Query 017873
Match_columns 365
No_of_seqs 317 out of 2702
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 06:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iqw_A Tail-anchored protein t 100.0 3.5E-55 1.2E-59 421.5 26.9 315 14-329 2-328 (334)
2 3io3_A DEHA2D07832P; chaperone 100.0 1.9E-55 6.6E-60 425.3 23.6 319 14-339 4-347 (348)
3 3ug7_A Arsenical pump-driving 100.0 6.6E-50 2.3E-54 387.7 32.9 321 7-329 4-340 (349)
4 2woo_A ATPase GET3; tail-ancho 100.0 1.7E-49 5.6E-54 382.0 27.0 318 11-331 2-327 (329)
5 3zq6_A Putative arsenical pump 100.0 6.4E-48 2.2E-52 370.2 32.4 306 19-328 3-324 (324)
6 2woj_A ATPase GET3; tail-ancho 100.0 6.4E-48 2.2E-52 374.2 26.3 315 15-336 5-349 (354)
7 3igf_A ALL4481 protein; two-do 100.0 1.2E-42 4E-47 338.2 17.2 265 27-321 1-286 (374)
8 1ihu_A Arsenical pump-driving 100.0 5.7E-36 1.9E-40 308.7 14.6 275 26-321 6-295 (589)
9 1ihu_A Arsenical pump-driving 100.0 1E-31 3.5E-36 277.0 20.6 259 17-320 313-584 (589)
10 3la6_A Tyrosine-protein kinase 99.9 8.9E-25 3E-29 205.7 15.2 190 6-263 70-264 (286)
11 3bfv_A CAPA1, CAPB2, membrane 99.9 1.1E-23 3.8E-28 196.7 13.8 191 5-263 59-254 (271)
12 3cio_A ETK, tyrosine-protein k 99.9 2E-23 6.8E-28 197.7 14.1 190 6-263 82-276 (299)
13 3kjh_A CO dehydrogenase/acetyl 99.9 4.1E-22 1.4E-26 182.0 16.0 173 28-263 1-193 (254)
14 3end_A Light-independent proto 99.9 1.5E-21 5E-26 185.0 19.8 188 11-263 24-223 (307)
15 2ph1_A Nucleotide-binding prot 99.9 8.7E-22 3E-26 182.6 14.7 169 25-263 16-192 (262)
16 3fwy_A Light-independent proto 99.9 3.6E-21 1.2E-25 183.2 16.0 177 26-263 47-230 (314)
17 1wcv_1 SOJ, segregation protei 99.9 1.7E-21 6E-26 179.9 12.9 55 23-77 2-56 (257)
18 2oze_A ORF delta'; para, walke 99.9 4.5E-21 1.5E-25 180.7 15.8 175 17-263 24-222 (298)
19 3k9g_A PF-32 protein; ssgcid, 99.9 1.8E-21 6.3E-26 180.5 12.8 189 10-263 10-207 (267)
20 3ea0_A ATPase, para family; al 99.9 1.5E-21 5E-26 178.2 11.8 168 26-264 3-183 (245)
21 4dzz_A Plasmid partitioning pr 99.9 8.8E-21 3E-25 168.4 15.3 134 28-263 2-140 (206)
22 1hyq_A MIND, cell division inh 99.8 1.7E-20 5.8E-25 173.3 17.0 167 27-263 2-172 (263)
23 3pg5_A Uncharacterized protein 99.8 2.1E-20 7.3E-25 181.4 16.8 50 27-76 1-50 (361)
24 1g3q_A MIND ATPase, cell divis 99.8 2.2E-20 7.5E-25 169.7 14.6 168 27-264 2-174 (237)
25 3ez2_A Plasmid partition prote 99.8 5E-20 1.7E-24 180.9 18.1 52 26-77 107-164 (398)
26 3q9l_A Septum site-determining 99.8 6.8E-20 2.3E-24 168.6 16.3 172 27-263 2-183 (260)
27 2afh_E Nitrogenase iron protei 99.8 1.7E-19 6E-24 169.2 15.9 48 28-76 3-50 (289)
28 1cp2_A CP2, nitrogenase iron p 99.8 2.7E-19 9.1E-24 165.8 14.6 47 28-75 2-48 (269)
29 3ez9_A Para; DNA binding, wing 99.8 1.1E-19 3.6E-24 178.9 12.5 54 25-78 109-168 (403)
30 3cwq_A Para family chromosome 99.8 7.2E-19 2.5E-23 157.7 12.1 128 28-263 1-130 (209)
31 3fkq_A NTRC-like two-domain pr 99.8 1.8E-18 6.2E-23 168.4 13.0 54 25-78 141-194 (373)
32 2xj4_A MIPZ; replication, cell 99.8 6.7E-19 2.3E-23 165.3 7.8 50 28-77 5-55 (286)
33 1byi_A Dethiobiotin synthase; 99.7 1.2E-16 4.2E-21 143.7 16.5 202 28-305 2-207 (224)
34 2xxa_A Signal recognition part 99.5 1.4E-13 4.8E-18 136.2 15.7 43 28-70 100-143 (433)
35 1j8m_F SRP54, signal recogniti 99.4 2.8E-12 9.5E-17 120.9 15.9 44 28-71 98-141 (297)
36 1zu4_A FTSY; GTPase, signal re 99.4 1.9E-11 6.5E-16 116.4 19.1 42 28-69 105-146 (320)
37 1yrb_A ATP(GTP)binding protein 99.3 9.8E-11 3.4E-15 107.3 21.1 44 27-71 13-56 (262)
38 1ls1_A Signal recognition part 99.3 8.1E-12 2.8E-16 117.6 12.7 44 27-71 98-141 (295)
39 3dm5_A SRP54, signal recogniti 99.3 9.9E-12 3.4E-16 122.7 13.4 58 12-69 76-141 (443)
40 2ffh_A Protein (FFH); SRP54, s 99.3 2E-11 6.8E-16 120.2 14.6 44 28-71 98-141 (425)
41 3fgn_A Dethiobiotin synthetase 99.3 3.9E-10 1.3E-14 103.6 20.1 222 14-323 13-242 (251)
42 2j37_W Signal recognition part 99.2 1.4E-10 4.9E-15 116.5 15.3 44 28-71 101-144 (504)
43 3of5_A Dethiobiotin synthetase 99.2 9.4E-10 3.2E-14 99.6 16.2 65 226-302 142-206 (228)
44 2r8r_A Sensor protein; KDPD, P 99.1 2.7E-10 9.2E-15 102.5 11.3 49 25-73 3-51 (228)
45 3kl4_A SRP54, signal recogniti 99.1 4.6E-10 1.6E-14 110.7 13.6 41 28-68 97-137 (433)
46 2v3c_C SRP54, signal recogniti 99.1 1.9E-10 6.6E-15 113.7 8.8 41 29-69 100-140 (432)
47 1vma_A Cell division protein F 99.1 2.6E-09 8.9E-14 100.9 16.2 41 28-68 104-144 (306)
48 3qxc_A Dethiobiotin synthetase 99.0 6.6E-09 2.3E-13 94.8 16.6 38 225-263 162-199 (242)
49 2px0_A Flagellar biosynthesis 99.0 7.1E-09 2.4E-13 97.5 15.6 40 29-68 106-146 (296)
50 3p32_A Probable GTPase RV1496/ 98.8 1.2E-08 4.2E-13 98.2 10.3 44 27-70 78-121 (355)
51 2yhs_A FTSY, cell division pro 98.3 1.6E-05 5.5E-10 79.2 15.8 40 29-68 294-333 (503)
52 1g5t_A COB(I)alamin adenosyltr 98.2 1.4E-05 4.7E-10 70.2 11.1 38 29-67 30-67 (196)
53 2p67_A LAO/AO transport system 98.1 1.4E-05 4.6E-10 76.4 10.6 43 28-70 56-98 (341)
54 1u94_A RECA protein, recombina 98.0 1.5E-05 5.2E-10 76.6 9.9 53 16-68 48-103 (356)
55 3pzx_A Formate--tetrahydrofola 97.9 1.5E-05 5E-10 78.4 7.3 52 26-79 56-110 (557)
56 3e70_C DPA, signal recognition 97.9 0.00017 5.8E-09 68.4 14.3 41 27-67 128-168 (328)
57 1xp8_A RECA protein, recombina 97.9 6.7E-05 2.3E-09 72.3 11.2 53 16-68 59-114 (366)
58 2cvh_A DNA repair and recombin 97.8 4.1E-05 1.4E-09 67.3 7.3 53 16-71 6-60 (220)
59 1rj9_A FTSY, signal recognitio 97.7 0.0014 4.8E-08 61.4 16.5 39 29-67 103-141 (304)
60 2dr3_A UPF0273 protein PH0284; 97.6 0.00033 1.1E-08 62.5 10.8 52 16-67 9-62 (247)
61 2zr9_A Protein RECA, recombina 97.6 0.00018 6.1E-09 68.9 9.4 52 16-67 46-100 (349)
62 2obn_A Hypothetical protein; s 97.6 0.0016 5.4E-08 62.0 15.2 37 27-63 152-188 (349)
63 4a0g_A Adenosylmethionine-8-am 97.5 0.0049 1.7E-07 65.5 20.0 38 226-263 233-270 (831)
