Query 017873
Match_columns 365
No_of_seqs 317 out of 2702
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2825 Putative arsenite-tran 100.0 9.7E-58 2.1E-62 405.9 27.1 309 13-322 4-322 (323)
2 PF02374 ArsA_ATPase: Anion-tr 100.0 4.2E-55 9.2E-60 416.2 27.6 293 28-323 1-305 (305)
3 COG0003 ArsA Predicted ATPase 100.0 1.2E-48 2.6E-53 371.1 31.1 298 27-330 1-311 (322)
4 cd00550 ArsA_ATPase Oxyanion-t 100.0 3.9E-42 8.4E-47 320.2 26.7 241 29-318 1-253 (254)
5 TIGR00345 arsA arsenite-activa 100.0 1.4E-40 3E-45 314.4 30.9 270 44-321 1-284 (284)
6 cd02035 ArsA ArsA ATPase funct 100.0 8.1E-28 1.8E-32 219.0 20.1 207 30-300 1-216 (217)
7 KOG3022 Predicted ATPase, nucl 99.9 2.8E-25 6.1E-30 201.7 11.8 171 22-265 42-223 (300)
8 cd02037 MRP-like MRP (Multiple 99.9 2E-24 4.3E-29 189.0 14.3 167 29-304 1-168 (169)
9 PRK11670 antiporter inner memb 99.9 2.1E-23 4.7E-28 203.6 18.7 172 26-263 106-279 (369)
10 COG0489 Mrp ATPases involved i 99.9 2E-23 4.3E-28 195.2 16.7 192 6-264 33-230 (265)
11 TIGR03029 EpsG chain length de 99.9 3.7E-23 8.1E-28 194.7 13.4 188 6-262 81-274 (274)
12 TIGR01007 eps_fam capsular exo 99.9 2.1E-22 4.5E-27 181.5 12.8 187 10-264 1-191 (204)
13 cd02117 NifH_like This family 99.9 4E-21 8.6E-26 174.3 17.0 199 29-303 2-211 (212)
14 COG0455 flhG Antiactivator of 99.9 2.4E-20 5.2E-25 173.4 22.0 166 27-264 2-177 (262)
15 CHL00175 minD septum-site dete 99.9 3.2E-21 7E-26 182.2 16.2 172 26-264 14-189 (281)
16 TIGR03018 pepcterm_TyrKin exop 99.9 1.6E-21 3.4E-26 176.3 12.8 185 7-261 10-207 (207)
17 PRK13869 plasmid-partitioning 99.9 3.9E-20 8.4E-25 183.0 22.9 51 27-77 121-171 (405)
18 TIGR01969 minD_arch cell divis 99.9 1.1E-20 2.3E-25 175.0 17.1 168 28-263 1-170 (251)
19 PRK13232 nifH nitrogenase redu 99.9 8.8E-21 1.9E-25 178.5 16.3 174 28-263 2-184 (273)
20 PRK11519 tyrosine kinase; Prov 99.8 8.3E-21 1.8E-25 200.6 15.2 190 6-263 504-698 (719)
21 COG2894 MinD Septum formation 99.8 5.5E-21 1.2E-25 168.4 10.4 172 27-264 2-183 (272)
22 TIGR01005 eps_transp_fam exopo 99.8 1.2E-20 2.5E-25 201.0 14.5 190 6-263 524-718 (754)
23 PRK13849 putative crown gall t 99.8 2.3E-19 4.9E-24 164.7 20.7 143 28-263 2-150 (231)
24 PHA02518 ParA-like protein; Pr 99.8 3.5E-20 7.5E-25 167.2 14.8 138 28-263 1-143 (211)
25 PRK09841 cryptic autophosphory 99.8 1.4E-20 3E-25 199.1 14.0 190 6-263 509-703 (726)
26 TIGR01968 minD_bact septum sit 99.8 4E-20 8.6E-25 172.1 14.9 172 27-264 1-174 (261)
27 TIGR03453 partition_RepA plasm 99.8 2.2E-19 4.8E-24 177.1 20.8 52 26-77 103-154 (387)
28 TIGR03371 cellulose_yhjQ cellu 99.8 2.6E-19 5.7E-24 165.4 19.7 51 28-78 2-52 (246)
29 PRK13235 nifH nitrogenase redu 99.8 4.2E-20 9E-25 174.0 14.5 47 28-75 2-48 (274)
30 cd02040 NifH NifH gene encodes 99.8 9.5E-20 2.1E-24 170.8 16.7 48 28-76 2-49 (270)
31 cd03110 Fer4_NifH_child This p 99.8 3.1E-19 6.8E-24 157.4 18.2 148 29-263 1-153 (179)
32 cd02032 Bchl_like This family 99.8 7.3E-20 1.6E-24 171.7 14.7 48 28-76 1-48 (267)
33 PRK13705 plasmid-partitioning 99.8 7E-19 1.5E-23 173.1 21.3 52 26-77 105-157 (388)
34 PRK13233 nifH nitrogenase redu 99.8 1.5E-19 3.2E-24 170.3 15.8 48 28-76 3-52 (275)
35 PRK13230 nitrogenase reductase 99.8 9.6E-20 2.1E-24 172.0 14.5 48 28-76 2-49 (279)
36 PHA02519 plasmid partition pro 99.8 6E-19 1.3E-23 173.3 20.5 51 27-77 106-157 (387)
37 PRK10818 cell division inhibit 99.8 3.8E-19 8.3E-24 167.0 18.1 172 27-263 2-183 (270)
38 PRK13236 nitrogenase reductase 99.8 1.1E-19 2.4E-24 173.0 14.3 48 28-75 6-53 (296)
39 CHL00072 chlL photochlorophyll 99.8 2.5E-19 5.3E-24 170.0 16.3 47 28-75 1-47 (290)
40 PRK13185 chlL protochlorophyll 99.8 3.5E-19 7.7E-24 167.3 16.7 48 28-76 3-50 (270)
41 TIGR01281 DPOR_bchL light-inde 99.8 5.3E-20 1.1E-24 172.7 11.0 47 28-75 1-47 (268)
42 PRK13234 nifH nitrogenase redu 99.8 2.7E-19 5.9E-24 170.2 15.8 49 26-75 3-51 (295)
43 cd02036 MinD Bacterial cell di 99.8 4.2E-19 9.2E-24 155.8 15.9 123 29-263 1-124 (179)
44 TIGR01287 nifH nitrogenase iro 99.8 7.9E-19 1.7E-23 165.4 16.7 46 29-75 2-47 (275)
45 PRK10037 cell division protein 99.8 3.7E-19 8.1E-24 165.4 13.1 50 28-77 2-51 (250)
46 PF01656 CbiA: CobQ/CobB/MinD/ 99.8 8.7E-19 1.9E-23 155.8 12.7 153 30-263 1-158 (195)
47 COG1192 Soj ATPases involved i 99.8 4.2E-18 9.2E-23 158.9 17.4 53 27-79 2-55 (259)
48 TIGR03815 CpaE_hom_Actino heli 99.8 3.6E-18 7.9E-23 164.5 17.4 171 25-263 91-265 (322)
49 PRK13231 nitrogenase reductase 99.8 1.9E-18 4.2E-23 161.8 13.5 47 27-75 2-48 (264)
50 TIGR02016 BchX chlorophyllide 99.8 5.3E-18 1.2E-22 161.2 15.4 45 29-74 2-46 (296)
51 cd02033 BchX Chlorophyllide re 99.7 2.1E-17 4.6E-22 158.3 15.4 50 28-77 31-81 (329)
52 PF06564 YhjQ: YhjQ protein; 99.7 9.6E-17 2.1E-21 146.8 16.2 53 27-79 1-53 (243)
53 COG3640 CooC CO dehydrogenase 99.7 4.9E-17 1.1E-21 145.4 13.0 170 31-263 3-195 (255)
54 cd03111 CpaE_like This protein 99.7 1.4E-16 3.1E-21 128.7 12.5 101 30-262 2-106 (106)
55 PF07015 VirC1: VirC1 protein; 99.7 6.7E-16 1.5E-20 139.4 17.6 144 27-263 1-150 (231)
56 COG1149 MinD superfamily P-loo 99.7 4.3E-16 9.4E-21 142.1 13.1 50 27-77 1-51 (284)
57 cd02038 FleN-like FleN is a me 99.7 2.7E-15 5.9E-20 127.1 15.0 106 30-264 2-108 (139)
58 PF00142 Fer4_NifH: 4Fe-4S iro 99.7 4.9E-16 1.1E-20 142.2 10.8 234 29-339 2-264 (273)
59 PF09140 MipZ: ATPase MipZ; I 99.7 1.1E-16 2.5E-21 145.0 6.3 112 28-156 1-113 (261)
60 cd02042 ParA ParA and ParB of 99.6 2E-15 4.3E-20 121.1 11.6 38 30-67 2-39 (104)
61 COG1348 NifH Nitrogenase subun 99.6 1.6E-14 3.5E-19 128.7 11.3 163 28-263 2-186 (278)
62 TIGR00064 ftsY signal recognit 99.5 2.3E-12 5E-17 121.1 17.2 40 28-67 72-111 (272)
63 cd03114 ArgK-like The function 99.4 4.9E-12 1.1E-16 108.3 13.1 39 31-69 2-40 (148)
64 PF13614 AAA_31: AAA domain; P 99.4 2.3E-13 5E-18 116.9 4.1 50 28-77 1-51 (157)
65 PRK13886 conjugal transfer pro 99.3 1.2E-10 2.6E-15 106.8 19.4 42 28-69 3-44 (241)
66 cd03115 SRP The signal recogni 99.3 8.4E-11 1.8E-15 103.0 17.2 45 30-74 2-47 (173)
67 PRK10867 signal recognition pa 99.3 3.2E-11 7E-16 119.7 15.6 43 27-69 99-142 (433)
68 cd02034 CooC The accessory pro 99.3 5.7E-12 1.2E-16 103.3 8.5 99 31-155 2-100 (116)
69 PRK10416 signal recognition pa 99.3 2.3E-10 5E-15 109.8 19.5 42 28-69 114-155 (318)
70 TIGR00347 bioD dethiobiotin sy 99.3 3.3E-11 7.1E-16 104.8 11.8 36 226-261 131-166 (166)
71 TIGR00959 ffh signal recogniti 99.3 9.4E-11 2E-15 116.4 15.4 43 27-69 98-141 (428)
72 TIGR01425 SRP54_euk signal rec 99.2 2.3E-10 4.9E-15 113.2 16.4 42 28-69 100-141 (429)
73 PRK13768 GTPase; Provisional 99.2 1.3E-09 2.8E-14 101.6 20.7 43 27-69 1-43 (253)
74 PRK00771 signal recognition pa 99.2 3.4E-10 7.4E-15 112.7 15.4 59 11-69 70-136 (437)
75 COG4963 CpaE Flp pilus assembl 99.2 4.5E-10 9.7E-15 107.7 14.1 173 25-266 102-284 (366)
76 cd01983 Fer4_NifH The Fer4_Nif 99.2 3.7E-10 7.9E-15 88.0 11.0 34 30-63 1-34 (99)
77 PRK11889 flhF flagellar biosyn 99.1 2.8E-09 6.1E-14 103.6 15.8 40 29-68 242-281 (436)
78 PRK12726 flagellar biosynthesi 99.1 2.8E-09 6E-14 103.3 15.2 59 11-69 183-247 (407)
79 PRK14974 cell division protein 99.0 5.1E-09 1.1E-13 101.0 15.2 40 28-67 140-179 (336)
80 PRK00090 bioD dithiobiotin syn 99.0 4.2E-08 9E-13 89.4 18.7 68 226-305 135-203 (222)
81 PRK12724 flagellar biosynthesi 99.0 1.8E-08 3.9E-13 99.1 15.7 44 28-71 223-267 (432)
82 PRK12727 flagellar biosynthesi 99.0 1.4E-08 3.1E-13 102.2 14.8 41 29-69 351-393 (559)
83 PF10609 ParA: ParA/MinD ATPas 98.9 4.8E-10 1E-14 84.9 3.0 48 225-277 26-73 (81)
84 TIGR00750 lao LAO/AO transport 98.9 1.7E-07 3.7E-12 89.5 20.3 44 27-70 33-76 (300)
85 PF00448 SRP54: SRP54-type pro 98.9 2.6E-08 5.7E-13 89.2 13.5 39 29-67 2-40 (196)
86 PRK05703 flhF flagellar biosyn 98.9 2.6E-08 5.5E-13 99.4 13.3 40 29-68 222-263 (424)
87 COG1703 ArgK Putative periplas 98.8 1.4E-07 3.1E-12 87.9 16.0 112 19-153 41-155 (323)
88 COG0541 Ffh Signal recognition 98.8 2.3E-07 5.1E-12 90.5 15.6 42 26-67 98-139 (451)
89 PRK12723 flagellar biosynthesi 98.8 1.2E-07 2.6E-12 93.2 13.4 42 27-68 173-218 (388)
90 COG0552 FtsY Signal recognitio 98.7 1.8E-07 4E-12 88.6 13.7 40 27-66 138-177 (340)
91 cd03109 DTBS Dethiobiotin synt 98.7 7E-07 1.5E-11 75.0 15.1 39 226-264 70-108 (134)
92 PRK09435 membrane ATPase/prote 98.7 2.1E-06 4.5E-11 82.9 19.3 45 26-70 54-98 (332)
93 TIGR03499 FlhF flagellar biosy 98.7 5.2E-08 1.1E-12 92.2 8.1 41 28-68 194-236 (282)
94 PRK01077 cobyrinic acid a,c-di 98.6 1.3E-06 2.8E-11 88.2 16.6 41 27-67 3-43 (451)
95 PRK06731 flhF flagellar biosyn 98.6 1.3E-06 2.9E-11 81.9 14.7 40 29-68 76-115 (270)
96 KOG1532 GTPase XAB1, interacts 98.5 1.5E-05 3.2E-10 73.6 18.2 41 27-67 18-58 (366)
97 PF03308 ArgK: ArgK protein; 98.5 9.3E-07 2E-11 81.4 9.7 102 29-153 30-133 (266)
98 PRK14723 flhF flagellar biosyn 98.4 4.3E-06 9.3E-11 88.1 15.4 39 29-67 186-226 (767)
99 KOG0780 Signal recognition par 98.4 4.5E-06 9.8E-11 80.2 13.3 50 27-76 100-150 (483)
100 KOG0781 Signal recognition par 98.4 4.7E-06 1E-10 81.9 13.0 161 25-263 375-540 (587)
101 PRK05632 phosphate acetyltrans 98.4 7.4E-06 1.6E-10 86.7 15.1 36 28-63 3-38 (684)
102 PRK12374 putative dithiobiotin 98.3 4.6E-05 9.9E-10 70.0 17.5 70 225-306 136-205 (231)
103 COG0132 BioD Dethiobiotin synt 98.3 2.2E-05 4.7E-10 71.3 14.8 41 226-267 138-178 (223)
104 PF13500 AAA_26: AAA domain; P 98.3 1.1E-05 2.3E-10 72.3 12.8 39 225-263 130-168 (199)
105 PF03029 ATP_bind_1: Conserved 98.3 2.6E-05 5.7E-10 72.0 14.7 36 34-69 2-37 (238)
106 PRK14722 flhF flagellar biosyn 98.3 2.6E-05 5.7E-10 76.3 14.9 39 29-67 138-178 (374)
107 COG1419 FlhF Flagellar GTP-bin 98.3 1.3E-05 2.7E-10 78.3 12.5 39 28-66 203-243 (407)
108 PRK14493 putative bifunctional 98.2 5.5E-06 1.2E-10 78.0 9.5 39 29-68 2-40 (274)
109 PRK06995 flhF flagellar biosyn 98.2 2.2E-05 4.7E-10 79.2 13.5 39 29-67 257-297 (484)
110 cd01394 radB RadB. The archaea 98.2 2E-05 4.4E-10 71.4 11.2 52 17-68 6-59 (218)
111 PRK00784 cobyric acid synthase 98.1 0.00018 3.9E-09 73.4 17.7 35 28-62 3-37 (488)
112 COG1797 CobB Cobyrinic acid a, 98.0 0.00016 3.6E-09 70.9 14.7 36 29-64 2-37 (451)
113 PRK09361 radB DNA repair and r 98.0 6.2E-05 1.3E-09 68.6 11.0 52 14-65 7-60 (225)
114 cd01124 KaiC KaiC is a circadi 97.9 4.4E-05 9.5E-10 67.1 9.0 38 30-67 1-38 (187)
115 TIGR02237 recomb_radB DNA repa 97.9 7.6E-05 1.7E-09 67.1 10.7 48 19-66 1-50 (209)
116 PRK06278 cobyrinic acid a,c-di 97.9 0.0002 4.3E-09 72.4 14.5 63 226-303 352-418 (476)
117 KOG1534 Putative transcription 97.9 0.00021 4.6E-09 63.7 12.4 38 31-68 6-43 (273)
118 PRK06067 flagellar accessory p 97.9 0.00019 4.2E-09 65.8 12.9 52 16-67 11-64 (234)
119 TIGR03878 thermo_KaiC_2 KaiC d 97.9 0.00035 7.6E-09 65.3 14.7 39 29-67 37-75 (259)
120 TIGR02012 tigrfam_recA protein 97.9 4.7E-05 1E-09 73.1 8.6 56 12-67 36-94 (321)
121 TIGR00379 cobB cobyrinic acid 97.9 0.00058 1.2E-08 69.0 16.8 35 30-64 2-36 (449)
122 TIGR00313 cobQ cobyric acid sy 97.9 0.0003 6.4E-09 71.5 14.3 34 31-64 2-35 (475)
123 TIGR02655 circ_KaiC circadian 97.8 0.0002 4.3E-09 73.0 12.6 54 14-67 247-302 (484)
124 KOG1533 Predicted GTPase [Gene 97.8 5.9E-05 1.3E-09 68.2 7.4 37 32-68 6-42 (290)
125 cd00983 recA RecA is a bacter 97.8 7.2E-05 1.6E-09 71.9 8.5 58 11-68 35-95 (325)
126 PF06745 KaiC: KaiC; InterPro 97.8 0.00015 3.3E-09 66.1 10.0 51 17-67 6-59 (226)
127 PRK09354 recA recombinase A; P 97.7 0.00011 2.3E-09 71.3 8.3 60 10-69 39-101 (349)
128 PRK13896 cobyrinic acid a,c-di 97.7 0.00076 1.7E-08 67.5 14.2 38 29-66 3-40 (433)
129 PRK13505 formate--tetrahydrofo 97.7 4.6E-05 9.9E-10 77.0 5.4 70 7-78 29-107 (557)
130 COG1341 Predicted GTPase or GT 97.7 0.00021 4.5E-09 69.6 9.5 39 29-67 74-112 (398)
131 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.0006 1.3E-08 62.4 12.1 53 17-69 6-66 (235)
132 cd01120 RecA-like_NTPases RecA 97.7 0.00071 1.5E-08 57.3 11.5 39 31-69 2-40 (165)
133 PRK14721 flhF flagellar biosyn 97.7 0.00095 2.1E-08 66.4 13.8 39 29-67 192-232 (420)
134 PRK08533 flagellar accessory p 97.6 0.00033 7.1E-09 64.4 9.8 52 16-67 10-63 (230)
135 cd01393 recA_like RecA is a b 97.6 0.0013 2.8E-08 59.8 13.5 52 16-67 5-64 (226)
136 PRK04328 hypothetical protein; 97.6 0.0015 3.2E-08 60.8 13.6 53 16-68 9-63 (249)
137 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.0014 3.1E-08 60.3 13.4 52 16-67 7-60 (237)
138 cd01121 Sms Sms (bacterial rad 97.5 0.00083 1.8E-08 66.1 11.4 53 15-67 67-121 (372)
139 PRK09302 circadian clock prote 97.5 0.0015 3.1E-08 67.1 13.1 56 12-67 255-312 (509)
140 PLN02974 adenosylmethionine-8- 97.5 0.031 6.7E-07 60.4 23.3 68 226-310 216-283 (817)
141 COG1066 Sms Predicted ATP-depe 97.5 0.0017 3.7E-08 63.5 12.4 113 15-165 78-192 (456)
142 COG0529 CysC Adenylylsulfate k 97.5 0.00017 3.6E-09 62.8 5.0 50 26-75 21-71 (197)
143 TIGR00416 sms DNA repair prote 97.5 0.00086 1.9E-08 67.7 10.8 52 16-67 80-133 (454)
144 PRK11823 DNA repair protein Ra 97.4 0.0011 2.3E-08 66.9 11.3 52 16-67 66-119 (446)
145 COG0467 RAD55 RecA-superfamily 97.4 0.001 2.2E-08 62.1 10.0 51 17-67 10-62 (260)
146 TIGR03880 KaiC_arch_3 KaiC dom 97.4 0.0011 2.3E-08 60.5 9.7 51 17-67 3-55 (224)
147 PF13401 AAA_22: AAA domain; P 97.4 0.0012 2.6E-08 54.3 9.2 45 27-71 3-52 (131)
148 PF01583 APS_kinase: Adenylyls 97.4 0.00026 5.7E-09 60.9 4.9 37 29-65 3-39 (156)
149 PRK04301 radA DNA repair and r 97.4 0.0013 2.8E-08 63.3 10.3 58 12-69 84-149 (317)
150 PRK07667 uridine kinase; Provi 97.4 0.0004 8.8E-09 61.9 6.2 40 27-66 16-55 (193)
151 TIGR02238 recomb_DMC1 meiotic 97.3 0.0014 3E-08 63.0 10.2 54 16-69 82-143 (313)
152 cd00477 FTHFS Formyltetrahydro 97.3 0.00033 7E-09 70.2 5.9 51 26-78 37-90 (524)
153 PRK09519 recA DNA recombinatio 97.3 0.00095 2.1E-08 70.9 9.6 59 11-69 40-101 (790)
154 PHA02542 41 41 helicase; Provi 97.3 0.00035 7.7E-09 70.7 6.1 60 15-74 175-237 (473)
155 PLN03187 meiotic recombination 97.3 0.0027 5.9E-08 61.7 11.3 53 17-69 113-173 (344)
156 TIGR01618 phage_P_loop phage n 97.3 0.00087 1.9E-08 61.0 7.4 33 28-67 12-44 (220)
157 PRK04296 thymidine kinase; Pro 97.3 0.00076 1.6E-08 60.1 6.9 34 29-62 3-36 (190)
158 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0049 1.1E-07 53.3 11.3 35 30-65 5-39 (159)
159 PRK00889 adenylylsulfate kinas 97.2 0.00063 1.4E-08 59.5 5.8 39 29-67 5-43 (175)
160 TIGR02236 recomb_radA DNA repa 97.2 0.0023 5E-08 61.3 10.2 56 12-67 77-140 (310)
161 cd03113 CTGs CTP synthetase (C 97.2 0.0052 1.1E-07 56.3 11.3 39 30-68 3-42 (255)
162 PRK08233 hypothetical protein; 97.2 0.0013 2.7E-08 57.5 7.2 37 29-67 4-40 (182)
163 PRK06696 uridine kinase; Valid 97.2 0.00074 1.6E-08 61.6 5.8 41 26-66 20-60 (223)
164 PRK07952 DNA replication prote 97.1 0.00055 1.2E-08 63.4 4.8 36 29-64 100-135 (244)
165 PRK09302 circadian clock prote 97.1 0.0044 9.5E-08 63.6 11.9 52 16-67 17-71 (509)
166 PRK13506 formate--tetrahydrofo 97.1 0.00067 1.5E-08 68.6 5.6 52 26-79 53-107 (578)
167 PTZ00035 Rad51 protein; Provis 97.1 0.0036 7.9E-08 60.8 10.3 52 16-67 104-163 (337)
168 COG3598 RepA RecA-family ATPas 97.1 0.0054 1.2E-07 58.2 10.9 37 30-66 91-137 (402)
169 PRK00089 era GTPase Era; Revie 97.1 0.081 1.8E-06 50.1 19.4 38 225-263 86-123 (292)
170 cd00984 DnaB_C DnaB helicase C 97.1 0.0011 2.5E-08 60.8 6.2 50 18-67 2-53 (242)
171 PRK05973 replicative DNA helic 97.0 0.00089 1.9E-08 61.7 5.1 39 29-67 65-103 (237)
172 PF00154 RecA: recA bacterial 97.0 0.015 3.3E-07 55.8 13.4 59 10-68 32-93 (322)
173 smart00382 AAA ATPases associa 97.0 0.0024 5.2E-08 51.9 6.9 40 29-68 3-42 (148)
174 PLN03186 DNA repair protein RA 97.0 0.006 1.3E-07 59.3 10.6 54 16-69 109-170 (342)
175 TIGR02655 circ_KaiC circadian 97.0 0.0038 8.2E-08 63.7 9.6 52 16-67 7-61 (484)
176 PRK03846 adenylylsulfate kinas 97.0 0.0014 3.1E-08 58.6 5.8 41 27-67 23-63 (198)
177 cd02028 UMPK_like Uridine mono 97.0 0.0011 2.3E-08 58.5 4.8 36 30-65 1-36 (179)
178 cd01122 GP4d_helicase GP4d_hel 96.9 0.00083 1.8E-08 62.9 4.2 55 13-67 14-70 (271)
179 cd01125 repA Hexameric Replica 96.9 0.0075 1.6E-07 55.5 10.4 38 30-67 3-52 (239)
180 PHA00729 NTP-binding motif con 96.9 0.0017 3.6E-08 59.3 5.7 27 27-53 16-42 (226)
181 TIGR00708 cobA cob(I)alamin ad 96.9 0.0089 1.9E-07 52.3 10.0 36 30-66 8-43 (173)
182 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0011 2.3E-08 61.6 4.5 37 30-66 1-37 (249)
183 COG1159 Era GTPase [General fu 96.9 0.062 1.3E-06 50.7 16.1 44 217-263 81-124 (298)
184 KOG0635 Adenosine 5'-phosphosu 96.9 0.0019 4E-08 54.8 5.3 56 20-76 24-80 (207)
185 PF13207 AAA_17: AAA domain; P 96.9 0.0011 2.4E-08 53.9 3.9 31 30-65 1-31 (121)
186 PRK05439 pantothenate kinase; 96.9 0.0026 5.6E-08 61.0 6.8 53 13-65 68-125 (311)
187 cd02027 APSK Adenosine 5'-phos 96.8 0.0015 3.2E-08 55.8 4.6 38 30-67 1-38 (149)
188 cd04170 EF-G_bact Elongation f 96.8 0.013 2.9E-07 54.9 11.4 38 225-263 89-126 (268)
189 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0024 5.2E-08 58.3 6.1 52 16-67 6-59 (229)
190 PF13479 AAA_24: AAA domain 96.8 0.0052 1.1E-07 55.7 8.2 31 29-67 4-34 (213)
191 PF08423 Rad51: Rad51; InterP 96.8 0.012 2.7E-07 54.9 10.7 59 16-74 24-90 (256)
192 PF13481 AAA_25: AAA domain; P 96.8 0.0013 2.8E-08 58.1 3.8 39 29-67 33-81 (193)
193 COG2874 FlaH Predicted ATPases 96.8 0.11 2.4E-06 46.8 15.8 37 29-65 29-65 (235)
194 PF03796 DnaB_C: DnaB-like hel 96.8 0.0026 5.6E-08 59.3 5.9 52 16-67 6-59 (259)
195 TIGR00073 hypB hydrogenase acc 96.7 0.012 2.6E-07 52.9 10.0 47 21-68 15-61 (207)
196 TIGR00176 mobB molybdopterin-g 96.7 0.0022 4.8E-08 55.2 4.9 37 30-66 1-37 (155)
197 COG1484 DnaC DNA replication p 96.7 0.002 4.4E-08 60.1 4.9 36 29-64 106-141 (254)
198 TIGR02239 recomb_RAD51 DNA rep 96.7 0.011 2.4E-07 57.0 10.1 52 16-67 82-141 (316)
199 PF13245 AAA_19: Part of AAA d 96.7 0.0031 6.7E-08 47.5 4.8 39 28-66 10-52 (76)
200 PF03205 MobB: Molybdopterin g 96.7 0.0032 6.9E-08 53.3 5.5 37 29-66 2-39 (140)
201 TIGR03600 phage_DnaB phage rep 96.7 0.0031 6.8E-08 63.1 6.3 52 16-67 181-234 (421)
202 PRK06762 hypothetical protein; 96.7 0.0022 4.9E-08 55.3 4.6 35 28-65 2-36 (166)
203 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.0026 5.7E-08 57.6 5.1 49 17-65 27-75 (226)
204 cd04163 Era Era subfamily. Er 96.6 0.027 5.9E-07 47.3 11.0 38 225-263 84-121 (168)
205 PF13191 AAA_16: AAA ATPase do 96.6 0.0024 5.2E-08 55.6 4.3 58 9-67 6-63 (185)
206 PF01695 IstB_IS21: IstB-like 96.6 0.0026 5.5E-08 56.1 4.5 36 30-65 49-84 (178)
207 PRK14494 putative molybdopteri 96.6 0.0051 1.1E-07 56.3 6.4 37 28-64 1-37 (229)
208 PF09848 DUF2075: Uncharacteri 96.6 0.0054 1.2E-07 59.9 7.0 39 28-66 1-41 (352)
209 PRK06526 transposase; Provisio 96.6 0.0016 3.4E-08 60.8 2.9 36 29-64 99-134 (254)
210 PRK08506 replicative DNA helic 96.5 0.0044 9.5E-08 63.0 6.2 53 15-67 178-231 (472)
211 cd00009 AAA The AAA+ (ATPases 96.5 0.0049 1.1E-07 50.6 5.4 45 23-67 14-58 (151)
212 PRK05541 adenylylsulfate kinas 96.5 0.0044 9.5E-08 54.1 5.4 39 28-66 7-45 (176)
213 PRK05595 replicative DNA helic 96.5 0.0046 9.9E-08 62.4 6.1 54 14-67 186-241 (444)
214 PRK08084 DNA replication initi 96.5 0.004 8.7E-08 57.3 5.1 50 17-66 34-83 (235)
215 COG4088 Predicted nucleotide k 96.4 0.0026 5.7E-08 56.8 3.4 40 28-67 1-40 (261)
216 PRK05480 uridine/cytidine kina 96.4 0.0061 1.3E-07 54.8 5.8 39 27-67 5-43 (209)
217 COG0468 RecA RecA/RadA recombi 96.4 0.16 3.4E-06 48.0 15.4 54 18-71 48-103 (279)
218 PRK05986 cob(I)alamin adenolsy 96.4 0.035 7.5E-07 49.4 10.3 37 30-66 24-60 (191)
219 TIGR00455 apsK adenylylsulfate 96.4 0.0067 1.5E-07 53.4 5.8 41 26-66 16-56 (184)
220 cd02019 NK Nucleoside/nucleoti 96.4 0.0062 1.3E-07 44.8 4.6 32 31-64 2-33 (69)
221 PRK08760 replicative DNA helic 96.4 0.0056 1.2E-07 62.3 5.8 52 16-67 216-269 (476)
222 PRK12377 putative replication 96.4 0.0051 1.1E-07 57.1 5.1 37 29-65 102-138 (248)
223 PRK08006 replicative DNA helic 96.4 0.0061 1.3E-07 61.9 6.0 55 13-67 208-264 (471)
224 cd03116 MobB Molybdenum is an 96.4 0.0082 1.8E-07 51.9 6.0 39 28-66 1-39 (159)
225 PRK09270 nucleoside triphospha 96.3 0.0084 1.8E-07 54.9 6.3 50 18-67 22-73 (229)
226 TIGR00665 DnaB replicative DNA 96.3 0.0071 1.5E-07 60.8 6.3 52 16-67 182-235 (434)
227 PRK06749 replicative DNA helic 96.3 0.0064 1.4E-07 61.0 5.7 52 16-67 173-225 (428)
228 PRK15453 phosphoribulokinase; 96.3 0.0073 1.6E-07 56.9 5.7 42 27-68 4-45 (290)
229 PRK08727 hypothetical protein; 96.3 0.0066 1.4E-07 55.8 5.4 41 25-65 38-78 (233)
230 cd02029 PRK_like Phosphoribulo 96.3 0.0063 1.4E-07 56.9 5.1 40 30-69 1-40 (277)
231 PRK08939 primosomal protein Dn 96.3 0.0085 1.8E-07 57.4 6.1 38 28-65 156-193 (306)
232 PRK05748 replicative DNA helic 96.2 0.0073 1.6E-07 61.0 5.8 52 16-67 190-243 (448)
233 PRK08840 replicative DNA helic 96.2 0.0076 1.6E-07 61.1 5.9 53 15-67 203-257 (464)
234 TIGR03575 selen_PSTK_euk L-ser 96.2 0.0052 1.1E-07 59.6 4.5 35 31-65 2-37 (340)
235 COG4240 Predicted kinase [Gene 96.2 0.0079 1.7E-07 54.5 5.1 40 26-65 48-88 (300)
236 COG1072 CoaA Panthothenate kin 96.2 0.012 2.6E-07 54.8 6.4 59 8-66 59-122 (283)
237 PRK06321 replicative DNA helic 96.2 0.0085 1.8E-07 60.8 5.9 52 16-67 213-266 (472)
238 PRK09183 transposase/IS protei 96.2 0.0072 1.6E-07 56.5 5.0 35 30-64 104-138 (259)
239 PRK09165 replicative DNA helic 96.2 0.0083 1.8E-07 61.4 5.8 52 16-67 204-271 (497)
240 PF00485 PRK: Phosphoribulokin 96.1 0.0065 1.4E-07 54.1 4.4 36 30-65 1-40 (194)
241 cd04165 GTPBP1_like GTPBP1-lik 96.1 0.35 7.7E-06 44.1 15.9 38 225-263 111-148 (224)
242 cd01894 EngA1 EngA1 subfamily. 96.1 0.057 1.2E-06 45.1 9.9 38 225-263 78-115 (157)
243 PRK08903 DnaA regulatory inact 96.1 0.01 2.2E-07 54.1 5.6 39 28-66 42-80 (227)
244 PRK06904 replicative DNA helic 96.1 0.009 2E-07 60.7 5.7 52 16-67 208-261 (472)
245 PF08433 KTI12: Chromatin asso 96.1 0.0079 1.7E-07 56.6 4.7 38 28-65 1-38 (270)
246 COG1618 Predicted nucleotide k 96.0 0.0077 1.7E-07 51.8 4.0 34 31-64 8-41 (179)
247 TIGR00436 era GTP-binding prot 96.0 0.07 1.5E-06 50.0 10.9 37 225-263 81-117 (270)
248 PRK10751 molybdopterin-guanine 96.0 0.014 2.9E-07 51.2 5.5 39 27-65 5-43 (173)
249 cd01884 EF_Tu EF-Tu subfamily. 95.9 0.17 3.6E-06 45.2 12.5 39 225-263 90-128 (195)
250 cd00544 CobU Adenosylcobinamid 95.9 0.028 6.1E-07 49.1 7.3 35 30-67 1-35 (169)
251 cd02025 PanK Pantothenate kina 95.9 0.011 2.4E-07 53.9 4.9 38 30-67 1-40 (220)
252 PRK06893 DNA replication initi 95.9 0.012 2.6E-07 53.9 5.2 38 28-65 39-76 (229)
253 cd02023 UMPK Uridine monophosp 95.9 0.01 2.3E-07 52.8 4.6 35 30-66 1-35 (198)
254 PRK06835 DNA replication prote 95.9 0.0088 1.9E-07 57.9 4.4 37 29-65 184-220 (329)
255 TIGR02640 gas_vesic_GvpN gas v 95.9 0.02 4.4E-07 53.5 6.6 61 12-77 7-67 (262)
256 TIGR00554 panK_bact pantothena 95.9 0.019 4.1E-07 54.6 6.3 42 26-67 60-103 (290)
257 PF13086 AAA_11: AAA domain; P 95.9 0.0098 2.1E-07 53.4 4.3 45 19-65 10-62 (236)
258 PRK05636 replicative DNA helic 95.9 0.014 3E-07 59.8 5.7 52 16-67 252-305 (505)
259 PRK08181 transposase; Validate 95.8 0.01 2.2E-07 55.8 4.3 35 30-64 108-142 (269)
260 PRK00411 cdc6 cell division co 95.8 0.021 4.6E-07 56.4 6.8 61 9-69 36-98 (394)
261 PF06418 CTP_synth_N: CTP synt 95.8 0.057 1.2E-06 50.0 8.8 40 29-68 3-43 (276)
262 PRK10463 hydrogenase nickel in 95.8 0.059 1.3E-06 51.1 9.2 50 17-67 93-142 (290)
263 TIGR00041 DTMP_kinase thymidyl 95.8 0.026 5.7E-07 49.8 6.5 37 29-65 4-40 (195)
264 PF13604 AAA_30: AAA domain; P 95.7 0.015 3.2E-07 52.0 4.8 46 19-65 10-55 (196)
265 PRK07004 replicative DNA helic 95.7 0.014 3.1E-07 59.1 5.2 51 17-67 201-253 (460)
266 TIGR03346 chaperone_ClpB ATP-d 95.7 0.029 6.3E-07 61.2 7.8 47 29-75 596-645 (852)
267 PF05729 NACHT: NACHT domain 95.7 0.011 2.5E-07 50.1 3.8 28 29-56 1-28 (166)
268 cd00881 GTP_translation_factor 95.7 0.072 1.6E-06 46.1 8.9 38 225-263 87-124 (189)
269 PRK05642 DNA replication initi 95.7 0.014 3.1E-07 53.6 4.5 37 29-65 46-82 (234)
270 PRK06547 hypothetical protein; 95.6 0.018 3.8E-07 50.5 4.7 36 25-65 12-47 (172)
271 cd01672 TMPK Thymidine monopho 95.6 0.03 6.6E-07 49.2 6.2 36 30-65 2-37 (200)
272 KOG0744 AAA+-type ATPase [Post 95.6 0.098 2.1E-06 50.0 9.6 51 27-77 176-230 (423)
273 PRK10865 protein disaggregatio 95.5 0.04 8.7E-07 60.1 8.1 37 29-65 599-635 (857)
274 PF00931 NB-ARC: NB-ARC domain 95.5 0.014 3E-07 54.8 4.1 47 26-72 17-65 (287)
275 PF12846 AAA_10: AAA-like doma 95.5 0.026 5.6E-07 52.9 5.9 40 31-72 4-43 (304)
276 TIGR03345 VI_ClpV1 type VI sec 95.5 0.029 6.3E-07 61.1 6.9 48 28-75 596-646 (852)
277 cd01886 EF-G Elongation factor 95.5 0.13 2.9E-06 48.3 10.6 37 226-263 90-126 (270)
278 PRK04220 2-phosphoglycerate ki 95.5 0.029 6.4E-07 53.4 5.9 44 19-66 83-126 (301)
279 PF13671 AAA_33: AAA domain; P 95.4 0.01 2.2E-07 49.5 2.5 32 30-66 1-32 (143)
280 cd02021 GntK Gluconate kinase 95.4 0.015 3.2E-07 49.2 3.6 33 30-67 1-33 (150)
281 PRK00131 aroK shikimate kinase 95.4 0.016 3.6E-07 49.9 3.9 33 28-65 4-36 (175)
282 PRK08116 hypothetical protein; 95.4 0.022 4.7E-07 53.6 4.9 36 29-64 115-150 (268)
283 PRK14495 putative molybdopteri 95.4 0.02 4.4E-07 57.0 4.9 37 28-64 1-37 (452)
284 PF07728 AAA_5: AAA domain (dy 95.4 0.031 6.7E-07 46.6 5.3 44 31-77 2-45 (139)
285 PRK15494 era GTPase Era; Provi 95.4 0.15 3.3E-06 49.6 10.8 19 31-49 55-73 (339)
286 PF06414 Zeta_toxin: Zeta toxi 95.4 0.016 3.5E-07 51.8 3.7 41 24-66 11-51 (199)
287 cd04167 Snu114p Snu114p subfam 95.4 0.049 1.1E-06 49.1 6.9 24 31-54 3-26 (213)
288 PRK06921 hypothetical protein; 95.4 0.022 4.7E-07 53.5 4.7 37 28-64 117-154 (266)
289 PRK14489 putative bifunctional 95.3 0.027 5.9E-07 55.4 5.5 40 27-66 204-243 (366)
290 PRK06217 hypothetical protein; 95.3 0.025 5.5E-07 49.8 4.6 32 30-66 3-34 (183)
291 TIGR02928 orc1/cdc6 family rep 95.2 0.042 9.1E-07 53.6 6.5 61 9-69 21-87 (365)
292 PRK07414 cob(I)yrinic acid a,c 95.2 0.24 5.2E-06 43.5 10.5 47 19-67 14-60 (178)
293 cd01129 PulE-GspE PulE/GspE Th 95.2 0.081 1.8E-06 49.6 8.0 44 19-63 72-115 (264)
294 COG1763 MobB Molybdopterin-gua 95.2 0.029 6.4E-07 48.5 4.5 40 28-67 2-41 (161)
295 TIGR02639 ClpA ATP-dependent C 95.2 0.077 1.7E-06 57.0 8.7 43 30-75 486-531 (731)
296 PF01926 MMR_HSR1: 50S ribosom 95.1 0.12 2.7E-06 41.4 8.0 36 225-262 81-116 (116)
297 COG1110 Reverse gyrase [DNA re 95.1 0.46 1E-05 51.7 14.0 29 35-63 104-132 (1187)
298 cd04168 TetM_like Tet(M)-like 95.1 0.3 6.4E-06 45.0 11.3 37 226-263 90-126 (237)
299 PF13173 AAA_14: AAA domain 95.1 0.032 6.9E-07 46.1 4.4 39 28-67 2-40 (128)
300 PF13238 AAA_18: AAA domain; P 95.1 0.02 4.3E-07 46.5 3.1 22 31-52 1-22 (129)
301 PLN03046 D-glycerate 3-kinase; 95.0 0.038 8.3E-07 54.8 5.4 40 27-66 211-250 (460)
302 cd03112 CobW_like The function 95.0 0.25 5.4E-06 42.4 10.0 35 30-66 2-36 (158)
303 PRK12339 2-phosphoglycerate ki 95.0 0.025 5.4E-07 50.7 3.8 34 28-65 3-36 (197)
304 PLN02796 D-glycerate 3-kinase 95.0 0.036 7.8E-07 53.7 5.1 40 27-66 99-138 (347)
305 COG1102 Cmk Cytidylate kinase 95.0 0.022 4.7E-07 49.1 3.1 24 30-53 2-25 (179)
306 CHL00095 clpC Clp protease ATP 95.0 0.062 1.3E-06 58.5 7.4 36 30-65 541-576 (821)
307 PRK12323 DNA polymerase III su 94.9 0.5 1.1E-05 49.7 13.4 36 18-53 27-63 (700)
308 PRK05380 pyrG CTP synthetase; 94.9 0.16 3.4E-06 52.0 9.6 39 29-67 4-43 (533)
309 PRK11034 clpA ATP-dependent Cl 94.9 0.076 1.6E-06 57.0 7.6 65 9-76 464-536 (758)
310 COG0504 PyrG CTP synthase (UTP 94.8 0.21 4.5E-06 50.1 9.9 38 30-67 4-42 (533)
311 PRK05506 bifunctional sulfate 94.8 0.049 1.1E-06 57.5 6.0 41 26-66 458-498 (632)
312 cd02024 NRK1 Nicotinamide ribo 94.7 0.03 6.5E-07 49.8 3.5 32 30-65 1-32 (187)
313 PLN02327 CTP synthase 94.7 0.28 6.2E-06 50.3 10.9 39 29-67 3-42 (557)
