Query 017872
Match_columns 365
No_of_seqs 190 out of 1537
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12479 branched-chain amino 100.0 1.1E-52 2.5E-57 407.4 31.1 278 5-363 4-291 (299)
2 PRK08320 branched-chain amino 100.0 5.2E-52 1.1E-56 400.2 31.1 274 6-360 4-287 (288)
3 PRK06680 D-amino acid aminotra 100.0 1.8E-51 3.9E-56 396.6 31.4 277 1-359 1-284 (286)
4 PRK12400 D-amino acid aminotra 100.0 2.9E-51 6.2E-56 395.9 31.7 275 4-360 4-286 (290)
5 PRK06606 branched-chain amino 100.0 3.9E-51 8.5E-56 397.7 31.2 275 4-359 6-295 (306)
6 TIGR01122 ilvE_I branched-chai 100.0 7.3E-51 1.6E-55 394.2 30.1 272 8-358 1-286 (298)
7 TIGR01121 D_amino_aminoT D-ami 100.0 2.2E-50 4.9E-55 387.0 30.6 268 7-355 2-274 (276)
8 PRK07650 4-amino-4-deoxychoris 100.0 2.3E-50 4.9E-55 388.1 30.2 271 6-358 1-277 (283)
9 PRK13356 aminotransferase; Pro 100.0 4.8E-50 1E-54 386.6 32.3 268 4-358 6-284 (286)
10 cd01558 D-AAT_like D-Alanine a 100.0 2.2E-50 4.8E-55 384.8 28.8 264 8-352 1-270 (270)
11 PLN02845 Branched-chain-amino- 100.0 4.9E-50 1.1E-54 395.2 31.5 275 5-363 41-329 (336)
12 PRK07544 branched-chain amino 100.0 3.8E-50 8.3E-55 388.3 30.1 270 5-359 9-289 (292)
13 PRK07849 4-amino-4-deoxychoris 100.0 6.8E-50 1.5E-54 387.0 31.3 266 1-357 3-289 (292)
14 PRK06092 4-amino-4-deoxychoris 100.0 1.2E-48 2.6E-53 373.0 29.1 257 6-353 1-266 (268)
15 PRK09266 hypothetical protein; 100.0 2.6E-48 5.6E-53 370.7 29.2 257 5-354 3-260 (266)
16 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 2.2E-47 4.8E-52 360.4 28.4 244 28-352 6-256 (256)
17 TIGR03461 pabC_Proteo aminodeo 100.0 2E-47 4.4E-52 363.0 28.2 251 8-349 1-260 (261)
18 PRK13357 branched-chain amino 100.0 2.5E-47 5.4E-52 378.6 29.9 281 8-358 42-343 (356)
19 cd01557 BCAT_beta_family BCAT_ 100.0 2.7E-47 5.8E-52 366.5 29.2 262 22-357 2-278 (279)
20 TIGR01123 ilvE_II branched-cha 100.0 9.7E-47 2.1E-51 368.0 28.7 281 8-359 1-302 (313)
21 PLN03117 Branched-chain-amino- 100.0 2.1E-46 4.7E-51 371.8 30.3 282 6-359 44-339 (355)
22 PLN02782 Branched-chain amino 100.0 2.2E-46 4.8E-51 376.5 29.5 280 7-359 95-391 (403)
23 cd01559 ADCL_like ADCL_like: 4 100.0 4.4E-46 9.6E-51 351.8 27.6 238 28-352 6-249 (249)
24 COG0115 IlvE Branched-chain am 100.0 5.2E-45 1.1E-49 351.5 30.9 270 5-358 2-282 (284)
25 PLN02259 branched-chain-amino- 100.0 1.2E-44 2.5E-49 362.5 27.6 278 7-359 81-376 (388)
26 PLN02883 Branched-chain amino 100.0 2.3E-43 4.9E-48 352.6 29.9 282 7-359 77-372 (384)
27 PF01063 Aminotran_4: Aminotra 100.0 1.2E-38 2.7E-43 295.5 20.9 226 46-352 1-231 (231)
28 PRK07546 hypothetical protein; 100.0 2.3E-37 5E-42 285.8 24.5 199 30-313 4-209 (209)
29 KOG0975 Branched chain aminotr 100.0 1.2E-35 2.5E-40 289.1 22.0 287 8-359 70-370 (379)
30 PRK07101 hypothetical protein; 100.0 4.3E-30 9.3E-35 234.1 19.9 184 30-307 3-187 (187)
31 PF11814 DUF3335: Peptidase_C3 39.7 33 0.00071 32.1 3.5 22 274-295 104-125 (207)
32 KOG2708 Predicted metalloprote 25.9 34 0.00075 32.8 1.2 39 250-292 29-71 (336)
33 cd05569 PTS_IIB_fructose PTS_I 21.8 1.6E+02 0.0034 23.7 4.2 45 261-305 10-64 (96)
No 1
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=1.1e-52 Score=407.45 Aligned_cols=278 Identities=22% Similarity=0.310 Sum_probs=227.7
Q ss_pred eEEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017872 5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (365)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (365)
.++|+||+++ +.+++.++++||+ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 4 ~~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~i~~p-------------- 66 (299)
T PRK12479 4 QYIYMNGEFV-EKEKAVVSVYDHGFLYGDGVFEGIRSYGG--NVFCLKEHVKRLYESAKSILLTIP-------------- 66 (299)
T ss_pred cEEEECCEEe-EHHHCccccccchhheeeeEEEEEEEECC--EecCHHHHHHHHHHHHHHhCCCCC--------------
Confidence 5899999999 8888999999985 9999999999999 999999999999999999999765
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCC-CCcceeEEEEeecC
Q 017872 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDD-FLGVFDVSVHFSGY 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~-~~~~~~~~v~~~~~ 160 (365)
++. +++++.+.+.+ +.++..+++||++|++|.+. +|..+ ....+++++.+.|+
T Consensus 67 -------~~~----~~l~~~i~~~i---------~~~~~~~~~ir~~v~rg~g~------~g~~~~~~~~~~~~i~~~~~ 120 (299)
T PRK12479 67 -------LTV----DEMEEAVLQTL---------QKNEYADAYIRLIVSRGKGD------LGLDPRSCVKPSVIIIAEQL 120 (299)
T ss_pred -------CCH----HHHHHHHHHHH---------HHcCCCCeEEEEEEEecCCC------CCCCCccCCCceEEEEEEEc
Confidence 122 33444443221 23455678999999998643 12222 23457888888888
Q ss_pred CCccccccCCCcEEEEecccccC-----CcccccchhhcHHHHHHhCCCCCcEEEE-eCCCCeEEecCcceEEEEEcCCC
Q 017872 161 VPFVFGVEGTGARLALVGRGRDV-----AEAKYSDWVRLRKPLEKLRPPSVTELLL-SNDGDQLLEGSITNFFVVCRKDN 234 (365)
Q Consensus 161 ~~~~~~~~~~Gv~l~~~~~~r~~-----~~~K~~~~~~~~~~l~~a~~~g~de~lL-~~~gg~v~Egs~sN~F~v~~~~~ 234 (365)
++.+..++.+|+++.++...|.. +.+|+.||........+|+++|+||+|+ +.+| +|+|++++|+|+|++++
T Consensus 121 ~~~~~~~~~~gv~~~~~~~~r~~~~~~~~~~K~~nyl~~vla~~ea~~~g~de~l~ld~~g-~v~E~s~sNlf~v~~~~- 198 (299)
T PRK12479 121 KLFPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLEALMLNQQG-YVCEGSGDNVFVVKDGK- 198 (299)
T ss_pred ccCChhHHhCCeEEEEEeEeccCCCccCccchhhhhHHHHHHHHHHHHcCCCEEEEEcCCC-cEEECCceEEEEEECCE-
Confidence 65544556789999888877753 3578888755444445688899999975 4577 99999999999999987
Q ss_pred CcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEc
Q 017872 235 SEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQ 314 (365)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~ 314 (365)
|+|||+++|+||||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+||
T Consensus 199 ------------------l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~adevfltnS~~gi~PV~~id 260 (299)
T PRK12479 199 ------------------VLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVKVD 260 (299)
T ss_pred ------------------EEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCeeeeecCcccEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhccCccC
Q 017872 315 VPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLGGYTL 363 (365)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~~~~~ 363 (365)
+ ..++++.+||+|++|+++|.+.....+..+
T Consensus 261 ~------------------~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~ 291 (299)
T PRK12479 261 S------------------REIGDGKPGSVTKQLTEEFKKLTRERGVRV 291 (299)
T ss_pred C------------------EEcCCCCcCHHHHHHHHHHHHHHhhcCCCc
Confidence 7 245567889999999999998877765443
No 2
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=5.2e-52 Score=400.17 Aligned_cols=274 Identities=23% Similarity=0.303 Sum_probs=224.2
Q ss_pred EEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 017872 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (365)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~ 82 (365)
++|+||+++ +.+++.++++|++ |||+|||+++++| ++++|++|++||.+||+.|+|+.|
T Consensus 4 ~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEt~~v~~g--~~~~l~~Hl~RL~~Sa~~l~i~~p--------------- 65 (288)
T PRK08320 4 LIYLNGEFV-PKEEAKVSVFDHGFLYGDGVFEGIRAYNG--RVFRLKEHIDRLYDSAKAIMLEIP--------------- 65 (288)
T ss_pred EEEECCEEE-EHHHCcccccchhhhhcceEEEEEEEECC--EeecHHHHHHHHHHHHHhhCCCCC---------------
Confidence 899999999 8888999999985 9999999999999 899999999999999999999765
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCC-CCcceeEEEEeecCC
Q 017872 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDD-FLGVFDVSVHFSGYV 161 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~-~~~~~~~~v~~~~~~ 161 (365)
++.+.+.+.+.+++ ++++..+++||++|++|.+. .|..+ ....+.+++.+.|++
T Consensus 66 ------~~~~~l~~~i~~~i-------------~~~~~~~~~iri~v~rg~g~------~g~~~~~~~~~~~~~~~~~~~ 120 (288)
T PRK08320 66 ------LSKEEMTEIVLETL-------------RKNNLRDAYIRLVVSRGVGD------LGLDPRKCPKPTVVCIAEPIG 120 (288)
T ss_pred ------CCHHHHHHHHHHHH-------------HhcCCCCEEEEEEEEECCCc------CCCCcccCCCceEEEEEEEcC
Confidence 12223333333333 23455689999999998643 12222 234467788887776
Q ss_pred CccccccCCCcEEEEecccccC-----CcccccchhhcHHHHHHhCCCCCcEEEEeC-CCCeEEecCcceEEEEEcCCCC
Q 017872 162 PFVFGVEGTGARLALVGRGRDV-----AEAKYSDWVRLRKPLEKLRPPSVTELLLSN-DGDQLLEGSITNFFVVCRKDNS 235 (365)
Q Consensus 162 ~~~~~~~~~Gv~l~~~~~~r~~-----~~~K~~~~~~~~~~l~~a~~~g~de~lL~~-~gg~v~Egs~sN~F~v~~~~~~ 235 (365)
+.+...+.+|+++.++...|.. +++|+.||........+|+++|+||+|+.+ +| +|+||+++|||++++++
T Consensus 121 ~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~K~~nyl~~v~a~~~A~~~g~de~L~ld~~g-~v~E~s~sNlf~~~~~~-- 197 (288)
T PRK08320 121 LYPGELYEKGLKVITVSTRRNRPDALSPQVKSLNYLNNILAKIEANLAGVDEAIMLNDEG-YVAEGTGDNIFIVKNGK-- 197 (288)
T ss_pred cCChhHHhcCeEEEEEeeeccCCCCcCccchhhhhHHHHHHHHHHHHcCCCEEEEECCCC-eEEEcCcEEEEEEECCE--
Confidence 5544456789999888877753 468888876555555678899999997554 66 99999999999999987
Q ss_pred cchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcC
Q 017872 236 EAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQV 315 (365)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~ 315 (365)
|+|||+++++||||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||++|++
T Consensus 198 -----------------l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~e~~l~~~dL~~ade~f~~ns~~gv~pV~~i~~ 260 (288)
T PRK08320 198 -----------------LITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYTADEVFLTGTAAEVIPVVKVDG 260 (288)
T ss_pred -----------------EECCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEECCHHHHHhCCEEEEecChhhEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhccC
Q 017872 316 PKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLGG 360 (365)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~~ 360 (365)
..++++++||++++|++.|.+.+...+
T Consensus 261 ------------------~~~~~~~~g~~~~~l~~~~~~~~~~~~ 287 (288)
T PRK08320 261 ------------------RVIGDGKPGPITKKLLEEFRELTKKDG 287 (288)
T ss_pred ------------------EECCCCCcCHHHHHHHHHHHHHHhhcC
Confidence 235567889999999999988776554
No 3
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.8e-51 Score=396.62 Aligned_cols=277 Identities=22% Similarity=0.236 Sum_probs=224.7
Q ss_pred CCCceEEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 017872 1 MTSTRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPS 77 (365)
Q Consensus 1 M~~~~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~ 77 (365)
|. .++|+||+++ +.+++.+++.|++ |||+|||+|+++| ++++|++|++||.+||+.|+|+.|
T Consensus 1 ~~--~~~~~nG~~~-~~~~~~i~~~drg~~yGdGvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~L~i~~~---------- 65 (286)
T PRK06680 1 MK--RIAYVNGRYV-NHREARVHIEDRGFQFADGIYEVCAVRDG--KLVDLDRHLARLFRSLGEIRIAPP---------- 65 (286)
T ss_pred CC--cEEEECCEEE-EHHHCcccccccccceeeEEEEEEEEECC--EEechHHHHHHHHHHHHHcCCCCC----------
Confidence 65 4899999999 8888999998885 9999999999999 999999999999999999999755
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCC-CCCCccCCCCCCCCcceeEEEE
Q 017872 78 GLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVH 156 (365)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~-~~~~~~~~g~~~~~~~~~~~v~ 156 (365)
++.+.+.+.+.+++ ++++..+++||+++++|.+ +++.+ ++.+..+++++.
T Consensus 66 -----------~~~~~l~~~i~~~~-------------~~~~~~~~~lr~~vtrG~~~~~~~~-----~~~~~~~~~~i~ 116 (286)
T PRK06680 66 -----------MTRAELVEVLRELI-------------RRNRVREGLVYLQVTRGVARRDHVF-----PAADVKPSVVVF 116 (286)
T ss_pred -----------CCHHHHHHHHHHHH-------------HHcCCCceEEEEEEEeCCCCCCCCC-----CCCCCCcEEEEE
Confidence 12233334444433 2445668899999999864 32221 122345788888
Q ss_pred eecCCC-ccccccCCCcEEEEeccccc-CCcccccchhhcHHHHHHhCCCCCcEEEEeCCCCeEEecCcceEEEE-EcCC
Q 017872 157 FSGYVP-FVFGVEGTGARLALVGRGRD-VAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVV-CRKD 233 (365)
Q Consensus 157 ~~~~~~-~~~~~~~~Gv~l~~~~~~r~-~~~~K~~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Egs~sN~F~v-~~~~ 233 (365)
+.|+++ ....++.+|+++.++...|. .+.+|+.||........+|+++|+||+|+.++| +|+||+++|||++ ++++
T Consensus 117 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~Ks~nyl~~vla~~eA~~~g~dd~l~ld~g-~v~E~~~sN~f~~~~~~~ 195 (286)
T PRK06680 117 AKSVDFARPAAAAETGIKVITVPDNRWKRCDIKSVGLLPNVLAKQAAKEAGAQEAWMVDDG-FVTEGASSNAWIVTKDGK 195 (286)
T ss_pred EEeccccCChhHHhCCeEEEEecCCCCCCCCcchhccHHHHHHHHHHHHCCCCEEEEecCC-EEEEcCcEEEEEEEECCE
Confidence 888765 33344568999888765553 356899887555455557889999999644477 9999999999999 8876
Q ss_pred CCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEE
Q 017872 234 NSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESI 313 (365)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i 313 (365)
|+|||+++++||||||+.||++|++.|++|+|+.++++||.+|||+|+|||++||+||.+|
T Consensus 196 -------------------l~TP~~~~~iL~Gitr~~il~~a~~~g~~v~e~~i~~~el~~ade~f~~ns~~gi~pV~~i 256 (286)
T PRK06680 196 -------------------LVTRPADNFILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQI 256 (286)
T ss_pred -------------------EEeCCCCCCCCcCHHHHHHHHHHHHcCCeEEEEcCCHHHHhcCcEEEEecCcccEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhcc
Q 017872 314 QVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLG 359 (365)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~ 359 (365)
++ ..+.++.+||+|++|+++|.+.+.+.
