHHHHHHHHhhHh--hc---cCc--eEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC----eec
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGSEA--VK---QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----QWR 332 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgkeA--~~---~l~--yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG----~~y 332 (365)
.-+.+|+|+||+||+++++.|.+-+ .+ ++. .+||+.+ +.++|++.+|+++||+++ +| ..|
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-------NKDLAKKYGVSGFPTLKFFPKGSTEPVKY 92 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-------chhhHHhCCCCCcCEEEEEeCCCCCcccc
Confidence 3467788999999999999998732 11 122 3666541 248899999999999987 33 358
Q ss_pred CCCCChhhhhhh
Q 017869 333 ARPVRPRQGIWL 344 (365)
Q Consensus 333 ~G~~~l~~l~~~ 344 (365)
.|.++.++++.|
T Consensus 93 ~g~~~~~~l~~~ 104 (105)
T cd02998 93 EGGRDLEDLVKF 104 (105)
T ss_pred CCccCHHHHHhh
Confidence 999999888543
No 28
>PTZ00102 disulphide isomerase; Provisional
Probab=98.71 E-value=7.2e-08 Score=98.27 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=53.8
Q ss_pred cceEEEccCCCHhHHHHHHHHhhHh--hc----cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC--eecC
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGSEA--VK----QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG--QWRA 333 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgkeA--~~----~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG--~~y~ 333 (365)
.-+.+|+|+|||||++.++.|.+.+ .+ ++ ..|||+. ..++|++.+|++|||..+ || .+|.
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~--------~~~l~~~~~i~~~Pt~~~~~~g~~~~y~ 122 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE--------EMELAQEFGVRGYPTIKFFNKGNPVNYS 122 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC--------CHHHHHhcCCCcccEEEEEECCceEEec
Confidence 3466666999999999999988732 11 12 3478864 248999999999999877 55 3599
Q ss_pred CCCChhhhhhh
Q 017869 334 RPVRPRQGIWL 344 (365)
Q Consensus 334 G~~~l~~l~~~ 344 (365)
|.++.++++.+
T Consensus 123 g~~~~~~l~~~ 133 (477)
T PTZ00102 123 GGRTADGIVSW 133 (477)
T ss_pred CCCCHHHHHHH
Confidence 99999998543
No 29
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.71 E-value=5.7e-08 Score=78.20 Aligned_cols=72 Identities=25% Similarity=0.357 Sum_probs=52.3
Q ss_pred cceEEEccCCCHhHHHHHHHHhhHh--h---ccCc--eEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecC
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGSEA--V---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRA 333 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgkeA--~---~~l~--yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~ 333 (365)
.-+..|+|+||++|+++++.+.+-+ + ..+. .++|+.+. ..++|++.+|++|||.++ ||+ +|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 92 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE------HDALKEEYNVKGFPTFKYFENGKFVEKYE 92 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc------cHHHHHhCCCccccEEEEEeCCCeeEEeC
Confidence 3356677999999999998887632 1 1233 36776431 358899999999999877 664 588
Q ss_pred CCCChhhhhh
Q 017869 334 RPVRPRQGIW 343 (365)
Q Consensus 334 G~~~l~~l~~ 343 (365)
|.++.++++.
T Consensus 93 g~~~~~~l~~ 102 (104)
T cd02997 93 GERTAEDIIE 102 (104)
T ss_pred CCCCHHHHHh
Confidence 9998888754
No 30
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.71 E-value=3.5e-08 Score=83.06 Aligned_cols=55 Identities=24% Similarity=0.486 Sum_probs=40.9
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--hc----cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--VK----QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~~----~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i 327 (365)
=+.+|+|+||++|+.+++.|.+-+ .+ .+ ..|+|+.+. ..+.|++++|++|||+.+
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~------~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE------NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh------hHHHHHhCCCCCCCEEEE
Confidence 355566999999999999998732 21 12 357886432 247899999999999988
No 31
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.70 E-value=2.9e-08 Score=74.89 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=44.4
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCee
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQW 331 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~ 331 (365)
.+++|+++|||+|+++++.+.+-+ ..++.+.+.|-+. ..++.++.|+++.||..+||+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~------~~~l~~~~~i~~vPti~i~~~~ 62 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE------FPDLADEYGVMSVPAIVINGKV 62 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc------CHhHHHHcCCcccCEEEECCEE
Confidence 478999999999999999998632 2235555554332 2467889999999999999864
No 32
>PHA02278 thioredoxin-like protein
Probab=98.68 E-value=6.1e-08 Score=80.85 Aligned_cols=74 Identities=19% Similarity=0.054 Sum_probs=53.4
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhc---cCc--eEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPV 336 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~---~l~--yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~ 336 (365)
-+..|+|+|||+|+.+++.+.+-+.+ +.+ .|+.|.+..+ ..+++++++|++.||+++ ||+ ++.|..
T Consensus 17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d----~~~l~~~~~I~~iPT~i~fk~G~~v~~~~G~~ 92 (103)
T PHA02278 17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD----REKAVKLFDIMSTPVLIGYKDGQLVKKYEDQV 92 (103)
T ss_pred EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc----cHHHHHHCCCccccEEEEEECCEEEEEEeCCC
Confidence 35667799999999999999873321 223 3555543211 247899999999999998 885 578988
Q ss_pred Chhhhhhh
Q 017869 337 RPRQGIWL 344 (365)
Q Consensus 337 ~l~~l~~~ 344 (365)
+.+++..+
T Consensus 93 ~~~~l~~~ 100 (103)
T PHA02278 93 TPMQLQEL 100 (103)
T ss_pred CHHHHHhh
Confidence 88887654
No 33
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.61 E-value=9.4e-08 Score=76.37 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=52.9
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--hc---cCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--VK---QLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRAR 334 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~~---~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G 334 (365)
-+.+|+++||++|+++++.+.+-+ .+ ++.. ++|+. ..++|++.+|+++||+.+ +|+ +|.|
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g 87 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------EKDLASRFGVSGFPTIKFFPKGKKPVDYEG 87 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--------hHHHHHhCCCCcCCEEEEecCCCcceeecC
Confidence 367788999999999988887622 22 2333 55643 358899999999999976 444 6999
Q ss_pred CCChhhhhhhh
Q 017869 335 PVRPRQGIWLS 345 (365)
Q Consensus 335 ~~~l~~l~~~~ 345 (365)
.++.++++.+.
T Consensus 88 ~~~~~~l~~~i 98 (102)
T TIGR01126 88 GRDLEAIVEFV 98 (102)
T ss_pred CCCHHHHHHHH
Confidence 99999985543
No 34
>PRK09381 trxA thioredoxin; Provisional
Probab=98.59 E-value=2.1e-07 Score=76.53 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=53.4
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhc---cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPV 336 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~---~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~ 336 (365)
-+..|.|+|||+|+.+++.+.+-+.+ ++ ..++|+.+ .+++++.+|+++||+++ +|+ ++.|..
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~ 95 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLLLFKNGEVAATKVGAL 95 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC--------hhHHHhCCCCcCCEEEEEeCCeEEEEecCCC
Confidence 35666699999999999999873211 12 35777642 46789999999999988 775 477888
Q ss_pred Chhhhhhhhh
Q 017869 337 RPRQGIWLSR 346 (365)
Q Consensus 337 ~l~~l~~~~~ 346 (365)
+.+++.++-+
T Consensus 96 ~~~~l~~~i~ 105 (109)
T PRK09381 96 SKGQLKEFLD 105 (109)
T ss_pred CHHHHHHHHH
Confidence 8888766544
No 35
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.59 E-value=2.2e-07 Score=76.52 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=48.6
Q ss_pred cceEEEccCCCHhHHHHHHHHhhHh--hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCCCh
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPVRP 338 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgkeA--~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~~l 338 (365)
.=+..|+|+||++|+.+++.+.+-+ ...+.++..|-|+ + ....+++++++|+++||.++ ||+ ++.|.. .
T Consensus 17 ~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~-~--~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~-~ 92 (103)
T cd02985 17 LVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDE-N--DSTMELCRREKIIEVPHFLFYKDGEKIHEEEGIG-P 92 (103)
T ss_pred EEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCC-C--hHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCCC-H
Confidence 3466677999999999999998732 2334443333322 1 11347899999999999887 785 467743 4
Q ss_pred hhhh
Q 017869 339 RQGI 342 (365)
Q Consensus 339 ~~l~ 342 (365)
++|.
T Consensus 93 ~~l~ 96 (103)
T cd02985 93 DELI 96 (103)
T ss_pred HHHH
Confidence 4443
No 36
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.59 E-value=8.3e-08 Score=74.73 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=53.6
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhc-cCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhhhhhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQGIWLSR 346 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~-~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~~~~~ 346 (365)
+.+|+++|||+|++.++.+.+.... ...+++.+.+.... +.+..+-+..|+..+|+..+||+...|..++.++.. .
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~-~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~--~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGS-EIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYK--S 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChH-HHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH--c
Confidence 4689999999999999999985311 14467776543111 112234455799999999999988877655555433 5
Q ss_pred hhhh
Q 017869 347 NESA 350 (365)
Q Consensus 347 ~e~~ 350 (365)
+|+.
T Consensus 78 g~l~ 81 (84)
T TIGR02180 78 GKLA 81 (84)
T ss_pred CChh
Confidence 5543
No 37
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.58 E-value=5.4e-06 Score=88.03 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=50.2
Q ss_pred ccceEEEccCCCHhHHHHHHH-Hhh----HhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEE---CCe----
Q 017869 265 AIGAKMYGAFWCSHCLEQKQM-FGS----EAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ---- 330 (365)
Q Consensus 265 ~~gak~YgApWCpHC~~qk~~-fgk----eA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i---nG~---- 330 (365)
+.=+..|+|+||++|+++++. |.+ ++.+++.. +|.+.+ + ++..+++++.+++++||..+ ||+
T Consensus 475 K~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~--~--~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~ 550 (571)
T PRK00293 475 KPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTAN--N--AEDVALLKHYNVLGLPTILFFDAQGQEIPD 550 (571)
T ss_pred CcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCC--C--hhhHHHHHHcCCCCCCEEEEECCCCCCccc
Confidence 334556779999999999875 322 12333444 455432 1 12468899999999999887 564
Q ss_pred -ecCCCCChhhhhh
Q 017869 331 -WRARPVRPRQGIW 343 (365)
Q Consensus 331 -~y~G~~~l~~l~~ 343 (365)
++.|..+.+++.+
T Consensus 551 ~r~~G~~~~~~f~~ 564 (571)
T PRK00293 551 ARVTGFMDAAAFAA 564 (571)
T ss_pred ccccCCCCHHHHHH
Confidence 3578888888744
No 38
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.58 E-value=1.5e-07 Score=97.47 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=53.3
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhc------cCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC----eecC-
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----QWRA- 333 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~------~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG----~~y~- 333 (365)
-+..|+|||||||+.+++.|.+-|.+ .+-.|+||.+. ....+++++|++|||.++ || ..|+
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~------~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~ 447 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ------KEFAKQELQLGSFPTILFFPKHSSRPIKYPS 447 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc------cHHHHHHcCCCccceEEEEECCCCCceeCCC
Confidence 35556699999999999999874321 12347887542 123357899999999887 55 3697
Q ss_pred CCCChhhhhhhhh
Q 017869 334 RPVRPRQGIWLSR 346 (365)
Q Consensus 334 G~~~l~~l~~~~~ 346 (365)
|.|++++|+.|.+
T Consensus 448 g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 448 EKRDVDSLMSFVN 460 (463)
T ss_pred CCCCHHHHHHHHH
Confidence 5899999977654
No 39
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.1e-07 Score=98.44 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=54.9
Q ss_pred HHhhhhcccceEEEccCCCHhHHHHHHHHhhH--hhccCc---eEEcCCCCCcCccccHHHHHhcCCceeeEEEE---CC
Q 017869 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE--AVKQLN---YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NG 329 (365)
Q Consensus 258 ~la~~L~~~gak~YgApWCpHC~~qk~~fgke--A~~~l~---yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i---nG 329 (365)
.++..-++-=...|+|||||||+++++.+++- +.++.+ .-.+|..- |. -....+++|||+.+ ++
T Consensus 378 ~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTa-Nd-------~~~~~~~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 378 DIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATA-ND-------VPSLKVDGFPTILFFPAGH 449 (493)
T ss_pred HHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccc-cc-------CccccccccceEEEecCCC
Confidence 34444444334445599999999999999883 334332 23344321 11 22358899999988 33
Q ss_pred ----eecCCCCChhhhhhhhhhhh
Q 017869 330 ----QWRARPVRPRQGIWLSRNES 349 (365)
Q Consensus 330 ----~~y~G~~~l~~l~~~~~~e~ 349 (365)
..|+|.|++++++.+.++..
T Consensus 450 k~~pv~y~g~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 450 KSNPVIYNGDRTLEDLKKFIKKSA 473 (493)
T ss_pred CCCCcccCCCcchHHHHhhhccCC
Confidence 35999999999988776654
No 40
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.55 E-value=3.4e-07 Score=70.21 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=53.1
Q ss_pred ccceEEEccCCCHhHHHHHHHHhhHhh--ccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCC
Q 017869 265 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARP 335 (365)
Q Consensus 265 ~~gak~YgApWCpHC~~qk~~fgkeA~--~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~ 335 (365)
+.-+.+|+++||++|+++++.+.+-+. .++.+ ++|+. ..+.+++.+++++||+++ +|+ .+.|.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 82 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE--------NPELAEEYGVRSIPTFLFFKNGKEVDRVVGA 82 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC--------ChhHHHhcCcccccEEEEEECCEEEEEEecC
Confidence 445788889999999999999987322 33444 55553 247899999999999998 674 57887
Q ss_pred CChhhhhh
Q 017869 336 VRPRQGIW 343 (365)
Q Consensus 336 ~~l~~l~~ 343 (365)
.+.+++..
T Consensus 83 ~~~~~l~~ 90 (93)
T cd02947 83 DPKEELEE 90 (93)
T ss_pred CCHHHHHH
Confidence 77777644
No 41
>PRK10996 thioredoxin 2; Provisional
Probab=98.54 E-value=4.7e-07 Score=78.87 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=51.8
Q ss_pred cceEEEccCCCHhHHHHHHHHhhHh---hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCCC
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPVR 337 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgkeA---~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~~ 337 (365)
.-+..|+|+||++|+++++.|.+-+ ..++.++..|.+. ..+++++++|+++||.++ ||+ ++.|..+
T Consensus 54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~------~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~ 127 (139)
T PRK10996 54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA------ERELSARFRIRSIPTIMIFKNGQVVDMLNGAVP 127 (139)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC------CHHHHHhcCCCccCEEEEEECCEEEEEEcCCCC
Confidence 3355666999999999999887732 1234444444332 358899999999999888 785 4789888
Q ss_pred hhhhhh
Q 017869 338 PRQGIW 343 (365)
Q Consensus 338 l~~l~~ 343 (365)
.+++..
T Consensus 128 ~e~l~~ 133 (139)
T PRK10996 128 KAPFDS 133 (139)
T ss_pred HHHHHH
Confidence 888744
No 42
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.54 E-value=3.3e-07 Score=75.20 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=45.8
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--hc--cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--VK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARP 335 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~~--~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~ 335 (365)
-+..|+|+|||||+.+.+.|.+-+ .. .+ ..+++| + .+.+++++|+++||+++ ||+ +..|.
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~ 90 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T--------IDTLKRYRGKCEPTFLFYKNGELVAVIRGA 90 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C--------HHHHHHcCCCcCcEEEEEECCEEEEEEecC
Confidence 355677999999999999997722 21 12 235554 1 26789999999999988 775 35664
Q ss_pred CChhhhh
Q 017869 336 VRPRQGI 342 (365)
Q Consensus 336 ~~l~~l~ 342 (365)
+.+++.
T Consensus 91 -~~~~~~ 96 (102)
T cd02948 91 -NAPLLN 96 (102)
T ss_pred -ChHHHH
Confidence 555553
No 43
>PLN02309 5'-adenylylsulfate reductase
Probab=98.54 E-value=2.5e-07 Score=95.71 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=55.3
Q ss_pred cccceEEEccCCCHhHHHHHHHHhhHhhc----cC--ceEEcCCCCCcCccccHHHHH-hcCCceeeEEEE--CC----e
Q 017869 264 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QL--NYVECFPDGYRKGTKIAKACS-DAKIEGFPTWVI--NG----Q 330 (365)
Q Consensus 264 ~~~gak~YgApWCpHC~~qk~~fgkeA~~----~l--~yVeC~~~~~~~~~~~~~~C~-~~~I~gyPTw~i--nG----~ 330 (365)
.+.-+.+|+||||+||+.+++.|.+-+.+ .+ ..|+|+.+ +.++|+ +++|++|||.++ +| .
T Consensus 365 ~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-------~~~la~~~~~I~~~PTil~f~~g~~~~v 437 (457)
T PLN02309 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-------QKEFAKQELQLGSFPTILLFPKNSSRPI 437 (457)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-------chHHHHhhCCCceeeEEEEEeCCCCCee
Confidence 34456667799999999999999884311 12 24666622 247786 589999999887 44 2
Q ss_pred ecCC-CCChhhhhhhhhh
Q 017869 331 WRAR-PVRPRQGIWLSRN 347 (365)
Q Consensus 331 ~y~G-~~~l~~l~~~~~~ 347 (365)
.|.| .|+.++|+.|.++
T Consensus 438 ~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 438 KYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred ecCCCCcCHHHHHHHHHH
Confidence 6875 6999999877654
No 44
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.54 E-value=4.1e-07 Score=73.70 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=52.8
Q ss_pred cceEEEccCCCHhHHHHHHHHhhHh--h-ccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCCC
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGSEA--V-KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPVR 337 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgkeA--~-~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~~ 337 (365)
.-+.+|.|+||++|+++++.+.+-+ . .++.+++.|.+. +.++..+.+|.++||..+ ||+ ++.|.++
T Consensus 15 ~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~------~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~ 88 (97)
T cd02949 15 LILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE------DQEIAEAAGIMGTPTVQFFKDKELVKEISGVKM 88 (97)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC------CHHHHHHCCCeeccEEEEEECCeEEEEEeCCcc
Confidence 3466778999999999999887621 1 234454444332 357899999999999888 674 5889999
Q ss_pred hhhhhh
Q 017869 338 PRQGIW 343 (365)
Q Consensus 338 l~~l~~ 343 (365)
.+++..
T Consensus 89 ~~~~~~ 94 (97)
T cd02949 89 KSEYRE 94 (97)
T ss_pred HHHHHH
Confidence 888754
No 45
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.51 E-value=2e-07 Score=80.03 Aligned_cols=73 Identities=5% Similarity=-0.073 Sum_probs=52.7
Q ss_pred cceEEEccCCCH--hHH--HHHHHHhhHhhcc-----Cc--eEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe--
Q 017869 266 IGAKMYGAFWCS--HCL--EQKQMFGSEAVKQ-----LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-- 330 (365)
Q Consensus 266 ~gak~YgApWCp--HC~--~qk~~fgkeA~~~-----l~--yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~-- 330 (365)
.=+.+|.|+||+ ||+ .+.+.+.+.|.+. +. .|||+. +.++|+++||+++||.++ ||+
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--------~~~La~~~~I~~iPTl~lfk~G~~v 100 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--------DAKVAKKLGLDEEDSIYVFKDDEVI 100 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--------CHHHHHHcCCccccEEEEEECCEEE
Confidence 447889888884 799 5565555544332 34 356653 359999999999999987 884
Q ss_pred ecCCCCChhhhhhhhh
Q 017869 331 WRARPVRPRQGIWLSR 346 (365)
Q Consensus 331 ~y~G~~~l~~l~~~~~ 346 (365)
.|.|.++.++++.+-+
T Consensus 101 ~~~G~~~~~~l~~~l~ 116 (120)
T cd03065 101 EYDGEFAADTLVEFLL 116 (120)
T ss_pred EeeCCCCHHHHHHHHH
Confidence 4899999999865443
No 46
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.51 E-value=2.2e-07 Score=93.44 Aligned_cols=70 Identities=21% Similarity=0.364 Sum_probs=52.4
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh--hc----cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe----ecC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA--VK----QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----WRA 333 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA--~~----~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~----~y~ 333 (365)
+.+|+|+||+||++.++.|.+.+ .+ ++ ..|+|+.+ .++|++.+|++|||+.+ +|+ +|.
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~ 93 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE--------KDLAQKYGVSGYPTLKIFRNGEDSVSDYN 93 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc--------HHHHHhCCCccccEEEEEeCCccceeEec
Confidence 45566999999999999987632 11 13 34777642 48899999999999887 554 589
Q ss_pred CCCChhhhhhhh
Q 017869 334 RPVRPRQGIWLS 345 (365)
Q Consensus 334 G~~~l~~l~~~~ 345 (365)
|.++.++++.+.
T Consensus 94 g~~~~~~l~~~i 105 (462)
T TIGR01130 94 GPRDADGIVKYM 105 (462)
T ss_pred CCCCHHHHHHHH
Confidence 999999875544
No 47
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.51 E-value=3.1e-07 Score=74.62 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=55.0
Q ss_pred hhcc-cceEEEccCCCHhHHHHHHHHhhHhh--ccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCe-ecCCCCC
Q 017869 262 HLHA-IGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-WRARPVR 337 (365)
Q Consensus 262 ~L~~-~gak~YgApWCpHC~~qk~~fgkeA~--~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~-~y~G~~~ 337 (365)
.|++ +.+++|.++|||+|...++.+++-+. .++.+...|-+. ..++..++||.+.||.++||+ .+.|..+
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~------~~e~a~~~~V~~vPt~vidG~~~~~G~~~ 82 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL------FQDEVEERGIMSVPAIFLNGELFGFGRMT 82 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh------CHHHHHHcCCccCCEEEECCEEEEeCCCC
Confidence 4433 47999999999999999999987331 235554444332 357899999999999999996 4678677
Q ss_pred hhhhh
Q 017869 338 PRQGI 342 (365)
Q Consensus 338 l~~l~ 342 (365)
.++++
T Consensus 83 ~~e~~ 87 (89)
T cd03026 83 LEEIL 87 (89)
T ss_pred HHHHh
Confidence 67654
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.50 E-value=3.5e-07 Score=71.79 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=52.5
Q ss_pred cceEEEccCCCHhHHHHHHHHhhHh--h---ccCc--eEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC----eec
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGSEA--V---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----QWR 332 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgkeA--~---~~l~--yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG----~~y 332 (365)
.-+.+|+++||++|+++++.|.+-+ . ..+. .|+|+. +.++|++.+|+++||..+ +| .+|
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~ 88 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--------NNDLCSEYGVRGYPTIKLFPNGSKEPVKY 88 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--------hHHHHHhCCCCCCCEEEEEcCCCcccccC
Confidence 3567788999999999999998732 2 2233 355553 358899999999999887 33 358
Q ss_pred CCCCChhhhhhh
Q 017869 333 ARPVRPRQGIWL 344 (365)
Q Consensus 333 ~G~~~l~~l~~~ 344 (365)
.|.++.+++.++
T Consensus 89 ~g~~~~~~i~~~ 100 (101)
T cd02961 89 EGPRTLESLVEF 100 (101)
T ss_pred CCCcCHHHHHhh
Confidence 899998887543
No 49
>PTZ00051 thioredoxin; Provisional
Probab=98.49 E-value=7.2e-07 Score=71.52 Aligned_cols=70 Identities=16% Similarity=0.309 Sum_probs=47.3
Q ss_pred ccceEEEccCCCHhHHHHHHHHhhHhh--ccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCCC
Q 017869 265 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPVR 337 (365)
Q Consensus 265 ~~gak~YgApWCpHC~~qk~~fgkeA~--~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~~ 337 (365)
+.-+.+|+|+||++|+++++.+.+-+. ..+.++..|.+. ..+++++.+|+++||.++ ||+ ++.|. .
T Consensus 19 ~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~ 91 (98)
T PTZ00051 19 ELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE------LSEVAEKENITSMPTFKVFKNGSVVDTLLGA-N 91 (98)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc------hHHHHHHCCCceeeEEEEEeCCeEEEEEeCC-C
Confidence 344567779999999999999987332 224443333221 357899999999999887 674 46664 4
Q ss_pred hhhh
Q 017869 338 PRQG 341 (365)
Q Consensus 338 l~~l 341 (365)
.+++
T Consensus 92 ~~~~ 95 (98)
T PTZ00051 92 DEAL 95 (98)
T ss_pred HHHh
Confidence 4444
No 50
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.48 E-value=4.3e-07 Score=74.12 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=50.4
Q ss_pred ccceEEEccCCCHhHHHHHHHHh---h--Hhhc-cCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEE-C---Ce--
Q 017869 265 AIGAKMYGAFWCSHCLEQKQMFG---S--EAVK-QLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI-N---GQ-- 330 (365)
Q Consensus 265 ~~gak~YgApWCpHC~~qk~~fg---k--eA~~-~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i-n---G~-- 330 (365)
+.-+.+|+|+||++|+++++.+. + +..+ ++.+ |+++.+. ....+++++.+|+++||..+ + |+
T Consensus 12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKND----PEITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCC----HHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 33466788999999999997652 2 1122 4444 4544321 11358899999999999887 3 43
Q ss_pred -ecCCCCChhhhhh
Q 017869 331 -WRARPVRPRQGIW 343 (365)
Q Consensus 331 -~y~G~~~l~~l~~ 343 (365)
++.|.++.+++..
T Consensus 88 ~~~~G~~~~~~l~~ 101 (104)
T cd02953 88 LRLPGFLTADEFLE 101 (104)
T ss_pred cccccccCHHHHHH
Confidence 4789899888754
No 51
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.48 E-value=1.4e-07 Score=77.53 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=47.6
Q ss_pred hcccceEEEccCCCHhHHHHHHHHhhH-h-hc----cCce--EEcCCCC-----------C-cCccccHHHHHhcCCcee
Q 017869 263 LHAIGAKMYGAFWCSHCLEQKQMFGSE-A-VK----QLNY--VECFPDG-----------Y-RKGTKIAKACSDAKIEGF 322 (365)
Q Consensus 263 L~~~gak~YgApWCpHC~~qk~~fgke-A-~~----~l~y--VeC~~~~-----------~-~~~~~~~~~C~~~~I~gy 322 (365)
-.+.-+.+|++||||+|+++++...+. + .. ++.. ++++.+. . +-...+.++.+..||+|+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 344557888899999999998777641 1 11 2332 3333211 0 000124578889999999
Q ss_pred eEEEE---CCe---ecCCCCChhhhhh
Q 017869 323 PTWVI---NGQ---WRARPVRPRQGIW 343 (365)
Q Consensus 323 PTw~i---nG~---~y~G~~~l~~l~~ 343 (365)
||+++ +|+ ++.|-.+.+++..