314 TIGR00235 udk uridine kinase. 94.7 0.049 1.1E-06 48.9 4.9 37 28-66 6-42 (207)
315 PF01935 DUF87: Domain of unkn 94.7 0.057 1.2E-06 49.1 5.3 37 28-65 24-61 (229)
316 PF03266 NTPase_1: NTPase; In 94.7 0.038 8.3E-07 48.2 4.0 30 31-60 2-31 (168)
317 PRK12740 elongation factor G; 94.7 0.17 3.7E-06 53.7 9.7 38 225-263 85-122 (668)
318 PRK07773 replicative DNA helic 94.7 0.043 9.3E-07 60.2 5.3 52 16-67 204-257 (886)
319 PRK06851 hypothetical protein; 94.7 0.088 1.9E-06 51.6 6.9 41 26-66 212-252 (367)
320 PF00004 AAA: ATPase family as 94.6 0.049 1.1E-06 44.4 4.4 32 31-65 1-32 (132)
321 PHA02530 pseT polynucleotide k 94.6 0.034 7.4E-07 52.8 3.9 35 28-66 2-36 (300)
322 PRK14958 DNA polymerase III su 94.6 0.48 1E-05 48.7 12.4 36 18-53 27-63 (509)
323 TIGR00337 PyrG CTP synthase. C 94.6 0.34 7.4E-06 49.5 11.0 39 29-67 3-42 (525)
324 PRK05537 bifunctional sulfate 94.5 0.054 1.2E-06 56.3 5.3 37 29-65 393-430 (568)
325 COG3854 SpoIIIAA ncharacterize 94.5 0.28 6.2E-06 44.9 9.1 52 13-65 123-179 (308)
326 smart00763 AAA_PrkA PrkA AAA d 94.5 0.05 1.1E-06 53.1 4.6 47 8-54 56-104 (361)
327 PRK10490 sensor protein KdpD; 94.4 1.8 3.8E-05 47.8 17.1 42 26-67 22-65 (895)
328 cd04169 RF3 RF3 subfamily. Pe 94.4 0.91 2E-05 42.6 12.9 38 225-263 96-133 (267)
329 PRK14957 DNA polymerase III su 94.4 0.57 1.2E-05 48.5 12.4 35 19-53 28-63 (546)
330 TIGR00991 3a0901s02IAP34 GTP-b 94.3 0.95 2.1E-05 43.4 12.9 20 29-48 39-58 (313)
331 PRK00093 GTP-binding protein D 94.3 0.23 5E-06 49.8 9.4 20 29-49 3-22 (435)
332 COG0542 clpA ATP-binding subun 94.3 0.064 1.4E-06 57.1 5.4 49 28-78 521-574 (786)
333 TIGR00490 aEF-2 translation el 94.3 0.078 1.7E-06 56.9 6.1 38 225-263 111-148 (720)
334 COG0305 DnaB Replicative DNA h 94.3 0.086 1.9E-06 52.7 5.9 52 15-66 182-235 (435)
335 PRK14964 DNA polymerase III su 94.3 0.84 1.8E-05 46.6 13.1 36 18-53 24-60 (491)
336 COG2074 2-phosphoglycerate kin 94.2 0.051 1.1E-06 50.1 3.9 36 26-65 87-122 (299)
337 PRK07933 thymidylate kinase; V 94.2 0.071 1.5E-06 48.3 4.9 36 30-65 2-37 (213)
338 PRK06761 hypothetical protein; 94.2 0.049 1.1E-06 51.5 3.9 39 28-66 3-42 (282)
339 PTZ00301 uridine kinase; Provi 94.1 0.099 2.1E-06 47.3 5.6 37 29-65 4-42 (210)
340 PRK13946 shikimate kinase; Pro 94.1 0.058 1.3E-06 47.5 4.0 33 28-65 10-42 (184)
341 PRK09866 hypothetical protein; 94.1 0.54 1.2E-05 49.2 11.4 30 28-63 69-98 (741)
342 PRK00652 lpxK tetraacyldisacch 94.1 0.067 1.5E-06 51.7 4.7 34 35-68 58-91 (325)
343 TIGR01313 therm_gnt_kin carboh 94.1 0.05 1.1E-06 46.7 3.4 31 32-67 2-32 (163)
344 cd01895 EngA2 EngA2 subfamily. 94.1 3.1 6.7E-05 34.8 15.2 38 225-263 86-123 (174)
345 COG2403 Predicted GTPase [Gene 94.0 0.082 1.8E-06 51.3 5.0 43 22-64 121-163 (449)
346 PRK08118 topology modulation p 94.0 0.054 1.2E-06 47.1 3.4 22 31-52 4-25 (167)
347 PRK04040 adenylate kinase; Pro 94.0 0.072 1.5E-06 47.3 4.3 26 28-53 2-27 (188)
348 cd02020 CMPK Cytidine monophos 93.9 0.05 1.1E-06 45.4 3.1 31 30-65 1-31 (147)
349 PF05970 PIF1: PIF1-like helic 93.9 0.075 1.6E-06 52.2 4.7 38 27-64 21-58 (364)
350 PRK13947 shikimate kinase; Pro 93.9 0.086 1.9E-06 45.5 4.5 31 31-66 4-34 (171)
351 PRK00698 tmk thymidylate kinas 93.8 0.11 2.4E-06 46.1 5.3 35 29-63 4-38 (205)
352 TIGR00682 lpxK tetraacyldisacc 93.8 0.083 1.8E-06 50.7 4.7 32 36-67 38-69 (311)
353 PRK07003 DNA polymerase III su 93.8 0.63 1.4E-05 49.7 11.4 36 18-53 27-63 (830)
354 PF05673 DUF815: Protein of un 93.8 0.12 2.5E-06 47.8 5.4 69 8-76 32-100 (249)
355 COG1936 Predicted nucleotide k 93.8 0.073 1.6E-06 46.4 3.8 26 31-60 3-28 (180)
356 COG2256 MGS1 ATPase related to 93.8 0.073 1.6E-06 52.2 4.2 44 8-51 28-71 (436)
357 PF00910 RNA_helicase: RNA hel 93.8 0.063 1.4E-06 43.0 3.2 25 31-55 1-25 (107)
358 COG2109 BtuR ATP:corrinoid ade 93.7 2.4 5.2E-05 37.6 13.1 34 31-65 32-65 (198)
359 PRK14951 DNA polymerase III su 93.7 0.71 1.5E-05 48.5 11.6 37 18-54 27-64 (618)
360 COG1855 ATPase (PilT family) [ 93.7 0.07 1.5E-06 53.0 3.9 30 30-59 265-294 (604)
361 PLN03025 replication factor C 93.6 0.1 2.2E-06 50.2 5.0 49 18-66 24-72 (319)
362 PLN02924 thymidylate kinase 93.5 0.14 3.1E-06 46.6 5.6 37 28-64 16-52 (220)
363 PRK01906 tetraacyldisaccharide 93.5 0.11 2.4E-06 50.4 5.1 38 30-67 58-97 (338)
364 PRK03839 putative kinase; Prov 93.4 0.094 2E-06 45.8 4.1 30 31-65 3-32 (180)
365 PRK07261 topology modulation p 93.4 0.092 2E-06 45.8 4.0 22 31-52 3-24 (171)
366 PLN02348 phosphoribulokinase 93.4 0.16 3.4E-06 50.1 5.8 43 26-68 47-104 (395)
367 cd01889 SelB_euk SelB subfamil 93.4 3.5 7.6E-05 36.1 14.2 20 31-50 3-22 (192)
368 PRK08691 DNA polymerase III su 93.4 1.8 3.8E-05 46.0 13.8 36 18-53 27-63 (709)
369 TIGR00376 DNA helicase, putati 93.3 0.11 2.5E-06 54.7 5.1 35 29-63 174-208 (637)
370 cd00227 CPT Chloramphenicol (C 93.3 0.081 1.7E-06 46.1 3.4 24 29-52 3-26 (175)
371 PRK13808 adenylate kinase; Pro 93.3 1.7 3.6E-05 42.2 12.6 53 197-252 143-195 (333)
372 PRK00049 elongation factor Tu; 93.2 1.2 2.6E-05 44.2 12.1 39 225-263 100-138 (396)
373 PRK14491 putative bifunctional 93.2 0.13 2.9E-06 53.8 5.4 39 27-65 9-47 (597)
374 TIGR00150 HI0065_YjeE ATPase, 93.2 0.11 2.3E-06 43.6 3.8 43 9-53 5-47 (133)
375 PRK12338 hypothetical protein; 93.2 0.085 1.8E-06 50.7 3.6 34 28-65 4-37 (319)
376 PRK07994 DNA polymerase III su 93.2 1.3 2.8E-05 46.8 12.6 36 18-53 27-63 (647)
377 PRK12402 replication factor C 93.2 0.12 2.7E-06 49.6 4.8 48 17-64 25-74 (337)
378 PRK03731 aroL shikimate kinase 93.2 0.11 2.5E-06 44.8 4.1 32 29-65 3-34 (171)
379 COG0572 Udk Uridine kinase [Nu 93.2 0.13 2.9E-06 46.5 4.6 37 28-66 8-44 (218)
380 PRK13973 thymidylate kinase; P 93.0 0.18 3.8E-06 45.6 5.3 36 29-64 4-39 (213)
381 PRK01184 hypothetical protein; 93.0 0.12 2.6E-06 45.3 4.1 32 28-65 1-32 (184)
382 PLN02200 adenylate kinase fami 93.0 0.11 2.5E-06 47.7 4.1 26 27-52 42-67 (234)
383 PRK04195 replication factor C 93.0 0.19 4.1E-06 51.3 6.0 39 25-66 36-74 (482)
384 PRK14959 DNA polymerase III su 93.0 2.1 4.5E-05 45.0 13.6 37 17-53 26-63 (624)
385 PRK12337 2-phosphoglycerate ki 93.0 0.12 2.6E-06 52.1 4.3 37 26-66 253-289 (475)
386 PF02606 LpxK: Tetraacyldisacc 92.9 0.13 2.9E-06 49.7 4.5 38 30-67 37-76 (326)
387 KOG2749 mRNA cleavage and poly 92.9 0.22 4.8E-06 48.1 5.8 43 26-69 102-144 (415)
388 PRK00091 miaA tRNA delta(2)-is 92.8 0.12 2.6E-06 49.5 4.1 34 28-66 4-37 (307)
389 PRK03003 GTP-binding protein D 92.8 0.71 1.5E-05 47.0 9.9 22 28-49 38-59 (472)
390 PRK12422 chromosomal replicati 92.8 0.12 2.7E-06 52.1 4.4 37 29-65 142-178 (445)
391 TIGR01359 UMP_CMP_kin_fam UMP- 92.8 0.088 1.9E-06 46.0 2.9 31 30-65 1-31 (183)
392 cd01131 PilT Pilus retraction 92.8 0.22 4.7E-06 44.5 5.5 34 30-63 3-37 (198)
393 KOG3062 RNA polymerase II elon 92.8 0.71 1.5E-05 42.0 8.5 39 28-66 1-40 (281)
394 TIGR02880 cbbX_cfxQ probable R 92.8 0.13 2.9E-06 48.7 4.3 28 30-57 60-87 (284)
395 cd00046 DEXDc DEAD-like helica 92.8 0.2 4.4E-06 40.3 4.9 33 31-63 3-37 (144)
396 PRK13764 ATPase; Provisional 92.7 0.21 4.5E-06 52.2 5.9 35 29-63 258-292 (602)
397 PF02562 PhoH: PhoH-like prote 92.7 0.17 3.6E-06 45.6 4.6 36 28-63 19-55 (205)
398 PRK06851 hypothetical protein; 92.7 0.32 6.9E-06 47.8 6.8 40 26-65 28-67 (367)
399 KOG3347 Predicted nucleotide k 92.7 0.1 2.2E-06 44.4 2.9 23 28-51 8-30 (176)
400 TIGR00362 DnaA chromosomal rep 92.7 0.14 2.9E-06 51.1 4.3 37 29-65 137-175 (405)
401 PRK08154 anaerobic benzoate ca 92.6 0.14 2.9E-06 49.2 4.2 32 29-65 134-165 (309)
402 TIGR02782 TrbB_P P-type conjug 92.6 0.17 3.7E-06 48.4 4.7 36 28-63 132-169 (299)
403 PF07724 AAA_2: AAA domain (Cd 92.6 0.21 4.4E-06 43.7 4.9 39 27-65 2-41 (171)
404 TIGR03594 GTPase_EngA ribosome 92.5 1.1 2.4E-05 44.8 10.7 38 225-263 80-117 (429)
405 PRK13948 shikimate kinase; Pro 92.5 0.19 4.2E-06 44.4 4.6 34 27-65 9-42 (182)
406 PLN03127 Elongation factor Tu; 92.4 1.5 3.3E-05 44.3 11.6 39 225-263 149-187 (447)
407 KOG3220 Similar to bacterial d 92.4 0.43 9.4E-06 42.6 6.6 32 28-65 1-32 (225)
408 PF00437 T2SE: Type II/IV secr 92.3 0.16 3.5E-06 47.4 4.1 38 27-64 126-163 (270)
409 PRK14730 coaE dephospho-CoA ki 92.3 0.2 4.3E-06 44.8 4.5 32 29-65 2-33 (195)
410 TIGR02760 TraI_TIGR conjugativ 92.2 0.56 1.2E-05 55.6 9.3 46 19-65 438-483 (1960)
411 PRK14949 DNA polymerase III su 92.2 1.5 3.2E-05 47.8 11.6 36 18-53 27-63 (944)
412 PF13555 AAA_29: P-loop contai 92.2 0.21 4.6E-06 36.0 3.6 24 30-53 25-48 (62)
413 cd02022 DPCK Dephospho-coenzym 92.2 0.17 3.6E-06 44.4 3.8 30 30-65 1-30 (179)
414 CHL00181 cbbX CbbX; Provisiona 92.1 0.18 3.9E-06 47.9 4.3 27 31-57 62-88 (287)
415 PRK14528 adenylate kinase; Pro 92.1 0.2 4.3E-06 44.3 4.3 24 29-52 2-25 (186)
416 TIGR01360 aden_kin_iso1 adenyl 92.1 0.16 3.5E-06 44.2 3.7 25 28-52 3-27 (188)
417 TIGR01650 PD_CobS cobaltochela 92.0 0.24 5.2E-06 47.8 4.9 44 31-77 67-110 (327)
418 cd04166 CysN_ATPS CysN_ATPS su 91.9 5.1 0.00011 35.7 13.3 39 225-263 102-140 (208)
419 PRK00081 coaE dephospho-CoA ki 91.9 0.21 4.6E-06 44.4 4.2 32 28-65 2-33 (194)
420 PLN02165 adenylate isopentenyl 91.8 0.14 3.1E-06 49.4 3.2 40 22-66 37-76 (334)
421 PRK00149 dnaA chromosomal repl 91.8 0.19 4.1E-06 50.8 4.2 37 29-65 149-187 (450)
422 TIGR00503 prfC peptide chain r 91.7 1.4 3E-05 45.6 10.5 38 225-263 105-142 (527)
423 cd00464 SK Shikimate kinase (S 91.7 0.2 4.4E-06 42.1 3.8 30 31-65 2-31 (154)
424 PRK12736 elongation factor Tu; 91.7 2.6 5.7E-05 41.8 12.2 39 225-263 100-138 (394)
425 PRK08356 hypothetical protein; 91.7 0.28 6E-06 43.6 4.7 26 29-58 6-31 (195)
426 TIGR02881 spore_V_K stage V sp 91.7 0.19 4.1E-06 46.9 3.8 27 30-56 44-70 (261)
427 PRK07764 DNA polymerase III su 91.6 3 6.6E-05 45.4 13.3 36 18-53 26-62 (824)
428 PRK13695 putative NTPase; Prov 91.6 0.32 6.9E-06 42.2 4.9 30 31-60 3-32 (174)
429 KOG2028 ATPase related to the 91.6 0.23 4.9E-06 48.3 4.2 61 5-65 139-199 (554)
430 PRK00440 rfc replication facto 91.5 0.28 6.2E-06 46.6 5.0 47 19-65 29-75 (319)
431 cd01428 ADK Adenylate kinase ( 91.5 0.26 5.5E-06 43.3 4.3 30 31-65 2-31 (194)
432 PRK14969 DNA polymerase III su 91.5 3.9 8.6E-05 42.3 13.6 35 19-53 28-63 (527)
433 PLN02422 dephospho-CoA kinase 91.5 0.25 5.4E-06 45.4 4.3 31 29-65 2-32 (232)
434 PRK14527 adenylate kinase; Pro 91.4 0.21 4.7E-06 44.1 3.7 25 28-52 6-30 (191)
435 PF13521 AAA_28: AAA domain; P 91.4 0.19 4.2E-06 43.1 3.3 21 31-51 2-22 (163)
436 TIGR00635 ruvB Holliday juncti 91.3 0.46 1E-05 45.1 6.2 34 29-65 31-64 (305)
437 PRK14531 adenylate kinase; Pro 91.3 0.23 4.9E-06 43.7 3.7 24 29-52 3-26 (183)
438 PRK00741 prfC peptide chain re 91.3 1.8 4E-05 44.7 10.8 38 225-263 104-141 (526)
439 PRK14953 DNA polymerase III su 91.2 4.5 9.8E-05 41.4 13.5 36 18-53 27-63 (486)
440 KOG2878 Predicted kinase [Gene 91.2 0.23 4.9E-06 44.4 3.5 39 27-65 30-71 (282)
441 PTZ00141 elongation factor 1- 91.2 3.6 7.9E-05 41.6 12.8 39 225-263 110-155 (446)
442 PRK00625 shikimate kinase; Pro 91.2 0.22 4.9E-06 43.6 3.6 30 31-65 3-32 (173)
443 PF05496 RuvB_N: Holliday junc 91.2 0.21 4.6E-06 45.6 3.4 34 28-64 50-83 (233)
444 PF01268 FTHFS: Formate--tetra 91.2 0.38 8.3E-06 49.2 5.6 51 26-78 53-106 (557)
445 PRK14088 dnaA chromosomal repl 91.1 0.24 5.1E-06 50.0 4.1 37 29-65 131-169 (440)
446 TIGR02768 TraA_Ti Ti-type conj 91.1 0.3 6.4E-06 52.6 5.1 36 29-64 369-404 (744)
447 PRK12739 elongation factor G; 91.1 1.5 3.3E-05 46.8 10.5 37 226-263 99-135 (691)
448 PRK05707 DNA polymerase III su 91.1 4.5 9.7E-05 39.2 12.8 36 18-53 11-47 (328)
449 TIGR02322 phosphon_PhnN phosph 91.1 0.21 4.6E-06 43.4 3.4 27 29-55 2-28 (179)
450 PF01580 FtsK_SpoIIIE: FtsK/Sp 91.1 0.27 5.9E-06 43.8 4.1 35 31-65 41-79 (205)
451 PRK10436 hypothetical protein; 91.1 0.85 1.8E-05 46.3 8.0 43 19-62 210-252 (462)
452 PRK12735 elongation factor Tu; 91.1 3.5 7.7E-05 40.9 12.4 39 225-263 100-138 (396)
453 TIGR03015 pepcterm_ATPase puta 91.1 0.23 4.9E-06 46.1 3.7 27 27-53 42-68 (269)
454 PRK14734 coaE dephospho-CoA ki 91.0 0.33 7.1E-06 43.5 4.6 31 29-65 2-32 (200)
455 PRK14733 coaE dephospho-CoA ki 91.0 0.34 7.5E-06 43.6 4.6 34 27-65 5-38 (204)
456 PTZ00112 origin recognition co 91.0 0.53 1.1E-05 51.0 6.6 57 9-65 761-825 (1164)
457 PRK00007 elongation factor G; 91.0 1.6 3.6E-05 46.6 10.5 37 226-263 101-137 (693)
458 COG0194 Gmk Guanylate kinase [ 90.9 0.22 4.8E-06 44.0 3.2 25 28-52 4-28 (191)
459 KOG0991 Replication factor C, 90.9 0.13 2.9E-06 47.0 1.9 48 18-65 38-85 (333)
460 CHL00071 tufA elongation facto 90.9 3.4 7.4E-05 41.2 12.1 39 225-263 100-138 (409)
461 PRK10536 hypothetical protein; 90.9 0.55 1.2E-05 43.8 5.9 46 29-75 75-121 (262)
462 PRK13975 thymidylate kinase; P 90.8 0.28 6.1E-06 43.3 3.9 25 29-53 3-27 (196)
463 PRK13342 recombination factor 90.8 0.3 6.6E-06 48.8 4.5 35 18-52 26-60 (413)
464 COG0378 HypB Ni2+-binding GTPa 90.8 0.56 1.2E-05 41.7 5.6 40 28-68 13-52 (202)
465 PRK14952 DNA polymerase III su 90.7 6.4 0.00014 41.2 14.3 36 18-53 24-60 (584)
466 PRK04182 cytidylate kinase; Pr 90.7 0.24 5.1E-06 42.8 3.2 31 30-65 2-32 (180)
467 TIGR02533 type_II_gspE general 90.6 0.78 1.7E-05 46.9 7.3 44 18-62 233-276 (486)
468 PRK14490 putative bifunctional 90.6 0.43 9.3E-06 47.0 5.3 36 29-65 6-41 (369)
469 PF00308 Bac_DnaA: Bacterial d 90.5 0.39 8.4E-06 43.7 4.6 37 29-65 35-73 (219)
470 PRK05896 DNA polymerase III su 90.4 4.5 9.7E-05 42.4 12.7 37 19-55 28-65 (605)
471 PRK05057 aroK shikimate kinase 90.4 0.33 7.2E-06 42.3 3.9 32 30-66 6-37 (172)
472 TIGR03783 Bac_Flav_CT_G Bacter 90.4 0.35 7.6E-06 52.6 4.9 45 31-75 441-486 (829)
473 PRK00080 ruvB Holliday junctio 90.4 0.31 6.7E-06 47.1 4.0 35 28-65 51-85 (328)
474 PTZ00451 dephospho-CoA kinase; 90.3 0.36 7.9E-06 44.7 4.2 33 28-65 1-33 (244)
475 TIGR03263 guanyl_kin guanylate 90.2 0.25 5.5E-06 42.9 3.1 24 29-52 2-25 (180)
476 PRK02496 adk adenylate kinase; 90.2 0.33 7.1E-06 42.5 3.8 24 28-52 2-25 (184)
477 PRK14532 adenylate kinase; Pro 90.2 0.25 5.4E-06 43.4 3.0 30 31-65 3-32 (188)
478 COG0125 Tmk Thymidylate kinase 90.2 0.61 1.3E-05 42.1 5.5 37 28-64 3-39 (208)
479 PRK09554 feoB ferrous iron tra 90.2 3.4 7.4E-05 44.7 12.1 37 224-263 86-122 (772)
480 PRK05800 cobU adenosylcobinami 90.2 0.33 7.2E-06 42.4 3.7 33 30-65 3-35 (170)
481 TIGR00485 EF-Tu translation el 90.1 4.1 8.9E-05 40.4 11.9 39 225-263 100-138 (394)
482 TIGR00152 dephospho-CoA kinase 90.0 0.32 7E-06 42.8 3.6 31 30-65 1-31 (188)
483 PRK10865 protein disaggregatio 90.0 0.39 8.4E-06 52.6 4.8 41 25-65 196-243 (857)
484 COG0703 AroK Shikimate kinase 90.0 0.29 6.3E-06 42.7 3.1 42 31-77 5-52 (172)
485 PRK13507 formate--tetrahydrofo 90.0 0.43 9.3E-06 48.8 4.7 49 27-77 63-114 (587)
486 TIGR02538 type_IV_pilB type IV 89.9 1.1 2.4E-05 46.8 7.9 41 19-60 308-348 (564)
487 PF05707 Zot: Zonular occluden 89.9 0.32 7E-06 43.2 3.4 35 30-65 2-37 (193)
488 PLN03126 Elongation factor Tu; 89.9 4.9 0.00011 41.1 12.3 39 225-263 169-207 (478)
489 COG1474 CDC6 Cdc6-related prot 89.8 2.7 5.9E-05 41.3 10.2 67 9-75 23-91 (366)
490 PRK07429 phosphoribulokinase; 89.8 0.43 9.2E-06 46.2 4.4 38 27-66 7-44 (327)
491 COG2804 PulE Type II secretory 89.7 2.1 4.5E-05 43.5 9.3 43 19-62 250-292 (500)
492 PF03193 DUF258: Protein of un 89.7 0.27 5.9E-06 42.5 2.7 23 29-51 36-58 (161)
493 PRK10512 selenocysteinyl-tRNA- 89.7 15 0.00032 38.8 16.1 39 225-263 76-114 (614)
494 COG0237 CoaE Dephospho-CoA kin 89.7 0.47 1E-05 42.6 4.3 32 28-65 2-33 (201)
495 PF02492 cobW: CobW/HypB/UreG, 89.7 0.61 1.3E-05 40.8 5.0 37 30-67 2-38 (178)
496 PRK10646 ADP-binding protein; 89.6 0.44 9.5E-06 40.9 3.9 45 7-53 9-53 (153)
497 PF00580 UvrD-helicase: UvrD/R 89.6 0.78 1.7E-05 43.1 6.1 44 22-66 8-55 (315)
498 PRK13976 thymidylate kinase; P 89.6 0.55 1.2E-05 42.4 4.8 37 30-67 2-40 (209)
499 cd02026 PRK Phosphoribulokinas 89.5 0.27 5.8E-06 46.4 2.7 34 30-65 1-34 (273)
500 TIGR02173 cyt_kin_arch cytidyl 89.5 0.35 7.5E-06 41.4 3.3 31 30-65 2-32 (171)
No 1
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-58 Score=405.90 Aligned_cols=309 Identities=66% Similarity=1.047 Sum_probs=287.6
Q ss_pred hcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCce
Q 017873 13 EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY 92 (365)
Q Consensus 13 ~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~ 92 (365)
+-+.+++++++++...+++|++|||||||||+++.||..+|.-+.+||+|++||+||+++.|+.++...|+.+.|+.||.
T Consensus 4 dple~~l~nil~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLf 83 (323)
T KOG2825|consen 4 DPLEATLQNILEQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLF 83 (323)
T ss_pred CccchhHHHHhhcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhhe
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCccccc-cccc---c----cCc--cchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhch
Q 017873 93 AMEVDPSVEE-ETGS---T----EGM--DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFP 162 (365)
Q Consensus 93 ~~~~d~~~~~-~~~~---~----~~~--~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp 162 (365)
+++|||+..+ ++.+ . .+. ..++.++....||.++.+.+.++++.++..+||+|||||+|++|++++|.+|
T Consensus 84 AMEIDp~~e~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP 163 (323)
T KOG2825|consen 84 AMEIDPNVEMGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFP 163 (323)
T ss_pred eeecCCchhhhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccc
Confidence 9999999776 2211 1 112 3456777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHH
Q 017873 163 STLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242 (365)
Q Consensus 163 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~ 242 (365)
..+...+.++.+++.+++|+++++.+++|.+ +.+.+++...++++++.++++++.++||+.|+|++|+.|+.+|+.||+
T Consensus 164 ~~lek~lgKl~~l~~k~~pm~sq~~sm~g~~-~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEte 242 (323)
T KOG2825|consen 164 TTLEKGLGKLLSLKNKIGPMLSQMGSMFGME-DAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETE 242 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHH
Confidence 9999999999999999999999999999863 467889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhhc
Q 017873 243 RLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFV 322 (365)
Q Consensus 243 ~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l~ 322 (365)
|+++.|.++++++..||+|+.++|+.+..|+.|.+|+++|.+|+.+|.+.|.+.++.++|+.+.|++|.++|+.+++-++
T Consensus 243 RliqeL~k~~idthnIIVNQLL~~~~~~~ck~C~ar~k~Q~kyLdqi~elyedfhv~klPl~~~EvrG~~al~~fse~l~ 322 (323)
T KOG2825|consen 243 RLIQELAKQGIDTHNIIVNQLLFPDNEVSCKKCAARRKMQSKYLDQIEELYEDFHVVKLPLLPMEVRGVEALNFFSEILL 322 (323)
T ss_pred HHHHHHHhcCCcccceeeeeccCCCCccchHHHHHHHHHHHHHhhhHHHHHhhcceeecccchhhhcCHHHHHHHHHHhc
Confidence 99999999999999999999998886578999999999999999999999999999999999999999999999998764
No 2
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=100.00 E-value=4.2e-55 Score=416.20 Aligned_cols=293 Identities=39% Similarity=0.667 Sum_probs=250.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-cc--
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET-- 104 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~-- 104 (365)
|+++|++|||||||||+|+++|.++|++|+||||+++||+|+++++||.+.+.+|+.+.+.+||++.++|+...+ ++
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~ 80 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWE 80 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999998999999999998877 21
Q ss_pred --ccc-------cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHH
Q 017873 105 --GST-------EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL 175 (365)
Q Consensus 105 --~~~-------~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~ 175 (365)
... ...+.+...+....||++|...+.++.+.++..+||+|||||||++|+++++.+|+.+.||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l~~l~~~ 160 (305)
T PF02374_consen 81 EVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLRWWLDRLLKL 160 (305)
T ss_dssp HHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHHHHHHHHHHH
Confidence 111 11223445566678999999999999999998899999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCc
Q 017873 176 KNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDT 255 (365)
Q Consensus 176 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v 255 (365)
++++.++.+++.+ .+.+ ....+.+++.+.++++++++++++|+||+.|+|++|++|+.+++.||+|+++.|+.+|+++
T Consensus 161 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L~~~gi~v 238 (305)
T PF02374_consen 161 RRKIRSLARPLSG-LGLG-AVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTELKLYGIPV 238 (305)
T ss_dssp HHCHHHHHHHHCH-SHCC-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EE
T ss_pred HHhhcchhhhhhc-cccc-ccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCcc
Confidence 9999888777654 2211 2344578899999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhhcC
Q 017873 256 HNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVT 323 (365)
Q Consensus 256 ~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l~~ 323 (365)
.++|+||+ .|++...|++|+.|+..|+++++++.+.|++.+++.+|+++.||.|++.|+++++.||.
T Consensus 239 ~~vVvNrv-lp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~~vp~~~~ev~G~~~L~~~~~~L~~ 305 (305)
T PF02374_consen 239 DAVVVNRV-LPEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVVKVPLLPEEVRGLDALEALADHLYK 305 (305)
T ss_dssp EEEEEEEE--TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE--SS-S-SHHHHHHHHHHHH-
T ss_pred CeEEEEcc-ccccccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCCCCCHHHHHHHHHHhcC
Confidence 99999999 55545569999999999999999999999999999999999999999999999999873
No 3
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-48 Score=371.12 Aligned_cols=298 Identities=38% Similarity=0.622 Sum_probs=263.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-cc-
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET- 104 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~- 104 (365)
+++|+|++|||||||||+||++|.++|+.|+|||+|++||+||+++.|+.+.+.++..+. +||++.++|+.... ++
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~--~nL~a~eiD~~~~l~ey~ 78 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG--PNLDALELDPEKALEEYW 78 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcC--CCCceeeecHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999999888888886 99999999999887 21
Q ss_pred ----------ccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHH
Q 017873 105 ----------GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMS 174 (365)
Q Consensus 105 ----------~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~ 174 (365)
....++.....+.....||++|.+.+.++.+.+.+.+||+|||||||++|++++|.+|+.+.||++++++
T Consensus 79 ~~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~~~~~~~~~ 158 (322)
T COG0003 79 DEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLFK 158 (322)
T ss_pred HHHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHHHHHHhhhh
Confidence 1122334556677788999999999999999999989999999999999999999999999999999986
Q ss_pred -HHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCC
Q 017873 175 -LKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI 253 (365)
Q Consensus 175 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi 253 (365)
.++++...+..+..+.+.. .+.+.+++.++++++++..++..+.||..|.+++|++|+.+++.++.+++..|.++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i 236 (322)
T COG0003 159 PRRKRMVKALKSLSTAAGSP--LPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGI 236 (322)
T ss_pred hHHHHHHHhhhhcccccCCc--CcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHHHcCC
Confidence 5555544444444444443 3378899999999999999999999999999999999999999999999999999999
Q ss_pred CcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhhcCCCCCCCC
Q 017873 254 DTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTS 330 (365)
Q Consensus 254 ~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l~~~~~~~~~ 330 (365)
++.++++|+++ |++ ..+++|+.|...|++++.++.+.|.+..+..+|+...++.|.+.+.++++.+++...|.+.
T Consensus 237 ~v~~vi~n~~~-p~~-~~~~~~~~~~~~q~~~l~~~~~~f~~~~v~~vp~~~ee~~g~~~l~~l~~~l~~~~~~~~~ 311 (322)
T COG0003 237 PVDAVIVNKIL-PDE-ADQPFLEARRKIQQKYLKELEETFSDLAVVKVPLLAEEPVGLEALEKLGDLLYGDESPAPV 311 (322)
T ss_pred chheeeeeccc-ccc-cccHHHHHHHHHHHHHHHHHHHhhcccceEEecccccccccHHHHHHHHHhccCCCCcccc
Confidence 99999999995 442 4566999999999999999999999999999999999999999999999999997777653
No 4
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=100.00 E-value=3.9e-42 Score=320.19 Aligned_cols=241 Identities=48% Similarity=0.798 Sum_probs=207.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-ccc--
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ETG-- 105 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~~-- 105 (365)
+++|++||||+||||+|+|+|.++|+.|+||||||+|++++++++|+.+.+..+....+.+|+++.++|+...+ ++.
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~ 80 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE 80 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999986666666667899999999988766 110
Q ss_pred ------c---ccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHH
Q 017873 106 ------S---TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK 176 (365)
Q Consensus 106 ------~---~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~ 176 (365)
. ...+..+...... .||+.+.+.+.++.+.+++.+||+|||||||++++++++.+|+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~--------- 150 (254)
T cd00550 81 VLEPIEANLLLEMLKGILEEELE-SPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSW--------- 150 (254)
T ss_pred HHHHHHhhccchhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHH---------
Confidence 0 0111122222233 39999999999999999877899999999999999999999998754
Q ss_pred HhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcC
Q 017873 177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTH 256 (365)
Q Consensus 177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~ 256 (365)
+.+.+.||..|.+++|++|+.+++.+++++++.|+.+|+++.
T Consensus 151 --------------------------------------~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~ 192 (254)
T cd00550 151 --------------------------------------AREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVD 192 (254)
T ss_pred --------------------------------------HHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCC
Confidence 223577898999999999999999999999999999999999
Q ss_pred eEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHH
Q 017873 257 NIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFS 318 (365)
Q Consensus 257 ~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~ 318 (365)
|+|+|++ .++....|++|+.|...|+++++++.+.|++.+++++|+++.||.|+++|+.|+
T Consensus 193 gvV~N~v-~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~~e~~g~~~L~~~~ 253 (254)
T cd00550 193 AVIVNQL-LPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLPEEVVGLEKLEQFA 253 (254)
T ss_pred EEEEecC-cccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCCCCCCCHHHHHHHh
Confidence 9999999 454334699999999999999999999999999999999999999999999886
No 5
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=100.00 E-value=1.4e-40 Score=314.41 Aligned_cols=270 Identities=41% Similarity=0.655 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-cccc--------ccCccch-
Q 017873 44 CSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ETGS--------TEGMDSL- 113 (365)
Q Consensus 44 ~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~~~--------~~~~~~~- 113 (365)
+|+++|..+|+.|+|||+||+||+++++++||.+.+..|+.+.+.+|+++.++|+...+ ++.. .......