T Consensus 257 d~------------------~~~~~~~~g~~~~~L~~~~~~~~~~~ 284 (286)
T PRK06680 257 DG------------------KQIGNGKPGPIAKRLREAYEEFARLT 284 (286)
T ss_pred CC------------------EECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 97 23445678999999999999887664
No 4
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=2.9e-51 Score=395.91 Aligned_cols=275 Identities=19% Similarity=0.188 Sum_probs=219.0
Q ss_pred ceEEEECCeeecCCC--CCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 017872 4 TRIVFSNGVVSQASD--TPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSG 78 (365)
Q Consensus 4 ~~~~~~nG~~~~~~~--~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~ 78 (365)
-+++|+||+++ +.+ ++.|+++||+ |||||||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 4 ~~~~~~ng~~v-~~~~~~~~i~~~drgl~yGdgvFEtir~~~G--~~~~l~~Hl~RL~~Sa~~L~i~~p----------- 69 (290)
T PRK12400 4 ERFVLWNDAVI-DTTKQKTYIELEERGLQFGDGVYEVIRLYKG--NFHLLDPHITRLYRSMEEIELTLP----------- 69 (290)
T ss_pred ccEEEECCEEe-chHHcCceeccccchhhhcceEEEEEEEECC--EecccHHHHHHHHHHHHHhCCCCC-----------
Confidence 35899999999 877 4459999985 9999999999999 899999999999999999999865
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCC-cceEEEEEEEecCC-CCCCccCCCCCCCCcceeEEEE
Q 017872 79 LEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDG-EELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVH 156 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~-~~~~iri~vt~g~~-~~~~~~~~g~~~~~~~~~~~v~ 156 (365)
+ +.+++++.+.+.+ +.++. .+++||+++++|.+ ++|.++ ....|++++.
T Consensus 70 ----------~----~~~~l~~~l~~~~---------~~~~~~~~~~iri~v~rG~~~~~~~~~------~~~~~~~~~~ 120 (290)
T PRK12400 70 ----------F----SKAELITLLYKLI---------ENNNFHEDGTIYLQVSRGVQARTHTFS------YDVPPTIYAY 120 (290)
T ss_pred ----------C----CHHHHHHHHHHHH---------HhcCCCCCEEEEEEEEeCCCCCCCCCC------CCCCcEEEEE
Confidence 1 2334444443221 23333 57899999999864 333221 2234667777
Q ss_pred eecCCCccccccCCCcEEEEecccccC-CcccccchhhcHHHHHHhCCCCCcEEEEeCCCCeEEecCcceEEEEEcCCCC
Q 017872 157 FSGYVPFVFGVEGTGARLALVGRGRDV-AEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNS 235 (365)
Q Consensus 157 ~~~~~~~~~~~~~~Gv~l~~~~~~r~~-~~~K~~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Egs~sN~F~v~~~~~~ 235 (365)
+.+.++ +..++..|+++......+.. +++|+.||........+|++.|+||+|+.++| +|+||+++|||+|++++
T Consensus 121 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Kt~nyl~~vla~~ea~~~g~deaL~l~~g-~v~E~t~sNif~v~~~~-- 196 (290)
T PRK12400 121 ITKKER-PALWIEYGVRAISEPDTRWLRCDIKSLNLLPNILAATKAERKGCKEALFVRNG-TVTEGSHSNFFLIKNGT-- 196 (290)
T ss_pred EecccC-chhHHhcCcEEEECCCCCccCCCCcccccHHHHHHHHHHHHcCCCEEEEEcCC-EEEEcCceEEEEEECCE--
Confidence 665432 22345679888776544433 56899887554444446788999999765677 99999999999999998
Q ss_pred cchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcC
Q 017872 236 EAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQV 315 (365)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~ 315 (365)
|+|||+++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++||+||++|++
T Consensus 197 -----------------l~TPpl~~g~L~GItR~~llela~~~gi~v~E~~i~~~eL~~Adevfltns~~gv~PV~~i~~ 259 (290)
T PRK12400 197 -----------------LYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPMTHLDG 259 (290)
T ss_pred -----------------EEeCCCCCCcCcCHHHHHHHHHHHHcCCcEEEEeCCHHHHHhCCeeeEccCcceEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhccC
Q 017872 316 PKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLGG 360 (365)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~~ 360 (365)
..++++.+||+|+.|++.|.+.++...
T Consensus 260 ------------------~~~~~~~~g~~t~~l~~~~~~~~~~~~ 286 (290)
T PRK12400 260 ------------------TAIQDGQVGPITKMLQRSFSQSLLQSN 286 (290)
T ss_pred ------------------EECCCCCcCHHHHHHHHHHHHHHHhhc
Confidence 245567899999999999998877643
No 5
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=3.9e-51 Score=397.73 Aligned_cols=275 Identities=20% Similarity=0.250 Sum_probs=222.4
Q ss_pred ceEEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCccc----ccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 017872 4 TRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSC----LLFWERHLRRLASSARILYNSSPNLLFKSPTP 76 (365)
Q Consensus 4 ~~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~----~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~ 76 (365)
.+++|+||+++ +.+++.++++|++ |||+|||+|+++| + +++|++|++||.+||+.|+|+.|
T Consensus 6 ~~~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEtir~~~g--~~~~~~~~l~~Hl~RL~~Sa~~l~i~~~--------- 73 (306)
T PRK06606 6 AGYIWFNGELV-PWEDAKVHVLTHALHYGTGVFEGIRAYDT--PKGPAIFRLREHTKRLFNSAKILRMEIP--------- 73 (306)
T ss_pred CCcEEECCEEE-EhHHcccChhhhhhhhcceeEEEEEEecC--CCCCeeeChHHHHHHHHHHHHHhCCCCC---------
Confidence 45899999999 8888999999885 9999999999998 6 99999999999999999999755
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEE
Q 017872 77 SGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVH 156 (365)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~ 156 (365)
++.+.+.+.+.+++ +.++..+++||++|++|.+. .|..+....+.+++.
T Consensus 74 ------------~~~~~l~~~i~~~i-------------~~~~~~~~~ir~~v~rg~~~------~g~~~~~~~~~~~i~ 122 (306)
T PRK06606 74 ------------YSVDELMEAQREVV-------------RKNNLKSAYIRPLVFVGDEG------LGVRPHGLPTDVAIA 122 (306)
T ss_pred ------------CCHHHHHHHHHHHH-------------HhcCCCCEEEEEEEEecCCc------cCcCCCCCCceEEEE
Confidence 12233334343333 24455689999999998653 122222345677888
Q ss_pred eecCCCcc-ccccCCCcEEEEecccccC-----Ccccc-cchhhcHHHHHHhCCCCCcEEEEe-CCCCeEEecCcceEEE
Q 017872 157 FSGYVPFV-FGVEGTGARLALVGRGRDV-----AEAKY-SDWVRLRKPLEKLRPPSVTELLLS-NDGDQLLEGSITNFFV 228 (365)
Q Consensus 157 ~~~~~~~~-~~~~~~Gv~l~~~~~~r~~-----~~~K~-~~~~~~~~~l~~a~~~g~de~lL~-~~gg~v~Egs~sN~F~ 228 (365)
+.|++++. ...+.+|+++.++++.|.. ..+|+ .||........+|+++|+||+|+. .+| +|+||+++|||+
T Consensus 123 ~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~G~de~l~l~~~g-~v~E~~~sNlf~ 201 (306)
T PRK06606 123 AWPWGAYLGEEALEKGIRVKVSSWTRHAPNSIPTRAKASGNYLNSILAKTEARRNGYDEALLLDVEG-YVSEGSGENIFI 201 (306)
T ss_pred EeccccccCcccccCCeEEEEeeEecCCCCCcCcchhhhhccHHHHHHHHHHHHcCCCEEEEECCCC-CEEEcCceEEEE
Confidence 88766432 2335679999988877753 24674 477554455557889999999755 467 999999999999
Q ss_pred EEcCCCCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceE
Q 017872 229 VCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQ 308 (365)
Q Consensus 229 v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~ 308 (365)
|++++ |+|||++.|+||||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+
T Consensus 202 v~~~~-------------------l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~ 262 (306)
T PRK06606 202 VRDGV-------------------LYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFFTGTAAEVT 262 (306)
T ss_pred EECCE-------------------EECCCCcCCcCCCHHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEE
Confidence 99987 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhcc
Q 017872 309 HVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLG 359 (365)
Q Consensus 309 PV~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~ 359 (365)
||++||+ . .+.+|.+||++++|+++|.+.+...
T Consensus 263 PV~~id~---------~---------~~~~g~~g~~~~~L~~~~~~~~~~~ 295 (306)
T PRK06606 263 PIREVDG---------R---------QIGNGKRGPITEKLQSAYFDIVRGR 295 (306)
T ss_pred EEEEECc---------E---------ECCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999998 2 3456689999999999999887753
No 6
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=7.3e-51 Score=394.17 Aligned_cols=272 Identities=21% Similarity=0.269 Sum_probs=220.6
Q ss_pred EECCeeecCCCCCcccccccC---CCeEEEEEEEEcC--cccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 017872 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNN--GSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (365)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g--~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~ 82 (365)
|+||+++ +.+++.++++|++ |||+|||+|+++| +.++|+|++|++||.+||+.|+|+.|
T Consensus 1 ~~ng~~v-~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~~~~~l~~Hl~RL~~Sa~~l~i~~~--------------- 64 (298)
T TIGR01122 1 WMDGEFV-DWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGPAIFRLKEHIQRLYDSAKIYRMEIP--------------- 64 (298)
T ss_pred CcCCEEE-EhhhcccChhhhhhhccceEEEEEEEEcCCCcceeeChHHHHHHHHHHHHHhCCCCC---------------
Confidence 6899999 8888999999885 9999999999987 22599999999999999999999755
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCC-CCcceeEEEEeecCC
Q 017872 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDD-FLGVFDVSVHFSGYV 161 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~-~~~~~~~~v~~~~~~ 161 (365)
++.+.+.+.+.+++ ++++..+++||++|++|.+. .|..+ ....+++++.+.|++
T Consensus 65 ------~~~~~l~~~i~~~i-------------~~~~~~~~~ir~~v~rg~~~------~g~~~~~~~~~~~~v~~~~~~ 119 (298)
T TIGR01122 65 ------YSKEELMEATRETL-------------RKNNLRSAYIRPLVFRGDGD------LGLNPRAGYKPDVIIAAWPWG 119 (298)
T ss_pred ------CCHHHHHHHHHHHH-------------HhcCCCCEEEEEEEEEccCC------CCcCCCCCCCceEEEEEeccc
Confidence 12233333333333 24455689999999998653 12222 234578888888876
Q ss_pred Cccc-cccCCCcEEEEecccccC-----Ccccccc-hhhcHHHHHHhCCCCCcEEEEe-CCCCeEEecCcceEEEEEcCC
Q 017872 162 PFVF-GVEGTGARLALVGRGRDV-----AEAKYSD-WVRLRKPLEKLRPPSVTELLLS-NDGDQLLEGSITNFFVVCRKD 233 (365)
Q Consensus 162 ~~~~-~~~~~Gv~l~~~~~~r~~-----~~~K~~~-~~~~~~~l~~a~~~g~de~lL~-~~gg~v~Egs~sN~F~v~~~~ 233 (365)
++.. ..+.+|+++.++++.|.. +++|+.+ |........+|++.|+||+|+. .+| +|+||+++|||+|+++.
T Consensus 120 ~~~~~~~~~~g~~l~~~~~~r~~~~~~~~~~K~~~~yl~~v~a~~~a~~~g~de~l~ld~~g-~v~E~s~sNlf~v~~~~ 198 (298)
T TIGR01122 120 AYLGEEALEKGIDAKVSSWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDVEG-YVAEGSGENIFIVKDGV 198 (298)
T ss_pred cccCcccccCCeEEEEEEEEcCCCCCcCccchhhhhhHHHHHHHHHHHHcCCCEEEEECCCC-CEEECCceEEEEEECCE
Confidence 5322 234579999998887753 4678875 7555555557889999999754 577 99999999999999987
Q ss_pred CCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEE
Q 017872 234 NSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESI 313 (365)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i 313 (365)
|+|||++.++|+||||+.||++|++.|++|+|+.++++||.+|||+|+|||++||+||++|
T Consensus 199 -------------------l~TP~~~~~~L~GItR~~il~la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~~i 259 (298)
T TIGR01122 199 -------------------LFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREV 259 (298)
T ss_pred -------------------EECCCCCCCcCcchHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhc
Q 017872 314 QVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGL 358 (365)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~ 358 (365)
++ ..++++.+||+|++|++.|.+.+..
T Consensus 260 d~------------------~~~~~~~~g~~~~~l~~~~~~~~~~ 286 (298)
T TIGR01122 260 DG------------------RKIGNGRRGPVTKKLQEAFFDLVTG 286 (298)
T ss_pred CC------------------EECCCCCCChHHHHHHHHHHHHHcC
Confidence 97 2355678999999999999987765
No 7
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=2.2e-50 Score=386.98 Aligned_cols=268 Identities=19% Similarity=0.196 Sum_probs=215.3
Q ss_pred EEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 017872 7 VFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIR 83 (365)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~ 83 (365)
+|+||+++ +.+++.++++|++ |||+|||||+++| ++|+|++|++||.+||+.|+|+.|
T Consensus 2 ~~~nG~~~-~~~~~~i~~~drgl~yGdgvFEtir~~~g--~~~~l~~H~~RL~~Sa~~l~i~~~---------------- 62 (276)
T TIGR01121 2 VLWNGQLV-EREEAKIDIEDRGYQFGDGVYEVIRVYNG--KLFTVNEHIDRLYASAAKIRIDIP---------------- 62 (276)
T ss_pred EEECCEEe-EHHHCeecccccccccccEEEEEEEEECC--EEeChHHHHHHHHHHHHHhCCCCC----------------
Confidence 79999999 8888999998885 9999999999999 999999999999999999999755
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCC-CCCCccCCCCCCCCcceeEEEEeecCCC
Q 017872 84 TPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVHFSGYVP 162 (365)
Q Consensus 84 ~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~-~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 162 (365)
+ +.+.+++.+.+.+ +.++..+++||+++++|.+ +++.. +..+..+.+++.+.|+++
T Consensus 63 -----~----~~~~l~~~i~~~~---------~~~~~~~~~irl~~~rg~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 119 (276)
T TIGR01121 63 -----Y----TKEELHQLLHELV---------EKNNLNTGHVYFQVTRGVAPRNHQF-----PAGTVKPVITAYTKEVPR 119 (276)
T ss_pred -----C----CHHHHHHHHHHHH---------HhcCCCceEEEEEEEcCCCCcCCCC-----CCCCCCcEEEEEEecccC
Confidence 1 2334444443221 2455668899999998853 32221 112234567777777653
Q ss_pred ccccccCCCcEEEEeccccc-CCcccccchhhcHHHHHHhCCCCCcEEEEeCCCCeEEecCcceEEEEEcCCCCcchhhh
Q 017872 163 FVFGVEGTGARLALVGRGRD-VAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKF 241 (365)
Q Consensus 163 ~~~~~~~~Gv~l~~~~~~r~-~~~~K~~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Egs~sN~F~v~~~~~~~~~~~~ 241 (365)
.. ..+..|+++.++...|. .+.+|+.||........+|++.|+||+|+.++| +|+||+++|||+|++++
T Consensus 120 ~~-~~~~~gv~~~~~~~~~~~~~~~K~~nyl~~vla~~eA~~~g~de~l~~~~g-~v~E~~~sNif~v~~~~-------- 189 (276)
T TIGR01121 120 PE-ENLEKGVKAITVEDIRWLRCDIKSLNLLGNVLAKQEAHEKGAYEAILHRGG-TVTEGSSSNVYGIKDGV-------- 189 (276)
T ss_pred Ch-hHHhcCeEEEEecCCCccCCCcchhhhHHHHHHHHHHHHcCCCEEEEecCC-eEEecCceeEEEEECCE--------
Confidence 32 33467988776654443 457898887554444457889999999876677 99999999999999987
Q ss_pred hhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcCCccccc
Q 017872 242 LQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWEL 321 (365)
Q Consensus 242 ~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~~~~~~~ 321 (365)
|+|||+++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|++
T Consensus 190 -----------~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fltns~~gi~PV~~id~------ 252 (276)
T TIGR01121 190 -----------LYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEIDG------ 252 (276)
T ss_pred -----------EEeCCCcCCCCcCHHHHHHHHHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcccEEEEEEECC------
Confidence 999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccccccccccccccCCCccHHHHHHHHHHHHH
Q 017872 322 QESDCWNDIAWEQKLFEGGPGMITKTIQEEIMER 355 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~ 355 (365)
..+.++.+||+|+.|+++|.+.
