BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017873
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WOO|A Chain A, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|B Chain B, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|C Chain C, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|D Chain D, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|E Chain E, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|F Chain F, Nucleotide-Free Form Of S. Pombe Get3
Length = 329
Score = 337 bits (864), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 169/322 (52%), Positives = 221/322 (68%), Gaps = 11/322 (3%)
Query: 17 GSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76
G++ N+LEQ SLKW+F S L+I +++VR SVL+ISTDPAHNLSDAF
Sbjct: 8 GTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGT 67
Query: 77 RFTKTPTLVNGFSNLYAMEVDP--SVEEET------GSTEGMDSLFSELANAIPGIDEAM 128
+F K V GF NL AME+DP S++E T + + +LA IPGIDEA+
Sbjct: 68 KFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGIDEAL 127
Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
+FAE+LK +++M++ C++FDTAPTGHTLR L FP+ LEK L K+ L ++FG MINQM
Sbjct: 128 AFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGS 187
Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
+ G++ E L G++E M+ I VNKQFK+PDLTTFVCVCI EFLSLYETER++QEL
Sbjct: 188 IMGVNA--NEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQEL 245
Query: 249 TKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV 308
T +EIDTHNI++NQ+L D + + AR +MQQKYL Q LY+DFH+ K+P +P EV
Sbjct: 246 TSYEIDTHNIVVNQLLLDPNTTCPQCM-ARRKMQQKYLAQIEELYEDFHVVKVPQVPAEV 304
Query: 309 TGIEALKAFSQHFVTPYQPSTS 330
G EALK+FS+ V PY TS
Sbjct: 305 RGTEALKSFSEMLVKPYVYPTS 326
>pdb|3IBG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|E Chain E, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|F Chain F, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
Length = 348
Score = 320 bits (819), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 163/325 (50%), Positives = 222/325 (68%), Gaps = 13/325 (4%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
E ++++IL Q +L+W+F S L+I LA+VR SVL+ISTDPAHNLSDAF
Sbjct: 14 EPTLQSILSQKTLRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFG 73
Query: 76 QRFTKTPTLVNGFSNLYAMEVDP--SVEEETGSTE----------GMDSLFSELANAIPG 123
Q+F K LV+G+SNL AME+DP S+++ S + GM ++ +LA +IPG
Sbjct: 74 QKFGKEARLVDGYSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMGNMMQDLAFSIPG 133
Query: 124 IDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183
+DEAMSFAE+LK V+++ Y IVFDTAPTGHTLR LQFP+ LEK L K+ L ++FG M+
Sbjct: 134 VDEAMSFAEVLKQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPML 193
Query: 184 NQ-MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242
N + G+ D LL ++E +++ I VN QFK+PD+TTFVCVCI EFLSLYETE
Sbjct: 194 NSILGARGGLPGGQNIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETE 253
Query: 243 RLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLP 302
R++QELT + IDTH I++NQ+L+ E + AR +MQ+KYL+Q LY+DF++ ++P
Sbjct: 254 RMIQELTSYGIDTHAIVVNQLLFPKEGSGCEQCNARRKMQKKYLEQIEELYEDFNVVRMP 313
Query: 303 LLPEEVTGIEALKAFSQHFVTPYQP 327
LL EEV G E L+ FS+ V PY P
Sbjct: 314 LLVEEVRGKEKLEKFSEMLVHPYVP 338
>pdb|3IQW|A Chain A, Amppnp Complex Of C. Therm. Get3
pdb|3IQW|B Chain B, Amppnp Complex Of C. Therm. Get3
pdb|3IQX|A Chain A, Adp Complex Of C.Therm. Get3 In Closed Form
pdb|3IQX|B Chain B, Adp Complex Of C.Therm. Get3 In Closed Form
Length = 334
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 160/323 (49%), Positives = 215/323 (66%), Gaps = 11/323 (3%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
E ++++IL+Q SL+W+F S L+I LA+VR SVL++STDPAHNLSDAF
Sbjct: 4 EPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFS 63
Query: 76 QRFTKTPTLVNGFSNLYAMEVDPS------VEEETGSTE---GMDSLFSELANAIPGIDE 126
Q+F K LV GF NLYAME+DP+ + +TG + G + +LA AIPGIDE
Sbjct: 64 QKFGKEARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDE 123
Query: 127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
AMSFAE+LK V ++ Y IVFDTAPTGHTLR LQFP+ LEK L K+ L ++G ++N +
Sbjct: 124 AMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNGI 183
Query: 187 TRLFG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV 245
G + + ++ +L+ ++ I VN QFKD LTTFVCVCIPEFLSLYETER++
Sbjct: 184 LGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMI 243
Query: 246 QELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYD-DFHITKLPLL 304
QEL + IDTH I++NQ+L+ + + AR RMQ+KYLDQ LYD +F++ K+PLL
Sbjct: 244 QELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLL 303
Query: 305 PEEVTGIEALKAFSQHFVTPYQP 327
EEV G E L+ FS+ + P+ P
Sbjct: 304 VEEVRGKERLEKFSEMLIKPFVP 326
>pdb|3IO3|A Chain A, Get3 With Adp From D. Hansenii In Closed Form
Length = 348
Score = 271 bits (694), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 209/350 (59%), Gaps = 32/350 (9%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +I++ DSLKW+F SS +++ LA +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDP----------SVEEETGSTEGMDSLFSELANAIPG 123