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~Dp~~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVSTDPAHSLSDVFEQEIGHTPTKVTGVENLSAVEIDPQAALEEYRAKLVEQIKGNLPDGDML 80 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCCCHHHHhCCccCCCCeeccCCCCceEEEcCHHHHHHHHHHHHHHHHhhhccccccH
Confidence 58999999999999999999999999999999999989998888899999999998877 2111 0111111
Q ss_pred --hHHhhhcCCCHHHHHHHHHHHHHHHh--CCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 017873 114 --FSELANAIPGIDEAMSFAEMLKLVQT--MDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL 189 (365)
Q Consensus 114 --~~~~~~~~pg~~~~~~l~~l~~~l~~--~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~ 189 (365)
..+.....||++|.+.+.++.+.+.+ .+||+|||||||++|++++|.+|+.+.||++++++++++++++.+++
T Consensus 81 ~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~~yD~iVvDtaPtghtLrlL~lP~~l~~~l~~~~~~~~~~~~~~~~~--- 157 (284)
T TIGR00345 81 GDQLEGAALSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTAPTGHTLRLLQLPEVLSSFLEKFIKIRSKLGPMLKLF--- 157 (284)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHhhccCCEEEECCCChHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 12224467999999999999999876 68999999999999999999999999999999999999987766544
Q ss_pred hCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCc
Q 017873 190 FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDED 269 (365)
Q Consensus 190 ~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~ 269 (365)
.|.+ +.+++++.+.++++.++++.++|+||+.|+|++|++|+.+++.++.++++.|+..|+++.++|+|++. +. +
T Consensus 158 ~~~~---~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~-~~-~ 232 (284)
T TIGR00345 158 MGAG---ESDEALEKLEELKEQIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVL-PE-N 232 (284)
T ss_pred cCCC---cchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCc-CC-C
Confidence 3332 44889999999999999999999999999999999999999999999999999999999999999994 44 2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhh
Q 017873 270 VESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHF 321 (365)
Q Consensus 270 ~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l 321 (365)
..|++|..|...|.++++++.+.|.+.+++.+|+++.||.|+++|+.+++.|
T Consensus 233 ~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~~vp~~~~e~~G~~~L~~l~~~~ 284 (284)
T TIGR00345 233 AQDEFCQARWELQQKYLKEIPEKFADLPVAEVPLQKEEMVGLEALKRLSKTL 284 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCHHHHHHHHhhC
Confidence 4689999999999999999999999999999999999999999999998754
No 6
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.96 E-value=8.1e-28 Score=218.97 Aligned_cols=207 Identities=45% Similarity=0.660 Sum_probs=151.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh--------hhHhhcccCCCceeecCcCCceeeecCcccc
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL--------SDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE 101 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l--------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 101 (365)
+++++||||+||||+++++|.++|+.|+||++||+|+++++ +++++.... .. ..+.+.........
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~----~~--~~~~~~~~~~~~~~ 74 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDP----EI--APNLYREEVDATRR 74 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCCh----HH--HHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999854 333332000 00 00011111000000
Q ss_pred ccccccc-CccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhh
Q 017873 102 EETGSTE-GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG 180 (365)
Q Consensus 102 ~~~~~~~-~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~ 180 (365)
. .... .............|+..+.+.+.++.+.+++.+||||||||||+++.++++
T Consensus 75 ~--~~~~~~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l--------------------- 131 (217)
T cd02035 75 V--ERAWGGEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLL--------------------- 131 (217)
T ss_pred h--hhcccchhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHH---------------------
Confidence 0 0000 001111223447799999999999999998855999999999987766654
Q ss_pred hhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEE
Q 017873 181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIII 260 (365)
Q Consensus 181 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVv 260 (365)
+...+.|+..+.+++|++|+.++..++.++++.++..|+++.++|+
T Consensus 132 ----------------------------------~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVl 177 (217)
T cd02035 132 ----------------------------------VRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVV 177 (217)
T ss_pred ----------------------------------HHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEE
Confidence 0113556666899999999999999999999999999999999999
Q ss_pred cCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q 017873 261 NQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITK 300 (365)
Q Consensus 261 N~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~ 300 (365)
|++. +.....|++|..+...|+.++.++.+.|++.|++.
T Consensus 178 N~~~-~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~ 216 (217)
T cd02035 178 NRVL-PAEVDDDPFLAARRQIQQKYLAEIEELFDDLPIVP 216 (217)
T ss_pred eCCc-CcccCCCHHHHHHHHHHHHHHHHHHHHcCCCceec
Confidence 9994 44233688999999999999999999998877654
No 7
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.8e-25 Score=201.75 Aligned_cols=171 Identities=21% Similarity=0.225 Sum_probs=129.2
Q ss_pred hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcccCC--------CceeecCcCCce
Q 017873 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTK--------TPTLVNGFSNLY 92 (365)
Q Consensus 22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~~~~--------~~~~~~~~~~l~ 92 (365)
.+..-.++|++.||||||||||+|+|||++||+.|++|.++|+|- .+|+..++|.+... .|+.. -.|+.
T Consensus 42 ~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~--~~~l~ 119 (300)
T KOG3022|consen 42 NLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVV--NKNLK 119 (300)
T ss_pred cccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeee--cCCeE
Confidence 444556789999999999999999999999999999999999994 59999999976321 11111 12333
Q ss_pred eeecCcccccccccccCccchhH--HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHH
Q 017873 93 AMEVDPSVEEETGSTEGMDSLFS--ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLD 170 (365)
Q Consensus 93 ~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~ 170 (365)
++.+ ..+.. +....|.|.....++.++++...+++.||+||||||+.+...+-
T Consensus 120 ~mS~--------------gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls----------- 174 (300)
T KOG3022|consen 120 LMSM--------------GFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLS----------- 174 (300)
T ss_pred EEEe--------------eeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhh-----------
Confidence 2221 11111 12335678887888999999999989999999999987653322
Q ss_pred HHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHh
Q 017873 171 KMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK 250 (365)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~ 250 (365)
+. . .+ +..++.++||||...++.++.+-+..+++
T Consensus 175 ---------------~~---~--------------------------~~--~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K 208 (300)
T KOG3022|consen 175 ---------------LV---Q--------------------------FL--RESDGAVIVTTPQEVALQDVRKEIDFCRK 208 (300)
T ss_pred ---------------ee---e--------------------------cc--cccCceEEEeCchhhhhHHHHhhhhhhhh
Confidence 00 0 01 11267899999999999999999999999
Q ss_pred CCCCcCeEEEcCccC
Q 017873 251 FEIDTHNIIINQVLY 265 (365)
Q Consensus 251 ~gi~v~~vVvN~~~~ 265 (365)
.++|+.|+|.||..+
T Consensus 209 ~~I~ilGvVENMs~f 223 (300)
T KOG3022|consen 209 AGIPILGVVENMSGF 223 (300)
T ss_pred cCCceEEEEeccccc
Confidence 999999999999964
No 8
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.92 E-value=2e-24 Score=188.98 Aligned_cols=167 Identities=18% Similarity=0.163 Sum_probs=119.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccccccccc
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE 108 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 108 (365)
.|+|+|+||||||||+|+|||.++|+.|+||+|||+|++++....+...
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~------------------------------- 49 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRG------------------------------- 49 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhC-------------------------------
Confidence 3789999999999999999999999999999999999997532221000
Q ss_pred CccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 017873 109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188 (365)
Q Consensus 109 ~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~ 188 (365)
+... ..+..+++.+...+||||||||||+.+...+.
T Consensus 50 -------------~~~~--~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~----------------------------- 85 (169)
T cd02037 50 -------------PMKM--GAIKQFLTDVDWGELDYLVIDMPPGTGDEHLT----------------------------- 85 (169)
T ss_pred -------------cchH--HHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHH-----------------------------
Confidence 0000 12334444444237999999999975432211
Q ss_pred hhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCC
Q 017873 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDE 268 (365)
Q Consensus 189 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~ 268 (365)
.+.-...+.+++|++|+..++.++.++++.+++.++++.|+|+||+. +.
T Consensus 86 -----------------------------~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~-~~- 134 (169)
T cd02037 86 -----------------------------LAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSY-FV- 134 (169)
T ss_pred -----------------------------HHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCc-cc-
Confidence 00001135899999999999999999999999999999999999994 21
Q ss_pred ccchHHHHHHHHH-HHHHHHHHHhhcCCCcEEEecCC
Q 017873 269 DVESKLLRARMRM-QQKYLDQFYMLYDDFHITKLPLL 304 (365)
Q Consensus 269 ~~~~~~~~~~~~~-q~~~l~~i~~~~~~~~i~~vp~~ 304 (365)
|..|+.+... +.+.++++.+.+....+..+|+-
T Consensus 135 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ 168 (169)
T cd02037 135 ---CPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLD 168 (169)
T ss_pred ---CCCCCCcccccCCccHHHHHHHcCCCEEEeccCC
Confidence 2234443333 45677888888877677777864
No 9
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.91 E-value=2.1e-23 Score=203.57 Aligned_cols=172 Identities=20% Similarity=0.243 Sum_probs=108.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC-ChhhHhhcccCCCceeecCcCCceeeecCccccccc
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET 104 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 104 (365)
..+.|+|+||||||||||+|+|||.+||+.|+||+|||+|+++ +++.+||..... +... .+....++.... +
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~-~~~~---~~~~i~p~~~~g-~-- 178 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQR-PTSP---DGTHMAPIMAHG-L-- 178 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccC-Cccc---CCceeeeeeccC-c--
Confidence 3466789999999999999999999999999999999999984 466788864211 1100 111111110000 0
Q ss_pred ccccCccchhH-HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhH
Q 017873 105 GSTEGMDSLFS-ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183 (365)
Q Consensus 105 ~~~~~~~~~~~-~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~ 183 (365)
....+..+.. .-...+.|......+.+++....+.+||||||||||+.+...+.
T Consensus 179 -~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~l~------------------------ 233 (369)
T PRK11670 179 -ATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLT------------------------ 233 (369)
T ss_pred -ccccHHHhcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchHHHH------------------------
Confidence 0000000000 00011223222234455553222337999999999976542211
Q ss_pred HHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 184 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.. ++ ..+.+++|++|+..++.++.+.++.+.+.++++.|+|+|++
T Consensus 234 --~~~-----------------------------l~---aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~ 279 (369)
T PRK11670 234 --LAQ-----------------------------NI---PVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMS 279 (369)
T ss_pred --Hhh-----------------------------hc---cCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCC
Confidence 000 00 13578999999999999999999999999999999999998
No 10
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.91 E-value=2e-23 Score=195.18 Aligned_cols=192 Identities=17% Similarity=0.171 Sum_probs=132.7
Q ss_pred hhhhhhhhcchhhHHhhhcC---CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcccCC-
Q 017873 6 QDQDQELEIPEGSVRNILEQ---DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTK- 80 (365)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~---~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~~~~- 80 (365)
....+.++.++.+++..... ..+.|+++|+|||+||||+|+|||.++|+.|+||+++|+|- .++++.+|+.+...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g 112 (265)
T COG0489 33 STASEALRALRTNLKFAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPG 112 (265)
T ss_pred chhhhhhhhhhcchhhhhccccccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCC
Confidence 34556677777754433333 46678899999999999999999999999999999999995 59999999985321
Q ss_pred CceeecCcCCceeeecCcccccccccccCccchhH-HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhh
Q 017873 81 TPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFS-ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL 159 (365)
Q Consensus 81 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l 159 (365)
.+.... |-...++.... ....++-++. .....+.++.....+.+++..+.+..||||||||||.....++.
T Consensus 113 ~~~~~~---g~~~~~~~~~~-----~~~~lsi~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~ 184 (265)
T COG0489 113 LTELLA---GEALEPVIQHD-----GIKVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADAT 184 (265)
T ss_pred cccccC---CCccccceecC-----ccceEEEEecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHH
Confidence 111111 10000000000 0011111110 11123446666678999999999866999999999977654433
Q ss_pred hchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHH
Q 017873 160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY 239 (365)
Q Consensus 160 ~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~ 239 (365)
. + . .+. .++++|++|+.++..
T Consensus 185 i-------------------------~----~--------------------------~~~----~g~viVt~p~~~~~~ 205 (265)
T COG0489 185 V-------------------------L----Q--------------------------RIP----DGVVIVTTPGKTALE 205 (265)
T ss_pred H-------------------------H----h--------------------------ccC----CeEEEEeCCccchHH
Confidence 0 0 0 122 389999999999999
Q ss_pred HHHHHHHHHHhCCCCcCeEEEcCcc
Q 017873 240 ETERLVQELTKFEIDTHNIIINQVL 264 (365)
Q Consensus 240 et~~~~~~L~~~gi~v~~vVvN~~~ 264 (365)
+++++++.+++.++++.|||.|+..
T Consensus 206 ~v~ka~~~~~~~~~~vlGvv~Nm~~ 230 (265)
T COG0489 206 DVKKAIDMLEKAGIPVLGVVENMSY 230 (265)
T ss_pred HHHHHHHHHHhcCCceEEEEecCcc
Confidence 9999999999999999999999994
No 11
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.90 E-value=3.7e-23 Score=194.71 Aligned_cols=188 Identities=17% Similarity=0.184 Sum_probs=124.9
Q ss_pred hhhhhhhhcchhhHHhhh-cCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873 6 QDQDQELEIPEGSVRNIL-EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT 83 (365)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~-~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~ 83 (365)
+-..|+++.++.+|.... ++..+.|+|+|+|||+||||+|.|||.++|+.|+||++||+|++ ++++..|+.+... .
T Consensus 81 ~~~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~--g 158 (274)
T TIGR03029 81 SPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQR--G 158 (274)
T ss_pred CHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCC--C
Confidence 457799999999998654 45567788999999999999999999999999999999999976 6667777653211 1
Q ss_pred eecCcCCceeeecCccccc-ccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhh
Q 017873 84 LVNGFSNLYAMEVDPSVEE-ETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL 159 (365)
Q Consensus 84 ~~~~~~~l~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l 159 (365)
+..+...+ .+...+ ......++..+.... ..+...+. ..+..+++.++. .||||||||||.....+..
T Consensus 159 ----l~~~l~~~-~~~~~i~~~~~~~~l~~lp~g~--~~~~~~~~~~~~~~~~~l~~l~~-~yD~ViiD~pp~~~~~d~~ 230 (274)
T TIGR03029 159 ----LSDILAGR-SDLEVITHIPALENLSVLPAGA--IPPNPQELLARPAFTDLLNKVMG-DYDVVIVDTPSAEHSSDAQ 230 (274)
T ss_pred ----HHHHhCCC-CCHHHeeecCCCCCEEEEeCcC--CCCCHHHHhCcHHHHHHHHHHHh-cCCEEEEeCCCcccccHHH
Confidence 11110000 000000 000011111111110 01111111 246777777776 7999999999964321111
Q ss_pred hchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHH
Q 017873 160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY 239 (365)
Q Consensus 160 ~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~ 239 (365)
.+. .. .+.+++|++++.++..
T Consensus 231 -------------------------~~~------------------------------~~----~d~vilV~~~~~t~~~ 251 (274)
T TIGR03029 231 -------------------------IVA------------------------------TR----ARGTLIVSRVNETRLH 251 (274)
T ss_pred -------------------------HHH------------------------------Hh----CCeEEEEEECCCCCHH
Confidence 000 01 2478999999999999
Q ss_pred HHHHHHHHHHhCCCCcCeEEEcC
Q 017873 240 ETERLVQELTKFEIDTHNIIINQ 262 (365)
Q Consensus 240 et~~~~~~L~~~gi~v~~vVvN~ 262 (365)
++.++++.|+..|.++.|+|+|+
T Consensus 252 ~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 252 ELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCC
Confidence 99999999999999999999996
No 12
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.88 E-value=2.1e-22 Score=181.46 Aligned_cols=187 Identities=16% Similarity=0.197 Sum_probs=120.1
Q ss_pred hhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC-ChhhHhhcccCCCceeecCc
Q 017873 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKTPTLVNGF 88 (365)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~-~l~~~~~~~~~~~~~~~~~~ 88 (365)
|.++.++.+|...- .+++.|.|+|+|||+||||++++||.++|+.|+||++||+|++. +++..|+..... + ++
T Consensus 1 ~~~~~l~~~l~~~~-~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~-~----~l 74 (204)
T TIGR01007 1 EYYNAIRTNIQFSG-AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKI-T----GL 74 (204)
T ss_pred ChHHHHHHHHhhhc-CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCC-C----CH
Confidence 57889999998554 34777889999999999999999999999999999999999874 455566543210 0 11
Q ss_pred CCceeeecCcccccccccccCccchhHHhhhcCCCHHH---HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHH
Q 017873 89 SNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDE---AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTL 165 (365)
Q Consensus 89 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l 165 (365)
..+.....+....+......++..+.... ..+.... ...+..+++.+++ +||||||||||........
T Consensus 75 ~~~l~~~~~l~~~i~~~~~~~l~~l~~g~--~~~~~~~~l~~~~l~~~l~~l~~-~yD~ViiD~pp~~~~~~~~------ 145 (204)
T TIGR01007 75 TNFLSGTTDLSDAICDTNIENLFVITSGP--VPPNPTELLQSSNFKTLIETLRK-YFDYIIIDTPPIGTVTDAA------ 145 (204)
T ss_pred HHHhcCCCCHHHhcccCCCCCEEEEeCCC--CCCCHHHHhCcHHHHHHHHHHHh-cCCEEEEeCCCccccchHH------
Confidence 11110011111111000001111111000 0111111 1346677777776 7999999999933211100
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHH
Q 017873 166 EKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV 245 (365)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~ 245 (365)
.+. -. .+.+++|+.|+.++..++.+++
T Consensus 146 -------------------~~~------------------------------~~----~D~vilV~~~~~~~~~~~~~~~ 172 (204)
T TIGR01007 146 -------------------IIA------------------------------RA----CDASILVTDAGEIKKRDVQKAK 172 (204)
T ss_pred -------------------HHH------------------------------Hh----CCeEEEEEECCCCCHHHHHHHH
Confidence 000 01 2478999999999999999999
Q ss_pred HHHHhCCCCcCeEEEcCcc
Q 017873 246 QELTKFEIDTHNIIINQVL 264 (365)
Q Consensus 246 ~~L~~~gi~v~~vVvN~~~ 264 (365)
+.++..|+++.|+|+|++.
T Consensus 173 ~~l~~~~~~~~gvVlN~~~ 191 (204)
T TIGR01007 173 EQLEQTGSNFLGVVLNKVD 191 (204)
T ss_pred HHHHhCCCCEEEEEEeCcc
Confidence 9999999999999999993
No 13
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.87 E-value=4e-21 Score=174.27 Aligned_cols=199 Identities=20% Similarity=0.253 Sum_probs=111.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHh-hcccCCCceeecCcCCce-eeecCccccccccc
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF-QQRFTKTPTLVNGFSNLY-AMEVDPSVEEETGS 106 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~-~~~~~~~~~~~~~~~~l~-~~~~d~~~~~~~~~ 106 (365)
+|+++ |||||||||+|+|||.+||++|+|||+||+||+.+.+..+ +.+... .....+.+.. ....+....+ ...
T Consensus 2 ~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (212)
T cd02117 2 QIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPT--TILELAAEDGHVEDLELEDVI-FEG 77 (212)
T ss_pred EEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCC--CHHHHHhhhCCcCCcChhHee-EeC
Confidence 45666 7999999999999999999999999999999998877665 322110 0000000000 0000111111 001
Q ss_pred ccCccchhH-----HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhh
Q 017873 107 TEGMDSLFS-----ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181 (365)
Q Consensus 107 ~~~~~~~~~-----~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~ 181 (365)
..+++-+.. ......++......+.+.+..+.+ +||||||||++....-.++
T Consensus 78 ~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~yD~ilID~~g~~~~~~~~---------------------- 134 (212)
T cd02117 78 FGGVKCVESGGPEPGVGCAGRGVITAVNLLEKEGFAED-DLDVVLYDVLGDVVCGGFA---------------------- 134 (212)
T ss_pred CCCcEEEeCCCCCCCcccCCcchhhHHHHHHhcccccc-CCCEEEEecCCCceecccc----------------------
Confidence 112111110 001111222111112223444444 7999999997643210110
Q ss_pred hHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC----CCCcCe
Q 017873 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EIDTHN 257 (365)
Q Consensus 182 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~----gi~v~~ 257 (365)
.++ .....+.+++|++|+..++..+.++++.+++. ++++.+
T Consensus 135 --~~l---------------------------------~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~g 179 (212)
T cd02117 135 --MPI---------------------------------REGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGG 179 (212)
T ss_pred --ccc---------------------------------ccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEE
Confidence 000 00113578999999999999998888888764 677889
Q ss_pred EEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecC
Q 017873 258 IIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPL 303 (365)
Q Consensus 258 vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~ 303 (365)
+|+|++. +. .+...++++.+.|....+..+|.
T Consensus 180 vv~N~~~-~~-------------~~~~~~~~~~~~~~~~vl~~IP~ 211 (212)
T cd02117 180 LICNSRN-TD-------------RETELIDAFAERLGTQVIHFVPR 211 (212)
T ss_pred EEEeCCC-Cc-------------cHHHHHHHHHHHcCCCEEEecCC
Confidence 9999993 21 23335677777776555555664
No 14
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.87 E-value=2.4e-20 Score=173.37 Aligned_cols=166 Identities=25% Similarity=0.288 Sum_probs=112.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHH-HHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccccc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSIL-SILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET 104 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~l-A~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 104 (365)
++.|.|+||||||||||+|+|+ |..++..|++|++||+|.. +|++..||..... +. +.++...+.+.++.+ +
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~--~~---l~dvL~~~~~~~Di~-~ 75 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKP--TT---LHDVLAGEASIEDII-Y 75 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCc--cc---HHHHHhCCCCHhHee-e
Confidence 4678899999999999999999 5555567788899999987 8899999976421 10 111111122222211 1
Q ss_pred ccc-cCccchhHHhhhcCCCHHHH-----HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHh
Q 017873 105 GST-EGMDSLFSELANAIPGIDEA-----MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNK 178 (365)
Q Consensus 105 ~~~-~~~~~~~~~~~~~~pg~~~~-----~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~ 178 (365)
..+ .++..+. ...+..+. ..+..++..+.. .|||||+||||+.+.-.+.
T Consensus 76 ~~~~~gl~vip-----g~~~~~~~~~~~~~~~~~~~~~l~~-~~D~iliD~~aGl~~~~~~------------------- 130 (262)
T COG0455 76 ETPQDGLYVLP-----GGSGLEDLAKLDPEDLEDVIKELEE-LYDYILIDTGAGLSRDTLS------------------- 130 (262)
T ss_pred ecCcCCEEEee-----CCCChHHHhhcCHHHHHHHHHHHHh-cCCEEEEeCCCCccHHHHH-------------------
Confidence 111 2222111 11222222 245567777777 5899999999977632111
Q ss_pred hhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCe-
Q 017873 179 FGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHN- 257 (365)
Q Consensus 179 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~- 257 (365)
. ++. .+.+++|++|+..++.++..+++.+...|++..+
T Consensus 131 ------~--------------------------------~~~---sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~ 169 (262)
T COG0455 131 ------F--------------------------------ILS---SDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGR 169 (262)
T ss_pred ------H--------------------------------HHh---cCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccc
Confidence 0 111 1578999999999999999999999999999988
Q ss_pred -EEEcCcc
Q 017873 258 -IIINQVL 264 (365)
Q Consensus 258 -vVvN~~~ 264 (365)
+|+|++.
T Consensus 170 ~vV~N~v~ 177 (262)
T COG0455 170 RVVLNRVR 177 (262)
T ss_pred eEEEEecc
Confidence 9999994
No 15
>CHL00175 minD septum-site determining protein; Validated
Probab=99.87 E-value=3.2e-21 Score=182.15 Aligned_cols=172 Identities=19% Similarity=0.178 Sum_probs=110.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccc-c
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-E 103 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~ 103 (365)
.++.|+|+|+||||||||+|+|||.+|++.|+||++||+|++ ++++.+||.......... ++..........+ .
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~----d~l~~~~~l~~~~~~ 89 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAM----DVLEGECRLDQALIR 89 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHH----HHHcCCCChhhheee
Confidence 345788999999999999999999999999999999999997 889988886521111100 0000000000000 0
Q ss_pred cccccCccchhHH--hhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhh
Q 017873 104 TGSTEGMDSLFSE--LANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181 (365)
Q Consensus 104 ~~~~~~~~~~~~~--~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~ 181 (365)
.....++..+... ....... ...+..+++.++..+||||||||||+.+.....
T Consensus 90 ~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~---------------------- 144 (281)
T CHL00175 90 DKRWKNLSLLAISKNRQRYNVT---RKNMNMLVDSLKNRGYDYILIDCPAGIDVGFIN---------------------- 144 (281)
T ss_pred cCCCCCeEEEeCCCchhhccCC---HHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHH----------------------
Confidence 0000111111000 0000001 124666777776546999999999976532211
Q ss_pred hHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEc
Q 017873 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN 261 (365)
Q Consensus 182 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN 261 (365)
. +. ..+.+++|++|+..++..+.++++.+.+.+.+..++|+|
T Consensus 145 ---~---------------------------------l~--~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN 186 (281)
T CHL00175 145 ---A---------------------------------IA--PAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVN 186 (281)
T ss_pred ---H---------------------------------HH--hcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 0 00 024789999999999999999999999999888899999
Q ss_pred Ccc
Q 017873 262 QVL 264 (365)
Q Consensus 262 ~~~ 264 (365)
++.
T Consensus 187 ~~~ 189 (281)
T CHL00175 187 RVR 189 (281)
T ss_pred ccC
Confidence 993
No 16
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.86 E-value=1.6e-21 Score=176.30 Aligned_cols=185 Identities=16% Similarity=0.144 Sum_probs=119.4
Q ss_pred hhhhhhhcchhhHHhhh----c-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC-CChhhHhhcccC
Q 017873 7 DQDQELEIPEGSVRNIL----E-QDSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA-HNLSDAFQQRFT 79 (365)
Q Consensus 7 ~~~~~~~~~~~~l~~~~----~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~-~~l~~~~~~~~~ 79 (365)
...++++.|+.+|.... . +.++.|.|+|+|||+||||+|+|||.+||+ .|+||||||+|++ ++++..|+.+..
T Consensus 10 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~ 89 (207)
T TIGR03018 10 RIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAE 89 (207)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCC
Confidence 45788999999988644 3 345667899999999999999999999996 6999999999988 478877876522
Q ss_pred CCceeecCcCCceeeec-CcccccccccccCccchhHHhhhcCCCHHH---HHHHHHHHHHHHhCCC--cEEEEcCCCCh
Q 017873 80 KTPTLVNGFSNLYAMEV-DPSVEEETGSTEGMDSLFSELANAIPGIDE---AMSFAEMLKLVQTMDY--SCIVFDTAPTG 153 (365)
Q Consensus 80 ~~~~~~~~~~~l~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~l~~l~~~l~~~~y--D~IiiDtpp~~ 153 (365)
. . +..+..... +....+.-....++..+... .......+ ...+..+++.+++ +| |||||||||..
T Consensus 90 ~--~----l~~~l~~~~~~l~~~i~~~~~~~l~vl~~g--~~~~~~~~~~~~~~l~~~l~~l~~-~y~~D~IiiD~pp~~ 160 (207)
T TIGR03018 90 P--G----LSDCLLDPVLDLADVLVPTNIGRLSLLPAG--RRHPNPTELLASQRMRSLLHELAR-RYPDRIIIIDTPPLL 160 (207)
T ss_pred C--C----HHHHHcCCCCCHHHHhccCCCCCEEEEeCC--CCCCCHHHHhCcHHHHHHHHHHHh-hCCCCEEEEECCCCc
Confidence 1 0 000000000 00111100001111111100 00111111 1356777777776 57 99999999976
Q ss_pred hHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecC
Q 017873 154 HTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIP 233 (365)
Q Consensus 154 ~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p 233 (365)
..-... .+. .. .+.+++|+.+
T Consensus 161 ~~~~~~-------------------------~l~------------------------------~~----aD~viiV~~~ 181 (207)
T TIGR03018 161 VFSEAR-------------------------ALA------------------------------RL----VGQIVLVVEE 181 (207)
T ss_pred chhHHH-------------------------HHH------------------------------Hh----CCEEEEEEEC
Confidence 421111 000 01 2478999999
Q ss_pred CcchHHHHHHHHHHHHhCCCCcCeEEEc
Q 017873 234 EFLSLYETERLVQELTKFEIDTHNIIIN 261 (365)
Q Consensus 234 ~~~s~~et~~~~~~L~~~gi~v~~vVvN 261 (365)
+..+...+.++++.++ +.++.|+|+|
T Consensus 182 ~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 182 GRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 9999999999999999 7899999998
No 17
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.86 E-value=3.9e-20 Score=183.03 Aligned_cols=51 Identities=33% Similarity=0.283 Sum_probs=47.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
+++|+|+|.||||||||+|+|||..||.+|+|||+||+|||++++.+||..
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~ 171 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVL 171 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCC
Confidence 356789999999999999999999999999999999999999999999864
No 18
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.86 E-value=1.1e-20 Score=175.03 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=106.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccccccc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGS 106 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 106 (365)
+.|+|+|+||||||||+|+|||.+|+++|+||++||+|++ ++++.+||.+... .... .+.....+....+ +..
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~-~~~~----~~~~~~~~~~~~~-~~~ 74 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKP-VTLH----DVLAGEADIKDAI-YEG 74 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCC-CCHH----HHhcCCCCHHHhe-EeC
Confidence 3688999999999999999999999999999999999996 6888888765211 0100 0000000001111 001
Q ss_pred ccCccchhHHh-hhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHH
Q 017873 107 TEGMDSLFSEL-ANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ 185 (365)
Q Consensus 107 ~~~~~~~~~~~-~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~ 185 (365)
..++..+.... ...... .....+..++..+.. +||||||||||+.+..... .
T Consensus 75 ~~~l~~lp~~~~~~~~~~-~~~~~l~~~l~~l~~-~yD~VIiD~p~~~~~~~~~-------------------------~ 127 (251)
T TIGR01969 75 PFGVKVIPAGVSLEGLRK-ADPDKLEDVLKEIID-DTDFLLIDAPAGLERDAVT-------------------------A 127 (251)
T ss_pred CCCEEEEeCCCCHHHHhh-cCHHHHHHHHHHHHh-hCCEEEEeCCCccCHHHHH-------------------------H
Confidence 11111110000 000000 011245566666665 6999999999977532111 0
Q ss_pred HHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 186 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+ .. .+.+++|+.|+..++.++.++.+.+...++++.++|+|++
T Consensus 128 l-------------------------------~~----ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~ 170 (251)
T TIGR01969 128 L-------------------------------AA----ADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRV 170 (251)
T ss_pred H-------------------------------Hh----CCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECC
Confidence 0 01 2478999999999999999998888888999899999999
No 19
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.86 E-value=8.8e-21 Score=178.52 Aligned_cols=174 Identities=19% Similarity=0.239 Sum_probs=99.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHh-hcccCCCceeecCcCCceeeecCccccccccc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF-QQRFTKTPTLVNGFSNLYAMEVDPSVEEETGS 106 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 106 (365)
++|+|+ |||||||||+|+|||.+||++|+||++||+||+++.+.++ |.... .+....+.+-.....+....+ ...
T Consensus 2 ~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~--~~~~d~l~~~~~~~~~~~~~i-~~~ 77 (273)
T PRK13232 2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQ--KTVLDTLRSEGDEGVDLDVVM-QPG 77 (273)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCC--CcHHHHHHhcCCCCCCHHHEE-EeC
Confidence 567788 9999999999999999999999999999999998888776 32211 110000000000000000000 000
Q ss_pred ccCccchhH-----HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhh
Q 017873 107 TEGMDSLFS-----ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181 (365)
Q Consensus 107 ~~~~~~~~~-----~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~ 181 (365)
..++..+.. .......+......+.+.+..+.. +|||||||||+....-.+. .
T Consensus 78 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~yD~vlID~~~~~~~~~~~-~-------------------- 135 (273)
T PRK13232 78 FGDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTD-DLDYVFYDVLGDVVCGGFA-M-------------------- 135 (273)
T ss_pred CCCeEEEeCCCCCCCCCCCCCchhHHHHHHHHcccccc-cCCEEEEecCCCeeECCEe-c--------------------
Confidence 011110000 000011111111124444444444 6999999998754210011 0
Q ss_pred hHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC---CCCcCeE
Q 017873 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF---EIDTHNI 258 (365)
Q Consensus 182 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~---gi~v~~v 258 (365)
+++ + ...+.+++|++|+..++..+.++++.++.. ++++.|+
T Consensus 136 ---~~a-------------------------------l--~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~Gi 179 (273)
T PRK13232 136 ---PIR-------------------------------E--GKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGI 179 (273)
T ss_pred ---ccc-------------------------------c--cccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEE
Confidence 000 0 013589999999999999999988888753 6788899
Q ss_pred EEcCc
Q 017873 259 IINQV 263 (365)
Q Consensus 259 VvN~~ 263 (365)
|+|+.
T Consensus 180 V~n~~ 184 (273)
T PRK13232 180 ICNSR 184 (273)
T ss_pred EEeCC
Confidence 99987
No 20
>PRK11519 tyrosine kinase; Provisional
Probab=99.85 E-value=8.3e-21 Score=200.56 Aligned_cols=190 Identities=17% Similarity=0.217 Sum_probs=132.0
Q ss_pred hhhhhhhhcchhhHHhhhc-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873 6 QDQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT 83 (365)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~ 83 (365)
+...|+++.++++|+.... .+.+.|+|+|.+||+||||+|+|||..+|..|+||||||+|++ ++++..|+.+...
T Consensus 504 s~~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~--- 580 (719)
T PRK11519 504 DLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVN--- 580 (719)
T ss_pred CHHHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCC---
Confidence 3467999999999998544 4566778999999999999999999999999999999999987 6788888865221
Q ss_pred eecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHH---HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhh
Q 017873 84 LVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDE---AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ 160 (365)
Q Consensus 84 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~ 160 (365)
|+.++.....+....+......++..+..+ ...|+..+ ...+..+++.++. +||||||||||.....+..
T Consensus 581 ---gl~~~l~~~~~l~~~i~~~~~~~l~~lp~g--~~~~~~~ell~s~~~~~ll~~l~~-~yD~ViiDtpP~~~v~Da~- 653 (719)
T PRK11519 581 ---GLSDILIGQGDITTAAKPTSIANFDLIPRG--QVPPNPSELLMSERFAELVNWASK-NYDLVLIDTPPILAVTDAA- 653 (719)
T ss_pred ---CHHHHhCCCCCHHHhecccCcCCEEEEeCC--CCCCCHHHHhhHHHHHHHHHHHHh-cCCEEEEeCCCcccchHHH-
Confidence 112221111111111100011222222111 11233333 2467777888876 7999999999965422211
Q ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHH
Q 017873 161 FPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE 240 (365)
Q Consensus 161 lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~e 240 (365)
.++ -+ .+.+++|+.++.++..+
T Consensus 654 ------------------------~l~------------------------------~~----~d~~l~Vvr~~~t~~~~ 675 (719)
T PRK11519 654 ------------------------IVG------------------------------RH----VGTTLMVARYAVNTLKE 675 (719)
T ss_pred ------------------------HHH------------------------------HH----CCeEEEEEeCCCCCHHH
Confidence 011 12 24789999999999999
Q ss_pred HHHHHHHHHhCCCCcCeEEEcCc
Q 017873 241 TERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 241 t~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
...+++.++..|+++.|+|+|++
T Consensus 676 ~~~~~~~l~~~~~~~~G~VlN~v 698 (719)
T PRK11519 676 VETSLSRFEQNGIPVKGVILNSI 698 (719)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCC
Confidence 99999999999999999999999
No 21
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.84 E-value=5.5e-21 Score=168.37 Aligned_cols=172 Identities=20% Similarity=0.250 Sum_probs=111.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCcccccccc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETG 105 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 105 (365)
++.|+++||||||||||+++|++.+||++|+||++||+|-. .||.-++|.+... +..+-++.-.+....+++ .
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~Ri----VYd~vdVi~g~~~l~QAL--I 75 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRI----VYDLVDVIEGEATLNQAL--I 75 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhccccee----eeeehhhhcCccchhhHh--h
Confidence 35788999999999999999999999999999999999977 8888888876321 111112211222222222 1
Q ss_pred cccCccchhHHhhhcCC--CHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhH
Q 017873 106 STEGMDSLFSELANAIP--GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183 (365)
Q Consensus 106 ~~~~~~~~~~~~~~~~p--g~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~ 183 (365)
....+++++--.++... .....-.+.++++.++..+|||||+|||++...=-.+
T Consensus 76 kDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~------------------------ 131 (272)
T COG2894 76 KDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKN------------------------ 131 (272)
T ss_pred ccccCCceEecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHHh------------------------
Confidence 11111111100001111 1111125667777777568999999999976531111
Q ss_pred HHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCC----CCc---C
Q 017873 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE----IDT---H 256 (365)
Q Consensus 184 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~g----i~v---~ 256 (365)
.+ .. ....++||+||..|++++-|.+..|...+ ..- .
T Consensus 132 -A~-------------------------------~~----Ad~AiVVtnPEvSsVRDsDRiiGlLesk~~rae~~~~~~~ 175 (272)
T COG2894 132 -AV-------------------------------YF----ADEAIVVTNPEVSSVRDSDRIIGLLESKSRRAEIGEEPKE 175 (272)
T ss_pred -hh-------------------------------hc----cceEEEEcCCCccccccchhheeehhcccchhhcCCcccc
Confidence 00 01 24789999999999999999999998665 322 6
Q ss_pred eEEEcCcc
Q 017873 257 NIIINQVL 264 (365)
Q Consensus 257 ~vVvN~~~ 264 (365)
.+++||+.
T Consensus 176 ~llvnR~~ 183 (272)
T COG2894 176 HLLLNRYR 183 (272)
T ss_pred eEEEEccC
Confidence 79999993
No 22
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.84 E-value=1.2e-20 Score=201.04 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=129.9
Q ss_pred hhhhhhhhcchhhHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873 6 QDQDQELEIPEGSVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT 83 (365)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~ 83 (365)
....|+++.++.+|+.+..+. .+.|.|+|.|||+||||+|+|||..+|+.|+||||||+|++ ++++.+|+.....
T Consensus 524 s~~~Ea~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~--- 600 (754)
T TIGR01005 524 PVAEEELRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVS--- 600 (754)
T ss_pred CcchHHHHHHHHHHhhhccCCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccC---
Confidence 345899999999998877654 45677999999999999999999999999999999999988 7899999865221
Q ss_pred eecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhh
Q 017873 84 LVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ 160 (365)
Q Consensus 84 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~ 160 (365)
|+.++.....+....+......++..+.... ..++..+. ..+..+++.++. +||||||||||.....+...