64 3io5_A Recombination and repai 97.5 0.00046 1.6E-08 65.0 9.9 54 16-69 11-71 (333)
65 3hr8_A Protein RECA; alpha and 97.5 0.00072 2.5E-08 64.8 11.5 56 14-69 44-102 (356)
66 2hf9_A Probable hydrogenase ni 97.5 0.00013 4.5E-09 64.5 5.6 52 16-68 26-77 (226)
67 2og2_A Putative signal recogni 97.4 0.0069 2.3E-07 58.0 16.9 41 28-68 157-197 (359)
68 1v5w_A DMC1, meiotic recombina 97.3 0.0017 5.7E-08 61.8 11.8 52 16-67 108-167 (343)
69 2z43_A DNA repair and recombin 97.3 0.00093 3.2E-08 63.0 9.9 52 16-67 93-152 (324)
70 1xjc_A MOBB protein homolog; s 97.3 0.00033 1.1E-08 60.0 6.1 41 27-67 3-43 (169)
71 2yvu_A Probable adenylyl-sulfa 97.2 0.00034 1.2E-08 60.1 5.5 39 27-65 12-50 (186)
72 2zts_A Putative uncharacterize 97.2 0.00073 2.5E-08 60.3 7.8 52 16-67 16-70 (251)
73 3b9q_A Chloroplast SRP recepto 97.2 0.01 3.4E-07 55.5 15.3 40 29-68 101-140 (302)
74 1n0w_A DNA repair protein RAD5 97.1 0.00097 3.3E-08 59.3 7.9 52 16-67 10-69 (243)
75 2wsm_A Hydrogenase expression/ 97.1 0.00044 1.5E-08 60.8 4.6 50 19-69 21-70 (221)
76 3cmu_A Protein RECA, recombina 97.0 0.0011 3.9E-08 75.7 8.1 56 12-67 1408-1466(2050)
77 3cmw_A Protein RECA, recombina 97.0 0.0036 1.2E-07 70.8 11.9 101 16-153 1416-1521(1706)
78 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00075 2.5E-08 61.5 5.4 38 28-65 4-41 (260)
79 3bh0_A DNAB-like replicative h 96.9 0.0012 4E-08 62.1 6.1 52 16-67 55-107 (315)
80 3cmw_A Protein RECA, recombina 96.9 0.0044 1.5E-07 70.0 11.4 54 16-69 368-424 (1706)
81 3bgw_A DNAB-like replicative h 96.8 0.0012 4.1E-08 65.2 5.6 52 16-67 184-236 (444)
82 1nks_A Adenylate kinase; therm 96.8 0.001 3.5E-08 56.8 4.4 38 28-65 1-38 (194)
83 2i1q_A DNA repair and recombin 96.8 0.0013 4.3E-08 61.9 5.2 52 16-67 84-153 (322)
84 4a1f_A DNAB helicase, replicat 96.7 0.0015 5.3E-08 62.0 5.8 52 16-67 33-85 (338)
85 3bos_A Putative DNA replicatio 96.7 0.002 6.9E-08 56.7 5.8 49 17-65 41-89 (242)
86 2w58_A DNAI, primosome compone 96.7 0.0023 7.9E-08 55.4 6.0 37 29-65 55-91 (202)
87 2www_A Methylmalonic aciduria 96.6 0.0073 2.5E-07 57.5 9.7 42 28-69 74-115 (349)
88 1rz3_A Hypothetical protein rb 96.6 0.0025 8.6E-08 55.5 5.9 40 27-66 21-60 (201)
89 3lda_A DNA repair protein RAD5 96.6 0.0033 1.1E-07 61.2 6.9 52 16-67 164-223 (400)
90 3cmu_A Protein RECA, recombina 96.6 0.0058 2E-07 70.0 9.8 54 16-69 368-424 (2050)
91 1s1m_A CTP synthase; CTP synth 96.6 0.015 5E-07 58.6 11.6 40 28-67 4-44 (545)
92 1np6_A Molybdopterin-guanine d 96.5 0.0036 1.2E-07 53.6 6.0 41 27-67 5-45 (174)
93 1vco_A CTP synthetase; tetrame 96.5 0.02 6.7E-07 57.8 11.9 40 28-67 13-53 (550)
94 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0036 1.2E-07 54.9 5.9 52 16-67 9-62 (235)
95 3ec2_A DNA replication protein 96.4 0.0022 7.6E-08 54.6 4.3 37 28-64 38-75 (180)
96 2qm8_A GTPase/ATPase; G protei 96.4 0.012 4E-07 55.9 9.7 40 28-67 55-94 (337)
97 2q6t_A DNAB replication FORK h 96.3 0.0043 1.5E-07 61.1 6.2 52 16-67 187-240 (444)
98 1pzn_A RAD51, DNA repair and r 96.3 0.013 4.5E-07 55.8 9.0 52 16-67 117-176 (349)
99 1uj2_A Uridine-cytidine kinase 96.3 0.0033 1.1E-07 56.8 4.5 40 27-66 21-65 (252)
100 1q57_A DNA primase/helicase; d 96.3 0.0033 1.1E-07 62.9 4.9 52 16-67 229-282 (503)
101 2qby_B CDC6 homolog 3, cell di 96.2 0.0036 1.2E-07 59.5 4.8 57 9-65 26-90 (384)
102 2r6a_A DNAB helicase, replicat 96.2 0.0069 2.4E-07 59.8 6.7 51 17-67 191-243 (454)
103 2ehv_A Hypothetical protein PH 96.2 0.0084 2.9E-07 53.3 6.7 52 16-67 16-70 (251)
104 2v1u_A Cell division control p 96.1 0.0047 1.6E-07 58.5 5.2 61 9-69 25-91 (387)
105 1wf3_A GTP-binding protein; GT 96.1 0.015 5.2E-07 54.1 8.5 39 224-263 87-127 (301)
106 4a74_A DNA repair and recombin 96.1 0.013 4.3E-07 51.4 7.3 52 16-67 11-70 (231)
107 1a7j_A Phosphoribulokinase; tr 96.1 0.0032 1.1E-07 58.5 3.5 41 28-68 5-45 (290)
108 1m7g_A Adenylylsulfate kinase; 96.0 0.0065 2.2E-07 53.2 5.2 47 19-65 16-63 (211)
109 1kht_A Adenylate kinase; phosp 96.0 0.0047 1.6E-07 52.6 4.1 37 29-65 4-40 (192)
110 1fnn_A CDC6P, cell division co 96.0 0.0092 3.2E-07 56.6 6.4 62 9-70 23-87 (389)
111 2pez_A Bifunctional 3'-phospho 96.0 0.0076 2.6E-07 51.1 5.3 37 29-65 6-42 (179)
112 2rdo_7 EF-G, elongation factor 96.0 0.023 7.9E-07 59.2 9.8 38 225-263 107-144 (704)
113 1jbk_A CLPB protein; beta barr 96.0 0.0087 3E-07 50.2 5.5 29 26-54 41-69 (195)
114 1w5s_A Origin recognition comp 95.9 0.0069 2.4E-07 58.1 5.2 62 10-71 29-101 (412)
115 3uie_A Adenylyl-sulfate kinase 95.9 0.0099 3.4E-07 51.5 5.7 39 27-65 24-62 (200)
116 3te6_A Regulatory protein SIR3 95.8 0.011 3.8E-07 55.6 6.1 46 9-54 26-71 (318)
117 3iev_A GTP-binding protein ERA 95.8 0.015 5E-07 54.3 6.9 38 225-263 94-132 (308)
118 2qby_A CDC6 homolog 1, cell di 95.8 0.0058 2E-07 57.8 3.9 61 9-69 26-89 (386)
119 2p65_A Hypothetical protein PF 95.7 0.0088 3E-07 50.2 4.6 30 25-54 40-69 (187)
120 2gks_A Bifunctional SAT/APS ki 95.7 0.0092 3.2E-07 60.4 5.3 38 28-65 372-409 (546)
121 2z0h_A DTMP kinase, thymidylat 95.7 0.016 5.6E-07 49.4 6.2 35 30-64 2-36 (197)
122 2pbr_A DTMP kinase, thymidylat 95.7 0.014 4.9E-07 49.6 5.9 34 30-63 2-35 (195)
123 1qhx_A CPT, protein (chloramph 95.7 0.0068 2.3E-07 51.1 3.6 34 29-65 4-37 (178)
124 2qgz_A Helicase loader, putati 95.7 0.011 3.8E-07 55.2 5.3 38 28-65 152-190 (308)
125 1gvn_B Zeta; postsegregational 95.6 0.0082 2.8E-07 55.5 4.1 37 26-65 31-67 (287)
126 2b8t_A Thymidine kinase; deoxy 95.6 0.017 5.7E-07 51.6 5.9 35 29-63 13-47 (223)
127 4dhe_A Probable GTP-binding pr 95.5 0.74 2.5E-05 39.6 16.4 38 225-263 117-154 (223)
128 2kjq_A DNAA-related protein; s 95.4 0.015 5.2E-07 48.2 4.9 37 29-65 37-73 (149)
129 1cr0_A DNA primase/helicase; R 95.3 0.019 6.4E-07 52.9 5.6 50 17-66 23-74 (296)
130 1ly1_A Polynucleotide kinase; 95.3 0.014 4.8E-07 49.0 4.3 34 28-65 2-35 (181)