T Consensus 253 ------------~~~~~~~~g~~~~~L~~~~~~~ 274 (276)
T TIGR01121 253 ------------QQIGDGKPGPWTRQLQKAFEEK 274 (276)
T ss_pred ------------EECCCCCCCHHHHHHHHHHHHh
Confidence 2345667899999999999764
No 8
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=2.3e-50 Score=388.09 Aligned_cols=271 Identities=21% Similarity=0.244 Sum_probs=212.4
Q ss_pred EEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 017872 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (365)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~ 82 (365)
++|+||+++ +.+++.++++|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.|.
T Consensus 1 ~~~~nG~~~-~~~~~~v~~~drg~~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~~~-------------- 63 (283)
T PRK07650 1 LIYVNGQYV-EEEEARISPFDHGYLYGLGVFETFRIYNG--HPFLLDDHYDRLNDALDTLQIEWTM-------------- 63 (283)
T ss_pred CEEECCEEe-EHHHCeecccccccccccEEEEEEEEECC--EEEcHHHHHHHHHHHHHHhCCCCCC--------------
Confidence 479999999 8888999999885 9999999999999 8999999999999999999997551
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCC-CCCccCCCCCCCCcceeEEEEeecCC
Q 017872 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGK-LSGIENMGSDDFLGVFDVSVHFSGYV 161 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~-~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (365)
+.+...+.+.+++ +.++..+++||++|++|.+. ++.+ +....+++++++.|++
T Consensus 64 -------~~~~l~~~l~~~~-------------~~~~~~~~~iRl~v~rg~~~~~~~~------~~~~~~~~~i~~~~~~ 117 (283)
T PRK07650 64 -------TKDEVLLILKNLL-------------EKNGLENAYVRFNVSAGIGEIGLQT------EMYEEPTVIVYMKPLA 117 (283)
T ss_pred -------CHHHHHHHHHHHH-------------HhcCCCcEEEEEEEEeCCCCCCCCC------CCCCCCEEEEEEEcCC
Confidence 2233333333333 23455689999999998543 2211 1234578888888886
Q ss_pred CccccccCCCcEEEEecccc-cCCcccccchhhcHHHHHHhCCCCCcEEEEe-CCCCeEEecCcceEEEEEcCCCCcchh
Q 017872 162 PFVFGVEGTGARLALVGRGR-DVAEAKYSDWVRLRKPLEKLRPPSVTELLLS-NDGDQLLEGSITNFFVVCRKDNSEAED 239 (365)
Q Consensus 162 ~~~~~~~~~Gv~l~~~~~~r-~~~~~K~~~~~~~~~~l~~a~~~g~de~lL~-~~gg~v~Egs~sN~F~v~~~~~~~~~~ 239 (365)
+........|+.+......+ ....+|+.+|........+|++.|+||+||. .+| +|+||+++|||++++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~~y~~~v~a~~~a~~~g~de~llln~~G-~v~E~s~sNif~v~~g~------ 190 (283)
T PRK07650 118 PPGLPAEKEGVVLKQRRNTPEGAFRLKSHHYLNNILGKREIGNDPNKEGIFLTEEG-YVAEGIVSNLFWVKGDI------ 190 (283)
T ss_pred CCChhhcCeEEEEEEEecCCCCCcchhHHhHHHHHHHHHHHHHcCCCeEEEECCCC-eEEEcCceEEEEEECCE------
Confidence 53322223344432221111 1345788777544444456778999999754 566 99999999999999998
Q ss_pred hhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcCCccc
Q 017872 240 KFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTW 319 (365)
Q Consensus 240 ~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~~~~~ 319 (365)
|+|||+++|+|+||||+.||++|++.|++|+|+.++++||..|||+|+|||++||+||.+|++
T Consensus 191 -------------l~TP~l~~g~L~GitR~~li~~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~~i~~---- 253 (283)
T PRK07650 191 -------------VYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLTRIEE---- 253 (283)
T ss_pred -------------EEcCCCcCCCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEEEECC----
Confidence 999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccccccccccccccccCCCccHHHHHHHHHHHHHHhc
Q 017872 320 ELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGL 358 (365)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~ 358 (365)
..+.|.+||+|+.|+++|.+.+..
T Consensus 254 ---------------~~~~g~~g~~~~~l~~~~~~~~~~ 277 (283)
T PRK07650 254 ---------------RDFPGKVGMVTKRLQNLYEMQREK 277 (283)
T ss_pred ---------------EEeCCCCCHHHHHHHHHHHHHHHh
Confidence 223578999999999999887655
No 9
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=4.8e-50 Score=386.55 Aligned_cols=268 Identities=19% Similarity=0.169 Sum_probs=208.9
Q ss_pred ceEEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 017872 4 TRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (365)
Q Consensus 4 ~~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~ 80 (365)
.+++|+||+++ +.+.+.++++|++ |||+|||+|+++| ++++|++|++||.+||+.|+|+.|
T Consensus 6 ~~~~~~nG~~~-~~~~~~i~~~drg~~yGdgvFEtir~~~g--~~~~l~~Hl~RL~~Sa~~L~i~~~------------- 69 (286)
T PRK13356 6 NTWTFFDGEWH-EGNVPIMGPADHAAWLGSTVFDGARAFEG--VTPDLDLHCARVNRSAEALGLKPT------------- 69 (286)
T ss_pred CceEEECCEEc-chhhcccccccchhhhcceeEEEEEEecC--CCCCHHHHHHHHHHHHHHhCCCCC-------------
Confidence 36899999999 8888999999885 9999999999999 899999999999999999999755
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCC-CcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeec
Q 017872 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRD-GEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSG 159 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~-~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~ 159 (365)
++.+.+.+.+.+++. .++ ..+++||++|+++.+... +..+....+.+++.+.+
T Consensus 70 --------~~~~~l~~~i~~~i~-------------~~~~~~~~~ir~~v~rg~g~~~-----~~~~~~~~~~~~~~~~~ 123 (286)
T PRK13356 70 --------VSAEEIEALAREGLK-------------RFDPDTALYIRPMYWAEDGFAS-----GVAPDPESTRFALCLEE 123 (286)
T ss_pred --------CCHHHHHHHHHHHHH-------------HcCCCCcEEEEEEEEeccCccc-----CcCCCcCCceEEEEEEc
Confidence 123334444444432 232 347899999998864310 11111122344444444
Q ss_pred CCCccccccCCCcEEEEecccccCC-----cccc-cchhhcHHHHHHhCCCCCcEEEEe-CCCCeEEecCcceEEEEEcC
Q 017872 160 YVPFVFGVEGTGARLALVGRGRDVA-----EAKY-SDWVRLRKPLEKLRPPSVTELLLS-NDGDQLLEGSITNFFVVCRK 232 (365)
Q Consensus 160 ~~~~~~~~~~~Gv~l~~~~~~r~~~-----~~K~-~~~~~~~~~l~~a~~~g~de~lL~-~~gg~v~Egs~sN~F~v~~~ 232 (365)
.+... .+|+++.++++.|..+ .+|+ .||........+|+++|+||+|+. .+| +|+||+++|||+|+++
T Consensus 124 ~~~~~----~~gv~l~~~~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~g~deal~ld~~G-~v~E~~~sNlf~v~~~ 198 (286)
T PRK13356 124 APMPE----PTGFSLTLSPFRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLG-NVAETATSNVFMVKDG 198 (286)
T ss_pred cCCCC----CCcEEEEEeeeecCCCCCCCccceeccchHHHHHHHHHHHHcCCCEEEEECCCC-CEEEcCceEEEEEECC
Confidence 43221 3689999998887543 2463 355443344456889999999754 477 9999999999999999
Q ss_pred CCCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEE
Q 017872 233 DNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVES 312 (365)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~ 312 (365)
+ |+|||++.++|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++||+||++
T Consensus 199 ~-------------------l~TP~~~~~~L~GItR~~vi~~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~ 259 (286)
T PRK13356 199 V-------------------VFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTR 259 (286)
T ss_pred E-------------------EEcCCCCCCcccCHHHHHHHHHHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEE
Confidence 7 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhc
Q 017872 313 IQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGL 358 (365)
Q Consensus 313 i~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~ 358 (365)
||+ + .+ .+||+|++|+++|.+...+
T Consensus 260 id~---------~----------~~--~~g~~~~~l~~~~~~~~~~ 284 (286)
T PRK13356 260 FDD---------R----------SL--QPGPVTRRARELYWDWAHG 284 (286)
T ss_pred ECC---------E----------Ee--cCChHHHHHHHHHHHHHhc
Confidence 997 2 23 3689999999999886544
No 10
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=2.2e-50 Score=384.80 Aligned_cols=264 Identities=25% Similarity=0.314 Sum_probs=214.6
Q ss_pred EECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 017872 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRT 84 (365)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~ 84 (365)
|+||+++ +.+++.++++|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 1 ~~nG~~~-~~~~~~i~~~d~g~~~G~gvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~~----------------- 60 (270)
T cd01558 1 YLNGEYV-PREEAKVSVFDRGFLFGDGVYEVIRVYNG--KPFALDEHLDRLYRSAKELRIDIP----------------- 60 (270)
T ss_pred CcCCeEe-EHHHCccccccchhcccceEEEEEEEECC--EEecHHHHHHHHHHHHHHhCCCCC-----------------
Confidence 6899999 8888999998885 9999999999999 999999999999999999999755
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCC-CCCCccCCCCCCCCcceeEEEEeecCCCc
Q 017872 85 PSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVHFSGYVPF 163 (365)
Q Consensus 85 ~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~-~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 163 (365)
+ +.+.+++.+.+.+ +.++..++.+|+.+++|.+ .+|.+ +.+..+.+++.+.|+++.
T Consensus 61 ----~----~~~~l~~~i~~~~---------~~~~~~~~~~~~~~t~g~~~~~~~~------~~~~~~~~~i~~~~~~~~ 117 (270)
T cd01558 61 ----Y----TREELKELIRELV---------AKNEGGEGDVYIQVTRGVGPRGHDF------PKCVKPTVVIITQPLPLP 117 (270)
T ss_pred ----C----CHHHHHHHHHHHH---------HHcCCCCceEEEEEEeCCCccCCCC------CCCCCCEEEEEEEecCCC
Confidence 1 2334444443221 2344556788888898754 22221 223456788888887654
Q ss_pred cccccCCCcEEEEeccccc-CCcccccchhhcHHHHHHhCCCCCcEEEE-eCCCCeEEecCcceEEEEEcCCCCcchhhh
Q 017872 164 VFGVEGTGARLALVGRGRD-VAEAKYSDWVRLRKPLEKLRPPSVTELLL-SNDGDQLLEGSITNFFVVCRKDNSEAEDKF 241 (365)
Q Consensus 164 ~~~~~~~Gv~l~~~~~~r~-~~~~K~~~~~~~~~~l~~a~~~g~de~lL-~~~gg~v~Egs~sN~F~v~~~~~~~~~~~~ 241 (365)
+..++..|+++.++...|. .+++|+.||........+|++.|+||+|| |.+| +|+||+++|||++++++
T Consensus 118 ~~~~~~~gv~~~~~~~~~~~~~~~K~~ny~~~~~a~~~a~~~g~de~l~ld~~g-~v~E~~~sNif~~~~~~-------- 188 (270)
T cd01558 118 PAELLEKGVRVITVPDIRWLRCDIKSLNLLNNVLAKQEAKEAGADEAILLDADG-LVTEGSSSNVFIVKNGV-------- 188 (270)
T ss_pred ChhhhhcCeEEEEecccccCCCCchhhccHHHHHHHHHHHHcCCCEEEEEcCCC-EEEEcCcEEEEEEECCE--------
Confidence 4445578999988887764 35799988765555556788999999975 5577 99999999999999987
Q ss_pred hhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcCCccccc
Q 017872 242 LQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWEL 321 (365)
Q Consensus 242 ~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~~~~~~~ 321 (365)
|+|||+++++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||++|++
T Consensus 189 -----------l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~ade~fl~ns~~gv~PV~~i~~------ 251 (270)
T cd01558 189 -----------LVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEIDG------ 251 (270)
T ss_pred -----------EECCCCcCCCCCChHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecCcccEEEEEEECC------
Confidence 999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccccccccccccccCCCccHHHHHHHHHH
Q 017872 322 QESDCWNDIAWEQKLFEGGPGMITKTIQEEI 352 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~ 352 (365)
..++++.+||+|++|++.|
T Consensus 252 ------------~~~~~~~~~~~~~~l~~~~ 270 (270)
T cd01558 252 ------------RPIGDGKPGPVTKRLREAY 270 (270)
T ss_pred ------------eECCCCCCCHHHHHHHHhC
Confidence 2345567899999998865
No 11
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=4.9e-50 Score=395.19 Aligned_cols=275 Identities=13% Similarity=0.099 Sum_probs=221.1
Q ss_pred eEEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017872 5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (365)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (365)
..+|+||+++ +.+++.|++.|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 41 ~~~~~nG~~v-~~~~a~i~~~Drgl~~GdGvFETirv~~G--~~~~le~Hl~RL~~Sa~~L~i~~p-------------- 103 (336)
T PLN02845 41 YSSVVGGITT-DPAAMVIPLDDHMVHRGHGVFDTATIRDG--HLYELDAHLDRFLRSAAKAKIPLP-------------- 103 (336)
T ss_pred eeEEECCEEc-cHHHCcccccccceeecceEEEEEEEECC--EEcCHHHHHHHHHHHHHhhCCCCC--------------
Confidence 3789999999 8888999999986 9999999999999 899999999999999999999765
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCC-CCCcceeEEEEeecC
Q 017872 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSD-DFLGVFDVSVHFSGY 160 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~-~~~~~~~~~v~~~~~ 160 (365)
+ +.+++++.+.+.+ +.++..+++||++|++|.+. .+.. +....+++++.+.|.