T Consensus 601 ---gl~~~l~~~~~~~~~i~~~~~~~l~~l~~g~--~~~~~~~ll~~~~~~~~l~~l~~-~yD~IiID~pp~~~~~d~~~ 674 (754)
T TIGR01005 601 ---GLLDLLAGLRSLLLDLTASGAASLPMLDSGL--FPHGITELLASPAMFSLVIHARL-YSDCVVVDVGTADPVRDMRA 674 (754)
T ss_pred ---ChHHHHcCCccHHHHhccCCCCCeeEecCCC--CCCCHHHHhccHHHHHHHHHHHh-hCCEEEEcCCCcchhHHHHH
Confidence 1111111111111111000111222111110 11222222 245667777776 79999999999765433220
Q ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHH
Q 017873 161 FPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE 240 (365)
Q Consensus 161 lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~e 240 (365)
+ . +..+.+++|+.++.++...
T Consensus 675 -------------------------l--------------------------------~--~~~D~vl~v~~~~~~~~~~ 695 (754)
T TIGR01005 675 -------------------------A--------------------------------A--RLAIIMLLVTAYDRVVVEC 695 (754)
T ss_pred -------------------------h--------------------------------h--hhCCeEEEEEEeCceeHHH
Confidence 0 0 1134788999999999999
Q ss_pred HHHHHHHHHhCCCCcCeEEEcCc
Q 017873 241 TERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 241 t~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.++++.++..|.++.|+|+|++
T Consensus 696 ~~~~~~~l~~~~~~~~GvvlN~~ 718 (754)
T TIGR01005 696 GRADAQGISRLNGEVTGVFLNML 718 (754)
T ss_pred HHHHHHHHHhcCCceEEEEecCC
Confidence 99999999999999999999999
No 23
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.84 E-value=2.3e-19 Score=164.69 Aligned_cols=143 Identities=18% Similarity=0.153 Sum_probs=97.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 107 (365)
+.|+|+|.||||||||+|.|||.+++++|+||++||+||+++++.|++....... .+...
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~~-----~~~~~--------------- 61 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNT-----WDPAC--------------- 61 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhccccC-----CCccc---------------
Confidence 5678999999999999999999999999999999999999999988874321100 00000
Q ss_pred cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHH
Q 017873 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT 187 (365)
Q Consensus 108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~ 187 (365)
.. ....+...+...++.+...+||||||||||+.+.+...
T Consensus 62 --------~~----~~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~---------------------------- 101 (231)
T PRK13849 62 --------EV----YAADELPLLEAAYEDAELQGFDYALADTHGGSSELNNT---------------------------- 101 (231)
T ss_pred --------ee----cCCCHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHH----------------------------
Confidence 00 00011123444555554347999999999976532211
Q ss_pred hhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHh------CCCCcCeEEEc
Q 017873 188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK------FEIDTHNIIIN 261 (365)
Q Consensus 188 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~------~gi~v~~vVvN 261 (365)
.+.- .+-+++.+.|+..++..+.+.+..+.+ .+++. .+++|
T Consensus 102 ------------------------------al~~--aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~-~iv~~ 148 (231)
T PRK13849 102 ------------------------------IIAS--SNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPT-AILRQ 148 (231)
T ss_pred ------------------------------HHHH--CCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCe-EEEEE
Confidence 0000 246788999999999888888766653 25554 49999
Q ss_pred Cc
Q 017873 262 QV 263 (365)
Q Consensus 262 ~~ 263 (365)
++
T Consensus 149 ~~ 150 (231)
T PRK13849 149 RV 150 (231)
T ss_pred ec
Confidence 98
No 24
>PHA02518 ParA-like protein; Provisional
Probab=99.84 E-value=3.5e-20 Score=167.20 Aligned_cols=138 Identities=22% Similarity=0.282 Sum_probs=98.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 107 (365)
+.|+|+|.||||||||+|+|||.+|+++|+||++||+||+.+++.|++...... +.+
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~~-------~~i---------------- 57 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGE-------PLI---------------- 57 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccCC-------CCC----------------
Confidence 367899999999999999999999999999999999999999999887432110 000
Q ss_pred cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHH
Q 017873 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT 187 (365)
Q Consensus 108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~ 187 (365)
|.......+...+..+.. .||||||||||+.+.+...
T Consensus 58 --------------~~~~~~~~~~~~l~~~~~-~~d~viiD~p~~~~~~~~~---------------------------- 94 (211)
T PHA02518 58 --------------PVVRMGKSIRADLPKVAS-GYDYVVVDGAPQDSELARA---------------------------- 94 (211)
T ss_pred --------------chhhccHHHHHHHHHHhc-cCCEEEEeCCCCccHHHHH----------------------------
Confidence 000000123344444555 6999999999976532111
Q ss_pred hhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC-----CCCcCeEEEcC
Q 017873 188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-----EIDTHNIIINQ 262 (365)
Q Consensus 188 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~-----gi~v~~vVvN~ 262 (365)
.+. ..+.+++++.|+..++..+.++.+.++.. +++..++|.|+
T Consensus 95 ------------------------------~l~--~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~ 142 (211)
T PHA02518 95 ------------------------------ALR--IADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISR 142 (211)
T ss_pred ------------------------------HHH--HCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEec
Confidence 011 02578999999999998888887777653 56667788888
Q ss_pred c
Q 017873 263 V 263 (365)
Q Consensus 263 ~ 263 (365)
.
T Consensus 143 ~ 143 (211)
T PHA02518 143 A 143 (211)
T ss_pred c
Confidence 7
No 25
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.84 E-value=1.4e-20 Score=199.06 Aligned_cols=190 Identities=18% Similarity=0.185 Sum_probs=131.3
Q ss_pred hhhhhhhhcchhhHHhhhc-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873 6 QDQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT 83 (365)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~ 83 (365)
+...|.++.++++|+.... .+.+.|+|+|.+||+||||+|+|||.++|..|+||||||+|++ ++++.+|+.....
T Consensus 509 s~~~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~--- 585 (726)
T PRK09841 509 DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEH--- 585 (726)
T ss_pred CHHHHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCC---
Confidence 3457899999999998554 5566788999999999999999999999999999999999988 6788888754211
Q ss_pred eecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhh
Q 017873 84 LVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ 160 (365)
Q Consensus 84 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~ 160 (365)
|+.++.....+....+......+++.+... ...+...+. ..+..+++.++. +||||||||||....-+..
T Consensus 586 ---gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g--~~~~~p~ell~~~~~~~ll~~l~~-~yD~IIIDtPP~~~~~Da~- 658 (726)
T PRK09841 586 ---GLSEYLAGKDELNKVIQHFGKGGFDVITRG--QVPPNPSELLMRDRMRQLLEWAND-HYDLVIVDTPPMLAVSDAA- 658 (726)
T ss_pred ---CHHHHhCCCCCHHHheeccCCCCEEEEeCC--CCCCCHHHHhCcHHHHHHHHHHHh-cCCEEEEeCCCccccchHH-
Confidence 122222222222222100011122222111 112233332 357777887777 7999999999965432211
Q ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHH
Q 017873 161 FPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE 240 (365)
Q Consensus 161 lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~e 240 (365)
. ++ .+ .+.+++|+.++.++..+
T Consensus 659 -----~-------------------la------------------------------~~----ad~~llVvr~~~t~~~~ 680 (726)
T PRK09841 659 -----V-------------------VG------------------------------RS----VGTSLLVARFGLNTAKE 680 (726)
T ss_pred -----H-------------------HH------------------------------Hh----CCeEEEEEeCCCCCHHH
Confidence 0 00 12 24789999999999999
Q ss_pred HHHHHHHHHhCCCCcCeEEEcCc
Q 017873 241 TERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 241 t~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.++++.|...|.++.|+|+|++
T Consensus 681 ~~~~~~~l~~~~~~~~G~VlN~~ 703 (726)
T PRK09841 681 VSLSMQRLEQAGVNIKGAILNGV 703 (726)
T ss_pred HHHHHHHHHhCCCceEEEEEeCc
Confidence 99999999999999999999999
No 26
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.84 E-value=4e-20 Score=172.13 Aligned_cols=172 Identities=19% Similarity=0.217 Sum_probs=108.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccc-cc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET 104 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~ 104 (365)
++.|.|+|+||||||||+|+|||.++++.|+||++||+|++ ++++.+||.+........ ++.....+....+ ..
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~----~~~~~~~~~~~~i~~~ 76 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLV----DVVEGECRLQQALIKD 76 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHH----HHhcCcCcHHHHhhcC
Confidence 35788999999999999999999999999999999999997 888888876422110000 0000000000000 00
Q ss_pred ccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHH
Q 017873 105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMIN 184 (365)
Q Consensus 105 ~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~ 184 (365)
....++..+...... .........+..+++.+.+ .||||||||||+.+.....
T Consensus 77 ~~~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~l~~-~~D~viiD~p~~~~~~~~~------------------------- 129 (261)
T TIGR01968 77 KRLKNLYLLPASQTR-DKDAVTPEQMKKLVNELKE-EFDYVIIDCPAGIESGFRN------------------------- 129 (261)
T ss_pred CCCCCeEEEeCCCch-hhhhCCHHHHHHHHHHHHH-hCCEEEEeCCCCcCHHHHH-------------------------
Confidence 000111111000000 0000011245666777776 6999999999976531110
Q ss_pred HHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCcc
Q 017873 185 QMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264 (365)
Q Consensus 185 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~ 264 (365)
.+. ..+.+++|++|+..++..+.++++.+...+....++|+|++.
T Consensus 130 ---------------------------------~l~--~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~ 174 (261)
T TIGR01968 130 ---------------------------------AVA--PADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLR 174 (261)
T ss_pred ---------------------------------HHH--hCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcC
Confidence 000 024789999999999999999999999988767789999983
No 27
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.84 E-value=2.2e-19 Score=177.14 Aligned_cols=52 Identities=35% Similarity=0.330 Sum_probs=48.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
++++|+|+|.||||||||+|+|||.+||+.|+|||+||+||+++++.+||..
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ls~~~g~~ 154 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLSALFGYQ 154 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHcCCC
Confidence 3466789999999999999999999999999999999999999999999864
No 28
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.83 E-value=2.6e-19 Score=165.43 Aligned_cols=51 Identities=37% Similarity=0.433 Sum_probs=47.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhccc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF 78 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~ 78 (365)
+.|+|+|+||||||||+|+|||.+||++|+|||+||+|++++++..||.+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~ 52 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDW 52 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCC
Confidence 467899999999999999999999999999999999999999998888653
No 29
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.83 E-value=4.2e-20 Score=174.05 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=43.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~ 75 (365)
++|+|+ |||||||||+|+|||.+||++|+|||+||+|||++.+.++.
T Consensus 2 ~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~ 48 (274)
T PRK13235 2 RKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLL 48 (274)
T ss_pred CEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccccccccc
Confidence 467788 89999999999999999999999999999999999888773
No 30
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.83 E-value=9.5e-20 Score=170.79 Aligned_cols=48 Identities=33% Similarity=0.514 Sum_probs=43.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~ 76 (365)
++|+|+ |||||||||+|+|||.+||++|+||++||+||+.+++.+++.
T Consensus 2 ~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~ 49 (270)
T cd02040 2 RQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLG 49 (270)
T ss_pred cEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcC
Confidence 456677 799999999999999999999999999999999998877653
No 31
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.83 E-value=3.1e-19 Score=157.37 Aligned_cols=148 Identities=22% Similarity=0.257 Sum_probs=97.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 107 (365)
+|+|+|+|||+||||+|+|||.++ +||+|||+|++ ++++.+|+.+..... .... .. .....
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~-------~~~~-~~-~~~~~----- 62 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEE-------DFIV-GG-KKAVI----- 62 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCccccc-------ccee-cC-CceEE-----
Confidence 478999999999999999999999 89999999987 889999987632110 0000 00 00000
Q ss_pred cCccchhHHhhhcCCCHHHHHHHHHHHHHH----HhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhH
Q 017873 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLV----QTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183 (365)
Q Consensus 108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l----~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~ 183 (365)
+ ......+|.. ...+..+.+.+ ...+||||||||||+.+.....
T Consensus 63 ---~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~------------------------ 110 (179)
T cd03110 63 ---D----PELCISCGLC-GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIA------------------------ 110 (179)
T ss_pred ---c----hhhhccccch-HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHH------------------------
Confidence 0 0000001110 11122222222 2247999999999976531100
Q ss_pred HHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 184 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
.+.. .+.+++|+.|+..++..+.++++.++..++++ ++|+|++
T Consensus 111 ----------------------------------~l~~--aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~ 153 (179)
T cd03110 111 ----------------------------------SLTG--ADAALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKY 153 (179)
T ss_pred ----------------------------------HHHc--CCEEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCC
Confidence 0111 35789999999999999999999999999886 7999999
No 32
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.83 E-value=7.3e-20 Score=171.68 Aligned_cols=48 Identities=40% Similarity=0.547 Sum_probs=43.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~ 76 (365)
|+|+|+ |||||||||+|+|||.+||++|+|||+||+||+.+++..++.
T Consensus 1 ~~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~ 48 (267)
T cd02032 1 MVLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTG 48 (267)
T ss_pred CEEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccC
Confidence 456666 799999999999999999999999999999999998887764
No 33
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.82 E-value=7e-19 Score=173.08 Aligned_cols=52 Identities=29% Similarity=0.126 Sum_probs=47.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC-CCCCChhhHhhcc
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST-DPAHNLSDAFQQR 77 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~-D~~~~l~~~~~~~ 77 (365)
+.++|+|+|.||||||||+|+|||.+||.+|+|||+||+ |||++++.+||..
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~ 157 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWV 157 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcC
Confidence 446678999999999999999999999999999999996 9999999988764
No 34
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.82 E-value=1.5e-19 Score=170.32 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=42.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCCCChhhH-hhc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHNLSDA-FQQ 76 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~~~l~~~-~~~ 76 (365)
++|+|+ +||||||||+|+|||.+||+ .|+||||||+|||++.+.+ +|.
T Consensus 3 ~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~ 52 (275)
T PRK13233 3 RKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGG 52 (275)
T ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCC
Confidence 466788 89999999999999999997 6999999999999998876 453
No 35
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.82 E-value=9.6e-20 Score=172.02 Aligned_cols=48 Identities=33% Similarity=0.565 Sum_probs=43.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~ 76 (365)
++|+|+ |||||||||+|+|||.+||++|+||||||+||++|++.+|+.
T Consensus 2 ~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~ 49 (279)
T PRK13230 2 RKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVG 49 (279)
T ss_pred cEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccC
Confidence 456666 899999999999999999999999999999999999988863
No 36
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.82 E-value=6e-19 Score=173.29 Aligned_cols=51 Identities=27% Similarity=0.225 Sum_probs=47.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC-CCCCChhhHhhcc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST-DPAHNLSDAFQQR 77 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~-D~~~~l~~~~~~~ 77 (365)
.++|+|+|.||||||||+|+|||..||.+|+|||+||+ |||+|++.+||..
T Consensus 106 ~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~ 157 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYV 157 (387)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcC
Confidence 45677999999999999999999999999999999996 9999999988864
No 37
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.82 E-value=3.8e-19 Score=166.98 Aligned_cols=172 Identities=22% Similarity=0.214 Sum_probs=104.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccc-cc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET 104 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~ 104 (365)
++.|+|+|+||||||||+|+|||.+++++|+||++||+|++ ++++.+||.+........ +......+....+ ..
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~----~~~~~~~~~~~~~~~~ 77 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFV----NVIQGDATLNQALIKD 77 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHH----HHhcCCCcHHHhcccc
Confidence 35788999999999999999999999999999999999996 789888886532110000 0000000000000 00
Q ss_pred ccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHH
Q 017873 105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMIN 184 (365)
Q Consensus 105 ~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~ 184 (365)
....++..+..... ..........+.++++.++...||||||||||+.+......
T Consensus 78 ~~~~~~~~lp~~~~-~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~------------------------ 132 (270)
T PRK10818 78 KRTENLYILPASQT-RDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMA------------------------ 132 (270)
T ss_pred CCcCCEEEecCCCC-cchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHH------------------------
Confidence 00111111110000 00000011234566666654469999999999876433220
Q ss_pred HHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC-------CCCc-C
Q 017873 185 QMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-------EIDT-H 256 (365)
Q Consensus 185 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~-------gi~v-~ 256 (365)
+. ..+.+++|++|+..++..+.++++.+... +.++ .
T Consensus 133 ----------------------------------l~--~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~ 176 (270)
T PRK10818 133 ----------------------------------LY--FADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKE 176 (270)
T ss_pred ----------------------------------HH--hCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccce
Confidence 00 13578999999999999999999998632 1232 4
Q ss_pred eEEEcCc
Q 017873 257 NIIINQV 263 (365)
Q Consensus 257 ~vVvN~~ 263 (365)
++|+|++
T Consensus 177 ~vv~n~~ 183 (270)
T PRK10818 177 HLLLTRY 183 (270)
T ss_pred EEEEecc
Confidence 7899998
No 38
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.82 E-value=1.1e-19 Score=173.00 Aligned_cols=48 Identities=29% Similarity=0.470 Sum_probs=42.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~ 75 (365)
++++.++|||||||||+|+|||.+||++|+|||+||+|++++...+|.
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~ 53 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLML 53 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhc
Confidence 355544999999999999999999999999999999999987777664
No 39
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.82 E-value=2.5e-19 Score=169.97 Aligned_cols=47 Identities=40% Similarity=0.557 Sum_probs=41.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~ 75 (365)
|+|+| +|||||||||+|+|||.+||++|+|||+||+|||++++.+++
T Consensus 1 m~ia~-~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~ 47 (290)
T CHL00072 1 MKLAV-YGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLT 47 (290)
T ss_pred CeEEE-ECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccccccc
Confidence 34444 569999999999999999999999999999999999988773
No 40
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.82 E-value=3.5e-19 Score=167.26 Aligned_cols=48 Identities=40% Similarity=0.541 Sum_probs=43.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~ 76 (365)
++|+|+ +||||||||+|+|||.+||++|+|||+||+||+.+++.+++.
T Consensus 3 ~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~ 50 (270)
T PRK13185 3 LVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTG 50 (270)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcC
Confidence 455666 799999999999999999999999999999999999988864
No 41
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.82 E-value=5.3e-20 Score=172.68 Aligned_cols=47 Identities=38% Similarity=0.574 Sum_probs=43.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~ 75 (365)
|+|+|. |||||||||+|+|||.+||++|+|||+||+||+.+++..|+
T Consensus 1 ~~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~ 47 (268)
T TIGR01281 1 MILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLT 47 (268)
T ss_pred CEEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceec
Confidence 456677 89999999999999999999999999999999999998886
No 42
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.82 E-value=2.7e-19 Score=170.23 Aligned_cols=49 Identities=31% Similarity=0.466 Sum_probs=43.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~ 75 (365)
++++|+|+ |||||||||+++|||.+|++.|+|||+||+||+.+.+..++
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~ 51 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLIL 51 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccc
Confidence 44566675 99999999999999999999999999999999988877664
No 43
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.82 E-value=4.2e-19 Score=155.75 Aligned_cols=123 Identities=27% Similarity=0.345 Sum_probs=93.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 107 (365)
.|+|+|+|||+||||+|+|||.+++++|+||++||+|++ ++++.+++.+.... .++
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~-------~~~---------------- 57 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVV-------YTL---------------- 57 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCC-------cch----------------
Confidence 367999999999999999999999999999999999996 77777665431100 000
Q ss_pred cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHH
Q 017873 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT 187 (365)
Q Consensus 108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~ 187 (365)
....++ |||||||||+.+.....
T Consensus 58 ----------~~~~~~-------------------d~viiD~p~~~~~~~~~---------------------------- 80 (179)
T cd02036 58 ----------HDVLAG-------------------DYILIDSPAGIERGFIT---------------------------- 80 (179)
T ss_pred ----------hhcccC-------------------CEEEEECCCCCcHHHHH----------------------------
Confidence 000011 99999999976532110
Q ss_pred hhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 188 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
.+. ..+.+++|+.|+..++..+.++++.++..+.+..++|+|++
T Consensus 81 ------------------------------~l~--~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~ 124 (179)
T cd02036 81 ------------------------------AIA--PADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRV 124 (179)
T ss_pred ------------------------------HHH--hCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCC
Confidence 000 02468999999999999999999999998888899999999
No 44
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.81 E-value=7.9e-19 Score=165.37 Aligned_cols=46 Identities=30% Similarity=0.522 Sum_probs=41.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~ 75 (365)
.|+| +|||||||||+|+|||.+||++|+||++||+|||.+.+..+.
T Consensus 2 ~ia~-~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~ 47 (275)
T TIGR01287 2 QIAI-YGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLL 47 (275)
T ss_pred eeEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCcccccc
Confidence 3445 589999999999999999999999999999999999887664
No 45
>PRK10037 cell division protein; Provisional
Probab=99.80 E-value=3.7e-19 Score=165.39 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=46.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
+.|.|.|.||||||||+|+|||.+||++|+||||||+||+.+++..||..
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~ 51 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVD 51 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCC
Confidence 56789999999999999999999999999999999999999999888864
No 46
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.79 E-value=8.7e-19 Score=155.76 Aligned_cols=153 Identities=24% Similarity=0.262 Sum_probs=104.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc---cCCCceeecCcCCceeeecCccccccccc
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR---FTKTPTLVNGFSNLYAMEVDPSVEEETGS 106 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 106 (365)
|+|+|+|||+||||+|++||.+++++|+||++||+|++.+...++... ..... ..... .
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~------~~~~~------------~ 62 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGL------ENANA------------I 62 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSS------HGHHC------------H
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccc------eehhh------------h
Confidence 689999999999999999999999999999999999998887776622 00000 00000 0
Q ss_pred ccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHH
Q 017873 107 TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186 (365)
Q Consensus 107 ~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~ 186 (365)
...++..... ....+ .....+.++++.+....||||||||||+.+.....
T Consensus 63 ~~~~~~~~~~--~~~~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~--------------------------- 112 (195)
T PF01656_consen 63 LKNFESQDIY--QGEEY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRN--------------------------- 112 (195)
T ss_dssp HESCCHHHHH--HHCHC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHH---------------------------
T ss_pred hhccchhhhh--hhhhh-hHHHHHHHHHHHhhhccccceeecccccccHHHHH---------------------------
Confidence 0000000000 00001 23346777777766545999999999977643110
Q ss_pred HhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCC--CCcCeEEEcCc
Q 017873 187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE--IDTHNIIINQV 263 (365)
Q Consensus 187 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~g--i~v~~vVvN~~ 263 (365)
.+.. .+.+++|+.|+..++..+.++++.++..+ ++..++|+|++
T Consensus 113 -------------------------------~l~~--ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v 158 (195)
T PF01656_consen 113 -------------------------------ALAA--ADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRV 158 (195)
T ss_dssp -------------------------------HHHT--SSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEE
T ss_pred -------------------------------HHHh--CceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeee
Confidence 0111 35789999999999999999999999888 55789999999
No 47
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.79 E-value=4.2e-18 Score=158.93 Aligned_cols=53 Identities=34% Similarity=0.357 Sum_probs=48.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCCCChhhHhhcccC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNLSDAFQQRFT 79 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~~~l~~~~~~~~~ 79 (365)
++.|.|+|.||||||||+|.|||.+|| ..|+|||+||+|||++++.+||....
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~ 55 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPD 55 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhcCCCcc
Confidence 467889999999999999999999999 66699999999999999999998643
No 48
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.79 E-value=3.6e-18 Score=164.53 Aligned_cols=171 Identities=14% Similarity=0.162 Sum_probs=106.6
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC-hhhHhhcccCCCceeecCcCCcee--eecCcccc
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN-LSDAFQQRFTKTPTLVNGFSNLYA--MEVDPSVE 101 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~-l~~~~~~~~~~~~~~~~~~~~l~~--~~~d~~~~ 101 (365)
..++.|.|+|+||||||||+|+|||.+++++|+||+|||+|++.+ +..+||.+....-.. ..+.. ..++....
T Consensus 91 ~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~----~~~~~~~~~~~~~~l 166 (322)
T TIGR03815 91 ARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRW----PDLSQARGRLPAGAL 166 (322)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCH----HHHhhcCCCcCHHHH
Confidence 356778899999999999999999999999999999999999855 566777642110000 00000 01111110
Q ss_pred cc-cccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhh
Q 017873 102 EE-TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG 180 (365)
Q Consensus 102 ~~-~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~ 180 (365)
.+ +....++..+..... .+.......+..+++.++. .||||||||||+.+.....
T Consensus 167 ~~~~~~~~~l~vl~~~~~--~~~~~~~~~l~~~l~~l~~-~~D~VIID~p~~~~~~~~~--------------------- 222 (322)
T TIGR03815 167 RDALPRRGGLSVLSWGRA--VGAALPPAAVRAVLDAARR-GGDLVVVDLPRRLTPAAET--------------------- 222 (322)
T ss_pred HHhCCCcCCeEEEecCCC--CcCCCCHHHHHHHHHHHHh-cCCEEEEeCCCCCCHHHHH---------------------
Confidence 00 111112211110000 0000112356777777776 7999999999976532110
Q ss_pred hhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEE
Q 017873 181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIII 260 (365)
Q Consensus 181 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVv 260 (365)
.+. ..+.+++|+.|+..++..+.++++.+...+.++ .+|+
T Consensus 223 -------------------------------------~L~--~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~-~lVv 262 (322)
T TIGR03815 223 -------------------------------------ALE--SADLVLVVVPADVRAVAAAARVCPELGRRNPDL-RLVV 262 (322)
T ss_pred -------------------------------------HHH--HCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCe-EEEE
Confidence 011 135789999999999999999999999877544 6778
Q ss_pred cCc
Q 017873 261 NQV 263 (365)
Q Consensus 261 N~~ 263 (365)
|+.
T Consensus 263 ~~~ 265 (322)
T TIGR03815 263 RGP 265 (322)
T ss_pred eCC
Confidence 876
No 49
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.78 E-value=1.9e-18 Score=161.78 Aligned_cols=47 Identities=30% Similarity=0.461 Sum_probs=41.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~ 75 (365)
+++|+|+ +||||||||+|+|||.+|++.| |||+||+||+++++..++
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~ 48 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLC 48 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhh
Confidence 3566777 7999999999999999999999 999999999998887654
No 50
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.77 E-value=5.3e-18 Score=161.25 Aligned_cols=45 Identities=33% Similarity=0.529 Sum_probs=41.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHh
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF 74 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~ 74 (365)
+|+|+ |||||||||+|+|||.+||++|+|||+||+||+.+.+..+
T Consensus 2 vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l 46 (296)
T TIGR02016 2 IIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLL 46 (296)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchh
Confidence 56677 9999999999999999999999999999999998777666
No 51
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.75 E-value=2.1e-17 Score=158.34 Aligned_cols=50 Identities=32% Similarity=0.473 Sum_probs=42.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC-ChhhHhhcc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQR 77 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~-~l~~~~~~~ 77 (365)
.+++.++||||+||||+++|||.+||++|+||++||+|+++ +++.+||..
T Consensus 31 ~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~ 81 (329)
T cd02033 31 TQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGK 81 (329)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhcccc
Confidence 34554458999999999999999999999999999999885 677788754
No 52
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.73 E-value=9.6e-17 Score=146.85 Aligned_cols=53 Identities=38% Similarity=0.411 Sum_probs=49.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT 79 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~ 79 (365)
+++|++.|-||||||||+++|||++|++.|++|++||+||+..|.-.||.+..
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~ 53 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLD 53 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCc
Confidence 45788999999999999999999999999999999999999999999998754
No 53
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.72 E-value=4.9e-17 Score=145.37 Aligned_cols=170 Identities=22% Similarity=0.265 Sum_probs=111.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC-CCEEEEeCCCCCChhhHhhcccCCCcee---------ecCcCCceeeecCccc
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTDPAHNLSDAFQQRFTKTPTL---------VNGFSNLYAMEVDPSV 100 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G-~rVLLiD~D~~~~l~~~~~~~~~~~~~~---------~~~~~~l~~~~~d~~~ 100 (365)
+-++||||+||||+|+.||..+..+| ++||+||+||..+|+..||++.+.++.. ....++....+.....
T Consensus 3 IaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~~ 82 (255)
T COG3640 3 IAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKEN 82 (255)
T ss_pred EEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccccC
Confidence 45679999999999999888888665 9999999999999999999986421110 0000110000000000
Q ss_pred cc--ccc----c-ccCcc-----chh-HHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHH
Q 017873 101 EE--ETG----S-TEGMD-----SLF-SELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEK 167 (365)
Q Consensus 101 ~~--~~~----~-~~~~~-----~~~-~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~ 167 (365)
+. ++. . ...+. .+. ....|.+|- ...++.+++.+.-.+||+||+||=++...
T Consensus 83 ~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~---~allR~~l~~l~~~~~e~VivDtEAGiEH------------ 147 (255)
T COG3640 83 PLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPM---NALLRRLLRHLILNRYEVVIVDTEAGIEH------------ 147 (255)
T ss_pred cchhhhhHHHhhhcCCccEEEeccccCCCCcccchH---HHHHHHHHHHHhcccCcEEEEecccchhh------------
Confidence 00 000 0 00011 000 012233331 23677888888775799999999887652
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHH
Q 017873 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQE 247 (365)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~ 247 (365)
||++ ... ..+.+++|+-|..-|+..++|+.+.
T Consensus 148 ----------------------fgRg------------------------~~~--~vD~vivVvDpS~~sl~taeri~~L 179 (255)
T COG3640 148 ----------------------FGRG------------------------TIE--GVDLVIVVVDPSYKSLRTAERIKEL 179 (255)
T ss_pred ----------------------hccc------------------------ccc--CCCEEEEEeCCcHHHHHHHHHHHHH
Confidence 2322 122 2568899999999999999999999
Q ss_pred HHhCCCCcCeEEEcCc
Q 017873 248 LTKFEIDTHNIIINQV 263 (365)
Q Consensus 248 L~~~gi~v~~vVvN~~ 263 (365)
-.+.|+.-..+|+|++
T Consensus 180 ~~elg~k~i~~V~NKv 195 (255)
T COG3640 180 AEELGIKRIFVVLNKV 195 (255)
T ss_pred HHHhCCceEEEEEeec
Confidence 9999998889999999
No 54
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.71 E-value=1.4e-16 Score=128.66 Aligned_cols=101 Identities=24% Similarity=0.383 Sum_probs=82.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccccccccc
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE 108 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 108 (365)
|+++|+|||+||||++.+||.++++. |++|+++|+|++.+.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------------------------------- 43 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------- 43 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--------------------------------------
Confidence 67899999999999999999999998 999999999997320
Q ss_pred CccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 017873 109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188 (365)
Q Consensus 109 ~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~ 188 (365)
|||||||||+.+.....
T Consensus 44 ----------------------------------D~IIiDtpp~~~~~~~~----------------------------- 60 (106)
T cd03111 44 ----------------------------------DYVVVDLGRSLDEVSLA----------------------------- 60 (106)
T ss_pred ----------------------------------CEEEEeCCCCcCHHHHH-----------------------------
Confidence 89999999976532111
Q ss_pred hhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCC---cCeEEEcC
Q 017873 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEID---THNIIINQ 262 (365)
Q Consensus 189 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~---v~~vVvN~ 262 (365)
.+. ..+.+++|+.|+..++..+.++++.+++.+.+ -..+|+||
T Consensus 61 -----------------------------~l~--~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 61 -----------------------------ALD--QADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred -----------------------------HHH--HcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 000 02478999999999999999999999988865 45688886
No 55
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.70 E-value=6.7e-16 Score=139.37 Aligned_cols=144 Identities=18% Similarity=0.234 Sum_probs=97.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccccccc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGS 106 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 106 (365)
++.|.|+|.|||+||||.+..||..|+++|.+|.|||+||+.++..|-....... ... .++.+..
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~--~~~--~~~~V~~----------- 65 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPG--AWP--DRIEVYE----------- 65 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccC--CCC--CCeeEEe-----------
Confidence 3578899999999999999999999999999999999999999998865432110 000 1111111
Q ss_pred ccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHH
Q 017873 107 TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186 (365)
Q Consensus 107 ~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~ 186 (365)
..+...+....+......|||||||+.++.+.+.-.. +
T Consensus 66 -----------------~~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~a-------------------------i 103 (231)
T PF07015_consen 66 -----------------ADELTILEDAYEAAEASGFDFVLVDLEGGASELNDYA-------------------------I 103 (231)
T ss_pred -----------------ccchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHH-------------------------H
Confidence 0112245555555554369999999999877533220 1
Q ss_pred HhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC------CCCcCeEEE
Q 017873 187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF------EIDTHNIII 260 (365)
Q Consensus 187 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~------gi~v~~vVv 260 (365)
+ . .+-+++=+.+..+-..++.+.++++.+. .+|. .|+.
T Consensus 104 a-------------------------------~----sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~-~Vl~ 147 (231)
T PF07015_consen 104 A-------------------------------R----SDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPA-AVLF 147 (231)
T ss_pred H-------------------------------H----CCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCe-eEEE
Confidence 0 0 1345666667777788888888777654 3455 5888
Q ss_pred cCc
Q 017873 261 NQV 263 (365)
Q Consensus 261 N~~ 263 (365)
+|+
T Consensus 148 Tr~ 150 (231)
T PF07015_consen 148 TRV 150 (231)
T ss_pred ecC
Confidence 998
No 56
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.68 E-value=4.3e-16 Score=142.10 Aligned_cols=50 Identities=30% Similarity=0.443 Sum_probs=44.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC-CCCChhhHhhcc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD-PAHNLSDAFQQR 77 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D-~~~~l~~~~~~~ 77 (365)
+|+|+++|||||+||||+|+|||..|+.. +|++|+|+| ..||++-+|+.+
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e 51 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVE 51 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccc
Confidence 47899999999999999999999999854 899999999 458888788765
No 57
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.66 E-value=2.7e-15 Score=127.08 Aligned_cols=106 Identities=27% Similarity=0.367 Sum_probs=84.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccccC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEG 109 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 109 (365)
|.|+|+|||+||||+++++|..++.+|++|+++|+|++.+..
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~-------------------------------------- 43 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL-------------------------------------- 43 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC--------------------------------------
Confidence 679999999999999999999999999999999999853210
Q ss_pred ccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 017873 110 MDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL 189 (365)
Q Consensus 110 ~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~ 189 (365)
+ ||||||||||+.+.....
T Consensus 44 ------------~-------------------yd~VIiD~p~~~~~~~~~------------------------------ 62 (139)
T cd02038 44 ------------D-------------------YDYIIIDTGAGISDNVLD------------------------------ 62 (139)
T ss_pred ------------C-------------------CCEEEEECCCCCCHHHHH------------------------------
Confidence 0 999999999965432110
Q ss_pred hCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC-CCCcCeEEEcCcc
Q 017873 190 FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-EIDTHNIIINQVL 264 (365)
Q Consensus 190 ~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~-gi~v~~vVvN~~~ 264 (365)
.+.. .+.+++|+.|+..++..+.+.++.+.+. +....++|+|++.
T Consensus 63 ----------------------------~l~~--aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~ 108 (139)
T cd02038 63 ----------------------------FFLA--ADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAE 108 (139)
T ss_pred ----------------------------HHHh--CCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 0111 2478999999999999999999988643 4556689999993
No 58
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.66 E-value=4.9e-16 Score=142.19 Aligned_cols=234 Identities=22% Similarity=0.329 Sum_probs=116.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhH-hhcccCCCceeecCcCCcee-eecCccccccccc
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA-FQQRFTKTPTLVNGFSNLYA-MEVDPSVEEETGS 106 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~-~~~~~~~~~~~~~~~~~l~~-~~~d~~~~~~~~~ 106 (365)
+|+|. ||||.||||+|+|++.+||+.|+||++|-|||.++.+.. ++... .++....+..-.. -.++.++.+ ..+
T Consensus 2 ~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~--~~Tvld~~~~~~~~e~~~ledvv-~~G 77 (273)
T PF00142_consen 2 KIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKA--IPTVLDLLREKGSVEDLELEDVV-KEG 77 (273)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS---SBHHHHHHHHCTGGGS-HHHHS-EEE
T ss_pred eEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCcc--chhHHHHHhhccccccCCCCcEE-Eec
Confidence 45554 899999999999999999999999999999999887754 44321 1111110000000 000000000 000
Q ss_pred ccCccchhHHhhhcCCCH----HHHHHHHHHHHHHHh--CCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhh
Q 017873 107 TEGMDSLFSELANAIPGI----DEAMSFAEMLKLVQT--MDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG 180 (365)
Q Consensus 107 ~~~~~~~~~~~~~~~pg~----~~~~~l~~l~~~l~~--~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~ 180 (365)
..++..+. ....-||. .-.....++++...- .+||+|++|.-... . .+
T Consensus 78 ~~gi~CvE--sGGPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDV-----V-------------------CG 131 (273)
T PF00142_consen 78 FKGILCVE--SGGPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDV-----V-------------------CG 131 (273)
T ss_dssp GGGEEEEE-----SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSS-----S-------------------CT
T ss_pred cCCceeec--cCCCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeee-----E-------------------Ee
Confidence 11111110 01112221 111122233333322 26899999965411 0 11
Q ss_pred hhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC----CCCcC
Q 017873 181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EIDTH 256 (365)
Q Consensus 181 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~----gi~v~ 256 (365)
++.-|+. .-....+++||+-+.+|+..+.++.+.++.+ +.++.
T Consensus 132 GFamPir---------------------------------~g~a~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~ 178 (273)
T PF00142_consen 132 GFAMPIR---------------------------------EGYAQEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLG 178 (273)
T ss_dssp TTTHHHH---------------------------------TTS-SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEE
T ss_pred eeehhhh---------------------------------hccCCEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceE
Confidence 1111221 1123589999999999999999999988865 46899
Q ss_pred eEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEec--------------CCCCCCCC--HHHHHHHHHh
Q 017873 257 NIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLP--------------LLPEEVTG--IEALKAFSQH 320 (365)
Q Consensus 257 ~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp--------------~~~~e~~g--~~~L~~l~~~ 320 (365)
|+|.|+...+.+ ...+++|.+...-.-+..+| .....|.+ ...+++||+.
T Consensus 179 GiI~N~r~~~~e--------------~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~TVie~~P~s~~a~~yr~LA~~ 244 (273)
T PF00142_consen 179 GIICNSRNVDDE--------------EEIVEDFAERIGTPIIAFIPRSEIVQRAELYGKTVIEAAPDSEQAQEYRELARK 244 (273)
T ss_dssp EEEEE-SSSTTH--------------HHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS-CCCC-TTSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCc--------------hHHHHHHHHHcCCcEEEecCchHHHHHHHHcCCEEEEeCCCcHHHHHHHHHHHH
Confidence 999995523321 22333333333222233333 33455655 4789999999
Q ss_pred hcCCCCC-CCCcchhhhhhh
Q 017873 321 FVTPYQP-STSRDTVEDLER 339 (365)
Q Consensus 321 l~~~~~~-~~~~~~~~~~~~ 339 (365)
++....+ .+..-..+++|.
T Consensus 245 I~~~~~~~~P~PL~~eeL~~ 264 (273)
T PF00142_consen 245 ILENPEPVIPKPLSDEELEE 264 (273)
T ss_dssp HHH----B------HHHHHH
T ss_pred HHhCCCCCCCCCCCHHHHHH
Confidence 8865433 233334444443
No 59
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.65 E-value=1.1e-16 Score=144.99 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=63.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcccCCCceeecCcCCceeeecCccccccccc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGS 106 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 106 (365)
+.|++.||||||||||+|.|+|.+|+++|+||.++|+|. ++|+..+++..... ... .++. +.....