131 3n70_A Transport activator; si 95.3 0.01 3.4E-07 48.8 3.3 53 10-65 8-60 (145)
132 2orw_A Thymidine kinase; TMTK, 95.3 0.015 5.3E-07 50.0 4.5 36 29-64 4-39 (184)
133 2plr_A DTMP kinase, probable t 95.3 0.024 8.3E-07 48.8 5.9 35 29-64 5-39 (213)
134 1nn5_A Similar to deoxythymidy 95.3 0.021 7.1E-07 49.5 5.4 36 29-64 10-45 (215)
135 3tqc_A Pantothenate kinase; bi 95.3 0.022 7.6E-07 53.6 5.9 41 26-66 90-132 (321)
136 2ze6_A Isopentenyl transferase 95.2 0.017 5.8E-07 52.3 4.6 34 28-66 1-34 (253)
137 1xx6_A Thymidine kinase; NESG, 95.1 0.033 1.1E-06 48.3 6.3 35 29-63 9-43 (191)
138 3c8u_A Fructokinase; YP_612366 95.1 0.035 1.2E-06 48.3 6.5 40 27-66 21-60 (208)
139 3t61_A Gluconokinase; PSI-biol 95.1 0.013 4.3E-07 50.8 3.4 34 28-66 18-51 (202)
140 2vo1_A CTP synthase 1; pyrimid 95.0 0.18 6.1E-06 45.8 10.8 42 26-67 22-64 (295)
141 3trf_A Shikimate kinase, SK; a 95.0 0.012 4.1E-07 49.9 3.0 33 28-65 5-37 (185)
142 1m8p_A Sulfate adenylyltransfe 95.0 0.021 7.2E-07 58.1 5.2 38 28-65 396-434 (573)
143 2chg_A Replication factor C sm 95.0 0.0097 3.3E-07 51.2 2.3 40 19-58 29-68 (226)
144 2p5t_B PEZT; postsegregational 94.9 0.018 6.3E-07 51.9 4.2 38 26-66 30-67 (253)
145 3kb2_A SPBC2 prophage-derived 94.9 0.017 5.9E-07 48.0 3.7 33 29-66 2-34 (173)
146 2h5e_A Peptide chain release f 94.9 0.069 2.3E-06 53.7 8.5 38 225-263 107-144 (529)
147 2c5m_A CTP synthase; cytidine 94.8 0.31 1.1E-05 44.0 11.6 41 27-67 23-64 (294)
148 2axn_A 6-phosphofructo-2-kinas 94.8 0.026 9E-07 56.6 5.4 41 26-66 33-73 (520)
149 1x6v_B Bifunctional 3'-phospho 94.8 0.027 9.3E-07 57.7 5.5 39 27-65 51-89 (630)
150 2wwf_A Thymidilate kinase, put 94.8 0.03 1E-06 48.4 5.1 35 29-63 11-45 (212)
151 4eun_A Thermoresistant glucoki 94.7 0.027 9.3E-07 48.7 4.4 40 22-66 23-62 (200)
152 3upu_A ATP-dependent DNA helic 94.6 0.044 1.5E-06 53.9 6.4 36 30-65 47-83 (459)
153 2rhm_A Putative kinase; P-loop 94.6 0.022 7.7E-07 48.4 3.8 33 28-65 5-37 (193)
154 3lw7_A Adenylate kinase relate 94.6 0.018 6E-07 47.8 3.0 28 29-60 2-29 (179)
155 3ld9_A DTMP kinase, thymidylat 94.6 0.034 1.2E-06 49.5 5.0 42 28-69 21-63 (223)
156 3d3q_A TRNA delta(2)-isopenten 94.6 0.03 1E-06 53.1 4.8 35 28-67 7-41 (340)
157 3foz_A TRNA delta(2)-isopenten 94.5 0.049 1.7E-06 51.0 5.9 40 22-66 4-43 (316)
158 1gtv_A TMK, thymidylate kinase 94.5 0.012 4E-07 51.2 1.6 35 30-64 2-36 (214)
159 1odf_A YGR205W, hypothetical 3 94.5 0.034 1.2E-06 51.5 4.8 41 26-66 29-72 (290)
160 4fcw_A Chaperone protein CLPB; 94.4 0.042 1.4E-06 50.5 5.4 39 28-66 47-85 (311)
161 2r2a_A Uncharacterized protein 94.4 0.027 9.3E-07 49.2 3.8 39 27-65 4-48 (199)
162 1l8q_A Chromosomal replication 94.4 0.041 1.4E-06 51.2 5.2 47 19-65 26-74 (324)
163 4edh_A DTMP kinase, thymidylat 94.4 0.053 1.8E-06 47.8 5.6 35 29-63 7-41 (213)
164 2g0t_A Conserved hypothetical 94.3 0.23 7.9E-06 47.1 10.3 39 27-65 169-207 (350)
165 1d2e_A Elongation factor TU (E 94.3 0.32 1.1E-05 46.8 11.6 39 225-263 91-129 (397)
166 1g8f_A Sulfate adenylyltransfe 94.3 0.036 1.2E-06 55.5 4.9 38 29-66 396-435 (511)
167 1knq_A Gluconate kinase; ALFA/ 94.3 0.051 1.7E-06 45.6 5.1 34 28-66 8-41 (175)
168 3pqc_A Probable GTP-binding pr 94.3 1.8 6.2E-05 35.8 15.1 38 225-263 106-143 (195)
169 3vaa_A Shikimate kinase, SK; s 94.3 0.024 8.3E-07 48.9 3.1 33 28-65 25-57 (199)
170 1qf9_A UMP/CMP kinase, protein 94.2 0.034 1.2E-06 47.0 4.0 34 27-65 5-38 (194)
171 1nlf_A Regulatory protein REPA 94.2 0.05 1.7E-06 49.6 5.4 56 12-67 13-79 (279)
172 1e6c_A Shikimate kinase; phosp 94.1 0.028 9.6E-07 46.9 3.1 33 28-65 2-34 (173)
173 3bs4_A Uncharacterized protein 94.1 0.076 2.6E-06 48.4 6.2 52 16-67 7-60 (260)
174 2xex_A Elongation factor G; GT 94.1 0.2 7E-06 51.9 10.2 38 225-263 100-137 (693)
175 3t15_A Ribulose bisphosphate c 94.1 0.036 1.2E-06 51.2 4.0 36 26-64 34-69 (293)
176 2c78_A Elongation factor TU-A; 94.0 0.25 8.6E-06 47.6 10.2 39 225-263 100-138 (405)
177 2v54_A DTMP kinase, thymidylat 94.0 0.034 1.2E-06 47.7 3.6 34 29-64 5-38 (204)
178 1sq5_A Pantothenate kinase; P- 94.0 0.062 2.1E-06 50.0 5.5 42 26-67 78-121 (308)
179 1qvr_A CLPB protein; coiled co 94.0 0.082 2.8E-06 56.2 7.2 38 29-66 589-626 (854)
180 1ega_A Protein (GTP-binding pr 94.0 1.5 5.1E-05 40.3 15.0 80 225-318 90-169 (301)
181 2f1r_A Molybdopterin-guanine d 93.9 0.043 1.5E-06 46.6 4.0 39 29-67 3-41 (171)
182 3crm_A TRNA delta(2)-isopenten 93.9 0.041 1.4E-06 51.8 4.2 35 27-66 4-38 (323)
183 1y63_A LMAJ004144AAA protein; 93.9 0.04 1.4E-06 46.9 3.9 34 28-65 10-43 (184)
184 3e1s_A Exodeoxyribonuclease V, 93.9 0.055 1.9E-06 55.0 5.4 37 28-64 204-240 (574)
185 3nva_A CTP synthase; rossman f 93.9 0.12 4.2E-06 51.4 7.6 40 28-67 4-44 (535)
186 1dar_A EF-G, elongation factor 93.9 0.22 7.5E-06 51.7 9.9 38 225-263 102-139 (691)
187 2j9r_A Thymidine kinase; TK1, 93.8 0.1 3.5E-06 46.1 6.3 36 28-63 28-63 (214)
188 2bjv_A PSP operon transcriptio 93.8 0.036 1.2E-06 50.0 3.4 54 11-66 14-67 (265)
189 3hjn_A DTMP kinase, thymidylat 93.8 0.084 2.9E-06 45.8 5.6 35 30-64 2-36 (197)
190 1via_A Shikimate kinase; struc 93.8 0.034 1.2E-06 46.7 3.1 33 28-65 4-36 (175)
191 1zp6_A Hypothetical protein AT 93.7 0.046 1.6E-06 46.4 3.9 35 28-65 9-43 (191)
192 2if2_A Dephospho-COA kinase; a 93.7 0.027 9.1E-07 48.6 2.4 31 29-65 2-32 (204)
193 2vhj_A Ntpase P4, P4; non- hyd 93.7 0.026 8.8E-07 53.2 2.4 33 29-64 124-156 (331)
194 1d2n_A N-ethylmaleimide-sensit 93.7 0.087 3E-06 47.6 5.8 36 25-63 61-96 (272)
195 2grj_A Dephospho-COA kinase; T 93.6 0.054 1.8E-06 46.9 4.1 34 27-65 11-44 (192)
196 2bwj_A Adenylate kinase 5; pho 93.6 0.027 9.3E-07 48.1 2.2 33 28-65 12-44 (199)
197 2cdn_A Adenylate kinase; phosp 93.6 0.052 1.8E-06 46.7 4.0 33 28-65 20-52 (201)
198 1r6b_X CLPA protein; AAA+, N-t 93.6 0.13 4.3E-06 53.9 7.7 34 29-65 489-522 (758)
