RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017872
(365 letters)
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 73.9 bits (182), Expect = 6e-15
Identities = 44/345 (12%), Positives = 86/345 (24%), Gaps = 103/345 (29%)
Query: 4 TRIVFSNGVVSQASD--TPSVSTFLQERRGA------YTTTRTHNNGSCLLFWERHLRRL 55
IV G + + P V + T + RH R
Sbjct: 16 ILIVEPYGGSIRQQNPNLPMVFWD---DAALTRGDGIFETLLIRDG--HACNVRRHGERF 70
Query: 56 ASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALK 115
+SA +L + P WE + +
Sbjct: 71 KASAALLG------------------LPEPILED----WEKATQMGIES---------WY 99
Query: 116 ERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLA 175
+ E + T +S G + G +++ G +
Sbjct: 100 SHPNAGEASCTWTLSR------GRSSTGLA----SGWLTITPVSSDKLAQREHGVSVMTS 149
Query: 176 LVGRGRDVAEAKYSDWVRL------RKPLEKLRP--------PSV-----------TELL 210
G D R R P L ++ +++
Sbjct: 150 SRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVI 209
Query: 211 LSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQL 270
++ ++LEG+ + K + +++T +LPG +
Sbjct: 210 FTDGD-RVLEGATSTVVSF--KGD-----------------KIRTPSPGGDILPGTTQAA 249
Query: 271 VIEVCRSKGIPIRELASSWSQHELWK--EAFITSSLRVLQHVESI 313
+ KG +E S +L+ ++ SS+R V +
Sbjct: 250 LFAHATEKGWRCKE--KDLSIDDLFGADSVWLVSSVRGPVRVTRL 292
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 69.5 bits (171), Expect = 1e-13
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 24/107 (22%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
L+L ++G + E N F K N V T + + G++R
Sbjct: 163 LVLDSEG-WVTECCAANLFWR--KGN-----------------VVYTPRLDQAGVNGIMR 202
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSSLRVLQHVESI 313
Q I + + E S E + E I ++L + V +
Sbjct: 203 QFCIRLLAQSSYQLVE--VQASLEESLQADEMVICNALMPVMPVCAC 247
Score = 39.8 bits (94), Expect = 7e-04
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
G +TT R + + H++RL + + L
Sbjct: 24 GCFTTARVIDG--KVSLLSAHIQRLQDACQRL 53
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 69.5 bits (171), Expect = 1e-13
Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 44/150 (29%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
L + + + E + N F++ ++N + T + DG+LPG+ R
Sbjct: 164 LFFNTEN-HVTETTCANLFLI--ENN-----------------ILYTPRVEDGILPGITR 203
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSSLRVLQHVESIQVPKTWELQESDC 326
+I C+ + ++E S ++ + F+T+SL+ ++ V S+ D
Sbjct: 204 ARLISHCQQHKMSVQE--ISLTKKRIEDADAVFLTNSLQGIRRVLSL-----------D- 249
Query: 327 WNDIAWEQKLFEGGPGMITKTIQEEIMERA 356
P I + + +
Sbjct: 250 ------NIIFEVNHP--IIDKLIFLLNQDE 271
Score = 32.1 bits (74), Expect = 0.22
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
G + T R +++ F H RL +SAR L
Sbjct: 28 GLFETIRVNSS--KPSFAYMHWERLGNSARQL 57
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 67.6 bits (166), Expect = 5e-13
Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 45/148 (30%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
L+L +++EG +N +V D + + + GV+R
Sbjct: 184 LMLDVHE-RVVEGVFSNLLLV--LDG-----------------TLVAPDLRRCGVAGVMR 223
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSSLRVLQHVESIQVPKTWELQESDC 326
++E G+P+ S EL E F+ +S + V ++
Sbjct: 224 AELLERAEGIGVPLAI--RDVSMAELATADEVFLCNSQFGIWPVRAL------------- 268
Query: 327 WNDIAWEQKLFEGGPGMITKTIQEEIME 354
++ W G +T+ +Q+++ +
Sbjct: 269 -DEHVW-------PVGELTRKLQDQLRD 288
Score = 37.2 bits (87), Expect = 0.005
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
G + T ERHL RL R L
Sbjct: 46 GLFETLAVRAG--TPRLLERHLARLEEGCRRL 75
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 62.1 bits (152), Expect = 3e-11
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 24/98 (24%)
Query: 208 ELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVI 267
E +L + + EGS +N F + KD + T P ++ +L G+
Sbjct: 166 EAILHRNN-TVTEGSSSNVFGI--KDG-----------------ILYTHPANNMILKGIT 205
Query: 268 RQLVIEVCRSKGIPIRELASSWSQHELW--KEAFITSS 303
R +VI +P++E ++ HE E F+TS+
Sbjct: 206 RDVVIACANEINMPVKE--IPFTTHEALKMDELFVTST 241
