RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017872
(365 letters)
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 46.9 bits (110), Expect = 2e-06
Identities = 45/326 (13%), Positives = 87/326 (26%), Gaps = 71/326 (21%)
Query: 31 GAYTTTRTHNN--GSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSS 88
+ R +++ G + H++RL SA+I +
Sbjct: 31 SVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSID----------------- 73
Query: 89 SSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFL 148
+ ++ + + I + V + G+
Sbjct: 74 ----ELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGA 129
Query: 149 GVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTE 208
+ + G Y + + +
Sbjct: 130 EALEQGIDAMVSSWNRAAPNTIPTAAKAGGN--------YLSSLLVGSEARRHGYQEGIA 181
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
L + + EG+ N F V KD + T P + LPG+ R
Sbjct: 182 L---DVNGYISEGAGENLFEV--KDG-----------------VLFTPPFTSSALPGITR 219
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWN 328
+I++ + GI +RE S L E F++ + + V S+
Sbjct: 220 DAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVD-------------- 265
Query: 329 DIAWEQKLFEGGPGMITKTIQEEIME 354
++ EG G +TK IQ+
Sbjct: 266 ----GIQVGEGRCGPVTKRIQQAFFG 287
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 43.4 bits (101), Expect = 2e-05
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 22/106 (20%)
Query: 252 EVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSSLRVLQH 309
+ T P ++ +L G+ R +VI +P++E+ ++ HE K E F+TS+ +
Sbjct: 190 ILYTHPANNMILKGITRDVVIACANEINMPVKEI--PFTTHEALKMDELFVTSTTSEITP 247
Query: 310 VESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMER 355
V I + + +G G T+ +Q++ +
Sbjct: 248 VIEID------------------GKLIRDGKVGEWTRKLQKQFETK 275
Score = 32.3 bits (72), Expect = 0.077
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARILYN 64
G Y + +N + H+ RL +SA +
Sbjct: 29 GVYEVVKVYNG--EMFTVNEHIDRLYASAEKIRI 60
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 35.0 bits (79), Expect = 0.008
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARILYN 64
G +TT R + + H++RL + + L
Sbjct: 24 GCFTTARVIDGK--VSLLSAHIQRLQDACQRLMI 55
Score = 32.7 bits (73), Expect = 0.059
Identities = 12/65 (18%), Positives = 25/65 (38%)
Query: 249 HSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQ 308
V T + + G++RQ I + + E+ +S + E I ++L +
Sbjct: 183 KGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVM 242
Query: 309 HVESI 313
V +
Sbjct: 243 PVCAC 247
>d1r6oc1 d.45.1.2 (C:20-106) Adaptor protein ClpS (YljA)
{Escherichia coli [TaxId: 562]}
Length = 87
Score = 27.0 bits (60), Expect = 1.3
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 199 EKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQT 244
+ L+PPS+ +++L ND +E I D A L
Sbjct: 1 DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAV 46
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator
Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Length = 132
Score = 26.9 bits (59), Expect = 2.0
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 48 WERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLV 102
W+ A S R ++ P + L T SLS++ S L
Sbjct: 3 WDEAFSEWARSYRAAFSRHPTAI-------RLLATETVRDPGSLSVYHSAAAGLR 50
>d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal
domain {Escherichia coli, PepA [TaxId: 562]}
Length = 325
Score = 26.6 bits (58), Expect = 4.6
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 329 DIA---WEQKLFEGGPGMITKTIQEEIMERAGLGG 360
DIA W +G G + + ++ RAG G
Sbjct: 289 DIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNG 323
>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
1085]}
Length = 320
Score = 26.3 bits (58), Expect = 5.5
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 19/55 (34%)
Query: 260 DGVLPGV--IRQLVIEVCRSKGIPIRELA----------SSWSQ-----HELWKE 297
DG + G +RQ + G+P+ + A S+ + W++
Sbjct: 264 DGPVAGARSLRQ-AWQ-AWRDGVPVLDYAREHKELARAFESFPGDADQIYPGWRK 316
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr
virus [TaxId: 10376]}
Length = 230
Score = 25.8 bits (56), Expect = 8.9
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 39 HNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSS 89
+ W A L NS +L+ S PS L T S+
Sbjct: 156 RLKACVFMLWGAK----AGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQ 202
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator
SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Length = 144
Score = 25.0 bits (54), Expect = 9.1
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 48 WERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSL 101
W LR + +S ++ + P L + PS + L + E +++ L
Sbjct: 3 WREQLRAVLTSYTLVLFAHPQLA-------RSALVARPSGENYLRLVERVLELL 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,361,768
Number of extensions: 62824
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 12
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)