199 1zuh_A Shikimate kinase; alpha 93.6 0.047 1.6E-06 45.5 3.6 34 27-65 6-39 (168)
200 3iij_A Coilin-interacting nucl 93.5 0.043 1.5E-06 46.3 3.3 33 28-65 11-43 (180)
201 3syl_A Protein CBBX; photosynt 93.5 0.078 2.7E-06 48.7 5.3 38 27-64 66-107 (309)
202 1tev_A UMP-CMP kinase; ploop, 93.4 0.061 2.1E-06 45.5 4.1 33 28-65 3-35 (196)
203 1ukz_A Uridylate kinase; trans 93.4 0.055 1.9E-06 46.5 3.8 35 26-65 13-47 (203)
204 2z4s_A Chromosomal replication 93.3 0.069 2.4E-06 52.3 4.8 38 28-65 130-169 (440)
205 4eaq_A DTMP kinase, thymidylat 93.3 0.11 3.7E-06 46.2 5.7 35 28-63 26-60 (229)
206 2j69_A Bacterial dynamin-like 93.3 0.24 8.2E-06 51.4 9.1 34 27-67 69-102 (695)
207 3lv8_A DTMP kinase, thymidylat 93.3 0.089 3.1E-06 47.2 5.1 39 29-67 28-66 (236)
208 1aky_A Adenylate kinase; ATP:A 93.2 0.06 2.1E-06 47.1 3.8 33 28-65 4-36 (220)
209 2iyv_A Shikimate kinase, SK; t 93.1 0.046 1.6E-06 46.2 2.9 31 30-65 4-34 (184)
210 2c95_A Adenylate kinase 1; tra 93.1 0.057 1.9E-06 45.9 3.3 33 28-65 9-41 (196)
211 2qt1_A Nicotinamide riboside k 93.0 0.048 1.7E-06 47.1 2.9 36 27-66 20-55 (207)
212 3exa_A TRNA delta(2)-isopenten 92.9 0.093 3.2E-06 49.2 4.7 34 28-66 3-36 (322)
213 3tlx_A Adenylate kinase 2; str 92.9 0.081 2.8E-06 47.3 4.2 34 27-65 28-61 (243)
214 1uf9_A TT1252 protein; P-loop, 92.9 0.08 2.7E-06 45.2 4.0 33 27-65 7-39 (203)
215 4b3f_X DNA-binding protein smu 92.8 0.11 3.7E-06 53.5 5.6 37 29-65 206-242 (646)
216 3v9p_A DTMP kinase, thymidylat 92.8 0.08 2.7E-06 47.2 4.0 35 29-63 26-64 (227)
217 3be4_A Adenylate kinase; malar 92.8 0.048 1.6E-06 47.7 2.6 32 29-65 6-37 (217)
218 3cm0_A Adenylate kinase; ATP-b 92.8 0.094 3.2E-06 44.2 4.3 32 29-65 5-36 (186)
219 3a8t_A Adenylate isopentenyltr 92.8 0.081 2.8E-06 50.0 4.2 34 29-67 41-74 (339)
220 2vli_A Antibiotic resistance p 92.7 0.043 1.5E-06 46.2 2.0 30 28-60 5-34 (183)
221 1zd8_A GTP:AMP phosphotransfer 92.6 0.05 1.7E-06 47.9 2.5 33 28-65 7-39 (227)
222 1ltq_A Polynucleotide kinase; 92.6 0.075 2.6E-06 48.8 3.7 34 28-65 2-35 (301)
223 4tmk_A Protein (thymidylate ki 92.6 0.13 4.4E-06 45.3 5.0 39 29-68 4-43 (213)
224 3h4m_A Proteasome-activating n 92.6 0.11 3.6E-06 47.2 4.6 34 28-64 51-84 (285)
225 1njg_A DNA polymerase III subu 92.6 0.11 3.7E-06 44.9 4.5 28 28-55 45-72 (250)
226 1kag_A SKI, shikimate kinase I 92.5 0.061 2.1E-06 44.8 2.7 32 29-65 5-36 (173)
227 1tf7_A KAIC; homohexamer, hexa 92.2 0.15 5.2E-06 51.0 5.7 50 17-66 268-319 (525)
228 3ake_A Cytidylate kinase; CMP 92.2 0.063 2.1E-06 46.1 2.5 31 30-65 4-34 (208)
229 1jjv_A Dephospho-COA kinase; P 92.2 0.12 4.2E-06 44.5 4.4 32 28-65 2-33 (206)
230 1sxj_A Activator 1 95 kDa subu 92.2 0.074 2.5E-06 53.2 3.3 36 28-66 77-112 (516)
231 1z6t_A APAF-1, apoptotic prote 92.2 0.089 3.1E-06 53.1 4.0 42 26-67 145-190 (591)
232 3asz_A Uridine kinase; cytidin 92.2 0.13 4.4E-06 44.4 4.5 37 28-67 6-42 (211)
233 2ga8_A Hypothetical 39.9 kDa p 92.2 0.14 4.9E-06 48.7 5.1 45 9-53 5-49 (359)
234 2pt5_A Shikimate kinase, SK; a 92.1 0.11 3.7E-06 43.1 3.8 31 30-65 2-32 (168)
235 1zak_A Adenylate kinase; ATP:A 92.1 0.072 2.5E-06 46.6 2.8 25 28-52 5-29 (222)
236 1hqc_A RUVB; extended AAA-ATPa 92.1 0.16 5.4E-06 46.9 5.2 44 29-75 39-82 (324)
237 3do6_A Formate--tetrahydrofola 92.1 0.24 8.3E-06 48.5 6.6 51 26-78 42-95 (543)
238 2a5y_B CED-4; apoptosis; HET: 92.1 0.11 3.7E-06 52.3 4.3 24 27-50 151-174 (549)
239 3tr5_A RF-3, peptide chain rel 92.0 0.098 3.4E-06 52.6 4.0 38 225-263 107-144 (528)
240 4hlc_A DTMP kinase, thymidylat 91.9 0.17 5.8E-06 44.2 5.0 34 29-63 3-36 (205)
241 2f6r_A COA synthase, bifunctio 91.9 0.1 3.5E-06 47.8 3.7 33 27-65 74-106 (281)
242 1ofh_A ATP-dependent HSL prote 91.9 0.17 5.8E-06 46.1 5.1 34 29-65 51-84 (310)
243 2qz4_A Paraplegin; AAA+, SPG7, 91.9 0.21 7.2E-06 44.4 5.7 35 28-65 39-73 (262)
244 2fna_A Conserved hypothetical 91.8 0.11 3.8E-06 48.1 3.9 35 29-66 31-65 (357)
245 1w36_D RECD, exodeoxyribonucle 91.8 0.15 5.1E-06 52.1 5.1 36 28-63 164-203 (608)
246 1tue_A Replication protein E1; 91.8 0.11 3.9E-06 45.6 3.6 36 17-52 46-82 (212)
247 2jaq_A Deoxyguanosine kinase; 91.7 0.13 4.4E-06 43.8 3.8 24 30-53 2-25 (205)
248 1ak2_A Adenylate kinase isoenz 91.7 0.13 4.4E-06 45.5 3.9 32 29-65 17-48 (233)
249 1e4v_A Adenylate kinase; trans 91.5 0.11 3.8E-06 45.1 3.3 30 31-65 3-32 (214)
250 3eph_A TRNA isopentenyltransfe 91.5 0.19 6.6E-06 48.6 5.2 34 28-66 2-35 (409)
251 3fb4_A Adenylate kinase; psych 91.5 0.14 4.7E-06 44.4 3.9 30 31-65 3-32 (216)
252 4ag6_A VIRB4 ATPase, type IV s 91.4 0.22 7.5E-06 47.6 5.6 35 31-65 38-72 (392)
253 4dcu_A GTP-binding protein ENG 91.4 0.31 1.1E-05 47.7 6.8 21 29-49 24-44 (456)
254 3pxg_A Negative regulator of g 91.3 0.14 4.9E-06 50.5 4.2 27 28-54 201-227 (468)
255 3u61_B DNA polymerase accessor 91.3 0.15 5.2E-06 47.2 4.2 46 18-66 37-83 (324)
256 2xb4_A Adenylate kinase; ATP-b 91.3 0.17 5.9E-06 44.4 4.3 31 30-65 2-32 (223)
257 3umf_A Adenylate kinase; rossm 91.2 0.18 6E-06 44.6 4.3 26 27-52 28-53 (217)
258 2orv_A Thymidine kinase; TP4A 91.2 0.3 1E-05 43.6 5.8 36 28-63 19-54 (234)
259 1bif_A 6-phosphofructo-2-kinas 91.2 0.21 7.1E-06 49.2 5.3 40 26-65 37-76 (469)
260 2qor_A Guanylate kinase; phosp 91.2 0.093 3.2E-06 45.3 2.4 24 29-52 13-36 (204)
261 1vt4_I APAF-1 related killer D 91.2 0.23 7.7E-06 53.9 5.8 44 27-70 149-195 (1221)
262 1ojl_A Transcriptional regulat 91.1 0.09 3.1E-06 48.8 2.4 55 10-66 9-63 (304)
263 2jeo_A Uridine-cytidine kinase 91.0 0.24 8.1E-06 44.1 5.1 38 28-65 25-67 (245)
264 1vht_A Dephospho-COA kinase; s 90.7 0.23 7.9E-06 43.1 4.6 32 28-65 4-35 (218)
265 1sxj_B Activator 1 37 kDa subu 90.6 0.1 3.4E-06 47.9 2.2 46 19-64 33-80 (323)
266 1c9k_A COBU, adenosylcobinamid 90.5 0.13 4.6E-06 44.1 2.8 32 31-66 2-33 (180)