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 58.5 bits (142), Expect = 3e-10
Identities = 50/306 (16%), Positives = 87/306 (28%), Gaps = 99/306 (32%)
Query: 20 PSVSTF---LQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTP 76
P+ S T R G+ L ++RHL R LY S+ L F
Sbjct: 3 PAQSPLRDGDTADFELIETMRWQP-GTSFLRFDRHLAR-------LYGSAAELGFACD-- 52
Query: 77 SGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKL 136
++ ++ + + ++ +
Sbjct: 53 --------------PQRIAEVLSDALDGARTAM--------------RTRLALARNG--- 81
Query: 137 SGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEA----K---YS 189
D + Y P L L D K
Sbjct: 82 ---------------DATASAQPYEPLA---ADKVWILRLARTRLDSQNTLLRHKTSRRQ 123
Query: 190 DWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSH 249
+ R + E+LL+N+ ++ EG+ITN F D
Sbjct: 124 LYTHARS---EYLVTQADEVLLANERGEICEGTITNVFAD-FGDG--------------- 164
Query: 250 SFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSSLRVL 307
+ T + G+LPGV+R +++ R E + +S +L F+ +SLR L
Sbjct: 165 --VLATPRLDCGLLPGVLRAELLDEGR-----AEE--AIYSYDDLKSAKALFVGNSLRGL 215
Query: 308 QHVESI 313
+ +
Sbjct: 216 IPAKLV 221
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 58.3 bits (142), Expect = 7e-10
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 42/145 (28%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
+LL +G Q+ EGS +N F+V K+ ++ T + G+L G+ R
Sbjct: 166 ILLGLNG-QVCEGSFSNVFLV--KEG-----------------KLITPSLDSGILDGITR 205
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSSLRVLQHVESIQVPKTWELQESDC 326
+ VI++ +S IP+ E EL++ E F+T + + V + +
Sbjct: 206 ENVIKLAKSLEIPVEE--RVVWVWELFEADEMFLTHTSAGVVPVRRL-----------N- 251
Query: 327 WNDIAWEQKLFEGGPGMITKTIQEE 351
E FE PG +T T+ E
Sbjct: 252 ------EHSFFEEEPGPVTATLMEN 270
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 54.7 bits (132), Expect = 4e-09
Identities = 36/276 (13%), Positives = 64/276 (23%), Gaps = 96/276 (34%)
Query: 34 TTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSM 93
T H +R S Y F
Sbjct: 9 ETILIEQGQ--AKNISYHQQRYEKSLLKFYPKMKLQPFD--------------------- 45
Query: 94 WESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDV 153
+I AL R+G + + + D
Sbjct: 46 LAKIIAKH----------TALFTHREGL-IRCRIDYNHH-------------------DY 75
Query: 154 SVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKL--RPPSVTELLL 211
+ Y V+ V K+SD R L L + E+++
Sbjct: 76 VLQCFPYQQKVY------RTFKPVFCDHIDYSLKFSD----RTLLNNLLKQKEECDEIMI 125
Query: 212 SNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLV 271
G ++ + SI N + T P +L G R +
Sbjct: 126 IRQG-KVTDCSIGNLIFRQ--------NNQWIT------------P-DKPLLEGTQRAKL 163
Query: 272 IEV--CRSKGIPIRELASSWSQHELWKEAFITSSLR 305
+E ++ I +LA +E + +++
Sbjct: 164 LEQKKIIAREIFFEDLAQY-------EEIRLINAMN 192
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 53.7 bits (130), Expect = 2e-08
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 26/115 (22%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
LLL G +++GS T+ + ++ + +G L G+ R
Sbjct: 149 LLLDAFG-HVVDGSRTSPLLF--REG-----------------TLYLL---EGGLEGITR 185
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQE 323
+ V E R G+ + L + S L V P+ L E
Sbjct: 186 EKVAEAARGLGLRVERGLFRP--EGLRGHLLLAGSGVGLLPVRPPP-PELLPLIE 237
Score = 32.9 bits (76), Expect = 0.13
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
+TT R G L+ E HL RL A L
Sbjct: 23 SVFTTLRAE--GGRPLWLEEHLARLRRHALAL 52
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 52.2 bits (126), Expect = 8e-08
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 24/95 (25%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
+ L +G + EG+ N F V KD + T P + LPG+ R
Sbjct: 184 IALDVNG-YISEGAGENLFEV--KDG-----------------VLFTPPFTSSALPGITR 223
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFIT 301
+I++ + GI +RE S+ L+ E F++
Sbjct: 224 DAIIKLAKELGIEVRE--QVLSRESLYLADEVFMS 256
Score = 27.6 bits (62), Expect = 7.5
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 32 AYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
Y + + G + H++RL SA+I