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~--~~~---~gi~---Lp~p~~----- 67 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAW--AQR---DGIE---LPVPSH----- 67 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHH--HHH---HT---------EE-----
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchh--HHh---cCcc---cCCccc-----
Confidence 468899999999999999999999999999999999996 69999999865211 000 0110 000000
Q ss_pred ccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHH
Q 017873 107 TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTL 156 (365)
Q Consensus 107 ~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l 156 (365)
..+.. ....-...+......+.+++..+.. ++||||||||++.+.+
T Consensus 68 -~~L~~--~~~~v~~~~~~~~~~L~q~l~~l~~-~~DfLVID~PGtd~~l 113 (261)
T PF09140_consen 68 -FFLPP--DQASVWEGENVEDKRLEQALADLEG-DLDFLVIDTPGTDDRL 113 (261)
T ss_dssp -E-SSS--HHHHTTS-HHHHHHHHHHHHHHHHH-H-SEEEEEE-SSS-HH
T ss_pred -eeecc--cccccccCcchhHHHHHHHHHHHhc-CCCEEEEeCCCCCcHH
Confidence 00111 0001111222333577778887776 7999999999766543
No 60
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.64 E-value=2e-15 Score=121.11 Aligned_cols=38 Identities=42% Similarity=0.535 Sum_probs=36.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
|.|.|.|||+||||+|+++|..++++|.+|+++|+|++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 67999999999999999999999999999999999975
No 61
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.6e-14 Score=128.67 Aligned_cols=163 Identities=23% Similarity=0.356 Sum_probs=101.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccC------------------CCceeecCcC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT------------------KTPTLVNGFS 89 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~------------------~~~~~~~~~~ 89 (365)
++|+|. ||||.||||+++|+|.+||..|+||++|-|||.++.+..+-.... .+.....|+.
T Consensus 2 r~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~ 80 (278)
T COG1348 2 RQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFG 80 (278)
T ss_pred ceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCC
Confidence 345554 899999999999999999999999999999999877755532100 0111122233
Q ss_pred CceeeecCcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHH
Q 017873 90 NLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGL 169 (365)
Q Consensus 90 ~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l 169 (365)
|+.+.+. ..-.+...++-.|......+.+-+...++ ..|+|++|..... .
T Consensus 81 Gv~CVEs--------------GGPepGvGCAGRGVitai~~Le~lgaf~~-~~DvviyDVLGDV-----V---------- 130 (278)
T COG1348 81 GVKCVES--------------GGPEPGVGCAGRGVITAINLLEELGAFEE-DLDVVIYDVLGDV-----V---------- 130 (278)
T ss_pred ceEEeec--------------CCCCCCCCcccchHHHHHHHHHHhCCccc-cCCEEEEeccCce-----e----------
Confidence 3333322 00012334444555443333322222333 3699999976621 0
Q ss_pred HHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHH
Q 017873 170 DKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELT 249 (365)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~ 249 (365)
.+++.-|+ +.-....+++||+-+.+++..+.++.+.+.
T Consensus 131 ---------CGGFAmPi---------------------------------Reg~AdeiyIVtSge~MalYAANNI~kgi~ 168 (278)
T COG1348 131 ---------CGGFAMPI---------------------------------REGYADEIYIVTSGEMMALYAANNIAKGIR 168 (278)
T ss_pred ---------ecceeeeh---------------------------------hcccCcEEEEEecCchHHHHHHHHHHHHHH
Confidence 01111111 112246899999999999999998888877
Q ss_pred hC----CCCcCeEEEcCc
Q 017873 250 KF----EIDTHNIIINQV 263 (365)
Q Consensus 250 ~~----gi~v~~vVvN~~ 263 (365)
++ ++++.|+|.|.-
T Consensus 169 k~a~~~~~rLgGiIcNsr 186 (278)
T COG1348 169 KYAKTGGVRLGGIICNSR 186 (278)
T ss_pred HHhhcCCcceeeEEecCC
Confidence 54 588999999987
No 62
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.47 E-value=2.3e-12 Score=121.09 Aligned_cols=40 Identities=33% Similarity=0.340 Sum_probs=35.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+++.+.|++|+||||++++||.++++.|++|++||+|+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 4555555999999999999999999999999999999974
No 63
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.40 E-value=4.9e-12 Score=108.28 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=35.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
+.+.||||+||||++.+++..+...|.||+++|+|++.+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~ 40 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSP 40 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Confidence 456799999999999999999999999999999998654
No 64
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.39 E-value=2.3e-13 Score=116.92 Aligned_cols=50 Identities=34% Similarity=0.281 Sum_probs=40.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQR 77 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~ 77 (365)
+.|.|+|.+||+||||+|.++|..+|+.|++|++||+|.. +++..+++.+
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~ 51 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIE 51 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccc
Confidence 3577999999999999999999999999999999999976 5566666654
No 65
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.34 E-value=1.2e-10 Score=106.76 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=38.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
+.+++.+|||||||||+|+++|.+++.+|++|++||+||+.+
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~ 44 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNA 44 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 456788899999999999999999999999999999999864
No 66
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.33 E-value=8.4e-11 Score=102.97 Aligned_cols=45 Identities=27% Similarity=0.429 Sum_probs=38.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC-ChhhHh
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAF 74 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~-~l~~~~ 74 (365)
++++.|++|+||||++.++|..+++.|++|+++|+|+.. .....+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l 47 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQL 47 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHH
Confidence 567789999999999999999999999999999999864 333434
No 67
>PRK10867 signal recognition particle protein; Provisional
Probab=99.32 E-value=3.2e-11 Score=119.72 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=38.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHN 69 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~~~ 69 (365)
.+.+++++|.+|+||||++++||.++++. |++|++||+|+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 35678888999999999999999999988 99999999998754
No 68
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.32 E-value=5.7e-12 Score=103.33 Aligned_cols=99 Identities=27% Similarity=0.338 Sum_probs=64.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccccCc
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGM 110 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~ 110 (365)
++++||||+||||++.++|.+++++|++|+++|+|| .++...++......+.. +..... .+.+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~-~~~~~~~~~~~~~~~~~------i~~g~~---------~~~~- 64 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP-DDLPERLSVEVGEIKLL------LVMGMG---------RPGG- 64 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc-hhhHHHHhhccCCceEE------EEeccc---------ccCC-
Confidence 577899999999999999999999999999999999 66666666543211000 000000 0000
Q ss_pred cchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhH
Q 017873 111 DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHT 155 (365)
Q Consensus 111 ~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~ 155 (365)
..+..+. ...+.+++..+....|||+++||+++...
T Consensus 65 ------~g~~~~~---n~~~~~~l~~~~~~~~~~vivDt~ag~e~ 100 (116)
T cd02034 65 ------EGCYCPE---NALLNALLRHLVLTRDEQVVVDTEAGLEH 100 (116)
T ss_pred ------CCCEehh---hHHHHHHHHHeEccCCCEEEEecHHHHHH
Confidence 0111111 11566777775333799999999998764
No 69
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.30 E-value=2.3e-10 Score=109.82 Aligned_cols=42 Identities=29% Similarity=0.261 Sum_probs=36.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
..++.+.|.+|+||||++++||..++..|++|+|+|+|+...
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA 155 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence 356666689999999999999999999999999999998643
No 70
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.29 E-value=3.3e-11 Score=104.85 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=34.2
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEc
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN 261 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN 261 (365)
.+++|+.+....+.++....+.|++.|+++.|+|+|
T Consensus 131 ~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 131 PVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 579999999999999999999999999999999998
No 71
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.27 E-value=9.4e-11 Score=116.37 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=38.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHN 69 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~~~ 69 (365)
.+.+++++|.+|+||||++++||.++. +.|++|++||+|+...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 357889999999999999999999987 6899999999997644
No 72
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.24 E-value=2.3e-10 Score=113.19 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=38.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
..++.+.|.+|+||||+++.||.++++.|++|+||++|+...
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 568888899999999999999999999999999999998753
No 73
>PRK13768 GTPase; Provisional
Probab=99.24 E-value=1.3e-09 Score=101.55 Aligned_cols=43 Identities=40% Similarity=0.444 Sum_probs=39.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
++.+++++|+||+||||++.+++.+++..|++|++||+||+.+
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~ 43 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVE 43 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccc
Confidence 3568888999999999999999999999999999999999754
No 74
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.20 E-value=3.4e-10 Score=112.67 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=45.7
Q ss_pred hhhcchhhHHhhhcC--------CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 11 ELEIPEGSVRNILEQ--------DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 11 ~~~~~~~~l~~~~~~--------~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
-++.++..|..++.. ..+.++++.|.+|+||||++++||.++.+.|++|++|++|+...
T Consensus 70 ~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 70 VIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred HHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 344555555555542 23567777799999999999999999999999999999997533
No 75
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.17 E-value=4.5e-10 Score=107.68 Aligned_cols=173 Identities=20% Similarity=0.221 Sum_probs=104.9
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcC-CceeeecCcccc
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFS-NLYAMEVDPSVE 101 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~~~ 101 (365)
++++.+.|++.|||+|-||+|.|+|+.++ +.+..|+|+|+|.+ ++-.-+|+......-....-.+ -|....+| .
T Consensus 102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld---~ 178 (366)
T COG4963 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLD---S 178 (366)
T ss_pred hhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHH---H
Confidence 45677889999999999999999999999 56899999999966 4444555544221100000000 00000000 0
Q ss_pred cccccccCccchhHHhhhcCCCHHH-----HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHH
Q 017873 102 EETGSTEGMDSLFSELANAIPGIDE-----AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK 176 (365)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~pg~~~-----~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~ 176 (365)
.......++.- .....+... ...+..+++.++. .||+||||.|-... .|..+
T Consensus 179 ~~~~~~~~l~l-----l~a~~~~~~~~d~~~~~~~~Ll~~~~~-~~~~vV~Dlp~~~~------------~~t~~----- 235 (366)
T COG4963 179 LLTRLASGLKL-----LAAPTELAKNYDLKTGAVERLLDLLRG-SFDFVVVDLPNIWT------------DWTRQ----- 235 (366)
T ss_pred HHhccCCCcee-----ecCCcchhhhcccccchHHHHHHHhhc-cCCeEEEcCCCccc------------hHHHH-----
Confidence 00001111110 000011111 1356777887777 79999999994211 12111
Q ss_pred HhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCC--C
Q 017873 177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI--D 254 (365)
Q Consensus 177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi--~ 254 (365)
.|.. .+.+++|+.|+..+++.+++++..|++... +
T Consensus 236 -----------------------------------------vL~~--Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~ 272 (366)
T COG4963 236 -----------------------------------------VLSG--SDEIVIVAEPSLASLRNAKELLDELKRLRPNDP 272 (366)
T ss_pred -----------------------------------------HHhc--CCeEEEEecccHHHHHHHHHHHHHHHHhCCCCC
Confidence 1211 368999999999999999999999998765 4
Q ss_pred cCeEEEcCccCC
Q 017873 255 THNIIINQVLYD 266 (365)
Q Consensus 255 v~~vVvN~~~~~ 266 (365)
....|+|++..+
T Consensus 273 ~p~lv~n~~~~~ 284 (366)
T COG4963 273 KPILVLNRVGVP 284 (366)
T ss_pred CceEEeeecCCC
Confidence 456899999533
No 76
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.16 E-value=3.7e-10 Score=88.04 Aligned_cols=34 Identities=47% Similarity=0.624 Sum_probs=31.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
+++++|++|+||||++.++|..+++.|++|+++|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 3577888899999999999999999999999999
No 77
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.09 E-value=2.8e-09 Score=103.64 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=36.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
+++.+.|.+|+||||+++.||..+..+|++|+++++|+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 5667778899999999999999999999999999999875
No 78
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.08 E-value=2.8e-09 Score=103.35 Aligned_cols=59 Identities=24% Similarity=0.174 Sum_probs=43.8
Q ss_pred hhhcchhhHHhhhc------CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 11 ELEIPEGSVRNILE------QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 11 ~~~~~~~~l~~~~~------~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
..+.+.+.|..++. ....+++.+.|..|+||||+++.+|..+..+|++|.+|++|+...
T Consensus 183 v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 183 ITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred HHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 34444444554443 123456666677899999999999999999999999999998754
No 79
>PRK14974 cell division protein FtsY; Provisional
Probab=99.04 E-value=5.1e-09 Score=101.00 Aligned_cols=40 Identities=30% Similarity=0.269 Sum_probs=37.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
..++++.|.+|+||||+++++|.++...|++|+++++|..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 5688888999999999999999999999999999999964
No 80
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.00 E-value=4.2e-08 Score=89.42 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=49.2
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEE-EecCC
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHIT-KLPLL 304 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~-~vp~~ 304 (365)
.+++|+.++..++..+...++.++..|+++.|+|+|++ .+.. ...+....+.+.+.+. .+++ .+|.+
T Consensus 135 pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~-~~~~----------~~~~~~~~~~l~~~~g-i~vlg~ip~~ 202 (222)
T PRK00090 135 PVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGI-PPEP----------GLRHAENLATLERLLP-APLLGELPYL 202 (222)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccC-CCcc----------hhHHHHHHHHHHHHcC-CCeEEecCCC
Confidence 57899999988999999999999999999999999998 3320 0122334556666554 4544 57876
Q ss_pred C
Q 017873 305 P 305 (365)
Q Consensus 305 ~ 305 (365)
.
T Consensus 203 ~ 203 (222)
T PRK00090 203 A 203 (222)
T ss_pred C
Confidence 3
No 81
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.96 E-value=1.8e-08 Score=99.13 Aligned_cols=44 Identities=32% Similarity=0.293 Sum_probs=37.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH-HHCCCCEEEEeCCCCCChh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILL-AEVRPSVLIISTDPAHNLS 71 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~l-a~~G~rVLLiD~D~~~~l~ 71 (365)
..++++.|.+|+||||++++||..+ ...|++|+++|+|++...+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA 267 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA 267 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence 4577788999999999999999876 5789999999999876543
No 82
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.95 E-value=1.4e-08 Score=102.21 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCCCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAHN 69 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D~~~~ 69 (365)
.++.+.|.+|+||||++++||..++.. |++|.+|++|+...
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 344455889999999999999998865 58999999998643
No 83
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=98.94 E-value=4.8e-10 Score=84.88 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=36.1
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHH
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRA 277 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~ 277 (365)
+++++||+|...|..+++|.+..+++.++|+.|+|.|+.. ..|+.|..
T Consensus 26 ~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~-----~~Cp~Cg~ 73 (81)
T PF10609_consen 26 DGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSY-----FVCPHCGE 73 (81)
T ss_dssp SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-E-----EE-TTT--
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCc-----cCCCCCCC
Confidence 5899999999999999999999999999999999999994 34555543
No 84
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.92 E-value=1.7e-07 Score=89.52 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=38.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l 70 (365)
...++.++|++|+||||++.+++..+...|++|.+|++|+....
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~ 76 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF 76 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 34566666999999999999999999999999999999987654
No 85
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.91 E-value=2.6e-08 Score=89.20 Aligned_cols=39 Identities=36% Similarity=0.347 Sum_probs=33.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+++++-|-.||||||+++-||..+..+|++|.+|.+|..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 567777899999999999999999988999999999965
No 86
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.87 E-value=2.6e-08 Score=99.39 Aligned_cols=40 Identities=33% Similarity=0.294 Sum_probs=34.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCEEEEeCCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAH 68 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la--~~G~rVLLiD~D~~~ 68 (365)
.++++.|++||||||++++||..++ ..|++|++||+|++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 3566668999999999999999998 457999999999874
No 87
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.84 E-value=1.4e-07 Score=87.90 Aligned_cols=112 Identities=20% Similarity=0.320 Sum_probs=72.5
Q ss_pred HHhhhcCCCe-EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh--hHhhcccCCCceeecCcCCceeee
Q 017873 19 VRNILEQDSL-KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS--DAFQQRFTKTPTLVNGFSNLYAME 95 (365)
Q Consensus 19 l~~~~~~~~~-~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~~ 95 (365)
|+.+....+. .++=++|-||+||||+.-.|...|.++|+||.++..||....+ .++|....-..... -+|+++..
T Consensus 41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~--~~~vFiRs 118 (323)
T COG1703 41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAV--DPGVFIRS 118 (323)
T ss_pred HHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhcc--CCCeEEee
Confidence 4444443333 4677779999999999999999999999999999999875543 55554432111111 14554433
Q ss_pred cCcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCh
Q 017873 96 VDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTG 153 (365)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~ 153 (365)
+.. .....|.. ......+..++...||+|||-|-..+
T Consensus 119 ~~s-------------------rG~lGGlS--~at~~~i~~ldAaG~DvIIVETVGvG 155 (323)
T COG1703 119 SPS-------------------RGTLGGLS--RATREAIKLLDAAGYDVIIVETVGVG 155 (323)
T ss_pred cCC-------------------Cccchhhh--HHHHHHHHHHHhcCCCEEEEEecCCC
Confidence 200 00112222 25566777777778999999998754
No 88
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.77 E-value=2.3e-07 Score=90.51 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=37.8
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+.+.++++-|=-|.||||+++-||.+|.++|+||+||.||..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~ 139 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTY 139 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccC
Confidence 345677888999999999999999999999999999999954
No 89
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.75 E-value=1.2e-07 Score=93.21 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=36.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH----CCCCEEEEeCCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTDPAH 68 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~----~G~rVLLiD~D~~~ 68 (365)
...++++.|+.||||||+++.+|..+.. .|++|++|++|+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 3467788899999999999999998873 58999999999853
No 90
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.74 E-value=1.8e-07 Score=88.56 Aligned_cols=40 Identities=33% Similarity=0.353 Sum_probs=36.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+.++.+-|-.|+||||+.+-||.++.+.|++|+|.-+|.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DT 177 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDT 177 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecch
Confidence 3566777799999999999999999999999999999994
No 91
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.71 E-value=7e-07 Score=75.04 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=36.4
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCcc
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~ 264 (365)
.+++|++|+..++.++...++.++..|+++.+++.|+..
T Consensus 70 ~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~ 108 (134)
T cd03109 70 PAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIV 108 (134)
T ss_pred CEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCC
Confidence 479999999999999999999999999999999999983
No 92
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.68 E-value=2.1e-06 Score=82.86 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l 70 (365)
+...++-++|.+|+||||++..++..+...|++|.++..||+...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~ 98 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR 98 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence 345677888999999999999999999999999999999998654
No 93
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.68 E-value=5.2e-08 Score=92.24 Aligned_cols=41 Identities=29% Similarity=0.258 Sum_probs=35.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHC-C-CCEEEEeCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPAH 68 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~-G-~rVLLiD~D~~~ 68 (365)
..++.+.|.+||||||+++.||.+++.. | ++|.+|++|+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 3466666899999999999999999976 5 999999999864
No 94
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.62 E-value=1.3e-06 Score=88.16 Aligned_cols=41 Identities=24% Similarity=0.156 Sum_probs=36.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++.+++++.++|+||||++++|+.+|+++|++|..+...|.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd 43 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD 43 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCC
Confidence 45688888899999999999999999999999999988654
No 95
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.59 E-value=1.3e-06 Score=81.88 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=35.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
..+.+.|++|+||||+...+|..+...|++|.++++|+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3555668899999999999999999889999999999764
No 96
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.50 E-value=1.5e-05 Score=73.60 Aligned_cols=41 Identities=32% Similarity=0.378 Sum_probs=37.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.++++-|-.|+||||+.--|-.++...+.+--+|.+||+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPA 58 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPA 58 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHH
Confidence 45677888999999999999999999999999999999986
No 97
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.46 E-value=9.3e-07 Score=81.38 Aligned_cols=102 Identities=17% Similarity=0.307 Sum_probs=59.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh--hHhhcccCCCceeecCcCCceeeecCccccccccc
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS--DAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGS 106 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 106 (365)
.++=++|.+|+||||+.-.|+..+.+.|+||.++..||....+ .++|....-... ..-+|+++...-..
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~--~~d~~vfIRS~atR------- 100 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQEL--SRDPGVFIRSMATR------- 100 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHH--HTSTTEEEEEE----------
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCc--CCCCCEEEeecCcC-------
Confidence 4566689999999999999999999999999999999874443 444533211000 01134443322000
Q ss_pred ccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCh
Q 017873 107 TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTG 153 (365)
Q Consensus 107 ~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~ 153 (365)
..+ -|+. ......+..++...||+|||-|-..+
T Consensus 101 -G~l-----------GGls--~~t~~~v~ll~aaG~D~IiiETVGvG 133 (266)
T PF03308_consen 101 -GSL-----------GGLS--RATRDAVRLLDAAGFDVIIIETVGVG 133 (266)
T ss_dssp -SSH-----------HHHH--HHHHHHHHHHHHTT-SEEEEEEESSS
T ss_pred -CCC-----------CCcc--HhHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 000 1111 24556777777778999999998844
No 98
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.44 E-value=4.3e-06 Score=88.10 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=34.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH-HCC-CCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la-~~G-~rVLLiD~D~~ 67 (365)
.|+.+-|..||||||+.+.||..+. ..| ++|.++++|..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~ 226 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSF 226 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCccc
Confidence 5777779999999999999999885 566 69999999965
No 99
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=4.5e-06 Score=80.18 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=40.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQ 76 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~ 76 (365)
.+.++++-|=-|+||||+++-+|.++.++|+||+||-+|. ++...+.+..
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkq 150 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQ 150 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHH
Confidence 3457777788999999999999999999999999999994 3444455544
No 100
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=4.7e-06 Score=81.90 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=98.7
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC-hhhHhhcccCCCceeecCcCCceeeecCcccccc
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN-LSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE 103 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 103 (365)
++.+.++.+.|-.||||||-=+-+|.||-+.+.|||+.-||+-.+ .-.-+++.. .+|....
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv----------~rl~~l~-------- 436 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHV----------ERLSALH-------- 436 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHH----------HHHHHhc--------
Confidence 445557777899999999999999999999999999999996533 222233221 1111000
Q ss_pred cccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhH
Q 017873 104 TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183 (365)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~ 183 (365)
..-+ .+....-|-+........+.+.+...||+|+|||++..|.-.-| +
T Consensus 437 ---~~~v-----~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~l-----------------------m 485 (587)
T KOG0781|consen 437 ---GTMV-----ELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPL-----------------------M 485 (587)
T ss_pred ---cchh-----HHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhH-----------------------H
Confidence 0000 11111122233345556677777768999999999977643322 2
Q ss_pred HHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecC--CcchHHHHHHHHHHHHhCC--CCcCeEE
Q 017873 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIP--EFLSLYETERLVQELTKFE--IDTHNII 259 (365)
Q Consensus 184 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p--~~~s~~et~~~~~~L~~~g--i~v~~vV 259 (365)
.++++++.. .-| +.+++|..+ ...++..+..+-+.|..+. -.++|++
T Consensus 486 ~~l~k~~~~---------------------------~~p--d~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ 536 (587)
T KOG0781|consen 486 TSLAKLIKV---------------------------NKP--DLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGIL 536 (587)
T ss_pred HHHHHHHhc---------------------------CCC--ceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEE
Confidence 222222221 113 355666543 5667788888888887665 3478999
Q ss_pred EcCc
Q 017873 260 INQV 263 (365)
Q Consensus 260 vN~~ 263 (365)
+.++
T Consensus 537 ltk~ 540 (587)
T KOG0781|consen 537 LTKF 540 (587)
T ss_pred EEec
Confidence 9988
No 101
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.36 E-value=7.4e-06 Score=86.75 Aligned_cols=36 Identities=22% Similarity=0.062 Sum_probs=31.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
+.+.+++...|+|||+++..|+.+|.++|+||..+=
T Consensus 3 k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 3 RSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 356677778999999999999999999999999876
No 102
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.32 E-value=4.6e-05 Score=70.01 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=48.1
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCC
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLL 304 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~ 304 (365)
..+++|+....-.+..+.-..+.++..|+++.|+|+|++ .+... ......+.+.+......+..+|+.
T Consensus 136 ~pvilV~~~~lg~in~~lLt~~~l~~~~~~~~gvV~N~~-~~~~~-----------~~~~~~~~l~~~~~~~~lg~iP~~ 203 (231)
T PRK12374 136 LPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRI-NPGLA-----------HYAEIIDVLGKKLPAPLIGELPYL 203 (231)
T ss_pred CCEEEEECCCcChHHHHHHHHHHHHhCCCcEEEEEEeCc-cCchh-----------hhhhHHHHHHHhcCCCEEEEeCCC
Confidence 457889877777799999999999999999999999999 44310 011122334443333456678887
Q ss_pred CC
Q 017873 305 PE 306 (365)
Q Consensus 305 ~~ 306 (365)
+.
T Consensus 204 ~~ 205 (231)
T PRK12374 204 PR 205 (231)
T ss_pred CC
Confidence 44
No 103
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.32 E-value=2.2e-05 Score=71.34 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=38.0
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCC
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD 267 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~ 267 (365)
.+++|+...--+++.|.-.++.++..|+++.|+|+|+. .+.
T Consensus 138 pvILV~~~~LGtINHtlLt~eal~~~gl~l~G~I~n~~-~~~ 178 (223)
T COG0132 138 PVILVVGIKLGTINHTLLTVEALRARGLPLAGWVANGI-NPE 178 (223)
T ss_pred CEEEEecCCccHHHHHHHHHHHHHHCCCCEEEEEEccC-CCc
Confidence 47999999999999999999999999999999999999 444
No 104
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.31 E-value=1.1e-05 Score=72.27 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=35.2
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|+....-++.++...++.++..|+++.|+|+|++
T Consensus 130 a~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~ 168 (199)
T PF13500_consen 130 APVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNRV 168 (199)
T ss_dssp -EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEEC
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 368999999999999999999999999999999999998
No 105
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.27 E-value=2.6e-05 Score=71.96 Aligned_cols=36 Identities=39% Similarity=0.412 Sum_probs=29.0
Q ss_pred eCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 34 GGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 34 sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
-|..|+||||.+.++..++...|++|.+|.+||+..
T Consensus 2 iGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 2 IGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVE 37 (238)
T ss_dssp EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S
T ss_pred CCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhc
Confidence 478999999999999999999999999999999844
No 106
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=2.6e-05 Score=76.30 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH-HCC-CCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la-~~G-~rVLLiD~D~~ 67 (365)
.++.+.|..||||||+++.||..+. +.| ++|.+|++|..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 4677889999999999999999887 457 69999999975
No 107
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.25 E-value=1.3e-05 Score=78.31 Aligned_cols=39 Identities=33% Similarity=0.397 Sum_probs=33.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la--~~G~rVLLiD~D~ 66 (365)
.+++..-|..||||||+-|-||..+. ...+||.+|.+|.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 56776778999999999999999999 4457999999994
No 108
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.24 E-value=5.5e-06 Score=77.99 Aligned_cols=39 Identities=23% Similarity=0.089 Sum_probs=33.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
+++-+.|.+|+||||++.+|+..|+++| +|.+|+.|+.+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~ 40 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTE 40 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCC
Confidence 4555556569999999999999999999 89999999843
No 109
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.20 E-value=2.2e-05 Score=79.21 Aligned_cols=39 Identities=28% Similarity=0.304 Sum_probs=33.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH-HCC-CCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la-~~G-~rVLLiD~D~~ 67 (365)
.|+.+-|..||||||+++.||..+. +.| ++|.+|++|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~ 297 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY 297 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 5777779999999999999999886 566 59999999985
No 110
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.16 E-value=2e-05 Score=71.42 Aligned_cols=52 Identities=23% Similarity=0.178 Sum_probs=44.0
Q ss_pred hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
+.|+.++.++ .-.++.++|.+|+||||++.++|..++..|.+|+.+|++...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 5688888642 346788899999999999999999999999999999998543
No 111
>PRK00784 cobyric acid synthase; Provisional
Probab=98.09 E-value=0.00018 Score=73.37 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=30.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEE
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLi 62 (365)
+.+.+++-..|||||++++.|+.+|.++|++|..+
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~ 37 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPF 37 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecc
Confidence 45667777899999999999999999999988865
No 112
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.00 E-value=0.00016 Score=70.92 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=30.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+|++.+...|+||||+|..|..+|+++|.+|=-+=.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKv 37 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKV 37 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccccc
Confidence 567777799999999999999999999988754443
No 113
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.99 E-value=6.2e-05 Score=68.62 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=44.3
Q ss_pred cchhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 14 IPEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 14 ~~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.=.+.|+.++.++ .-.++.++|.+|+|||+++.++|...+..|.+|+.||++
T Consensus 7 tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 7 TGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3345688888653 235888899999999999999999999999999999999
No 114
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.95 E-value=4.4e-05 Score=67.14 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=35.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++++.|.+|+|||+++..++...++.|.+|++++++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 36788999999999999999999999999999999854
No 115
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.95 E-value=7.6e-05 Score=67.14 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=40.0
Q ss_pred HHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 19 VRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 19 l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|+.++.++ .-.++.+.|.+|+|||+++..++...+..|.+|+.||++.
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34555543 2357788899999999999999999999999999999985
No 116
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.94 E-value=0.0002 Score=72.38 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=42.2
Q ss_pred EEEEeecCCcchHHHHHH----HHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEe
Q 017873 226 TFVCVCIPEFLSLYETER----LVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKL 301 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~----~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~v 301 (365)
.+++|+.....++..+.. +.+.|+..++++.|||+|++. +. .+...++++.+. .++|++-+
T Consensus 352 PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~-~~-------------~~~~~~~~~le~-~gvpVLG~ 416 (476)
T PRK06278 352 PVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVY-NM-------------EIFEKVKKIAEN-SNINLIGV 416 (476)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCC-cH-------------HHHHHHHHHHHh-cCCCEEEe
Confidence 479999998888655544 345666779999999999993 21 123344444444 46777766
Q ss_pred cC
Q 017873 302 PL 303 (365)
Q Consensus 302 p~ 303 (365)
|.
T Consensus 417 ~~ 418 (476)
T PRK06278 417 GK 418 (476)
T ss_pred cc
Confidence 54
No 117
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.92 E-value=0.00021 Score=63.69 Aligned_cols=38 Identities=34% Similarity=0.404 Sum_probs=35.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
.++-|..|+||||.+.++-.+.-..|+++-+|.+||+.
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAa 43 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAA 43 (273)
T ss_pred EEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHH
Confidence 48889999999999999999999999999999999974
No 118
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.92 E-value=0.00019 Score=65.84 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=43.4
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.+++++ ...++.+.|..|+|||+++.+++...+++|.+|+.++++..
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 45688888753 23477777999999999999999998889999999999854
No 119
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.91 E-value=0.00035 Score=65.35 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=36.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.++.++|.+|+|||+++..+|...+++|.+|+.++++..
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 577889999999999999999999999999999999953
No 120
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.89 E-value=4.7e-05 Score=73.10 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=45.5
Q ss_pred hhcchhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 12 LEIPEGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 12 ~~~~~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+.+=.+.|+.++. ++ .-+++.+.|..|+||||++.+++...++.|.+|+.||+...
T Consensus 36 i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~ 94 (321)
T TIGR02012 36 ISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA 94 (321)
T ss_pred ecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch
Confidence 3344557999987 42 22577888999999999999999999999999999999854
No 121
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.89 E-value=0.00058 Score=68.96 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=31.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+++++...|+|||+++++|+.+|+++|++|..+=.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 56777799999999999999999999999998854
No 122
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.86 E-value=0.0003 Score=71.49 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=29.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.+++--.+||||++++.|+..+.++|++|..+=.
T Consensus 2 ~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 2 MVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 4555678899999999999999999999986543
No 123
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.83 E-value=0.0002 Score=72.99 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=45.6
Q ss_pred cchhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 14 IPEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 14 ~~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.=.+.|+.++.++ .-.+++++|.+|+||||++..++...+++|.+|+.+.++..
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES 302 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 3345688888763 22478999999999999999999999999999999999965
No 124
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.82 E-value=5.9e-05 Score=68.20 Aligned_cols=37 Identities=32% Similarity=0.492 Sum_probs=34.6
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 32 ~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
++-|.+|+||||-.......++..|++|.+|.+||+.
T Consensus 6 vVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN 42 (290)
T KOG1533|consen 6 VVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN 42 (290)
T ss_pred EEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc
Confidence 5679999999999999999999999999999999973
No 125
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.82 E-value=7.2e-05 Score=71.91 Aligned_cols=58 Identities=17% Similarity=0.062 Sum_probs=46.5
Q ss_pred hhhcchhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 11 ELEIPEGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 11 ~~~~~~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
-+.+=.+.|+.++. ++ .-+|+.+.|.+|+||||++.+++...++.|.+|+.||+....
T Consensus 35 ~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~ 95 (325)
T cd00983 35 VIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHAL 95 (325)
T ss_pred eecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccH
Confidence 34444557898887 42 235777889999999999999999999999999999997543
No 126
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.79 E-value=0.00015 Score=66.10 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=40.2
Q ss_pred hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873 17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (365)
Q Consensus 17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~ 67 (365)
+.|+.++.++ ...++.+.|.+|+|||+++..++...++. |.+|+.|.++..
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 4678888543 22477888999999999999999999988 999999999954
No 127
>PRK09354 recA recombinase A; Provisional
Probab=97.73 E-value=0.00011 Score=71.27 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=47.8
Q ss_pred hhhhcchhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 10 QELEIPEGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 10 ~~~~~~~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
+-+.+=.+.|+.++. ++ .-+|+.+.|..|+||||++..++...++.|.+|+.||+....+
T Consensus 39 ~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 39 EVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 101 (349)
T ss_pred ceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH
Confidence 334444567999987 43 2357788899999999999999999999999999999985543
No 128
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.71 E-value=0.00076 Score=67.46 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=32.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++...|+||||+++.|+.+|.++|.+|--+=..|
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gp 40 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGP 40 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCC
Confidence 57777779999999999999999999999986665433
No 129
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=97.70 E-value=4.6e-05 Score=77.02 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=54.5
Q ss_pred hhhhhhhcchhhHHhhh-----cC-CCeEEEEEeCCC---CCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873 7 DQDQELEIPEGSVRNIL-----EQ-DSLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 7 ~~~~~~~~~~~~l~~~~-----~~-~~~~i~~~sgKG---GvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
+.-|.|...+.++.... ++ .++.|+++|..+ |+||||+|+|||..|++.|+||+++ =.+++++..|+.+
T Consensus 29 ~~~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli--LR~Psl~~~fg~k 106 (557)
T PRK13505 29 DDLEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA--LREPSLGPVFGIK 106 (557)
T ss_pred HHHHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE--EecCCcccccCCC
Confidence 34566777777664332 12 356778999888 9999999999999999999999999 4458898888776
Q ss_pred c
Q 017873 78 F 78 (365)
Q Consensus 78 ~ 78 (365)
.
T Consensus 107 g 107 (557)
T PRK13505 107 G 107 (557)
T ss_pred C
Confidence 3
No 130
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.69 E-value=0.00021 Score=69.64 Aligned_cols=39 Identities=31% Similarity=0.273 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
-++++-|--++||||+++-||-.+-.+|++|.+||+|+.
T Consensus 74 ~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvG 112 (398)
T COG1341 74 GVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVG 112 (398)
T ss_pred cEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCC
Confidence 345555666799999999999999999999999999975
No 131
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.68 E-value=0.0006 Score=62.37 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=41.0
Q ss_pred hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCCCC
Q 017873 17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHN 69 (365)
Q Consensus 17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~~~ 69 (365)
+.|+.++.++ .-.++.+.|.+|+|||+++.+++...... +.+|+.||++...+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~ 66 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFR 66 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcC
Confidence 4577777642 23577888999999999999999876544 47999999987533
No 132
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.65 E-value=0.00071 Score=57.29 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=35.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
+++.|++|+||||++..++..++..|.+|++++++...+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 567899999999999999999999999999999996643
No 133
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00095 Score=66.43 Aligned_cols=39 Identities=28% Similarity=0.279 Sum_probs=31.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH-HCC-CCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la-~~G-~rVLLiD~D~~ 67 (365)
.++.+-|..|+||||+.+-||..+. ..| .++.++-+|..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ 232 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSY 232 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 4666779999999999999998654 334 78899988863
No 134
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.65 E-value=0.00033 Score=64.38 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=41.5
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
..+|+.++... ...++.+.|..|+||||++..++..+++.|.+++.++++..
T Consensus 10 ~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~ 63 (230)
T PRK08533 10 RDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT 63 (230)
T ss_pred EeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 34556665531 23477888999999999999999999999999999998854
No 135
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.63 E-value=0.0013 Score=59.78 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=42.0
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCC------CCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVR------PSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G------~rVLLiD~D~~ 67 (365)
.+.|+.++.++ .-.++.+.|.+|+|||+++..+|...+..| .+|+.||++..
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 35677777642 235777889999999999999999988777 89999999864
No 136
>PRK04328 hypothetical protein; Provisional
Probab=97.60 E-value=0.0015 Score=60.78 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=43.9
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
.+.|+.++.++ .-.++.+.|.+|+|||+++..++...++.|.+++.|+++..+
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHP 63 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCH
Confidence 34688888753 235778889999999999999999988899999999998643
No 137
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.59 E-value=0.0014 Score=60.29 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=43.6
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.++ .-.++.++|.+|+|||+++..++...++.|.+|+.++++..
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 35688877653 23578889999999999999999998899999999999964
No 138
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.53 E-value=0.00083 Score=66.06 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=43.7
Q ss_pred chhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 15 PEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 15 ~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
=.+.|++++.++ .-.+++++|.+|+||||++..+|..++..|.+|+.+++...
T Consensus 67 Gi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 67 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES 121 (372)
T ss_pred CCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence 345678888642 23578899999999999999999999999999999999754
No 139
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.49 E-value=0.0015 Score=67.15 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=44.3
Q ss_pred hhcchhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 12 LEIPEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 12 ~~~~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+..=.+.|+.++.++ ...++.++|..|+|||+++.+++...++.|.+|+.|+++..
T Consensus 255 ~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~ 312 (509)
T PRK09302 255 ISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEES 312 (509)
T ss_pred ccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 334455688888643 12356668999999999999999999999999999999854
No 140
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=97.48 E-value=0.031 Score=60.41 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=51.4
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLP 305 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~ 305 (365)
-+++|+.+.--.++.|.-.++.|+..|+++.|||+|... .+ . ..++++... .++|++.+|..+
T Consensus 216 PvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~-~~---N-----------~~~l~~~~~--~~~pv~~lp~~p 278 (817)
T PLN02974 216 PAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG-LS---N-----------EKALLSYLS--NRVPVFVLPPVP 278 (817)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc-cc---h-----------HHHHHHHHh--cCCcEEeCCCCC
Confidence 479999999999999999999999999999999999752 11 1 112222221 278999999887
Q ss_pred CCCCC
Q 017873 306 EEVTG 310 (365)
Q Consensus 306 ~e~~g 310 (365)
..+..
T Consensus 279 ~~~~~ 283 (817)
T PLN02974 279 EDPGD 283 (817)
T ss_pred CCcch
Confidence 77643
No 141
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0017 Score=63.53 Aligned_cols=113 Identities=18% Similarity=0.255 Sum_probs=76.6
Q ss_pred chhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCce
Q 017873 15 PEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY 92 (365)
Q Consensus 15 ~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~ 92 (365)
-...|++.+.++ .--++.++|-+|+||||+-..+|..+|.++ +||.|..........+-...++.. .++++
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~------~~~l~ 150 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLP------TNNLY 150 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCC------ccceE
Confidence 344577777652 234788999999999999999999999998 999999997655443333322210 02332
Q ss_pred eeecCcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHH
Q 017873 93 AMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTL 165 (365)
Q Consensus 93 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l 165 (365)
... ...++.+...+.+.++|+||||+=-+..+-.+-+.|-..