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~ 110 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLK 110 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHh
Confidence 99998 476 6899999998754
No 52
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.46 E-value=3.5e-07 Score=76.98 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=49.4
Q ss_pred EEEccCCCHhHHHHHHHHhhHhh--ccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC-----eecCCCCChh
Q 017869 269 KMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-----QWRARPVRPR 339 (365)
Q Consensus 269 k~YgApWCpHC~~qk~~fgkeA~--~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG-----~~y~G~~~l~ 339 (365)
.+|+|+|||+|+.+++.+.+-+. .++.++..|-|. .+++..+++|++.||.++ || .++.|..+-+
T Consensus 27 v~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~------~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~ 100 (113)
T cd02975 27 VFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE------DKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGY 100 (113)
T ss_pred EEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc------CHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchH
Confidence 45589999999999999987432 234444444332 358899999999999998 32 2577877777
Q ss_pred hhhhh
Q 017869 340 QGIWL 344 (365)
Q Consensus 340 ~l~~~ 344 (365)
++..+
T Consensus 101 el~~~ 105 (113)
T cd02975 101 EFASL 105 (113)
T ss_pred HHHHH
Confidence 76543
No 53
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.46 E-value=7e-07 Score=75.36 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=55.9
Q ss_pred hHHHhhhhc-ccceEEEccCCCHhHHHHHHHHhh------HhhccCceEEcCCCCCcC-------ccccHHHHHhcCCce
Q 017869 256 ALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGS------EAVKQLNYVECFPDGYRK-------GTKIAKACSDAKIEG 321 (365)
Q Consensus 256 ~~~la~~L~-~~gak~YgApWCpHC~~qk~~fgk------eA~~~l~yVeC~~~~~~~-------~~~~~~~C~~~~I~g 321 (365)
+++-|+.-. +.=+.+|+|+|||||+++++.+.+ ...+++..+..+.+...+ .....+++.+.+|++
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 345555555 556778889999999999976631 111234344443322100 011357899999999
Q ss_pred eeEEEE---C-Ce---ecCCCCChhhhhh
Q 017869 322 FPTWVI---N-GQ---WRARPVRPRQGIW 343 (365)
Q Consensus 322 yPTw~i---n-G~---~y~G~~~l~~l~~ 343 (365)
+||.++ + |+ ++.|..+.+++..
T Consensus 85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~ 113 (125)
T cd02951 85 TPTVIFLDPEGGKEIARLPGYLPPDEFLA 113 (125)
T ss_pred ccEEEEEcCCCCceeEEecCCCCHHHHHH
Confidence 999887 4 44 5788888777643
No 54
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.46 E-value=3.2e-07 Score=78.31 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=51.5
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhc---cCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCCCh
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPVRP 338 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~---~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~~l 338 (365)
=+..|+|+|||+|+.+++.+++-+.+ .+.++.+|-|. .+++.++++|++.||+++ ||+ +..|.-+-
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~------~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~~ 90 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE------VPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGNN 90 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC------CHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCCC
Confidence 35667799999999999999884322 23334444332 358899999999999988 885 46677777
Q ss_pred hhhhh
Q 017869 339 RQGIW 343 (365)
Q Consensus 339 ~~l~~ 343 (365)
.++.|
T Consensus 91 ~~~~~ 95 (114)
T cd02954 91 NKINW 95 (114)
T ss_pred ceEEE
Confidence 77655
No 55
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.46 E-value=4.3e-07 Score=71.25 Aligned_cols=66 Identities=9% Similarity=0.184 Sum_probs=45.2
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhc---cCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCee-cCCCC-Chhhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQW-RARPV-RPRQGI 342 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~---~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~-y~G~~-~l~~l~ 342 (365)
+.|| |+|||+|+.+++.+.+-+.+ ++..++.+. .+.+.+.|+.+.||.++||+. +.|.+ +.+++.
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---------~~~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~ 72 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEELGIDAEFEKVTD---------MNEILEAGVTATPGVAVDGELVIMGKIPSKEEIK 72 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---------HHHHHHcCCCcCCEEEECCEEEEEeccCCHHHHH
Confidence 6788 69999999999988873221 123344431 244788999999999999954 66753 335554
Q ss_pred h
Q 017869 343 W 343 (365)
Q Consensus 343 ~ 343 (365)
.
T Consensus 73 ~ 73 (76)
T TIGR00412 73 E 73 (76)
T ss_pred H
Confidence 3
No 56
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.45 E-value=6.2e-07 Score=71.63 Aligned_cols=68 Identities=19% Similarity=0.363 Sum_probs=47.8
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhc---cCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCCChh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPVRPR 339 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~---~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~~l~ 339 (365)
+.+|+|+||++|+++++.+.+-+.+ ++.++.+|.+. ..+++.+.+|+++||+++ ||+ ++.|. +.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~ 90 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE------LPEISEKFEITAVPTFVFFRNGTIVDRVSGA-DPK 90 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc------CHHHHHhcCCccccEEEEEECCEEEEEEeCC-CHH
Confidence 4566699999999999999874322 34455555332 357899999999999888 775 35564 444
Q ss_pred hhh
Q 017869 340 QGI 342 (365)
Q Consensus 340 ~l~ 342 (365)
++.
T Consensus 91 ~l~ 93 (97)
T cd02984 91 ELA 93 (97)
T ss_pred HHH
Confidence 443
No 57
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.44 E-value=5e-07 Score=83.97 Aligned_cols=80 Identities=13% Similarity=-0.011 Sum_probs=57.5
Q ss_pred HHhhhhcccceEEEccCCCHhHHHHHHHHhhHhhc--cCceEEcCCCCCcCccccHHHHHhcCCceeeEEEEC--CeecC
Q 017869 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN--GQWRA 333 (365)
Q Consensus 258 ~la~~L~~~gak~YgApWCpHC~~qk~~fgkeA~~--~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~in--G~~y~ 333 (365)
.+.+.-+.+.+.+|+|+|||||+..++.+.+-+.. ++.....|.+. ..+++.++||+++||.+++ |+++.
T Consensus 127 ~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~------~~~~~~~~~V~~vPtl~i~~~~~~~~ 200 (215)
T TIGR02187 127 LLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE------NPDLAEKYGVMSVPKIVINKGVEEFV 200 (215)
T ss_pred HHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC------CHHHHHHhCCccCCEEEEecCCEEEE
Confidence 33343445567878899999999999888773322 34444455442 3578999999999999995 45599
Q ss_pred CCCChhhhhh
Q 017869 334 RPVRPRQGIW 343 (365)
Q Consensus 334 G~~~l~~l~~ 343 (365)
|..+.++++.
T Consensus 201 G~~~~~~l~~ 210 (215)
T TIGR02187 201 GAYPEEQFLE 210 (215)
T ss_pred CCCCHHHHHH
Confidence 9999888754
No 58
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.44 E-value=7.1e-07 Score=78.15 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=52.5
Q ss_pred cccceEEEccCCCHhHHHHHHHHhhHh--h-ccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEE---CCe---ec
Q 017869 264 HAIGAKMYGAFWCSHCLEQKQMFGSEA--V-KQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ---WR 332 (365)
Q Consensus 264 ~~~gak~YgApWCpHC~~qk~~fgkeA--~-~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i---nG~---~y 332 (365)
.+.-+..|+|+||++|+.+++.+.+-+ + .++.+ |+.+.+. ..+.+++++|+++||+++ ||+ ++
T Consensus 20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~------~~~~~~~~~V~~iPt~v~~~~~G~~v~~~ 93 (142)
T cd02950 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK------WLPEIDRYRVDGIPHFVFLDREGNEEGQS 93 (142)
T ss_pred CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc------cHHHHHHcCCCCCCEEEEECCCCCEEEEE
Confidence 344466677999999999999998732 1 22333 4444321 246789999999999887 464 57
Q ss_pred CCCCChhhhhhh
Q 017869 333 ARPVRPRQGIWL 344 (365)
Q Consensus 333 ~G~~~l~~l~~~ 344 (365)
.|..+.+++..+
T Consensus 94 ~G~~~~~~l~~~ 105 (142)
T cd02950 94 IGLQPKQVLAQN 105 (142)
T ss_pred eCCCCHHHHHHH
Confidence 898888876543
No 59
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.38 E-value=1.1e-06 Score=69.83 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=51.2
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--hc-cCc--eEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--VK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPV 336 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~~-~l~--yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~ 336 (365)
=+.+|+++||++|+++.+.+.+-+ .. ++. .|+|+. ..+++++.+|+++||+++ +|+ .+.|.+
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--------~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~ 88 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE--------NPDIAAKYGIRSIPTLLLFKNGKEVDRSVGAL 88 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC--------CHHHHHHcCCCcCCEEEEEeCCcEeeeecCCC
Confidence 355666999999999999987722 22 344 366653 247899999999999888 664 577888
Q ss_pred Chhhhhhh
Q 017869 337 RPRQGIWL 344 (365)
Q Consensus 337 ~l~~l~~~ 344 (365)
+.+++..+
T Consensus 89 ~~~~l~~~ 96 (101)
T TIGR01068 89 PKAALKQL 96 (101)
T ss_pred CHHHHHHH
Confidence 88887443
No 60
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.35 E-value=1e-06 Score=81.89 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=55.2
Q ss_pred hcccceEEEcc---CCCHhHHHHHHHHhhHhh--ccC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC----
Q 017869 263 LHAIGAKMYGA---FWCSHCLEQKQMFGSEAV--KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG---- 329 (365)
Q Consensus 263 L~~~gak~YgA---pWCpHC~~qk~~fgkeA~--~~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG---- 329 (365)
-+.+.+++|.+ +|||||+.+++.+++-+. .++ ..+++|.+. ..+++++++|+++||.++ ||
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~------~~~l~~~~~V~~~Pt~~~f~~g~~~~ 91 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE------DKEEAEKYGVERVPTTIILEEGKDGG 91 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc------cHHHHHHcCCCccCEEEEEeCCeeeE
Confidence 34556778877 999999999999987432 222 246665432 468999999999999988 54
Q ss_pred eecCCCCChhhhhh
Q 017869 330 QWRARPVRPRQGIW 343 (365)
Q Consensus 330 ~~y~G~~~l~~l~~ 343 (365)
.++.|..+.+++..
T Consensus 92 ~~~~G~~~~~~l~~ 105 (215)
T TIGR02187 92 IRYTGIPAGYEFAA 105 (215)
T ss_pred EEEeecCCHHHHHH
Confidence 36789988887644
No 61
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=5e-07 Score=94.31 Aligned_cols=62 Identities=29% Similarity=0.623 Sum_probs=47.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh-----hcc---CceEEcCCCCCcCccccHHHHHhcCCceeeEEEE------C---Ce
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA-----VKQ---LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI------N---GQ 330 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA-----~~~---l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i------n---G~ 330 (365)
+.|| |.|||||.+-++.|.+-| +.. +.-|||..+. | .++|++++|++|||..+ | |+
T Consensus 62 VEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N-----~~lCRef~V~~~Ptlryf~~~~~~~~~G~ 134 (606)
T KOG1731|consen 62 VEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-N-----VKLCREFSVSGYPTLRYFPPDSQNKTDGS 134 (606)
T ss_pred HHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-h-----hhhHhhcCCCCCceeeecCCccccCcCCC
Confidence 4556 999999999999999843 222 3459998543 3 48999999999999998 3 67
Q ss_pred ecCCCC
Q 017869 331 WRARPV 336 (365)
Q Consensus 331 ~y~G~~ 336 (365)
.++|..
T Consensus 135 ~~~~~~ 140 (606)
T KOG1731|consen 135 DVSGPV 140 (606)
T ss_pred cccCCc
Confidence 777744
No 62
>PHA03050 glutaredoxin; Provisional
Probab=98.33 E-value=1.1e-06 Score=74.00 Aligned_cols=90 Identities=8% Similarity=-0.039 Sum_probs=59.2
Q ss_pred HhhhhcccceEEEccCCCHhHHHHHHHHhhHhhc--cCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCC
Q 017869 259 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPV 336 (365)
Q Consensus 259 la~~L~~~gak~YgApWCpHC~~qk~~fgkeA~~--~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~ 336 (365)
+-+.+++..+++|+.+|||||++.|.++.+.... ...++|.+..+.+ .+.+..+=+..|-+..|+..|||+..-|-.
T Consensus 6 v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~-~~~~~~l~~~tG~~tVP~IfI~g~~iGG~d 84 (108)
T PHA03050 6 VQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPE-NELRDYFEQITGGRTVPRIFFGKTSIGGYS 84 (108)
T ss_pred HHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCC-HHHHHHHHHHcCCCCcCEEEECCEEEeChH
Confidence 4455667789999999999999999999873211 1223555532111 112334444468889999999999888877
Q ss_pred Chhhhhhhhhhhhhh
Q 017869 337 RPRQGIWLSRNESAQ 351 (365)
Q Consensus 337 ~l~~l~~~~~~e~~~ 351 (365)
++.+|-. .+|+..
T Consensus 85 dl~~l~~--~g~L~~ 97 (108)
T PHA03050 85 DLLEIDN--MDALGD 97 (108)
T ss_pred HHHHHHH--cCCHHH
Confidence 7766543 334443
No 63
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.33 E-value=1.6e-06 Score=74.26 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=51.1
Q ss_pred cccceEEEccCCCHhHHHHHHHHhhHhh-cc--CceEEcCCCCCcCcc---ccHHHHHhc----CCceeeEEEE--CCe-
Q 017869 264 HAIGAKMYGAFWCSHCLEQKQMFGSEAV-KQ--LNYVECFPDGYRKGT---KIAKACSDA----KIEGFPTWVI--NGQ- 330 (365)
Q Consensus 264 ~~~gak~YgApWCpHC~~qk~~fgkeA~-~~--l~yVeC~~~~~~~~~---~~~~~C~~~----~I~gyPTw~i--nG~- 330 (365)
.+..+.+||++|||+|+..+|.+.+.+. .+ +-||+.+.++..... ...+..++. +|.+.||.++ ||+
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 3446899999999999999999987321 12 346777654311111 112344444 5667999988 885
Q ss_pred --ecCCC-CChhhhhhh
Q 017869 331 --WRARP-VRPRQGIWL 344 (365)
Q Consensus 331 --~y~G~-~~l~~l~~~ 344 (365)
+..|. .+.++|..|
T Consensus 103 v~~~~G~~~~~~~l~~~ 119 (122)
T TIGR01295 103 VSVRCGSSTTAQELQDI 119 (122)
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 45664 456666543
No 64
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.32 E-value=7.9e-07 Score=74.29 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=44.8
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh--hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCee---cCCCCCh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQW---RARPVRP 338 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA--~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~~---y~G~~~l 338 (365)
+..|+||||++|+.+++.+.+-+ ...+.++..|.+. . +++++.+|+++||.++ ||+. +.|..++
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~------~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK------A-FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh------h-HHHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence 45566999999999999998733 2234444444321 3 7799999999999887 8854 4554433
No 65
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.32 E-value=4.6e-06 Score=74.40 Aligned_cols=59 Identities=14% Similarity=0.348 Sum_probs=43.6
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhh--c--cCc--eEEcCCCCCcCccccHHHHHhcCCce------eeEEEE--CCee--
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAV--K--QLN--YVECFPDGYRKGTKIAKACSDAKIEG------FPTWVI--NGQW-- 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~--~--~l~--yVeC~~~~~~~~~~~~~~C~~~~I~g------yPTw~i--nG~~-- 331 (365)
+..|+|+|||+|+++++.|.+-+. + ++. .|+|+. +.++|++++|++ +||.++ ||+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--------~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--------FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--------CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 667779999999999999987331 1 243 366653 348899999988 999887 7753
Q ss_pred -cCC
Q 017869 332 -RAR 334 (365)
Q Consensus 332 -y~G 334 (365)
++|
T Consensus 123 r~~G 126 (152)
T cd02962 123 RRPY 126 (152)
T ss_pred EEec
Confidence 555
No 66
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=9.1e-07 Score=89.02 Aligned_cols=86 Identities=21% Similarity=0.303 Sum_probs=62.2
Q ss_pred HHhhhhcccceEEEccCCCHhHHHHHHHHhhHh--hc-cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC-
Q 017869 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK-QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG- 329 (365)
Q Consensus 258 ~la~~L~~~gak~YgApWCpHC~~qk~~fgkeA--~~-~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG- 329 (365)
.....-.+..+.+|.||||+||+++.+.|.+-+ .. ++ .-|+|+. +.++|++.+|+||||..+ +|
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~--------~~~~~~~y~i~gfPtl~~f~~~~ 112 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE--------HKDLCEKYGIQGFPTLKVFRPGK 112 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh--------hHHHHHhcCCccCcEEEEEcCCC
Confidence 334444555677777999999999999999732 11 12 2355653 358999999999999988 44
Q ss_pred --eecCCCCChhhhhhhhhhhhhh
Q 017869 330 --QWRARPVRPRQGIWLSRNESAQ 351 (365)
Q Consensus 330 --~~y~G~~~l~~l~~~~~~e~~~ 351 (365)
..|.|.++.+++..+..+|...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 113 KPIDYSGPRNAESLAEFLIKELEP 136 (383)
T ss_pred ceeeccCcccHHHHHHHHHHhhcc
Confidence 3589999999987776666543
No 67
>PTZ00102 disulphide isomerase; Provisional
Probab=98.31 E-value=1.2e-06 Score=89.28 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=53.2
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--hcc-----CceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC-e---ecC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--VKQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---WRA 333 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~~~-----l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG-~---~y~ 333 (365)
=+.+|+|+||+||+++++.|.+-+ .+. +..++|+.+ ...|++.++++|||..+ +| + +|.
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~--------~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~ 449 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN--------ETPLEEFSWSAFPTILFVKAGERTPIPYE 449 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC--------ccchhcCCCcccCeEEEEECCCcceeEec
Confidence 455666999999999999998732 111 234777643 25588999999999887 33 2 589
Q ss_pred CCCChhhhhhhhhh
Q 017869 334 RPVRPRQGIWLSRN 347 (365)
Q Consensus 334 G~~~l~~l~~~~~~ 347 (365)
|.++.+++..+-+.
T Consensus 450 G~~~~~~l~~~i~~ 463 (477)
T PTZ00102 450 GERTVEGFKEFVNK 463 (477)
T ss_pred CcCCHHHHHHHHHH
Confidence 99999998665444
No 68
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.29 E-value=1.3e-06 Score=68.81 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=49.7
Q ss_pred cceEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhh
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQ 340 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~ 340 (365)
..+++|+.+|||+|++.|+.+.+. .++| ++.+.+. . ..++-...|.+.+|...+||+...|-.++.+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~---gi~y~~idi~~~~--~---~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~ 76 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK---GYDFEEIPLGNDA--R---GRSLRAVTGATTVPQVFIGGKLIGGSDELEA 76 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc---CCCcEEEECCCCh--H---HHHHHHHHCCCCcCeEEECCEEEcCHHHHHH
Confidence 458999999999999999999863 4665 5554331 1 1244455789999999999988877765554
No 69
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.29 E-value=2.5e-06 Score=63.81 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=46.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQG 341 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l 341 (365)
+++|+++|||+|+++++.+.+. .++|.+.+-+.. . ....+..+-++..++|+++++|+...|.. .+++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---~i~~~~~~i~~~-~-~~~~~~~~~~~~~~vP~i~~~~~~i~g~~-~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---GIPFEEVDVDED-P-EALEELKKLNGYRSVPVVVIGDEHLSGFR-PDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---CCCeEEEeCCCC-H-HHHHHHHHHcCCcccCEEEECCEEEecCC-HHHH
Confidence 6899999999999999999762 456544433221 1 11233444468999999999998887753 3344
No 70
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.28 E-value=1.4e-06 Score=71.97 Aligned_cols=86 Identities=8% Similarity=-0.041 Sum_probs=57.6
Q ss_pred hhcccceEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhh
Q 017869 262 HLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQG 341 (365)
Q Consensus 262 ~L~~~gak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l 341 (365)
..++..+.+|+.+|||||+++|+++.+. .....++|.+.+.... +.+..+-+..|-+.+|...|||+...|-.++.++
T Consensus 4 ~i~~~~Vvvysk~~Cp~C~~ak~~L~~~-~i~~~~vdid~~~~~~-~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 4 MVSEKAVVIFSRSSCCMCHVVKRLLLTL-GVNPAVHEIDKEPAGK-DIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred hhccCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEEcCCCccHH-HHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 3455679999999999999999999873 2223457776432111 1122333335788999999999998888777775
Q ss_pred hhhhhhhhhh
Q 017869 342 IWLSRNESAQ 351 (365)
Q Consensus 342 ~~~~~~e~~~ 351 (365)
-. .+|++.
T Consensus 82 ~~--~G~L~~ 89 (99)
T TIGR02189 82 HI--SGSLVP 89 (99)
T ss_pred HH--cCCHHH
Confidence 43 444443
No 71
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.28 E-value=2.9e-06 Score=71.43 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=41.8
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh--hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 330 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA--~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~ 330 (365)
+..|+|+|||+|+.+++.+.+-+ ...+.++..|.+. +.++.++++|++.||.++ ||+
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~------~~~l~~~~~v~~vPt~l~fk~G~ 86 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK------APFLVEKLNIKVLPTVILFKNGK 86 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc------CHHHHHHCCCccCCEEEEEECCE
Confidence 45566999999999999998732 2234454444332 357899999999999987 785
No 72
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.26 E-value=2e-06 Score=73.14 Aligned_cols=68 Identities=7% Similarity=-0.063 Sum_probs=52.2
Q ss_pred eEEEccCC--CHhHHHHHHHHhhHhhc---cCc--eEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCC
Q 017869 268 AKMYGAFW--CSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARP 335 (365)
Q Consensus 268 ak~YgApW--CpHC~~qk~~fgkeA~~---~l~--yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~ 335 (365)
+.+|+|.| ||+|.++++.+.+-+.+ ++. .|+++. +.+++.+++|++.||.++ ||+ ++.|.
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--------~~~la~~f~V~sIPTli~fkdGk~v~~~~G~ 102 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--------EQALAARFGVLRTPALLFFRDGRYVGVLAGI 102 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--------CHHHHHHcCCCcCCEEEEEECCEEEEEEeCc
Confidence 78888997 99999999999873321 233 345542 348899999999999988 885 46898
Q ss_pred CChhhhhh
Q 017869 336 VRPRQGIW 343 (365)
Q Consensus 336 ~~l~~l~~ 343 (365)
++.+++++
T Consensus 103 ~~~~e~~~ 110 (111)
T cd02965 103 RDWDEYVA 110 (111)
T ss_pred cCHHHHhh
Confidence 88888753
No 73
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.23 E-value=1.9e-06 Score=68.51 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=49.5
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhh--ccCceEEcCCCCCcCccccHHHHH--hcCCceeeEEEECCeecCCCCChhhhh
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACS--DAKIEGFPTWVINGQWRARPVRPRQGI 342 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~--~~l~yVeC~~~~~~~~~~~~~~C~--~~~I~gyPTw~inG~~y~G~~~l~~l~ 342 (365)
.+++|+.+|||+|+++++.+.+.+. ..++|.+.|-+.... ...++-. ..+.+.+|+..+||+...|-.++.++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~--~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGI--SKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChH--HHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHH
Confidence 4789999999999999999987322 356775555432110 0112222 234689999999999887776666643
No 74
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.21 E-value=2.6e-06 Score=66.20 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=50.3
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQGI 342 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~ 342 (365)
+.+|+++|||+|++.++.+.+.. ....+++.+.+...+ +.+..+-+..|...+|+..+||+..-|-.++.++.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~-~~~~~~~v~~~~~~~-~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~ 74 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELG-VKPAVVELDQHEDGS-EIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALH 74 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcC-CCcEEEEEeCCCChH-HHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 68999999999999999999842 234456766543211 11122334468999999999998876666665543
No 75
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.21 E-value=2.2e-06 Score=66.79 Aligned_cols=76 Identities=11% Similarity=0.061 Sum_probs=53.7
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhhhhhhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQGIWLSRN 347 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~~~~~~ 347 (365)
+++|+.+|||+|+++++.+.+. .-...+++.+.+. ..+.++-+..|...+|+..+||+..-|-.++.++.. ++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-~i~~~~~di~~~~----~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~--~g 73 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-GVTFTEIRVDGDP----ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDR--EG 73 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-CCCcEEEEecCCH----HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHH--cC
Confidence 5799999999999999999873 2223346665432 112344444688999999999998888888777655 55
Q ss_pred hhh
Q 017869 348 ESA 350 (365)
Q Consensus 348 e~~ 350 (365)
|.+
T Consensus 74 ~l~ 76 (79)
T TIGR02181 74 KLD 76 (79)
T ss_pred Chh
Confidence 543
No 76
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.18 E-value=3.5e-06 Score=64.96 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=50.4
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhhhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQGIWL 344 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~~~ 344 (365)
+++|+.++||+|++.++.+.+. .++|.+.+-+... ...+...+.|....|+.++||+..=|..+.+++.++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~---~i~~~~~di~~~~---~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH---GIAFEEINIDEQP---EAIDYVKAQGFRQVPVIVADGDLSWSGFRPDKLKAL 71 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC---CCceEEEECCCCH---HHHHHHHHcCCcccCEEEECCCcEEeccCHHHHHhc
Confidence 5799999999999999999863 5666444332211 133456667999999999988655555777776543
No 77
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.16 E-value=5.2e-06 Score=63.34 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=41.6
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHh-cCCceeeEEEECCeecCCCCChhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVINGQWRARPVRPRQG 341 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~-~~I~gyPTw~inG~~y~G~~~l~~l 341 (365)
+++|+++|||+|++.++.+.+. ......++.+.+. . .....-.. .++.+.|+.+++|...-..-+.+++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-~~~~~~idi~~~~--~--~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~ 71 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-GAAYEWVDIEEDE--G--AADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQV 71 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-CCceEEEeCcCCH--h--HHHHHHHHhCCCceeCEEEECCCeEecCCCHHHH
Confidence 6899999999999999999863 2223345554321 1 01122222 3899999998844233224444443
No 78
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.12 E-value=4e-06 Score=67.25 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=48.4
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhc--cCceEEcCCCCCcCccccHHHHHhcC--CceeeEEEECCeecCCCCChhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVINGQWRARPVRPRQG 341 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~--~l~yVeC~~~~~~~~~~~~~~C~~~~--I~gyPTw~inG~~y~G~~~l~~l 341 (365)
+++|+.+|||||+++|+++.+...+ .++|.+.+-++... . ..++-+..| .+..|+..+||+..-|-.++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~-~-~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~ 77 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGI-S-KADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQL 77 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHH-H-HHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHH
Confidence 6899999999999999999874222 35676655432111 0 122222333 47999999999888777666665
No 79
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.6e-06 Score=85.70 Aligned_cols=76 Identities=13% Similarity=0.237 Sum_probs=54.7
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhh-----ccC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--C----CeecCC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAV-----KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N----GQWRAR 334 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~-----~~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--n----G~~y~G 334 (365)
..+|+||||+||++++++|.+-+. ..+ ..++|+. ....|.+.+|++|||.++ + .+.|+|
T Consensus 166 lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~--------~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~ 237 (383)
T KOG0191|consen 166 LVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV--------HKSLASRLEVRGYPTLKLFPPGEEDIYYYSG 237 (383)
T ss_pred EEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch--------HHHHhhhhcccCCceEEEecCCCcccccccc
Confidence 444459999999999999988431 111 2355541 357899999999999987 2 246899
Q ss_pred CCChhhhhhhhhhhhhh
Q 017869 335 PVRPRQGIWLSRNESAQ 351 (365)
Q Consensus 335 ~~~l~~l~~~~~~e~~~ 351 (365)
.|+.++++.+..++..+
T Consensus 238 ~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 238 LRDSDSIVSFVEKKERR 254 (383)
T ss_pred cccHHHHHHHHHhhcCC
Confidence 99999986655555444
No 80
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.10 E-value=5.7e-06 Score=61.35 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=49.3
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQG 341 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l 341 (365)
+++|+++|||+|++.++.+.+. .++|.+.+-+... +....+-+..+...+|+..+||+...|..++.++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~---~i~~~~~di~~~~--~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL---GIEFEEIDILEDG--ELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---CCcEEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 6899999999999999999973 3666555433211 1123444457889999999999888877665554
No 81
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.10 E-value=3.2e-06 Score=82.82 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=58.7
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhh---ccC-------ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC----ee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAV---KQL-------NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----QW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~---~~l-------~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG----~~ 331 (365)
+-|| |.||++-+.+++.|++.|. ++. ..|||+. +..+..++.|+-|||..+ || +.