267 3dl0_A Adenylate kinase; phosp 90.4 0.15 5.2E-06 44.2 3.2 30 31-65 3-32 (216)
268 1iqp_A RFCS; clamp loader, ext 90.4 0.084 2.9E-06 48.5 1.5 46 19-64 37-84 (327)
269 1tf7_A KAIC; homohexamer, hexa 90.3 0.95 3.3E-05 45.1 9.3 50 17-66 26-78 (525)
270 2bdt_A BH3686; alpha-beta prot 90.2 0.21 7.2E-06 42.3 3.8 33 29-65 3-35 (189)
271 3ch4_B Pmkase, phosphomevalona 90.2 0.18 6.1E-06 44.1 3.3 27 26-52 9-35 (202)
272 3tau_A Guanylate kinase, GMP k 90.2 0.18 6.3E-06 43.7 3.4 25 28-52 8-32 (208)
273 3aez_A Pantothenate kinase; tr 90.1 0.41 1.4E-05 44.6 6.0 42 26-67 88-131 (312)
274 1sxj_C Activator 1 40 kDa subu 90.1 0.11 3.9E-06 48.6 2.2 49 18-66 36-84 (340)
275 1um8_A ATP-dependent CLP prote 90.0 0.26 8.9E-06 46.8 4.6 34 29-65 73-106 (376)
276 1lv7_A FTSH; alpha/beta domain 89.9 0.35 1.2E-05 43.1 5.2 31 30-63 47-77 (257)
277 3zvl_A Bifunctional polynucleo 89.9 0.11 3.9E-06 50.4 2.0 36 26-66 256-291 (416)
278 3pxi_A Negative regulator of g 89.8 0.42 1.4E-05 50.0 6.4 36 30-65 523-558 (758)
279 2r44_A Uncharacterized protein 89.7 0.34 1.2E-05 44.9 5.2 44 31-77 49-92 (331)
280 2elf_A Protein translation elo 89.7 7.2 0.00025 36.9 14.5 38 225-263 85-123 (370)
281 1kgd_A CASK, peripheral plasma 89.6 0.2 6.8E-06 42.3 3.1 24 29-52 6-29 (180)
282 2gk6_A Regulator of nonsense t 89.6 0.34 1.2E-05 49.5 5.4 37 29-65 196-233 (624)
283 2qen_A Walker-type ATPase; unk 89.5 0.27 9.3E-06 45.4 4.2 33 29-66 32-64 (350)
284 1sxj_D Activator 1 41 kDa subu 89.5 0.27 9.1E-06 45.8 4.2 47 18-64 48-97 (353)
285 3jvv_A Twitching mobility prot 89.5 0.45 1.5E-05 45.2 5.8 45 18-63 114-159 (356)
286 3co5_A Putative two-component 89.4 0.092 3.2E-06 42.8 0.8 40 10-51 11-50 (143)
287 2qmh_A HPR kinase/phosphorylas 89.4 0.34 1.2E-05 42.3 4.4 31 29-65 35-65 (205)
288 2eyu_A Twitching motility prot 89.3 0.58 2E-05 42.3 6.2 46 18-64 16-62 (261)
289 1cke_A CK, MSSA, protein (cyti 89.2 0.28 9.6E-06 42.6 3.9 32 29-65 6-37 (227)
290 2bbw_A Adenylate kinase 4, AK4 89.2 0.27 9.1E-06 43.7 3.8 25 28-52 27-51 (246)
291 2l8b_A Protein TRAI, DNA helic 89.1 4.5 0.00015 34.6 11.2 41 26-66 49-90 (189)
292 1qvr_A CLPB protein; coiled co 89.1 0.23 7.9E-06 52.8 3.9 40 26-65 189-235 (854)
293 1zun_B Sulfate adenylate trans 89.1 5.5 0.00019 38.4 13.5 39 225-263 129-167 (434)
294 3cr8_A Sulfate adenylyltranfer 89.1 0.25 8.4E-06 49.9 3.8 38 29-66 370-408 (552)
295 3uk6_A RUVB-like 2; hexameric 89.0 0.27 9.3E-06 46.1 3.9 34 29-63 71-104 (368)
296 3d8b_A Fidgetin-like protein 1 88.8 0.36 1.2E-05 45.7 4.6 34 28-64 117-150 (357)
297 3pfi_A Holliday junction ATP-d 88.7 0.39 1.4E-05 44.5 4.8 35 29-66 56-90 (338)
298 3sfz_A APAF-1, apoptotic pepti 88.7 0.35 1.2E-05 52.7 5.0 41 26-66 145-189 (1249)
299 1ex7_A Guanylate kinase; subst 88.6 0.19 6.7E-06 43.2 2.4 22 30-51 3-24 (186)
300 2j41_A Guanylate kinase; GMP, 88.3 0.31 1.1E-05 41.6 3.4 24 29-52 7-30 (207)
301 1nij_A Hypothetical protein YJ 88.3 0.3 1E-05 45.5 3.6 39 27-67 3-41 (318)
302 2chq_A Replication factor C sm 88.2 0.29 1E-05 44.6 3.5 47 19-65 29-77 (319)
303 3hws_A ATP-dependent CLP prote 88.2 0.37 1.3E-05 45.5 4.3 34 29-65 52-85 (363)
304 3ney_A 55 kDa erythrocyte memb 88.2 0.33 1.1E-05 42.2 3.5 25 28-52 19-43 (197)
305 2ewv_A Twitching motility prot 88.2 0.66 2.3E-05 44.3 6.0 45 19-64 128-173 (372)
306 3cf0_A Transitional endoplasmi 88.1 0.42 1.4E-05 43.9 4.5 33 28-63 49-81 (301)
307 2wjy_A Regulator of nonsense t 88.1 0.47 1.6E-05 50.1 5.3 37 29-65 372-409 (800)
308 1xwi_A SKD1 protein; VPS4B, AA 88.0 0.44 1.5E-05 44.4 4.6 35 29-65 46-80 (322)
309 3b9p_A CG5977-PA, isoform A; A 88.0 0.45 1.5E-05 43.3 4.6 34 28-64 54-87 (297)
310 1jr3_A DNA polymerase III subu 87.9 0.39 1.3E-05 45.0 4.2 26 28-53 38-63 (373)
311 3sr0_A Adenylate kinase; phosp 87.9 0.38 1.3E-05 41.9 3.9 22 31-52 3-24 (206)
312 3tqf_A HPR(Ser) kinase; transf 87.8 0.35 1.2E-05 41.3 3.4 25 30-58 18-42 (181)
313 4b4t_K 26S protease regulatory 87.8 0.64 2.2E-05 45.3 5.7 37 25-64 203-239 (428)
314 1p9r_A General secretion pathw 87.7 0.63 2.1E-05 45.2 5.6 46 19-65 159-204 (418)
315 2ged_A SR-beta, signal recogni 87.7 0.49 1.7E-05 39.6 4.3 20 30-49 50-69 (193)
316 3r20_A Cytidylate kinase; stru 87.4 0.39 1.3E-05 42.8 3.7 33 28-65 9-41 (233)
317 3eie_A Vacuolar protein sortin 87.3 0.57 2E-05 43.4 4.9 34 28-64 51-84 (322)
318 2c9o_A RUVB-like 1; hexameric 87.1 0.47 1.6E-05 46.5 4.4 35 29-64 64-98 (456)
319 3pvs_A Replication-associated 87.0 0.38 1.3E-05 47.2 3.6 36 17-52 39-74 (447)
320 3tr0_A Guanylate kinase, GMP k 87.0 0.39 1.3E-05 40.9 3.3 24 29-52 8-31 (205)
321 2qp9_X Vacuolar protein sortin 86.8 0.54 1.8E-05 44.4 4.5 31 31-64 87-117 (355)
322 3a00_A Guanylate kinase, GMP k 86.7 0.31 1.1E-05 41.3 2.5 25 29-53 2-26 (186)
323 1w4r_A Thymidine kinase; type 86.7 0.93 3.2E-05 39.3 5.5 38 27-64 19-56 (195)
324 3e2i_A Thymidine kinase; Zn-bi 86.5 0.89 3E-05 40.1 5.3 39 29-67 29-69 (219)
325 1e9r_A Conjugal transfer prote 86.3 0.61 2.1E-05 45.1 4.7 39 31-71 56-94 (437)
326 1in4_A RUVB, holliday junction 86.2 0.44 1.5E-05 44.6 3.4 24 29-52 52-75 (334)
327 2dy1_A Elongation factor G; tr 86.0 2 6.7E-05 44.3 8.5 37 226-263 100-136 (665)
328 1q3t_A Cytidylate kinase; nucl 85.7 0.59 2E-05 41.1 3.9 33 28-65 16-48 (236)
329 1sxj_E Activator 1 40 kDa subu 85.7 0.42 1.4E-05 44.5 3.0 23 31-53 39-61 (354)
330 2xzl_A ATP-dependent helicase 85.6 0.72 2.5E-05 48.7 5.1 37 29-65 376-413 (802)
331 2gno_A DNA polymerase III, gam 85.6 1.3 4.5E-05 40.9 6.4 49 17-65 7-58 (305)
332 2ocp_A DGK, deoxyguanosine kin 85.5 0.44 1.5E-05 42.1 2.9 25 29-53 3-27 (241)
333 3lfu_A DNA helicase II; SF1 he 85.5 1.2 4E-05 45.3 6.5 54 11-65 6-63 (647)
334 3pxi_A Negative regulator of g 85.3 0.53 1.8E-05 49.2 3.9 26 29-54 202-227 (758)
335 4e22_A Cytidylate kinase; P-lo 84.7 0.58 2E-05 41.9 3.3 24 29-52 28-51 (252)