T Consensus 151 l~a-------------------------------Et~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsV 192 (456)
T COG1066 151 LLA-------------------------------ETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSV 192 (456)
T ss_pred Eeh-------------------------------hcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcH
Confidence 211 014666777777778999999987776655555555544
No 142
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00017 Score=62.77 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=41.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC-CCCChhhHhh
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD-PAHNLSDAFQ 75 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D-~~~~l~~~~~ 75 (365)
....++.++|-.|+||||+|.+|...|..+|++|-++|.| -++.|+.-+|
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg 71 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG 71 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC
Confidence 3446788889999999999999999999999999999999 3455654444
No 143
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.46 E-value=0.00086 Score=67.74 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=43.2
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|++++.++ .-.+++++|.+|+||||++..+|..+++.|.+|+.++++..
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES 133 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence 34578887642 23578899999999999999999999999999999999854
No 144
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.45 E-value=0.0011 Score=66.89 Aligned_cols=52 Identities=27% Similarity=0.382 Sum_probs=43.3
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.++ .-.+++++|.+|+||||++..+|..+++.|.+|+.+++...
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES 119 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence 34578888653 23478899999999999999999999988999999999754
No 145
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.42 E-value=0.001 Score=62.07 Aligned_cols=51 Identities=25% Similarity=0.234 Sum_probs=43.9
Q ss_pred hhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 17 GSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 17 ~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+.|+.++.+ ....++.++|.+|+|||+++.+++...++.|.+|+.|.++..
T Consensus 10 ~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 10 PGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred cchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 457777774 344688889999999999999999999999999999999965
No 146
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.40 E-value=0.0011 Score=60.47 Aligned_cols=51 Identities=22% Similarity=0.151 Sum_probs=42.2
Q ss_pred hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+.|+.++.++ ...++.+.|..|+|||+++..++...++.|++|+.++++..
T Consensus 3 ~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 3 PGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred hhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 4677877643 23467778899999999999999998889999999999864
No 147
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.39 E-value=0.0012 Score=54.25 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=32.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHC-----CCCEEEEeCCCCCChh
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-----RPSVLIISTDPAHNLS 71 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~-----G~rVLLiD~D~~~~l~ 71 (365)
...++++.|..|+|||+++.+++..+... ..+|+.+++....+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPR 52 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHH
Confidence 45678999999999999999999999864 5678887776554433
No 148
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.37 E-value=0.00026 Score=60.90 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=34.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++.++|-.|+||||+|..|...|...|.+|.++|.|
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 5778899999999999999999999999999999999
No 149
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.37 E-value=0.0013 Score=63.32 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=44.0
Q ss_pred hhcchhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCCCC
Q 017873 12 LEIPEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHN 69 (365)
Q Consensus 12 ~~~~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~~~ 69 (365)
+....+.++.++.++ ...++.++|.+|+|||+++..+|...+.. +.+|+.||++...+
T Consensus 84 ~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~ 149 (317)
T PRK04301 84 ITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFR 149 (317)
T ss_pred cCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcC
Confidence 334456788888753 34577888999999999999999887643 35899999996433
No 150
>PRK07667 uridine kinase; Provisional
Probab=97.35 E-value=0.0004 Score=61.93 Aligned_cols=40 Identities=20% Similarity=0.097 Sum_probs=36.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+.++.++|-+|+||||+|..|+..+...|.+|.++++|.
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 4467889999999999999999999999999999999995
No 151
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.34 E-value=0.0014 Score=62.99 Aligned_cols=54 Identities=24% Similarity=0.172 Sum_probs=41.6
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHN 69 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~~~ 69 (365)
.+.|+.++.++ ...|+-+.|..|+|||+++..+|...+. .|.+|+.||+....+
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~ 143 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFR 143 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCC
Confidence 34588888752 3357888899999999999999986552 357999999986533
No 152
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.34 E-value=0.00033 Score=70.19 Aligned_cols=51 Identities=20% Similarity=0.092 Sum_probs=43.8
Q ss_pred CCeEEEEEeCCC---CCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhccc
Q 017873 26 DSLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF 78 (365)
Q Consensus 26 ~~~~i~~~sgKG---GvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~ 78 (365)
.++.|.++|--+ |+||||+|++||..|++.|+||+++ =.+++++..||.+.
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~--LR~PSlg~~fg~kg 90 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC--LREPSLGPTFGIKG 90 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE--EecCCcCcccCCCC
Confidence 356677999888 9999999999999999999999988 44588888888764
No 153
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.33 E-value=0.00095 Score=70.94 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=47.1
Q ss_pred hhhcchhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 11 ELEIPEGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 11 ~~~~~~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
-+..=.+.|+.++. ++ .-.++.+.|..|+||||++..++...+..|.+|+.||+....+
T Consensus 40 ~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~ 101 (790)
T PRK09519 40 VIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD 101 (790)
T ss_pred eecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh
Confidence 33344556898887 32 2467888899999999999999999889999999999986544
No 154
>PHA02542 41 41 helicase; Provisional
Probab=97.32 E-value=0.00035 Score=70.75 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=46.3
Q ss_pred chhhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHh
Q 017873 15 PEGSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAF 74 (365)
Q Consensus 15 ~~~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~ 74 (365)
=.+.|+.++.+ ..-.+++++|.+|+||||++.|+|..+++.|++|++++++-. ..+...+
T Consensus 175 G~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 175 KLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred CcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHH
Confidence 34567887733 223478999999999999999999999999999999999954 3344333
No 155
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.27 E-value=0.0027 Score=61.70 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=41.0
Q ss_pred hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH----C--CCCEEEEeCCCCCC
Q 017873 17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE----V--RPSVLIISTDPAHN 69 (365)
Q Consensus 17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~----~--G~rVLLiD~D~~~~ 69 (365)
+.|+.++.++ ...|+-+.|..|+|||+++..+|...+. . +.+|+.||+....+
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~ 173 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFR 173 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCC
Confidence 3588888753 3468888999999999999999987653 1 36999999986433
No 156
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.27 E-value=0.00087 Score=61.04 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=27.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
...+++.|++|+||||+|.+++ .++++++.|..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~ 44 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMS 44 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence 3457888999999999988873 46999999964
No 157
>PRK04296 thymidine kinase; Provisional
Probab=97.26 E-value=0.00076 Score=60.06 Aligned_cols=34 Identities=26% Similarity=0.183 Sum_probs=31.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEE
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLi 62 (365)
.|.++.|..|+||||.+..++..++..|++|+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4778899999999999999999999999999999
No 158
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.23 E-value=0.0049 Score=53.26 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=29.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|.+++|. |.||||.|..+|...+.+|+||+++=+=
T Consensus 5 i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQFl 39 (159)
T cd00561 5 IQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQFL 39 (159)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 4455555 9999999999999999999999996553
No 159
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.22 E-value=0.00063 Score=59.46 Aligned_cols=39 Identities=31% Similarity=0.351 Sum_probs=35.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.++++.|-+|+||||++.++|..+...|.++.++|.|..
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 477777999999999999999999988999999999953
No 160
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.22 E-value=0.0023 Score=61.33 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=43.1
Q ss_pred hhcchhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873 12 LEIPEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA 67 (365)
Q Consensus 12 ~~~~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~ 67 (365)
.....+.++.++.++ ...++.+.|.+|+|||+++..+|...+. .+.+|+.||+...
T Consensus 77 ~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 77 ITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred ecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 344556788888753 3467788899999999999999988763 2348999999864
No 161
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=97.17 E-value=0.0052 Score=56.32 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=33.9
Q ss_pred EEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 30 WVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 30 i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
|.+++| -.|.||=.+|++++..|..+|++|..+=+||--
T Consensus 3 i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYl 42 (255)
T cd03113 3 IFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYL 42 (255)
T ss_pred EEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccc
Confidence 445555 789999999999999999999999999999753
No 162
>PRK08233 hypothetical protein; Provisional
Probab=97.17 E-value=0.0013 Score=57.51 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=29.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+++++|.+|+||||+|..||..+. +..++..|.+..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~ 40 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDF 40 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence 5677778889999999999998874 346788887754
No 163
>PRK06696 uridine kinase; Validated
Probab=97.15 E-value=0.00074 Score=61.61 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=36.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+.+.++.++|.+|+||||+|..|+..|...|.+|+.+.+|-
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Dd 60 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDD 60 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 45678899999999999999999999998899999988883
No 164
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.14 E-value=0.00055 Score=63.42 Aligned_cols=36 Identities=31% Similarity=0.329 Sum_probs=33.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.-++++|++|+|||++++++|..+...|++|+++++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 467899999999999999999999999999999964
No 165
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.14 E-value=0.0044 Score=63.62 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=42.8
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~ 67 (365)
.+.|+.++.++ .-.++.+.|-+|+|||+++.+++...++. |.+|+.|+++..
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES 71 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 44688888642 23577888999999999999999988877 999999999954
No 166
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.13 E-value=0.00067 Score=68.63 Aligned_cols=52 Identities=15% Similarity=0.048 Sum_probs=44.5
Q ss_pred CCeEEEEEeCCC---CCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccC
Q 017873 26 DSLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT 79 (365)
Q Consensus 26 ~~~~i~~~sgKG---GvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~ 79 (365)
.++.|.++|--+ |+||||+|++||..+++.|+|| ||+=.+++++..||.+.+
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~LR~Pslg~~fg~kgg 107 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CACIRQPSMGPVFGVKGG 107 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEEeccCCcCCccCCCCC
Confidence 356677888888 9999999999999999999999 777566999999987643
No 167
>PTZ00035 Rad51 protein; Provisional
Probab=97.10 E-value=0.0036 Score=60.79 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=40.5
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~ 67 (365)
.+.|+.++.++ ...++.+.|..|+||||++..++..... .+.+|+.||+...
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~ 163 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT 163 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence 34588888753 3457788899999999999999877652 4568999999854
No 168
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0054 Score=58.22 Aligned_cols=37 Identities=38% Similarity=0.389 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH----CC------CCEEEEeCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAE----VR------PSVLIISTDP 66 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~----~G------~rVLLiD~D~ 66 (365)
.+|+-|-||+||||++.-+..+|+. .| .+|+.|++..
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl 137 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLEL 137 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEecc
Confidence 4567799999999999999999883 34 3788998863
No 169
>PRK00089 era GTPase Era; Reviewed
Probab=97.09 E-value=0.081 Score=50.08 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=24.7
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|.............+++.+...+.|+. +|+|++
T Consensus 86 D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKi 123 (292)
T PRK00089 86 DLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKI 123 (292)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECC
Confidence 45666666554222345566777777777765 889999
No 170
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.06 E-value=0.0011 Score=60.78 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=41.1
Q ss_pred hHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873 18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (365)
Q Consensus 18 ~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~ 67 (365)
+|+.++.+ ..-.+++++|.+|+|||+++.++|..++.. |.+|+.++++..
T Consensus 2 ~LD~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 2 DLDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred chhhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 46666652 122578999999999999999999999987 999999999954
No 171
>PRK05973 replicative DNA helicase; Provisional
Probab=97.03 E-value=0.00089 Score=61.67 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=36.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+++++|.+|+|||+++.++|...++.|++|++++++..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 477889999999999999999999999999999999965
No 172
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.00 E-value=0.015 Score=55.83 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=39.7
Q ss_pred hhhhcchhhHHhhhcCCCe---EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 10 QELEIPEGSVRNILEQDSL---KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~---~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
+.+.+=.+.|+..+..++. +|+-+.|..|+||||++..+...+.+.|..++.||.....
T Consensus 32 ~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~l 93 (322)
T PF00154_consen 32 EVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHAL 93 (322)
T ss_dssp -EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS--
T ss_pred ceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccc
Confidence 3344444568887763222 3554556789999999999999888899999999998653
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.99 E-value=0.0024 Score=51.89 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=33.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
..+++.|..|+||||++..+|..+...++.++.++++...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 3566778899999999999999998877789999988553
No 174
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.99 E-value=0.006 Score=59.32 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=40.4
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHN 69 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~~~ 69 (365)
.+.|+.++.++ ...++.+.|.+|+|||+++..+|...+. .+.+|+.||+....+
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~ 170 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFR 170 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCcc
Confidence 44688877653 3457788899999999999999976552 224899999996533
No 175
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.98 E-value=0.0038 Score=63.71 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=42.8
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~ 67 (365)
.+.|+.++.++ .-.++.++|-+|+||||+|..++..-+++ |.+++.|.++..
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES 61 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 35688888753 34678888999999999999999987766 999999999844
No 176
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.98 E-value=0.0014 Score=58.57 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=35.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
...++++.|..|+||||++..++..+...|..++++|.|.-
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 34577777999999999999999999988999999999863
No 177
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.96 E-value=0.0011 Score=58.50 Aligned_cols=36 Identities=36% Similarity=0.325 Sum_probs=33.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|+.++|..|+||||+|..++..+...|.++.+|..|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~D 36 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehh
Confidence 467889999999999999999999999999999999
No 178
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.94 E-value=0.00083 Score=62.89 Aligned_cols=55 Identities=20% Similarity=0.135 Sum_probs=43.3
Q ss_pred hcchhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873 13 EIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (365)
Q Consensus 13 ~~~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~ 67 (365)
..-.+.|+.++.+ ....+++++|.+|+||||++.++|..++.. |.+|+.++++..
T Consensus 14 ~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 14 WWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred CCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 3344567777642 222477899999999999999999999877 999999999853
No 179
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.93 E-value=0.0075 Score=55.51 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=32.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH------------CCCCEEEEeCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAE------------VRPSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~------------~G~rVLLiD~D~~ 67 (365)
+.++.|.||+||||++..+|.++|. .+.+|++++++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~ 52 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP 52 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC
Confidence 4578899999999999999999873 4568999999843
No 180
>PHA00729 NTP-binding motif containing protein
Probab=96.91 E-value=0.0017 Score=59.25 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=23.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
++.-+++.|.+||||||+|.++|..+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445677889999999999999999875
No 181
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.91 E-value=0.0089 Score=52.32 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=30.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|.++.| .|.||||.|..+|..++.+|+||+++=+--
T Consensus 8 i~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQFlK 43 (173)
T TIGR00708 8 IIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQFIK 43 (173)
T ss_pred EEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 344444 899999999999999999999999996653
No 182
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.90 E-value=0.0011 Score=61.58 Aligned_cols=37 Identities=38% Similarity=0.487 Sum_probs=33.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
++++.|-+|+||||+|..||..+...|.+|.++|.|.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 4688999999999999999999998999999998874
No 183
>COG1159 Era GTPase [General function prediction only]
Probab=96.90 E-value=0.062 Score=50.65 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=30.3
Q ss_pred HHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 217 KQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 217 ~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.++| ++-+++|+..+..--...+..++.|+....|+. +++|++
T Consensus 81 ~sl~d--vDlilfvvd~~~~~~~~d~~il~~lk~~~~pvi-l~iNKI 124 (298)
T COG1159 81 SALKD--VDLILFVVDADEGWGPGDEFILEQLKKTKTPVI-LVVNKI 124 (298)
T ss_pred HHhcc--CcEEEEEEeccccCCccHHHHHHHHhhcCCCeE-EEEEcc
Confidence 34555 456667777665444577778888888677775 778998
No 184
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0019 Score=54.79 Aligned_cols=56 Identities=25% Similarity=0.381 Sum_probs=43.8
Q ss_pred HhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhc
Q 017873 20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQ 76 (365)
Q Consensus 20 ~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~ 76 (365)
..++++++.. +.+.|-.|+||||+|++|..+|-++|+-+-.+|.|. ++.|..-++.
T Consensus 24 q~l~~qkGcv-iWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F 80 (207)
T KOG0635|consen 24 QKLLKQKGCV-IWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGF 80 (207)
T ss_pred HHHhcCCCcE-EEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCc
Confidence 4456666654 456688999999999999999999999999999993 4666544443
No 185
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.88 E-value=0.0011 Score=53.86 Aligned_cols=31 Identities=35% Similarity=0.424 Sum_probs=24.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++++|..|+||||+|..||..+ |..+ ++.|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~--i~~d 31 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV--ISMD 31 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE--EEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE--EEec
Confidence 57889999999999999999877 5544 4444
No 186
>PRK05439 pantothenate kinase; Provisional
Probab=96.86 E-value=0.0026 Score=60.95 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=40.6
Q ss_pred hcchhhHHhhhc---CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH--CCCCEEEEeCC
Q 017873 13 EIPEGSVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTD 65 (365)
Q Consensus 13 ~~~~~~l~~~~~---~~~~~i~~~sgKGGvGKTT~aa~lA~~la~--~G~rVLLiD~D 65 (365)
..+...+..++. .+...++.++|-.|+||||+|..|+..+.+ .|.+|.+|..|
T Consensus 68 ~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~D 125 (311)
T PRK05439 68 QRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTD 125 (311)
T ss_pred HHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecc
Confidence 333444444553 234567889999999999999999999876 47899999999
No 187
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.84 E-value=0.0015 Score=55.77 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=34.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++++.|..|+||||+|..++..+...|.++.++|.|..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 46788999999999999999999988999999998853
No 188
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.84 E-value=0.013 Score=54.86 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=30.8
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+.......+..++..+...++|+. +++|+.
T Consensus 89 D~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~ 126 (268)
T cd04170 89 DAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKM 126 (268)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECC
Confidence 46778888777666778888899999998865 799999
No 189
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.82 E-value=0.0024 Score=58.25 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=42.5
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.++ .-.++.+.|.+|+||||++.+++...++.|.+|+.++++..
T Consensus 6 i~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 6 VEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred hhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 35688877542 23577888999999999999999988889999999999744
No 190
>PF13479 AAA_24: AAA domain
Probab=96.82 E-value=0.0052 Score=55.70 Aligned_cols=31 Identities=35% Similarity=0.501 Sum_probs=26.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
..+++-|.+|+||||++..+ .++++||+|..
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL--------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence 34566799999999998887 77999999976
No 191
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.80 E-value=0.012 Score=54.86 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=42.6
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCCCChhhHh
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHNLSDAF 74 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~~~l~~~~ 74 (365)
.+.||.++.++ ...|.=+.|.+|+|||.++..||..... .+.+|+.||++-..+...+.
T Consensus 24 ~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~ 90 (256)
T PF08423_consen 24 CKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ 90 (256)
T ss_dssp SHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH
T ss_pred CHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH
Confidence 34688888653 2247766789999999999999987652 35689999999765554443
No 192
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.77 E-value=0.0013 Score=58.14 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH----------CCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAE----------VRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~----------~G~rVLLiD~D~~ 67 (365)
.+.++.|.+|+||||++.++|..++. .+.+|+.|+++..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 47788899999999999999999996 5789999999965
No 193
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.76 E-value=0.11 Score=46.83 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=34.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++.+-|-.|+|||-++..+++-+-..|++|..+.+.
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe 65 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTE 65 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEec
Confidence 5778889999999999999999999999999999987
No 194
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.76 E-value=0.0026 Score=59.33 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=41.6
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~ 67 (365)
.+.|++++.+ ....++++.|.+|+|||+++.++|..++.. |++|+.++++-.
T Consensus 6 ~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~ 59 (259)
T PF03796_consen 6 FPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMS 59 (259)
T ss_dssp THHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-
T ss_pred hHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCC
Confidence 3567777753 223588999999999999999999999987 699999999954
No 195
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.75 E-value=0.012 Score=52.94 Aligned_cols=47 Identities=23% Similarity=0.153 Sum_probs=38.5
Q ss_pred hhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 21 NILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 21 ~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
..++.++.+++.+.|-.|+||||+..+++..+. .+.+|.++..|+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~ 61 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVIT 61 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCC
Confidence 345566788888999999999999999988765 45799999988753
No 196
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.75 E-value=0.0022 Score=55.19 Aligned_cols=37 Identities=27% Similarity=0.146 Sum_probs=32.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|+.+.|..|+||||++..++..+..+|+||.+|..|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3556788899999999999999999999999998763
No 197
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.002 Score=60.07 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=32.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.=+++.|+.|||||.+|+++|..+.+.|.+|+.+.+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 445777999999999999999999988999999976
No 198
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.73 E-value=0.011 Score=56.97 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=39.5
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH---CC---CCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE---VR---PSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~---~G---~rVLLiD~D~~ 67 (365)
.+.|+.++.++ ...|+.+.|..|+||||++..++...+. .| .+|+.||+...
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 34688877653 3467888899999999999999875432 33 48999999865
No 199
>PF13245 AAA_19: Part of AAA domain
Probab=96.70 E-value=0.0031 Score=47.53 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=32.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHC----CCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEV----RPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~----G~rVLLiD~D~ 66 (365)
..+.++.|-+|+|||+++++.+..+... |++|+++....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~ 52 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTR 52 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCH
Confidence 4567779999999999999999888865 89999997763
No 200
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.70 E-value=0.0032 Score=53.26 Aligned_cols=37 Identities=32% Similarity=0.142 Sum_probs=29.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEE-EEeCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVL-IISTDP 66 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVL-LiD~D~ 66 (365)
+|.|+ |.-|+||||++..|...|.++|++|. +.+.|+
T Consensus 2 vv~Vv-G~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVV-GPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 34455 55689999999999999999999999 999998
No 201
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.69 E-value=0.0031 Score=63.12 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=42.4
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ .+-.+++++|.+|+|||+++.++|..+| +.|++|++++++-.
T Consensus 181 ~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~ 234 (421)
T TIGR03600 181 LPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS 234 (421)
T ss_pred ChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4567777753 2234789999999999999999999998 78999999999843
No 202
>PRK06762 hypothetical protein; Provisional
Probab=96.68 E-value=0.0022 Score=55.33 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=29.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++++++|..|+||||+|..|+..+ |..+.+++.|
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D 36 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQD 36 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHH
Confidence 4677888999999999999999887 4568888876
No 203
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.66 E-value=0.0026 Score=57.62 Aligned_cols=49 Identities=14% Similarity=0.271 Sum_probs=39.3
Q ss_pred hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++.++.......+++.|+.|+|||+++..++..+.+.|.+++.++++
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 3455554445566778889999999999999999988888899999875
No 204
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.64 E-value=0.027 Score=47.25 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=24.8
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..+..............+...+.|+ -+|+|+.
T Consensus 84 d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~ 121 (168)
T cd04163 84 DLVLFVVDASEPIGEGDEFILELLKKSKTPV-ILVLNKI 121 (168)
T ss_pred CEEEEEEECCCccCchHHHHHHHHHHhCCCE-EEEEEch
Confidence 4566666655433344556667777777776 5899998
No 205
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.61 E-value=0.0024 Score=55.62 Aligned_cols=58 Identities=26% Similarity=0.286 Sum_probs=41.0
Q ss_pred hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+++++.+...|. ....+..+++++.|..|+|||++...+...+...+.-++-+++++.
T Consensus 6 ~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 6 EEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred HHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 456777777777 6666677899999999999999999999999977544888888876
No 206
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.61 E-value=0.0026 Score=56.11 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
-+++.|..|+|||.+|+++|..+...|++|+.+++.
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 356667899999999999999999999999999863
No 207
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=96.58 E-value=0.0051 Score=56.34 Aligned_cols=37 Identities=24% Similarity=0.063 Sum_probs=32.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
|+++.+.|..|+||||++.+++..|..+|+||.++..
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 3566666777999999999999999999999999954
No 208
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.58 E-value=0.0054 Score=59.90 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=34.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH--HHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILL--AEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~l--a~~G~rVLLiD~D~ 66 (365)
+.+++++|-+|+|||.++.++|..+ ...+.+++++..+.
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH 41 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence 4688999999999999999999999 77888888887764
No 209
>PRK06526 transposase; Provisional
Probab=96.56 E-value=0.0016 Score=60.80 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=31.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.-+++.|++|+|||++|.++|..+.+.|++|+.+.+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 346788999999999999999999999999988544
No 210
>PRK08506 replicative DNA helicase; Provisional
Probab=96.53 E-value=0.0044 Score=62.99 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=42.9
Q ss_pred chhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 15 PEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 15 ~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
-.+.|+.+..+ .+-.+++++|.+|+|||+++.++|..+++.|++|++++++-.
T Consensus 178 G~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs 231 (472)
T PRK08506 178 GFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMP 231 (472)
T ss_pred ChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCC
Confidence 34457777643 223488999999999999999999999999999999999954
No 211
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.53 E-value=0.0049 Score=50.62 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=36.5
Q ss_pred hcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 23 ~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+.......+++.|..|+||||++..++..+...+.++..+++...
T Consensus 14 ~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 14 LELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred HhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 333345677888999999999999999999888888998887643
No 212
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.52 E-value=0.0044 Score=54.13 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=34.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
..++++.|-.|+||||++..++..+...+..+.++|.|.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 457788899999999999999999998888899998763
No 213
>PRK05595 replicative DNA helicase; Provisional
Probab=96.50 E-value=0.0046 Score=62.40 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=42.3
Q ss_pred cchhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873 14 IPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (365)
Q Consensus 14 ~~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~ 67 (365)
.-.+.|+.++.+ ..-.+++++|.+|+|||+++.++|..+| ++|++|+++++.-.
T Consensus 186 tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 186 SGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred CChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 334457777642 2234788999999999999999999877 67999999999843
No 214
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.48 E-value=0.004 Score=57.32 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=40.9
Q ss_pred hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
..++++........+++.|..|+|||+++.+++..+...|++|..+.+|.
T Consensus 34 ~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 34 AALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34555554444457788999999999999999999998999999999974
No 215
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0026 Score=56.77 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=35.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
|.+++++|-+|+||||+|-+||..|.+.+.+|..+..|-.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~ 40 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL 40 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh
Confidence 3567889999999999999999999999999998888743
No 216
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.43 E-value=0.0061 Score=54.81 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=33.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
...++.++|.+|+||||++..|+..+ .+..+.+++.|.-
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence 45678889999999999999999988 4668999999853
No 217
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.16 Score=47.98 Aligned_cols=54 Identities=19% Similarity=0.097 Sum_probs=42.8
Q ss_pred hHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873 18 SVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (365)
Q Consensus 18 ~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~ 71 (365)
.|+.++.++ ..+|+=+-|-.|+||||+|..++......|.+|..||+-..-+..
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~ 103 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPE 103 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHH
Confidence 467777643 235776668999999999999999999999999999998654433
No 218
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.41 E-value=0.035 Score=49.38 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=31.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+.+-+-.|.||||.|..+|..++.+|.||+++=+=-
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK 60 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK 60 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 3444456789999999999999999999999998753
No 219
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.40 E-value=0.0067 Score=53.39 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=36.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+...++++.|..|+||||++..++..+...|..++++|.|.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~ 56 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN 56 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence 34568888899999999999999999988888899999884
No 220
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.38 E-value=0.0062 Score=44.79 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
++++|..|+||||++..++..+ .|.++.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 5678999999999999999999 6788888876
No 221
>PRK08760 replicative DNA helicase; Provisional
Probab=96.37 E-value=0.0056 Score=62.28 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=41.3
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~ 67 (365)
.+.|+.+..+ .+-.++++.|.+|+|||+++.++|..+| +.|++|++++++-.
T Consensus 216 ~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs 269 (476)
T PRK08760 216 YNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS 269 (476)
T ss_pred cHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC
Confidence 3456666643 2224889999999999999999999988 45999999999854
No 222
>PRK12377 putative replication protein; Provisional
Probab=96.37 E-value=0.0051 Score=57.13 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=33.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.-++++|..|+|||.++.++|..+.+.|++|+.++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 4578889999999999999999999999999998774
No 223
>PRK08006 replicative DNA helicase; Provisional
Probab=96.37 E-value=0.0061 Score=61.90 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=43.3
Q ss_pred hcchhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873 13 EIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (365)
Q Consensus 13 ~~~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~ 67 (365)
.+-++.|+.+..+ ..-.++++.|.+|+|||++|.|+|..+| ++|++|+++++.-.
T Consensus 208 ~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~ 264 (471)
T PRK08006 208 NTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264 (471)
T ss_pred cCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3344567777643 2335888999999999999999999998 56999999999843
No 224
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.36 E-value=0.0082 Score=51.90 Aligned_cols=39 Identities=31% Similarity=0.246 Sum_probs=33.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|+++.+.|..|+||||++..+...+...|++|.+|-.|.
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~ 39 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDH 39 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 356777788899999999999999999999999987664
No 225
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.33 E-value=0.0084 Score=54.87 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=38.2
Q ss_pred hHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEE-EeCCCC
Q 017873 18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLI-ISTDPA 67 (365)
Q Consensus 18 ~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLL-iD~D~~ 67 (365)
.|...... ....++.++|..|+||||++..++..+...+..+.+ +.+|.-
T Consensus 22 ~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 22 RLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 34433333 455688889999999999999999999987776666 888753
No 226
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.33 E-value=0.0071 Score=60.76 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=41.9
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ..-.+++++|.+|+|||+++.++|..++. .|++|++++++-.
T Consensus 182 ~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~ 235 (434)
T TIGR00665 182 FTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMS 235 (434)
T ss_pred chhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCC
Confidence 4457777642 22348899999999999999999999885 6999999999954
No 227
>PRK06749 replicative DNA helicase; Provisional
Probab=96.31 E-value=0.0064 Score=61.01 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=42.5
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.+..+ ..-.++++.|.+|+|||+++.++|..+|++|++|+++++.-.
T Consensus 173 ~~~LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs 225 (428)
T PRK06749 173 YTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMS 225 (428)
T ss_pred cHHHHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCC
Confidence 4456666543 223488999999999999999999999999999999999854
No 228
>PRK15453 phosphoribulokinase; Provisional
Probab=96.30 E-value=0.0073 Score=56.88 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=36.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
...|+.++|-.|+||||++..++..+...|.++.+++.|.-+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 345777889999999999999999998888889999999544
No 229
>PRK08727 hypothetical protein; Validated
Probab=96.30 E-value=0.0066 Score=55.83 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=35.8
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.....+++.|+.|+|||.++.+++..+.+.|++|..+.++
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 33445689999999999999999999999999999999864
No 230
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.27 E-value=0.0063 Score=56.87 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=35.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
|+-++|-.|+||||++..++..+.+.|.+|.+|+.|.-+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 3567899999999999999999999999999999996544
No 231
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.25 E-value=0.0085 Score=57.43 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=34.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+-+++.|..|+|||.+++++|..++++|++|..+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 34578889999999999999999999999999999773
No 232
>PRK05748 replicative DNA helicase; Provisional
Probab=96.24 E-value=0.0073 Score=61.00 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=41.7
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ..-.+++++|.+|+|||+++.++|...| +.|++|+++++.-.
T Consensus 190 ~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms 243 (448)
T PRK05748 190 FTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG 243 (448)
T ss_pred hHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4457777653 2224789999999999999999999988 56999999999854
No 233
>PRK08840 replicative DNA helicase; Provisional
Probab=96.24 E-value=0.0076 Score=61.09 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=42.5
Q ss_pred chhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873 15 PEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (365)
Q Consensus 15 ~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~ 67 (365)
-.++|+.++.+ ....++++.|.+|+|||+++.|+|...| ++|++|+++++.-.
T Consensus 203 G~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 203 GFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred CcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 34457777653 2335888999999999999999999998 56999999999943
No 234
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.23 E-value=0.0052 Score=59.57 Aligned_cols=35 Identities=31% Similarity=0.312 Sum_probs=33.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D 65 (365)
.+++|-.|+||||++..++.+|. ..|.+|.++|.|
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~D 37 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYD 37 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccc
Confidence 57889999999999999999998 689999999999
No 235
>COG4240 Predicted kinase [General function prediction only]
Probab=96.20 E-value=0.0079 Score=54.55 Aligned_cols=40 Identities=30% Similarity=0.313 Sum_probs=36.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CCEEEEeCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTD 65 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G-~rVLLiD~D 65 (365)
+.+.|+++||.-|+||||+|+.+-..|+..| +||+-++.|
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLD 88 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLD 88 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehh
Confidence 4467889999999999999999999999988 899999999
No 236
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.18 E-value=0.012 Score=54.84 Aligned_cols=59 Identities=25% Similarity=0.227 Sum_probs=46.1
Q ss_pred hhhhhhcchhhHHhhh---cCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCC--EEEEeCCC
Q 017873 8 QDQELEIPEGSVRNIL---EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPS--VLIISTDP 66 (365)
Q Consensus 8 ~~~~~~~~~~~l~~~~---~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~r--VLLiD~D~ 66 (365)
+.++.+.+...+..++ ..+.+.|+..+|..||||||+|..++..+++.+.+ |-+|-+|-
T Consensus 59 ~~~~~~~~~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDG 122 (283)
T COG1072 59 YVEARERLFAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDG 122 (283)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccc
Confidence 3444555555555554 35667789999999999999999999999988765 99999993
No 237
>PRK06321 replicative DNA helicase; Provisional
Probab=96.18 E-value=0.0085 Score=60.84 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=42.0
Q ss_pred hhhHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~ 67 (365)
.++|+.++.+- .-.++++.|.+|+|||+++.++|..+| +.|++|+++++.-.
T Consensus 213 ~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs 266 (472)
T PRK06321 213 FIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT 266 (472)
T ss_pred cHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 34577777632 224788999999999999999999998 56999999999853
No 238
>PRK09183 transposase/IS protein; Provisional
Probab=96.17 E-value=0.0072 Score=56.55 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=31.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.+++.|..|+|||+++.++|..+...|++|+.+++
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 45577899999999999999998899999998874
No 239
>PRK09165 replicative DNA helicase; Provisional
Probab=96.16 E-value=0.0083 Score=61.38 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=41.2
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC---------------CCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV---------------RPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~---------------G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ..-.+++++|.+|+||||++.++|...|.. |++|+++++.-.
T Consensus 204 ~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs 271 (497)
T PRK09165 204 LRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS 271 (497)
T ss_pred hHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC
Confidence 4457777743 222478999999999999999999999853 789999999854
No 240
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.15 E-value=0.0065 Score=54.09 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=32.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCC----EEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPS----VLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~r----VLLiD~D 65 (365)
|+.++|-+|+||||+|..|+..|...|.. +.++..|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d 40 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLD 40 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeec
Confidence 57889999999999999999999988876 7777777
No 241
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.14 E-value=0.35 Score=44.11 Aligned_cols=38 Identities=8% Similarity=0.027 Sum_probs=30.0
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..++......+.+.+..+...|+|+ -+|+|+.
T Consensus 111 D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~ 148 (224)
T cd04165 111 DYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKI 148 (224)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECc
Confidence 3556666665555678889999999999996 5889999
No 242
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.12 E-value=0.057 Score=45.13 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=25.4
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+..........+...++..+.|+ -+|+|+.
T Consensus 78 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~ 115 (157)
T cd01894 78 DVILFVVDGREGLTPADEEIAKYLRKSKKPV-ILVVNKV 115 (157)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhcCCCE-EEEEECc
Confidence 4667776664432233456777888888776 5889998
No 243
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.11 E-value=0.01 Score=54.07 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=35.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
...+++.|..|+|||+++.+++..+...|.++..+++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 456788999999999999999999988999999999864
No 244
>PRK06904 replicative DNA helicase; Validated
Probab=96.11 E-value=0.009 Score=60.70 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=40.9
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~ 67 (365)
.+.|+.+..+ .+-.++++.|.+|+|||+++.|+|..+|. .|++|+++++.-.
T Consensus 208 ~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 208 FTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred hHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3356666542 22348899999999999999999999884 6999999999943
No 245
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.07 E-value=0.0079 Score=56.59 Aligned_cols=38 Identities=34% Similarity=0.379 Sum_probs=29.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|.+++++|-+|+||||+|..|+..+...+.+|.+|+.|
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~ 38 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD 38 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 45789999999999999999999999999999999954
No 246
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.0077 Score=51.79 Aligned_cols=34 Identities=35% Similarity=0.340 Sum_probs=29.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
++++|.+||||||++.-+|-.|.+.|++|.=+=+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 5677999999999999999999999998874433
No 247
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.00 E-value=0.07 Score=50.03 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=24.5
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+......+ ..+.+.+...+.|+. +|+|+.
T Consensus 81 Dvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~i-lV~NK~ 117 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG-EFVLTKLQNLKRPVV-LTRNKL 117 (270)
T ss_pred CEEEEEEECCCCCchH-HHHHHHHHhcCCCEE-EEEECe
Confidence 4566666554433223 667778888888874 889998
No 248
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.99 E-value=0.014 Score=51.23 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=34.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+.++.+.|..|+||||+...+...+..+|+||..|=.+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 456778889999999999999999999999999999654
No 249
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.95 E-value=0.17 Score=45.21 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=30.1
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..+..-....+++.+..+...|++..-+++|+.
T Consensus 90 D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~ 128 (195)
T cd01884 90 DGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKA 128 (195)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 466777766655557788899999999987555789999
No 250
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.94 E-value=0.028 Score=49.06 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=29.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+++++|..|+|||++|..+|.. .|.+++.+++...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~ 35 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEA 35 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCc
Confidence 4678999999999999999865 6789999977644
No 251
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.94 E-value=0.011 Score=53.88 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=32.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH--CCCCEEEEeCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~--~G~rVLLiD~D~~ 67 (365)
|+-++|..|+||||++..|+..+.. .+.+|.+|..|--
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 3567799999999999999999875 5678999999943
No 252
>PRK06893 DNA replication initiation factor; Validated
Probab=95.93 E-value=0.012 Score=53.91 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=34.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
...+++.|+.|+|||+++.++|..+.+.|.+|..++++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34678889999999999999999999999999999885
No 253
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.92 E-value=0.01 Score=52.76 Aligned_cols=35 Identities=37% Similarity=0.482 Sum_probs=30.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|+.++|..|+||||++..++..+ .+.++.++++|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~ 35 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS 35 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence 46788999999999999999988 567899999994
No 254
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.91 E-value=0.0088 Score=57.88 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=33.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.-+++.|..|+|||+++.++|..+...|++|+.++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 5577889999999999999999999999999999874
No 255
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.87 E-value=0.02 Score=53.51 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=43.8
Q ss_pred hhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873 12 LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
++.+...+...+..+ ..+ ++.|..|+|||++|.++|.. .|.++..+.+++.....+++|..
T Consensus 7 ~~~l~~~~l~~l~~g-~~v-LL~G~~GtGKT~lA~~la~~---lg~~~~~i~~~~~~~~~dllg~~ 67 (262)
T TIGR02640 7 VKRVTSRALRYLKSG-YPV-HLRGPAGTGKTTLAMHVARK---RDRPVMLINGDAELTTSDLVGSY 67 (262)
T ss_pred HHHHHHHHHHHHhcC-CeE-EEEcCCCCCHHHHHHHHHHH---hCCCEEEEeCCccCCHHHHhhhh
Confidence 444455555555443 333 45799999999999999974 48999999999876667777743
No 256
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.87 E-value=0.019 Score=54.58 Aligned_cols=42 Identities=31% Similarity=0.352 Sum_probs=34.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D~~ 67 (365)
+.+.|+-++|..|+||||++..++..+.+. +.+|.++..|.-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 455788899999999999999888888743 447999999953
No 257
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.87 E-value=0.0098 Score=53.44 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=31.8
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHH--------HHCCCCEEEEeCC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILL--------AEVRPSVLIISTD 65 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~l--------a~~G~rVLLiD~D 65 (365)
+...+.+.. +.+++|.+|+||||+.++++..+ ...+.++|++.-.