T Consensus 18 v~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~--------e~~ia~ky~I~KyPTlKvfrnG~~~~rE 88 (375)
T KOG0912|consen 18 VNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK--------EDDIADKYHINKYPTLKVFRNGEMMKRE 88 (375)
T ss_pred eeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch--------hhHHhhhhccccCceeeeeeccchhhhh
Confidence 4566 9999999999999997431 122 3699985 458899999999999998 88 46
Q ss_pred cCCCCChhhhhhhhhhhh
Q 017869 332 RARPVRPRQGIWLSRNES 349 (365)
Q Consensus 332 y~G~~~l~~l~~~~~~e~ 349 (365)
|.|.|++|.|..+.+++.
T Consensus 89 YRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 89 YRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hccchhHHHHHHHHHHHh
Confidence 999999999988776654
No 82
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.09 E-value=4.9e-06 Score=64.15 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=50.3
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQGI 342 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~ 342 (365)
+++|+.+|||+|+++++.+.+. .++| +|.+.+. ....++-+..+-..+|+..+||+...|-.++.+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---gi~~~~~di~~~~----~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---GLPYVEINIDIFP----ERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---CCceEEEECCCCH----HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 7899999999999999999973 4665 5554321 12344555567789999999998888877776653
No 83
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.09 E-value=7.7e-06 Score=62.67 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=48.8
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCc-eeeEEEECCeecCCCCChhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE-GFPTWVINGQWRARPVRPRQG 341 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~-gyPTw~inG~~y~G~~~l~~l 341 (365)
+++|+.+|||+|++.+..+.+. .++|.+.+-+.. . +.+.++-+..|.. .+|+..+||+..-|-.++.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---~i~~~~i~i~~~-~-~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~ 71 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---GVDYEEIDVDGD-P-ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYAL 71 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---CCcEEEEECCCC-H-HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHH
Confidence 7899999999999999999863 566644443321 1 1123333445766 999999999988777776664
No 84
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=9.5e-06 Score=64.67 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=53.6
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhc-CCceeeEEEECCeecCCCCChhhhhh
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA-KIEGFPTWVINGQWRARPVRPRQGIW 343 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~-~I~gyPTw~inG~~y~G~~~l~~l~~ 343 (365)
.+.+|+-+|||||++.|+++.+ +.++|.+.+.+.... +...+.-++. |.+..|...|||+..-|..+++++..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~---~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDR---KGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHH---cCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHh
Confidence 4789999999999999999986 356776655433221 1122444444 89999999999998888888888754
No 85
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.07 E-value=5.3e-06 Score=61.56 Aligned_cols=57 Identities=18% Similarity=0.342 Sum_probs=42.0
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~ 331 (365)
+++|+.+|||+|++.++.+.+. .++| +|.+.+. +.+.++-+..|...+|+..+||+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~---~i~y~~~dv~~~~----~~~~~l~~~~g~~~~P~v~i~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK---GIPYEEVDVDEDE----EAREELKELSGVRTVPQVFIDGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT---TBEEEEEEGGGSH----HHHHHHHHHHSSSSSSEEEETTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc---CCeeeEcccccch----hHHHHHHHHcCCCccCEEEECCEE
Confidence 5799999999999999999763 4555 6665442 113344444599999999999974
No 86
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.04 E-value=1e-05 Score=66.60 Aligned_cols=80 Identities=6% Similarity=-0.025 Sum_probs=57.8
Q ss_pred HHhhhhcccceEEEc-----cCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeec
Q 017869 258 SLAKHLHAIGAKMYG-----AFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWR 332 (365)
Q Consensus 258 ~la~~L~~~gak~Yg-----ApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y 332 (365)
.+.+-+++..+.+|. +||||||++.|+++.+. .++|.+.|-+.. ...+..+.+..|-+.+|...|||+..
T Consensus 4 ~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---~i~~~~~di~~~--~~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 4 RIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC---GVPFAYVNVLED--PEIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred HHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc---CCCEEEEECCCC--HHHHHHHHHHhCCCCCCEEEECCEEE
Confidence 345566777899994 39999999999999863 567755554321 12244555667888999999999988
Q ss_pred CCCCChhhhh
Q 017869 333 ARPVRPRQGI 342 (365)
Q Consensus 333 ~G~~~l~~l~ 342 (365)
-|-.++.++-
T Consensus 79 GG~ddl~~l~ 88 (97)
T TIGR00365 79 GGCDIIMEMY 88 (97)
T ss_pred eChHHHHHHH
Confidence 8877777654
No 87
>PRK10638 glutaredoxin 3; Provisional
Probab=98.02 E-value=1e-05 Score=64.14 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=53.2
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhhhhh
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQGIWL 344 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~~~ 344 (365)
.+++|+.+|||+|++.+..+.+. .++| +|.+.+. ..+.++-+..|...+|+..+||+..-|-.++..+..
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~---gi~y~~~dv~~~~----~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~- 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSK---GVSFQEIPIDGDA----AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA- 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHc---CCCcEEEECCCCH----HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH-
Confidence 48899999999999999999973 5666 5554321 123344556788999999999988877655554432
Q ss_pred hhhhhh
Q 017869 345 SRNESA 350 (365)
Q Consensus 345 ~~~e~~ 350 (365)
++|++
T Consensus 75 -~g~l~ 79 (83)
T PRK10638 75 -RGGLD 79 (83)
T ss_pred -cCCHH
Confidence 55554
No 88
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.99 E-value=1.3e-05 Score=61.57 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=46.7
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhh
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQ 340 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~ 340 (365)
.+++|+.+|||+|++.++.+.+. .++| ++.+.+. . ...+=...|...+|...+||+...|..++.+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~---~i~~~~~~v~~~~--~---~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~ 69 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN---GISYEEIPLGKDI--T---GRSLRAVTGAMTVPQVFIDGELIGGSDDLEK 69 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc---CCCcEEEECCCCh--h---HHHHHHHhCCCCcCeEEECCEEEeCHHHHHH
Confidence 37899999999999999999863 4555 5554332 1 1222233588999999999988766554444
No 89
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.3e-05 Score=71.48 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=52.7
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEc---CCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCCChh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVEC---FPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPVRPR 339 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC---~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~~l~ 339 (365)
++.|.|.||+-|+.+++..++-+.++-+.+.+ |-|. ..++..+++|+..||.++ ||+ +..|.++-+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~------~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~~ 138 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE------HPELAEDYEISAVPTVLVFKNGEKVDRFVGAVPKE 138 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc------ccchHhhcceeeeeEEEEEECCEEeeeecccCCHH
Confidence 44555999999999999998733222222333 2222 458899999999999887 885 578999998
Q ss_pred hhhhhhhh
Q 017869 340 QGIWLSRN 347 (365)
Q Consensus 340 ~l~~~~~~ 347 (365)
.|..+.++
T Consensus 139 ~l~~~i~k 146 (150)
T KOG0910|consen 139 QLRSLIKK 146 (150)
T ss_pred HHHHHHHH
Confidence 88655443
No 90
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.99 E-value=2.1e-05 Score=62.76 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=50.5
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhhhhh
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQGIWL 344 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~~~ 344 (365)
.+++|+.+|||+|++.|+.+.+. .++|.+.+-+... ...+..++.|.+..|+.+++|+... ..+.+++.++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~---gI~~~~idi~~~~---~~~~~~~~~g~~~vPvv~i~~~~~~-Gf~~~~l~~~ 72 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESR---GFDFEMINVDRVP---EAAETLRAQGFRQLPVVIAGDLSWS-GFRPDMINRL 72 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHC---CCceEEEECCCCH---HHHHHHHHcCCCCcCEEEECCEEEe-cCCHHHHHHH
Confidence 47899999999999999999763 5776444433211 1234456678899999999986654 5667776543
No 91
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.96 E-value=2.1e-05 Score=66.74 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=46.4
Q ss_pred hhhHHHhhhhcccceEEEccCCCHhHHHHHHHHhhHhh---ccCceEEcCCCCCcCccccHHHHHhcCCce--eeEEEE-
Q 017869 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWVI- 327 (365)
Q Consensus 254 ~~~~~la~~L~~~gak~YgApWCpHC~~qk~~fgkeA~---~~l~yVeC~~~~~~~~~~~~~~C~~~~I~g--yPTw~i- 327 (365)
...++.|+.-.+.=+..|+|+||++|+.+++.+.+.+. ....+|..+-+.... ..-.+.++.| +||.++
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-----~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-----PKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-----chhhhcccCCCccceEEEE
Confidence 45567777766666777889999999999998877321 122454443332111 1234577876 999887
Q ss_pred --CCee
Q 017869 328 --NGQW 331 (365)
Q Consensus 328 --nG~~ 331 (365)
+|+.
T Consensus 84 ~~~Gk~ 89 (117)
T cd02959 84 DPSGDV 89 (117)
T ss_pred CCCCCC
Confidence 5643
No 92
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.9e-05 Score=77.22 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=60.7
Q ss_pred hhhHHHhhhhcccce-EEEccCCCHhHHHHHHHHhhHh---hc--cCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE
Q 017869 254 PFALSLAKHLHAIGA-KMYGAFWCSHCLEQKQMFGSEA---VK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (365)
Q Consensus 254 ~~~~~la~~L~~~ga-k~YgApWCpHC~~qk~~fgkeA---~~--~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i 327 (365)
..+..+-+.-++..+ ..|+||||++|+++.+.++|-+ .. +|.+|+||. ++.+...+||++.||-+.
T Consensus 32 nfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~--------~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 32 NFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA--------EPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred HHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc--------chhHHHHhCcCcCCeEEE
Confidence 444555555555444 4477999999999999999832 11 357899984 368899999999999664
Q ss_pred --CCee---cCCCCChhhhhhh
Q 017869 328 --NGQW---RARPVRPRQGIWL 344 (365)
Q Consensus 328 --nG~~---y~G~~~l~~l~~~ 344 (365)
+|+. +.|.+.-+++..|
T Consensus 104 f~dGqpVdgF~G~qPesqlr~~ 125 (304)
T COG3118 104 FKDGQPVDGFQGAQPESQLRQF 125 (304)
T ss_pred eeCCcCccccCCCCcHHHHHHH
Confidence 8875 7888877777553
No 93
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.4e-05 Score=65.83 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=46.4
Q ss_pred HhhhhcccceEEEccCCCHhHHHHHHHHhhHhhc--cCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCee
Q 017869 259 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQW 331 (365)
Q Consensus 259 la~~L~~~gak~YgApWCpHC~~qk~~fgkeA~~--~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~~ 331 (365)
.++...+.=+..|+|.|||-|+..+|.|++-+.+ +.-+ ||+|. . .+.|++.+|+..||..+ ||+.
T Consensus 16 ~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~-----~~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 16 AAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---L-----EEVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred HhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---C-----HhHHHhcCceEeeEEEEEECCEE
Confidence 3333334445666799999999999999995422 2333 66653 2 38899999999999988 7754
No 94
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.85 E-value=4.1e-05 Score=65.23 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=29.1
Q ss_pred HHHHHhcCCceeeEEEECCeecCCCCChhhhhh
Q 017869 311 AKACSDAKIEGFPTWVINGQWRARPVRPRQGIW 343 (365)
Q Consensus 311 ~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~~ 343 (365)
.+++++.||+|+||.++||+.+.|.++.+++..
T Consensus 119 ~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~~ 151 (154)
T cd03023 119 RQLARALGITGTPAFIIGDTVIPGAVPADTLKE 151 (154)
T ss_pred HHHHHHcCCCcCCeEEECCEEecCCCCHHHHHH
Confidence 456778899999999999999999999998764
No 95
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.83 E-value=2.5e-05 Score=78.65 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=50.2
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--hc----cC--ceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC-e----e
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--VK----QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q----W 331 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~~----~l--~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG-~----~ 331 (365)
=+.+|.|+||+||+++++.+.+-+ .+ ++ -+++|+.+ +... .+|++|||..+ +| + .
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n---------~~~~-~~i~~~Pt~~~~~~~~~~~~~~ 436 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN---------DVPP-FEVEGFPTIKFVPAGKKSEPVP 436 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC---------ccCC-CCccccCEEEEEeCCCCcCceE
Confidence 356677999999999999987722 22 23 34666532 2222 89999999888 44 2 5
Q ss_pred cCCCCChhhhhhhhhhh
Q 017869 332 RARPVRPRQGIWLSRNE 348 (365)
Q Consensus 332 y~G~~~l~~l~~~~~~e 348 (365)
|.|.++.++++.+-++.
T Consensus 437 ~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 437 YDGDRTLEDFSKFIAKH 453 (462)
T ss_pred ecCcCCHHHHHHHHHhc
Confidence 89999999986654443
No 96
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.79 E-value=4.9e-05 Score=72.03 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=57.2
Q ss_pred cccceEEEccCCCHhHHHHHHHHhhHhhccC--------------------ceEEcCCCC---C---------------c
Q 017869 264 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQL--------------------NYVECFPDG---Y---------------R 305 (365)
Q Consensus 264 ~~~gak~YgApWCpHC~~qk~~fgkeA~~~l--------------------~yVeC~~~~---~---------------~ 305 (365)
.+..+..|+.|-||||+++++++.+-....+ ..+-|..|. + +
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~ 186 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDV 186 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccc
Confidence 3445778999999999999988766210000 024443211 0 0
Q ss_pred CccccHHHHHhcCCceeeEEEE-CCeecCCCCChhhhhhhh
Q 017869 306 KGTKIAKACSDAKIEGFPTWVI-NGQWRARPVRPRQGIWLS 345 (365)
Q Consensus 306 ~~~~~~~~C~~~~I~gyPTw~i-nG~~y~G~~~l~~l~~~~ 345 (365)
.-+.+.+++++.||+|+||+++ ||+..+|.++.++|..+-
T Consensus 187 ~v~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~~~~L~~~l 227 (232)
T PRK10877 187 DIADHYALGVQFGVQGTPAIVLSNGTLVPGYQGPKEMKAFL 227 (232)
T ss_pred hHHHhHHHHHHcCCccccEEEEcCCeEeeCCCCHHHHHHHH
Confidence 0134678899999999999999 999999999999986543
No 97
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.74 E-value=4.7e-05 Score=61.54 Aligned_cols=74 Identities=9% Similarity=0.100 Sum_probs=53.4
Q ss_pred hhcccceEEEcc-----CCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCC
Q 017869 262 HLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRAR 334 (365)
Q Consensus 262 ~L~~~gak~YgA-----pWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G 334 (365)
.+++..+.+|.- ||||+|++.|+.+.+. .++| +|.+.+ ...+..+.+..|-+.+|...|||+.+-|
T Consensus 4 ~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~---~i~y~~idv~~~----~~~~~~l~~~~g~~tvP~vfi~g~~iGG 76 (90)
T cd03028 4 LIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL---GVDFGTFDILED----EEVRQGLKEYSNWPTFPQLYVNGELVGG 76 (90)
T ss_pred hhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc---CCCeEEEEcCCC----HHHHHHHHHHhCCCCCCEEEECCEEEeC
Confidence 345667888844 7999999999999874 3555 554432 1234455555788899999999998888
Q ss_pred CCChhhhh
Q 017869 335 PVRPRQGI 342 (365)
Q Consensus 335 ~~~l~~l~ 342 (365)
-.++.++-
T Consensus 77 ~~~l~~l~ 84 (90)
T cd03028 77 CDIVKEMH 84 (90)
T ss_pred HHHHHHHH
Confidence 77776653
No 98
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.74 E-value=4.7e-05 Score=59.58 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=46.9
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhccCc-eEEcCCCCCcCccccHHHHHhcCCceeeEEEECCe-ecCC-CCChhhhhh
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLN-YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-WRAR-PVRPRQGIW 343 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~~l~-yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~-~y~G-~~~l~~l~~ 343 (365)
.+++| .++||+|.++.+.+.+. ..+.+ -+|+.... ...+ ..++||.+.||.+|||+ ++.| .-+.++++.
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~-~~~~~i~~ei~~~~-----~~~~-~~~ygv~~vPalvIng~~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEA-AEELGIEVEIIDIE-----DFEE-IEKYGVMSVPALVINGKVVFVGRVPSKEELKE 73 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHH-HHHTTEEEEEEETT-----THHH-HHHTT-SSSSEEEETTEEEEESS--HHHHHHH
T ss_pred EEEEe-CCCCCCcHHHHHHHHHH-HHhcCCeEEEEEcc-----CHHH-HHHcCCCCCCEEEECCEEEEEecCCCHHHHHH
Confidence 46777 67799999999998863 33444 23443211 1334 49999999999999997 5889 777777754
Q ss_pred h
Q 017869 344 L 344 (365)
Q Consensus 344 ~ 344 (365)
+
T Consensus 74 ~ 74 (76)
T PF13192_consen 74 L 74 (76)
T ss_dssp H
T ss_pred H
Confidence 3
No 99
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.73 E-value=0.0001 Score=63.31 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=45.4
Q ss_pred eEEEcc-------CCCHhHHHHHHHHhhHh--hc-cCceEEcCCCCCc-CccccHHHHHhcCCc-eeeEEEE--CCeecC
Q 017869 268 AKMYGA-------FWCSHCLEQKQMFGSEA--VK-QLNYVECFPDGYR-KGTKIAKACSDAKIE-GFPTWVI--NGQWRA 333 (365)
Q Consensus 268 ak~YgA-------pWCpHC~~qk~~fgkeA--~~-~l~yVeC~~~~~~-~~~~~~~~C~~~~I~-gyPTw~i--nG~~y~ 333 (365)
+..|.| +|||+|+.+++.+.+-+ .. ++.++.++-+... -+.+..++-.+.+|+ +.||+++ +|++..
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLV 104 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceec
Confidence 555669 99999999999887722 22 3556666543210 001235777889998 9999988 556665
Q ss_pred CCC
Q 017869 334 RPV 336 (365)
Q Consensus 334 G~~ 336 (365)
|..
T Consensus 105 ~~~ 107 (119)
T cd02952 105 EDE 107 (119)
T ss_pred chh
Confidence 554
No 100
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.73 E-value=0.0001 Score=63.58 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=45.5
Q ss_pred hhhHHHhhhhcccceEEEccCCCHhHHHHHH-HHhh-Hhhc----cCceEEcCCCCCcCccc-cHHHHH-hcCCceeeEE
Q 017869 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGS-EAVK----QLNYVECFPDGYRKGTK-IAKACS-DAKIEGFPTW 325 (365)
Q Consensus 254 ~~~~~la~~L~~~gak~YgApWCpHC~~qk~-~fgk-eA~~----~l~yVeC~~~~~~~~~~-~~~~C~-~~~I~gyPTw 325 (365)
++.++.|+.-.+.=+..|+|.||+.|+.+++ .|.+ +-.+ ++-.|..|.++.....+ ..+..+ .+|+.|+||+
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 4456667776665566688999999999975 4655 2112 23345555543211000 011111 2589999999
Q ss_pred EE---CCee
Q 017869 326 VI---NGQW 331 (365)
Q Consensus 326 ~i---nG~~ 331 (365)
++ +|+.
T Consensus 85 vfl~~~G~~ 93 (124)
T cd02955 85 VFLTPDLKP 93 (124)
T ss_pred EEECCCCCE
Confidence 98 5643
No 101
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.69 E-value=0.00012 Score=64.88 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=46.6
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh--hcc-CceEEcCCCCCcCccccHHHHHhcCCceeeEEE-E--CCe----ecCC---
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA--VKQ-LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV-I--NGQ----WRAR--- 334 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA--~~~-l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~-i--nG~----~y~G--- 334 (365)
+.-|+|.|||+|+.+.+.+.+-| .++ ...+.+|-|+ .+++.++.+|++.||.+ + ||+ +..|
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe------~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~ 100 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE------VPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNN 100 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC------CHHHHHHcCccCCCcEEEEEECCeEEEEEeccccc
Confidence 45566999999999999998843 222 2224444332 35899999999776655 4 775 3566
Q ss_pred -----CCChhhhhh
Q 017869 335 -----PVRPRQGIW 343 (365)
Q Consensus 335 -----~~~l~~l~~ 343 (365)
..+.++++.
T Consensus 101 k~~~~~~~k~~l~~ 114 (142)
T PLN00410 101 KINWALKDKQEFID 114 (142)
T ss_pred ccccccCCHHHHHH
Confidence 455555544
No 102
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.62 E-value=6.6e-05 Score=68.61 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=57.8
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhhHhhccC-------------------ceEEcCCCC---C----------
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQL-------------------NYVECFPDG---Y---------- 304 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgkeA~~~l-------------------~yVeC~~~~---~---------- 304 (365)
+.+++.-.+..+.+|..|.||||+++++.+.+.. .++ ..+-|..|. +
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~~~-~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~ 148 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKPNA-DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVP 148 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhhcc-CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCC
Confidence 3344444566788999999999999998876311 000 123332110 0
Q ss_pred -------cCccccHHHHHhcCCceeeEEEE-CCeecCCCCChhhhhh
Q 017869 305 -------RKGTKIAKACSDAKIEGFPTWVI-NGQWRARPVRPRQGIW 343 (365)
Q Consensus 305 -------~~~~~~~~~C~~~~I~gyPTw~i-nG~~y~G~~~l~~l~~ 343 (365)
+.-.++.+++++.||+|+||+++ ||+.++|..+.++|..
T Consensus 149 ~~~~~~~~~i~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~~~~l~~ 195 (197)
T cd03020 149 PPAASCDNPVAANLALGRQLGVNGTPTIVLADGRVVPGAPPAAQLEA 195 (197)
T ss_pred CCccccCchHHHHHHHHHHcCCCcccEEEECCCeEecCCCCHHHHHh
Confidence 01133568899999999999999 6999999999888743
No 103
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.59 E-value=0.00021 Score=60.10 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=44.4
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhcc-CceEEcCCCC---------------CcC--ccccHHHHHhcCCceeeE-EEE
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQ-LNYVECFPDG---------------YRK--GTKIAKACSDAKIEGFPT-WVI 327 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~~-l~yVeC~~~~---------------~~~--~~~~~~~C~~~~I~gyPT-w~i 327 (365)
-+.+|.|.|||+|+++.+.+.+-+.+. +..|..+.++ +.. -+.+.++++..++.++|+ .++
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~l 107 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLI 107 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEE
Confidence 355556999999999998887632111 2222221100 000 011346788899999995 555
Q ss_pred --CCe---ecCCCCChhhh
Q 017869 328 --NGQ---WRARPVRPRQG 341 (365)
Q Consensus 328 --nG~---~y~G~~~l~~l 341 (365)
+|+ ++.|..+.+++
T Consensus 108 d~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 108 DGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCceEEEEEeccCChHhc
Confidence 564 47787776654
No 104
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.56 E-value=0.00019 Score=57.81 Aligned_cols=72 Identities=14% Similarity=0.054 Sum_probs=49.3
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhh---ccCceEEcCCCCCcCccccHHHHHhcCCc--eeeEEEE--C--Ceec--C-CC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--N--GQWR--A-RP 335 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~---~~l~yVeC~~~~~~~~~~~~~~C~~~~I~--gyPTw~i--n--G~~y--~-G~ 335 (365)
+.+|.++||++|++.++.+.+-|. .++.++-.|.+. +.++++..||+ ++||.++ + |+.| . |.
T Consensus 16 ~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~------~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 16 LVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD------FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred EEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh------hHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 567779999999999999988432 234444444332 35789999999 9999887 4 5444 2 22
Q ss_pred CChhhhhhhh
Q 017869 336 VRPRQGIWLS 345 (365)
Q Consensus 336 ~~l~~l~~~~ 345 (365)
.+.+++..|.
T Consensus 90 ~~~~~l~~fi 99 (103)
T cd02982 90 LTAESLEEFV 99 (103)
T ss_pred cCHHHHHHHH
Confidence 3666665443
No 105
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.55 E-value=0.00019 Score=61.31 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=42.8
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhh--cc-CceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAV--KQ-LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~--~~-l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~~ 331 (365)
+.-|+|.|||-|+.+.+.+.+-|. ++ .....+|-|+ .++.+++.+|+.-||.++ ||+.
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe------v~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK------VPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc------cHHHHHhcCceeCcEEEEEECCcE
Confidence 566889999999999999998442 22 3333444332 358999999999999887 7753
No 106
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.55 E-value=0.0012 Score=60.05 Aligned_cols=77 Identities=22% Similarity=0.239 Sum_probs=46.7
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCc-----------------cccHHHHHhcCCceee-EEEE-
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKIEGFP-TWVI- 327 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~-----------------~~~~~~C~~~~I~gyP-Tw~i- 327 (365)
-+..|.|.|||+|+++.+.+.+-+.+.+..+-.+-++.... +.+.+..++.|+.++| |.+|
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid 150 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLID 150 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEEC
Confidence 45556699999999999888763222333222211100000 0122456678999999 5666
Q ss_pred -CC---eecCCCCChhhhhh
Q 017869 328 -NG---QWRARPVRPRQGIW 343 (365)
Q Consensus 328 -nG---~~y~G~~~l~~l~~ 343 (365)
|| +++.|..+.+++..
T Consensus 151 ~~G~i~~~~~G~~~~~~l~~ 170 (185)
T PRK15412 151 GNGIIRYRHAGDLNPRVWES 170 (185)
T ss_pred CCceEEEEEecCCCHHHHHH
Confidence 56 35889888877644
No 107
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.52 E-value=0.00026 Score=58.78 Aligned_cols=85 Identities=12% Similarity=0.047 Sum_probs=51.2
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCC--------------CcC-ccccHHHHHhcCC
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDG--------------YRK-GTKIAKACSDAKI 319 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~--------------~~~-~~~~~~~C~~~~I 319 (365)
.+++....+.-+.+|.++|||+|+.+.+.+.+- .++... |..+.+. +.. ...+.++++..+|
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 91 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQL-AADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGV 91 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChHHHHH-HhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCC
Confidence 333333335566777799999999998888752 122322 2222110 000 0113478999999
Q ss_pred ceeeEEEE---CC--eecCCCCChhhhh
Q 017869 320 EGFPTWVI---NG--QWRARPVRPRQGI 342 (365)
Q Consensus 320 ~gyPTw~i---nG--~~y~G~~~l~~l~ 342 (365)
.++||..+ || +++.|..+.+++.
T Consensus 92 ~~~P~~~vid~~gi~~~~~g~~~~~~~~ 119 (123)
T cd03011 92 SVTPAIVIVDPGGIVFVTTGVTSEWGLR 119 (123)
T ss_pred CcccEEEEEcCCCeEEEEeccCCHHHHH
Confidence 99999777 44 3477877777763
No 108
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.50 E-value=0.00039 Score=61.16 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=53.5
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhhHh--hc--cCc--eEEcCCCCCc---------C-----ccccHHHHHh
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGYR---------K-----GTKIAKACSD 316 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgkeA--~~--~l~--yVeC~~~~~~---------~-----~~~~~~~C~~ 316 (365)
..+...-.+.-+.+|.|+|||+|++..+.+.+.. .+ .+. .|+++.+... - .....++++.
T Consensus 54 ~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 133 (173)
T PRK03147 54 IELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDA 133 (173)
T ss_pred EeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 4454433344455666999999999887776622 11 132 3555432100 0 0113477899
Q ss_pred cCCceeeEEE-E--CCe---ecCCCCChhhhhh
Q 017869 317 AKIEGFPTWV-I--NGQ---WRARPVRPRQGIW 343 (365)
Q Consensus 317 ~~I~gyPTw~-i--nG~---~y~G~~~l~~l~~ 343 (365)
.+++++|+.. + ||+ .+.|..+.+++..
