BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017872
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 244 TCNNSHSFE---VQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFI 300
TC N E + T + DG+LPG+ R +I C+ ++E++ + + E F+
Sbjct: 176 TCANLFLIENNILYTPRVEDGILPGITRARLISHCQQHKXSVQEISLTKKRIEDADAVFL 235
Query: 301 TSSLRVLQHVESI 313
T+SL+ ++ V S+
Sbjct: 236 TNSLQGIRRVLSL 248
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 251 FEVQ-----TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSS-- 303
FEV+ T P + LPG+ R +I++ + GI +RE S L E F++ +
Sbjct: 201 FEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAA 260
Query: 304 -LRVLQHVESIQV 315
+ ++ V+ IQV
Sbjct: 261 EITPVRSVDGIQV 273
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 251 FEVQ-----TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSS-- 303
FEV+ T P + LPG+ R +I++ + GI +RE S L E F++ +
Sbjct: 200 FEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAA 259
Query: 304 -LRVLQHVESIQV 315
+ ++ V+ IQV
Sbjct: 260 EITPVRSVDGIQV 272
>pdb|3QQM|A Chain A, Crystal Structure Of A Putative Amino-Acid
Aminotransferase (Np_104211.1) From Mesorhizobium Loti
At 2.30 A Resolution
pdb|3QQM|B Chain B, Crystal Structure Of A Putative Amino-Acid
Aminotransferase (Np_104211.1) From Mesorhizobium Loti
At 2.30 A Resolution
pdb|3QQM|C Chain C, Crystal Structure Of A Putative Amino-Acid
Aminotransferase (Np_104211.1) From Mesorhizobium Loti
At 2.30 A Resolution
pdb|3QQM|D Chain D, Crystal Structure Of A Putative Amino-Acid
Aminotransferase (Np_104211.1) From Mesorhizobium Loti
At 2.30 A Resolution
pdb|3QQM|E Chain E, Crystal Structure Of A Putative Amino-Acid
Aminotransferase (Np_104211.1) From Mesorhizobium Loti
At 2.30 A Resolution
pdb|3QQM|F Chain F, Crystal Structure Of A Putative Amino-Acid
Aminotransferase (Np_104211.1) From Mesorhizobium Loti
At 2.30 A Resolution
pdb|3QQM|G Chain G, Crystal Structure Of A Putative Amino-Acid
Aminotransferase (Np_104211.1) From Mesorhizobium Loti
At 2.30 A Resolution
pdb|3QQM|H Chain H, Crystal Structure Of A Putative Amino-Acid
Aminotransferase (Np_104211.1) From Mesorhizobium Loti
At 2.30 A Resolution
Length = 221
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 23/100 (23%)
Query: 208 ELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVI 267
E+LL+N+ ++ EG+ITN F ++ D L T + G+LPGV+
Sbjct: 139 EVLLANERGEICEGTITNVF-------ADFGDGVLATPR-----------LDCGLLPGVL 180
Query: 268 RQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVL 307
R +++ R++ E S+ + K F+ +SLR L
Sbjct: 181 RAELLDEGRAE-----EAIYSYDDLKSAKALFVGNSLRGL 215
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 40/143 (27%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
+LL +G Q+ EGS +N F+V E K + T + G+L G+ R
Sbjct: 166 ILLGLNG-QVCEGSFSNVFLV-------KEGKLI------------TPSLDSGILDGITR 205
Query: 269 QLVIEVCRSKGIPIRE-LASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCW 327
+ VI++ +S IP+ E + W E E F+T + + V +
Sbjct: 206 ENVIKLAKSLEIPVEERVVWVWELFEA-DEXFLTHTSAGVVPVRRLN------------- 251
Query: 328 NDIAWEQKLFEGGPGMITKTIQE 350
E FE PG +T T+ E
Sbjct: 252 -----EHSFFEEEPGPVTATLXE 269
>pdb|4EQB|A Chain A, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
And Hepes.
pdb|4EQB|B Chain B, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
And Hepes
Length = 330
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 127 VLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEG 169
+LV DY K+ GIEN+G + FD FS +P+ +G G
Sbjct: 76 LLVPLDYSKIEGIENIGPEFLNQSFDPGNKFS--IPYFWGTLG 116
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 118 RDGEELAVTVLVS--GDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLA 175
RDG + ++S G +G+ E G + F G+ S H+S PF G R+A
Sbjct: 114 RDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPF------AGMRVA 167
Query: 176 LVGRGRDVAE 185
++G G A+
Sbjct: 168 IIGGGNSGAQ 177
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 255 TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSS 303
T P ++ +L G+ R +VI +P++E+ ++ HE K E F+TS+
Sbjct: 193 THPANNMILKGITRDVVIACANEINMPVKEIP--FTTHEALKMDELFVTST 241
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 255 TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSS 303
T P ++ +L G+ R +VI +P++E+ ++ HE K E F+TS+
Sbjct: 193 THPANNMILKGITRDVVIACANEINMPVKEIP--FTTHEALKMDELFVTST 241
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 255 TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSS 303
T P ++ +L G+ R +VI +P++E+ ++ HE K E F+TS+
Sbjct: 193 THPANNMILKGITRDVVIACANEINMPVKEIP--FTTHEALKMDELFVTST 241
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 255 TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSS 303
T P ++ +L G+ R +VI +P++E+ ++ HE K E F+TS+
Sbjct: 193 THPANNMILKGITRDVVIACANEINMPVKEIP--FTTHEALKMDELFVTST 241
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 255 TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSS 303
T P ++ +L G+ R +VI +P++E+ ++ HE K E F+TS+
Sbjct: 193 THPANNMILKGITRDVVIACANEINMPVKEIP--FTTHEALKMDELFVTST 241
>pdb|3SNX|A Chain A, Crystal Structure Of A Putative Susd-Like Carbohydrate
Binding Protein (Bt_1439) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.88 A Resolution
pdb|3SNX|B Chain B, Crystal Structure Of A Putative Susd-Like Carbohydrate
Binding Protein (Bt_1439) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.88 A Resolution
Length = 460
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 291 QHELWKEAF-ITSSLRVLQHVESIQVPKTWELQESDCWND 329
+ ELW E F IT LR + VE + + + E DCW +
Sbjct: 376 RRELWGEGFGITDVLRNQKAVERXALSEDXQKTEVDCWQE 415
>pdb|2XDQ|A Chain A, Dark Operative Protochlorophyllide Oxidoreductase (Chln-
Chlb)2 Complex
Length = 460
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 162 PFVFGVEGTGARLALVG-----RGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGD 216
PF G +GT + + + + +AE + W +L LE +R SV + GD
Sbjct: 271 PFPIGPDGTRTWIEQICATFGIQPQGLAEREAETWQKLSDYLELVRGKSVFFM-----GD 325
Query: 217 QLLEGSITNFFVVC 230
LLE S+ F + C
Sbjct: 326 NLLEISLARFLIRC 339
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,814,111
Number of Sequences: 62578
Number of extensions: 442741
Number of successful extensions: 992
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 15
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)