Query 017871
Match_columns 365
No_of_seqs 204 out of 549
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 06:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017871.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017871hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bkfa1 d.15.2.2 (A:1-85) Next 96.6 0.0015 1.1E-07 50.9 6.0 66 246-339 5-71 (85)
2 d1ip9a_ d.15.2.2 (A:) Bud emer 95.8 0.0082 6E-07 45.7 6.1 72 243-344 10-82 (85)
3 d1wmhb_ d.15.2.2 (B:) Partitio 79.7 1.7 0.00013 33.2 5.8 55 260-340 17-72 (82)
4 d1oeyj_ d.15.2.2 (J:) Neutroph 59.9 6.5 0.00048 31.0 5.2 39 261-327 25-63 (105)
5 d1e8qa_ g.55.1.1 (A:) Cellulos 54.9 1.6 0.00012 30.1 0.7 14 313-326 19-32 (46)
6 d1wmha_ d.15.2.2 (A:) Protein 48.5 18 0.0013 27.3 5.9 52 247-325 3-54 (83)
7 d1pqsa_ d.15.2.2 (A:) Cell div 44.9 8.4 0.00061 28.9 3.4 54 266-340 11-65 (77)
8 d2npta1 d.15.2.2 (A:4-108) Mit 36.2 24 0.0017 27.6 5.0 56 246-328 14-70 (105)
9 d1t3ba2 d.17.3.1 (A:2-60) Disu 33.7 7.7 0.00056 27.2 1.5 17 314-330 34-50 (59)
10 d1eeja2 d.17.3.1 (A:1-60) Disu 27.3 15 0.0011 25.5 2.2 17 314-330 35-51 (60)
No 1
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.63 E-value=0.0015 Score=50.95 Aligned_cols=66 Identities=9% Similarity=0.178 Sum_probs=51.5
Q ss_pred ceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeE
Q 017871 246 LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM 325 (365)
Q Consensus 246 ~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwM 325 (365)
.-|||+..|..|=-+|-+....+|.+|...|.+.|.. ..+.|.|.|.|+||.
T Consensus 5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l----------------------------~~~~lkY~Ddd~e~v 56 (85)
T d2bkfa1 5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEEV 56 (85)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------------------SSEEEEEECTTSCEE
T ss_pred EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc----------------------------ccceEEEEcCCCCEE
Confidence 4689999888665577777889999999999999963 137899999999998
Q ss_pred Ecc-CcChHHHhhhc
Q 017871 326 LVG-DVPWEMFIGTC 339 (365)
Q Consensus 326 LVG-DVPWemFv~sv 339 (365)
++. |.=.++.+..+
T Consensus 57 ~l~~d~dl~E~~~~a 71 (85)
T d2bkfa1 57 SINSQGEYEEALKMA 71 (85)
T ss_dssp EECSHHHHHHHHHHH
T ss_pred EEecHHHHHHHHHHH
Confidence 775 44555555443
No 2
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.79 E-value=0.0082 Score=45.74 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=53.5
Q ss_pred CCcceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCC
Q 017871 243 SSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDG 322 (365)
Q Consensus 243 ~~~~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEG 322 (365)
.+..-|||+..+.- |.+=|..--+|.+|...+.+.|.. ..++|-|+|.||
T Consensus 10 ~~~ikVKv~~~~D~--~~~~l~~~it~~dL~~kI~~rf~~----------------------------~~~~lkY~Dedg 59 (85)