T Consensus 134 ~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~ 166 (173)
T PRK03147 134 YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEE 166 (173)
T ss_pred cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 9999999855 4 575 4789998888755
No 109
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.50 E-value=0.00022 Score=49.37 Aligned_cols=58 Identities=21% Similarity=0.384 Sum_probs=38.7
Q ss_pred EEEccCCCHhHHHHHHHHhhH--hhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECC
Q 017869 269 KMYGAFWCSHCLEQKQMFGSE--AVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 329 (365)
Q Consensus 269 k~YgApWCpHC~~qk~~fgke--A~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG 329 (365)
.+|.+.|||||+++++.+.+. ...++.++..+.++..+ ..+...+.++..+|+.++.+
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA---LEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH---HhhHHHhCCCccccEEEEEe
Confidence 567799999999999998863 12345665554443221 11223578999999998843
No 110
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.48 E-value=0.00018 Score=65.48 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=41.2
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhc--cCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~--~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~~ 331 (365)
+..|+|+|||.|+.+.+.+.+-|.+ .+.++..+.+. . +++.+++|++.||+++ ||+.
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~------~-~l~~~f~v~~vPTlllyk~G~~ 147 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA------T-GASDEFDTDALPALLVYKGGEL 147 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc------h-hhHHhCCCCCCCEEEEEECCEE
Confidence 4556699999999999999885432 23344444331 2 6788899999999988 8864
No 111
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.40 E-value=0.0004 Score=62.28 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=45.9
Q ss_pred ccceEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCc-----------------cccHHHHHhcCCceee-EEE
Q 017869 265 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKIEGFP-TWV 326 (365)
Q Consensus 265 ~~gak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~-----------------~~~~~~C~~~~I~gyP-Tw~ 326 (365)
+.=+.+|.|.|||+|+++.+.+.+-+.+.+..+-.+.++..++ +...++.++.++.++| |.+
T Consensus 64 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~ 143 (173)
T TIGR00385 64 KPVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFL 143 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEE
Confidence 3345556699999999998887663222232222211100000 0122456678999999 566
Q ss_pred E--CCe---ecCCCCChhhhh
Q 017869 327 I--NGQ---WRARPVRPRQGI 342 (365)
Q Consensus 327 i--nG~---~y~G~~~l~~l~ 342 (365)
| ||+ ++.|..+-+++.
T Consensus 144 id~~G~i~~~~~G~~~~~~l~ 164 (173)
T TIGR00385 144 VDGNGVILYRHAGPLNNEVWT 164 (173)
T ss_pred EcCCceEEEEEeccCCHHHHH
Confidence 6 575 477888888763
No 112
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.38 E-value=0.00013 Score=63.21 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=30.0
Q ss_pred cHHHHHhcCCceeeEEEECCeecCCCCChhhhhhhh
Q 017869 310 IAKACSDAKIEGFPTWVINGQWRARPVRPRQGIWLS 345 (365)
Q Consensus 310 ~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~~~~ 345 (365)
..+++++.||+++||.+|||+.+.|.++.+++..+.
T Consensus 125 ~~~~~~~~~i~~tPt~~inG~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFINGKYVVGPYTIEELKELI 160 (162)
T ss_dssp HHHHHHHHT-SSSSEEEETTCEEETTTSHHHHHHHH
T ss_pred HHHHHHHcCCccccEEEECCEEeCCCCCHHHHHHHH
Confidence 445677889999999999999999999999986654
No 113
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.37 E-value=0.00027 Score=72.35 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=47.7
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHh------cCCceeeEEEECCeecCCCCCh
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSD------AKIEGFPTWVINGQWRARPVRP 338 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~------~~I~gyPTw~inG~~y~G~~~l 338 (365)
.+++|+.+|||||+++|+.+.+. .++| +|.+.+. ......+...+ .|-+..|+..|||+...|-.++
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~---gi~~~~idi~~~~--~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN---DIPFTQISLDDDV--KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC---CCCeEEEECCCCh--hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHH
Confidence 48899999999999999999974 5676 5554321 10000011222 3778999999999888887777
Q ss_pred hh
Q 017869 339 RQ 340 (365)
Q Consensus 339 ~~ 340 (365)
.+
T Consensus 78 ~~ 79 (410)
T PRK12759 78 MA 79 (410)
T ss_pred HH
Confidence 55
No 114
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.28 E-value=0.0016 Score=58.23 Aligned_cols=80 Identities=9% Similarity=0.008 Sum_probs=47.3
Q ss_pred cccceEEEccCCCHhHHHHHHHHhhHhhc-cCc--eEEcCCCCCc--Cc--cccHHHHHh-c---CCceeeEEEE---CC
Q 017869 264 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYR--KG--TKIAKACSD-A---KIEGFPTWVI---NG 329 (365)
Q Consensus 264 ~~~gak~YgApWCpHC~~qk~~fgkeA~~-~l~--yVeC~~~~~~--~~--~~~~~~C~~-~---~I~gyPTw~i---nG 329 (365)
.+..+..|.|+|||+|++..+.+.+-+.+ .+. .|+.|.+... .. ....+...+ . ++.++||-.+ +|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G 129 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT 129 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence 34458888899999999999998873211 232 3454432100 00 001222222 3 7899999665 44
Q ss_pred e----ecCCCCChhhhhh
Q 017869 330 Q----WRARPVRPRQGIW 343 (365)
Q Consensus 330 ~----~y~G~~~l~~l~~ 343 (365)
. .+.|..+.+++..
T Consensus 130 ~~i~~~~~G~~s~~~l~~ 147 (153)
T TIGR02738 130 RKAYPVLQGAVDEAELAN 147 (153)
T ss_pred CEEEEEeecccCHHHHHH
Confidence 3 4678888887643
No 115
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.25 E-value=0.00043 Score=54.54 Aligned_cols=67 Identities=25% Similarity=0.301 Sum_probs=41.6
Q ss_pred hhhHHHhhhhcccceEEEccCCCHhHHHHHHHHhh-Hh-----hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE
Q 017869 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS-EA-----VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (365)
Q Consensus 254 ~~~~~la~~L~~~gak~YgApWCpHC~~qk~~fgk-eA-----~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i 327 (365)
+...+.|+.-.+-=+.+|+|.||++|+.+++.+-. +. .+++-.+..|-+..+ .+. . .+-+|+||+++
T Consensus 7 ~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~-----~~~-~-~~~~~~P~~~~ 79 (82)
T PF13899_consen 7 EEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED-----PNA-Q-FDRQGYPTFFF 79 (82)
T ss_dssp HHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH-----HHH-H-HHHCSSSEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC-----hhH-H-hCCccCCEEEE
Confidence 44567777777777888999999999999977633 11 223334555433211 122 1 11178999876
No 116
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.24 E-value=0.0012 Score=64.07 Aligned_cols=90 Identities=10% Similarity=0.023 Sum_probs=56.7
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhhHhhc-cCc--eEEcCCCCC---cCccccHHHHHhcCCceeeEEEE---
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGY---RKGTKIAKACSDAKIEGFPTWVI--- 327 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgkeA~~-~l~--yVeC~~~~~---~~~~~~~~~C~~~~I~gyPTw~i--- 327 (365)
..+++--.+.++.+|.|.|||+|+++.+.+.+-+.+ .+. .|+.|.+.. ........+.++.||+++||..+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 445444456788889999999999999888763211 122 355443210 00011235678899999999887
Q ss_pred CCe----ecCCCCChhhhhhhhh
Q 017869 328 NGQ----WRARPVRPRQGIWLSR 346 (365)
Q Consensus 328 nG~----~y~G~~~l~~l~~~~~ 346 (365)
||+ ...|..+.++|.....
T Consensus 239 ~~~~v~~v~~G~~s~~eL~~~i~ 261 (271)
T TIGR02740 239 DPNQFTPIGFGVMSADELVDRIL 261 (271)
T ss_pred CCCEEEEEEeCCCCHHHHHHHHH
Confidence 342 2458888888755333
No 117
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00077 Score=56.75 Aligned_cols=83 Identities=12% Similarity=0.043 Sum_probs=61.2
Q ss_pred HhhhhcccceEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCCh
Q 017869 259 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRP 338 (365)
Q Consensus 259 la~~L~~~gak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l 338 (365)
+-+-.++..+.+|+-.|||+|+++|.+|.+. ......+|-|.+.. ..+.|..+-+-.|-+..|...|||+..-|..++
T Consensus 7 v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~-~v~~~vvELD~~~~-g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl 84 (104)
T KOG1752|consen 7 VRKMISENPVVIFSKSSCPYCHRAKELLSDL-GVNPKVVELDEDED-GSEIQKALKKLTGQRTVPNVFIGGKFIGGASDL 84 (104)
T ss_pred HHHHhhcCCEEEEECCcCchHHHHHHHHHhC-CCCCEEEEccCCCC-cHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHH
Confidence 3344566789999999999999999999972 11223477776532 224566666667888999999999999888888
Q ss_pred hhhhh
Q 017869 339 RQGIW 343 (365)
Q Consensus 339 ~~l~~ 343 (365)
.++-.
T Consensus 85 ~~lh~ 89 (104)
T KOG1752|consen 85 MALHK 89 (104)
T ss_pred HHHHH
Confidence 77643
No 118
>smart00594 UAS UAS domain.
Probab=97.19 E-value=0.0022 Score=54.53 Aligned_cols=94 Identities=16% Similarity=0.055 Sum_probs=65.2
Q ss_pred ccccCCCchhhHHHhhhhcccceEEEccCCCHhHHHHHHH-HhhHhhc-cC--ceE--EcCCCCCcCccccHHHHHhcCC
Q 017869 246 TEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQM-FGSEAVK-QL--NYV--ECFPDGYRKGTKIAKACSDAKI 319 (365)
Q Consensus 246 ~~it~~s~~~~~~la~~L~~~gak~YgApWCpHC~~qk~~-fgkeA~~-~l--~yV--eC~~~~~~~~~~~~~~C~~~~I 319 (365)
|.....+-.+.++-|++-.+.-+.++.++||+.|++.... |..+... .+ .+| .+|-+.. + ..+++...++
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~-e---g~~l~~~~~~ 84 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTS-E---GQRVSQFYKL 84 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCCh-h---HHHHHHhcCc
Confidence 4455566677788888888888888899999999998743 5443211 12 233 2443221 1 3578999999
Q ss_pred ceeeEEEE---CC-e-------ecCCCCChhhhhh
Q 017869 320 EGFPTWVI---NG-Q-------WRARPVRPRQGIW 343 (365)
Q Consensus 320 ~gyPTw~i---nG-~-------~y~G~~~l~~l~~ 343 (365)
++||++.+ +| + +++|..+.++++.
T Consensus 85 ~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~ 119 (122)
T smart00594 85 DSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMT 119 (122)
T ss_pred CCCCEEEEEecCCCceeEEEeccccCCCCHHHHHH
Confidence 99999988 43 1 5789999888754
No 119
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.11 E-value=0.00088 Score=57.11 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=43.5
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhhHh--hc----cC--ceEEcCCCCC------------c----Cc-cccH
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK----QL--NYVECFPDGY------------R----KG-TKIA 311 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgkeA--~~----~l--~yVeC~~~~~------------~----~~-~~~~ 311 (365)
+.++..-.+.=+.+|.|+|||+|+++.+.+.+-+ .+ .+ -.|..+.+.. . .. ..+.
T Consensus 10 v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (132)
T cd02964 10 VPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRE 89 (132)
T ss_pred ccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHH
Confidence 4444333444566777999999999988876521 11 22 2455554310 0 00 1123
Q ss_pred HHHHhcCCceeeEEEE---CCee
Q 017869 312 KACSDAKIEGFPTWVI---NGQW 331 (365)
Q Consensus 312 ~~C~~~~I~gyPTw~i---nG~~ 331 (365)
.+-+..+|.++||.++ ||+.
T Consensus 90 ~~~~~~~v~~iPt~~lid~~G~i 112 (132)
T cd02964 90 LLEKQFKVEGIPTLVVLKPDGDV 112 (132)
T ss_pred HHHHHcCCCCCCEEEEECCCCCE
Confidence 4556689999999876 5643
No 120
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.09 E-value=0.0011 Score=52.38 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=39.5
Q ss_pred cccceEEEccCCCHhHHHHHHHHhhHh--h--ccCc--eEEcCCC-CCc-Cc-------------cccHHHHHhcCCcee
Q 017869 264 HAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPD-GYR-KG-------------TKIAKACSDAKIEGF 322 (365)
Q Consensus 264 ~~~gak~YgApWCpHC~~qk~~fgkeA--~--~~l~--yVeC~~~-~~~-~~-------------~~~~~~C~~~~I~gy 322 (365)
.+.-+.+|.+.|||+|+++.+.+.+.. . ..+. .|.++++ ... +. ....++.++.++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 445577888999999999988887622 1 1222 3666653 000 00 001356778888889
Q ss_pred eEEEE
Q 017869 323 PTWVI 327 (365)
Q Consensus 323 PTw~i 327 (365)
|++.+
T Consensus 99 P~~~l 103 (116)
T cd02966 99 PTTFL 103 (116)
T ss_pred ceEEE
Confidence 98765
No 121
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.08 E-value=0.0023 Score=67.56 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=49.1
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh--hc--cCceEEcCC-----CCCc-----------------CccccHHHHHhcCCce
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA--VK--QLNYVECFP-----DGYR-----------------KGTKIAKACSDAKIEG 321 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA--~~--~l~yVeC~~-----~~~~-----------------~~~~~~~~C~~~~I~g 321 (365)
+..|-|.|||+|+++.+.+.+-+ .+ .+..|-... ++.. -.+...++.+..+|++
T Consensus 60 vV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~g 139 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISV 139 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCC
Confidence 45555999999999998887622 11 232222210 0000 0011346788899999
Q ss_pred eeEEE-E--CCe---ecCCCCChhhhhhhhh
Q 017869 322 FPTWV-I--NGQ---WRARPVRPRQGIWLSR 346 (365)
Q Consensus 322 yPTw~-i--nG~---~y~G~~~l~~l~~~~~ 346 (365)
+||.+ | ||+ ++.|..+.+++..+.+
T Consensus 140 iPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 140 YPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred cCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 99984 5 574 5899999988866444
No 122
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.08 E-value=0.00092 Score=70.67 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=57.8
Q ss_pred HHHhhhh-cccceEEEccCCCHhHHHHHHHHhhHhhc--cCc--eEEcCCCCCcCccccHHHHHhcCCceeeEEEECCe-
Q 017869 257 LSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ- 330 (365)
Q Consensus 257 ~~la~~L-~~~gak~YgApWCpHC~~qk~~fgkeA~~--~l~--yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~- 330 (365)
++..+.| +...+++|-.++||||.+..+.+.+-+.. ++. .+|.+. .+++.++++|.+.|+.+|||+
T Consensus 468 ~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--------~~~~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 468 LEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--------FPDLKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred HHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--------cHHHHHhCCceecCEEEECCEE
Confidence 3333444 45679998899999999999888774322 232 233321 458898999999999999995
Q ss_pred ecCCCCChhhhhh
Q 017869 331 WRARPVRPRQGIW 343 (365)
Q Consensus 331 ~y~G~~~l~~l~~ 343 (365)
.+.|..+.++++.
T Consensus 540 ~~~G~~~~~~~~~ 552 (555)
T TIGR03143 540 VYFGKKTIEEMLE 552 (555)
T ss_pred EEeeCCCHHHHHH
Confidence 6899889998754
No 123
>PTZ00062 glutaredoxin; Provisional
Probab=97.08 E-value=0.0014 Score=61.29 Aligned_cols=90 Identities=9% Similarity=0.021 Sum_probs=62.0
Q ss_pred hhHHHhhhhcccceEEEcc-----CCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECC
Q 017869 255 FALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 329 (365)
Q Consensus 255 ~~~~la~~L~~~gak~YgA-----pWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG 329 (365)
....+.+..++..+.+|.- ||||+|++.|+++.+. .++|.+.|-++.. +.+..+-+..|-..+|...|||
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~---~i~y~~~DI~~d~--~~~~~l~~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS---GVKYETYNIFEDP--DLREELKVYSNWPTYPQLYVNG 176 (204)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc---CCCEEEEEcCCCH--HHHHHHHHHhCCCCCCeEEECC
Confidence 3355666777778888933 6999999999999973 5667665543211 1223333335778999999999
Q ss_pred eecCCCCChhhhhhhhhhhhhh
Q 017869 330 QWRARPVRPRQGIWLSRNESAQ 351 (365)
Q Consensus 330 ~~y~G~~~l~~l~~~~~~e~~~ 351 (365)
+.+-|-..+.++.. .+|++.
T Consensus 177 ~~IGG~d~l~~l~~--~G~L~~ 196 (204)
T PTZ00062 177 ELIGGHDIIKELYE--SNSLRK 196 (204)
T ss_pred EEEcChHHHHHHHH--cCChhh
Confidence 99988888877654 555543
No 124
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00094 Score=64.21 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=46.9
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCc----eEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCee---cCCC--C
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLN----YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQW---RARP--V 336 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~----yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~~---y~G~--~ 336 (365)
++=|+|.||+-|++..+.|..-+-++.. .||.|. .+.....+||+..||+++ ||++ +.|. .
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~--------c~~taa~~gV~amPTFiff~ng~kid~~qGAd~~ 96 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDE--------CRGTAATNGVNAMPTFIFFRNGVKIDQIQGADAS 96 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHH--------hhchhhhcCcccCceEEEEecCeEeeeecCCCHH
Confidence 3445599999999999999986544422 355442 234567799999999998 9965 5554 3
Q ss_pred Chhhhhh
Q 017869 337 RPRQGIW 343 (365)
Q Consensus 337 ~l~~l~~ 343 (365)
.||++++
T Consensus 97 gLe~kv~ 103 (288)
T KOG0908|consen 97 GLEEKVA 103 (288)
T ss_pred HHHHHHH
Confidence 4556544
No 125
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.07 E-value=0.0018 Score=56.64 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=41.9
Q ss_pred chhhHHHhhhhcccceEEEccCCCHhHHHHHHH-HhhHhhc-cC--ceE--EcCCCCCcCccccHHHHHhcCCceeeEEE
Q 017869 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQM-FGSEAVK-QL--NYV--ECFPDGYRKGTKIAKACSDAKIEGFPTWV 326 (365)
Q Consensus 253 ~~~~~~la~~L~~~gak~YgApWCpHC~~qk~~-fgkeA~~-~l--~yV--eC~~~~~~~~~~~~~~C~~~~I~gyPTw~ 326 (365)
-+..++.|+.-.+.=+.+|++.|||+|+++++. |.+...+ .+ .|| ..+.|..+++ ....+ +++||.+
T Consensus 12 ~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~------~~~~g-~~vPtiv 84 (130)
T cd02960 12 YEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN------LSPDG-QYVPRIM 84 (130)
T ss_pred HHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC------cCccC-cccCeEE
Confidence 355677777777776777889999999999876 4442211 12 233 4443322111 11234 7999999
Q ss_pred E
Q 017869 327 I 327 (365)
Q Consensus 327 i 327 (365)
+
T Consensus 85 F 85 (130)
T cd02960 85 F 85 (130)
T ss_pred E
Confidence 8
No 126
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.03 E-value=0.00086 Score=56.70 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=45.2
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhhH--hhc----cC--ceEEcCCCCC--c--------------CccccHH
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE--AVK----QL--NYVECFPDGY--R--------------KGTKIAK 312 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgke--A~~----~l--~yVeC~~~~~--~--------------~~~~~~~ 312 (365)
+.++..-.+.-+.+|.|+|||+|+++.+.+.+. ..+ .+ -.|..|.+.. . .......
T Consensus 11 v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T cd03009 11 VPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSR 90 (131)
T ss_pred ccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHH
Confidence 444444445557778899999999998887652 111 12 2344443210 0 0011246
Q ss_pred HHHhcCCceeeEEEE---CCee
Q 017869 313 ACSDAKIEGFPTWVI---NGQW 331 (365)
Q Consensus 313 ~C~~~~I~gyPTw~i---nG~~ 331 (365)
++++.+|+++||..+ ||+.
T Consensus 91 ~~~~~~v~~~P~~~lid~~G~i 112 (131)
T cd03009 91 LNRTFKIEGIPTLIILDADGEV 112 (131)
T ss_pred HHHHcCCCCCCEEEEECCCCCE
Confidence 788899999999776 5654
No 127
>PRK10824 glutaredoxin-4; Provisional
Probab=97.00 E-value=0.0016 Score=55.69 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=58.1
Q ss_pred HHhhhhcccceEEEcc-----CCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeec
Q 017869 258 SLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWR 332 (365)
Q Consensus 258 ~la~~L~~~gak~YgA-----pWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y 332 (365)
.+.+..++..+.+|.. ||||+|++.|.++.+. .....++|.+.+. +.+..+=+..|-+-+|-..|||+..
T Consensus 7 ~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-~i~~~~idi~~d~----~~~~~l~~~sg~~TVPQIFI~G~~I 81 (115)
T PRK10824 7 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC-GERFAYVDILQNP----DIRAELPKYANWPTFPQLWVDGELV 81 (115)
T ss_pred HHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc-CCCceEEEecCCH----HHHHHHHHHhCCCCCCeEEECCEEE
Confidence 4455566777888865 6999999999999873 2233346665331 1233444446888999999999999
Q ss_pred CCCCChhhhhhhhhhhhh
Q 017869 333 ARPVRPRQGIWLSRNESA 350 (365)
Q Consensus 333 ~G~~~l~~l~~~~~~e~~ 350 (365)
-|-.++.++-. ++|+.
T Consensus 82 GG~ddl~~l~~--~G~L~ 97 (115)
T PRK10824 82 GGCDIVIEMYQ--RGELQ 97 (115)
T ss_pred cChHHHHHHHH--CCCHH
Confidence 88877777533 44443
No 128
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.00 E-value=0.0012 Score=61.03 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=42.7
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhc--cCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCe---ecCCCCCh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---WRARPVRP 338 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~--~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~---~y~G~~~l 338 (365)
+..|+|+|||.|+.+.+.+.+-|.+ .+.++..+.+ +....++|++.||.++ ||+ ++.|..++
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad---------~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~ 174 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST---------QCIPNYPDKNLPTILVYRNGDIVKQFIGLLEF 174 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH---------HhHhhCCCCCCCEEEEEECCEEEEEEeCchhh
Confidence 3445599999999999999985433 2335555432 2246789999999988 885 45555444
No 129
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.94 E-value=0.00068 Score=55.54 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=36.6
Q ss_pred cceEEEccCCCHhHHHHHHHHhhHh---hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEE
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV 326 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgkeA---~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~ 326 (365)
.-+.+|.++|||+|+++.+.+.+-+ ..++..+....+. .+...+.++++++.++|+..
T Consensus 23 ~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~---~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 23 PTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGE---KAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred eEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCC---HHHHHHHHHHhCCCCCcEEe
Confidence 3356666999999999998887621 1223333332221 12245678888998899854
No 130
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.94 E-value=0.0013 Score=52.25 Aligned_cols=60 Identities=20% Similarity=0.372 Sum_probs=34.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhH--hhc---cCc--eEEcCCCC-------------CcC----ccccHHHHHhcCCceee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSE--AVK---QLN--YVECFPDG-------------YRK----GTKIAKACSDAKIEGFP 323 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgke--A~~---~l~--yVeC~~~~-------------~~~----~~~~~~~C~~~~I~gyP 323 (365)
+.+|.|+||++|++..+.+.+. ..+ ++. +|.+|.+. +.. ...+.++.+..+|+++|
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP 84 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIP 84 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCC
Confidence 5677799999999998777662 122 222 34454320 000 01245667778888888
Q ss_pred EEEE
Q 017869 324 TWVI 327 (365)
Q Consensus 324 Tw~i 327 (365)
+.++
T Consensus 85 ~~~l 88 (95)
T PF13905_consen 85 TLVL 88 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8777
No 131
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.91 E-value=0.0024 Score=49.46 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=42.3
Q ss_pred EEEccCCCHhHHHHHHHHhhHh---hccC--ceEEcCCCCCc---Cc---------------------cccHHHHHhcCC
Q 017869 269 KMYGAFWCSHCLEQKQMFGSEA---VKQL--NYVECFPDGYR---KG---------------------TKIAKACSDAKI 319 (365)
Q Consensus 269 k~YgApWCpHC~~qk~~fgkeA---~~~l--~yVeC~~~~~~---~~---------------------~~~~~~C~~~~I 319 (365)
.+|..|.||||...++.+.+.. ..++ .++.....+.. .. -.+.+..++.|+
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 81 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGV 81 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCC
Confidence 5677999999999998887631 1122 22333222210 00 012345677899
Q ss_pred ceeeEEEECCeecCCC
Q 017869 320 EGFPTWVINGQWRARP 335 (365)
Q Consensus 320 ~gyPTw~inG~~y~G~ 335 (365)
+|.||+++||+.|.|.
T Consensus 82 ~g~Pt~v~~~~~~~~~ 97 (98)
T cd02972 82 TGTPTFVVNGEKYSGA 97 (98)
T ss_pred CCCCEEEECCEEcCCC
Confidence 9999999999777664
No 132
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.82 E-value=0.0057 Score=50.92 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=59.2
Q ss_pred hhhHHHhhhhcccceEEEccCCCHhHHHHHH-HHhhHhhc-cC--ce--EEcCCCCCcCccccHHHHHhcCCceeeEEEE
Q 017869 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVK-QL--NY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (365)
Q Consensus 254 ~~~~~la~~L~~~gak~YgApWCpHC~~qk~-~fgkeA~~-~l--~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i 327 (365)
++.++.|+.-.+.=+.++.++||+.|+.++. .|..+... .+ .| +..|.++ . ...+.+...+++++||..+
T Consensus 7 ~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~--~--e~~~~~~~~~~~~~P~~~~ 82 (114)
T cd02958 7 EDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS--S--EGQRFLQSYKVDKYPHIAI 82 (114)
T ss_pred HHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC--c--cHHHHHHHhCccCCCeEEE
Confidence 5567778887777778888999999999864 56553322 12 24 3334322 1 1357888999999999887
Q ss_pred ----CC---eecCCCCChhhhhh
Q 017869 328 ----NG---QWRARPVRPRQGIW 343 (365)
Q Consensus 328 ----nG---~~y~G~~~l~~l~~ 343 (365)
+| ++++|-.+.+++..
T Consensus 83 i~~~~g~~l~~~~G~~~~~~f~~ 105 (114)
T cd02958 83 IDPRTGEVLKVWSGNITPEDLLS 105 (114)
T ss_pred EeCccCcEeEEEcCCCCHHHHHH
Confidence 45 35789999988643
No 133
>PTZ00062 glutaredoxin; Provisional
Probab=96.74 E-value=0.0036 Score=58.62 Aligned_cols=60 Identities=5% Similarity=-0.127 Sum_probs=42.9
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CCee---cCCCCChh
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQW---RARPVRPR 339 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG~~---y~G~~~l~ 339 (365)
-+.+|.|+|||.|+..++.+.+-+ ...+.++..+. + ++|.+.||.++ ||+. +.|.. ..