T Consensus 104 -------~----~~~~l~~~i~~~i---------~~~~~~~~~irl~vtrG~g~------~~~~~~~~~~~~~~i~~~~~ 157 (336)
T PLN02845 104 -------F----DRATLRRILLQTV---------AASGCRNGSLRYWLSAGPGG------FSLSPSGCSEPAFYAVVIED 157 (336)
T ss_pred -------C----CHHHHHHHHHHHH---------HhcCCCcEEEEEEEEeCCCC------CCCCCCCCCCCEEEEEEccc
Confidence 1 2334444443221 23455688999999998642 1221 123457788887665
Q ss_pred CCccccccCCCcEEEEeccccc---CCcccccchhhcHHHHHHhCCCCCcEEEEeC-CCCeEEecCcceEEEEE-cCCCC
Q 017872 161 VPFVFGVEGTGARLALVGRGRD---VAEAKYSDWVRLRKPLEKLRPPSVTELLLSN-DGDQLLEGSITNFFVVC-RKDNS 235 (365)
Q Consensus 161 ~~~~~~~~~~Gv~l~~~~~~r~---~~~~K~~~~~~~~~~l~~a~~~g~de~lL~~-~gg~v~Egs~sN~F~v~-~~~~~ 235 (365)
+... ....|+++.+++..|. .+.+|+.||........+|+++|+||+||.| +| +|+||+++|||+|+ +++
T Consensus 158 ~~~~--~~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~vla~~eA~~~G~deaLlln~~G-~V~Egt~sNiF~v~~~~~-- 232 (336)
T PLN02845 158 TYAQ--DRPEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEAEERGAFAGIWLDEEG-FVAEGPNMNVAFLTNDGE-- 232 (336)
T ss_pred cccc--cccCCeEEEEeeeeecCCccccchhhhhHHHHHHHHHHHHcCCCEEEEECCCC-cEEEcCcceEEEEEECCE--
Confidence 4322 1257898888876553 3468988875555555678899999997655 66 99999999999986 776
Q ss_pred cchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhC---C--CCEEEEecCHHHHhhhceeeeeecccceEEE
Q 017872 236 EAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSK---G--IPIRELASSWSQHELWKEAFITSSLRVLQHV 310 (365)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~---g--i~v~E~~i~~~eL~~adEvFltnS~~gi~PV 310 (365)
|+|||++ ++|+||||+.||++|+++ | ++|+|+.++++||.+|||+|+|||++||+||
T Consensus 233 -----------------l~TP~l~-~iL~GItR~~vlela~~~~~~G~~i~V~E~~i~~~eL~~AdEvFltnS~~gv~PV 294 (336)
T PLN02845 233 -----------------LVLPPFD-KILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPI 294 (336)
T ss_pred -----------------EEeCCCC-CcCccHHHHHHHHHHHhhhccCCceEEEEEecCHHHHhcCCEEEEecCcccEEEE
Confidence 9999997 499999999999999986 8 9999999999999999999999999999999
Q ss_pred EEEcCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhccCccC
Q 017872 311 ESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLGGYTL 363 (365)
Q Consensus 311 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~~~~~ 363 (365)
.+||+ ..+.+|.+||+|++|+++|++.....++++
T Consensus 295 ~~id~------------------~~~~~g~~gp~t~~L~~~~~~~~~~~~~~~ 329 (336)
T PLN02845 295 VSWDG------------------QPIGDGKVGPITLALHDLLLDDMRSGPPGV 329 (336)
T ss_pred EEECC------------------EECCCCCCCHHHHHHHHHHHHHHhcCCCcc
Confidence 99998 235567899999999999999988887663
No 12
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=3.8e-50 Score=388.28 Aligned_cols=270 Identities=18% Similarity=0.206 Sum_probs=212.4
Q ss_pred eEEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017872 5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (365)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (365)
.++|+||+++ +.+++.++++|++ |||+|||+|+++| ++++|++|++||.+||+.|+|+.|
T Consensus 9 ~~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~i~~~-------------- 71 (292)
T PRK07544 9 GFIWMDGELV-PWRDAKVHVLTHGLHYASSVFEGERAYGG--KIFKLREHSERLRRSAELLDFEIP-------------- 71 (292)
T ss_pred CeEEECCEEE-EhHHCccChhhhHhhhcceeEEeeEeeCC--cccChHHHHHHHHHHHHHhCCCCC--------------
Confidence 4799999999 8888999999885 9999999999999 899999999999999999999765
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecCC
Q 017872 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (365)
++.+.+.+.+.+++ +.++..+++||+++++|.+. .|..+....+.+++.+.+++
T Consensus 72 -------~~~~~l~~~i~~~i-------------~~~~~~~~~ir~~v~rg~~~------~g~~~~~~~~~~~v~~~~~~ 125 (292)
T PRK07544 72 -------YSVAEIDAAKKETL-------------AANGLTDAYVRPVAWRGSEM------MGVSAQQNKIHLAIAAWEWP 125 (292)
T ss_pred -------CCHHHHHHHHHHHH-------------HhcCCCCeEEEEEEEecCCC------CCcCCCCCCcEEEEEEeccc
Confidence 12233334444443 24556789999999998653 12222223345666665554
Q ss_pred Cccc-cccCCCcEEEEecccccCCc-----cccc-chhhcHHHHHHhCCCCCcEEEEe-CCCCeEEecCcceEEEEEcCC
Q 017872 162 PFVF-GVEGTGARLALVGRGRDVAE-----AKYS-DWVRLRKPLEKLRPPSVTELLLS-NDGDQLLEGSITNFFVVCRKD 233 (365)
Q Consensus 162 ~~~~-~~~~~Gv~l~~~~~~r~~~~-----~K~~-~~~~~~~~l~~a~~~g~de~lL~-~~gg~v~Egs~sN~F~v~~~~ 233 (365)
+... ..+.+|+++.++++.|..+. +|.. +|........+|+++|+||+||. .+| +|+||+++|+|+|++++
T Consensus 126 ~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~k~~~~yl~~vla~~~A~~~G~deal~ld~~g-~V~E~~~sNlf~v~~~~ 204 (292)
T PRK07544 126 SYFDPEAKMKGIRLDIAKWRRPDPETAPSAAKAAGLYMICTISKHAAEAKGYADALMLDYRG-YVAEATGANIFFVKDGV 204 (292)
T ss_pred cccCccccCCCEEEEEeEEEcCCCCCcCHhhhhhcccHHHHHHHHHHHHcCCCeEEEECCCC-CEEEcCceEEEEEECCE
Confidence 3221 33457999999888776432 2432 35333334456889999999755 577 99999999999999987
Q ss_pred CCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEE
Q 017872 234 NSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESI 313 (365)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i 313 (365)
|+||+++ ++|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++||+||++|
T Consensus 205 -------------------l~TP~~~-~~L~GItR~~vl~~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~PV~~i 264 (292)
T PRK07544 205 -------------------IHTPTPD-CFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSEI 264 (292)
T ss_pred -------------------EECCCCc-ccccchhHHHHHHHHHHcCCeEEEEecCHHHHhhcCceeecCccceEEEEEEE
Confidence 9999986 59999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhcc
Q 017872 314 QVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLG 359 (365)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~ 359 (365)
++ ..+ .+||++++|+++|.+.+...
T Consensus 265 ~~-------------------~~~--~~g~~~~~l~~~~~~~~~~~ 289 (292)
T PRK07544 265 GE-------------------YRF--TPGAITRDLMDDYEALVRPR 289 (292)
T ss_pred ee-------------------EEe--CCChHHHHHHHHHHHHHhcc
Confidence 97 233 26899999999998877654
No 13
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=6.8e-50 Score=387.02 Aligned_cols=266 Identities=21% Similarity=0.231 Sum_probs=218.6
Q ss_pred CCCceEEEECC-----eeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCC
Q 017872 1 MTSTRIVFSNG-----VVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFK 72 (365)
Q Consensus 1 M~~~~~~~~nG-----~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~ 72 (365)
|..-.++|+|| +++ +.+++.++++|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 3 ~~~~~~~~~ng~~~~~~~~-~~~~a~i~~~drg~~~GdgvFEt~rv~~g--~i~~l~~Hl~RL~~Sa~~l~i~~~----- 74 (292)
T PRK07849 3 MPPPVVVTLDPYGGSERVH-DPSAPLLHADDLAAVRGDGVFETLLVRDG--RPCNLEAHLERLARSAALLDLPEP----- 74 (292)
T ss_pred CCceEEEEECCCCccceEe-chHHCCccchhcchhccceEEEEEEEECC--EECCHHHHHHHHHHHHHhcCCCCC-----
Confidence 33446999999 999 8888999999995 9999999999999 899999999999999999999755
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcC--CCcceEEEEEEEecCCCCCCccCCCCCCCCcc
Q 017872 73 SPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERR--DGEELAVTVLVSGDYGKLSGIENMGSDDFLGV 150 (365)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~--~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~ 150 (365)
+.+.+.+.+.+++. .+ +..+++||+++++|.+.. ..
T Consensus 75 -----------------~~~~l~~~i~~~v~-------------~~~~~~~~~~iRl~v~~g~~~~------------~~ 112 (292)
T PRK07849 75 -----------------DLDRWRRAVELAIE-------------EWRAPEDEAALRLVYSRGRESG------------GA 112 (292)
T ss_pred -----------------CHHHHHHHHHHHHH-------------HhcCCCCCeEEEEEEeCCCCCC------------CC
Confidence 12334444444442 22 346889999999986421 23
Q ss_pred eeEEEEeecCCCccccccCCCcEEEEeccccc----------CCcccccchhhcHHHHHHhCCCCCcEEEE-eCCCCeEE
Q 017872 151 FDVSVHFSGYVPFVFGVEGTGARLALVGRGRD----------VAEAKYSDWVRLRKPLEKLRPPSVTELLL-SNDGDQLL 219 (365)
Q Consensus 151 ~~~~v~~~~~~~~~~~~~~~Gv~l~~~~~~r~----------~~~~K~~~~~~~~~~l~~a~~~g~de~lL-~~~gg~v~ 219 (365)
+.+++.+.|+++.+..++..|+++.+++..+. .+.+|+.||......+.+|+++|+||+|+ |.+| +|+
T Consensus 113 ~~~~i~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~p~~~~~~Kt~ny~~~i~a~~~A~~~g~dd~L~ld~~G-~v~ 191 (292)
T PRK07849 113 PTAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERAPWLLAGAKTLSYAVNMAALRYAARRGADDVIFTSTDG-YVL 191 (292)
T ss_pred CeEEEEEeecCccchhhccCCeEEEEEeccccCcccccCcccccccchhhhHHHHHHHHHHHHcCCCEEEEEcCCC-cEE
Confidence 67788888886554455678999988764432 23588888766556666788999999975 5577 999
Q ss_pred ecCcceEEEEEcCCCCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceee
Q 017872 220 EGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAF 299 (365)
Q Consensus 220 Egs~sN~F~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvF 299 (365)
||+++|||++++++ |+|||+++|+|+||||+.||++|++.|++|+|+.++++||.+|||+|
T Consensus 192 E~s~~Nif~~~~g~-------------------l~TP~~~~giL~GItR~~vie~~~~~g~~v~er~i~~~eL~~Adevf 252 (292)
T PRK07849 192 EGPTSTVVIATDDR-------------------LLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVW 252 (292)
T ss_pred ECCceEEEEEECCE-------------------EECCCCcCCCCccHHHHHHHHHHHHcCCceEEEECCHHHHhhCCEEE
Confidence 99999999999997 99999999999999999999999999999999999999999999999
Q ss_pred eeecccceEEEEEEcCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHh
Q 017872 300 ITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAG 357 (365)
Q Consensus 300 ltnS~~gi~PV~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~ 357 (365)
+|||++||+||.+|++ + .+ ..||+|++|+++|+..+.
T Consensus 253 ltns~~gi~pV~~id~---------~----------~~--~~~~~~~~l~~~~~~~~~ 289 (292)
T PRK07849 253 LVSSVRLAARVHTLDG---------R----------PL--PRDPLADELTELVDAAIV 289 (292)
T ss_pred EecCcceEEEEEEECC---------E----------EC--CCChHHHHHHHHHHHHhh
Confidence 9999999999999998 2 23 247999999999987654
No 14
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=1.2e-48 Score=372.98 Aligned_cols=257 Identities=21% Similarity=0.248 Sum_probs=205.7
Q ss_pred EEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 017872 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (365)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~ 82 (365)
++|+||++. +.++++|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 1 ~~~~nG~~~-----~~i~~~d~g~~~GdgvFEtir~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~~--------------- 58 (268)
T PRK06092 1 MFWINGQPQ-----ESLSVSDRSTQYGDGCFTTARVRDG--QVSLLSRHLQRLQDACERLAIPLD--------------- 58 (268)
T ss_pred CEEECCcCc-----CccCccccccccccceeeEEEEECC--eeccHHHHHHHHHHHHHhcCCCCC---------------
Confidence 479999964 678888875 9999999999999 899999999999999999999754
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCC-CCCCccCCCCCCCCcceeEEEEeecCC
Q 017872 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVHFSGYV 161 (365)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~-~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (365)
+ + +.+.+.+.+. .++..++++|++|++|.+ .++.+ +....+.+++.+.|++
T Consensus 59 -------~---~-~~~~~~l~~~-----------~~~~~~~~iri~v~~g~~~~~~~~------~~~~~~~~~i~~~~~~ 110 (268)
T PRK06092 59 -------D---W-AQLEQEMKQL-----------AAELENGVLKVIISRGSGGRGYSP------AGCAAPTRILSVSPYP 110 (268)
T ss_pred -------C---H-HHHHHHHHHH-----------HhhCCCeEEEEEEEccCCCCCCCC------CCCCCCeEEEEeccCC
Confidence 1 2 2233333211 112357899999998864 22221 1234567888888887
Q ss_pred CccccccCCCcEEEEeccccc----CCcccccchhhcHHHHHHhCCCCCcEEEEeC-CCCeEEecCcceEEEEEcCCCCc
Q 017872 162 PFVFGVEGTGARLALVGRGRD----VAEAKYSDWVRLRKPLEKLRPPSVTELLLSN-DGDQLLEGSITNFFVVCRKDNSE 236 (365)
Q Consensus 162 ~~~~~~~~~Gv~l~~~~~~r~----~~~~K~~~~~~~~~~l~~a~~~g~de~lL~~-~gg~v~Egs~sN~F~v~~~~~~~ 236 (365)
+.+...+.+|+++.+++.++. .+.+|+.||........+|+++|+||+|+.+ +| +|+||+++|||++++++
T Consensus 111 ~~~~~~~~~gv~l~~~~~~~~~~~~~~~~Kt~ny~~~~~a~~~A~~~g~de~l~l~~~g-~v~E~s~sNif~v~~~~--- 186 (268)
T PRK06092 111 AHYSRWREQGITLALCPTRLGRNPLLAGIKHLNRLEQVLIRAELEQTEADEALVLDSEG-WVIECCAANLFWRKGGV--- 186 (268)
T ss_pred ccChhHhhCCEEEEEeccccCCCCCccCcchhhhHHHHHHHHHHHhcCCCEEEEECCCC-CEEEccceEEEEEECCE---
Confidence 655555578999988876543 3468988875444444578889999997655 67 99999999999999997
Q ss_pred chhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcCC
Q 017872 237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVP 316 (365)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~~ 316 (365)
|+|||++.++||||||+.||++|++.|++|+|+.++++||..|||+|+|||++||+||.+||+
T Consensus 187 ----------------~~TP~~~~~~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~- 249 (268)
T PRK06092 187 ----------------VYTPDLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGE- 249 (268)
T ss_pred ----------------EECCCccccCcccHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECC-
Confidence 999999988999999999999999999999999999999999999999999999999999997
Q ss_pred cccccccccccccccccccccCCCccHHHHHHHHHHH
Q 017872 317 KTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIM 353 (365)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~ 353 (365)
..+ .+||+|++|+++|.
T Consensus 250 ------------------~~~--~~g~~~~~l~~~~~ 266 (268)
T PRK06092 250 ------------------TSY--SSGTLTRYLQPLCE 266 (268)
T ss_pred ------------------EEc--cchHHHHHHHHHHh
Confidence 223 35899999998875
No 15
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-48 Score=370.70 Aligned_cols=257 Identities=18% Similarity=0.147 Sum_probs=204.9
Q ss_pred eEEEECCeeecCCCCCcccccccCCCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 017872 5 RIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRT 84 (365)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~ 84 (365)
.++|+||+++ +.+++.+ .+.+ |||+|||||+++| ++++|++|++||.+||+.|++. |
T Consensus 3 ~~~~~nG~~~-~~~~a~~-~~~~-GdgvFETir~~~g--~~~~l~~Hl~RL~~sa~~l~~~-~----------------- 59 (266)
T PRK09266 3 PLIELNGRPA-TAEDLAA-LALA-NYGHFTSMQVRDG--RVRGLDLHLQRLRRASRELFGA-A----------------- 59 (266)
T ss_pred cEEEECCEEC-CHHHhhh-Hhhc-cceEEEEEEEECC--EEcCHHHHHHHHHHHHHHHhCC-C-----------------
Confidence 5899999999 8777765 4444 9999999999999 8999999999999999999653 2
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecCCCcc
Q 017872 85 PSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFV 164 (365)
Q Consensus 85 ~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~ 164 (365)
++ .+.+++.+.+.+ .++..+++||++++++.+. .|.++....+++++.+.|+++.