Sbjct: 42 CYDS----HKGPVVFRHREHMQRLHDSAKIY 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 7e-07
Identities = 40/253 (15%), Positives = 77/253 (30%), Gaps = 101/253 (39%)
Query: 5 RIVFSNGVVSQASDTPSVS---TFLQERRGAYTTTRTHNNG--SCLL--------FWERH 51
++F GV + P+ S + L++ + +N G S +L + +
Sbjct: 301 TVLFFIGVRCYEA-YPNTSLPPSILED-------SLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 52 LRR----LASSARI---LYNSSPNL---------------LFKSPTPSGLEPIRTPSSS- 88
+ + L + ++ L N + NL L K+ PSGL+ R P S
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 89 ----------------SSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGD 132
S L + + D + + + +++ + V
Sbjct: 413 KLKFSNRFLPVASPFHSHL-L-VPASDLINKDLVKNNVSF------NAKDIQIPV----- 459
Query: 133 YGKLSGIENM--GSDDFLG-----VFDVSVHFSGYVPF------VFG------------- 166
Y G ++ S + + V + F FG
Sbjct: 460 YDTFDG-SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 167 -VEGTGARLALVG 178
+GTG R+ + G
Sbjct: 519 NKDGTGVRVIVAG 531
Score = 43.5 bits (102), Expect = 1e-04
Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 49/183 (26%)
Query: 194 LRKPLEKL----RPPSVTELL---LSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCN 246
L +P E P + EL+ L + + F V +E E+ +L+ N
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-N 99
Query: 247 NSHSFEVQTAPISDGVLPGVIRQLVI----EVCRSKGIPIR------------------- 283
+ H+ + +D L + +I P
Sbjct: 100 DIHALAAKLLQENDTTLVK--TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 284 --------------ELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWND 329
EL + + + I S L E I+ E + N
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS--ELIRTTLDAEKVFTQGLNI 215
Query: 330 IAW 332
+ W
Sbjct: 216 LEW 218
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 48.4 bits (116), Expect = 1e-06
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 25/95 (26%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
LLL DG + EGS NFF+V ++ T P L G+ R
Sbjct: 206 LLLDVDG-YVSEGSGENFFLV--NRG-----------------KLYT-PDLASCLDGITR 244
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFIT 301
VI + + GI + E ++ E++ EAF T
Sbjct: 245 DTVITLAKEAGIEVIE--KRITRDEVYTADEAFFT 277
Score = 27.2 bits (61), Expect = 8.9
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 32 AYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
AY +T + G+ + + H +RL +SA+I
Sbjct: 64 AY---KTADGGTAIFRLKEHTKRLLNSAKIF 91
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 47.6 bits (114), Expect = 2e-06
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 25/95 (26%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
LLL +G + EGS N F V +D + L G+ R
Sbjct: 183 LLLDEEG-YVAEGSGENLFFV--RDG-----------------VIYA-LEHSVNLEGITR 221
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFIT 301
VI + + G ++ ++ +L+ E F+T
Sbjct: 222 DSVIRIAKDLGYEVQV--VRATRDQLYMADEVFMT 254
Score = 27.2 bits (61), Expect = 9.1
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 32 AYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
AY T G + + H++R +SA++L
Sbjct: 41 AYET----AKGPAIFRLKEHVKRFYNSAKVL 67
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 43.0 bits (102), Expect = 8e-05
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 23/83 (27%)
Query: 225 NFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKG----- 279
N F+ ++ E E + T P+ +LPGV R+ ++++ G
Sbjct: 262 NLFLYWINEDGEEE--------------LATPPLDGIILPGVTRRCILDLAHQWGEFKVS 307
Query: 280 ---IPIRELASSWSQHELWKEAF 299
+ + +L ++ + + +E F
Sbjct: 308 ERYLTMDDLTTALEGNRV-REMF 329
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 43.0 bits (102), Expect = 9e-05
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 33/102 (32%)
Query: 216 DQLL-----EGSIT-----NFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPG 265
+Q+L + +T N FV ++ E + T P++ +LPG
Sbjct: 223 EQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLE--------------LVTPPLNGVILPG 268
Query: 266 VIRQLVIEVCRSKG--------IPIRELASSWSQHELWKEAF 299
V+RQ ++++ ++ G I +++L + + + +E F