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~----------d----~~V~~vPtfv~~~~g~~i~r~~G~~-~~ 84 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNL----------A----DANNEYGVFEFYQNSQLINSLEGCN-TS 84 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEcc----------c----cCcccceEEEEEECCEEEeeeeCCC-HH
Confidence 477888999999999999988743 22355555542 1 89999999998 7854 55543 44
Q ss_pred hh
Q 017869 340 QG 341 (365)
Q Consensus 340 ~l 341 (365)
++
T Consensus 85 ~~ 86 (204)
T PTZ00062 85 TL 86 (204)
T ss_pred HH
Confidence 43
No 134
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.73 E-value=0.0028 Score=66.37 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=62.2
Q ss_pred hhhHHHhhhh-cccceEEEccCCCHhHHHHHHHHhhHhhccCceEEcCC-CCCcCccccHHHHHhcCCceeeEEEECCe-
Q 017869 254 PFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFP-DGYRKGTKIAKACSDAKIEGFPTWVINGQ- 330 (365)
Q Consensus 254 ~~~~~la~~L-~~~gak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~-~~~~~~~~~~~~C~~~~I~gyPTw~inG~- 330 (365)
+...+..+.+ +.+.+++|..+.||||.+..+.+.+.|. .-|.|+.+. |+ ...+++..+++|.+.|+..+||+
T Consensus 105 ~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~-~~~~i~~~~id~----~~~~~~~~~~~v~~VP~~~i~~~~ 179 (517)
T PRK15317 105 QEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAV-LNPNITHTMIDG----ALFQDEVEARNIMAVPTVFLNGEE 179 (517)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHH-hCCCceEEEEEc----hhCHhHHHhcCCcccCEEEECCcE
Confidence 3444545555 5678999999999999999999987543 223333221 11 12568899999999999999984
Q ss_pred ecCCCCChhhhhhh
Q 017869 331 WRARPVRPRQGIWL 344 (365)
Q Consensus 331 ~y~G~~~l~~l~~~ 344 (365)
.++|..+.++++..
T Consensus 180 ~~~g~~~~~~~~~~ 193 (517)
T PRK15317 180 FGQGRMTLEEILAK 193 (517)
T ss_pred EEecCCCHHHHHHH
Confidence 68999999887664
No 135
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.50 E-value=0.004 Score=54.78 Aligned_cols=29 Identities=31% Similarity=0.573 Sum_probs=24.0
Q ss_pred HHHHHhcCCceeeEEEECCeecCCCCChh
Q 017869 311 AKACSDAKIEGFPTWVINGQWRARPVRPR 339 (365)
Q Consensus 311 ~~~C~~~~I~gyPTw~inG~~y~G~~~l~ 339 (365)
.+++.+.||+|+||.+|||+.+.+.++.+
T Consensus 133 ~~~~~~~gi~gTPt~iInG~~~~~~~~~~ 161 (178)
T cd03019 133 EKLAKKYKITGVPAFVVNGKYVVNPSAIG 161 (178)
T ss_pred HHHHHHcCCCCCCeEEECCEEEEChhhcc
Confidence 45677889999999999999887777655
No 136
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.43 E-value=0.093 Score=55.93 Aligned_cols=80 Identities=19% Similarity=0.347 Sum_probs=49.3
Q ss_pred HHHhhhhc-ccceEEEccCCCHhHHHHHHH-Hhh-HhhccC-ce----EEcCCCCCcCccccHHHHHhcCCceeeEEEE-
Q 017869 257 LSLAKHLH-AIGAKMYGAFWCSHCLEQKQM-FGS-EAVKQL-NY----VECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 327 (365)
Q Consensus 257 ~~la~~L~-~~gak~YgApWCpHC~~qk~~-fgk-eA~~~l-~y----VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i- 327 (365)
.+++++=. .+-+-|| |.||=.||+.++. |.+ +..+++ ++ +|.+.+ +.++.++-++.|+-|-||+++
T Consensus 467 ~~la~~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~----~p~~~~lLk~~~~~G~P~~~ff 541 (569)
T COG4232 467 QALAEAKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAN----DPAITALLKRLGVFGVPTYLFF 541 (569)
T ss_pred HHHHhCCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCC----CHHHHHHHHHcCCCCCCEEEEE
Confidence 34444432 3334455 9999999999865 443 111222 22 444432 234788899999999999998
Q ss_pred --CCee---cCCCCChhhh
Q 017869 328 --NGQW---RARPVRPRQG 341 (365)
Q Consensus 328 --nG~~---y~G~~~l~~l 341 (365)
||++ .+|..+.+.+
T Consensus 542 ~~~g~e~~~l~gf~~a~~~ 560 (569)
T COG4232 542 GPQGSEPEILTGFLTADAF 560 (569)
T ss_pred CCCCCcCcCCcceecHHHH
Confidence 4533 5666666665
No 137
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.23 E-value=0.0085 Score=62.74 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=61.5
Q ss_pred hhhHHHhhhh-cccceEEEccCCCHhHHHHHHHHhhHhhccCceEEcCC-CCCcCccccHHHHHhcCCceeeEEEECCe-
Q 017869 254 PFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFP-DGYRKGTKIAKACSDAKIEGFPTWVINGQ- 330 (365)
Q Consensus 254 ~~~~~la~~L-~~~gak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~-~~~~~~~~~~~~C~~~~I~gyPTw~inG~- 330 (365)
+..++..+.+ +...+++|..+.||||.+..+.+.+.+. .-|.|+.+. |+ ...+++..++++.+.|+..+||+
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~-~~p~i~~~~id~----~~~~~~~~~~~v~~VP~~~i~~~~ 180 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMAL-LNPNISHTMIDG----ALFQDEVEALGIQGVPAVFLNGEE 180 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHH-hCCCceEEEEEc----hhCHHHHHhcCCcccCEEEECCcE
Confidence 3444544555 5678999999999999999999987443 223333321 11 12568889999999999999984
Q ss_pred ecCCCCChhhhhh
Q 017869 331 WRARPVRPRQGIW 343 (365)
Q Consensus 331 ~y~G~~~l~~l~~ 343 (365)
.++|..+.+++..
T Consensus 181 ~~~g~~~~~~~~~ 193 (515)
T TIGR03140 181 FHNGRMDLAELLE 193 (515)
T ss_pred EEecCCCHHHHHH
Confidence 5899999998754
No 138
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0046 Score=57.96 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=31.3
Q ss_pred HHHHHhcCCceeeEEEECCeecCCCCChhhhhhhhhhh
Q 017869 311 AKACSDAKIEGFPTWVINGQWRARPVRPRQGIWLSRNE 348 (365)
Q Consensus 311 ~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~~~~~~e 348 (365)
.++.++.||+|+||.++||+.++|..+.+++..+.+..
T Consensus 205 ~~~a~~~gv~gTPt~~v~~~~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLAQQLGVNGTPTFIVNGKLVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHhcCCCcCCeEEECCeeecCCCCHHHHHHHHHHh
Confidence 34566789999999999999999999999987655443
No 139
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.80 E-value=0.016 Score=51.69 Aligned_cols=72 Identities=8% Similarity=-0.006 Sum_probs=48.2
Q ss_pred ceEEEccC------CCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCC----ceeeEEEECCeecCCCC
Q 017869 267 GAKMYGAF------WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI----EGFPTWVINGQWRARPV 336 (365)
Q Consensus 267 gak~YgAp------WCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I----~gyPTw~inG~~y~G~~ 336 (365)
.+++|..+ +||+|++.|+++.+. .++|.|-|-+.. . +.+.++-+..+- ...|...|||+..-|..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~---~V~~~e~DVs~~-~-~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~d 75 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESF---RVKFDERDVSMD-S-GFREELRELLGAELKAVSLPRVFVDGRYLGGAE 75 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHC---CCcEEEEECCCC-H-HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHH
Confidence 37899999 999999999999873 566655543321 1 112232222233 68999999998888777
Q ss_pred Chhhhhh
Q 017869 337 RPRQGIW 343 (365)
Q Consensus 337 ~l~~l~~ 343 (365)
++.+|-.
T Consensus 76 el~~L~e 82 (147)
T cd03031 76 EVLRLNE 82 (147)
T ss_pred HHHHHHH
Confidence 7766543
No 140
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.76 E-value=0.028 Score=47.31 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=22.1
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgk 288 (365)
+.++..-.+.-+.+|.|.|||.|.++.+.+.+
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHHHH
Confidence 34444333444666679999999999887766
No 141
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.73 E-value=0.0098 Score=57.07 Aligned_cols=34 Identities=18% Similarity=0.032 Sum_probs=26.9
Q ss_pred cHHHHHhcCCceeeEEEE-C--Ce--ecCCCCChhhhhh
Q 017869 310 IAKACSDAKIEGFPTWVI-N--GQ--WRARPVRPRQGIW 343 (365)
Q Consensus 310 ~~~~C~~~~I~gyPTw~i-n--G~--~y~G~~~l~~l~~ 343 (365)
+.++.++.||+|+||+++ | |+ ..+|..+.++|.+
T Consensus 208 n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~ 246 (251)
T PRK11657 208 NQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAE 246 (251)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHH
Confidence 344667789999999998 5 54 6899999888855
No 142
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=95.63 E-value=0.039 Score=50.85 Aligned_cols=76 Identities=9% Similarity=-0.034 Sum_probs=45.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhc-cCce--EEcCCCCCc--Cc---cccHHHHHhcCC--ceeeEEEE---CCe----
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVK-QLNY--VECFPDGYR--KG---TKIAKACSDAKI--EGFPTWVI---NGQ---- 330 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~-~l~y--VeC~~~~~~--~~---~~~~~~C~~~~I--~gyPTw~i---nG~---- 330 (365)
+.+|-|.|||+|++..+.+.+-+.+ .+.. |..|.++.. .. ..+......+++ .++||-.+ ||+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 6677799999999998887762211 2322 444422100 00 012234556774 69999665 674
Q ss_pred ecCCCCChhhhhh
Q 017869 331 WRARPVRPRQGIW 343 (365)
Q Consensus 331 ~y~G~~~l~~l~~ 343 (365)
.+.|..+.+++.+
T Consensus 153 ~~~G~~~~~~L~~ 165 (181)
T PRK13728 153 LLQGATDAAGFMA 165 (181)
T ss_pred EEECCCCHHHHHH
Confidence 3689998888744
No 143
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.35 E-value=0.044 Score=62.63 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=50.2
Q ss_pred ccceEEEccCCCHhHHHHHHHHhhHh--hc--cCceEEc-----CCCCCcCc----------------cccHHHHHhcCC
Q 017869 265 AIGAKMYGAFWCSHCLEQKQMFGSEA--VK--QLNYVEC-----FPDGYRKG----------------TKIAKACSDAKI 319 (365)
Q Consensus 265 ~~gak~YgApWCpHC~~qk~~fgkeA--~~--~l~yVeC-----~~~~~~~~----------------~~~~~~C~~~~I 319 (365)
+.=+..|-|.|||+|++..+.+.+-+ .+ .+..|.+ |.++..+. +.+.+..++.+|
T Consensus 421 K~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V 500 (1057)
T PLN02919 421 KVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGV 500 (1057)
T ss_pred CEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcCC
Confidence 33455566999999999998887621 11 1333333 11110000 113356678899
Q ss_pred ceeeEEEE---CCe---ecCCCCChhhhhhhhhh
Q 017869 320 EGFPTWVI---NGQ---WRARPVRPRQGIWLSRN 347 (365)
Q Consensus 320 ~gyPTw~i---nG~---~y~G~~~l~~l~~~~~~ 347 (365)
+++||.++ ||+ ++.|....+++..+-++
T Consensus 501 ~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~ 534 (1057)
T PLN02919 501 SSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEA 534 (1057)
T ss_pred CccceEEEECCCCeEEEEEecccCHHHHHHHHHH
Confidence 99999877 674 57888887776554333
No 144
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.16 E-value=0.0076 Score=57.50 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=47.3
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh------hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE--CC--eecCCCCC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA------VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG--QWRARPVR 337 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA------~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i--nG--~~y~G~~~ 337 (365)
+.+|+|||||.|++.++.+..-| ..++.+||..-+ +-+--.+=+..-||.-- +| .+|+|.|+
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n--------pgLsGRF~vtaLptIYHvkDGeFrrysgaRd 114 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN--------PGLSGRFLVTALPTIYHVKDGEFRRYSGARD 114 (248)
T ss_pred HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec--------cccceeeEEEecceEEEeeccccccccCccc
Confidence 56788999999999999998733 112346666532 12223366778899543 77 57999999
Q ss_pred hhhhhh
Q 017869 338 PRQGIW 343 (365)
Q Consensus 338 l~~l~~ 343 (365)
-++++-
T Consensus 115 k~dfis 120 (248)
T KOG0913|consen 115 KNDFIS 120 (248)
T ss_pred chhHHH
Confidence 998644
No 145
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.16 E-value=0.06 Score=40.81 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=39.2
Q ss_pred EEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEEC-Cee
Q 017869 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQW 331 (365)
Q Consensus 269 k~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~in-G~~ 331 (365)
++|+.+|||+|.+.+..+.+ +......++.+... + ..+.-+.+.....|+++.+ |+.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~-~gl~~e~~~v~~~~--~---~~~~~~~np~~~vP~L~~~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLL-AGITVELREVELKN--K---PAEMLAASPKGTVPVLVLGNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHH-cCCCcEEEEeCCCC--C---CHHHHHHCCCCCCCEEEECCCcE
Confidence 68999999999999988875 22233446666532 1 2344455788899999985 644
No 146
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=94.94 E-value=0.095 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.3
Q ss_pred ceEEEccCCCHhHHHHHHHHhh
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgk 288 (365)
-+.+|.|+|||.|+++.+.+.+
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~ 98 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKS 98 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHH
Confidence 4556779999999999888876
No 147
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.71 E-value=0.054 Score=41.69 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=34.4
Q ss_pred ccCCCHhHHHHHHHHhhHh--hc-cCceEEcCCCCCcCccccHHHHHhcC--CceeeEEEE
Q 017869 272 GAFWCSHCLEQKQMFGSEA--VK-QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVI 327 (365)
Q Consensus 272 gApWCpHC~~qk~~fgkeA--~~-~l~yVeC~~~~~~~~~~~~~~C~~~~--I~gyPTw~i 327 (365)
.++|||+|++.++.+.+-+ .. .+..+.++..+. ..+.....+ +..+|+..+
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~p~~~~ 95 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE-----NPDLAAEFGVAVRSIPTLLL 95 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC-----ChHHHHHHhhhhccCCeEEE
Confidence 3999999999998887732 11 245555554311 235566677 899999885
No 148
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=94.63 E-value=0.057 Score=47.98 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=18.2
Q ss_pred cceEEEccCCCHhHHHHHHHHhh
Q 017869 266 IGAKMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 266 ~gak~YgApWCpHC~~qk~~fgk 288 (365)
.=+..|.|.|||-|++..+.+.+
T Consensus 27 ~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 27 VLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEEEECCCChhHHHHHHHHHH
Confidence 33556679999999999887765
No 149
>PF13728 TraF: F plasmid transfer operon protein
Probab=94.28 E-value=0.19 Score=47.34 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=54.7
Q ss_pred HHhhhhcccceEEEccCCCHhHHHHHHHHhhHhh-ccCc--eEEcCCCC---CcCccccHHHHHhcCCceeeEEEE---C
Q 017869 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV-KQLN--YVECFPDG---YRKGTKIAKACSDAKIEGFPTWVI---N 328 (365)
Q Consensus 258 ~la~~L~~~gak~YgApWCpHC~~qk~~fgkeA~-~~l~--yVeC~~~~---~~~~~~~~~~C~~~~I~gyPTw~i---n 328 (365)
.+.+.=.+-|..||+...||+|+.|.+.+..-+. -.+. +|..|..+ ..+......+.++.||+.+|+..+ +
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 3333345568889999999999999987765221 1233 45554211 111011356788899999999877 3
Q ss_pred C-ee---cCCCCChhhhhh
Q 017869 329 G-QW---RARPVRPRQGIW 343 (365)
Q Consensus 329 G-~~---y~G~~~l~~l~~ 343 (365)
+ +. -.|..+.++|..
T Consensus 194 ~~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 194 TKKWYPVSQGFMSLDELED 212 (215)
T ss_pred CCeEEEEeeecCCHHHHHH
Confidence 4 33 378888888753
No 150
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=94.11 E-value=0.092 Score=44.89 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=44.8
Q ss_pred HHHhhhhcccceEEEccC-CCHhHHHHHHHHhhHh----hccCceEEcCCCCCcCc---------------cccHHHHHh
Q 017869 257 LSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGSEA----VKQLNYVECFPDGYRKG---------------TKIAKACSD 316 (365)
Q Consensus 257 ~~la~~L~~~gak~YgAp-WCpHC~~qk~~fgkeA----~~~l~yVeC~~~~~~~~---------------~~~~~~C~~ 316 (365)
..+++--.+.-+.+|-+. |||+|+++.+.+.+-+ .+.+..|-+..+....- ....++.++
T Consensus 21 ~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 100 (146)
T PF08534_consen 21 VSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKA 100 (146)
T ss_dssp EEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHH
T ss_pred ecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHH
Confidence 455552233335555578 9999999998776621 12244444421110000 113466777
Q ss_pred cCCc---------eeeEEEE---CCe---ecCCCCC
Q 017869 317 AKIE---------GFPTWVI---NGQ---WRARPVR 337 (365)
Q Consensus 317 ~~I~---------gyPTw~i---nG~---~y~G~~~ 337 (365)
.+++ ++|++.+ ||+ ...|..+
T Consensus 101 ~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 101 LGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred hCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 8988 9999876 674 3445444
No 151
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=93.78 E-value=0.058 Score=48.66 Aligned_cols=63 Identities=21% Similarity=0.440 Sum_probs=38.9
Q ss_pred ccceEEEccCCCHhHHHH----HHHHhhHh--hccCc--eEEcCCCCCc-----------------CccccHHHHHhcCC
Q 017869 265 AIGAKMYGAFWCSHCLEQ----KQMFGSEA--VKQLN--YVECFPDGYR-----------------KGTKIAKACSDAKI 319 (365)
Q Consensus 265 ~~gak~YgApWCpHC~~q----k~~fgkeA--~~~l~--yVeC~~~~~~-----------------~~~~~~~~C~~~~I 319 (365)
++.+.+|+|.|||-|++. |+.|++-. .+.+. +|.=|.++.. .+.+..+++++++|
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v 113 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEV 113 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhccc
Confidence 556788999999999986 45555411 11121 2222211100 00235688999999
Q ss_pred ceeeEEEE
Q 017869 320 EGFPTWVI 327 (365)
Q Consensus 320 ~gyPTw~i 327 (365)
++.|+.++
T Consensus 114 ~~iP~l~i 121 (157)
T KOG2501|consen 114 KGIPALVI 121 (157)
T ss_pred CcCceeEE
Confidence 99999998
No 152
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.17 Score=45.93 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=53.6
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhh-----Hhhcc-CceEEcC-----C----CCCc-CccccHHHHHhcCCc
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS-----EAVKQ-LNYVECF-----P----DGYR-KGTKIAKACSDAKIE 320 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgk-----eA~~~-l~yVeC~-----~----~~~~-~~~~~~~~C~~~~I~ 320 (365)
...++...+-=..||+.+.|++|.++|+..-. |+... +..++.+ | +|.. ......++++..+++
T Consensus 35 ~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr 114 (182)
T COG2143 35 NKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR 114 (182)
T ss_pred HHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence 44455555666889999999999999866533 22111 2222221 1 1111 112245899999999
Q ss_pred eeeEEEE---CCe---ecCCCCChhhh
Q 017869 321 GFPTWVI---NGQ---WRARPVRPRQG 341 (365)
Q Consensus 321 gyPTw~i---nG~---~y~G~~~l~~l 341 (365)
++||+++ +|+ ..+|=...++.
T Consensus 115 stPtfvFfdk~Gk~Il~lPGY~ppe~F 141 (182)
T COG2143 115 STPTFVFFDKTGKTILELPGYMPPEQF 141 (182)
T ss_pred cCceEEEEcCCCCEEEecCCCCCHHHH
Confidence 9999998 454 36888888774
No 153
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=93.56 E-value=0.24 Score=35.45 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=39.0
Q ss_pred EEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeec
Q 017869 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWR 332 (365)
Q Consensus 269 k~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y 332 (365)
++|+.++||+|.+.+..+... ......++++.+.... .+.=+.++-...|++..+|+..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~-~i~~~~~~~~~~~~~~----~~~~~~~~~~~~P~l~~~~~~~ 60 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK-GLPYELVPVDLGEGEQ----EEFLALNPLGKVPVLEDGGLVL 60 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc-CCCcEEEEeCCCCCCC----HHHHhcCCCCCCCEEEECCEEE
Confidence 689999999999999888762 2223346665433211 1223346777899999988654
No 154
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=93.45 E-value=0.19 Score=37.48 Aligned_cols=58 Identities=9% Similarity=0.116 Sum_probs=38.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEE-CCe
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQ 330 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i-nG~ 330 (365)
+++|+.++||+|.+.+-.+... .++| ++++..+... +..+.-+.+.-...|++++ ||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~---~l~~~~~~v~~~~~~~--~~~~~~~~~p~~~vP~l~~~~~~ 61 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEK---GIDVPLVTVDLAAGEQ--RSPEFLAKNPAGTVPVLELDDGT 61 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHc---CCCceEEEeecccCcc--CCHHHHhhCCCCCCCEEEeCCCC
Confidence 3799999999999999988752 4554 6665422111 1234444566778899998 443
No 155
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=93.31 E-value=0.088 Score=44.21 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=24.1
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECF 300 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~ 300 (365)
+++|+.++||+|+++++.+.+. .++|.+-+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~---~i~~~~id 30 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH---GVDYTAID 30 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc---CCceEEec
Confidence 4799999999999999999873 56664443
No 156
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=93.31 E-value=0.096 Score=43.77 Aligned_cols=47 Identities=13% Similarity=0.302 Sum_probs=31.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAK 318 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~ 318 (365)
+++|+.|+|+.|+++++.+.+. .++| +|...+...+ +.-.++.++.|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~---~i~~~~~di~~~p~s~-~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR---GVAYTFHDYRKDGLDA-ATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc---CCCeEEEecccCCCCH-HHHHHHHHHhC
Confidence 5799999999999999999863 3443 4443333222 22456777766
No 157
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=93.28 E-value=0.17 Score=41.57 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=20.9
Q ss_pred HHHhhhhcccceEEEccC-CCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak~YgAp-WCpHC~~qk~~fgk 288 (365)
+.|.....+.-+.+|.+. |||+|+++.+.+.+
T Consensus 18 ~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~ 50 (124)
T PF00578_consen 18 VSLSDLKGKPVVLFFWPTAWCPFCQAELPELNE 50 (124)
T ss_dssp EEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred EEHHHHCCCcEEEEEeCccCccccccchhHHHH
Confidence 444444334445555566 99999999877766
No 158
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=93.24 E-value=0.26 Score=37.08 Aligned_cols=61 Identities=16% Similarity=-0.062 Sum_probs=40.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~ 331 (365)
+++|+.++||+|.+.+-.+... ......++++..+.. .+.++.-+.+.....|+++.+|..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~-gi~~e~~~i~~~~~~--~~~~~~~~~~p~~~vP~l~~~~~~ 61 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKAL-GLELNLKEVNLMKGE--HLKPEFLKLNPQHTVPTLVDNGFV 61 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHc-CCCCEEEEecCccCC--cCCHHHHhhCcCCCCCEEEECCEE
Confidence 4789999999999999888752 223334666642211 123455566777789999887743
No 159
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=93.19 E-value=0.44 Score=42.04 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhhh-cC-CCCCCCCCccccccccccccccccCCChhHHHHHHHHHHHHHHHH
Q 017869 68 GIGGVGFLETTYLSYLKL-TN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (365)
Q Consensus 68 ~la~iGl~~S~yLt~~k~-~~-~~~~C~i~~~sC~~Vl~S~ya~lfGiP~sl~Gl~~Y~~v~~lal~ 132 (365)
.+++.|+.++.|=.+... +. ..+.|. ..+|.++- | .++|++.+.+.+++|..++++.+.
T Consensus 70 ~~a~~G~~iA~~hv~lQ~~p~~~~~~Cg--~g~Ca~~~---~-~fl~lsiP~wSl~aF~~i~~l~~~ 130 (135)
T PRK00611 70 PLALVGFGIAIYQVCLQEIPGMTLDICG--RVSCSTKL---F-LFGFITMPMASAAAFCAIACLLVL 130 (135)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCC--CCCCcccc---h-hcccccHHHHHHHHHHHHHHHHHH
Confidence 458899999999877664 33 345786 35899983 5 789999999999999988766654
No 160
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=92.89 E-value=0.029 Score=48.36 Aligned_cols=58 Identities=21% Similarity=0.426 Sum_probs=31.1
Q ss_pred cceEEE------ccCCCHhHHHHHHHHhhHhhcc----CceEEcC--C-CCCcCccccHHHHH---hcCCceeeEEEE
Q 017869 266 IGAKMY------GAFWCSHCLEQKQMFGSEAVKQ----LNYVECF--P-DGYRKGTKIAKACS---DAKIEGFPTWVI 327 (365)
Q Consensus 266 ~gak~Y------gApWCpHC~~qk~~fgkeA~~~----l~yVeC~--~-~~~~~~~~~~~~C~---~~~I~gyPTw~i 327 (365)
+-+.|+ |-+|||.|.+.++...+ ++.. ..+|.|. . ..|++. ...-+ +.++++.||++-
T Consensus 22 ~fl~F~gs~d~~g~sWCPDC~~aep~v~~-~f~~~~~~~~lv~v~VG~r~~Wkdp---~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 22 LFLLFTGSKDETGQSWCPDCVAAEPVVEK-AFKKAPENARLVYVEVGDRPEWKDP---NNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp EEEEEE--B-TTS-BSSHHHHHHHHHHHH-HHHH-STTEEEEEEE---HHHHC-T---TSHHHH--CC---SSSEEEE
T ss_pred EEEEEEccCCCCCCcccHHHHHHHHHHHH-HHHhCCCCceEEEEEcCCHHHhCCC---CCCceEcceeeeeecceEEE
Confidence 345566 44799999999988876 2332 2345552 1 223221 11222 378999999886
No 161
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=92.83 E-value=0.3 Score=36.75 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=36.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEEC-Ceec
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQWR 332 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~in-G~~y 332 (365)
++.|+.++||+|.+.+..+.. +.++| ++.+.+.. ...-+.++-...|+.+.+ |+..