T d1ip9a_ 10 LKTTKIKFYYKDDI--FALMLKGDTTYKELRSKIAPRIDT----------------------------DNFKLQTKLFDG 59 (85)
T ss_dssp CCCEEEEECBTTCC--EEEEECSCCCHHHHHHHHHHHHTS----------------------------SCEEEEECCSSS
T ss_pred CCCEEEEEEECCcE--EEEEeCCCCCHHHHHHHHHHHhCC----------------------------CceEEEEEcCCC
Confidence 45688999999984 444455567899999999999963 148899999999
Q ss_pred CeEEccC-cChHHHhhhcceeEE
Q 017871 323 DWMLVGD-VPWEMFIGTCKRLRI 344 (365)
Q Consensus 323 DwMLVGD-VPWemFv~svKRLrI 344 (365)
||..+-+ .=|++-++...||.+
T Consensus 60 d~v~i~sD~Dl~~ai~~~~kl~v 82 (85)
T d1ip9a_ 60 SGEEIKTDSQVSNIIQAKLKISV 82 (85)
T ss_dssp CCSCCCSHHHHHHHHHTTCCEEE
T ss_pred CEEEEeCHHHHHHHHHhcCcEEE
Confidence 9986544 456666665555543
No 3
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.72 E-value=1.7 Score=33.15 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=42.9
Q ss_pred eecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEEccC-cChHHHhhh
Q 017871 260 KVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGD-VPWEMFIGT 338 (365)
Q Consensus 260 KVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwMLVGD-VPWemFv~s 338 (365)
.+|.....+|++.+.-|++|-.. .+.+++|.|.|.+||.+-+-. .-+.-=+.+
T Consensus 17 sl~r~~~~~fe~F~~Lle~~H~l--------------------------~~~~f~i~Y~D~hgDLLPINNDdNf~kA~~s 70 (82)
T d1wmhb_ 17 ALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAHGDLLPLTNDDSLHRALAS 70 (82)
T ss_dssp EEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTTSCEEECCSHHHHHHHTTS
T ss_pred eeccccccCHHHHHHHHHHHcCC--------------------------CCCcEEEEEecCCCCcccccCchHHHHHHHh
Confidence 56777789999999999999863 234799999999999998754 455555667
Q ss_pred cc
Q 017871 339 CK 340 (365)
Q Consensus 339 vK 340 (365)
++
T Consensus 71 a~ 72 (82)
T d1wmhb_ 71 GP 72 (82)
T ss_dssp SS
T ss_pred cC
Confidence 76
No 4
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.86 E-value=6.5 Score=30.97 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=32.3
Q ss_pred ecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEEc
Q 017871 261 VDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327 (365)
Q Consensus 261 VDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwMLV 327 (365)
=||+.--+|.+|..-+.+-|.. .+-+|-|.|.|||..-+
T Consensus 25 edl~~~P~ykdLl~lmr~~f~~----------------------------~dIaLNYrD~eGDLIRl 63 (105)
T d1oeyj_ 25 EDLSSTPLLKDLLELTRREFQR----------------------------EDIALNYRDAEGDLVRL 63 (105)
T ss_dssp SCTTCCCCHHHHHHHHHHHHCC----------------------------SSEEEEEECTTSCEEEC
T ss_pred cccccCccHHHHHHHHHHHhcc----------------------------ceeEeeeecCCCCEEEE
Confidence 4788889999999999999964 25679999999998643
No 5
>d1e8qa_ g.55.1.1 (A:) Cellulose docking domain, dockering {Piromyces equi [TaxId: 99929]}
Probab=54.90 E-value=1.6 Score=30.10 Aligned_cols=14 Identities=29% Similarity=0.722 Sum_probs=11.5
Q ss_pred eEEEEEcCCCCeEE
Q 017871 313 FVLTYEDKDGDWML 326 (365)
Q Consensus 313 yvLtYEDkEGDwML 326 (365)
-.++|+|.||||=.