Sbjct: 269 VVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRV-REVF 309
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 42.6 bits (101), Expect = 1e-04
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 22/115 (19%)
Query: 246 NNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKG-------IPIRELASSWSQHELWKEA 298
+ S + T +S +LPG+ R ++++ G I + E E+ E
Sbjct: 255 GSGGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEI-TEV 313
Query: 299 FITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIM 353
F + V+ V ++ +D + + +G PG IT +++ +
Sbjct: 314 FACGTAAVITPVSHVK------------HHDGEFT--IADGQPGEITMALRDTLT 354
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.002
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 49 ERH-LRRLASSARILY--NSSPNLLFKS 73
E+ L++L +S + LY +S+P L K+
Sbjct: 18 EKQALKKLQASLK-LYADDSAPALAIKA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.047
Identities = 30/167 (17%), Positives = 53/167 (31%), Gaps = 48/167 (28%)
Query: 177 VGRGRDVAEAKYSDWVRLRKPLEKLRP-PSVT--------------ELLLSNDGDQLLEG 221
V R + + LR+ L +LRP +V ++ LS ++
Sbjct: 131 VSRLQPYLK--------LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 222 SITNFFVVCRKDNSEAEDKFLQTCNN-SHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGI 280
I F++ + NS + L+ + + SD S I
Sbjct: 183 KI--FWLNLKNCNSP--ETVLEMLQKLLYQIDPNWTSRSD---------------HSSNI 223
Query: 281 PIR-ELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDC 326
+R + + L K + L VL +V++ K W C
Sbjct: 224 KLRIHSIQAELRR-LLKSKPYENCLLVLLNVQN---AKAWNAFNLSC 266
Score = 34.4 bits (78), Expect = 0.062
Identities = 48/357 (13%), Positives = 97/357 (27%), Gaps = 121/357 (33%)
Query: 32 AYTTTRTHNNGSCLLFW------ERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTP 85
+Y + +FW L ++LY PN + I+
Sbjct: 173 SYKVQCKMDFK---IFWLNLKNCNSPETVLEMLQKLLYQIDPNW---TSRSDHSSNIKLR 226
Query: 86 SSSSSLSMWESMIKSLVNDSM-NEALPIALKERRDGEELAV------TVLVSGDYGKLSG 138
S ++ ++ L+ L + L ++ + +L +
Sbjct: 227 IHS-----IQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKILLTTRF----KQ 276
Query: 139 IENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPL 198
+ DFL + + + +L+ KY L
Sbjct: 277 VT-----DFLSAATTTHISLDHHSMTLTPDEV---KSLL--------LKY-----LDCRP 315
Query: 199 EKLRPPSVTE---LLLSNDGDQLLEGSIT-NFFVVCRKDNSEAEDKFLQTCNNSHSFEVQ 254
+ L P V LS + + +G T + + + N + +++ S V
Sbjct: 316 QDL-PREVLTTNPRRLSIIAESIRDGLATWDNW---KHVNCDKLTTIIES-----SLNVL 366
Query: 255 TAPISDGVLPGVIRQ----LVI---EVCRSKGIPIRELASSWSQ----------HELWKE 297
P R+ L + IP L+ W ++L K
Sbjct: 367 E--------PAEYRKMFDRLSVFPPSA----HIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 298 AFI-------TSSLRVLQ-------------H---VESIQVPKTWELQESDCWNDIA 331
+ + T S+ + H V+ +PKT+ +D+
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF------DSDDLI 465
Score = 29.8 bits (66), Expect = 1.9
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 17/104 (16%)
Query: 182 DVAEAKYSDWV--RLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAED 239
+V Y ++ ++ + R PS+ + D+L + V K N
Sbjct: 85 EVLRINY-KFLMSPIK---TEQRQPSMMTRMYIEQRDRLYNDN-----QVFAKYNVSRLQ 135
Query: 240 KFLQTCNNSHSFEVQTAP--ISDGVLPGVIRQ-LVIEVCRSKGI 280
+L+ E++ A + DG + G + + ++VC S +
Sbjct: 136 PYLKL--RQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYKV 176
>2y0f_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase,
isoprenoid biosynthesis, non-mevalonate PATH; 2.50A
{Thermus thermophilus}
Length = 406
Score = 28.0 bits (63), Expect = 6.1
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 21/64 (32%)
Query: 271 VIEVCRSKGIPIR---------------------ELASSWSQHELWKEAFITSSLRVLQH 309
+I + G P+R S HE+ EA + S++R +
Sbjct: 129 MIRIAMDLGKPVRIGANWGSLDPALLTELMDRNASRPEPKSAHEVVLEALVESAVRAYEA 188
Query: 310 VESI 313
+
Sbjct: 189 ALEM 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,631,697
Number of extensions: 337520
Number of successful extensions: 683
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 35
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)