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~---~gl~~~~~~~~~~~~------~~~~~~~~~~~vP~L~~~~~~~l 59 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGL---KNIPVEQIILQNDDE------ATPIRMIGAKQVPILEKDDGSFM 59 (71)
T ss_pred CceEecCCCcHhHHHHHHHHH---cCCCeEEEECCCCch------HHHHHhcCCCccCEEEeCCCeEe
Confidence 368889999999999999886 24555 44543211 111234555678999886 6443
No 162
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=92.78 E-value=0.14 Score=43.30 Aligned_cols=63 Identities=19% Similarity=0.348 Sum_probs=36.9
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEE-ECCeecCCC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWV-INGQWRARP 335 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~-inG~~y~G~ 335 (365)
+++|+.++||+|+++++.+.+. .++| ++...+.... +.-.++....|. ++-.++ -+|+.|...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~---~i~~~~idi~~~~~~~-~el~~l~~~~~~-~~~~lin~~~~~~k~l 66 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN---GIEYQFIDIGEDGPTR-EELLDILSLLED-GIDPLLNTRGQSYRAL 66 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc---CCceEEEecCCChhhH-HHHHHHHHHcCC-CHHHheeCCCcchhhC
Confidence 4799999999999999999873 4554 4443322111 223445665553 221222 256666544
No 163
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=92.69 E-value=0.44 Score=35.66 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=38.7
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~ 331 (365)
+++|+.++||.|++.+..+.+. .++| ++.+.+ ++ ..+.-+.+.....|+++.+|..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~---gi~~~~~~v~~~--~~---~~~~~~~~p~~~vP~l~~~~~~ 58 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEK---GVSVEIIDVDPD--NP---PEDLAELNPYGTVPTLVDRDLV 58 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHc---CCccEEEEcCCC--CC---CHHHHhhCCCCCCCEEEECCEE
Confidence 4789999999999999988762 4544 444433 11 2344555777899999877743
No 164
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.66 E-value=0.12 Score=42.64 Aligned_cols=30 Identities=17% Similarity=0.413 Sum_probs=23.7
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECF 300 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~ 300 (365)
+++|+.++||+|+++++.+.+. .++| ++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~---~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH---GIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc---CCCcEEEeec
Confidence 4799999999999999999873 4554 5544
No 165
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=92.11 E-value=0.47 Score=36.20 Aligned_cols=53 Identities=9% Similarity=0.166 Sum_probs=36.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEEC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 328 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~in 328 (365)
+++|+.+.||+|++.+..+.. +.++|-+.+-+... ..+ -+.++-...|+.+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~---~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDY---HGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHH---CCCceEEEECCchh----HHH-HHHhCCCccCEEEEC
Confidence 789999999999999988875 25665333222111 123 245777889999987
No 166
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=91.56 E-value=0.13 Score=44.71 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=36.5
Q ss_pred chhhHHHhhhhcccceEEEccCCCHhHHHHHHHHhhHh--hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE
Q 017869 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (365)
Q Consensus 253 ~~~~~~la~~L~~~gak~YgApWCpHC~~qk~~fgkeA--~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i 327 (365)
......++..-++..+..++-+|||.|...-+.+.|-+ ...+ -+..-..+.+... ..+ -..+|.+..||.++
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i-~~~~i~rd~~~el-~~~-~lt~g~~~IP~~I~ 103 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNI-EVRIILRDENKEL-MDQ-YLTNGGRSIPTFIF 103 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTE-EEEEE-HHHHHHH-TTT-TTT-SS--SSEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCC-eEEEEEecCChhH-HHH-HHhCCCeecCEEEE
Confidence 34445666666777899999999999999999999832 1122 1222111111111 112 22289999999998
No 167
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=90.86 E-value=0.25 Score=42.87 Aligned_cols=26 Identities=12% Similarity=0.460 Sum_probs=22.0
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY 296 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y 296 (365)
+++|+.|+||+|+++++.+.+. .++|
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~---gi~~ 27 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH---DIPF 27 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc---CCCc
Confidence 6899999999999999999863 4554
No 168
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=90.80 E-value=0.52 Score=39.83 Aligned_cols=53 Identities=19% Similarity=0.326 Sum_probs=31.1
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh--h--ccCceEEcCCCCCcCccccHHHHHhcCCceeeE
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPT 324 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA--~--~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPT 324 (365)
+.||-+.|||.|+++.+.+.+.. . ..+..|-+..+... ...+..++.++. ||.
T Consensus 28 l~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~---~~~~~~~~~~~~-~p~ 84 (149)
T cd02970 28 VVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE---KLEAFDKGKFLP-FPV 84 (149)
T ss_pred EEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH---HHHHHHHhcCCC-CeE
Confidence 45556999999999988877621 2 22444444433211 123456667764 674
No 169
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=90.61 E-value=0.53 Score=41.37 Aligned_cols=38 Identities=16% Similarity=0.025 Sum_probs=31.5
Q ss_pred cHHHHHhcCCceeeEEEE--CCe---ecCCCCChhhhhhhhhh
Q 017869 310 IAKACSDAKIEGFPTWVI--NGQ---WRARPVRPRQGIWLSRN 347 (365)
Q Consensus 310 ~~~~C~~~~I~gyPTw~i--nG~---~y~G~~~l~~l~~~~~~ 347 (365)
+.+++.++||++.||+++ ||+ .+.|.++.+++..+-++
T Consensus 80 ~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~ 122 (132)
T PRK11509 80 SEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRG 122 (132)
T ss_pred CHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHH
Confidence 368999999999999998 885 58999999998665443
No 170
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=90.42 E-value=0.35 Score=43.92 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=39.3
Q ss_pred chhhHHHhhhhcccceEEEccCCCHhHHHHHH-HHhhHh-hccCc--e--EEcCCCCCcCccccHHHHHh--------cC
Q 017869 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEA-VKQLN--Y--VECFPDGYRKGTKIAKACSD--------AK 318 (365)
Q Consensus 253 ~~~~~~la~~L~~~gak~YgApWCpHC~~qk~-~fgkeA-~~~l~--y--VeC~~~~~~~~~~~~~~C~~--------~~ 318 (365)
+++..+.|+...+.=...+|..||..|+.+.+ .|.+.. ++.|+ | |..|.+. .+++-.. .|
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree------~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE------RPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-------HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc------CccHHHHHHHHHHHhcC
Confidence 35668888888877677788999999999874 566522 23332 3 4455443 2232222 27
Q ss_pred CceeeEEEE---CCee
Q 017869 319 IEGFPTWVI---NGQW 331 (365)
Q Consensus 319 I~gyPTw~i---nG~~ 331 (365)
..|+|+-++ +|+.
T Consensus 100 ~gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGKP 115 (163)
T ss_dssp ---SSEEEEE-TTS-E
T ss_pred CCCCCceEEECCCCCe
Confidence 889999887 6643
No 171
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=90.20 E-value=0.27 Score=43.76 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=29.2
Q ss_pred cHHHHHhcCCceeeEEEECCeecCCCCChhhhhh
Q 017869 310 IAKACSDAKIEGFPTWVINGQWRARPVRPRQGIW 343 (365)
Q Consensus 310 ~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~~ 343 (365)
..+...+.||.|.||++|||+.+.|.+.++.+.+
T Consensus 156 ~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~~ 189 (192)
T cd03022 156 NTEEAIARGVFGVPTFVVDGEMFWGQDRLDMLEE 189 (192)
T ss_pred HHHHHHHcCCCcCCeEEECCeeecccccHHHHHH
Confidence 3455778899999999999999999999998654
No 172
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=90.17 E-value=1.4 Score=39.00 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHhhh-c---CCCCCCCCCccccccccccccccccCCChhHHHHHHHHHHHHHHHH
Q 017869 67 AGIGGVGFLETTYLSYLKL-T---NSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (365)
Q Consensus 67 ~~la~iGl~~S~yLt~~k~-~---~~~~~C~i~~~sC~~Vl~S~ya~lfGiP~sl~Gl~~Y~~v~~lal~ 132 (365)
+.+++.|+.+++|-.+.+. + +..+.|. ..+|.++.-.+ +.|++.+.+.+++|.+++++.+.
T Consensus 70 ~l~a~~G~~iA~~h~~lq~~p~~~~~~~~Cg--~~~Ca~~~~~~---~g~lsiP~wSl~~F~~i~~l~~~ 134 (139)
T PRK03113 70 LPISSIGACISLYHYAIQKIPFFSAAAASCG--RVPCTGEYINW---FGFVTIPFLALIAFITIAVCSFI 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCCCCC--CCChhhhhHHH---hccCcHHHHHHHHHHHHHHHHHH
Confidence 4567899999998877654 3 2235776 34899855432 45699999999999988877655
No 173
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=89.59 E-value=0.99 Score=37.94 Aligned_cols=25 Identities=8% Similarity=-0.085 Sum_probs=17.7
Q ss_pred cccceEEEc-cCCCHhHHHHHHHHhh
Q 017869 264 HAIGAKMYG-AFWCSHCLEQKQMFGS 288 (365)
Q Consensus 264 ~~~gak~Yg-ApWCpHC~~qk~~fgk 288 (365)
.+.-+.+|. +.|||.|.++.+.+.+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~ 48 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRD 48 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHH
Confidence 334455554 6899999998877765
No 174
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=89.49 E-value=1 Score=34.66 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=36.8
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEEC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 328 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~in 328 (365)
+++|+.++||+|.+.+..+.+. .++| ++.+++. . +..+.-+.++-...|+.+.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~---gi~y~~~~v~~~~-~---~~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL---ELDVILYPCPKGS-P---KRDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc---CCcEEEEECCCCh-H---HHHHHHHhCCCCcccEEEeC
Confidence 5799999999999999888762 5666 4444221 1 12343345677789999773
No 175
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=89.45 E-value=0.93 Score=40.07 Aligned_cols=25 Identities=8% Similarity=0.019 Sum_probs=19.7
Q ss_pred cccceEEEccCCCHhHHHHHHHHhh
Q 017869 264 HAIGAKMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 264 ~~~gak~YgApWCpHC~~qk~~fgk 288 (365)
.+.-+.+|.+.|||+|.++.+.+.+
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~ 49 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNR 49 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHH
Confidence 3455777889999999988777765
No 176
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=89.29 E-value=1.1 Score=34.22 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=41.3
Q ss_pred EEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecC
Q 017869 270 MYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRA 333 (365)
Q Consensus 270 ~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~ 333 (365)
+|+.++||+|++..-.++.. .-...++++++.+. ..+....+.-.-.|+.+.||+.+.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-~i~~~~~~v~~~~~-----~~~~~~~~p~~~vPvL~~~g~~l~ 58 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-GIPYELVPVDPEEK-----RPEFLKLNPKGKVPVLVDDGEVLT 58 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-TEEEEEEEEBTTST-----SHHHHHHSTTSBSSEEEETTEEEE
T ss_pred CCCcCCChHHHHHHHHHHHc-CCeEEEeccCcccc-----hhHHHhhcccccceEEEECCEEEe
Confidence 58899999999999888852 22233466665431 346667788889999998887553
No 177
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=88.38 E-value=2.2 Score=37.98 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=20.1
Q ss_pred HHHhhhhcccceEEEc-cCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak~Yg-ApWCpHC~~qk~~fgk 288 (365)
+.|.....+.-+.+|. +.|||+|..+.+.+.+
T Consensus 22 ~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 22 ISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred EehHHhCCCEEEEEEECCCCCCcCHHHHHHHHH
Confidence 3443332333344444 8899999998877765
No 178
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=88.32 E-value=1.5 Score=34.92 Aligned_cols=55 Identities=11% Similarity=0.222 Sum_probs=39.0
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEEC-Ce
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQ 330 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~in-G~ 330 (365)
+++|+.+.||+|.+.+-.+... .++| ++.+.+. . ..+.-+.+.-...|+++++ |+
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~---gl~~~~~~v~~~~--~---~~~~~~~np~~~vPvL~~~~g~ 76 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK---NIPHEVININLKD--K---PDWFLEKNPQGKVPALEIDEGK 76 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc---CCCCeEEEeCCCC--C---cHHHHhhCCCCCcCEEEECCCC
Confidence 8999999999999999888762 4544 5555332 1 2234455777889999997 54
No 179
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=88.31 E-value=0.6 Score=39.28 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=30.2
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAK 318 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~ 318 (365)
+++|+.++|+.|+++++.+.+. .++| ++...+.... +.-.++.+..|
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~---gi~~~~idi~~~~~~~-~el~~~~~~~~ 50 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH---QIPFEERNLFKQPLTK-EELKEILSLTE 50 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---CCceEEEecCCCcchH-HHHHHHHHHhc
Confidence 6899999999999999999873 3444 5543332211 22344555554
No 180
>PRK12559 transcriptional regulator Spx; Provisional
Probab=88.31 E-value=0.53 Score=40.93 Aligned_cols=46 Identities=13% Similarity=0.308 Sum_probs=29.6
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhc
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDA 317 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~ 317 (365)
+++|+.|+|+.|+++++.+.+. .++| ++...+.... +.-.++++..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~---gi~~~~~di~~~~~s~-~el~~~l~~~ 49 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN---QIDYTEKNIVSNSMTV-DELKSILRLT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc---CCCeEEEEeeCCcCCH-HHHHHHHHHc
Confidence 6799999999999999999863 4554 4443333222 1234455543
No 181
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=88.27 E-value=1.7 Score=32.30 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=37.9
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~ 331 (365)
+++|+.+.||+|.+.+-.+.. + .++| ++.+...... +..+.-+.+.-...|+++.+|+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~-~--~~~~~~~~i~~~~~~~--~~~~~~~~~p~~~vP~l~~~~~~ 61 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLAL-L--GIPYEWVEVDILKGET--RTPEFLALNPNGEVPVLELDGRV 61 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHH-c--CCCcEEEEecCCCccc--CCHHHHHhCCCCCCCEEEECCEE
Confidence 368999999999999988875 2 3443 5554321111 12333445666788999988754
No 182
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=87.90 E-value=0.62 Score=39.66 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=21.8
Q ss_pred HHHhhhhcccceEEEccCC-CHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApW-CpHC~~qk~~fgk 288 (365)
+.|+..-.+.-+.+|.+-| ||+|+++.+.+.+
T Consensus 19 ~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~ 51 (143)
T cd03014 19 VSLADFAGKVKVISVFPSIDTPVCATQTKRFNK 51 (143)
T ss_pred EeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHH
Confidence 5555533444555555766 7999999988877
No 183
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=87.77 E-value=0.41 Score=42.47 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=29.6
Q ss_pred cHHHHHhcCCceeeEEEECCe-ecCCCCChhhhhh
Q 017869 310 IAKACSDAKIEGFPTWVINGQ-WRARPVRPRQGIW 343 (365)
Q Consensus 310 ~~~~C~~~~I~gyPTw~inG~-~y~G~~~l~~l~~ 343 (365)
..+...+.||.|+||+++||+ .+.|.+.++++.+
T Consensus 156 ~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~~ 190 (193)
T PF01323_consen 156 DTAEARQLGVFGVPTFVVNGKYRFFGADRLDELED 190 (193)
T ss_dssp HHHHHHHTTCSSSSEEEETTTEEEESCSSHHHHHH
T ss_pred HHHHHHHcCCcccCEEEECCEEEEECCCCHHHHHH
Confidence 445678899999999999998 8999999999765
No 184
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=87.27 E-value=2.2 Score=36.24 Aligned_cols=85 Identities=11% Similarity=0.024 Sum_probs=53.9
Q ss_pred hhhHHHhhhhcccceEEEccC----CCHhHHHHH--HHHhhHhhc-cCceEEcCCCCCcCccccHHHHHhcCCceeeEEE
Q 017869 254 PFALSLAKHLHAIGAKMYGAF----WCSHCLEQK--QMFGSEAVK-QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV 326 (365)
Q Consensus 254 ~~~~~la~~L~~~gak~YgAp----WCpHC~~qk--~~fgkeA~~-~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~ 326 (365)
.+.++.|++-.+.-+.++.++ ||..|++.- +.+.+ -.+ +.-.+-+|-++. .-.+++...++++||++.
T Consensus 7 ~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~-~ln~~fv~w~~dv~~~----eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIE-YINTRMLFWACSVAKP----EGYRVSQALRERTYPFLA 81 (116)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHH-HHHcCEEEEEEecCCh----HHHHHHHHhCCCCCCEEE
Confidence 455677777777666666688 999995442 22222 011 111234443321 135789999999999988
Q ss_pred E----CC-----eecCCCCChhhhhh
Q 017869 327 I----NG-----QWRARPVRPRQGIW 343 (365)
Q Consensus 327 i----nG-----~~y~G~~~l~~l~~ 343 (365)
+ ++ .+.+|..+.+++..
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~ 107 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLIN 107 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHH
Confidence 7 43 25899999999754
No 185
>PTZ00056 glutathione peroxidase; Provisional
Probab=87.13 E-value=2 Score=39.62 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=22.2
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgk 288 (365)
+.+...-.+.=+..|-|.|||.|.+..+.+.+
T Consensus 32 vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~ 63 (199)
T PTZ00056 32 VPMSSLKNKVLMITNSASKCGLTKKHVDQMNR 63 (199)
T ss_pred EeHHHhCCCEEEEEEECCCCCChHHHHHHHHH
Confidence 44544333444677889999999987776665
No 186
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=86.72 E-value=1.6 Score=40.35 Aligned_cols=80 Identities=6% Similarity=-0.081 Sum_probs=50.9
Q ss_pred cccceEEEccCCCHhHHHHHHHHhhHhhccCce--------EEcCCCCC-------------cCc--------cccHHHH
Q 017869 264 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--------VECFPDGY-------------RKG--------TKIAKAC 314 (365)
Q Consensus 264 ~~~gak~YgApWCpHC~~qk~~fgkeA~~~l~y--------VeC~~~~~-------------~~~--------~~~~~~C 314 (365)
.++.+.-|-|-||+.|..-++++.+-+.+.++. |+-+.+.+ ..+ +.+....
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 556677777999999999999988744334432 44332100 000 1133456
Q ss_pred HhcCCceeeEE--EE--CCe---ecCCCCChhhhhh
Q 017869 315 SDAKIEGFPTW--VI--NGQ---WRARPVRPRQGIW 343 (365)
Q Consensus 315 ~~~~I~gyPTw--~i--nG~---~y~G~~~l~~l~~ 343 (365)
.+.|+++.|+- +| +|+ ++.|..+.+++..
T Consensus 139 ~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 139 NAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred HhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 68899999654 56 464 6899888887644
No 187
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=85.46 E-value=1 Score=40.18 Aligned_cols=64 Identities=16% Similarity=0.052 Sum_probs=35.1
Q ss_pred HHHhhhhcccceEEEccCC-CHhHHHHHHHHhhHhh--ccCceEEcCCCCCcCccccHHHHHhcCCceee
Q 017869 257 LSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFP 323 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApW-CpHC~~qk~~fgkeA~--~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyP 323 (365)
+.++.--.+.-+..|.+.| ||.|.++.+.+.+.+. +.+..+-...|.. ..+.++.++.++..+|
T Consensus 37 v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~---~~~~~f~~~~~~~~~~ 103 (167)
T PRK00522 37 VSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLP---FAQKRFCGAEGLENVI 103 (167)
T ss_pred EehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCH---HHHHHHHHhCCCCCce
Confidence 4555432333455566777 9999999988877321 2222222222211 1245667777766444
No 188
>PRK13190 putative peroxiredoxin; Provisional
Probab=85.46 E-value=4 Score=37.70 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=21.6
Q ss_pred HHHhhhhcccceE-EEccCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAK-MYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak-~YgApWCpHC~~qk~~fgk 288 (365)
+.+...-.+.-+. +|=+.|||.|......|.+
T Consensus 20 v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~ 52 (202)
T PRK13190 20 IDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSR 52 (202)
T ss_pred EeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence 5555543333333 5789999999998777765
No 189
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=85.35 E-value=4.1 Score=39.41 Aligned_cols=80 Identities=9% Similarity=-0.076 Sum_probs=50.2
Q ss_pred cccceEEEccCCCHhHHHHHHHHhhHh-hccCce--EEcCCCC---CcCccccHHHHHhcCCceeeEEEE---C-Cee--
Q 017869 264 HAIGAKMYGAFWCSHCLEQKQMFGSEA-VKQLNY--VECFPDG---YRKGTKIAKACSDAKIEGFPTWVI---N-GQW-- 331 (365)
Q Consensus 264 ~~~gak~YgApWCpHC~~qk~~fgkeA-~~~l~y--VeC~~~~---~~~~~~~~~~C~~~~I~gyPTw~i---n-G~~-- 331 (365)
++-|..||+..-||+|+++.+....-+ .-.+.. |..|..+ ..+........++.||+-+|+..+ + ++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 446888899999999999998776522 112443 4443211 101112234567899999999876 3 333
Q ss_pred -cCCCCChhhhhh
Q 017869 332 -RARPVRPRQGIW 343 (365)
Q Consensus 332 -y~G~~~l~~l~~ 343 (365)
-.|..+.++|..
T Consensus 223 v~~G~iS~deL~~ 235 (248)
T PRK13703 223 LSYGFITQDDLAK 235 (248)
T ss_pred EeeccCCHHHHHH
Confidence 368888888743
No 190
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=85.15 E-value=1.5 Score=37.25 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=21.6
Q ss_pred hHHHhhhhc-ccceE-EEccCCCHhHHHHHHHHhh
Q 017869 256 ALSLAKHLH-AIGAK-MYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 256 ~~~la~~L~-~~gak-~YgApWCpHC~~qk~~fgk 288 (365)
.+.+..... +.-+. ||.+.|||.|.++.+.+.+
T Consensus 19 ~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 19 EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHH
Confidence 355555433 33343 4558999999999877765
No 191
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.15 E-value=1.2 Score=35.84 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=44.9
Q ss_pred EEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCc--------cccHHHHHhcCCceeeEEEE-CCeecCC
Q 017869 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG--------TKIAKACSDAKIEGFPTWVI-NGQWRAR 334 (365)
Q Consensus 269 k~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~--------~~~~~~C~~~~I~gyPTw~i-nG~~y~G 334 (365)
++|||--||.|...++.+.+. --+.+|||......|=+ .+..+.-+.+|-=|.|.+.. ||+..-|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 799999999999999999984 22445688854332211 12345567788889999998 4555433
No 192
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.07 E-value=1.5 Score=38.08 Aligned_cols=68 Identities=19% Similarity=0.377 Sum_probs=38.9
Q ss_pred cceEEEcc-------CCCHhHHHHHHHHhhHhhc----cCceEEcCC---CCCcCccccHHHHHhcCC-ceeeEEEE-C-
Q 017869 266 IGAKMYGA-------FWCSHCLEQKQMFGSEAVK----QLNYVECFP---DGYRKGTKIAKACSDAKI-EGFPTWVI-N- 328 (365)
Q Consensus 266 ~gak~YgA-------pWCpHC~~qk~~fgkeA~~----~l~yVeC~~---~~~~~~~~~~~~C~~~~I-~gyPTw~i-n- 328 (365)
+.+.|+|. +|||.|.++.+.+.+ +.+ +..+|-|+- ..|.. +....=.+-++ .+.||++- +
T Consensus 28 ifvlF~gskd~~tGqSWCPdCV~AEPvi~~-alk~ap~~~~~v~v~VG~rp~Wk~--p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 28 IFVLFLGSKDDTTGQSWCPDCVAAEPVINE-ALKHAPEDVHFVHVYVGNRPYWKD--PANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred EEEEEecccCCCCCCcCCchHHHhhHHHHH-HHHhCCCceEEEEEEecCCCcccC--CCCccccCCCceeecceeeEEcC
Confidence 66777765 499999999999986 333 334455531 11211 11122233456 89999775 3
Q ss_pred -CeecCCCC
Q 017869 329 -GQWRARPV 336 (365)
Q Consensus 329 -G~~y~G~~ 336 (365)
+++..|.|
T Consensus 105 ~~~rL~~~q 113 (128)
T KOG3425|consen 105 QPQRLDGLQ 113 (128)
T ss_pred ccccchHhH
Confidence 24444443
No 193
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=84.87 E-value=4.6 Score=39.25 Aligned_cols=80 Identities=5% Similarity=-0.080 Sum_probs=51.4
Q ss_pred cccceEEEccCCCHhHHHHHHHHhhHhh-ccCc--eEEcCCCCC---cCccccHHHHHhcCCceeeEEEE---C-Cee--
Q 017869 264 HAIGAKMYGAFWCSHCLEQKQMFGSEAV-KQLN--YVECFPDGY---RKGTKIAKACSDAKIEGFPTWVI---N-GQW-- 331 (365)
Q Consensus 264 ~~~gak~YgApWCpHC~~qk~~fgkeA~-~~l~--yVeC~~~~~---~~~~~~~~~C~~~~I~gyPTw~i---n-G~~-- 331 (365)
++-|..||...-||+|+++.+....-+. -.+. .|..|..+. .+........++.||+.+|+..+ + ++.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 4568888889999999999977654211 1233 355553210 01112345688899999999887 3 332
Q ss_pred -cCCCCChhhhhh
Q 017869 332 -RARPVRPRQGIW 343 (365)
Q Consensus 332 -y~G~~~l~~l~~ 343 (365)
=.|..+.++|..
T Consensus 230 v~~G~iS~deL~~ 242 (256)
T TIGR02739 230 LAYGFISQDELKE 242 (256)
T ss_pred EeeccCCHHHHHH
Confidence 368888888754
No 194
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=84.82 E-value=1.1 Score=39.10 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=30.0
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAK 318 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~ 318 (365)
+++|+.|+|+.|+++++.+.+. .++| ++...+.... +.-.++++..|
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~---~i~~~~~d~~~~~~s~-~eL~~~l~~~~ 50 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH---QLSYKEQNLGKEPLTK-EEILAILTKTE 50 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc---CCCeEEEECCCCCCCH-HHHHHHHHHhC
Confidence 6799999999999999999873 4544 4443332211 12345555544
No 195
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=84.34 E-value=1.3 Score=37.49 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=32.2
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKI 319 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I 319 (365)
+++|+.|.|+.|+++++.+.+. .++| ++.-.+.... +.-.+++++.|+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~---gi~~~~~d~~~~p~s~-~eL~~~l~~~g~ 51 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA---GHEVEVRDLLTEPWTA-ETLRPFFGDLPV 51 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---CCCcEEeehhcCCCCH-HHHHHHHHHcCH
Confidence 7899999999999999999863 3544 4443333222 224567776664
No 196
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=83.55 E-value=1.8 Score=37.63 Aligned_cols=31 Identities=19% Similarity=0.056 Sum_probs=21.5
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgk 288 (365)
+.++..-.+.=+.+|-|.||| |.++.+.+.+
T Consensus 15 v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 15 VSLSKYKGKVLLIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EeHHHhCCCEEEEEEEcCCCC-chHHHHHHHH
Confidence 445544344445667799999 9998887776
No 197
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=83.41 E-value=3.5 Score=39.49 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=22.3
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgk 288 (365)
+.+++.-.+.=+..|-|.|||.|.++.+.+.+
T Consensus 92 vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~ 123 (236)
T PLN02399 92 VALSKFKGKVLLIVNVASKCGLTSSNYSELSH 123 (236)
T ss_pred EeHHHhCCCeEEEEEEcCCCcchHHHHHHHHH
Confidence 45555444444566669999999988766665
No 198
>PLN02412 probable glutathione peroxidase
Probab=82.75 E-value=1.5 Score=39.05 Aligned_cols=32 Identities=13% Similarity=-0.032 Sum_probs=20.0
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgk 288 (365)
+.++..-.+.=+.+|-|.|||.|.++.+.+.+
T Consensus 22 v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~ 53 (167)
T PLN02412 22 VSLNQYKGKVLLIVNVASKCGLTDSNYKELNV 53 (167)
T ss_pred EeHHHhCCCEEEEEEeCCCCCChHHHHHHHHH
Confidence 44544323333444669999999987666654
No 199
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=81.94 E-value=1.4 Score=39.47 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=28.3
Q ss_pred cHHHHHhcCCceeeEEEECCe-ecCCCCChhhhhh
Q 017869 310 IAKACSDAKIEGFPTWVINGQ-WRARPVRPRQGIW 343 (365)
Q Consensus 310 ~~~~C~~~~I~gyPTw~inG~-~y~G~~~l~~l~~ 343 (365)
..+...+.||.|+||.++||+ ...|.++.+.+..