336 2i3b_A HCR-ntpase, human cance 84.5 0.74 2.5E-05 39.5 3.8 27 30-56 3-29 (189)
337 4b4t_L 26S protease subunit RP 84.4 0.83 2.8E-05 44.6 4.5 37 26-65 213-249 (437)
338 2r62_A Cell division protease 84.3 0.37 1.3E-05 43.1 1.9 22 31-52 47-68 (268)
339 3nwj_A ATSK2; P loop, shikimat 84.2 0.57 1.9E-05 42.2 3.1 32 29-65 49-80 (250)
340 1s96_A Guanylate kinase, GMP k 84.1 0.64 2.2E-05 40.8 3.3 24 29-52 17-40 (219)
341 3avx_A Elongation factor TS, e 84.1 4.9 0.00017 44.1 10.6 39 225-263 384-422 (1289)
342 1ye8_A Protein THEP1, hypothet 84.0 0.81 2.8E-05 38.7 3.8 23 31-53 3-25 (178)
343 4b4t_M 26S protease regulatory 84.0 0.88 3E-05 44.4 4.5 36 26-64 213-248 (434)
344 3hdt_A Putative kinase; struct 84.0 0.79 2.7E-05 40.5 3.9 33 28-65 14-46 (223)
345 1r6b_X CLPA protein; AAA+, N-t 83.8 1.1 3.7E-05 46.8 5.4 30 25-54 204-233 (758)
346 4b4t_J 26S protease regulatory 83.7 0.77 2.6E-05 44.4 3.9 36 26-64 180-215 (405)
347 1ixz_A ATP-dependent metallopr 83.6 0.62 2.1E-05 41.3 3.1 22 31-52 52-73 (254)
348 3czq_A Putative polyphosphate 83.4 0.38 1.3E-05 44.7 1.5 60 6-65 60-123 (304)
349 1lvg_A Guanylate kinase, GMP k 83.1 0.69 2.4E-05 39.7 3.1 25 29-53 5-29 (198)
350 2zan_A Vacuolar protein sortin 83.0 0.91 3.1E-05 44.3 4.2 34 29-64 168-201 (444)
351 3kta_A Chromosome segregation 82.9 0.66 2.3E-05 38.7 2.8 24 30-53 28-51 (182)
352 1dek_A Deoxynucleoside monopho 82.7 0.85 2.9E-05 40.8 3.6 28 29-59 2-29 (241)
353 2h92_A Cytidylate kinase; ross 82.6 0.62 2.1E-05 40.2 2.6 32 29-65 4-35 (219)
354 3hu3_A Transitional endoplasmi 82.6 1.1 3.7E-05 44.5 4.6 34 28-64 238-271 (489)
355 1zj6_A ADP-ribosylation factor 82.5 0.9 3.1E-05 37.9 3.5 38 225-263 85-127 (187)
356 2atv_A RERG, RAS-like estrogen 82.3 1 3.4E-05 37.9 3.8 29 21-50 22-50 (196)
357 2npi_A Protein CLP1; CLP1-PCF1 82.3 0.5 1.7E-05 46.6 2.0 49 26-75 137-186 (460)
358 3rsc_A CALG2; TDP, enediyne, s 82.3 5.2 0.00018 37.6 9.2 39 25-64 18-56 (415)
359 1svi_A GTP-binding protein YSX 82.2 0.89 3E-05 38.0 3.4 37 225-263 107-144 (195)
360 3vfd_A Spastin; ATPase, microt 82.1 1.2 4E-05 42.4 4.5 33 29-64 149-181 (389)
361 2vp4_A Deoxynucleoside kinase; 82.0 0.94 3.2E-05 39.7 3.6 33 29-65 21-53 (230)
362 1p5z_B DCK, deoxycytidine kina 82.0 0.34 1.2E-05 43.5 0.7 26 27-52 23-48 (263)
363 4b4t_H 26S protease regulatory 81.9 1.1 3.6E-05 44.2 4.2 36 26-64 241-276 (467)
364 1a5t_A Delta prime, HOLB; zinc 81.9 1.2 4.1E-05 41.5 4.4 36 19-54 14-50 (334)
365 4ehx_A Tetraacyldisaccharide 4 81.8 0.91 3.1E-05 42.3 3.5 29 36-66 46-74 (315)
366 1kk1_A EIF2gamma; initiation o 81.7 36 0.0012 32.2 15.1 39 225-263 108-147 (410)
367 3fdi_A Uncharacterized protein 81.7 0.72 2.5E-05 39.9 2.6 30 29-63 7-36 (201)
368 1g41_A Heat shock protein HSLU 81.5 1.3 4.5E-05 43.3 4.6 31 31-64 53-83 (444)
369 3tmk_A Thymidylate kinase; pho 81.3 0.89 3E-05 39.9 3.1 32 29-63 6-37 (216)
370 1iy2_A ATP-dependent metallopr 81.1 0.87 3E-05 41.1 3.1 22 31-52 76-97 (278)
371 3oti_A CALG3; calicheamicin, T 81.0 8.9 0.0003 35.9 10.3 39 25-64 18-56 (398)
372 4gp7_A Metallophosphoesterase; 80.9 0.89 3.1E-05 37.9 2.9 19 29-47 10-28 (171)
373 3m6a_A ATP-dependent protease 80.9 1.9 6.6E-05 43.2 5.8 35 28-65 108-142 (543)
374 3orf_A Dihydropteridine reduct 80.7 1.3 4.3E-05 39.3 4.0 37 26-67 21-57 (251)
375 2b6h_A ADP-ribosylation factor 80.5 1.2 4E-05 37.6 3.5 30 18-48 20-49 (192)
376 2x8a_A Nuclear valosin-contain 80.4 0.94 3.2E-05 41.1 3.1 31 31-64 47-77 (274)
377 4b4t_I 26S protease regulatory 80.3 1.4 4.7E-05 42.9 4.3 36 26-64 214-249 (437)
378 1u0j_A DNA replication protein 80.2 1.5 5.1E-05 39.9 4.2 34 19-52 93-128 (267)
379 1ksh_A ARF-like protein 2; sma 80.2 1.3 4.3E-05 36.7 3.6 38 225-263 87-129 (186)
380 3lnc_A Guanylate kinase, GMP k 80.1 0.8 2.7E-05 40.1 2.4 24 29-52 28-52 (231)
381 4amg_A Snogd; transferase, pol 79.8 4.2 0.00014 37.9 7.6 39 26-65 21-59 (400)
382 1znw_A Guanylate kinase, GMP k 79.8 1.2 4E-05 38.3 3.3 24 29-52 21-44 (207)
383 1f2t_A RAD50 ABC-ATPase; DNA d 79.6 1.5 5.2E-05 35.8 3.8 25 29-53 24-48 (149)
384 3p26_A Elongation factor 1 alp 79.4 16 0.00054 35.7 11.8 39 225-263 136-181 (483)
385 3un1_A Probable oxidoreductase 79.3 1.4 4.8E-05 39.4 3.8 43 20-67 21-63 (260)
386 2dyk_A GTP-binding protein; GT 79.2 1.5 5E-05 35.1 3.6 38 225-263 81-118 (161)
387 2lkc_A Translation initiation 78.8 1.6 5.5E-05 35.6 3.8 38 225-263 80-117 (178)
388 2ce2_X GTPase HRAS; signaling 78.8 1.1 3.6E-05 35.9 2.6 37 226-263 77-118 (166)
389 3con_A GTPase NRAS; structural 78.7 1.3 4.3E-05 36.9 3.1 20 31-50 24-43 (190)
390 3b6e_A Interferon-induced heli 78.6 1.5 5.1E-05 37.2 3.6 33 31-63 51-89 (216)
391 4i1u_A Dephospho-COA kinase; s 78.6 1.5 5.3E-05 38.3 3.7 31 29-65 10-40 (210)
392 1fzq_A ADP-ribosylation factor 78.5 1.5 5.2E-05 36.4 3.6 38 225-263 85-127 (181)
393 1f0k_A MURG, UDP-N-acetylgluco 78.5 12 0.00042 34.1 10.2 38 28-66 7-44 (364)
394 1svm_A Large T antigen; AAA+ f 78.4 1.5 5.2E-05 41.9 3.9 26 27-52 168-193 (377)
395 1moz_A ARL1, ADP-ribosylation 78.3 1.1 3.9E-05 36.8 2.7 39 224-263 86-129 (183)
396 2fz4_A DNA repair protein RAD2 78.3 1.9 6.5E-05 38.1 4.3 30 31-63 111-140 (237)
397 1knx_A Probable HPR(Ser) kinas 78.1 1.1 3.9E-05 41.6 2.8 25 30-58 149-173 (312)
398 3qks_A DNA double-strand break 78.0 1.7 5.9E-05 37.4 3.8 26 29-54 24-49 (203)
399 3clv_A RAB5 protein, putative; 77.9 1.7 5.8E-05 36.1 3.7 38 225-263 118-157 (208)
400 3nrs_A Dihydrofolate:folylpoly 77.8 3 0.0001 40.4 5.9 36 27-64 51-86 (437)
401 1g8p_A Magnesium-chelatase 38 77.7 0.78 2.7E-05 42.5 1.6 23 31-53 48-70 (350)
402 1z6g_A Guanylate kinase; struc 77.6 1.2 4.2E-05 38.7 2.8 24 29-52 24-47 (218)
403 1of1_A Thymidine kinase; trans 77.5 1.7 5.8E-05 41.5 3.9 35 29-66 50-84 (376)
404 2wji_A Ferrous iron transport 77.5 1.9 6.5E-05 35.1 3.8 36 225-263 83-118 (165)