T Consensus 60 ----~~----~~~l~~~l~~~~----------~~~~~~~~ir~~v~r~~g~------~~~~~~~~~~~~~i~~~~~~~~- 114 (266)
T PRK09266 60 ----LD----DDRVRAQLRAAL----------AAGPADASVRVTVFAPDFD------FRNPLADVAPDVLVATSPPADG- 114 (266)
T ss_pred ----CC----HHHHHHHHHHHH----------hcCCCcEEEEEEEEecCcc------cCCCCCCCCceEEEEEecCCcC-
Confidence 12 234444443221 1234579999999986442 2322233457778877775432
Q ss_pred ccccCCCcEEEEecccccCCcccccchhhcHHHHHHhCCCCCcEEEEeC-CCCeEEecCcceEEEEEcCCCCcchhhhhh
Q 017872 165 FGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSN-DGDQLLEGSITNFFVVCRKDNSEAEDKFLQ 243 (365)
Q Consensus 165 ~~~~~~Gv~l~~~~~~r~~~~~K~~~~~~~~~~l~~a~~~g~de~lL~~-~gg~v~Egs~sN~F~v~~~~~~~~~~~~~~ 243 (365)
...|+++.+++..|..+.+|+.+|........+|+++|+||+|+.+ +| +|+||+++|+|++++++
T Consensus 115 ---~~~~v~l~~~~~~r~~~~~K~~~~l~~vla~~~a~~~g~de~l~ln~~g-~v~E~~~sNlf~v~~~~---------- 180 (266)
T PRK09266 115 ---PAGPLRLQSVPYERELPHIKHVGTFGQLHLRRLAQRAGFDDALFVDPDG-RVSEGATWNLGFWDGGA---------- 180 (266)
T ss_pred ---CCCCeEEEEEEecccCCCCCCCCcHHHHHHHHHHHHcCCCeEEEEcCCC-cEEEcCceEEEEEECCE----------
Confidence 2478999888888888899998875543444568889999997555 66 99999999999999987
Q ss_pred ccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcCCccccccc
Q 017872 244 TCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQE 323 (365)
Q Consensus 244 ~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~~~~~~~~~ 323 (365)
|+||+. ++||||||+.|+++|+++|++|+|+.++++||..|||+|+|||++||+||.+||+
T Consensus 181 ---------l~TP~~--~~L~GItR~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~-------- 241 (266)
T PRK09266 181 ---------VVWPQA--PALPGVTMALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDD-------- 241 (266)
T ss_pred ---------EECCCC--CccchHHHHHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECC--------
Confidence 999984 7999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccccccCCCccHHHHHHHHHHHH
Q 017872 324 SDCWNDIAWEQKLFEGGPGMITKTIQEEIME 354 (365)
Q Consensus 324 ~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~ 354 (365)
. .+.+ .||+|++|++.|++
T Consensus 242 -~---------~~~~--~~~~~~~l~~~~~~ 260 (266)
T PRK09266 242 -V---------ALPD--SHALLELLRRAYEA 260 (266)
T ss_pred -E---------ECCC--CchHHHHHHHHHHh
Confidence 2 2322 27999999999965
No 16
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=2.2e-47 Score=360.41 Aligned_cols=244 Identities=25% Similarity=0.310 Sum_probs=198.1
Q ss_pred CCCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 017872 28 ERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMN 107 (365)
Q Consensus 28 ~G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~~~ 107 (365)
+|||+|||||+++| ++++|++|++||.+||+.|+|+.| ++.+.+.+.+.+++.
T Consensus 6 ~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~sa~~l~~~~~---------------------~~~~~~~~~i~~~~~---- 58 (256)
T cd00449 6 YGDGVFEGLRAGKG--RLFRLDEHLDRLNRSAKRLGLPIP---------------------YDREELREALKELVA---- 58 (256)
T ss_pred ccceEEEEEEEcCc--EEEChHHHHHHHHHHHHHhCCCCC---------------------CCHHHHHHHHHHHHH----
Confidence 49999999999998 899999999999999999999744 123333344444332
Q ss_pred hhhhhhhhhcCCCcceEEEEEEEecCCC-CCCccCCCCCCCCcceeEEEEeecCCCccccccCCCcEEEEeccccc----
Q 017872 108 EALPIALKERRDGEELAVTVLVSGDYGK-LSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRD---- 182 (365)
Q Consensus 108 ~~l~~~l~~~~~~~~~~iri~vt~g~~~-~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~Gv~l~~~~~~r~---- 182 (365)
.++..+++||++|++|.+. ++.+ +....+++++.+.|++++ ...+.+|+++.++...|.
T Consensus 59 ---------~~~~~~~~ir~~v~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~ 122 (256)
T cd00449 59 ---------ANNGASLYIRPLLTRGVGGLGVAP------PPSPEPTFVVFASPVGAY-AKGGEKGVRLITSPDRRRAAPG 122 (256)
T ss_pred ---------hCCCCCEEEEEEEEecccccCCCC------CCCCCcEEEEEEeecccc-ccccCCCeEEEEeeeEEeCCCC
Confidence 3455689999999998642 2211 234567888888888664 334568999998887763
Q ss_pred -CCcccccchhhcHHHHHHhCCCCCcEEEEeC-CCCeEEecCcceEEEEEcCCCCcchhhhhhccCCCCceEEEecCCCC
Q 017872 183 -VAEAKYSDWVRLRKPLEKLRPPSVTELLLSN-DGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISD 260 (365)
Q Consensus 183 -~~~~K~~~~~~~~~~l~~a~~~g~de~lL~~-~gg~v~Egs~sN~F~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~ 260 (365)
.+.+|+.+|........+|++.|+||+||.+ +| +|+||+++|||++++++ |+|||+++
T Consensus 123 ~~~~~Kt~~~~~~~~a~~~a~~~g~de~llld~~g-~v~E~s~sNlf~~~~~~-------------------l~TP~~~~ 182 (256)
T cd00449 123 GTGDAKTGGNLNSVLAKQEAAEAGADEALLLDDNG-YVTEGSASNVFIVKDGE-------------------LVTPPLDG 182 (256)
T ss_pred CCccchhhCCHHHHHHHHHHHHcCCCEEEEECCCC-cEEEcCceEEEEEECCE-------------------EEeCCCCC
Confidence 4568998884444445567889999997655 56 99999999999999987 99999999
Q ss_pred CccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcCCcccccccccccccccccccccCCC
Q 017872 261 GVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGG 340 (365)
Q Consensus 261 giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 340 (365)
|+|+||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||++|++ ..++.+.
T Consensus 183 g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~------------------~~~~~~~ 244 (256)
T cd00449 183 GILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDG------------------RGIGDGK 244 (256)
T ss_pred CcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECC------------------eecCCCC
Confidence 9999999999999999999999999999999999999999999999999999998 2344567
Q ss_pred ccHHHHHHHHHH
Q 017872 341 PGMITKTIQEEI 352 (365)
Q Consensus 341 ~G~vt~~L~~~~ 352 (365)
+||+|++|+++|
T Consensus 245 ~~~~~~~l~~~~ 256 (256)
T cd00449 245 PGPVTRKLRELL 256 (256)
T ss_pred CCHHHHHHHHhC
Confidence 899999998875
No 17
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=2e-47 Score=362.97 Aligned_cols=251 Identities=22% Similarity=0.208 Sum_probs=200.6
Q ss_pred EECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 017872 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRT 84 (365)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~ 84 (365)
|+||+.. +.++++|++ |+|+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 1 ~~nG~~~-----~~i~~~d~g~~~G~gvFEt~r~~~G--~~~~l~~Hl~RL~~Sa~~l~~~~~----------------- 56 (261)
T TIGR03461 1 WVNGVLQ-----TQISVSDRGLQYGDGCFTTAKVRNG--KIELLDLHLERLQDAAARLGIPLP----------------- 56 (261)
T ss_pred CcCCccc-----CccCcccccccccceeEEEEEEECC--EeccHHHHHHHHHHHHHhhCCCCC-----------------
Confidence 6899964 678888775 9999999999999 899999999999999999999755
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCC-CCCCccCCCCCCCCcceeEEEEeecCCCc
Q 017872 85 PSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVHFSGYVPF 163 (365)
Q Consensus 85 ~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~-~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 163 (365)
..+++++.+.+.+ +.+ .++++|++|++|.+ .++.. +.+..+.+++.+.|+++.
T Consensus 57 ---------~~~~l~~~~~~~~---------~~~--~~~~ir~~v~~g~~~~~~~~------~~~~~~~~~i~~~~~~~~ 110 (261)
T TIGR03461 57 ---------DWDALREEMAQLA---------AGY--SLGVLKVIISRGSGGRGYSP------PGCSDPTRIISVSPYPAH 110 (261)
T ss_pred ---------CHHHHHHHHHHHH---------HhC--CCeEEEEEEecCCCCCCCCC------CCCCCCcEEEEeccCccc
Confidence 1233444443221 122 36899999998753 22221 123446778888888765
Q ss_pred cccccCCCcEEEEeccccc----CCcccccchhhcHHHHHHhCCCCCcEEEEeC-CCCeEEecCcceEEEEEcCCCCcch
Q 017872 164 VFGVEGTGARLALVGRGRD----VAEAKYSDWVRLRKPLEKLRPPSVTELLLSN-DGDQLLEGSITNFFVVCRKDNSEAE 238 (365)
Q Consensus 164 ~~~~~~~Gv~l~~~~~~r~----~~~~K~~~~~~~~~~l~~a~~~g~de~lL~~-~gg~v~Egs~sN~F~v~~~~~~~~~ 238 (365)
+..++.+|+++.+++..+. .+.+|+.+|........+|++.|+||+||.+ +| +|+|++++|||++++++
T Consensus 111 ~~~~~~~g~~~~~~~~~~~~~~~~~~~Kt~~y~~~~~a~~~A~~~g~de~llln~~g-~v~E~s~sNif~~~~~~----- 184 (261)
T TIGR03461 111 YSAWQQQGIRLGVSPVRLGRNPLLAGIKHLNRLEQVLIKAELENSEADEALVLDTDG-NVVECTAANIFWRKGNQ----- 184 (261)
T ss_pred ChhHhcCCEEEEEeccccCCCCCCcCccccccHHHHHHHHHhhhcCCCEEEEECCCC-CEEEeccEEEEEEECCE-----
Confidence 5455668999888876543 2468998886555555678899999997555 66 99999999999999987
Q ss_pred hhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcCCcc
Q 017872 239 DKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKT 318 (365)
Q Consensus 239 ~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~~~~ 318 (365)
|+|||+++++|+||||+.||++|++.|++|+|+.++++||..|||+|+|||++||+||++||+
T Consensus 185 --------------l~TP~~~~~~L~GItR~~il~~~~~~g~~v~E~~i~~~eL~~ade~f~~ns~~gi~pV~~id~--- 247 (261)
T TIGR03461 185 --------------VFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAIGE--- 247 (261)
T ss_pred --------------EECCCccccCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEeCCccceEEEEEECC---
Confidence 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccccccccccCCCccHHHHHHH
Q 017872 319 WELQESDCWNDIAWEQKLFEGGPGMITKTIQ 349 (365)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~ 349 (365)
..+ .+||+|++|+
T Consensus 248 ----------------~~~--~~~~~~~~l~ 260 (261)
T TIGR03461 248 ----------------TSY--PSRTLTRLLQ 260 (261)
T ss_pred ----------------EEe--cchHHHHHhh
Confidence 233 2479999885
No 18
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=2.5e-47 Score=378.62 Aligned_cols=281 Identities=15% Similarity=0.183 Sum_probs=213.1
Q ss_pred EECCeeecCCCCCcccccccC---CCeEEEEEEEEc---CcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017872 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHN---NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (365)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~---g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (365)
|+||+++ +.+++.++++|++ |||||||+|+++ |..++|+|++|++||.+||+.|+|+.+
T Consensus 42 ~~nG~~v-p~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~L~i~~~-------------- 106 (356)
T PRK13357 42 WHDARLV-PYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPEL-------------- 106 (356)
T ss_pred ccCCeEe-eCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCCCCC--------------
Confidence 8999999 9889999999985 999999999984 433588899999999999999999632
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecCC
Q 017872 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (365)
+.+.+.+.+.++++ +.- ..+........+++|++++++.+. +|..+. ..+++++.+.|++
T Consensus 107 --------~~~~l~~~i~~li~----~n~-~~~~~~~~~~~~~ir~~v~rg~~~------~g~~~~-~~~~~~i~~~~~~ 166 (356)
T PRK13357 107 --------PEELFLEAVKQLVK----ADR-DWVPPYGEGASLYLRPFMIATEPF------LGVKPA-EEYIFCVIASPVG 166 (356)
T ss_pred --------CHHHHHHHHHHHHH----hcc-cccCCCCCCccEEEEEEEEccCCc------ccccCC-CccEEEEEEEech
Confidence 23334444444442 110 000000012468999999988643 233222 3478888888776
Q ss_pred CccccccCCCcEEEEe-cccccC----Ccccc-cchhhcHHHHHHhCCCCCcEEEEeC---CCCeEEecCcceEEEEEcC
Q 017872 162 PFVFGVEGTGARLALV-GRGRDV----AEAKY-SDWVRLRKPLEKLRPPSVTELLLSN---DGDQLLEGSITNFFVVCRK 232 (365)
Q Consensus 162 ~~~~~~~~~Gv~l~~~-~~~r~~----~~~K~-~~~~~~~~~l~~a~~~g~de~lL~~---~gg~v~Egs~sN~F~v~~~ 232 (365)
+.... ..+|+++.++ .+.|.. .++|+ .||........+|+++|+||+|+.+ +| +|+|++++|||+|+++
T Consensus 167 ~~~~~-~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G-~V~E~s~sNlF~v~~~ 244 (356)
T PRK13357 167 AYFKG-GVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHT-YIEEVGGMNFFFITKD 244 (356)
T ss_pred hhccc-CCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCC-EEEEcCcEEEEEEECC
Confidence 43222 1257888776 555643 35788 6775544455578899999997544 45 9999999999999998
Q ss_pred CCCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHH------Hhhhceeeeeecccc
Q 017872 233 DNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQ------HELWKEAFITSSLRV 306 (365)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~e------L~~adEvFltnS~~g 306 (365)
+ ++|||++.+|||||||+.||++|+++|++|+|+.++++| |.+|||+|+|||+.|
T Consensus 245 ~-------------------l~TPpl~~giL~GItR~~vlela~~~Gi~v~e~~i~~~el~~~~~L~~AdevFltnS~~g 305 (356)
T PRK13357 245 G-------------------TVTPPLSGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAV 305 (356)
T ss_pred E-------------------EEECCCCCCCCcchHHHHHHHHHHHCCCeEEEEecCHHHhhhhhccCcceEEEEcccccE
Confidence 7 999999999999999999999999999999999999999 899999999999999
Q ss_pred eEEEEEEcCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhc
Q 017872 307 LQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGL 358 (365)
Q Consensus 307 i~PV~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~ 358 (365)
|+||++|++.. .. ..+.+|.+||++++|+++|++.+..
T Consensus 306 i~PV~~id~~~-------~~-------~~~~~g~~g~~t~~L~~~~~~~~~~ 343 (356)
T PRK13357 306 ITPIGGIKYKD-------KE-------FVIGDGEVGPVTQKLYDELTGIQFG 343 (356)
T ss_pred EEEEEEEEeCC-------CE-------EEcCCCCCChHHHHHHHHHHHHhcC
Confidence 99999998410 00 1344567999999999999987763
No 19
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=2.7e-47 Score=366.53 Aligned_cols=262 Identities=20% Similarity=0.230 Sum_probs=202.9
Q ss_pred ccccccC---CCeEEEEEEEEc---CcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 017872 22 VSTFLQE---RRGAYTTTRTHN---NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWE 95 (365)
Q Consensus 22 is~~~~~---G~GvFEt~r~~~---g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (365)
++++|++ |||||||+|+++ |++++|+|++|++||.+||+.|+|+ | ++.+.+.