T Consensus 164 ~~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~~~ 198 (201)
T cd03024 164 DEARARQLGISGVPFFVFNGKYAVSGAQPPEVFLQ 198 (201)
T ss_pred HHHHHHHCCCCcCCEEEECCeEeecCCCCHHHHHH
Confidence 445677889999999999976 6799999988754
No 200
>PRK01749 disulfide bond formation protein B; Provisional
Probab=81.49 E-value=7.8 Score=35.36 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCC-CCCCC------------------C-ccccccccccccccccCCChhHHHHHHHHHHHH
Q 017869 69 IGGVGFLETTYLSYLKLTNSD-AFCPI------------------G-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAV 128 (365)
Q Consensus 69 la~iGl~~S~yLt~~k~~~~~-~~C~i------------------~-~~sC~~Vl~S~ya~lfGiP~sl~Gl~~Y~~v~~ 128 (365)
.++.|+.+++|-...+.-..+ ..|+. . ..+|+++. -++||++.+.+-+++|..+++
T Consensus 81 ~al~G~~iA~~hv~~q~~~~~~~~C~~~~~~~~~lpl~~~l~~lf~~~~~C~~~~----w~~lGlSmp~wsll~F~~~~~ 156 (176)
T PRK01749 81 SAWKGLQLALEHTDYQLNPSPFNTCDFFVEFPSWLPLDKWLPSVFVASGDCSERQ----WQFLGLEMPQWLVVIFAAYLV 156 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCCcccccccCCHHHHHHHhcCCCCCCCCcc----hhhcccCHHHHHHHHHHHHHH
Confidence 357899999887655542222 57863 2 45798764 368999999999999998887
Q ss_pred HH
Q 017869 129 LG 130 (365)
Q Consensus 129 la 130 (365)
++
T Consensus 157 ~~ 158 (176)
T PRK01749 157 VA 158 (176)
T ss_pred HH
Confidence 65
No 201
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=79.92 E-value=8.6 Score=34.89 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=17.8
Q ss_pred ccceEEEc-cCCCHhHHHHHHHHhh
Q 017869 265 AIGAKMYG-AFWCSHCLEQKQMFGS 288 (365)
Q Consensus 265 ~~gak~Yg-ApWCpHC~~qk~~fgk 288 (365)
+.-+.+|. +.|||.|..+.+.+.+
T Consensus 32 k~vvl~F~p~~~cp~C~~el~~l~~ 56 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTELEDLAD 56 (187)
T ss_pred CEEEEEEECCCcCCcCHHHHHHHHH
Confidence 33455555 8999999999877765
No 202
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=78.58 E-value=7.6 Score=29.21 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=35.9
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCC-ceeeEEEECCee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI-EGFPTWVINGQW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I-~gyPTw~inG~~ 331 (365)
+++|+.+.||+|.+.+-.+... .++|-+...+-+.+ ..+.-+.+-. ...|+++.+|+.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~---gl~~~~~~~~~~~~---~~~~~~~~p~~~~vP~l~~~~~~ 59 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALK---GVPYEYVEEDLGNK---SELLLASNPVHKKIPVLLHNGKP 59 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHc---CCCCEEEEeCcccC---CHHHHHhCCCCCCCCEEEECCEE
Confidence 4789999999999999888752 45553322221121 1222233443 689999887754
No 203
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=78.54 E-value=3.7 Score=35.46 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=18.9
Q ss_pred HHHhhhhcccceEEEc-cCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak~Yg-ApWCpHC~~qk~~fgk 288 (365)
+.+...-.+.-+.+|. ..|||+|..+.+.+.+
T Consensus 23 ~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~ 55 (154)
T PRK09437 23 VSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRD 55 (154)
T ss_pred EeHHHhCCCCEEEEEECCCCCCchHHHHHHHHH
Confidence 4454432333344443 4699999988766654
No 204
>PRK02110 disulfide bond formation protein B; Provisional
Probab=77.45 E-value=14 Score=33.59 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCC-C--------------------ccccccccccccccccCCChhHHHHHHHHHH
Q 017869 68 GIGGVGFLETTYLSYLKLTNSDAFCPI-G--------------------GASCGDVLNSDYAVVFGVPLPFIGMFAYGLV 126 (365)
Q Consensus 68 ~la~iGl~~S~yLt~~k~~~~~~~C~i-~--------------------~~sC~~Vl~S~ya~lfGiP~sl~Gl~~Y~~v 126 (365)
..++.|+.++.|-...+.... ..|.. . ..+|+++ +-++||++.+.+-+++|.++
T Consensus 79 l~a~~G~~ia~~h~~~q~~p~-~~Cg~~~~~~~~~~lpl~~~~~~~f~~~g~C~~~----~w~llGlsmp~wsli~F~~~ 153 (169)
T PRK02110 79 LSALGGIAVAGRHVYIQLNPG-FSCGIDALQPIVDSLPPAKWLPGVFKVDGLCETP----YPPILGLSLPGWALIAFVLI 153 (169)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CCCCCCcchHHHHhCCHHHHHHHHhcCCCCccCc----CccccccCHHHHHHHHHHHH
Confidence 446889999998887775322 56741 1 2357764 34689999999999999887
Q ss_pred HHHHH
Q 017869 127 AVLGL 131 (365)
Q Consensus 127 ~~lal 131 (365)
+++.+
T Consensus 154 ~l~~~ 158 (169)
T PRK02110 154 AVAVA 158 (169)
T ss_pred HHHHH
Confidence 66543
No 205
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=75.94 E-value=8.3 Score=30.24 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=43.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhHh-hcc--CceEEcCCCCCcCccccHHHHHhcCCceeeEEEECC-------eecCCCCC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEA-VKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING-------QWRARPVR 337 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA-~~~--l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG-------~~y~G~~~ 337 (365)
+.+||-+-|+-|.++++.+.+-. ... +..||.+.| .++-.+++. ..|...++| +...+-.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d--------~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED--------PELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT--------HHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC--------HHHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 68999999999999999998621 122 335666632 367778885 699999987 33444455
Q ss_pred hhhh
Q 017869 338 PRQG 341 (365)
Q Consensus 338 l~~l 341 (365)
.++|
T Consensus 73 ~~~L 76 (81)
T PF05768_consen 73 EEQL 76 (81)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 206
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=75.82 E-value=11 Score=34.74 Aligned_cols=32 Identities=6% Similarity=-0.043 Sum_probs=20.3
Q ss_pred HHHhhhhcccceEEEc-cCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak~Yg-ApWCpHC~~qk~~fgk 288 (365)
+.|+....+.-+.+|. +.|||.|..+.+.|.+
T Consensus 24 v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~ 56 (187)
T PRK10382 24 VTEKDTEGRWSVFFFYPADFTFVCPTELGDVAD 56 (187)
T ss_pred EEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHH
Confidence 3343333333345545 9999999998877765
No 207
>PRK04388 disulfide bond formation protein B; Provisional
Probab=74.20 E-value=15 Score=33.38 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhhc--CCCCCCCC--------------------CccccccccccccccccCCChhHHHHHHHHH
Q 017869 68 GIGGVGFLETTYLSYLKLT--NSDAFCPI--------------------GGASCGDVLNSDYAVVFGVPLPFIGMFAYGL 125 (365)
Q Consensus 68 ~la~iGl~~S~yLt~~k~~--~~~~~C~i--------------------~~~sC~~Vl~S~ya~lfGiP~sl~Gl~~Y~~ 125 (365)
..++.|+.+++|-...+.. +....|.. +..+|+++- -++||++.+.+-+++|.+
T Consensus 78 ~~a~~G~~iA~~h~~lq~~~~~~~~~C~~~~~~~~~~~~~~~~l~~~~~~~~~C~~~~----w~~lGLSmp~wsll~f~~ 153 (172)
T PRK04388 78 IAAGVGMGIAARHVWVQIRPKDMMSSCGPPLSFLSETMGPFEVFRTVLTGTGDCGNID----WRFLGLSMPMWSMVWFVG 153 (172)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCcCChhhhhhhccCHHHHHHHHhCCCCCCCCCc----chhhccCHHHHHHHHHHH
Confidence 4568899999998877653 23457841 124688753 358999999999999998
Q ss_pred HHHHHHH
Q 017869 126 VAVLGLL 132 (365)
Q Consensus 126 v~~lal~ 132 (365)
++++++.
T Consensus 154 l~~l~~~ 160 (172)
T PRK04388 154 LALWALY 160 (172)
T ss_pred HHHHHHH
Confidence 8777654
No 208
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=70.89 E-value=14 Score=33.94 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=16.3
Q ss_pred EEccCCCHhHHHHHHHHhh
Q 017869 270 MYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 270 ~YgApWCpHC~~qk~~fgk 288 (365)
+|-|.|||.|..+.+.|.+
T Consensus 32 ~~pa~~cp~C~~el~~l~~ 50 (203)
T cd03016 32 SHPADFTPVCTTELGAFAK 50 (203)
T ss_pred EecCCCCCcCHHHHHHHHH
Confidence 6889999999999877765
No 209
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=69.24 E-value=12 Score=31.62 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=15.3
Q ss_pred ccchhhHHHHHHHHHHHHH
Q 017869 177 TCSYCLTSALLSFSLFFIS 195 (365)
Q Consensus 177 ~C~~Cl~s~~isi~L~~lt 195 (365)
-||||+..|+.........
T Consensus 59 sCpwC~gvWvA~~~~~~~v 77 (105)
T PF07098_consen 59 SCPWCTGVWVAAGLAAGYV 77 (105)
T ss_pred cChhHHHHHHHHHHHHHHH
Confidence 7999999998887765543
No 210
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=68.50 E-value=7.8 Score=32.34 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=16.6
Q ss_pred ceEEEc-cCCCHhHHHHHHHHhh
Q 017869 267 GAKMYG-AFWCSHCLEQKQMFGS 288 (365)
Q Consensus 267 gak~Yg-ApWCpHC~~qk~~fgk 288 (365)
-+.+|. +.|||+|.++.+.+.+
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHH
Confidence 344444 7899999999877766
No 211
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=67.51 E-value=20 Score=32.79 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=22.6
Q ss_pred hHHHhhhhcccceEEEc-cCCCHhHHHHHHHHhh
Q 017869 256 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 288 (365)
Q Consensus 256 ~~~la~~L~~~gak~Yg-ApWCpHC~~qk~~fgk 288 (365)
.+.|.....+..+.+|. +.||++|......+.+
T Consensus 28 ~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~ 61 (199)
T PTZ00253 28 KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSD 61 (199)
T ss_pred EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHH
Confidence 35666655555566665 4789999988776665
No 212
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=66.21 E-value=7.2 Score=34.83 Aligned_cols=77 Identities=18% Similarity=0.073 Sum_probs=51.6
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCCCCChhhhhhhhhh
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRARPVRPRQGIWLSRN 347 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~~~~~~ 347 (365)
+.+|..|-|+-|++-.+..+. +.-++.-++-++-... ..+.-...+.++==|-+|||+..||--..+++.++-.+
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~-~Gf~Vk~~~~~d~~al----K~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~ 102 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKA-NGFEVKVVETDDFLAL----KRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAE 102 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHh-CCcEEEEeecCcHHHH----HHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhC
Confidence 678889999999998888874 2223333444321100 11233344556778999999999999999998876544
Q ss_pred hh
Q 017869 348 ES 349 (365)
Q Consensus 348 e~ 349 (365)
+-
T Consensus 103 ~p 104 (149)
T COG3019 103 KP 104 (149)
T ss_pred CC
Confidence 43
No 213
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=64.35 E-value=6 Score=36.45 Aligned_cols=23 Identities=30% Similarity=0.684 Sum_probs=18.4
Q ss_pred HHHHhcCCceeeEEEECCeecCC
Q 017869 312 KACSDAKIEGFPTWVINGQWRAR 334 (365)
Q Consensus 312 ~~C~~~~I~gyPTw~inG~~y~G 334 (365)
+..++.||+|+||.+|||+..-+
T Consensus 158 ~~a~~~gI~gtPtfiInGky~v~ 180 (207)
T PRK10954 158 KAAADLQLRGVPAMFVNGKYMVN 180 (207)
T ss_pred HHHHHcCCCCCCEEEECCEEEEc
Confidence 44577899999999999986544
No 214
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=63.40 E-value=33 Score=25.60 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=38.3
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~ 331 (365)
+++|+.+.||.|.+..-.+.. + .++| ++.+..+... +..+.-+.+-..-.|+++-+|+.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~-~--~i~~~~~~~~~~~~~~--~~~~~~~~~P~~~vP~l~~~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEE-K--GVDYELVPVDLTKGEH--KSPEHLARNPFGQIPALEDGDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHH-c--CCCcEEEEeCcccccc--CCHHHHhhCCCCCCCEEEECCEE
Confidence 589999999999999987775 2 3444 4455322111 12333455777889999877644
No 215
>PRK15000 peroxidase; Provisional
Probab=62.91 E-value=35 Score=31.51 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=15.7
Q ss_pred eEEEcc-CCCHhHHHHHHHHhh
Q 017869 268 AKMYGA-FWCSHCLEQKQMFGS 288 (365)
Q Consensus 268 ak~YgA-pWCpHC~~qk~~fgk 288 (365)
+.+|.+ .|||.|..+.+.|.+
T Consensus 38 vL~F~p~~~t~vC~~El~~l~~ 59 (200)
T PRK15000 38 VLFFWPMDFTFVCPSELIAFDK 59 (200)
T ss_pred EEEEECCCCCCCCHHHHHHHHH
Confidence 444445 599999999877766
No 216
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=60.87 E-value=15 Score=30.90 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=32.1
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 319 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I 319 (365)
+++||.|-|+-|++++..+.+. .....++|...+.... +.-.++.+..|+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~di~~~p~t~-~el~~~l~~~g~ 50 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDK-GIEPEVVKYLKNPPTK-SELEAIFAKLGL 50 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-CCCeEEEeccCCCcCH-HHHHHHHHHcCC
Confidence 4799999999999999999862 2222345544333322 234566776664
No 217
>PRK13189 peroxiredoxin; Provisional
Probab=60.64 E-value=29 Score=32.63 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=21.5
Q ss_pred HHHhhhhccc-ce-EEEccCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAI-GA-KMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~-ga-k~YgApWCpHC~~qk~~fgk 288 (365)
+.+.+.++.. -+ .+|=+.|||.|..+...|.+
T Consensus 27 ~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~ 60 (222)
T PRK13189 27 IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQK 60 (222)
T ss_pred EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHH
Confidence 4555554433 23 36789999999988776665
No 218
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=60.14 E-value=41 Score=27.05 Aligned_cols=36 Identities=6% Similarity=-0.200 Sum_probs=19.9
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 017869 194 ISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQ 230 (365)
Q Consensus 194 ltl~~~~~~~~~~~~~~~~~v~~~~~l~l~~~~~~~~ 230 (365)
+...|.+|.+..+ ...+++-+++++++++++..+.+
T Consensus 28 ~~~fG~~~~~~~~-~l~~~i~~v~~lL~~lGii~DPT 63 (78)
T TIGR01598 28 LDNFGVLWLSFNR-QLNAPIAAITTILAVVGIIMDPT 63 (78)
T ss_pred HHHhcchHHHHHH-HHHHHHHHHHHHHHHHheecCCC
Confidence 4556666665433 23445555566666666666543
No 219
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=59.51 E-value=7 Score=33.91 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=20.9
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgk 288 (365)
+.++..-.+.=+.+|-|.|||.|.+..+.+.+
T Consensus 15 ~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~ 46 (153)
T TIGR02540 15 VSLEKYRGKVSLVVNVASECGFTDQNYRALQE 46 (153)
T ss_pred ecHHHhCCCEEEEEEeCCCCCchhhhHHHHHH
Confidence 44444433433566779999999987765544
No 220
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=58.78 E-value=36 Score=25.29 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=36.2
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEE-CCe
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQ 330 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i-nG~ 330 (365)
+++|+.+.||+|.+.+-.+.. +...++| ++-+.. ++ ..+.-+.+.-...|+++. ||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~-~~~~i~~~~~~~~~~--~~---~~~~~~~~p~~~vP~l~~~~g~ 60 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHE-TGLGDDVELVLVNPW--SD---DESLLAVNPLGKIPALVLDDGE 60 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHH-hCCCCCcEEEEcCcc--cC---ChHHHHhCCCCCCCEEEECCCC
Confidence 378999999999998877764 2234555 444432 11 123334466778999986 553
No 221
>PRK10853 putative reductase; Provisional
Probab=58.74 E-value=14 Score=31.57 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=36.9
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEEC--CeecC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN--GQWRA 333 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~in--G~~y~ 333 (365)
+++||.|-|.-|++++..+.+. .....++|.-.+.... +.-.+++.+.|++. ++| |..|.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~d~~k~p~s~-~eL~~~l~~~g~~~----l~n~~~~~~r 63 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-GIDYRFHDYRVDGLDS-ELLQGFIDELGWEA----LLNTRGTTWR 63 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-CCCcEEeehccCCcCH-HHHHHHHHHcCHHH----HHhcCCchHH
Confidence 6899999999999999999862 2222234443222211 22456788777653 443 55554
No 222
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=57.45 E-value=8.1 Score=32.39 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=18.6
Q ss_pred cccceEEEccCCCHh-HHHHHHHHhh
Q 017869 264 HAIGAKMYGAFWCSH-CLEQKQMFGS 288 (365)
Q Consensus 264 ~~~gak~YgApWCpH-C~~qk~~fgk 288 (365)
.+.-+.+|.+.||+. |.++.+.+.+
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHH
Confidence 344566777999997 9988776655
No 223
>PRK02110 disulfide bond formation protein B; Provisional
Probab=57.25 E-value=73 Score=28.86 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHH
Q 017869 160 AASAYFLYILSTNFSGATCSYCLTSALLSFSLFF 193 (365)
Q Consensus 160 ~~s~yllyi~~~~lI~a~C~~Cl~s~~isi~L~~ 193 (365)
...+.-+|+|.+. --.-|+.|+.--...+.+.+
T Consensus 24 ~~l~~Al~~Q~~~-g~~PC~LCi~QR~~~~~i~l 56 (169)
T PRK02110 24 ALVGGALYLQYVK-GEDPCPLCIIQRYAFLLIAI 56 (169)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHH
Confidence 3334445777665 57899999987765554444
No 224
>PRK01749 disulfide bond formation protein B; Provisional
Probab=56.25 E-value=95 Score=28.28 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHH
Q 017869 148 RLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFF 193 (365)
Q Consensus 148 ~~~ll~~s~~~~~~s~yllyi~~~~lI~a~C~~Cl~s~~isi~L~~ 193 (365)
|+.++.+..++....+.-+|+|.+. --.-|+.|+.--..-+.+.+
T Consensus 12 r~~~~l~~l~~~~ll~~Al~~Q~~l-gl~PC~LCi~QR~~~~~l~l 56 (176)
T PRK01749 12 RGAWLLLAFTALALELTALYFQHVM-LLKPCVMCIYERVALFGILG 56 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHHHH
Confidence 4444443333333333346777765 46899999988755554444
No 225
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=53.66 E-value=1.1e+02 Score=27.90 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHH
Q 017869 156 TSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFI 194 (365)
Q Consensus 156 ~~~~~~s~yllyi~~~~lI~a~C~~Cl~s~~isi~L~~l 194 (365)
+++.....+-+|+|... --+-|+.|+.--...+.+.++
T Consensus 21 ~~~~~~~~~al~fq~i~-g~~PC~LC~~QR~~~~~~~~i 58 (170)
T COG1495 21 LGLALALLAALYFQYIL-GLEPCPLCLYQRIAMYGLGVI 58 (170)
T ss_pred HHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHH
Confidence 34445556667888765 578999999988777774443
No 226
>PTZ00256 glutathione peroxidase; Provisional
Probab=52.45 E-value=11 Score=33.98 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=16.0
Q ss_pred EEEccCCCHhHHHHHHHHhh
Q 017869 269 KMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 269 k~YgApWCpHC~~qk~~fgk 288 (365)
.+|-|.|||.|.+..+.+.+
T Consensus 46 v~n~atwCp~C~~e~p~l~~ 65 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVE 65 (183)
T ss_pred EEEECCCCCchHHHHHHHHH
Confidence 45569999999998877765
No 227
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=51.87 E-value=5.5 Score=34.29 Aligned_cols=17 Identities=53% Similarity=1.114 Sum_probs=12.6
Q ss_pred eEEEccCCCHhHHHHHHHHhhH
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSE 289 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgke 289 (365)
-.|||||||- .+.|++|
T Consensus 93 stmygapwcd-----iqffeqe 109 (159)
T PF14673_consen 93 STMYGAPWCD-----IQFFEQE 109 (159)
T ss_pred ccccCCCccc-----eeehhhc
Confidence 4799999996 3566664
No 228
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=50.81 E-value=99 Score=29.51 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhCCccchhhHHHHHHHHHHHHHhh
Q 017869 148 RLILLGSSTSMAAASAYF-LYILSTNFSGATCSYCLTSALLSFSLFFISLK 197 (365)
Q Consensus 148 ~~~ll~~s~~~~~~s~yl-lyi~~~~lI~a~C~~Cl~s~~isi~L~~ltl~ 197 (365)
|+.|+.+.+++....++- +|+|... .=.-|+.|+..-+..+.+.+..+.
T Consensus 23 R~~wlll~l~~~~L~~~Al~yfQ~vl-gL~PC~LCIyQR~a~l~i~l~gLI 72 (218)
T PRK04307 23 RFLWLLMAIAMGGLIILAHSFFQIYL-YMAPCEQCVYIRFAMFVMAIGGVI 72 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHHH
Confidence 334433333333333343 4777665 468999999988666666554433
No 229
>PRK04388 disulfide bond formation protein B; Provisional
Probab=50.79 E-value=1.1e+02 Score=27.70 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHhh
Q 017869 161 ASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLK 197 (365)
Q Consensus 161 ~s~yllyi~~~~lI~a~C~~Cl~s~~isi~L~~ltl~ 197 (365)
..+.-+|+|... --.-|+.|+.--..-+.+.++.+.
T Consensus 22 ll~~Aly~Q~~~-gl~PC~LCi~QR~~~~~i~l~~li 57 (172)
T PRK04388 22 LLAYAIFVQLHL-GLEPCPLCIFQRIAFAALALLFLI 57 (172)
T ss_pred HHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 334445777665 568999999987666555554433
No 230
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.96 E-value=83 Score=30.46 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=43.4
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhhHhhc----cCc--eEEcCCCCCcCccccHHHHHhcCCc------eeeE
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLN--YVECFPDGYRKGTKIAKACSDAKIE------GFPT 324 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgkeA~~----~l~--yVeC~~~~~~~~~~~~~~C~~~~I~------gyPT 324 (365)
.++.+.=+..=+.-|.|-|-|.|.+..+-|.+-..+ .+. .||.. - .++..++++|. -.||
T Consensus 137 eel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG--r------fpd~a~kfris~s~~srQLPT 208 (265)
T KOG0914|consen 137 EELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG--R------FPDVAAKFRISLSPGSRQLPT 208 (265)
T ss_pred HHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec--c------CcChHHheeeccCcccccCCe
Confidence 455554444444444499999999999998873322 122 34442 1 23455666554 6799
Q ss_pred EEE--CCe---ecCCCCCh
Q 017869 325 WVI--NGQ---WRARPVRP 338 (365)
Q Consensus 325 w~i--nG~---~y~G~~~l 338 (365)
.++ +|+ +.+-+++-
T Consensus 209 ~ilFq~gkE~~RrP~vd~~ 227 (265)
T KOG0914|consen 209 YILFQKGKEVSRRPDVDVK 227 (265)
T ss_pred EEEEccchhhhcCcccccc
Confidence 887 664 34444443
No 231
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=49.80 E-value=47 Score=30.19 Aligned_cols=55 Identities=7% Similarity=-0.027 Sum_probs=37.4
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCe
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 330 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~ 330 (365)
+++|+.++||.|++..-.+.+ + .++| +..+.+. + .++.-+.|--.-.|+++.||.
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e-~--gl~~e~~~v~~~~--~---~~~~~~~nP~g~VPvL~~~g~ 67 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAE-K--GVSVEIEQVEKDN--L---PQDLIDLNPYQSVPTLVDREL 67 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHH-C--CCCCEEEeCCccc--C---CHHHHHhCCCCCCCEEEECCE
Confidence 789999999999999877764 2 3444 5555432 1 223334456678899988874
No 232
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=49.72 E-value=8.3 Score=35.51 Aligned_cols=20 Identities=20% Similarity=0.753 Sum_probs=16.5
Q ss_pred ceEEEccCCCHhHHHHHHHH
Q 017869 267 GAKMYGAFWCSHCLEQKQMF 286 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~f 286 (365)
.+..|..+-||||.+.++.+
T Consensus 40 ~VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 40 QVLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred eEEEEeCCCCccHHHhcccc
Confidence 37778899999999988654
No 233
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=49.69 E-value=5.5 Score=39.60 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCccchhhHHH-HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 017869 162 SAYFLYILSTNFSGATCSYCLTSA-LLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSS 228 (365)
Q Consensus 162 s~yllyi~~~~lI~a~C~~Cl~s~-~isi~L~~ltl~~~~~~~~~~~~~~~~~v~~~~~l~l~~~~~~ 228 (365)
.+..+.||.|+. +-+||.=+.-- ++++++++..+... .+|..|.++++-++.++..+++|.+
T Consensus 63 iiIIiIImlF~R-rLLCPLGlLCiilimi~lLv~~L~tL----tGQ~LF~Gi~~l~l~~lLaL~vW~Y 125 (381)
T PF05297_consen 63 IIIIIIIMLFKR-RLLCPLGLLCIILIMIVLLVSMLWTL----TGQTLFVGIVILFLCCLLALGVWFY 125 (381)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH-hhcCcchHHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667774 77888532211 22223333333333 3466676665555544444555554
No 234
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=47.24 E-value=32 Score=28.73 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=30.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAK 318 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~ 318 (365)
+++||.|-|+-|+++++.+.+. .++| +|...+...+ +.-.++++..|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~---~i~~~~~di~~~~~t~-~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA---GIEPEIVEYLKTPPTA-AELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC---CCCeEEEecccCCcCH-HHHHHHHHHcC
Confidence 4799999999999999998862 4444 4443333222 22445666665
No 235
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=46.00 E-value=28 Score=30.11 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=30.7
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAK 318 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~ 318 (365)
.+++||.|-|.-|+++++.+.+. .++| +|.-.+.... +.-.++..+.|
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~---gi~~~~~d~~~~p~t~-~eL~~~l~~~g 51 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS---GHDVEVQDILKEPWHA-DTLRPYFGNKP 51 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC---CCCcEEEeccCCCcCH-HHHHHHHHHcC
Confidence 37899999999999999999863 3443 4443333222 22445666544
No 236
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=44.76 E-value=87 Score=23.75 Aligned_cols=61 Identities=3% Similarity=-0.149 Sum_probs=38.0
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~ 331 (365)
.++|+.+.||.|++.+-...+ +......++.+...... +.++.-+-+.-...|+.+.||+.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e-~gl~~e~~~v~~~~~~~--~~~~~~~inP~g~vP~L~~~g~~ 61 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAE-KGLRCEEYDVSLPLSEH--NEPWFMRLNPTGEVPVLIHGDNI 61 (73)
T ss_pred CEEecCCCCccHHHHHHHHHH-cCCCCEEEEecCCcCcc--CCHHHHHhCcCCCCCEEEECCEE
Confidence 368999999999988866654 22223335554321111 12345555777889999887753
No 237
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=43.97 E-value=42 Score=30.76 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=37.5
Q ss_pred HHHhhhhcccceEEEccCCCHhHHHHHHHHhhH--hh--ccCc--eEEcCCCC---CcCccccHHHHH-hcCCceeeEEE
Q 017869 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE--AV--KQLN--YVECFPDG---YRKGTKIAKACS-DAKIEGFPTWV 326 (365)
Q Consensus 257 ~~la~~L~~~gak~YgApWCpHC~~qk~~fgke--A~--~~l~--yVeC~~~~---~~~~~~~~~~C~-~~~I~gyPTw~ 326 (365)
+.|++.-.+.=+..+-|.|||.|++ .+.+.+- .. +.+. -+.|+.-+ ....+...+.|+ +++++ ||-..
T Consensus 18 v~Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~ 95 (183)
T PRK10606 18 TTLEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFS 95 (183)
T ss_pred EeHHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEE
Confidence 4555544455566677999999964 4444431 11 1232 35664200 011122456776 57774 78762
Q ss_pred ---ECC
Q 017869 327 ---ING 329 (365)
Q Consensus 327 ---inG 329 (365)
+||
T Consensus 96 k~dvnG 101 (183)
T PRK10606 96 KIEVNG 101 (183)
T ss_pred EEccCC
Confidence 366
No 238
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=42.99 E-value=1e+02 Score=30.01 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=20.9
Q ss_pred HHHhhhhcccc-eE-EEccCCCHhHHHHHHHHhh
Q 017869 257 LSLAKHLHAIG-AK-MYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 257 ~~la~~L~~~g-ak-~YgApWCpHC~~qk~~fgk 288 (365)
+.|...++... +. ||-+.|||.|..+.+.|.+
T Consensus 90 vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~ 123 (261)
T PTZ00137 90 FNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSE 123 (261)
T ss_pred EeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHH
Confidence 55665534322 33 3358999999998877765
No 239
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=42.54 E-value=91 Score=22.73 Aligned_cols=61 Identities=16% Similarity=0.049 Sum_probs=35.9
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~ 331 (365)
+++|+.+.|+.|.+.+-.+.. .......++.+..+... +..+.-+.+.-...|+++.+|+.