T Consensus 19 ~~V~ytD~dG~WGV 32 (46)
T d1e8qa_ 19 TKVEYTDASGQWGV 32 (46)
T ss_dssp SCEEEEETTEEEEE
T ss_pred CeEEEecCCCcccc
Confidence 45899999999954
No 6
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.54 E-value=18 Score=27.33 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=40.7
Q ss_pred eEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeE
Q 017871 247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM 325 (365)
Q Consensus 247 yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwM 325 (365)
-||+.-.|..+--.+|.. -.|++|...+..|... .. ..-|++-+.|.|||=-
T Consensus 3 riK~~y~G~i~it~~~~~--it~e~l~~evr~~C~f-~~------------------------~q~fT~KWiDeEGDPC 54 (83)
T d1wmha_ 3 RVKAYYRGDIMITHFEPS--ISFEGLCNEVRDMCSF-DN------------------------EQLFTMKWIDEEGDPC 54 (83)
T ss_dssp EEEEEETTEEEEEEECTT--CCHHHHHHHHHHHTTC-CT------------------------TCCCEEEEECTTSCEE
T ss_pred EEEEEecCeEEEEecCCC--ccHHHHHHHHHHHhCC-Cc------------------------CCcEEEEEEcCCCCce
Confidence 588999998777777764 5899999999999874 10 1258899999999954
No 7
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.95 E-value=8.4 Score=28.85 Aligned_cols=54 Identities=19% Similarity=0.336 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEE-ccCcChHHHhhhcc
Q 017871 266 YSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML-VGDVPWEMFIGTCK 340 (365)
Q Consensus 266 y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwML-VGDVPWemFv~svK 340 (365)
--+|++|...+.+--. .|+..... .--.|-|+|.|||... -.|.-|.|-..+.|
T Consensus 11 ~i~f~~L~~kI~~Kia-----~~~~~~~~----------------~~~rlrY~DeDGD~V~i~sddd~~~a~~~~~ 65 (77)
T d1pqsa_ 11 VWNFDDLIMAINSKIS-----NTHNNNIS----------------PITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CCCSHHHHHHHHHHTT-----TTTSSCSC----------------STTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-----hccCCCCC----------------ccceEEEEcCCCCEEEEeccchHHHHHHHHH
Confidence 3579999999887653 34433211 0125889999999754 56788988766554
No 8
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.20 E-value=24 Score=27.56 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=36.6
Q ss_pred ceEEEeec-CCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCe
Q 017871 246 LFVKVSMD-GAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDW 324 (365)
Q Consensus 246 ~yVKV~MD-G~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDw 324 (365)
+-+.+... |..+--.|+....=+|.++..++.+.-..- ..-.+-|||.|||+
T Consensus 14 lVIRI~~~~~~~vDw~V~~~~~l~F~dvL~~i~q~~p~a---------------------------t~taFEYEDEdGDR 66 (105)
T d2npta1 14 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEA---------------------------TTTAFEYEDEDGDR 66 (105)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTS---------------------------CCSEEEEECTTSCE
T ss_pred eEEEEEcCCCceeeeeecCCceeeHHHHHHHHHHhcccc---------------------------cccceeeccccCCE
Confidence 33444433 555777777777778999999987766420 12345699999998
Q ss_pred EEcc
Q 017871 325 MLVG 328 (365)
Q Consensus 325 MLVG 328 (365)
.-|=
T Consensus 67 ITVR 70 (105)
T d2npta1 67 ITVR 70 (105)
T ss_dssp EEEC
T ss_pred eEEc
Confidence 8774
No 9
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=33.75 E-value=7.7 Score=27.17 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=15.5
Q ss_pred EEEEEcCCCCeEEccCc
Q 017871 314 VLTYEDKDGDWMLVGDV 330 (365)
Q Consensus 314 vLtYEDkEGDwMLVGDV 330 (365)
-+.|.|.||+.+++||.
T Consensus 34 gi~Yvs~dg~y~i~G~l 50 (59)
T d1t3ba2 34 GILYVSEDGKYLFEGKL 50 (59)
T ss_dssp EECEEESSSSCEECSCC
T ss_pred EEEEEcCCCCEEEEeEE
Confidence 38999999999999985
No 10
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.29 E-value=15 Score=25.52 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=15.3
Q ss_pred EEEEEcCCCCeEEccCc
Q 017871 314 VLTYEDKDGDWMLVGDV 330 (365)
Q Consensus 314 vLtYEDkEGDwMLVGDV 330 (365)
-+.|.|+||..++.||+
T Consensus 35 ~i~Yvs~dG~y~i~G~l 51 (60)
T d1eeja2 35 GVLYITDDGKHIIQGPM 51 (60)
T ss_dssp EEEEEETTSCEEEESCE
T ss_pred EEEEEcCCCCEEEEeEE
Confidence 37999999999999985
Done!