T Consensus 2 i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~-~---------------------~~~~~l~ 59 (279)
T cd01557 2 LHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLP-P---------------------FSVEEFI 59 (279)
T ss_pred cCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCC-C---------------------CCHHHHH
Confidence 4566664 999999999999 2128999999999999999999997 4 1233344
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecCCCccccccCCCcEEE
Q 017872 96 SMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLA 175 (365)
Q Consensus 96 ~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~Gv~l~ 175 (365)
+.+.+++..+ . .........+++||++|+++.+. .|..+. ..+++++.+.|+++.... +..|+++.
T Consensus 60 ~~i~~~i~~~---~---~~~~~~~~~~~~ir~~v~rg~~~------~g~~~~-~~~~~~i~~~~~~~~~~~-~~~gv~l~ 125 (279)
T cd01557 60 DAIKELVKLD---A---DWVPYGGGASLYIRPFIFGTDPQ------LGVSPA-LEYLFAVFASPVGAYFKG-GEKGVSAL 125 (279)
T ss_pred HHHHHHHHhc---c---ccCCCCCCCCEEEEEEEEecccc------CCcCCC-CccEEEEEEEEccccccC-CCCCeEEE
Confidence 4444444210 0 00000133578999999998643 233323 457888888887654433 45799999
Q ss_pred EecccccCC----cccc-cchhhcHHHHHHhCCCCCcEEEE-eCC-CCeEEecCcceEEEEEcCCCCcchhhhhhccCCC
Q 017872 176 LVGRGRDVA----EAKY-SDWVRLRKPLEKLRPPSVTELLL-SND-GDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNS 248 (365)
Q Consensus 176 ~~~~~r~~~----~~K~-~~~~~~~~~l~~a~~~g~de~lL-~~~-gg~v~Egs~sN~F~v~~~~~~~~~~~~~~~~~~~ 248 (365)
++++.|..+ .+|+ .||........+|+++|+||+|| |.+ | +|+|++++|||+|++++
T Consensus 126 ~~~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~g~de~l~ld~~~g-~v~E~~~sNlf~v~~~~--------------- 189 (279)
T cd01557 126 VSSFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDGAHG-YVAEVGTMNIFFVKDGE--------------- 189 (279)
T ss_pred EeeEEcCCCCCCcccchhhccHHHHHHHHHHHHCCCCEEEEEcCCCC-EEEEeCcEEEEEEECCE---------------
Confidence 988777643 3674 57654444455688999999965 556 7 99999999999999987
Q ss_pred CceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcCCcccccccccccc
Q 017872 249 HSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWN 328 (365)
Q Consensus 249 ~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~~~~~~~~~~~~~~ 328 (365)
|+|||+++++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||++|++ +
T Consensus 190 ----l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~---------~--- 253 (279)
T cd01557 190 ----LITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDY---------R--- 253 (279)
T ss_pred ----EEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEcc---------c---
Confidence 999999989999999999999999999999999999999999999999999999999999998 2
Q ss_pred cccccccc--cCCCccHHHHHHHHHHHHHHh
Q 017872 329 DIAWEQKL--FEGGPGMITKTIQEEIMERAG 357 (365)
Q Consensus 329 ~~~~~~~~--~~g~~G~vt~~L~~~~~~~~~ 357 (365)
.+ +++.+||+|++|++.|.+.++
T Consensus 254 ------~~~~~~~~~gp~~~~l~~~~~~~~~ 278 (279)
T cd01557 254 ------GKEPGEGEVGPVTKKLYDLLTDIQY 278 (279)
T ss_pred ------cccCCCCCCCHHHHHHHHHHHHHhc
Confidence 23 456889999999999988764
No 20
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=9.7e-47 Score=367.99 Aligned_cols=281 Identities=17% Similarity=0.215 Sum_probs=207.7
Q ss_pred EECCeeecCCCCCcccccccC---CCeEEEEEEEE---cCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017872 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (365)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~---~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (365)
|+||+++ +.+++.++++|++ |||+|||||++ +|..++|+|++|++||.+||+.|+|+.|
T Consensus 1 ~~nG~~~-~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~-------------- 65 (313)
T TIGR01123 1 WHNGRLT-PYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPEL-------------- 65 (313)
T ss_pred CCCCEEE-ECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCC--------------
Confidence 6899999 8888999999995 99999999999 7722278899999999999999999633
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecCC
Q 017872 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (365)
+.+.+.+.+.+++..+ .. .+........+++|++|+++.+. .|..+. ..+.+++.+.|++
T Consensus 66 --------~~~~l~~~l~~~~~~~---~~--~~~~~~~~~~~~ir~~v~~~~~~------~g~~~~-~~~~~~i~~~~~~ 125 (313)
T TIGR01123 66 --------PDELFLEALRQLVKAN---KD--WVPPYGSGASLYLRPFVIGTEPN------LGVRPA-PEYLFYVFASPVG 125 (313)
T ss_pred --------CHHHHHHHHHHHHHHc---cc--cCCCCCCCCcEEEEeEEEecCCc------cccCCC-CccEEEEEEEEch
Confidence 2333444444444211 00 00000113468999999988642 233222 2477888888765
Q ss_pred CccccccCCCcEEEE-eccccc----CCcccc-cchhhcHHHHHHhCCCCCcEEE-EeCCC-CeEEecCcceEEEEEc-C
Q 017872 162 PFVFGVEGTGARLAL-VGRGRD----VAEAKY-SDWVRLRKPLEKLRPPSVTELL-LSNDG-DQLLEGSITNFFVVCR-K 232 (365)
Q Consensus 162 ~~~~~~~~~Gv~l~~-~~~~r~----~~~~K~-~~~~~~~~~l~~a~~~g~de~l-L~~~g-g~v~Egs~sN~F~v~~-~ 232 (365)
+..... ..++++.+ ..+.|. .+++|+ .||........+|+++|+||+| +|.+| |+|+|++++|||+|++ +
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~g 204 (313)
T TIGR01123 126 AYFKGG-LAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDG 204 (313)
T ss_pred hhcccc-ccceeEEecccceecCCCCCccceeccccHHHHHHHHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcCC
Confidence 322110 12345544 334444 345788 4775544445568899999996 55566 2499999999999996 5
Q ss_pred CCCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhh----ceeeeeecccceE
Q 017872 233 DNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELW----KEAFITSSLRVLQ 308 (365)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~a----dEvFltnS~~gi~ 308 (365)
+ |+|||++.++|+||||+.||++|+++|++|+|++++++||.+| ||+|+|||+.||+
T Consensus 205 ~-------------------l~Tp~l~~~~L~GItR~~vi~l~~~~Gi~v~e~~i~~~~l~~A~~~~devfltnS~~gi~ 265 (313)
T TIGR01123 205 E-------------------LVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAAVIT 265 (313)
T ss_pred E-------------------EEeCCCCCCCCcchHHHHHHHHHHHcCCeEEEEecCHHHHHHHHhcCCEEEEccCceEEE
Confidence 6 9999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEE--cCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhcc
Q 017872 309 HVESI--QVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLG 359 (365)
Q Consensus 309 PV~~i--~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~ 359 (365)
||++| |+ +. ..+..|.+||++++|+++|.+.+...
T Consensus 266 PV~~i~~d~---------~~-------~~~~~g~~g~~~~~l~~~~~~~~~~~ 302 (313)
T TIGR01123 266 PVGEIQHGG---------KE-------VVFASGQPGEVTKALYDELTDIQYGD 302 (313)
T ss_pred EEEEEEECC---------eE-------EEcCCCCCChHHHHHHHHHHHHhcCC
Confidence 99999 44 11 01345679999999999999987643
No 21
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=2.1e-46 Score=371.77 Aligned_cols=282 Identities=20% Similarity=0.228 Sum_probs=214.5
Q ss_pred EEEECCeeecCCCCCcccccccC---CCeEEEEEEEE---cCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 017872 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGL 79 (365)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~---~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~ 79 (365)
.+|+||+++ +.+++.++++|++ |||||||||+| +|..++|+|++|++||.+||++|+|+.|
T Consensus 44 ~~~~ng~~v-~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~~Sa~~L~i~~p------------ 110 (355)
T PLN03117 44 ESFSEGKIV-PYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPP------------ 110 (355)
T ss_pred CeEECCEEE-EchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHHHHHHHhCCCCC------------
Confidence 689999999 8889999999885 99999999999 6733378999999999999999999754
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeec
Q 017872 80 EPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSG 159 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~ 159 (365)
+.+.+.+.+.++++.+ ... +. .......|+|++++++.+. .|..+. ..+.+++++.|
T Consensus 111 ----------~~~~l~~~i~~lv~~n-~~~----i~-~~~~~~~yir~~~~g~~~~------~g~~~~-~~~~~~i~~~p 167 (355)
T PLN03117 111 ----------SLEQFVEAVKQTVLAN-KKW----VP-PPGKGTLYIRPLLIGSGAV------LGVAPA-PEYTFLIYASP 167 (355)
T ss_pred ----------CHHHHHHHHHHHHHhc-ccc----cc-CCCCCcEEEEEEEEEecCc------cCcCCC-CCcEEEEEEEe
Confidence 2334445555554311 000 00 0013467999999876432 132222 34677888888
Q ss_pred CCCccccccCCCcEEEEec-ccccC----Cccccc-chhhcHHHHHHhCCCCCcEEE-EeCC-CCeEEecCcceEEEEEc
Q 017872 160 YVPFVFGVEGTGARLALVG-RGRDV----AEAKYS-DWVRLRKPLEKLRPPSVTELL-LSND-GDQLLEGSITNFFVVCR 231 (365)
Q Consensus 160 ~~~~~~~~~~~Gv~l~~~~-~~r~~----~~~K~~-~~~~~~~~l~~a~~~g~de~l-L~~~-gg~v~Egs~sN~F~v~~ 231 (365)
++++.. ..+|+++.++. +.|.. +++|+. ||........+|+++|+||+| ||.+ +++|+|++++|||+|++
T Consensus 168 ~~~~~~--~~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~~ 245 (355)
T PLN03117 168 VGNYHK--ASSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKG 245 (355)
T ss_pred cccccc--CCCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEEC
Confidence 754332 24789988865 45543 358885 775544444568899999996 5543 45999999999999999
Q ss_pred CCCCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEE
Q 017872 232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVE 311 (365)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~ 311 (365)
++ |+||+++++|||||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.
T Consensus 246 ~~-------------------l~TP~l~~~iL~GItR~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFltnT~~~I~PV~ 306 (355)
T PLN03117 246 NI-------------------VSTPPTSGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVE 306 (355)
T ss_pred CE-------------------EEeCCCcCCCCCCHHHHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEccCcceEEEEE
Confidence 87 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhcc
Q 017872 312 SIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLG 359 (365)
Q Consensus 312 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~ 359 (365)
+|+..+ + +..+.++. ||+|++|+++|.+++...
T Consensus 307 ~i~~~~-------~-------~~~~~~~~-~~~~~~l~~~~~~~~~g~ 339 (355)
T PLN03117 307 TVTFHD-------K-------KVKYRTGE-EALSTKLHLILTNIQMGV 339 (355)
T ss_pred EEEecC-------c-------eEEeCCCC-ChHHHHHHHHHHHHhCCC
Confidence 998610 0 01223443 899999999999987654
No 22
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=2.2e-46 Score=376.48 Aligned_cols=280 Identities=19% Similarity=0.206 Sum_probs=217.7
Q ss_pred EEECCeeecCCCCCcccccccC---CCeEEEEEEEE---cCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 017872 7 VFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (365)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~---~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~ 80 (365)
-|.||+++ +.+++.++++|++ |||+|||||+| +|++++|++++|++||.+||++|+|+.|
T Consensus 95 ~w~ng~iv-p~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~~RL~~SA~rL~lp~~------------- 160 (403)
T PLN02782 95 EFSKGELQ-RFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAP------------- 160 (403)
T ss_pred cEeCCEEE-ECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCcCCC-------------
Confidence 48999999 9889999988774 99999999998 4544579999999999999999999754
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecC
Q 017872 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGY 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (365)
+.+.+.+.++++++.+ ..+++ ......+|||++++++.+. +|..+. ..+.++|.+.|+
T Consensus 161 ---------~~e~l~~~i~~lv~~n-~~~vP-----~~~~~~lyiRp~v~g~~~~------lG~~~~-~~~~~~i~~~p~ 218 (403)
T PLN02782 161 ---------TVEQFVEAVKETVLAN-KRWVP-----PPGKGSLYIRPLLMGSGAV------LGLAPA-PEYTFLIYVSPV 218 (403)
T ss_pred ---------CHHHHHHHHHHHHHhc-cccCC-----CCCCccEEEEEEEEecCCC------cCcCCC-CCcEEEEEEEEC
Confidence 2344445555555321 00110 1123478999999987542 244333 357888999888
Q ss_pred CCccccccCCCcEEEEec-ccccCC----ccccc-chhhcHHHHHHhCCCCCcEEE-EeC--CCCeEEecCcceEEEEEc
Q 017872 161 VPFVFGVEGTGARLALVG-RGRDVA----EAKYS-DWVRLRKPLEKLRPPSVTELL-LSN--DGDQLLEGSITNFFVVCR 231 (365)
Q Consensus 161 ~~~~~~~~~~Gv~l~~~~-~~r~~~----~~K~~-~~~~~~~~l~~a~~~g~de~l-L~~--~gg~v~Egs~sN~F~v~~ 231 (365)
+++... ..+++++.++. +.|..+ ++|+. ||........+|+++|+||+| ||. +| +|+|++++|||+|++
T Consensus 219 ~~~~~~-g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g-~V~E~~~sNlF~v~~ 296 (403)
T PLN02782 219 GNYFKE-GVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKK-YLEEVSSCNIFIVKD 296 (403)
T ss_pred cccccc-CCccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCC-EEEEcCcEEEEEEEC
Confidence 654311 12367777764 667644 68887 886665566678999999996 553 56 999999999999999
Q ss_pred CCCCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEE
Q 017872 232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVE 311 (365)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~ 311 (365)
++ |+|||++.+|||||||+.||++|+++|++|+|+.++++||.+|||||+|||+.+|+||.
T Consensus 297 ~~-------------------l~TP~l~~~iLpGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~ 357 (403)
T PLN02782 297 NV-------------------ISTPAIKGTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVG 357 (403)
T ss_pred CE-------------------EEcCCCcCCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEccCcceEEEEE
Confidence 87 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EE--cCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhcc
Q 017872 312 SI--QVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLG 359 (365)
Q Consensus 312 ~i--~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~ 359 (365)
+| ++ +. ..+.++.+||+|++|+++|.++....
T Consensus 358 ~I~~~g---------~~-------~~~~~g~~Gpvt~~L~~~l~~iq~G~ 391 (403)
T PLN02782 358 SITYKG---------KR-------VSYGEGGFGTVSQQLYTVLTSLQMGL 391 (403)
T ss_pred EEEECC---------EE-------EeCCCCCcCHHHHHHHHHHHHHhcCC
Confidence 99 55 11 11245678999999999999887654
No 23
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=4.4e-46 Score=351.75 Aligned_cols=238 Identities=26% Similarity=0.329 Sum_probs=193.1
Q ss_pred CCCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 017872 28 ERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMN 107 (365)
Q Consensus 28 ~G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~~~ 107 (365)
+|||+|||||+++| ++++|++|++||.+||+.|+|+ | ++.+.+.+.+.+++
T Consensus 6 ~GdgvFEt~~~~~g--~~~~l~~Hl~RL~~Sa~~l~~~-~---------------------~~~~~l~~~i~~~i----- 56 (249)
T cd01559 6 YGDGVFETMRALDG--RLFLLDAHLARLERSARRLGIP-E---------------------PDLPRLRAALESLL----- 56 (249)
T ss_pred ccceeEEEEEEECC--EEccHHHHHHHHHHHHHhcCcC-C---------------------CCHHHHHHHHHHHH-----
Confidence 49999999999999 8999999999999999999997 4 12333444444333
Q ss_pred hhhhhhhhhcCCCcceEEEEEEEecCC-CCCCccCCCCCCCCcceeEEEEeecCCCccccccCCCcEEEEeccccc----
Q 017872 108 EALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRD---- 182 (365)
Q Consensus 108 ~~l~~~l~~~~~~~~~~iri~vt~g~~-~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~Gv~l~~~~~~r~---- 182 (365)
+.++..+++||++|++|.+ .+|.+ +.+..+.+++.+.|+++ ..+.+|+++.+++..|.