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~~~~~~--~~~~~~~~~p~~~vP~l~~~~~~ 61 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNL-KGLDYEYVPVNLLKGEQ--LSPAYRALNPQGLVPTLVIDGLV 61 (73)
T ss_pred CEEecCCCCcchHHHHHHHHH-cCCCCeEEEecCccCCc--CChHHHHhCCCCCCCEEEECCEE
Confidence 367888889999888777765 22223335555321111 11233344667789999888754
No 240
>PRK10026 arsenate reductase; Provisional
Probab=42.46 E-value=44 Score=29.62 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=31.6
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCC
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 319 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I 319 (365)
.+++|+.|-|.-|+++++.+.+. .-...++|.-.+.... +.-.+++++.|.
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~-gi~~~~~d~~~~ppt~-~eL~~~l~~~g~ 53 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNS-GTEPTIIHYLETPPTR-DELVKLIADMGI 53 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHC-CCCcEEEeeeCCCcCH-HHHHHHHHhCCC
Confidence 47899999999999999999862 1122234443322221 224566766664
No 241
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.27 E-value=28 Score=33.33 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=27.0
Q ss_pred HHHHhcCCceeeEEEE-CCeecCCCCChhhhhh
Q 017869 312 KACSDAKIEGFPTWVI-NGQWRARPVRPRQGIW 343 (365)
Q Consensus 312 ~~C~~~~I~gyPTw~i-nG~~y~G~~~l~~l~~ 343 (365)
+..++.||+|.||+++ +|...+|.|+.+.+..
T Consensus 175 ~~A~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~ 207 (225)
T COG2761 175 AAAQEMGIRGVPTFVFDGKYAVSGAQPYDVLED 207 (225)
T ss_pred HHHHHCCCccCceEEEcCcEeecCCCCHHHHHH
Confidence 3578899999999999 5677999999988644
No 242
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=38.58 E-value=77 Score=23.48 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=31.5
Q ss_pred CCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCeecCC
Q 017869 274 FWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWRAR 334 (365)
Q Consensus 274 pWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y~G 334 (365)
.|||.|.+.+-.+.. +.++| ++++... .+.-...|+.+.+|+.+.+
T Consensus 14 s~sp~~~~v~~~L~~---~~i~~~~~~~~~~~------------~~p~g~vP~l~~~g~~l~e 61 (72)
T cd03054 14 SLSPECLKVETYLRM---AGIPYEVVFSSNPW------------RSPTGKLPFLELNGEKIAD 61 (72)
T ss_pred CCCHHHHHHHHHHHh---CCCceEEEecCCcc------------cCCCcccCEEEECCEEEcC
Confidence 499999999988875 35665 5555321 1334479999999876533
No 243
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=38.45 E-value=82 Score=25.75 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=35.1
Q ss_pred cCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCeec
Q 017869 273 AFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQWR 332 (365)
Q Consensus 273 ApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~y 332 (365)
-.+||+|++..-.+.. +.++| ++.+.+. + ....-+.+=..-.|+.+.||..+
T Consensus 19 ~g~cpf~~rvrl~L~e---Kgi~ye~~~vd~~~--~---p~~~~~~nP~g~vPvL~~~~~~i 72 (91)
T cd03061 19 IGNCPFCQRLFMVLWL---KGVVFNVTTVDMKR--K---PEDLKDLAPGTQPPFLLYNGEVK 72 (91)
T ss_pred CCCChhHHHHHHHHHH---CCCceEEEEeCCCC--C---CHHHHHhCCCCCCCEEEECCEEe
Confidence 4689999999887764 35665 6666542 2 22444446667899988888655
No 244
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=37.38 E-value=62 Score=27.64 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=31.8
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKI 319 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I 319 (365)
+++|+.|-|.-|++++..+.+. .++| ++...++..+ +.-.+++++.|.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~---gi~~~~~~y~~~~~s~-~eL~~~l~~~g~ 52 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH---GIEYTFIDYLKTPPSR-EELKKILSKLGD 52 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc---CCCcEEEEeecCCCCH-HHHHHHHHHcCc
Confidence 7899999999999999999873 4544 4443332222 224556666664
No 245
>PRK13599 putative peroxiredoxin; Provisional
Probab=37.14 E-value=50 Score=30.91 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.8
Q ss_pred EEEccCCCHhHHHHHHHHhh
Q 017869 269 KMYGAFWCSHCLEQKQMFGS 288 (365)
Q Consensus 269 k~YgApWCpHC~~qk~~fgk 288 (365)
.+|=|.|||.|..+...|.+
T Consensus 34 ~~~pa~~tpvCt~El~~l~~ 53 (215)
T PRK13599 34 FSHPADFTPVCTTEFVEFAR 53 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHH
Confidence 47889999999998777765
No 246
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=36.89 E-value=57 Score=25.06 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=32.2
Q ss_pred CCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEEC-Cee
Q 017869 274 FWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQW 331 (365)
Q Consensus 274 pWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~in-G~~ 331 (365)
+|||+|.+..-.+.. ..++| ++.+..++.. ....+ +.+.-...|+++.| |+.
T Consensus 14 ~~Sp~~~kv~~~L~~---~~i~~~~~~~~~~~~~~--~~~~~-~~~p~~~vP~L~~~~~~~ 68 (84)
T cd03038 14 AFSPNVWKTRLALNH---KGLEYKTVPVEFPDIPP--ILGEL-TSGGFYTVPVIVDGSGEV 68 (84)
T ss_pred CcCChhHHHHHHHHh---CCCCCeEEEecCCCccc--ccccc-cCCCCceeCeEEECCCCE
Confidence 799999999988875 24543 5555332211 11223 44567789999887 643
No 247
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=36.60 E-value=1.5e+02 Score=22.03 Aligned_cols=61 Identities=7% Similarity=-0.139 Sum_probs=37.8
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEECCee
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQW 331 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~ 331 (365)
+++|+.+-++.|.+..-.... +.-....++.+..+... +..+..+.+-....|++..+|+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~-~g~~~~~~~v~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~ 61 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKL-NKIPFEECPIDLRKGEQ--LTPEFKKINPFGKVPAIVDGDFT 61 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHH-cCCCcEEEEecCCCCCc--CCHHHHHhCcCCCCCEEEECCEE
Confidence 368999999999998777664 22223335555322111 12344555777889999887743
No 248
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.70 E-value=8.7 Score=37.77 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=8.0
Q ss_pred ccCCCHhHHH
Q 017869 272 GAFWCSHCLE 281 (365)
Q Consensus 272 gApWCpHC~~ 281 (365)
+.+|||+||+
T Consensus 264 ~t~~CP~CQ~ 273 (273)
T COG0266 264 STFYCPVCQK 273 (273)
T ss_pred cCEeCCCCCC
Confidence 4689999974
No 249
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=34.41 E-value=3e+02 Score=24.27 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHH
Q 017869 161 ASAYFLYILSTNFSGATCSYCLTSALLSFSLFFI 194 (365)
Q Consensus 161 ~s~yllyi~~~~lI~a~C~~Cl~s~~isi~L~~l 194 (365)
.....+|+|... --.-|+.|+.--+..+.+.++
T Consensus 21 ~~~~aly~q~v~-gl~PC~LCi~QRi~~~~l~l~ 53 (139)
T PRK03113 21 ATLGSLYFSEIM-KFEPCVLCWYQRIFMYPFVLW 53 (139)
T ss_pred HHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHH
Confidence 444446777665 578999999988666655443
No 250
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=34.24 E-value=8.1 Score=37.54 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=8.9
Q ss_pred ccCCCHhHHHH
Q 017869 272 GAFWCSHCLEQ 282 (365)
Q Consensus 272 gApWCpHC~~q 282 (365)
+.+|||+||.+
T Consensus 264 ~t~~CP~CQ~~ 274 (274)
T PRK01103 264 STFFCPRCQKR 274 (274)
T ss_pred CcEECcCCCCc
Confidence 46899999864
No 251
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=32.05 E-value=86 Score=25.58 Aligned_cols=59 Identities=7% Similarity=-0.097 Sum_probs=34.3
Q ss_pred hHHHHHHHHhhHhhccCceEEcCCCCCcCccccHHHHHhc-----CCceeeEEEECCeecCCCCChhhhh
Q 017869 278 HCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA-----KIEGFPTWVINGQWRARPVRPRQGI 342 (365)
Q Consensus 278 HC~~qk~~fgkeA~~~l~yVeC~~~~~~~~~~~~~~C~~~-----~I~gyPTw~inG~~y~G~~~l~~l~ 342 (365)
+|++.+.++.. +.++|.|+|-+.. +. ..++-.+. |-...|-..|||+..-|-.++.++.
T Consensus 18 ~~~~v~~lL~~---k~I~f~eiDI~~d-~~--~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 18 RQQEVLGFLEA---KKIEFEEVDISMN-EE--NRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred HHHHHHHHHHH---CCCceEEEecCCC-HH--HHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 78888888876 4788877765431 11 22222222 3456677777876555554555443
No 252
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.68 E-value=30 Score=32.75 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeeEEEE--CCeec
Q 017869 311 AKACSDAKIEGFPTWVI--NGQWR 332 (365)
Q Consensus 311 ~~~C~~~~I~gyPTw~i--nG~~y 332 (365)
..+|++.+++||||+.+ ||+.|
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~ 187 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMY 187 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceE
Confidence 46899999999999998 88764
No 253
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=31.67 E-value=28 Score=26.82 Aligned_cols=31 Identities=26% Similarity=0.572 Sum_probs=21.0
Q ss_pred EEccCCCHhHHHHH--HHHhhHhhccCceEEcCCCC
Q 017869 270 MYGAFWCSHCLEQK--QMFGSEAVKQLNYVECFPDG 303 (365)
Q Consensus 270 ~YgApWCpHC~~qk--~~fgkeA~~~l~yVeC~~~~ 303 (365)
|.--.-||.|+.|- ++|.+. .++.|||-.-|
T Consensus 7 FIAGA~CP~C~~~Dtl~mW~En---~ve~vECV~CG 39 (66)
T COG3529 7 FIAGAVCPACQAQDTLAMWREN---NVEIVECVKCG 39 (66)
T ss_pred hhccCCCcccchhhHHHHHHhc---CCceEehhhcc
Confidence 33345699999986 556653 67788885544
No 254
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=31.30 E-value=28 Score=31.48 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=14.6
Q ss_pred cHHHHHhcCCceeeEEEE-C------CeecCCCCChhhh
Q 017869 310 IAKACSDAKIEGFPTWVI-N------GQWRARPVRPRQG 341 (365)
Q Consensus 310 ~~~~C~~~~I~gyPTw~i-n------G~~y~G~~~l~~l 341 (365)
..++.++.+|+++||.++ | |-..+|.++.+..
T Consensus 136 D~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~ 174 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVY 174 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE--------------------
T ss_pred HHHHHHHcCCCCCCEEEEEeccccccccccccccccccc
Confidence 346788999999999998 3 3456776666554
No 255
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=29.00 E-value=38 Score=29.76 Aligned_cols=62 Identities=8% Similarity=0.017 Sum_probs=37.1
Q ss_pred HHHhhhhcc--cceEEEccCCCHhHHHH-HHHHhhH--hhccCc-----eEEcCCCCCcCccccHHHHHhcCC-ceee
Q 017869 257 LSLAKHLHA--IGAKMYGAFWCSHCLEQ-KQMFGSE--AVKQLN-----YVECFPDGYRKGTKIAKACSDAKI-EGFP 323 (365)
Q Consensus 257 ~~la~~L~~--~gak~YgApWCpHC~~q-k~~fgke--A~~~l~-----yVeC~~~~~~~~~~~~~~C~~~~I-~gyP 323 (365)
+.|...++. +=+.||=+-|||.|..+ ...|.+. ..++.. -|.+|+. ..+.++|++.++ ..||
T Consensus 21 v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~-----~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 21 VNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP-----FVMKAWGKALGAKDKIR 93 (155)
T ss_pred eeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH-----HHHHHHHHhhCCCCcEE
Confidence 455553322 33667888999999999 6666652 122222 1333432 236789999988 3576
No 256
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=28.89 E-value=3e+02 Score=24.27 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHH
Q 017869 160 AASAYFLYILSTNFSGATCSYCLTSALLSFSLFFI 194 (365)
Q Consensus 160 ~~s~yllyi~~~~lI~a~C~~Cl~s~~isi~L~~l 194 (365)
+...+.+|+|... .-.-|+.|+.--+....+.++
T Consensus 19 ~a~~~sLy~q~v~-gl~PC~LCiyQRi~~~~l~l~ 52 (135)
T PRK00611 19 IGTLMSIYYSYIL-NVEPCVLCYYQRICLFPLVVI 52 (135)
T ss_pred HHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHHHH
Confidence 3445557787766 578999999988777766653
No 257
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=28.46 E-value=1e+02 Score=32.76 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=38.5
Q ss_pred ceEEEccCCCHhHHHHHHHHhhHh--hccCceEEcCCCCCcCccccHHHHHhcCCceeeEEEE
Q 017869 267 GAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (365)
Q Consensus 267 gak~YgApWCpHC~~qk~~fgkeA--~~~l~yVeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i 327 (365)
-+++|..+-|..|.+++++.++-+ ..++.+.+-+... +.++.++.+++..|+..+
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~------~~~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGE------EPESETLPKITKLPTVAL 425 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEecccc------chhhHhhcCCCcCCEEEE
Confidence 577788889999999999998732 1233332222211 346678899999999988
No 258
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.04 E-value=1.7e+02 Score=23.49 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhccccC
Q 017869 210 VQLCIASLVVAALSTSYSSIQ 230 (365)
Q Consensus 210 ~~~~v~~~~~l~l~~~~~~~~ 230 (365)
..++.+++++++++++.++.+
T Consensus 46 ~~~v~~vl~iL~~~Gii~DPT 66 (84)
T PF04531_consen 46 SNIVNAVLTILVILGIINDPT 66 (84)
T ss_pred HHHHHHHHHHHHHheeeeCCC
Confidence 445566666666666666543
No 259
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=27.88 E-value=1.3e+02 Score=27.39 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=33.8
Q ss_pred EEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEE-ECC
Q 017869 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWV-ING 329 (365)
Q Consensus 269 k~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~-inG 329 (365)
|+|+.+.||+|.+.+-.+.. +.++| +++..+. . ....+.+.....|+.+ .||
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~---~gl~~e~~~~~~~~-~-----~~~~~~np~g~vP~l~~~~g 55 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGL---KNIPVEKHVLLNDD-E-----ETPIRMIGAKQVPILQKDDG 55 (209)
T ss_pred CeecCCCCChHHHHHHHHHH---cCCCeEEEECCCCc-c-----hhHHHhcCCCCcceEEeeCC
Confidence 47888999999999888875 24665 4443321 1 1224445667889987 466
No 260
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=27.14 E-value=2.4e+02 Score=33.07 Aligned_cols=19 Identities=5% Similarity=0.044 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHHHHHHhh
Q 017869 179 SYCLTSALLSFSLFFISLK 197 (365)
Q Consensus 179 ~~Cl~s~~isi~L~~ltl~ 197 (365)
..++...++.++++++.+.
T Consensus 111 ~~~~~~a~~~~~~~~~L~~ 129 (1094)
T PRK02983 111 SLSIIGFAVHVVAIVLLVL 129 (1094)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3556666666666554443
No 261
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=26.63 E-value=29 Score=33.73 Aligned_cols=20 Identities=15% Similarity=0.178 Sum_probs=17.2
Q ss_pred cccceEEEccCCCHhHHHHH
Q 017869 264 HAIGAKMYGAFWCSHCLEQK 283 (365)
Q Consensus 264 ~~~gak~YgApWCpHC~~qk 283 (365)
.+..+.|.||.|||+|-...
T Consensus 58 Gk~~v~~igw~gCP~~A~~s 77 (249)
T PF06053_consen 58 GKPEVIFIGWEGCPYCAAES 77 (249)
T ss_pred CeeEEEEEecccCccchhhH
Confidence 46679999999999998876
No 262
>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=26.09 E-value=5.2e+02 Score=28.71 Aligned_cols=64 Identities=17% Similarity=0.447 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC--CCCC--CCccccccccccccccccCCChhHHHHHHHHHHHHHHHH
Q 017869 68 GIGGVGFLETTYLSYLKLTNSD--AFCP--IGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (365)
Q Consensus 68 ~la~iGl~~S~yLt~~k~~~~~--~~C~--i~~~sC~~Vl~S~ya~lfGiP~sl~Gl~~Y~~v~~lal~ 132 (365)
++++.|++.++++.+.-++..+ ..=| ..+-+=+-+|+ +++-++--|+=+.|-+.|.+...+++.
T Consensus 125 vlavlgli~~~f~~fil~~snPF~r~~p~~~eGrgLNPlLQ-d~gli~HPPllYlGYvgfsV~fs~avA 192 (648)
T COG1138 125 VLAVLGLITAGFLLFILFTSNPFTRLFPVPPEGRGLNPLLQ-DPGLIFHPPLLYLGYVGFSVAFSVAVA 192 (648)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCCCChhhh-CcccccCCcchhhhHHHHHHHHHHHHH
Confidence 4566666666666666554211 1111 11446678888 888899999999999999988776655
No 263
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=26.01 E-value=2.1e+02 Score=23.29 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCch-hHHHHHHH
Q 017869 39 SRDSDSDSDLRTTPSPSSTSGFSP-YGWCAGIG 70 (365)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~la 70 (365)
..+|+.+--.+|+++-+..++.++ ..+-.++|
T Consensus 28 tq~E~g~vv~Gt~~sAP~~~~l~rk~~~TTiia 60 (85)
T PF07330_consen 28 TQDEAGEVVPGTDPSAPANPRLKRKALITTIIA 60 (85)
T ss_pred ccCcCCCcCCCCCCCCCCCchHHHHHHHHHHHH
Confidence 344444444455543333333333 44433333
No 264
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=25.33 E-value=61 Score=29.63 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=25.5
Q ss_pred cHHHHHhcCCceeeEEEEC---C--eecCCCCChhhhh
Q 017869 310 IAKACSDAKIEGFPTWVIN---G--QWRARPVRPRQGI 342 (365)
Q Consensus 310 ~~~~C~~~~I~gyPTw~in---G--~~y~G~~~l~~l~ 342 (365)
+.+...+.||.|.||+++| | +.|-|..-++.+.
T Consensus 168 ~~~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~ 205 (209)
T cd03021 168 NTDEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVA 205 (209)
T ss_pred HHHHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHH
Confidence 3455677899999999994 4 6888888777653
No 265
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=24.92 E-value=1.3e+02 Score=22.11 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=35.4
Q ss_pred EEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCee
Q 017869 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQW 331 (365)
Q Consensus 269 k~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~~ 331 (365)
++|+.+.|+.|++.+-.+.. . .++| ++.+...+. ..+.-..+.-...|+++.+|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~-~--gi~~e~~~~~~~~~~----~~~~~~~~p~~~vP~L~~~~~~ 59 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLAD-A--GVEYEDVRITYEEWP----ELDLKPTLPFGQLPVLEIDGKK 59 (72)
T ss_pred EEEEEcCcchHHHHHHHHHH-C--CCCcEEEEeCHHHhh----hhhhccCCcCCCCCEEEECCEE
Confidence 57878889999999888875 2 4544 555542211 1122234566688999887754
No 266
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=24.80 E-value=11 Score=36.61 Aligned_cols=13 Identities=23% Similarity=0.874 Sum_probs=10.3
Q ss_pred ccCCCHhHHHHHH
Q 017869 272 GAFWCSHCLEQKQ 284 (365)
Q Consensus 272 gApWCpHC~~qk~ 284 (365)
+.+|||.||...+
T Consensus 254 ~ty~Cp~CQ~~~~ 266 (269)
T PRK14811 254 GTHFCPQCQPLRP 266 (269)
T ss_pred CcEECCCCcCCCC
Confidence 4789999997654
No 267
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=23.22 E-value=18 Score=35.34 Aligned_cols=10 Identities=30% Similarity=1.308 Sum_probs=8.1
Q ss_pred ccCCCHhHHH
Q 017869 272 GAFWCSHCLE 281 (365)
Q Consensus 272 gApWCpHC~~ 281 (365)
+.+|||+||+
T Consensus 273 ~t~~CP~CQ~ 282 (282)
T PRK13945 273 STHWCPNCQK 282 (282)
T ss_pred ccEECCCCcC
Confidence 4689999984
No 268
>PRK10387 glutaredoxin 2; Provisional
Probab=23.04 E-value=2e+02 Score=25.60 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=33.8
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEE-CC
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NG 329 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~i-nG 329 (365)
+|+|+.+.||+|.+.+-.++. +.++| ++.+... . . .....+...-.|+++. ||
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~---~gi~y~~~~~~~~~-~----~-~~~~~~p~~~VPvL~~~~g 56 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGL---KNIPVELIVLANDD-E----A-TPIRMIGQKQVPILQKDDG 56 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHH---cCCCeEEEEcCCCc-h----h-hHHHhcCCcccceEEecCC
Confidence 478999999999999988875 24555 4443221 1 1 1133455567999954 55
No 269
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.95 E-value=67 Score=30.10 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=27.7
Q ss_pred cHHHHHhcCCceeeEEEECCeecCCCCChhhhh
Q 017869 310 IAKACSDAKIEGFPTWVINGQWRARPVRPRQGI 342 (365)
Q Consensus 310 ~~~~C~~~~I~gyPTw~inG~~y~G~~~l~~l~ 342 (365)
..+...+.|+=|.|||+++++.|=|..-+.++.
T Consensus 165 ~~~~a~srGvfGaPtfivg~q~fwGqDRL~~le 197 (203)
T COG3917 165 NTAEAVSRGVFGAPTFIVGDQLFWGQDRLYQLE 197 (203)
T ss_pred hHHHHHhcCccCCCeEEECCeeeechhHHHHHH
Confidence 456678889999999999999999988876654
No 270
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=22.56 E-value=2.5e+02 Score=20.91 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=35.9
Q ss_pred EEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEEC-Ce
Q 017869 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQ 330 (365)
Q Consensus 269 k~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~in-G~ 330 (365)
++|+.+-||+|.+.+-.+.. + .++| ++.+..+.++ ..+.-+.+-..-.|+.+.+ |.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~-~--gi~~~~~~v~~~~~~~---~~~~~~~nP~~~vP~L~~~~g~ 60 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKY-N--GLDVEIVDFQPGKENK---TPEFLKKFPLGKVPAFEGADGF 60 (75)
T ss_pred eEecCCCCccHHHHHHHHHH-c--CCceEEEecccccccC---CHHHHHhCCCCCCCEEEcCCCC
Confidence 68888999999998877774 2 3443 5555432121 2343444667789999884 53
No 271
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=22.54 E-value=1.9e+02 Score=29.13 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=46.4
Q ss_pred hhHHHhhhhccc--ceEEEccCCCHhHHHHHHHHhhHhhccCce--EEcCCCCCcCccccHHHHHhcCCceeeEEEECCe
Q 017869 255 FALSLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 330 (365)
Q Consensus 255 ~~~~la~~L~~~--gak~YgApWCpHC~~qk~~fgkeA~~~l~y--VeC~~~~~~~~~~~~~~C~~~~I~gyPTw~inG~ 330 (365)
.....++||..+ .+.+|-=-.||+|-+.+-++.- ..++| ||.+|-- +. +-++ -..+-.|...+.|+
T Consensus 76 hae~~~~~ld~s~L~l~LyQyetCPFCcKVrAFLDy---hgisY~VVEVnpV~--r~--eIk~---SsykKVPil~~~Ge 145 (370)
T KOG3029|consen 76 HAETKATRLDGSPLDLVLYQYETCPFCCKVRAFLDY---HGISYAVVEVNPVL--RQ--EIKW---SSYKKVPILLIRGE 145 (370)
T ss_pred HHHHHHhhcCCCCceEEEEeeccCchHHHHHHHHhh---cCCceEEEEecchh--hh--hccc---cccccccEEEeccc
Confidence 446778888877 7888888899999999887763 35777 8988732 11 1111 24566788888775
No 272
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=22.43 E-value=1.2e+02 Score=26.62 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 017869 68 GIGGVGFLETTYLSYLK 84 (365)
Q Consensus 68 ~la~iGl~~S~yLt~~k 84 (365)
.+++.|++.+.|.+|.+
T Consensus 109 L~gVf~lIWslYf~~~~ 125 (137)
T PLN00092 109 LLGVFGLIWSLYFVYTS 125 (137)
T ss_pred HHhHHHHHHHHHheeec
Confidence 45788999999998876
No 273
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.87 E-value=1.4e+02 Score=29.92 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=19.8
Q ss_pred cccccccccC-CChhHHHHHHHHHHHHHHH
Q 017869 103 LNSDYAVVFG-VPLPFIGMFAYGLVAVLGL 131 (365)
Q Consensus 103 l~S~ya~lfG-iP~sl~Gl~~Y~~v~~lal 131 (365)
+..-.+.++| +|.|+--++.+.+++.+..
T Consensus 10 i~~~l~~~~g~~PFSvgdi~~~~~il~ll~ 39 (318)
T PF12725_consen 10 ISKLLRRLFGWFPFSVGDILYYLLILFLLY 39 (318)
T ss_pred HHHHHHHhccCcChhHHHHHHHHHHHHHHH
Confidence 3344566777 7999988888877665443
No 274
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=21.47 E-value=2.1e+02 Score=26.86 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=38.5
Q ss_pred eEEEccCCCHhHHHHHHHHhhHhhc-c-C--ce-EEc-CCCCCcCc------c-ccHHHHHhcCCc--eeeEEEECCeec
Q 017869 268 AKMYGAFWCSHCLEQKQMFGSEAVK-Q-L--NY-VEC-FPDGYRKG------T-KIAKACSDAKIE--GFPTWVINGQWR 332 (365)
Q Consensus 268 ak~YgApWCpHC~~qk~~fgkeA~~-~-l--~y-VeC-~~~~~~~~------~-~~~~~C~~~~I~--gyPTw~inG~~y 332 (365)
+.+|++=-|+-|-.+-+.+++-+.+ + + .| ||. |--||... + -|..-.+..+.+ .+|-.+|||+..
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 4689999999999999999884322 1 1 22 444 22244332 1 144445555555 689999999654
Q ss_pred CCCCChhh
Q 017869 333 ARPVRPRQ 340 (365)
Q Consensus 333 ~G~~~l~~ 340 (365)
-...+.++
T Consensus 82 ~~g~~~~~ 89 (202)
T PF06764_consen 82 RVGSDRAA 89 (202)
T ss_dssp EETT-HHH
T ss_pred eeccCHHH
Confidence 44444444
No 275
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=21.19 E-value=22 Score=34.57 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=8.6
Q ss_pred EccCCCHhHHH
Q 017869 271 YGAFWCSHCLE 281 (365)
Q Consensus 271 YgApWCpHC~~ 281 (365)
=+.+|||.||+
T Consensus 262 R~t~~CP~CQ~ 272 (272)
T PRK14810 262 RSSHYCPHCQK 272 (272)
T ss_pred CccEECcCCcC
Confidence 35789999984
Done!