405 1z2a_A RAS-related protein RAB 77.3 1.5 5.1E-05 35.3 3.1 38 225-263 79-119 (168)
406 1e2k_A Thymidine kinase; trans 77.3 1.5 5.1E-05 41.2 3.4 35 29-66 5-39 (331)
407 2yv5_A YJEQ protein; hydrolase 77.1 1.5 5E-05 40.5 3.3 31 19-49 156-186 (302)
408 3bwd_D RAC-like GTP-binding pr 77.0 1.9 6.4E-05 35.3 3.7 38 225-263 81-122 (182)
409 1htw_A HI0065; nucleotide-bind 76.9 1.5 5.3E-05 36.3 3.1 25 28-52 33-57 (158)
410 3oes_A GTPase rhebl1; small GT 76.9 1.4 4.9E-05 37.1 3.0 38 225-263 97-139 (201)
411 3dou_A Ribosomal RNA large sub 76.8 32 0.0011 28.8 12.3 33 26-67 25-58 (191)
412 3gem_A Short chain dehydrogena 76.4 1.6 5.5E-05 39.0 3.3 38 25-67 25-62 (260)
413 1vl8_A Gluconate 5-dehydrogena 76.4 1.5 5.2E-05 39.2 3.2 36 26-66 20-55 (267)
414 1rif_A DAR protein, DNA helica 76.1 2 7E-05 38.6 3.9 32 32-63 132-164 (282)
415 3t5g_A GTP-binding protein RHE 75.4 1.3 4.4E-05 36.5 2.2 19 31-49 9-27 (181)
416 3grp_A 3-oxoacyl-(acyl carrier 75.3 1.8 6.1E-05 38.8 3.3 42 20-66 20-61 (266)
417 3l6e_A Oxidoreductase, short-c 75.1 2.1 7.3E-05 37.5 3.7 35 27-66 3-37 (235)
418 3cf2_A TER ATPase, transitiona 75.1 1.7 5.8E-05 45.8 3.4 35 27-64 237-271 (806)
419 3vtz_A Glucose 1-dehydrogenase 75.0 1.9 6.5E-05 38.7 3.4 38 25-67 12-49 (269)
420 2qu8_A Putative nucleolar GTP- 75.0 2.2 7.5E-05 36.9 3.7 38 225-263 110-152 (228)
421 2wjg_A FEOB, ferrous iron tran 74.8 2.4 8.2E-05 35.0 3.8 35 226-263 88-122 (188)
422 2ce7_A Cell division protein F 74.8 3.1 0.00011 41.0 5.1 33 30-65 51-83 (476)
423 3ged_A Short-chain dehydrogena 74.6 2.2 7.6E-05 38.1 3.7 34 28-66 3-36 (247)
424 4egf_A L-xylulose reductase; s 74.5 1.7 5.7E-05 38.9 2.9 40 22-66 15-54 (266)
425 2zej_A Dardarin, leucine-rich 74.4 1.6 5.3E-05 36.4 2.5 19 31-49 5-23 (184)
426 1ny5_A Transcriptional regulat 74.3 3.2 0.00011 39.6 5.0 47 31-77 163-212 (387)
427 4gzl_A RAS-related C3 botulinu 74.3 1.9 6.5E-05 36.6 3.1 38 225-263 103-144 (204)
428 3p19_A BFPVVD8, putative blue 74.2 2.7 9.3E-05 37.6 4.2 35 27-66 16-50 (266)
429 2p5s_A RAS and EF-hand domain 74.2 2.3 7.8E-05 35.8 3.6 38 225-263 102-143 (199)
430 3r1i_A Short-chain type dehydr 74.1 2.9 9.9E-05 37.6 4.4 41 22-67 27-67 (276)
431 3cph_A RAS-related protein SEC 74.0 2.3 8E-05 35.9 3.6 38 225-263 94-135 (213)
432 2iwr_A Centaurin gamma 1; ANK 74.0 1.8 6.3E-05 35.4 2.8 20 31-50 10-29 (178)
433 4e6p_A Probable sorbitol dehyd 74.0 2.5 8.4E-05 37.5 3.9 36 26-66 7-42 (259)
434 1u8z_A RAS-related protein RAL 73.9 2.1 7.1E-05 34.2 3.1 19 31-49 7-25 (168)
435 3h7a_A Short chain dehydrogena 73.7 2.6 9E-05 37.3 4.0 37 26-67 6-42 (252)
436 3sx2_A Putative 3-ketoacyl-(ac 73.6 2.5 8.5E-05 37.9 3.8 36 26-66 12-47 (278)
437 2erx_A GTP-binding protein DI- 73.6 2.1 7.2E-05 34.4 3.1 37 226-263 77-119 (172)
438 1w78_A FOLC bifunctional prote 73.5 3 0.0001 40.2 4.6 35 28-64 49-83 (422)
439 3gvc_A Oxidoreductase, probabl 73.5 2.2 7.7E-05 38.5 3.5 36 26-66 28-63 (277)
440 1dhr_A Dihydropteridine reduct 73.4 2.7 9.1E-05 36.8 3.9 37 26-67 6-42 (241)
441 3op4_A 3-oxoacyl-[acyl-carrier 73.3 2 6.8E-05 38.0 3.1 36 26-66 8-43 (248)
442 1ooe_A Dihydropteridine reduct 73.3 2.5 8.6E-05 36.8 3.7 36 27-67 3-38 (236)
443 3i1j_A Oxidoreductase, short c 73.3 2.1 7.3E-05 37.4 3.3 36 26-66 13-48 (247)
444 3h1t_A Type I site-specific re 73.3 3.8 0.00013 41.1 5.5 35 28-63 199-242 (590)
445 3tzq_B Short-chain type dehydr 73.2 2.7 9.4E-05 37.6 4.0 37 26-67 10-46 (271)
446 3uxy_A Short-chain dehydrogena 73.2 1.8 6.2E-05 38.8 2.8 40 22-66 23-62 (266)
447 3tpc_A Short chain alcohol deh 73.1 3 0.0001 36.8 4.2 37 26-67 6-42 (257)
448 1e8c_A UDP-N-acetylmuramoylala 73.1 4.8 0.00016 39.7 6.1 35 28-64 108-142 (498)
449 3rwb_A TPLDH, pyridoxal 4-dehy 73.0 2.3 7.9E-05 37.5 3.4 36 26-66 5-40 (247)
450 1p6x_A Thymidine kinase; P-loo 73.0 2.2 7.5E-05 40.1 3.4 37 29-67 8-44 (334)
451 3f1l_A Uncharacterized oxidore 72.9 2.7 9.2E-05 37.1 3.8 36 26-66 11-46 (252)
452 2wsb_A Galactitol dehydrogenas 72.8 2.6 9E-05 36.9 3.7 36 26-66 10-45 (254)
453 3pk0_A Short-chain dehydrogena 72.7 2.2 7.6E-05 38.0 3.3 38 24-66 7-44 (262)
454 2fh5_B SR-beta, signal recogni 72.7 2.2 7.6E-05 36.2 3.1 20 31-50 10-29 (214)
455 3pxx_A Carveol dehydrogenase; 72.6 2.6 8.7E-05 37.8 3.7 36 26-66 9-44 (287)
456 3uf0_A Short-chain dehydrogena 72.5 2.4 8.3E-05 38.1 3.5 34 25-63 29-62 (273)
457 3guy_A Short-chain dehydrogena 72.5 2.5 8.7E-05 36.6 3.5 34 28-66 2-35 (230)
458 3mq7_A Bone marrow stromal ant 72.4 1.7 5.9E-05 33.9 2.0 31 333-363 72-102 (121)
459 2dtx_A Glucose 1-dehydrogenase 72.3 3.3 0.00011 37.0 4.3 37 27-68 8-44 (264)
460 1pui_A ENGB, probable GTP-bind 72.3 2 6.9E-05 36.3 2.8 71 242-322 127-197 (210)
461 3ak4_A NADH-dependent quinucli 72.3 2.8 9.4E-05 37.2 3.8 36 26-66 11-46 (263)
462 2dhr_A FTSH; AAA+ protein, hex 72.3 3.3 0.00011 41.1 4.6 32 31-65 67-98 (499)
463 3rih_A Short chain dehydrogena 72.3 2.2 7.5E-05 38.9 3.2 41 22-67 36-76 (293)
464 2ae2_A Protein (tropinone redu 72.3 2.9 9.8E-05 37.1 3.9 36 26-66 8-43 (260)
465 3k1j_A LON protease, ATP-depen 72.2 2.3 7.9E-05 43.1 3.6 39 29-67 61-99 (604)
466 1osn_A Thymidine kinase, VZV-T 72.1 1.2 4.3E-05 41.9 1.4 37 29-67 13-50 (341)
467 2fwm_X 2,3-dihydro-2,3-dihydro 72.0 3.2 0.00011 36.5 4.1 36 27-67 7-42 (250)
468 1ypw_A Transitional endoplasmi 72.0 2.5 8.5E-05 44.5 3.9 33 29-64 239-271 (806)
469 1wms_A RAB-9, RAB9, RAS-relate 71.9 2.6 8.8E-05 34.3 3.3 19 31-49 10-28 (177)
470 2d1y_A Hypothetical protein TT 71.9 3.1 0.00011 36.8 4.0 36 27-67 6-41 (256)
471 3v8b_A Putative dehydrogenase, 71.8 2.9 9.9E-05 37.8 3.9 40 22-66 23-62 (283)
472 4eso_A Putative oxidoreductase 71.8 3 0.0001 37.0 3.9 36 26-66 7-42 (255)
473 4imr_A 3-oxoacyl-(acyl-carrier 71.8 3.1 0.0001 37.5 4.0 41 23-68 29-69 (275)