T Consensus 57 --------~~~~~~~~~ir~~v~rg~~~~~~~~------~~~~~~~~~i~~~~~~~---~~~~~gv~l~~~~~~~~~~~~ 119 (249)
T cd01559 57 --------AANDIDEGRIRLILSRGPGGRGYAP------SVCPGPALYVSVIPLPP---AWRQDGVRLITCPVRLGEQPL 119 (249)
T ss_pred --------HhCCCCceEEEEEEecCCCCCCCCC------CCCCCCEEEEEeccCCH---HHHhCCcEEEEcccccCCCCC
Confidence 2344568899999998864 22221 12345778888887654 23457999999887763
Q ss_pred CCcccccchhhcHHHHHHhCCCCCcEEEEe-CCCCeEEecCcceEEEEEcCCCCcchhhhhhccCCCCceEEEecCCCCC
Q 017872 183 VAEAKYSDWVRLRKPLEKLRPPSVTELLLS-NDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDG 261 (365)
Q Consensus 183 ~~~~K~~~~~~~~~~l~~a~~~g~de~lL~-~~gg~v~Egs~sN~F~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~g 261 (365)
...+|+.||........+|++.|+||+|+. .+| +|+||+++|||++++++ |+|||++.|
T Consensus 120 ~~~~Kt~ny~~~~~a~~~a~~~g~de~l~l~~~g-~v~E~~~~Nif~~~~~~-------------------~~TP~~~~g 179 (249)
T cd01559 120 LAGLKHLNYLENVLAKREARDRGADEALFLDTDG-RVIEGTASNLFFVKDGE-------------------LVTPSLDRG 179 (249)
T ss_pred CCCcchhhhHHHHHHHHHHHhcCCCEEEEEcCCC-CEEEecceEEEEEECCE-------------------EECCCcccC
Confidence 346898887665555566888999999754 466 99999999999999987 999999999
Q ss_pred ccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcCCcccccccccccccccccccccCCCc
Q 017872 262 VLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGP 341 (365)
Q Consensus 262 iLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 341 (365)
+||||||+.|+++|++.|++++|+.++++||..|||+|+|||++||+||++|++ ..+.+
T Consensus 180 ~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~~gi~pV~~id~---------------------~~~~~ 238 (249)
T cd01559 180 GLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAIDD---------------------HDGPP 238 (249)
T ss_pred ccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCccceeEEEEECC---------------------cccCc
Confidence 999999999999999999999999999999999999999999999999999996 13468
Q ss_pred cHHHHHHHHHH
Q 017872 342 GMITKTIQEEI 352 (365)
Q Consensus 342 G~vt~~L~~~~ 352 (365)
||++++|+++|
T Consensus 239 ~~~~~~l~~~~ 249 (249)
T cd01559 239 GPLTRALRELL 249 (249)
T ss_pred cHHHHHHHHhC
Confidence 99999999876
No 24
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.2e-45 Score=351.49 Aligned_cols=270 Identities=24% Similarity=0.324 Sum_probs=216.7
Q ss_pred eEEEECCeeecCCCCCccccccc---CCCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017872 5 RIVFSNGVVSQASDTPSVSTFLQ---ERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (365)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~---~G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (365)
.++|+||+++ +.+++.++++++ +|+|+|||+|+++| ++|+|++|++||.+||+.|+|+.|.
T Consensus 2 ~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~vFE~~r~~~g--~~~~l~~H~~RL~~Sa~~l~~~~~~------------- 65 (284)
T COG0115 2 GKIWVNGELV-PEEDAKLSVLDRGLHYGDGVFETLRAYNG--KLFRLDEHLARLKRSAKRLGLPRPE------------- 65 (284)
T ss_pred CeEeECCEEc-cCcccccCcccceeccccceeEEEEEeCC--cccChHHHHHHHHHHHHHhCCCCCC-------------
Confidence 4789999999 988899998886 49999999999998 8999999999999999999998661
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecCC
Q 017872 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (365)
+.+.+..+....+ .+.+.....|+|+++.++.+. +|..+ +..+.+.+.+.|++
T Consensus 66 ------------~~~~~~~~~~~~~--------~~~~~~~~~y~r~~~~~~~~~------~~~~~-~~~~~~~v~~~~~~ 118 (284)
T COG0115 66 ------------SEEEIELLIQLLL--------AKNNLVPGLYIRPLVRGGGGG------LGVRD-ATEPTLIVAASPVG 118 (284)
T ss_pred ------------CHHHHHHHHHHHH--------HhhCCCCceEEEEEEEeecCC------CCcCC-CCccEEEEEEEecc
Confidence 2333333332111 112223348899988876654 23333 45678889999998
Q ss_pred Ccccccc-CCCcEEEEecc-cccCC----cccccchhhcHHHHHHhCCCCCcEEEEeC-CCCeEEecCcceEEEEE-cCC
Q 017872 162 PFVFGVE-GTGARLALVGR-GRDVA----EAKYSDWVRLRKPLEKLRPPSVTELLLSN-DGDQLLEGSITNFFVVC-RKD 233 (365)
Q Consensus 162 ~~~~~~~-~~Gv~l~~~~~-~r~~~----~~K~~~~~~~~~~l~~a~~~g~de~lL~~-~gg~v~Egs~sN~F~v~-~~~ 233 (365)
++..... ..|+.+.++.. ++..+ ..|+.||........+|++.|+||+|+.+ +| +|+||+++|||+|+ ||+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k~~~y~~~~~a~~~A~~~G~~eal~~~~~G-~V~Eg~~sNvf~v~~dg~ 197 (284)
T COG0115 119 AYLKGGRLEKGVVLVISSPVRRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLLDEDG-YVTEGAGSNVFFVKGDGV 197 (284)
T ss_pred cccCcccccCCeEEEEeehhhccCCCcchhhhhcccHHHHHHHHHHHHCCCCEEEEecCCC-eEEEcCcceEEEEEECCE
Confidence 8654322 35766666543 44433 37788887766666788999999997655 66 99999999999999 666
Q ss_pred CCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEE
Q 017872 234 NSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESI 313 (365)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i 313 (365)
++|||++.++||||||+.||++|+++|++++|++++.+||..|||+|+|||+.+|+||.+|
T Consensus 198 -------------------~~TP~~~~~iL~GitR~~li~la~~~G~~v~E~~i~~~~l~~adevf~t~t~~~v~PV~~i 258 (284)
T COG0115 198 -------------------LVTPPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFLTNTAAGVTPVGLI 258 (284)
T ss_pred -------------------EECCCCCCCccccHHHHHHHHHHHHcCceEEEeecCHHHHhhCCEEEEEccceEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhc
Q 017872 314 QVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGL 358 (365)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~ 358 (365)
++ .. +++||+|++|+++|.+.+..
T Consensus 259 ~~-------------------~~--~~~gpit~~l~~~~~~~~~~ 282 (284)
T COG0115 259 DG-------------------RV--GQPGPVTKKLRELLTDIQYG 282 (284)
T ss_pred CC-------------------cc--CCCChHHHHHHHHHHHHhcc
Confidence 76 22 68999999999999988754
No 25
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=1.2e-44 Score=362.48 Aligned_cols=278 Identities=19% Similarity=0.217 Sum_probs=213.6
Q ss_pred EEECCeeecCCCCCcccccccC---CCeEEEEEEEE---cCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 017872 7 VFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (365)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~---~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~ 80 (365)
.|.||+++ +.+++.+++.|++ |||+|||||+| +|+..+|+++.|++||.+||++|+|+.|
T Consensus 81 ~w~~g~iv-p~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~~------------- 146 (388)
T PLN02259 81 EFTQGELS-PYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSP------------- 146 (388)
T ss_pred eEECCEEe-EchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCCc-------------
Confidence 69999999 9889999988874 99999999999 6733338899999999999999999754
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecC
Q 017872 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGY 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (365)
+.+.+.+.+.+++..+ ..+++ .......|||++++++++. +|..+. ..+.+++.+.|+
T Consensus 147 ---------~~e~~~~~i~~lv~~n-~~~vp-----~~~~~~lyiRp~v~g~~~~------lG~~p~-~~~~~~i~~~p~ 204 (388)
T PLN02259 147 ---------SVDQFVNAVKQTALAN-KRWVP-----PAGKGTLYIRPLLMGSGPI------LGLGPA-PEYTFIVYASPV 204 (388)
T ss_pred ---------CHHHHHHHHHHHHHhc-cccCC-----CCCCceEEEEEEEEecCCc------cCcCCC-CCcEEEEEEEec
Confidence 2344555555555321 00110 0123468999989866532 233332 467888999888
Q ss_pred CCccccccCCCc---EEEEe-cccccC----Cccccc-chhhcHHHHHHhCCCCCcEEE-EeC--CCCeEEecCcceEEE
Q 017872 161 VPFVFGVEGTGA---RLALV-GRGRDV----AEAKYS-DWVRLRKPLEKLRPPSVTELL-LSN--DGDQLLEGSITNFFV 228 (365)
Q Consensus 161 ~~~~~~~~~~Gv---~l~~~-~~~r~~----~~~K~~-~~~~~~~~l~~a~~~g~de~l-L~~--~gg~v~Egs~sN~F~ 228 (365)
+++. ..|+ ++.++ ++.|.. .++|+. ||.....+..+|+++|+||+| ||. +| +|+|++++|||+
T Consensus 205 ~~~~----~~g~~~i~l~v~~~~~Ra~p~~~g~~K~~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g-~V~E~~~sNlF~ 279 (388)
T PLN02259 205 GNYF----KEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKK-YLEEASSCNVFV 279 (388)
T ss_pred hhhh----hcCcceEEEEeecceeccCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEecCCCCC-EEEEcCcEEEEE
Confidence 6543 2344 45544 466653 458884 886655566678899999996 554 56 999999999999
Q ss_pred EEcCCCCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceE
Q 017872 229 VCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQ 308 (365)
Q Consensus 229 v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~ 308 (365)
|++++ |+|||++.+|||||||+.||++|++.|++|+|+.++++||.+|||+|+|||+.+|+
T Consensus 280 v~~~~-------------------l~TP~l~~~iL~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~V~ 340 (388)
T PLN02259 280 VKGRT-------------------ISTPATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVA 340 (388)
T ss_pred EECCE-------------------EEcCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEcCCcceEE
Confidence 99887 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhcc
Q 017872 309 HVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLG 359 (365)
Q Consensus 309 PV~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~ 359 (365)
||.+|++.. + ...+.+..||+|++|+++|.++....
T Consensus 341 PV~~I~~~~-------~--------~~~~~~~~g~~t~~L~~~l~~iq~G~ 376 (388)
T PLN02259 341 PVGTITYQE-------K--------RVEYKTGDESVCQKLRSVLVGIQTGL 376 (388)
T ss_pred EEEEEecCC-------c--------eEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999610 1 12233345899999999999987654
No 26
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=2.3e-43 Score=352.58 Aligned_cols=282 Identities=18% Similarity=0.191 Sum_probs=212.9
Q ss_pred EEECCeeecCCCCCccccccc---CCCeEEEEEEEEc---CcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 017872 7 VFSNGVVSQASDTPSVSTFLQ---ERRGAYTTTRTHN---NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (365)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~---~G~GvFEt~r~~~---g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~ 80 (365)
-|.+++++ +....++++.++ +|||+|||||+|+ |+..+|+++.|++||.+||++|+||.|
T Consensus 77 ~w~~~~i~-p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~------------- 142 (384)
T PLN02883 77 NFEQGYLS-RYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSP------------- 142 (384)
T ss_pred cccCCeEe-eCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCc-------------
Confidence 47788888 777778876655 5999999999994 533346888999999999999999754
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecC
Q 017872 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGY 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (365)
+.+.+.+.+++++..+ +.+++ ......+|||++++++.+. +|+.+ ...+.++|.++|+
T Consensus 143 ---------~~e~~~~~i~~lv~~n-~~wvp-----~~~~~~lYIRp~v~~~~~~------lG~~~-~~~~~~~i~~~p~ 200 (384)
T PLN02883 143 ---------SVHQFIEGVKQTVLAN-RRWVP-----PPGKGSLYLRPLLFGSGAS------LGVAA-APEYTFLVFGSPV 200 (384)
T ss_pred ---------CHHHHHHHHHHHHHhc-cccCC-----CCCCceEEEEEEEEecCCc------cCCCC-CCCeEEEEEEEec
Confidence 2445556666666422 11110 1123578999999988643 34432 2458899999998
Q ss_pred CCccccccCCCcEEEEecc-cccC----Cccccc-chhhcHHHHHHhCCCCCcEEE-EeCC-CCeEEecCcceEEEEEcC
Q 017872 161 VPFVFGVEGTGARLALVGR-GRDV----AEAKYS-DWVRLRKPLEKLRPPSVTELL-LSND-GDQLLEGSITNFFVVCRK 232 (365)
Q Consensus 161 ~~~~~~~~~~Gv~l~~~~~-~r~~----~~~K~~-~~~~~~~~l~~a~~~g~de~l-L~~~-gg~v~Egs~sN~F~v~~~ 232 (365)
+++.... -+++++.+... .|.. .++|+. ||........+|+++||||+| ||.+ +++|+|++++|||+|+++
T Consensus 201 ~~y~~~g-~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~ 279 (384)
T PLN02883 201 QNYFKEG-TAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGN 279 (384)
T ss_pred ccccccC-cceEEEEECccccccCCCCCcccchhhhHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECC
Confidence 7543110 13567767654 5643 468886 676655566678999999996 5644 459999999999999988
Q ss_pred CCCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEE
Q 017872 233 DNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVES 312 (365)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~ 312 (365)
+ |+|||++.+|||||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.+
T Consensus 280 ~-------------------l~TP~l~~~iLpGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~~ 340 (384)
T PLN02883 280 I-------------------IVTPATSGTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGS 340 (384)
T ss_pred E-------------------EEeCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeeccChhheEEEEE
Confidence 7 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhcc
Q 017872 313 IQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLG 359 (365)
Q Consensus 313 i~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~ 359 (365)
|++.. +. ....-..||+|++|+++|.++....