F Q+F K V G NL ME+DP + + + + S+ S++ +IPG
Sbjct: 66 FCQKFGKDARKVEGLPNLSCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPG 125
Query: 124 IDEAMSFAEMLKLVQT------------MDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDK 171
IDEA+SF E+LK ++ + Y I+FDTAPTGHTLR LQ PSTLEK L K
Sbjct: 126 IDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSK 185
Query: 172 MMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVC 231
L K G M++ M D + +L ++ + VN+QF +P+LTTF+CVC
Sbjct: 186 FKDLSGKLGPMLSMMGGGQQQD-------IFEKLNEVQKNVSEVNEQFTNPELTTFICVC 238
Query: 232 IPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVES-KLLRARMRMQQKYLDQFY 290
I EFLSLYETER++QEL + +D ++I++NQ+L+ + D S K +R +MQ+KYLDQ
Sbjct: 239 ISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMG 298
Query: 291 MLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
LY+D+H+ K+PLL E+ G+E LK FS+ + PY P D V DLE +
Sbjct: 299 ELYEDYHLVKMPLLGCEIRGVENLKKFSKFLLKPYDPKADSDIVFDLEEK 348
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 37/355 (10%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +++ + KW+F S ++I +A +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
F ++F K V G +NL ME+DPS GS D L
Sbjct: 66 FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
++L +IPGIDEA+SF E++K ++ + + ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
L+K + NK G M+N +D + G+L +K +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVE--SKLLRARMRMQQKY 285
VCVCI EFLSLYETERL+QEL +++D ++II+NQ+L+ + D E K +AR +MQ+KY
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY 298
Query: 286 LDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
LDQ LY+DFH+ K+PL E+ G+ L FSQ Y P T + +LE +
Sbjct: 299 LDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 37/355 (10%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +++ + KW+F S ++I +A +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
F ++F K V G +NL ME+DPS GS D L
Sbjct: 66 FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
++L +IPGIDEA+SF E++K ++ + + ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
L+K + NK G M+N +D + G+L +K +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVE--SKLLRARMRMQQKY 285
VCVCI EFLSLYETERL+QEL +++D ++II+NQ+L+ + D E K +AR +MQ+KY
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY 298
Query: 286 LDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
LDQ LY+DFH+ K+PL E+ G+ L FSQ Y P T + +LE +
Sbjct: 299 LDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 37/355 (10%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +++ + KW+F S ++I +A +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
F ++F K V G +NL ME+DPS GS D L
Sbjct: 66 FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
++L +IPGIDEA+SF E++K ++ + + ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
L+K + NK G M+N +D + G+L +K +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVE--SKLLRARMRMQQKY 285
VCVCI EFLSLYETERL+QEL +++D ++II+NQ+L+ + D E K +AR +MQ+KY
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY 298
Query: 286 LDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
LDQ LY+DFH+ K+PL E+ G+ L FSQ Y P T + +LE +
Sbjct: 299 LDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
Length = 354
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 37/355 (10%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +++ + KW+F S ++I +A +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
F ++F K V G +NL ME+DPS GS D L
Sbjct: 66 FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
++L +IPGIDEA+SF E++K ++ + + ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
L+K + NK G M+N +D + G+L +K +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVE--SKLLRARMRMQQKY 285
VCVCI EFLSLYETERL+QEL +++D ++II+NQ+L+ + D E K +AR +MQ+KY
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY 298
Query: 286 LDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
LDQ LY+DFH+ K+PL E+ G+ L FSQ Y P T + +LE +
Sbjct: 299 LDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 37/355 (10%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +++ + KW+F S ++I +A +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
F ++F K V G +NL ME+DPS GS D L
Sbjct: 66 FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
++L +IPGIDEA+SF E++K ++ + + ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
L+K + NK G M+N +D + G+L +K +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVE--SKLLRARMRMQQKY 285
VCVCI EFLSLYETERL+QEL +++D ++II+NQ+L+ + D E K +AR +MQ+KY
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY 298
Query: 286 LDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
LDQ LY+DFH+ K+PL E+ G+ L FSQ Y P T + +LE +
Sbjct: 299 LDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353
>pdb|3ZQ6|A Chain A, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|B Chain B, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|C Chain C, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|D Chain D, Adp-Alf4 Complex Of M. Therm. Trc40
Length = 324
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 165/297 (55%), Gaps = 18/297 (6%)