T Consensus 10 i~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~s 62 (236)
T PF13086_consen 10 IQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPS 62 (236)
T ss_dssp HHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESS
T ss_pred HHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCC
Confidence 444443332 78999999999999999999988 4667888887654
No 258
>PRK05636 replicative DNA helicase; Provisional
Probab=95.85 E-value=0.014 Score=59.79 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=41.3
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~ 67 (365)
.++|+.+..+ ..-.+++++|.+|+|||+++.++|..+| +.|++|+++++.-.
T Consensus 252 ~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 252 FKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred hHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 3457776643 2335788999999999999999999888 56899999999854
No 259
>PRK08181 transposase; Validated
Probab=95.84 E-value=0.01 Score=55.83 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=32.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
-+++.|..|+|||.++.++|..+.+.|++|+.+++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 36788999999999999999999999999999976
No 260
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.81 E-value=0.021 Score=56.35 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=46.7
Q ss_pred hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Q 017873 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLIISTDPAHN 69 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G--~rVLLiD~D~~~~ 69 (365)
+++++++...+...+.+.....++++|..|+|||+++..++..+...+ ..++-|++....+
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 556777777777776554455678999999999999999999998764 6677777765444
No 261
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=95.78 E-value=0.057 Score=50.04 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=31.6
Q ss_pred EEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 29 ~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
.|++++| -.|.||=.+|++++.-|..+|++|.++=+||--
T Consensus 3 yIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYl 43 (276)
T PF06418_consen 3 YIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYL 43 (276)
T ss_dssp EEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SS
T ss_pred EEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecccc
Confidence 4556666 799999999999999999999999999999753
No 262
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.76 E-value=0.059 Score=51.06 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=39.9
Q ss_pred hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
...+..+...+-.++-+.|..|+||||+...+...+... +++.+|..|..
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~ 142 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQ 142 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcC
Confidence 345666666667777788999999999999999988654 58999999964
No 263
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.76 E-value=0.026 Score=49.85 Aligned_cols=37 Identities=32% Similarity=0.457 Sum_probs=32.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++++.|-.|+||||++..|+..+...|++|.++-..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 40 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP 40 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5678889999999999999999999999988766543
No 264
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.74 E-value=0.015 Score=52.04 Aligned_cols=46 Identities=28% Similarity=0.328 Sum_probs=35.6
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++.++.+ +.++.++.|.+|+||||+...++..+...|++|+++..-
T Consensus 10 ~~~~l~~-~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 10 VRAILTS-GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp HHHHHHC-TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred HHHHHhc-CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 4445544 356778889999999999999999999999999998754
No 265
>PRK07004 replicative DNA helicase; Provisional
Probab=95.72 E-value=0.014 Score=59.10 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=40.7
Q ss_pred hhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873 17 GSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (365)
Q Consensus 17 ~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~ 67 (365)
+.|+.+..+ ..-.+++++|.+|+|||+++.++|..+| +.|++|+++++.-.
T Consensus 201 ~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~ 253 (460)
T PRK07004 201 VDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP 253 (460)
T ss_pred HHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 346666542 2234789999999999999999999988 57999999999954
No 266
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.70 E-value=0.029 Score=61.24 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=37.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC---CCChhhHhh
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDAFQ 75 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~---~~~l~~~~~ 75 (365)
..+++.|..|||||++|..+|..+...+.+++.+|+.. .++.+.++|
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g 645 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIG 645 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcC
Confidence 45667899999999999999999988888999999873 234444444
No 267
>PF05729 NACHT: NACHT domain
Probab=95.69 E-value=0.011 Score=50.13 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=25.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVR 56 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G 56 (365)
+++++.|.+|+||||++..++..++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 4688999999999999999999999765
No 268
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=95.66 E-value=0.072 Score=46.07 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=26.5
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..............+..+...+.++ -+|+|+.
T Consensus 87 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i-~iv~nK~ 124 (189)
T cd00881 87 DGAILVVDANEGVQPQTREHLRIAREGGLPI-IVAINKI 124 (189)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHCCCCe-EEEEECC
Confidence 4667777765544455666777777777776 4889998
No 269
>PRK05642 DNA replication initiation factor; Validated
Probab=95.65 E-value=0.014 Score=53.64 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=33.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..+++.|+.|+|||.++.+++..+...|++|+.++++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 4678899999999999999999998889999999986
No 270
>PRK06547 hypothetical protein; Provisional
Probab=95.60 E-value=0.018 Score=50.48 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=28.1
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
...+.++.++|..|+||||+|..||..+ | +.++++|
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~---~--~~~~~~d 47 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART---G--FQLVHLD 47 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh---C--CCeeccc
Confidence 4556677888999999999999998863 3 4566776
No 271
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.57 E-value=0.03 Score=49.16 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=31.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++++.|--|+||||++..|+..+...|++|..+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 567789999999999999999999999999776654
No 272
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.098 Score=50.00 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=41.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH----CCCCEEEEeCCCCCChhhHhhcc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~----~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
..+++..-|.+|+|||+++-+||+.|+- +-++..+|..+...=.+.||+-.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsES 230 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSES 230 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhh
Confidence 3467888999999999999999999982 33688899998766677888743
No 273
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.54 E-value=0.04 Score=60.11 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..+++.|..|||||++|..+|..+-..+...+-+|+.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~s 635 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMS 635 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhH
Confidence 3567789999999999999999887667777778775
No 274
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.52 E-value=0.014 Score=54.77 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=34.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC-C-CEEEEeCCCCCChhh
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR-P-SVLIISTDPAHNLSD 72 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G-~-rVLLiD~D~~~~l~~ 72 (365)
.+.+++.+.|-||+||||+|..++......+ + .++-+++....+...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~ 65 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQ 65 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccc
Confidence 5678899999999999999999998755332 3 466677776555443
No 275
>PF12846 AAA_10: AAA-like domain
Probab=95.52 E-value=0.026 Score=52.91 Aligned_cols=40 Identities=38% Similarity=0.447 Sum_probs=34.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhh
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~ 72 (365)
+++.|+.|+||||+..++...+...|.+++++ |+.++...
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~--D~~g~~~~ 43 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF--DPKGDYSP 43 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE--cCCchHHH
Confidence 46779999999999999999999999999999 44455544
No 276
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.51 E-value=0.029 Score=61.09 Aligned_cols=48 Identities=29% Similarity=0.333 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC---CCChhhHhh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDAFQ 75 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~---~~~l~~~~~ 75 (365)
.-++++.|..|||||.+|.+||..+-..+.++..+|+.. .++.+.++|
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g 646 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKG 646 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccC
Confidence 346788899999999999999999865556777777542 344444444
No 277
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=95.51 E-value=0.13 Score=48.32 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=29.3
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
.+++|.....-....+.+++..+...++|+. +++|+.
T Consensus 90 ~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~ 126 (270)
T cd01886 90 GAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKM 126 (270)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECC
Confidence 5666666655555677899999999999985 899999
No 278
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.45 E-value=0.029 Score=53.36 Aligned_cols=44 Identities=30% Similarity=0.388 Sum_probs=32.6
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
++.+...+.+.+++++|..|+||||+|..||..+ |.. .+|.+|.
T Consensus 83 ~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~ 126 (301)
T PRK04220 83 WRRIRKSKEPIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTDS 126 (301)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEechH
Confidence 3333333445678899999999999999999887 554 4677883
No 279
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.44 E-value=0.01 Score=49.52 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=26.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
++++.|.+|+||||++..++..+. ..+||.|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 578899999999999998876543 67788884
No 280
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.44 E-value=0.015 Score=49.19 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=26.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
|++++|..|+||||+|..++..+ | ..++|.|.-
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~ 33 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL---G--APFIDGDDL 33 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCccc
Confidence 46888999999999999998874 3 356788854
No 281
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.44 E-value=0.016 Score=49.85 Aligned_cols=33 Identities=30% Similarity=0.239 Sum_probs=26.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
...+++.|.+|+||||+|..||..+ |. .++|.|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l---~~--~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL---GY--DFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh---CC--CEEECh
Confidence 3477888999999999999999987 43 455776
No 282
>PRK08116 hypothetical protein; Validated
Probab=95.41 E-value=0.022 Score=53.61 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=32.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.-+++.|..|+|||.++.++|..+.++|++|+.+++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 357888999999999999999999988999999985
No 283
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=95.41 E-value=0.02 Score=56.96 Aligned_cols=37 Identities=22% Similarity=0.084 Sum_probs=31.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
|+|+-+.|+.|+||||+...|...|..+|+||.+|=-
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3466556667999999999999999999999999643
No 284
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.40 E-value=0.031 Score=46.57 Aligned_cols=44 Identities=30% Similarity=0.346 Sum_probs=37.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
++..|..|+|||+++-.+|..+ +.++..+.+...-+..+++|.-
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~~ 45 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGSY 45 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceeee
Confidence 4667899999999999999998 8899999999888888888754
No 285
>PRK15494 era GTPase Era; Provisional
Probab=95.39 E-value=0.15 Score=49.58 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.3
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILS 49 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA 49 (365)
+.+-|.+||||||+.-.+.
T Consensus 55 V~ivG~~nvGKSTLin~l~ 73 (339)
T PRK15494 55 VCIIGRPNSGKSTLLNRII 73 (339)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 4555899999999987763
No 286
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.38 E-value=0.016 Score=51.80 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=29.5
Q ss_pred cCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 24 ~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+..++++++.|-+|+||||++..+...+. +...+.||.|.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~ 51 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADE 51 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHH
Confidence 345678899999999999999999877766 66689999994
No 287
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=95.37 E-value=0.049 Score=49.08 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAE 54 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~ 54 (365)
+.+.|..|+||||++-+|......
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~~~ 26 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQTHD 26 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCC
Confidence 455699999999999999876543
No 288
>PRK06921 hypothetical protein; Provisional
Probab=95.36 E-value=0.022 Score=53.54 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=32.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~ 64 (365)
..-+++.|..|+|||.++.++|..+.++ |++|+.+++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3456778999999999999999999987 999999885
No 289
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.34 E-value=0.027 Score=55.37 Aligned_cols=40 Identities=25% Similarity=0.114 Sum_probs=35.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.++++-+.|..|+||||+...+...|.++|++|.+|=-|.
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 3567777889999999999999999999999999998663
No 290
>PRK06217 hypothetical protein; Validated
Probab=95.27 E-value=0.025 Score=49.76 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=25.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++.|-+|+||||+|..||..+ |. -.+|+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l---~~--~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL---DI--PHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CC--cEEEcCc
Confidence 36777899999999999999866 44 3688883
No 291
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.24 E-value=0.042 Score=53.58 Aligned_cols=61 Identities=25% Similarity=0.318 Sum_probs=44.6
Q ss_pred hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC------CCEEEEeCCCCCC
Q 017873 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR------PSVLIISTDPAHN 69 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G------~rVLLiD~D~~~~ 69 (365)
+++++.+...|...+.+.....++++|.+|+|||+++..++..+.... ..++.|++....+
T Consensus 21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 456777777777766655556788999999999999999999886432 3466677654333
No 292
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.23 E-value=0.24 Score=43.52 Aligned_cols=47 Identities=17% Similarity=0.069 Sum_probs=34.7
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
|-.....+++..++++ .|=||||.|..+|...+-+|+||++|=+=-.
T Consensus 14 ~~~~~~~~Gli~VYtG--dGKGKTTAAlGlalRAaG~G~rV~iiQFlKg 60 (178)
T PRK07414 14 LPLPYTIEGLVQVFTS--SQRNFFTSVMAQALRIAGQGTPVLIVQFLKG 60 (178)
T ss_pred cccCCCCCCEEEEEeC--CCCCchHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 3333444555555543 4579999999999999999999999988543
No 293
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.19 E-value=0.081 Score=49.60 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=33.7
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
|..++.. ...+++++|..|+||||+..++...+...+.+++.|+
T Consensus 72 l~~~~~~-~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE 115 (264)
T cd01129 72 FRKLLEK-PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE 115 (264)
T ss_pred HHHHHhc-CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence 4455543 3457889999999999999998888776677777775
No 294
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.17 E-value=0.029 Score=48.51 Aligned_cols=40 Identities=23% Similarity=0.095 Sum_probs=34.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++|+=+.|.-|+||||+...+...|..+|+||.+|=-...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 5666666788899999999999999999999999976543
No 295
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.15 E-value=0.077 Score=56.98 Aligned_cols=43 Identities=23% Similarity=0.242 Sum_probs=32.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC---CCChhhHhh
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDAFQ 75 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~---~~~l~~~~~ 75 (365)
.+++.|..|||||++|..+|..+ +.++.-+|+.. .++.+.++|
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d~se~~~~~~~~~lig 531 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEAL---GVHLERFDMSEYMEKHTVSRLIG 531 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHh---cCCeEEEeCchhhhcccHHHHhc
Confidence 46788999999999999999987 56788888753 244455544
No 296
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.14 E-value=0.12 Score=41.42 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=23.3
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcC
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQ 262 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~ 262 (365)
..+++|...+.........++++|+ .+.|+. +|+|+
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i-~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK-NKKPII-LVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH-TTSEEE-EEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh-cCCCEE-EEEcC
Confidence 4677777776632345667778886 666654 77775
No 297
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.12 E-value=0.46 Score=51.68 Aligned_cols=29 Identities=41% Similarity=0.532 Sum_probs=26.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 35 GKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 35 gKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
...|+||||+-...|.++|.+|+|+++|=
T Consensus 104 APTGvGKTTfg~~~sl~~a~kgkr~yii~ 132 (1187)
T COG1110 104 APTGVGKTTFGLLMSLYLAKKGKRVYIIV 132 (1187)
T ss_pred cCCCCchhHHHHHHHHHHHhcCCeEEEEe
Confidence 67899999999999999999999999874
No 298
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=95.10 E-value=0.3 Score=45.01 Aligned_cols=37 Identities=24% Similarity=0.149 Sum_probs=28.1
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
.+++|.....-....++.+++.++..++|+. +++|+.
T Consensus 90 ~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~ 126 (237)
T cd04168 90 GAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKI 126 (237)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECc
Confidence 5566665544444678889999999999975 899999
No 299
>PF13173 AAA_14: AAA domain
Probab=95.07 E-value=0.032 Score=46.07 Aligned_cols=39 Identities=33% Similarity=0.354 Sum_probs=33.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+++++.|.-||||||++..++..+- ...+++.+|+|..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCH
Confidence 46788889999999999999998877 5678999999843
No 300
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.06 E-value=0.02 Score=46.50 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~l 52 (365)
++++|..|+||||+|..|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998
No 301
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.02 E-value=0.038 Score=54.84 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=35.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
...|+-++|-.|+||||++..+...+...|.+|..|..|-
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD 250 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD 250 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence 4567889999999999999999888877789999999984
No 302
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.02 E-value=0.25 Score=42.44 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=28.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+++++|--|+||||+...+... ..|.++.++-.|.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~--~~~~~~~~i~~~~ 36 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE--QHGRKIAVIENEF 36 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--ccCCcEEEEecCC
Confidence 5678899999999999988765 3588888887774
No 303
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.01 E-value=0.025 Score=50.68 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..+++++|.+|+||||+|..||..+ |..+ ++..|
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D 36 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGD 36 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhH
Confidence 4588999999999999999999874 5543 67777
No 304
>PLN02796 D-glycerate 3-kinase
Probab=95.00 E-value=0.036 Score=53.73 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+.|+.++|..|+||||++..++..+...|.++..|..|-
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 4567788899999999999999999987788899998883
No 305
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.022 Score=49.07 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=20.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
++.+||++|+||||+|.-||..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 567899999999999999988753
No 306
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.98 E-value=0.062 Score=58.47 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=29.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++.|..|||||++|..||..+-..+.+++-+|+.
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s 576 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMS 576 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEch
Confidence 457799999999999999999886555667777765
No 307
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.5 Score=49.70 Aligned_cols=36 Identities=39% Similarity=0.434 Sum_probs=27.2
Q ss_pred hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.|.+.+.++ -....+++|..|+||||++..+|..|-
T Consensus 27 ~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 27 ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555543 334567889999999999999999885
No 308
>PRK05380 pyrG CTP synthetase; Validated
Probab=94.91 E-value=0.16 Score=51.98 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=34.0
Q ss_pred EEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.|.+++| -.|.||=.+|++++..|..+|++|.++=+||-
T Consensus 4 ~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpY 43 (533)
T PRK05380 4 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 43 (533)
T ss_pred EEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence 3445555 79999999999999999999999999999974
No 309
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.86 E-value=0.076 Score=57.03 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=42.1
Q ss_pred hhhhhcchhhHHhhhc-----CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC---CCChhhHhhc
Q 017873 9 DQELEIPEGSVRNILE-----QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDAFQQ 76 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~-----~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~---~~~l~~~~~~ 76 (365)
+++++.+...+..... +++...+++.|..|||||++|..+|..+ +.+.+-+|+.. .++.+.++|.
T Consensus 464 ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~i~id~se~~~~~~~~~LiG~ 536 (758)
T PRK11034 464 DKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CCCcEEeechhhcccccHHHHcCC
Confidence 3444445554443321 2233356888999999999999999887 56777777753 2456666664
No 310
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=94.82 E-value=0.21 Score=50.12 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=33.4
Q ss_pred EEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 30 WVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
|++++| -.|.||-.+|+++|.-|..+|++|-++=+||-
T Consensus 4 IfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 4 IFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred EEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccc
Confidence 445555 78999999999999999999999999999974
No 311
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.80 E-value=0.049 Score=57.49 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=37.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
....++++.|..|+||||+|..|+..|...|..+.++|.|.
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~ 498 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN 498 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh
Confidence 34678889999999999999999999988899999999995
No 312
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.74 E-value=0.03 Score=49.75 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=26.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|+.++|..|+||||+|..|+..+. .+.+|+.|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~D 32 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQD 32 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccc
Confidence 467789999999999999998862 47888888
No 313
>PLN02327 CTP synthase
Probab=94.72 E-value=0.28 Score=50.30 Aligned_cols=39 Identities=31% Similarity=0.441 Sum_probs=34.0
Q ss_pred EEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.|++++| -.|.||=.+|++++..|..+|++|..+=+||-
T Consensus 3 ~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPY 42 (557)
T PLN02327 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPY 42 (557)
T ss_pred EEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccc
Confidence 3445555 79999999999999999999999999999974
No 314
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.68 E-value=0.049 Score=48.91 Aligned_cols=37 Identities=32% Similarity=0.393 Sum_probs=29.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
-.++.++|.+|+||||++..++..+.. ..+.++..|.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~ 42 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDN 42 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEecccc
Confidence 457788899999999999999987653 4577787774
No 315
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=94.67 E-value=0.057 Score=49.14 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=32.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D 65 (365)
+.++++ |+.|+|||+++..+...+. +.|.+++++|..
T Consensus 24 ~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~ 61 (229)
T PF01935_consen 24 RHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPH 61 (229)
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 355555 7899999999999999999 889999999886
No 316
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.67 E-value=0.038 Score=48.19 Aligned_cols=30 Identities=33% Similarity=0.328 Sum_probs=25.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVL 60 (365)
+|++|+.|+||||+...+...+...|.+|.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~ 31 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVG 31 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccc
Confidence 578899999999999999999987776654
No 317
>PRK12740 elongation factor G; Reviewed
Probab=94.67 E-value=0.17 Score=53.75 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=29.0
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+.......+...+..+...++|+. +|+|+.
T Consensus 85 D~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~ 122 (668)
T PRK12740 85 DGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKM 122 (668)
T ss_pred CeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECC
Confidence 46677777766556677788888888898875 788998
No 318
>PRK07773 replicative DNA helicase; Validated
Probab=94.67 E-value=0.043 Score=60.16 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=40.9
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ..-.+++++|.+|+|||+++.++|...|. .|++|++++++-.
T Consensus 204 ~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms 257 (886)
T PRK07773 204 FTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS 257 (886)
T ss_pred hhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3456666632 12247899999999999999999999985 5899999999844
No 319
>PRK06851 hypothetical protein; Provisional
Probab=94.65 E-value=0.088 Score=51.62 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=36.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
...++.+++|..|+||||+...++..+.++|++|.+.=|-.
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 45678899999999999999999999999999999887643
No 320
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.64 E-value=0.049 Score=44.35 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=26.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.|..|+||||++..+|..+ |..++-+|+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cccccccccc
Confidence 4678999999999999999986 5666666664
No 321
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.61 E-value=0.034 Score=52.77 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=29.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
++++++.|.+|+||||+|..++..+. ....+|.|.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~ 36 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDD 36 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccH
Confidence 57889999999999999999988762 467888874
No 322
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.48 Score=48.73 Aligned_cols=36 Identities=39% Similarity=0.459 Sum_probs=26.8
Q ss_pred hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.|.+.+.++ -..-.+++|..|+||||+|..+|..+-
T Consensus 27 ~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 27 ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555443 233457889999999999999999885
No 323
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=94.57 E-value=0.34 Score=49.54 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=34.1
Q ss_pred EEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.|.+++| -.|.||=.+|++++..|..+|++|..+=+||-
T Consensus 3 ~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (525)
T TIGR00337 3 YIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPY 42 (525)
T ss_pred EEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence 3445555 79999999999999999999999999999974
No 324
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.50 E-value=0.054 Score=56.31 Aligned_cols=37 Identities=32% Similarity=0.417 Sum_probs=33.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D 65 (365)
.++++.|-.|+||||++..||..|.. .|.++.++|.|
T Consensus 393 ~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D 430 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD 430 (568)
T ss_pred eEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc
Confidence 46777899999999999999999986 78889999999
No 325
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=0.28 Score=44.87 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=37.7
Q ss_pred hcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH-----CCCCEEEEeCC
Q 017873 13 EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE-----VRPSVLIISTD 65 (365)
Q Consensus 13 ~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~-----~G~rVLLiD~D 65 (365)
.+..+.++.+-.++...+++ -|.+|+||||+-..+|..+|- .++||.+||.-
T Consensus 123 Gt~~~li~~ly~~g~lntLi-igpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer 179 (308)
T COG3854 123 GTANPLIKDLYQNGWLNTLI-IGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER 179 (308)
T ss_pred ccchHHHHHHHhcCceeeEE-ecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc
Confidence 34445455555555444444 479999999999999999883 57899999974
No 326
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.46 E-value=0.05 Score=53.06 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=36.2
Q ss_pred hhhhhhcchhhHHhhhc--CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873 8 QDQELEIPEGSVRNILE--QDSLKWVFVGGKGGVGKTTCSSILSILLAE 54 (365)
Q Consensus 8 ~~~~~~~~~~~l~~~~~--~~~~~i~~~sgKGGvGKTT~aa~lA~~la~ 54 (365)
+++.++++..-++.... ...++++.+.|..|+||||+|.+||..+..
T Consensus 56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34556666666665554 335688999999999999999999999975
No 327
>PRK10490 sensor protein KdpD; Provisional
Probab=94.44 E-value=1.8 Score=47.82 Aligned_cols=42 Identities=26% Similarity=0.245 Sum_probs=35.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEE--EEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVL--IISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVL--LiD~D~~ 67 (365)
+|+--+|++.-+|||||+-..+-|..+.++|..|+ +++.--+
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h~r 65 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETHGR 65 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCCCC
Confidence 56777899999999999999999999999999995 5555433
No 328
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=94.42 E-value=0.91 Score=42.60 Aligned_cols=38 Identities=18% Similarity=0.009 Sum_probs=27.4
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..+..-....++++++.+...++|+ -+++|+.
T Consensus 96 D~~IlVvda~~g~~~~~~~i~~~~~~~~~P~-iivvNK~ 133 (267)
T cd04169 96 DSAVMVIDAAKGVEPQTRKLFEVCRLRGIPI-ITFINKL 133 (267)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHhcCCCE-EEEEECC
Confidence 3566676664433456678888888889986 4789999
No 329
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.41 E-value=0.57 Score=48.48 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=26.4
Q ss_pred HHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 19 l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
|.+.+.. +.....+++|..|+||||+|..+|..+-
T Consensus 28 L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 28 LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4555544 2334567889999999999999999875
No 330
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=94.35 E-value=0.95 Score=43.40 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=15.6
Q ss_pred EEEEEeCCCCCcHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSIL 48 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~l 48 (365)
..+++-||+||||||+.-.+
T Consensus 39 ~rIllvGktGVGKSSliNsI 58 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSI 58 (313)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34566699999999987665
No 331
>PRK00093 GTP-binding protein Der; Reviewed
Probab=94.34 E-value=0.23 Score=49.77 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=16.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILS 49 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA 49 (365)
+|+++ |++||||||+...+.
T Consensus 3 ~I~iv-G~~~vGKStL~n~l~ 22 (435)
T PRK00093 3 VVAIV-GRPNVGKSTLFNRLT 22 (435)
T ss_pred EEEEE-CCCCCCHHHHHHHHh
Confidence 44454 999999999988874
No 332
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.064 Score=57.12 Aligned_cols=49 Identities=24% Similarity=0.241 Sum_probs=36.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC-----CCCChhhHhhccc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD-----PAHNLSDAFQQRF 78 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D-----~~~~l~~~~~~~~ 78 (365)
.-..++.|..|||||-+|-+||..|= |-.--+|-+| ..|+.+.+.|.+.
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lf--g~e~aliR~DMSEy~EkHsVSrLIGaPP 574 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALF--GDEQALIRIDMSEYMEKHSVSRLIGAPP 574 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhc--CCCccceeechHHHHHHHHHHHHhCCCC
Confidence 34668899999999999999999874 4444556666 4588888888653
No 333
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=94.31 E-value=0.078 Score=56.85 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=29.3
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+..-...++.+++..+...++++. +++|++
T Consensus 111 D~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKi 148 (720)
T TIGR00490 111 DGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKV 148 (720)
T ss_pred CEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEECh
Confidence 46677776655455677888888888899886 999999
No 334
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.086 Score=52.66 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=41.5
Q ss_pred chhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCC
Q 017873 15 PEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDP 66 (365)
Q Consensus 15 ~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~ 66 (365)
=.++|+.+..+ +...++++.+.+|.|||++|.|+|..+|. .++.|+++++.-
T Consensus 182 gf~~LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM 235 (435)
T COG0305 182 GFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEM 235 (435)
T ss_pred CchhhHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 34567777764 23357889999999999999999999995 567799999884
No 335
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=0.84 Score=46.63 Aligned_cols=36 Identities=36% Similarity=0.609 Sum_probs=26.1
Q ss_pred hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.|.+.+..+ -..-.+++|..|+||||+|..+|.++-
T Consensus 24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 24 ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 444544432 233567889999999999999998874
No 336
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=94.24 E-value=0.051 Score=50.09 Aligned_cols=36 Identities=36% Similarity=0.467 Sum_probs=29.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
....|++.+|-.||||||+|.-+|..| |- .-+|.+|
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rL---gI-~~visTD 122 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRL---GI-RSVISTD 122 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHc---CC-ceeecch
Confidence 345788999999999999999998865 44 3567887
No 337
>PRK07933 thymidylate kinase; Validated
Probab=94.24 E-value=0.071 Score=48.32 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=32.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++++-|--|+||||.+..|+.+|...|++|.++..-
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 567889999999999999999999999999988763
No 338
>PRK06761 hypothetical protein; Provisional
Probab=94.20 E-value=0.049 Score=51.50 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=32.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEE-EeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLI-ISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLL-iD~D~ 66 (365)
.++++++|..|+||||++..++..+...|.+|-. .+.|+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 3578999999999999999999999888888875 45554
No 339
>PTZ00301 uridine kinase; Provisional
Probab=94.15 E-value=0.099 Score=47.32 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=29.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH-CCC-CEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAE-VRP-SVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~-rVLLiD~D 65 (365)
.|+-++|-+|+||||+|..++..+.. .|- .|.++..|
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D 42 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICED 42 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCC
Confidence 57788999999999999999988753 343 46688887
No 340
>PRK13946 shikimate kinase; Provisional
Probab=94.14 E-value=0.058 Score=47.53 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=27.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++.+++.|-.|+||||++..||..| |.+ .+|.|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L---g~~--~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML---GLP--FLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCC--eECcC
Confidence 4567888999999999999999887 554 67888
No 341
>PRK09866 hypothetical protein; Provisional
Probab=94.13 E-value=0.54 Score=49.22 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
+.++.+-|..|+||||+.-++. |..|+-.+
T Consensus 69 ~~~valvG~sgaGKSTLiNaL~------G~~Vlpt~ 98 (741)
T PRK09866 69 EMVLAIVGTMKAGKSTTINAIV------GTEVLPNR 98 (741)
T ss_pred ceEEEEECCCCCCHHHHHHHHh------CCccccCC
Confidence 3566777999999999998874 55555444
No 342
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=94.13 E-value=0.067 Score=51.68 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=30.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 35 gKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
.-||+|||+++..||..+.++|++|.+|.=.-.+
T Consensus 58 ~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 58 TVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred eCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 3899999999999999999999999999866543
No 343
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.08 E-value=0.05 Score=46.69 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=25.3
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 32 ~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++.|..|+||||+|..++..+ | ..++|.|.-
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l---~--~~~v~~D~~ 32 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL---G--AKFIEGDDL 32 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc---C--CeEEeCccc
Confidence 577999999999999999876 3 456788753
No 344
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.06 E-value=3.1 Score=34.84 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=25.3
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|.............++..+...+.|+. +++|+.
T Consensus 86 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~ 123 (174)
T cd01895 86 DVVLLVIDATEGITEQDLRIAGLILEEGKALV-IVVNKW 123 (174)
T ss_pred CeEEEEEeCCCCcchhHHHHHHHHHhcCCCEE-EEEecc
Confidence 45666766544433455566777777787765 889998
No 345
>COG2403 Predicted GTPase [General function prediction only]
Probab=94.03 E-value=0.082 Score=51.25 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=36.6
Q ss_pred hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
|+....+.|.++.-.-|+|||+++..+|..|.++|+||++|-.
T Consensus 121 ~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 121 MLKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred hhhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 3333456677888788999999999999999999999999987
No 346
>PRK08118 topology modulation protein; Reviewed
Probab=93.99 E-value=0.054 Score=47.12 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=18.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+++.|.+|+||||+|..|+..+
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4566899999999999998765
No 347
>PRK04040 adenylate kinase; Provisional
Probab=93.98 E-value=0.072 Score=47.33 Aligned_cols=26 Identities=42% Similarity=0.379 Sum_probs=23.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
+++++++|..|+||||++..++..+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 46788899999999999999999885
No 348
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.93 E-value=0.05 Score=45.40 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=24.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|++++|..|+||||+|..||..+ |. -++|.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~---~~--~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL---GL--PYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CC--ceeccc
Confidence 57899999999999999999775 43 356666
No 349
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.90 E-value=0.075 Score=52.22 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=31.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
....+|++|.||+|||++--.+-..+...|+.|+++-.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~ 58 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAP 58 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecc
Confidence 34567999999999999999999998887777776543
No 350
>PRK13947 shikimate kinase; Provisional
Probab=93.88 E-value=0.086 Score=45.48 Aligned_cols=31 Identities=32% Similarity=0.359 Sum_probs=25.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+++.|-.|+||||++..||..| |.+ .+|.|.
T Consensus 4 I~l~G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 6778999999999999999876 554 477774
No 351
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.84 E-value=0.11 Score=46.06 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=29.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
+++++.|--|+||||++..|+..+...|+.|....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~ 38 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTR 38 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEee
Confidence 46777899999999999999999998887666543
No 352
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=93.81 E-value=0.083 Score=50.73 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 36 KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
-||+|||.++..||..|.++|++|.+|+=.-.
T Consensus 38 vGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 69 (311)
T TIGR00682 38 VGGTGKTPVVVWLAELLKDRGLRVGVLSRGYG 69 (311)
T ss_pred cCCcChHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 69999999999999999999999999986533
No 353
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.80 E-value=0.63 Score=49.70 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=27.1
Q ss_pred hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.|.+.+.++ -...++++|..|+||||++..+|..|-
T Consensus 27 ~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 27 ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555543 234557889999999999999999885
No 354
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.79 E-value=0.12 Score=47.75 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=56.1
Q ss_pred hhhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873 8 QDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (365)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~ 76 (365)
+++..+.+..|..+++.+.+..=+...|--|+|||++.-++...++..|.|++=|+-+-=.++..++..
T Consensus 32 ie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~ 100 (249)
T PF05673_consen 32 IERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDL 100 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHH
Confidence 455667788888888888766666778999999999999999999999999888877765677666654
No 355
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.78 E-value=0.073 Score=46.37 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVL 60 (365)
+.++|.+||||||+|-.|+ ..|+++.
T Consensus 3 I~ITGTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred EEEeCCCCCchHHHHHHHH----HhCCcee
Confidence 5667999999999999887 4566554
No 356
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.78 E-value=0.073 Score=52.17 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=34.4
Q ss_pred hhhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHH
Q 017873 8 QDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSIL 51 (365)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~ 51 (365)
.++.+=..-.-|++|++.+...-+++.|.+|+||||+|..+|..
T Consensus 28 GQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 28 GQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred ChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHh
Confidence 34444444555888888777777899999999999999999986
No 357
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.77 E-value=0.063 Score=42.97 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEV 55 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~ 55 (365)
+++.|.+|+|||+++..||..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999864
No 358
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.71 E-value=2.4 Score=37.59 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=28.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++++| .|-||||-|.-+|....-+|+||+++=+=
T Consensus 32 ~V~TG-~GKGKTTAAlG~alRa~GhG~rv~vvQFi 65 (198)
T COG2109 32 IVFTG-NGKGKTTAALGLALRALGHGLRVGVVQFI 65 (198)
T ss_pred EEEec-CCCChhHHHHHHHHHHhcCCCEEEEEEEe
Confidence 34444 45799999999999999999999999874
No 359
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.68 E-value=0.71 Score=48.49 Aligned_cols=37 Identities=38% Similarity=0.399 Sum_probs=27.8
Q ss_pred hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLAE 54 (365)
Q Consensus 18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la~ 54 (365)
.|.+++.++ -....+++|..|+||||+|..+|.++--
T Consensus 27 ~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 27 ALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455555543 3345688899999999999999998853
No 360
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.65 E-value=0.07 Score=53.01 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=26.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCE
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSV 59 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rV 59 (365)
=++++|.+|.||||+|.++|..++.+|+=|
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~GkiV 294 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQGKIV 294 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHHhcCcEE
Confidence 356789999999999999999999999933
No 361
>PLN03025 replication factor C subunit; Provisional
Probab=93.65 E-value=0.1 Score=50.21 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=33.7
Q ss_pred hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.|+.++.++...-+++.|..|+||||++..+|..+-..+++..+++.+.
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 3555555443334567999999999999999999865554444555543
No 362
>PLN02924 thymidylate kinase
Probab=93.55 E-value=0.14 Score=46.59 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=32.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..++++-|--|+||||.+..|+.+|..+|++|.++..
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~e 52 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRF 52 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeC
Confidence 3577778999999999999999999999999876654
No 363
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=93.54 E-value=0.11 Score=50.40 Aligned_cols=38 Identities=29% Similarity=0.254 Sum_probs=32.3
Q ss_pred EEEEeC--CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 30 WVFVGG--KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sg--KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++.++. -||+|||.++..||..|.++|++|.+++=.-.
T Consensus 58 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 97 (338)
T PRK01906 58 VVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYG 97 (338)
T ss_pred EEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 444443 89999999999999999999999999996644
No 364
>PRK03839 putative kinase; Provisional
Probab=93.45 E-value=0.094 Score=45.83 Aligned_cols=30 Identities=33% Similarity=0.410 Sum_probs=24.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.|-.|+||||++..||..+ |. -.+|+|
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~---~~--~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL---GY--EYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence 6777999999999999998876 33 457776
No 365
>PRK07261 topology modulation protein; Provisional
Probab=93.45 E-value=0.092 Score=45.78 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=18.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+++.|.+|+||||+|..|+..+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 4556899999999999987654
No 366
>PLN02348 phosphoribulokinase
Probab=93.38 E-value=0.16 Score=50.14 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=34.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC---------------CCCEEEEeCCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV---------------RPSVLIISTDPAH 68 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~---------------G~rVLLiD~D~~~ 68 (365)
+.+.|+-++|-.|+||||+|..|+..|... +..|.+|.+|--+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 345677899999999999999999999754 2468899998443
No 367
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=93.38 E-value=3.5 Score=36.09 Aligned_cols=20 Identities=40% Similarity=0.275 Sum_probs=16.1
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSI 50 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~ 50 (365)
+.+.|..|+||||+...+..
T Consensus 3 i~i~G~~~~GKstLi~~l~~ 22 (192)
T cd01889 3 VGVLGHVDSGKTSLAKALSE 22 (192)
T ss_pred EEEEecCCCCHHHHHHHHHh
Confidence 45668999999999877754
No 368
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.37 E-value=1.8 Score=46.04 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=27.0
Q ss_pred hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.|...+.++ -..-++++|..|+||||+|..+|..+-
T Consensus 27 ~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 27 ALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 355555443 334568889999999999999999875
No 369
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=93.33 E-value=0.11 Score=54.73 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
.++++.|.+|+||||+.+.+...+.+.|++||++.
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 46788999999999999999999999999999986
No 370
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.32 E-value=0.081 Score=46.13 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
++++++|-+|+||||+|-.|+..+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 478999999999999999998775
No 371
>PRK13808 adenylate kinase; Provisional
Probab=93.26 E-value=1.7 Score=42.17 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCC
Q 017873 197 GEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE 252 (365)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~g 252 (365)
..+.+...+..+++....+.+.+.+.. .+++...+...-.....+...|...+
T Consensus 143 ~~E~i~kRL~~Y~~~t~PLl~~Y~e~~---~lv~IDa~~siEEV~eeI~~~L~~~~ 195 (333)
T PRK13808 143 TPEVLAKRLASYRAQTEPLVHYYSEKR---KLLTVDGMMTIDEVTREIGRVLAAVG 195 (333)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHhhccC---cEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 455666677777777777788877642 34444444333334455555555443
No 372
>PRK00049 elongation factor Tu; Reviewed
Probab=93.23 E-value=1.2 Score=44.21 Aligned_cols=39 Identities=8% Similarity=0.009 Sum_probs=30.1
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+..-....+++.+..+...|+|..-+++|+.
T Consensus 100 D~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~ 138 (396)
T PRK00049 100 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKC 138 (396)
T ss_pred CEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeec
Confidence 466677666655557788899999999988765689999
No 373
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=93.22 E-value=0.13 Score=53.75 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=35.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++++-+.|..|+||||+...|...|..+|+||.+|-.|
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~ 47 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHA 47 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcC
Confidence 467777778899999999999999999999999999875
No 374
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.21 E-value=0.11 Score=43.61 Aligned_cols=43 Identities=23% Similarity=0.167 Sum_probs=32.1
Q ss_pred hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.++...+-..|...+. +..+++++|.-|+||||++..++..+.