T Consensus 341 I~~~~-------~~--------~~~~~~~G~vt~~L~~~l~~iq~G~ 372 (384)
T PLN02883 341 ITFKN-------TR--------TEYKVGDGIVTQQLRSILLGIQTGS 372 (384)
T ss_pred EeccC-------ce--------eecccCCCHHHHHHHHHHHHHHcCC
Confidence 99610 00 0011124899999999999887653
No 27
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=1.2e-38 Score=295.55 Aligned_cols=226 Identities=29% Similarity=0.385 Sum_probs=158.5
Q ss_pred cCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCC-CcceE
Q 017872 46 LFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRD-GEELA 124 (365)
Q Consensus 46 ~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~-~~~~~ 124 (365)
|+|++|++||.+||+.+ +..| + +.+.+++.+.+.+ +.++ ..+++
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~---------------------~----~~~~l~~~i~~~~---------~~~~~~~~~~ 45 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLP---------------------F----SREELREIIQELL---------EANPDQGEGY 45 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHS---------------------S----HHHHHHHHHHHHH---------HHTTSSSSEE
T ss_pred CCHHHHHHHHHHHHHHH-ccCC---------------------c----CHHHHHHHHHHHH---------HHcCCCCCcE
Confidence 78999999999999999 5322 1 3444555554322 1333 56779
Q ss_pred EEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecCCCccccccCCCcEEEEeccccc--CCcccccchhhcHH-HHHHh
Q 017872 125 VTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRD--VAEAKYSDWVRLRK-PLEKL 201 (365)
Q Consensus 125 iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~Gv~l~~~~~~r~--~~~~K~~~~~~~~~-~l~~a 201 (365)
||+++++|.+..... .+....+.......+....+......++.+.....++. .+.+|+.+|..... .++.|
T Consensus 46 ir~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~~~~~~~~~~~~~a 120 (231)
T PF01063_consen 46 IRITVTRGGGPLGGS-----PPENSAPPPFSIAPPRRPPPPLVGSVGVRRASPPLPRPNPLPRHKTTNRLANVLAALRAA 120 (231)
T ss_dssp EEEEEEETSSSSSSS-----ECSEEEEEEEEEETCHHHHEEEEEECSEECETTTSE-TTTSTTS-BSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcCcc-----CccccccccccccccccCCcceeeeeeEEeccccccccCCCCCeeECCcchhhHHHHHHH
Confidence 999999986542111 11111111222221111111111112222222222232 56899988866655 55567
Q ss_pred CCCCCcEEE-EeCCCCeEEecCcceEEEEEcCCCCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCC
Q 017872 202 RPPSVTELL-LSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGI 280 (365)
Q Consensus 202 ~~~g~de~l-L~~~gg~v~Egs~sN~F~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi 280 (365)
++.|+||+| +|.+| +|+||+++|||++++++ ++|||++.|+|+||||+.||++++++|+
T Consensus 121 ~~~g~de~ll~d~~G-~v~E~~~sNif~~~~~~-------------------~~TP~~~~giL~Gitr~~ll~~~~~~g~ 180 (231)
T PF01063_consen 121 REKGADEALLLDEDG-NVTEGSTSNIFFVKDGT-------------------LYTPPLDSGILPGITRQLLLELAKELGI 180 (231)
T ss_dssp HHTTSSEEEEEETTS-BEEEESSSEEEEEETTE-------------------EEEESGSSSSB--HHHHHHHHHHHHTTS
T ss_pred HhcCcchhheecCCC-CcCCCCCcccccccCCE-------------------EEcCChhhhhccHHHHHHHHHHHHhCCC
Confidence 788999985 56677 99999999999999998 9999999999999999999999999999
Q ss_pred CEEEEecCHHHHhhhceeeeeecccceEEEEEEcCCcccccccccccccccccccccCCCccHHHHHHHHHH
Q 017872 281 PIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEI 352 (365)
Q Consensus 281 ~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~ 352 (365)
+|+|+.++++||..|||+|+|||++||+||.+|++ +.+. +||+|++|+++|
T Consensus 181 ~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i~~-------------------~~~~--~~p~~~~L~~~~ 231 (231)
T PF01063_consen 181 PVEERPITLDDLQQADEVFLTNSLRGIRPVKSIDG-------------------RSFG--PGPITRRLQEAY 231 (231)
T ss_dssp EEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEETT-------------------EEST--THHHHHHHHHHH
T ss_pred CcEEEEeCHHHhhhhhheEEecchhhEEEEEEECC-------------------EECC--CCHHHHHHHHhC
Confidence 99999999999999999999999999999999998 2333 899999999987
No 28
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-37 Score=285.81 Aligned_cols=199 Identities=25% Similarity=0.271 Sum_probs=157.6
Q ss_pred CeEEEEEEEE-cCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhh
Q 017872 30 RGAYTTTRTH-NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNE 108 (365)
Q Consensus 30 ~GvFEt~r~~-~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~~~~ 108 (365)
.++|||||++ +| ++++|++|++||.+||+.|+++.| .+.+.+.+.+++
T Consensus 4 ~~lfETi~~~~~G--~~~~l~~Hl~RL~~sa~~l~~~~~-----------------------~~~l~~~l~~~~------ 52 (209)
T PRK07546 4 FELIETLRWEPGA--GFPRLDRHLARLERSARALGFPCD-----------------------PAAVRAKLAEAV------ 52 (209)
T ss_pred ccEEEEEEEeCCC--CcccHHHHHHHHHHHHHHhCCCCC-----------------------HHHHHHHHHHHh------
Confidence 4899999999 98 899999999999999999998643 222333333333
Q ss_pred hhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecCCCccccccCCCcEEEEecccccC----C
Q 017872 109 ALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDV----A 184 (365)
Q Consensus 109 ~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~Gv~l~~~~~~r~~----~ 184 (365)
+. ....++||+++++++ ++++.+.|+++.+. ..++++.++..++.. .
T Consensus 53 -------~~-~~~~~~vrl~~~~~g------------------~~~i~~~p~~~~~~---~~~~~l~~~~~~~~~~~~~~ 103 (209)
T PRK07546 53 -------AG-AQGPLRLRLTLARDG------------------RLTVETAPLPPLPP---DTVWRVAIARTRLDSADPLL 103 (209)
T ss_pred -------hc-cCCCeEEEEEEcCCC------------------CEEEEEecCCCCCC---CCcEEEEEcCcccCCCCcch
Confidence 12 235689999998763 23566677764321 245677666655542 3
Q ss_pred cccccchhhcHHHHHHhCCCCCcEEEEe-CCCCeEEecCcceEEEEEcCCCCcchhhhhhccCCCCceEEE-ecCCCCCc
Q 017872 185 EAKYSDWVRLRKPLEKLRPPSVTELLLS-NDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQ-TAPISDGV 262 (365)
Q Consensus 185 ~~K~~~~~~~~~~l~~a~~~g~de~lL~-~~gg~v~Egs~sN~F~v~~~~~~~~~~~~~~~~~~~~~~~l~-TPpl~~gi 262 (365)
.+|+.||.......++|+++|+||+||. .+| +|+||+++|+|++++++ ++ |||++.|+
T Consensus 104 ~~Kt~nr~~~v~a~~~a~~~g~de~l~l~~~G-~v~E~s~~Ni~~~~~~~-------------------~~~TP~~~~g~ 163 (209)
T PRK07546 104 RYKTTRRAAYDAARAELPPAEADEVILLNERG-EVCEGTITNVFLDRGGG-------------------MLTTPPLSCGL 163 (209)
T ss_pred hcccCChHHHHHHHHHHhhCCCCEEEEECCCC-cEEEcCceeEEEEECCE-------------------EEECCCCcCCC
Confidence 5898888665555667788999999755 567 99999999999999998 99 99999999
Q ss_pred cccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEE
Q 017872 263 LPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESI 313 (365)
Q Consensus 263 LpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i 313 (365)
|+||||+.+++. ++++|+.++++||..|||+|+|||++||+||..|
T Consensus 164 L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~~ 209 (209)
T PRK07546 164 LPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLRGLIRAELI 209 (209)
T ss_pred CccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccceeEEEEEEC
Confidence 999999999984 6899999999999999999999999999999865
No 29
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=289.11 Aligned_cols=287 Identities=21% Similarity=0.252 Sum_probs=219.4
Q ss_pred EECCeeecCCCCCcccc---cccCCCeEEEEEEEEcC---cccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017872 8 FSNGVVSQASDTPSVST---FLQERRGAYTTTRTHNN---GSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (365)
Q Consensus 8 ~~nG~~~~~~~~~~is~---~~~~G~GvFEt~r~~~g---~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (365)
|.-|++. +-....+++ ..|+|+|+||.+++|++ .+++|+.+.|+.|+.+||.++.||.|
T Consensus 70 w~~~~I~-p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrPd~N~~Rm~~sA~r~~lP~p-------------- 134 (379)
T KOG0975|consen 70 WSQGEIS-PFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRPDQNMDRMLRSAERACLPSP-------------- 134 (379)
T ss_pred cCCCCcc-CcCCEeeChhhhceecchhhccccccccCCCCeEEEecchhhHHHHHhhhhhccCCCC--------------
Confidence 4455555 544444442 34569999999999975 57899999999999999999999866
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecCC
Q 017872 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (365)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (365)
+.....+.+++++... +++++ .......|||+++.+++.. +|..+ +.++.+++.++|.-
T Consensus 135 --------~~~e~ie~i~~lv~~~-~~wVP-----~~~~~SLyirp~l~Gt~~~------Lgv~~-~~e~~l~vi~spvg 193 (379)
T KOG0975|consen 135 --------DVEEFIEAIKQLVLAD-KEWVP-----PPGKGSLYIRPLLIGTDPV------LGVSP-APEATLFVIVSPVG 193 (379)
T ss_pred --------CHHHHHHHHHHHHHhc-CcccC-----CCCCceEEEeeeeccCCcc------ccccc-CCcceEEEEEcccc
Confidence 2233445566655422 22221 3345678999999887643 45443 36688999999987
Q ss_pred CccccccCCCcEEEEec-ccccCCc----cc-ccchhhcHHHHHHhCCCCCcEE-EEeCCCCeEEecCcceEEEEEcCCC
Q 017872 162 PFVFGVEGTGARLALVG-RGRDVAE----AK-YSDWVRLRKPLEKLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCRKDN 234 (365)
Q Consensus 162 ~~~~~~~~~Gv~l~~~~-~~r~~~~----~K-~~~~~~~~~~l~~a~~~g~de~-lL~~~gg~v~Egs~sN~F~v~~~~~ 234 (365)
++... -.+|+.|.+.+ ..|..|+ .| ..||.....+..+|+.+||.++ +|+-++++|+|.++.|+|+|+++.+
T Consensus 194 ~yf~~-g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d~~~ItEv~tmNiF~v~~n~~ 272 (379)
T KOG0975|consen 194 PYFKS-GFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGDGGYITEVGTMNIFMVKKNED 272 (379)
T ss_pred hhccc-cccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecCCCceeeccceeEEEEEcCce
Confidence 76421 13567886665 5676653 34 4688877777888999999998 5887777999999999999999873
Q ss_pred CcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCC-CCEEEEecCHHHHhhhceeeeeecccceEEEEEE
Q 017872 235 SEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKG-IPIRELASSWSQHELWKEAFITSSLRVLQHVESI 313 (365)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~g-i~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i 313 (365)
||+|||++.-|||||||+.|+|+|++.| ++|+||.++++|+.+|+|+|.|+|+..|.||.+|
T Consensus 273 -----------------elvTPp~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~i 335 (379)
T KOG0975|consen 273 -----------------ELVTPPLDGTILPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVFCTGTAAVVSPVGSI 335 (379)
T ss_pred -----------------eEecCCCCCcccCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhhcccceeeeccccce
Confidence 6999999989999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhcc
Q 017872 314 QVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLG 359 (365)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~ 359 (365)
.... ..++ ...+.+|..||++++|++.+.++....
T Consensus 336 ~~~~-------~~i~----~~~~~~g~~g~l~~~l~~~l~~iq~g~ 370 (379)
T KOG0975|consen 336 LYKD-------EKIH----IPTIGEGKEGPLAKKLLSTLTDIQYGR 370 (379)
T ss_pred eecc-------cccc----eeecCCCCccHHHHHHHHHHHHhhcCC
Confidence 8621 0000 012456778999999999999987654
No 30
>PRK07101 hypothetical protein; Provisional
Probab=99.97 E-value=4.3e-30 Score=234.06 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=134.6
Q ss_pred CeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCC-CCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhh
Q 017872 30 RGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSS-PNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNE 108 (365)
Q Consensus 30 ~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~~~~ 108 (365)
.++|||||+++| ++++|++|++||.+||+.|++.. | ++.+.+.+.+.+
T Consensus 3 ~~l~ETir~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~~~-------------------------~~~~~~~~~~~~---- 51 (187)
T PRK07101 3 FPLFETIAIEDG--EIQNLSYHQQRYERTLAEFYGKEAP-------------------------FDLAEIIQPPTE---- 51 (187)
T ss_pred CcceEEEeeeCC--eeccHHHHHHHHHHHHHHHcccCCc-------------------------ccHHHHhhchhh----
Confidence 379999999998 89999999999999999998853 2 133444444321
Q ss_pred hhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCCCCcceeEEEEeecCCCccccccCCCcEEEEecccccCCcccc
Q 017872 109 ALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKY 188 (365)
Q Consensus 109 ~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~Gv~l~~~~~~r~~~~~K~ 188 (365)
. . ++++|+.|+.+.+. +.+...|+++.. ..|+++..+...+. .+|+
T Consensus 52 --------~-~--~~~~r~rl~~~~g~-----------------~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~Kt 97 (187)
T PRK07101 52 --------L-Q--EGLVRCRIDYNAEI-----------------YQVQYFPYQRRP----IRSFQPVYCDDIDY--SLKY 97 (187)
T ss_pred --------h-c--CCCEEEEEEecCCc-----------------EEEEEEcCCCCC----cCceEEEecCCccc--cccc
Confidence 0 1 22344444544331 123445654432 23777765443322 5687
Q ss_pred cchhhcHHHHHHhCCCCCcEEEEeCCCCeEEecCcceEEEEEcCCCCcchhhhhhccCCCCceEEEecCCCCCccccHHH
Q 017872 189 SDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268 (365)
Q Consensus 189 ~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Egs~sN~F~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR 268 (365)
+++..+.+.++ ++.|+||+|+.++| +|+||+++|+|+++++. |+||| .|+||||||
T Consensus 98 ~~r~~~~~~~a--~~~g~de~l~~~~G-~v~E~~~sNi~~~~~~~-------------------~~TP~--~~~L~Gi~R 153 (187)
T PRK07101 98 TDRSALNELFA--QKGECDEIIIIKNG-LVTDTSIGNLAFFDGKQ-------------------WFTPK--KPLLKGTQR 153 (187)
T ss_pred CCHHHHHHHHH--HhCCCCEEEEEcCC-EEEEccceEEEEEECCE-------------------EEcCC--CCCccHHHH
Confidence 76544444444 45799999877777 99999999999999987 99998 489999999
Q ss_pred HHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccce
Q 017872 269 QLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVL 307 (365)
Q Consensus 269 ~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi 307 (365)
+.+++. | +|+|+.++++||..|||+|+|||++|.
T Consensus 154 ~~ll~~----~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 154 ARLLDE----G-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred HHHHcc----C-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 999973 5 899999999999999999999999884
No 31
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=39.66 E-value=33 Score=32.11 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.2
Q ss_pred HHHhCCCCEEEEecCHHHHhhh
Q 017872 274 VCRSKGIPIRELASSWSQHELW 295 (365)
Q Consensus 274 ~a~~~gi~v~E~~i~~~eL~~a 295 (365)
-|++.|++++.++++.++|..+
T Consensus 104 ~a~~~gv~~~~~~~~~~~l~~~ 125 (207)
T PF11814_consen 104 EAEQAGVPVHYRPLSLADLRAA 125 (207)
T ss_pred HHHHCCCceecCCCCHHHHHHH
Confidence 4566899999999999999876
No 32
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=25.94 E-value=34 Score=32.84 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=25.9
Q ss_pred ceEEEecCCCCCccccHH----HHHHHHHHHhCCCCEEEEecCHHHH
Q 017872 250 SFEVQTAPISDGVLPGVI----RQLVIEVCRSKGIPIRELASSWSQH 292 (365)
Q Consensus 250 ~~~l~TPpl~~giLpGIt----R~~vle~a~~~gi~v~E~~i~~~eL 292 (365)
|.+.+||| ..|.||+=| |.++|.+.++ ..+|..++.+|+
T Consensus 29 R~TYitPP-G~GFlP~~TA~HHr~~il~Lv~~---al~ea~v~~~di 71 (336)
T KOG2708|consen 29 RHTYITPP-GEGFLPRDTARHHRAWILGLVKQ---ALEEAGVTSDDI 71 (336)
T ss_pred cccccCCC-CCCCCcchhHHHHHHHHHHHHHH---HHHHcCCChhhC
Confidence 45688998 689999987 6677776554 234444554444
No 33
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=21.77 E-value=1.6e+02 Score=23.75 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=31.5
Q ss_pred CccccHHH-HHHHHHHHhCCCCEE---------EEecCHHHHhhhceeeeeeccc
Q 017872 261 GVLPGVIR-QLVIEVCRSKGIPIR---------ELASSWSQHELWKEAFITSSLR 305 (365)
Q Consensus 261 giLpGItR-~~vle~a~~~gi~v~---------E~~i~~~eL~~adEvFltnS~~ 305 (365)
|+-...+- +.+-+.|++.|+.+. +..++.+++..||-+++++...
T Consensus 10 G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 10 GIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred chhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCC
Confidence 33333333 334457889999877 5567778999999999988764
Done!