Query: 45 SSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSV---- 100
S+ ++ +A L+ISTDPAH+LSD+ ++ TPT + NLYA+E+DP V
Sbjct: 31 SAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKIT--ENLYAVEIDPEVAMEE 88
Query: 101 -----EEETGSTEGM--DSLFSEL--ANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAP 151
+E+ GM D L ++ A+ PGIDEA +F + L+ + T +Y ++FDTAP
Sbjct: 89 YQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAP 148
Query: 152 TGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG-IDDEFGEDALLGRLEGMKD 210
TGHTLRLL FP ++ + KM+ ++ + G M + + DE ED L +E K
Sbjct: 149 TGHTLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKK 208
Query: 211 VIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDV 270
I + DP+ T+F V IPE +S+YE+ER ++ L K+ I +I+NQVL ++ D
Sbjct: 209 QINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDC 268
Query: 271 ESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQP 327
E AR ++QQ+ L Q + D + ++PLL +E GIE L+ ++ +P
Sbjct: 269 E--FCNARRKLQQERLKQIREKFSDKVVAEVPLLKKEAKGIETLEKIAEQLYGEPEP 323
>pdb|3UG6|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
Length = 349
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 168/323 (52%), Gaps = 24/323 (7%)
Query: 18 SVRNILEQ-----DSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSD 72
S+R I E+ D K++ S+ + LAE V+I+STDPAH+L D
Sbjct: 11 SLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRD 70
Query: 73 AFQQRFTKTPTLVNGFSNLYAMEVDPS-------------VEEETGSTEGMDSLFSELAN 119
F+Q F PT V G+ NLY +E+DP +EE E ++ E+A
Sbjct: 71 IFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQL-EMAA 129
Query: 120 AIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKF 179
PG DE+ +F LK + + ++ ++FDTAPTGHTLR L P ++K + K++ L+ +
Sbjct: 130 LSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQM 189
Query: 180 GGMINQMTRLF---GIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFL 236
G + M +L G D++ D +L LE MK+ I R DP+ T F V IPE +
Sbjct: 190 SGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEM 249
Query: 237 SLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDF 296
S+ E+ER ++ L K+ I +I+NQ++ EDV+ RAR +Q K L+ + D
Sbjct: 250 SILESERAMKALQKYGIPIDAVIVNQLI--PEDVQCDFCRARRELQLKRLEMIKEKFGDK 307
Query: 297 HITKLPLLPEEVTGIEALKAFSQ 319
I +PLL E GIE LK ++
Sbjct: 308 VIAYVPLLRTEAKGIETLKQIAK 330
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 117/312 (37%), Gaps = 43/312 (13%)
Query: 45 SSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET 104
S +I LAE VL++STDPA N+ F Q T + L A+E+DP +
Sbjct: 25 SCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQ 84
Query: 105 GSTEGMD------------SLFSELANA----IPGIDEAMSFAEMLKLVQTMDYSCIVFD 148
+D S+ +L+ A I DE L+ D+ I+FD
Sbjct: 85 YRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDH--IIFD 142
Query: 149 TAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGM 208
TAPTGHT+RLLQ P +D + G M LE
Sbjct: 143 TAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAG--------------------LEKQ 182
Query: 209 KDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDE 268
++ + DP T V V + +L E R EL + ++IN VL E
Sbjct: 183 REQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTE 242
Query: 269 DVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPS 328
L A +Q+ L L L P + G+ AL S+ T QP
Sbjct: 243 AANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNMVGVSAL---SRLLST--QPV 297
Query: 329 TSRDTVEDLERR 340
S + E L++R
Sbjct: 298 ASPSSDEYLQQR 309
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 111/286 (38%), Gaps = 59/286 (20%)
Query: 45 SSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET 104
++ +++ LA++ V + ++DPA +LS TL +NL +DP E E
Sbjct: 344 AAAIAVRLADMGFDVHLTTSDPAAHLSM----------TLNGSLNNLQVSRIDPHEETER 393
Query: 105 GSTEGMDSLFSELANA----------IPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGH 154
+++ EL A P +E F ++++ +V DTAPTGH
Sbjct: 394 YRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGH 453
Query: 155 TLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIER 214
TL LL + + K M K F M L
Sbjct: 454 TLLLLDATGAYHREIAKKMGEKGHF---TTPMMLL------------------------- 485
Query: 215 VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKL 274
+DP+ T + V +PE + E L +L + I IIN L D S L
Sbjct: 486 -----QDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSL-SIADTRSPL 539
Query: 275 LRARMRMQQKYLDQFYMLYDDF--HITKLPLLPEEVTGIEALKAFS 318
L RMR QQ+ L Q + + +P+L E TGI+ LK +
Sbjct: 540 L--RMRAQQE-LPQIESVKRQHASRVALVPVLASEPTGIDKLKQLA 582
>pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 544
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 51 LLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPT---LVNGFSNLYA 93
++AE RP +LI++ D +D FQ F+ P LV FS +
Sbjct: 272 IVAEQRPDLLILTDDVYGTFADEFQSLFSVCPRNTLLVYSFSKYFG 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,096,225
Number of Sequences: 62578
Number of extensions: 361361
Number of successful extensions: 846
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 17
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)