T Consensus 5 ~~~t~~l~~~l~~~l~--~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLD--FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHHhCC--CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4455556666666663 345788899999999999999999873
No 375
>PRK12338 hypothetical protein; Provisional
Probab=93.21 E-value=0.085 Score=50.69 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.+++++|.+|+||||+|..+|..+ |.+ .+++.|
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l---~~~-~~~~tD 37 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL---NIK-HLIETD 37 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC---CCe-EEccCh
Confidence 4688999999999999999999876 553 466777
No 376
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.21 E-value=1.3 Score=46.83 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=26.4
Q ss_pred hHHhhhcCCC-eEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 18 SVRNILEQDS-LKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 18 ~l~~~~~~~~-~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.|.+.+.++. ....+++|..|+||||+|..+|..+-
T Consensus 27 ~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 27 ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3455554432 23457889999999999999999875
No 377
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.17 E-value=0.12 Score=49.55 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=33.2
Q ss_pred hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CCEEEEeC
Q 017873 17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLIIST 64 (365)
Q Consensus 17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G--~rVLLiD~ 64 (365)
..|...+.++....+++.|..|+||||++..+|..+...+ .+++.+++
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 3455555554433567889999999999999999886443 34555554
No 378
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.16 E-value=0.11 Score=44.81 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=25.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.+++.|-.|+||||++..||..+ |. -++|.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l---g~--~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL---GY--RFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---CC--CEEEcc
Confidence 346667999999999999999876 54 467888
No 379
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.16 E-value=0.13 Score=46.55 Aligned_cols=37 Identities=35% Similarity=0.399 Sum_probs=31.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
..|+-++|-+|+||||+|..+...+... ++.+|..|.
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~ 44 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDD 44 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccc
Confidence 3577888999999999999999988643 899999994
No 380
>PRK13973 thymidylate kinase; Provisional
Probab=93.04 E-value=0.18 Score=45.63 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=30.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+++++-|--|+||||.+..|+.+|...|++|.....
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~ 39 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTRE 39 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 456668999999999999999999999998866643
No 381
>PRK01184 hypothetical protein; Provisional
Probab=93.03 E-value=0.12 Score=45.32 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=23.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|.++++.|..|+||||++. + +.+.|..+ +|+|
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~---~~~~g~~~--i~~~ 32 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-I---AREMGIPV--VVMG 32 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-H---HHHcCCcE--EEhh
Confidence 4578899999999999864 3 34567644 6654
No 382
>PLN02200 adenylate kinase family protein
Probab=93.02 E-value=0.11 Score=47.68 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=22.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
...++++.|.+|+||||+|..+|..+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999998765
No 383
>PRK04195 replication factor C large subunit; Provisional
Probab=92.96 E-value=0.19 Score=51.28 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=31.1
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+...+.++++|..|+||||++.++|..+ |..++-+++..
T Consensus 36 g~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd 74 (482)
T PRK04195 36 GKPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASD 74 (482)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccc
Confidence 3346778899999999999999998865 77787777643
No 384
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.96 E-value=2.1 Score=44.99 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=27.8
Q ss_pred hhHHhhhcCCC-eEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 17 GSVRNILEQDS-LKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 17 ~~l~~~~~~~~-~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
..|.+++.++. ..-++++|..|+||||+|..+|.++-
T Consensus 26 ~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 26 AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 34556565432 34567889999999999999999874
No 385
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=92.95 E-value=0.12 Score=52.06 Aligned_cols=37 Identities=38% Similarity=0.486 Sum_probs=29.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+.+.+++++|-+|+||||++..+|..+ |. +.+|.+|.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~l---g~-~~ii~tD~ 289 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRL---GI-TRIVSTDA 289 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc---CC-cEEeehhH
Confidence 447888999999999999999999875 33 34788884
No 386
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=92.94 E-value=0.13 Score=49.72 Aligned_cols=38 Identities=32% Similarity=0.295 Sum_probs=32.1
Q ss_pred EEEEeC--CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 30 WVFVGG--KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sg--KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++.++. -||+|||-++..||..|.++|++|.+++=--.
T Consensus 37 VIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 37 VISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred EEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 444443 89999999999999999999999999987644
No 387
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=92.90 E-value=0.22 Score=48.09 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=36.8
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
.+++++++ |.--+||||++--|-.++.++|+|.+.+|+|++.+
T Consensus 102 ~GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~ 144 (415)
T KOG2749|consen 102 YGPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQG 144 (415)
T ss_pred cCCEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCC
Confidence 36677766 55679999999999999999999999999998744
No 388
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=92.85 E-value=0.12 Score=49.51 Aligned_cols=34 Identities=32% Similarity=0.288 Sum_probs=28.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+++++++|..|+|||++|..||..+ .+.+|++|.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRL-----NGEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccc
Confidence 4688999999999999999999865 356788884
No 389
>PRK03003 GTP-binding protein Der; Reviewed
Probab=92.84 E-value=0.71 Score=46.99 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=17.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILS 49 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA 49 (365)
+..+.+-|.+||||||+.-.+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~ 59 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRIL 59 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh
Confidence 3445666899999999988775
No 390
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.84 E-value=0.12 Score=52.08 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=33.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.-+++.|..|+|||+++.++|..+...|.+|+.++++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4467779999999999999999999889999999975
No 391
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.81 E-value=0.088 Score=45.97 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=24.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++++.|.+|+||||+|..||..+ | +..|+.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~---~--~~~is~~ 31 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF---G--FTHLSAG 31 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc---C--CeEEECC
Confidence 46888999999999999998865 3 4566654
No 392
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.79 E-value=0.22 Score=44.48 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=26.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEe
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIS 63 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD 63 (365)
+++++|..|+||||+..+++..+... +.+++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 57889999999999999998888754 34455444
No 393
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=92.78 E-value=0.71 Score=42.05 Aligned_cols=39 Identities=26% Similarity=0.208 Sum_probs=31.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCC-EEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPS-VLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~r-VLLiD~D~ 66 (365)
|-+++++|-+-+||||.|..|..+|..+|.| +..|--|.
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~de 40 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDE 40 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechh
Confidence 3468899999999999999999999999954 44444443
No 394
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.77 E-value=0.13 Score=48.66 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRP 57 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~ 57 (365)
-+++.|.+|+||||+|..+|..+...|.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 4677799999999999999999998775
No 395
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.77 E-value=0.2 Score=40.26 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEe
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEV--RPSVLIIS 63 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD 63 (365)
+++.+..|+|||+++..++..+... +.+++++-
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 5778999999999999999999863 46777774
No 396
>PRK13764 ATPase; Provisional
Probab=92.72 E-value=0.21 Score=52.17 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=29.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
..++++|..|+||||++.+++..+...|+.|+-++
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE 292 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME 292 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence 34688899999999999999999988887665655
No 397
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.71 E-value=0.17 Score=45.64 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=26.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CCEEEEe
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIIS 63 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G-~rVLLiD 63 (365)
..++++.|+.|+|||++|.+.|..+-..| ++-+++-
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45889999999999999999999888766 3444444
No 398
>PRK06851 hypothetical protein; Provisional
Probab=92.67 E-value=0.32 Score=47.77 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
...++++++|.+|+||||+...++..+...|+.|-.+=+-
T Consensus 28 ~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~ 67 (367)
T PRK06851 28 GANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCS 67 (367)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 4678899999999999999999999999999998877443
No 399
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.66 E-value=0.1 Score=44.42 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=18.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSIL 51 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~ 51 (365)
+.| ++.|.+|+||||++..+|..
T Consensus 8 PNI-LvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNI-LVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCE-EEeCCCCCCchhHHHHHHHH
Confidence 344 45589999999999999954
No 400
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.65 E-value=0.14 Score=51.07 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=32.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D 65 (365)
..+++.|..|+|||+++.++|..+.+. |.+|+.++++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 457889999999999999999999876 7889999765
No 401
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=92.63 E-value=0.14 Score=49.23 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=26.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..+++.|..|+||||++..||..+ |.+++ |+|
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~L---g~~~i--d~D 165 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARL---GVPFV--ELN 165 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCCEE--eHH
Confidence 467788999999999999998866 66654 777
No 402
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.60 E-value=0.17 Score=48.36 Aligned_cols=36 Identities=36% Similarity=0.389 Sum_probs=29.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEe
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIIS 63 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD 63 (365)
+..++++|..|+||||+..++...+... +.|++.|+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE 169 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE 169 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence 3456789999999999999999888764 67888876
No 403
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.57 E-value=0.21 Score=43.71 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=32.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D 65 (365)
++..+++.|..|||||.+|-.+|..+- ....+.+.+|+-
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s 41 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMS 41 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhh
Confidence 345678889999999999999999998 566788888886
No 404
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=92.50 E-value=1.1 Score=44.76 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=23.2
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..+..........+.++|++.+.|+. +|+|+.
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~pii-lVvNK~ 117 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVI-LVANKI 117 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE-EEEECc
Confidence 35566665544333444566777777777764 677887
No 405
>PRK13948 shikimate kinase; Provisional
Probab=92.48 E-value=0.19 Score=44.38 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=27.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
....+++.|-.|+||||++..||..+ |.+ +||+|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l---g~~--~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL---MLH--FIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc---CCC--EEECC
Confidence 34567788999999999999998876 554 45999
No 406
>PLN03127 Elongation factor Tu; Provisional
Probab=92.44 E-value=1.5 Score=44.27 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=29.9
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|.....-...++++.+..+...|++..-+++|+.
T Consensus 149 D~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKi 187 (447)
T PLN03127 149 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKV 187 (447)
T ss_pred CEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEee
Confidence 356666666554557789999999999998655789999
No 407
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=92.42 E-value=0.43 Score=42.63 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=23.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|.|+-.+|--|+||||++--+ ...| +-+||+|
T Consensus 1 M~iVGLTGgiatGKStVs~~f----~~~G--~~vIDaD 32 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVF----KALG--IPVIDAD 32 (225)
T ss_pred CeEEEeecccccChHHHHHHH----HHcC--CcEecHH
Confidence 356666777889999997654 3445 5789999
No 408
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.30 E-value=0.16 Score=47.45 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.+..++++|..|+||||+..++...+-..+.+++.|.-
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd 163 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED 163 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEecc
Confidence 45778888999999999999998888777788888884
No 409
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=92.27 E-value=0.2 Score=44.75 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=25.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.+.|..|+||||++..++..+ |. -++|+|
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~--~~i~~D 33 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GI--PILDAD 33 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CC--eEeeCc
Confidence 367888999999999999887532 65 456998
No 410
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.25 E-value=0.56 Score=55.62 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=36.9
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+..++.+ ..++.+++|-+|+||||+...+...+...|++|.++-..
T Consensus 438 v~~il~s-~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPT 483 (1960)
T TIGR02760 438 VSTLFTS-TKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAG 483 (1960)
T ss_pred HHHHHhC-CCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3444433 457888889999999999999999998999999998643
No 411
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.23 E-value=1.5 Score=47.83 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=26.6
Q ss_pred hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.|++++.++ -....+++|..|+||||+|..+|..+-
T Consensus 27 ~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 27 ALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 355555443 234457889999999999999999874
No 412
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.16 E-value=0.21 Score=35.99 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
+.+++|+.|+||||+--++-..|-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 678899999999999988877764
No 413
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=92.15 E-value=0.17 Score=44.39 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=24.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++.++|..|+||||++..++. .|. .++|+|
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~--~~i~~D 30 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGI--PVIDAD 30 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCC--CEEecC
Confidence 467889999999999998876 565 468888
No 414
>CHL00181 cbbX CbbX; Provisional
Probab=92.12 E-value=0.18 Score=47.86 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRP 57 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~ 57 (365)
+++.|.+|+||||+|..+|..+...|.
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 567799999999999999999887665
No 415
>PRK14528 adenylate kinase; Provisional
Probab=92.10 E-value=0.2 Score=44.29 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+.+++.|.+|+||||+|..+|..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 346778999999999999998765
No 416
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.08 E-value=0.16 Score=44.25 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
..++++.|..|+||||++..+|..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567778889999999999999765
No 417
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.98 E-value=0.24 Score=47.77 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=37.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
+++.|..|+||||++..+|..+ |.+..-|.+++.-+..+++|..
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCc
Confidence 6667999999999999999876 6788899999887778888854
No 418
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=91.88 E-value=5.1 Score=35.74 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=25.9
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..........+.+....+...+.+..-+|+|+.
T Consensus 102 d~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~ 140 (208)
T cd04166 102 DLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKM 140 (208)
T ss_pred CEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEch
Confidence 356666666544455666667777777876544679999
No 419
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=91.88 E-value=0.21 Score=44.44 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=26.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|.++.+.|.-|+||||++..|+. .|. -++|+|
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~----~g~--~~i~~D 33 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE----LGA--PVIDAD 33 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH----cCC--EEEEec
Confidence 46788889999999999998875 464 679999
No 420
>PLN02165 adenylate isopentenyltransferase
Probab=91.78 E-value=0.14 Score=49.39 Aligned_cols=40 Identities=28% Similarity=0.266 Sum_probs=29.9
Q ss_pred hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|+.+....++++.|..|+||||+|..||..+. .-+|++|.
T Consensus 37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l~-----~eIIsaDs 76 (334)
T PLN02165 37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRFP-----SEIINSDK 76 (334)
T ss_pred cccCCCCCEEEEECCCCCcHHHHHHHHHHHcC-----CceecCCh
Confidence 34444455788889999999999999888752 25788883
No 421
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.77 E-value=0.19 Score=50.80 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D 65 (365)
.-+++.|..|+|||+++.++|..+.+. |.+|+.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 457889999999999999999999876 7889999886
No 422
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=91.73 E-value=1.4 Score=45.61 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=28.6
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..+.......++.+++.++..++|+ -+++|+.
T Consensus 105 D~aIlVvDa~~gv~~~t~~l~~~~~~~~~Pi-ivviNKi 142 (527)
T TIGR00503 105 DNCLMVIDAAKGVETRTRKLMEVTRLRDTPI-FTFMNKL 142 (527)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEECc
Confidence 4667777665544556788888888889885 5788999
No 423
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.70 E-value=0.2 Score=42.09 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=24.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.|-.|+||||++..||..+ |.+ .+|.|
T Consensus 2 i~l~G~~GsGKstla~~la~~l---~~~--~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL---GLP--FVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCC--EEEch
Confidence 5678999999999999999876 554 55777
No 424
>PRK12736 elongation factor Tu; Reviewed
Probab=91.70 E-value=2.6 Score=41.79 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=29.7
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|.....-....+++.+..+...|++..-+++|+.
T Consensus 100 d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~ 138 (394)
T PRK12736 100 DGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKV 138 (394)
T ss_pred CEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEec
Confidence 356677666554556788888889999988666789999
No 425
>PRK08356 hypothetical protein; Provisional
Probab=91.69 E-value=0.28 Score=43.61 Aligned_cols=26 Identities=35% Similarity=0.225 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPS 58 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~r 58 (365)
.+++++|+.|+||||+|-.|+ +.|..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~----~~g~~ 31 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE----EKGFC 31 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH----HCCCc
Confidence 467889999999999999884 35765
No 426
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.67 E-value=0.19 Score=46.90 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=23.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVR 56 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G 56 (365)
-+++.|.+|+||||+|..+|..+...|
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 457789999999999999999986554
No 427
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.59 E-value=3 Score=45.41 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=27.1
Q ss_pred hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.|.+++.++ -..-++++|..|+||||+|..||..|-
T Consensus 26 ~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 26 PLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 355555543 234467889999999999999999884
No 428
>PRK13695 putative NTPase; Provisional
Probab=91.57 E-value=0.32 Score=42.25 Aligned_cols=30 Identities=37% Similarity=0.311 Sum_probs=24.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVL 60 (365)
+++.|.+|+||||+...++..+...|.++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 455688999999999999988877787764
No 429
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=91.57 E-value=0.23 Score=48.34 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=46.6
Q ss_pred chhhhhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 5 DQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|+-.++.+=....-|+.++++....-+++.|.+|+||||+|..+|..-....++-+=+++-
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 4445556656677788899887667789999999999999999998866666666555554
No 430
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.52 E-value=0.28 Score=46.59 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=33.6
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|...+.++....+++.|..|+||||++..++..+...+.+...++++
T Consensus 29 l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 29 LKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 44444444333458899999999999999999987666555556654
No 431
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.52 E-value=0.26 Score=43.29 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=23.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.|.+|+||||+|..||..+ | +..+++|
T Consensus 2 I~i~G~pGsGKst~a~~La~~~---~--~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY---G--LPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---C--CeEEECc
Confidence 5677899999999999998864 4 4567765
No 432
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.52 E-value=3.9 Score=42.26 Aligned_cols=35 Identities=40% Similarity=0.451 Sum_probs=25.7
Q ss_pred HHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 19 VRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 19 l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
|.+.+.++ -....+++|..|+||||+|..+|..+-
T Consensus 28 L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 28 LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44444442 334457889999999999999999874
No 433
>PLN02422 dephospho-CoA kinase
Probab=91.49 E-value=0.25 Score=45.42 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=25.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.++|.-|+||||++..|+ +.|. -++|+|
T Consensus 2 ~~igltG~igsGKstv~~~l~----~~g~--~~idaD 32 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK----SSGI--PVVDAD 32 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH----HCCC--eEEehh
Confidence 478889999999999999887 3566 469999
No 434
>PRK14527 adenylate kinase; Provisional
Probab=91.42 E-value=0.21 Score=44.09 Aligned_cols=25 Identities=36% Similarity=0.280 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
..++++.|.+|+||||+|..+|..+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577888999999999999998766
No 435
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.41 E-value=0.19 Score=43.06 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=16.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSIL 51 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~ 51 (365)
++++|-.|+||||++.+||..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 456688899999999999976
No 436
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.33 E-value=0.46 Score=45.09 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=25.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.-+++.|..|+|||+++.++|..+ +.++..++..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~ 64 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGP 64 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccc
Confidence 346788999999999999998866 3445555543
No 437
>PRK14531 adenylate kinase; Provisional
Probab=91.31 E-value=0.23 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
..+++.|.+|+||||++..||..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 346778999999999999998875
No 438
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=91.26 E-value=1.8 Score=44.68 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=28.9
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..+..-....++++++.+...++|+. +++|+.
T Consensus 104 D~aIlVvDa~~gv~~~t~~l~~~~~~~~iPii-v~iNK~ 141 (526)
T PRK00741 104 DSALMVIDAAKGVEPQTRKLMEVCRLRDTPIF-TFINKL 141 (526)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHhcCCCEE-EEEECC
Confidence 46677776654444567888999999999964 889999
No 439
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.24 E-value=4.5 Score=41.37 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=26.2
Q ss_pred hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.|...+.++ -....+++|..|+||||+|..+|..+-
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 27 ILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344455432 234457799999999999999999875
No 440
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=91.23 E-value=0.23 Score=44.44 Aligned_cols=39 Identities=28% Similarity=0.200 Sum_probs=34.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHC--C-CCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEV--R-PSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~--G-~rVLLiD~D 65 (365)
.+.++++||.-|+||||++.++-..+.+. + +++.-++.|
T Consensus 30 ~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvD 71 (282)
T KOG2878|consen 30 VPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVD 71 (282)
T ss_pred CcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEec
Confidence 35688999999999999999999999865 3 589999988
No 441
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=91.22 E-value=3.6 Score=41.58 Aligned_cols=39 Identities=10% Similarity=-0.025 Sum_probs=29.4
Q ss_pred eEEEEeecCCcch-------HHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLS-------LYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s-------~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+..-. -..|++.+..+..+|++..-|++|+.
T Consensus 110 D~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKm 155 (446)
T PTZ00141 110 DVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKM 155 (446)
T ss_pred CEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcc
Confidence 3556666654432 25889999999999998777899999
No 442
>PRK00625 shikimate kinase; Provisional
Probab=91.20 E-value=0.22 Score=43.56 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=24.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.|-.|+||||++-.+|..+ |. -.+|+|
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l---~~--~~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL---SL--PFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--CEEEhh
Confidence 6778999999999999998876 43 457877
No 443
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.19 E-value=0.21 Score=45.55 Aligned_cols=34 Identities=32% Similarity=0.367 Sum_probs=24.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..-+++.|.+|+||||+|.-+|..+ |.....+++
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg 83 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSG 83 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHC---T--EEEEEC
T ss_pred cceEEEECCCccchhHHHHHHHhcc---CCCeEeccc
Confidence 3456888999999999999888865 455555555
No 444
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=91.18 E-value=0.38 Score=49.17 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=33.4
Q ss_pred CCeEEEEEeC---CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhccc
Q 017873 26 DSLKWVFVGG---KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF 78 (365)
Q Consensus 26 ~~~~i~~~sg---KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~ 78 (365)
.++-|++++- +-|+||||++..|+.+|++.|+++.+.= .+||+.-+||.+-
T Consensus 53 ~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~l--RePSlGP~fG~KG 106 (557)
T PF01268_consen 53 DGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAAL--REPSLGPVFGIKG 106 (557)
T ss_dssp --EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEEE------CHHHHCST-
T ss_pred CCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEEE--ecCCCCCccCccc
Confidence 3455555543 7899999999999999999999887643 5678888898873
No 445
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.14 E-value=0.24 Score=50.01 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D 65 (365)
.-+++.|..|+|||+++.++|..+.+. +.+|+.++++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 347888999999999999999998864 6799999875
No 446
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=91.13 E-value=0.3 Score=52.63 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
++.++.|.+|+||||+...+...+...|++|.++-.
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~Ap 404 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAAL 404 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 578899999999999999998888888999998844
No 447
>PRK12739 elongation factor G; Reviewed
Probab=91.13 E-value=1.5 Score=46.82 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=29.1
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
.+++|.....-.-..+++++..+...|+|+. +++|+.
T Consensus 99 ~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~ 135 (691)
T PRK12739 99 GAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKM 135 (691)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECC
Confidence 5666666655445677899999999999986 899999
No 448
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.10 E-value=4.5 Score=39.19 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=26.4
Q ss_pred hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
..+.++.++ ...-.+++|..|+||+|+|.++|.++-
T Consensus 11 ~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 11 LWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred HHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 344455442 233457789999999999999999986
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.10 E-value=0.21 Score=43.42 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEV 55 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~ 55 (365)
.++++.|..|+||||++-.|+..+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 367888999999999999998876433
No 450
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=91.08 E-value=0.27 Score=43.84 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=25.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHH----CCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~----~G~rVLLiD~D 65 (365)
+++.|..|+|||++..+++..++. .+-++.++|.-
T Consensus 41 ~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 41 LLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred EEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 467789999999999999999997 34455566654
No 451
>PRK10436 hypothetical protein; Provisional
Probab=91.07 E-value=0.85 Score=46.28 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=29.1
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEE
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLi 62 (365)
+..++.. ..-+++++|..|+||||+-.++-..+...+.+++-|
T Consensus 210 l~~~~~~-~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~Ti 252 (462)
T PRK10436 210 FRQALQQ-PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSV 252 (462)
T ss_pred HHHHHHh-cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEe
Confidence 4444433 456788899999999999877666665555555443
No 452
>PRK12735 elongation factor Tu; Reviewed
Probab=91.07 E-value=3.5 Score=40.91 Aligned_cols=39 Identities=8% Similarity=0.009 Sum_probs=28.9
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|.....-....+.+.+..+...|++..-+++|+.
T Consensus 100 D~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~ 138 (396)
T PRK12735 100 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKC 138 (396)
T ss_pred CEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEec
Confidence 456666666554456777888888889988765679999
No 453
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.05 E-value=0.23 Score=46.10 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=22.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
+..++++.|..|+||||++..++..+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 355778899999999999999987765
No 454
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=91.05 E-value=0.33 Score=43.48 Aligned_cols=31 Identities=32% Similarity=0.370 Sum_probs=25.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++.+.|.-|+||||++..|+. .|. .++|+|
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~--~vid~D 32 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGF--LIVDAD 32 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCC--eEEeCc
Confidence 5678889999999999998873 576 579998
No 455
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=90.99 E-value=0.34 Score=43.60 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=26.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+.++.++|.-|+||||++..|+.. .|.. ++|+|
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~---lg~~--vidaD 38 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEK---LNLN--VVCAD 38 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHH---cCCe--EEecc
Confidence 3456788899999999999888753 3665 68998
No 456
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=90.97 E-value=0.53 Score=51.04 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=41.7
Q ss_pred hhhhhcchhhHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHHH----CC---CCEEEEeCC
Q 017873 9 DQELEIPEGSVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLAE----VR---PSVLIISTD 65 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la~----~G---~rVLLiD~D 65 (365)
+++++++..-|...+.+. +..+++++|+.|+|||+++..+...|.. .+ .+++-|.|-
T Consensus 761 EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 761 EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 466777777777777643 3467889999999999999999888752 22 345666663
No 457
>PRK00007 elongation factor G; Reviewed
Probab=90.97 E-value=1.6 Score=46.61 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=30.7
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
.+++|.....-...++++++..+...|+|+. +++|+.
T Consensus 101 ~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~ 137 (693)
T PRK00007 101 GAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKM 137 (693)
T ss_pred EEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECC
Confidence 5677776666666788999999999999986 999999
No 458
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.91 E-value=0.22 Score=43.97 Aligned_cols=25 Identities=28% Similarity=0.221 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
-.++++||..||||||+...|=...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678999999999999998876544
No 459
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=90.91 E-value=0.13 Score=46.99 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=36.1
Q ss_pred hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.|..+...+.+.-+++||.+|+||||....||..|--..++=.++.++
T Consensus 38 rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 38 RLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 455566666677788899999999999999999886444555555554
No 460
>CHL00071 tufA elongation factor Tu
Probab=90.89 E-value=3.4 Score=41.22 Aligned_cols=39 Identities=8% Similarity=0.023 Sum_probs=30.2
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+..-....+++.+..+...|+|..=+++|+.
T Consensus 100 D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~ 138 (409)
T CHL00071 100 DGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKE 138 (409)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEcc
Confidence 366777766655567888899999999998555789999
No 461
>PRK10536 hypothetical protein; Provisional
Probab=90.87 E-value=0.55 Score=43.81 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=32.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCCCChhhHhh
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~~~l~~~~~ 75 (365)
.++++.|..|+|||++|.++|..+- ...++.++| +.|.-+..+.+|
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI-~RP~v~~ge~LG 121 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV-TRPVLQADEDLG 121 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE-eCCCCCchhhhC
Confidence 4889999999999999999999654 444565555 344433344444
No 462
>PRK13975 thymidylate kinase; Provisional
Probab=90.79 E-value=0.28 Score=43.25 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.++++.|-.|+||||++..||..+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788889999999999999999884
No 463
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.78 E-value=0.3 Score=48.77 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=26.9
Q ss_pred hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
.|..++.+....-+++.|.+|+||||+|..+|..+
T Consensus 26 ~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 26 PLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 36666666555556678999999999999998754
No 464
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=90.78 E-value=0.56 Score=41.74 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=35.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
+..+-+.|..|+|||++-..+-..|... +++.+|-.|...
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t 52 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT 52 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec
Confidence 3667888999999999999999999877 999999999543
No 465
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.74 E-value=6.4 Score=41.22 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=26.6
Q ss_pred hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.|+.++.++ -....+++|..|+||||+|..+|.++-
T Consensus 24 ~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 24 PLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355555543 233457889999999999999998775
No 466
>PRK04182 cytidylate kinase; Provisional
Probab=90.71 E-value=0.24 Score=42.85 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=24.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++++|-.|+||||++..||..+ |. -++|+|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l---g~--~~id~~ 32 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL---GL--KHVSAG 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CC--cEecHH
Confidence 57888999999999999998875 54 345643
No 467
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.61 E-value=0.78 Score=46.91 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=29.7
Q ss_pred hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEE
Q 017873 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62 (365)
Q Consensus 18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLi 62 (365)
.|..++.. +.-+++++|..|+||||+..++-..+...+.+++-+
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTi 276 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTV 276 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEE
Confidence 34445543 345788999999999999987766555445555444
No 468
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=90.60 E-value=0.43 Score=46.98 Aligned_cols=36 Identities=31% Similarity=0.141 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++-+.|..|+||||++..+...|..+ ++|.++..+
T Consensus 6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~ 41 (369)
T PRK14490 6 FEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHG 41 (369)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC
Confidence 456667889999999999999999988 999999754
No 469
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.49 E-value=0.39 Score=43.67 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=31.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH--CCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~--~G~rVLLiD~D 65 (365)
..+|+.|..|+|||.+..+++..+.+ .+.+|+.++++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 35788999999999999999999885 47899999986
No 470
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.44 E-value=4.5 Score=42.38 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=27.2
Q ss_pred HHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC
Q 017873 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV 55 (365)
Q Consensus 19 l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~ 55 (365)
|...+.+ +...-.+++|..|+||||+|..+|.++--.
T Consensus 28 L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 28 LVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444433 334556788999999999999999998643
No 471
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=90.43 E-value=0.33 Score=42.29 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=25.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++.|-.|+||||++..+|..+ | .-++|+|.
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l---~--~~~vd~D~ 37 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSDQ 37 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc---C--CcEEECCc
Confidence 46777999999999999999875 3 34678874
No 472
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=90.39 E-value=0.35 Score=52.58 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=37.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhh
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQ 75 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~ 75 (365)
.++.|+.|+||||+...+...+...|.+|.++|.+.. ..+...++
T Consensus 441 ~~I~G~sGsGKS~l~~~l~~~~~~~g~~vviiD~g~sy~~l~~~l~ 486 (829)
T TIGR03783 441 KFILGPSGSGKSFFTNHLVRQYYEQGTHILLVDTGNSYQGLCELIH 486 (829)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcCCEEEEECCCccHHHHHHHhh
Confidence 3778999999999999999999999999999998754 44556663
No 473
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.37 E-value=0.31 Score=47.07 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=26.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
...++++|..|+||||++..+|..+ |.++..++..
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~ 85 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGP 85 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecc
Confidence 4467788999999999999998876 4445545443
No 474
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=90.27 E-value=0.36 Score=44.69 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=25.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|.++.++|.-|+||||++.-|+.. .|. -+||+|
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~---~G~--~viDaD 33 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREE---HHI--EVIDAD 33 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH---cCC--eEEehH
Confidence 356788899999999998877643 365 559999
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.25 E-value=0.25 Score=42.88 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+++++.|..|+||||++..|+..+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 467888999999999988888754
No 476
>PRK02496 adk adenylate kinase; Provisional
Probab=90.23 E-value=0.33 Score=42.53 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
++ +++.|.+|+||||++..||..+
T Consensus 2 ~~-i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TR-LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eE-EEEECCCCCCHHHHHHHHHHHh
Confidence 44 4556889999999999998876
No 477
>PRK14532 adenylate kinase; Provisional
Probab=90.22 E-value=0.25 Score=43.39 Aligned_cols=30 Identities=23% Similarity=0.173 Sum_probs=23.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.|.+|+||||+|..||..+ | ...||.|
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~---g--~~~is~~ 32 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER---G--MVQLSTG 32 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---C--CeEEeCc
Confidence 5668999999999999998654 4 3556765
No 478
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=90.22 E-value=0.61 Score=42.14 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=31.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..++++-|-=|+||||.+..|+.+|..+|.+|++.=-
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trE 39 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTRE 39 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3566777889999999999999999999998877654
No 479
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=90.20 E-value=3.4 Score=44.73 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=25.3
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 224 LTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 224 ~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
.+.+++|..+.. ......+..++.+.|+|+ -+++|+.
T Consensus 86 aD~vI~VvDat~--ler~l~l~~ql~e~giPv-IvVlNK~ 122 (772)
T PRK09554 86 ADLLINVVDASN--LERNLYLTLQLLELGIPC-IVALNML 122 (772)
T ss_pred CCEEEEEecCCc--chhhHHHHHHHHHcCCCE-EEEEEch
Confidence 356666766544 333445667788889887 4888999
No 480
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.16 E-value=0.33 Score=42.36 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=26.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++++.|..|+||||+|..++..+ |.+++.+++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCC
Confidence 57888999999999999998653 5566666654
No 481
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=90.10 E-value=4.1 Score=40.39 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=29.6
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|.....-....+.+.+..+...|++..-+++|+.
T Consensus 100 D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~ 138 (394)
T TIGR00485 100 DGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKC 138 (394)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEec
Confidence 356667666554557788889999999988765689999
No 482
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=90.04 E-value=0.32 Score=42.83 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=24.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++++|.-|+||||++..|+... |. -++|+|
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~---~~--~~i~~D 31 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY---HF--PVIDAD 31 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---CC--eEEeCC
Confidence 46788999999999998777642 34 468998
No 483
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.00 E-value=0.39 Score=52.58 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH-------CCCCEEEEeCC
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIISTD 65 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~-------~G~rVLLiD~D 65 (365)
+..+.-+++-|.+|||||+++..+|..+.. +|++++.+|+.
T Consensus 196 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~ 243 (857)
T PRK10865 196 RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 243 (857)
T ss_pred cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh
Confidence 344445566699999999999999999864 57889888887
No 484
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=89.99 E-value=0.29 Score=42.72 Aligned_cols=42 Identities=26% Similarity=0.390 Sum_probs=32.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC------CCCChhhHhhcc
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD------PAHNLSDAFQQR 77 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D------~~~~l~~~~~~~ 77 (365)
+|.-|--|+||||+.-.||..|.. =.+|+| ...+++++|...
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~-----~F~D~D~~Ie~~~g~sI~eIF~~~ 52 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNL-----PFIDTDQEIEKRTGMSIAEIFEEE 52 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCC-----CcccchHHHHHHHCcCHHHHHHHH
Confidence 455688899999999999998753 478999 457777777643
No 485
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=89.97 E-value=0.43 Score=48.78 Aligned_cols=49 Identities=14% Similarity=-0.062 Sum_probs=38.0
Q ss_pred CeEEEEEe---CCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873 27 SLKWVFVG---GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 27 ~~~i~~~s---gKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
++.|++++ -.-|+||||++..|+.+|.+.|+++++.= .++|+.=+||.+
T Consensus 63 gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~~l--RePSlGP~FGiK 114 (587)
T PRK13507 63 GKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSGAI--RQPSGGPTMNIK 114 (587)
T ss_pred CeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEEEE--ecCCcCCcCCcc
Confidence 45555444 37899999999999999999999887643 456777777766
No 486
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.93 E-value=1.1 Score=46.75 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=27.5
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVL 60 (365)
+..++.. ..-+++++|..|+||||+-.++...+...+.+++
T Consensus 308 l~~~~~~-~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~ 348 (564)
T TIGR02538 308 FLEAIHK-PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNIS 348 (564)
T ss_pred HHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEE
Confidence 4444433 4567889999999999998776666544344433
No 487
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=89.85 E-value=0.32 Score=43.19 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHH-HHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSIL-SILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~l-A~~la~~G~rVLLiD~D 65 (365)
|.++.|+.|+|||+.|+.. ....-+.|.+|.. ..+
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~ 37 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIP 37 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---T
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccC
Confidence 5688999999999999998 6555567776665 554
No 488
>PLN03126 Elongation factor Tu; Provisional
Probab=89.85 E-value=4.9 Score=41.06 Aligned_cols=39 Identities=8% Similarity=0.018 Sum_probs=30.2
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|.....-....+++.+..+...|++..-+++|+.
T Consensus 169 D~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~ 207 (478)
T PLN03126 169 DGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQ 207 (478)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 356667666555567888999999999998666789999
No 489
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.81 E-value=2.7 Score=41.32 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=46.7
Q ss_pred hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCCCCCChhhHhh
Q 017873 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D~~~~l~~~~~ 75 (365)
+++++++..-|...+.+..+.-+++-|+.|+|||+++-.++..+-.. +.-+.-|+|=.-++...++.
T Consensus 23 e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 23 EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHH
Confidence 45556666666666666555546667999999999999999999854 33378888876555544443
No 490
>PRK07429 phosphoribulokinase; Provisional
Probab=89.76 E-value=0.43 Score=46.23 Aligned_cols=38 Identities=39% Similarity=0.371 Sum_probs=28.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
...++-+.|..|+||||++..++..+... .+.++..|-
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd 44 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDD 44 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEecc
Confidence 44677888999999999999999777543 355666663
No 491
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.71 E-value=2.1 Score=43.48 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=31.8
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEE
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLi 62 (365)
+.+++. .+.-++.++|.-|+||||+=.++-..+....++++-|
T Consensus 250 ~~~~~~-~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 250 LLRLLN-RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred HHHHHh-CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence 444443 3567888999999999999998888887766664443
No 492
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=89.70 E-value=0.27 Score=42.53 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSIL 51 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~ 51 (365)
+++++.|..||||||+.-+|.-.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 67788899999999998877654
No 493
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=89.69 E-value=15 Score=38.85 Aligned_cols=39 Identities=8% Similarity=-0.055 Sum_probs=30.7
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|...+.-....+...+..+...|++..-||+|+.
T Consensus 76 D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKi 114 (614)
T PRK10512 76 DHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKA 114 (614)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECC
Confidence 456777776665667888888889999988666899999
No 494
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=89.69 E-value=0.47 Score=42.64 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=24.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.++-++|+.|+||||+|--++ +.|. -+||+|
T Consensus 2 ~~iIglTG~igsGKStva~~~~----~~G~--~vidaD 33 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILA----ELGF--PVIDAD 33 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHH----HcCC--eEEEcc
Confidence 5677788999999999876554 4554 678998
No 495
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=89.66 E-value=0.61 Score=40.81 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=31.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+++++|==|+||||+--++.. ....|.|+.+|-.|..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g 38 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFG 38 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTT
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccc
Confidence 567889999999999999998 6678999999999876
No 496
>PRK10646 ADP-binding protein; Provisional
Probab=89.64 E-value=0.44 Score=40.88 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=34.7
Q ss_pred hhhhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 7 DQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.+.++...+-..|-..+.. ..++...|-=|+||||++..++.+|.
T Consensus 9 ~s~~~t~~l~~~la~~l~~--g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 9 PDEQATLDLGARVAKACDG--ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CCHHHHHHHHHHHHHhCCC--CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455666666677766643 35788999999999999999999884
No 497
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=89.63 E-value=0.78 Score=43.12 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=29.8
Q ss_pred hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CCEEEEeCCC
Q 017873 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR----PSVLIISTDP 66 (365)
Q Consensus 22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G----~rVLLiD~D~ 66 (365)
++......+++. |-.|+||||+.+.-...+...+ .++|++.+..
T Consensus 8 ~i~~~~~~~lV~-a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~ 55 (315)
T PF00580_consen 8 IIRSTEGPLLVN-AGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTN 55 (315)
T ss_dssp HHHS-SSEEEEE-E-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSH
T ss_pred HHhCCCCCEEEE-eCCCCCchHHHHHHHHHhhccccCChHHheecccCH
Confidence 343322334444 4599999999988887777554 6899999873
No 498
>PRK13976 thymidylate kinase; Provisional
Probab=89.62 E-value=0.55 Score=42.42 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=29.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-C-CCEEEEeCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPA 67 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~-G-~rVLLiD~D~~ 67 (365)
++++-|--|+||||.+..|+.+|... | ++|.+. ..|.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~-~eP~ 40 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT-REPG 40 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe-eCCC
Confidence 56788999999999999999999986 6 566544 4444
No 499
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=89.51 E-value=0.27 Score=46.37 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=26.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|+.+.|..|+||||++..|+..+...| +.++.+|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~D 34 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLD 34 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECc
Confidence 356779999999999999998775443 5566666
No 500
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.49 E-value=0.35 Score=41.45 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=24.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++++|-.|+||||++..+|..+ |.. ++|.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~--~~~~~ 32 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLK--LISAG 32 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCc--eecHH
Confidence 67889999999999999998764 554 56654
Done!