474 3qiv_A Short-chain dehydrogena 71.8 2.8 9.7E-05 36.8 3.7 36 26-66 8-43 (253)
475 2nzj_A GTP-binding protein REM 71.7 2.5 8.4E-05 34.3 3.1 37 226-263 80-121 (175)
476 2ywe_A GTP-binding protein LEP 71.7 11 0.00036 38.3 8.3 38 225-263 98-135 (600)
477 3t7c_A Carveol dehydrogenase; 71.5 2.9 0.0001 38.0 3.8 37 26-67 27-63 (299)
478 3l77_A Short-chain alcohol deh 71.4 3.2 0.00011 36.0 3.9 35 27-66 2-36 (235)
479 3svt_A Short-chain type dehydr 71.4 2.9 9.8E-05 37.6 3.7 36 26-66 10-45 (281)
480 3lyl_A 3-oxoacyl-(acyl-carrier 71.3 2.5 8.6E-05 37.0 3.2 36 26-66 4-39 (247)
481 3ice_A Transcription terminati 71.3 4.1 0.00014 39.3 4.8 43 26-69 173-217 (422)
482 1z08_A RAS-related protein RAB 71.2 2.6 8.8E-05 33.9 3.1 38 225-263 80-121 (170)
483 3ctm_A Carbonyl reductase; alc 71.2 3.4 0.00011 36.9 4.1 37 26-67 33-69 (279)
484 3vqt_A RF-3, peptide chain rel 71.2 5 0.00017 40.3 5.7 38 225-263 125-162 (548)
485 1h65_A Chloroplast outer envel 71.2 3.3 0.00011 37.0 4.1 20 30-49 41-60 (270)
486 3ppi_A 3-hydroxyacyl-COA dehyd 71.1 2.9 9.9E-05 37.5 3.7 36 26-66 29-64 (281)
487 3nyw_A Putative oxidoreductase 71.1 2.6 8.9E-05 37.3 3.3 36 26-66 6-41 (250)
488 2ew8_A (S)-1-phenylethanol deh 70.9 3.1 0.00011 36.6 3.8 35 27-66 7-41 (249)
489 2ekp_A 2-deoxy-D-gluconate 3-d 70.9 3.1 0.0001 36.4 3.7 36 27-67 2-37 (239)
490 4fn4_A Short chain dehydrogena 70.8 3.1 0.00011 37.3 3.8 36 26-66 6-41 (254)
491 1f6b_A SAR1; gtpases, N-termin 70.8 3 0.0001 35.2 3.5 38 225-263 94-136 (198)
492 1kao_A RAP2A; GTP-binding prot 70.7 2.7 9.2E-05 33.5 3.1 20 31-50 6-25 (167)
493 4dqx_A Probable oxidoreductase 70.7 3 0.0001 37.6 3.6 36 26-66 26-61 (277)
494 1z0j_A RAB-22, RAS-related pro 70.6 2.7 9.3E-05 33.7 3.1 39 225-263 80-121 (170)
495 1o5i_A 3-oxoacyl-(acyl carrier 70.6 3.3 0.00011 36.5 3.9 36 26-66 18-53 (249)
496 1jbw_A Folylpolyglutamate synt 70.4 4.8 0.00017 38.8 5.3 34 29-64 40-73 (428)
497 1zem_A Xylitol dehydrogenase; 70.3 3.2 0.00011 36.9 3.7 36 26-66 6-41 (262)
498 3ucx_A Short chain dehydrogena 70.3 4.1 0.00014 36.2 4.5 36 26-66 10-45 (264)
499 3e8x_A Putative NAD-dependent 70.2 2.9 9.9E-05 36.2 3.3 37 26-67 20-56 (236)
500 3b85_A Phosphate starvation-in 70.2 2.3 7.9E-05 36.9 2.7 28 30-57 24-51 (208)
No 1
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=100.00 E-value=3.5e-55 Score=421.51 Aligned_cols=315 Identities=54% Similarity=0.879 Sum_probs=246.8
Q ss_pred cchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCcee
Q 017873 14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYA 93 (365)
Q Consensus 14 ~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 93 (365)
.++++|+.++++++++|+|+||||||||||+|+|+|.++|+.|+||+|||+||+++++++|+.+.+..++.+.+.+|+++
T Consensus 2 ~l~~~l~~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~l~~~l~~~~~~~~~~v~~~~~L~~ 81 (334)
T 3iqw_A 2 SMEPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLYA 81 (334)
T ss_dssp CCCSSSHHHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHHHHHTSCCCSSCEECTTCSSEEE
T ss_pred CccccHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCChhHHhccccCCCceeecCCCCcee
Confidence 47899999999999999999999999999999999999999999999999999999999999988888888888899999
Q ss_pred eecCccccc-ccccc---------cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchH
Q 017873 94 MEVDPSVEE-ETGST---------EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPS 163 (365)
Q Consensus 94 ~~~d~~~~~-~~~~~---------~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~ 163 (365)
.++|+...+ ++... .++ .+..++....||+.+...+.++.+.+.+.+||||||||||+++++++|.+|+
T Consensus 82 ~~id~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~ 160 (334)
T 3iqw_A 82 MEIDPNGSMQDLLAGQTGDGDAGMGGV-GVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPT 160 (334)
T ss_dssp EECCC---------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHH
T ss_pred eecCHHHHHHHHHHHhhcccccccccc-hhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHH
Confidence 999988766 22111 233 3444555567999999999999999987799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCC-CCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHH
Q 017873 164 TLEKGLDKMMSLKNKFGGMINQMTRLFGI-DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242 (365)
Q Consensus 164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~ 242 (365)
.+.||+++++++.++++++++++.+.+|. +...+.+++++.++++++.++++++.|+||..|++++|++|+.+++.+++
T Consensus 161 ~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~ 240 (334)
T 3iqw_A 161 VLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETE 240 (334)
T ss_dssp HC-----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHH
Confidence 99999999999999999998888776653 11245677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCC-CcEEEecCCCCCCCCHHHHHHHHHhh
Q 017873 243 RLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDD-FHITKLPLLPEEVTGIEALKAFSQHF 321 (365)
Q Consensus 243 ~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~-~~i~~vp~~~~e~~g~~~L~~l~~~l 321 (365)
++++.|+++|+++.|+|+|++.+|+....|++|++|+..|++++++|.+.|.+ .+++.+|+++.||.|+++|+.+++.|
T Consensus 241 r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl~~~e~~G~~~L~~~~~~l 320 (334)
T 3iqw_A 241 RMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLLVEEVRGKERLEKFSEML 320 (334)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999965654567999999999999999999999998 99999999999999999999999999
Q ss_pred cCCCCCCC
Q 017873 322 VTPYQPST 329 (365)
Q Consensus 322 ~~~~~~~~ 329 (365)
|+++.|-.
T Consensus 321 ~~~~~~~~ 328 (334)
T 3iqw_A 321 IKPFVPPE 328 (334)
T ss_dssp HSCCCCCC
T ss_pred cCCCCCcc
Confidence 99998755
No 2
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=100.00 E-value=1.9e-55 Score=425.30 Aligned_cols=319 Identities=49% Similarity=0.832 Sum_probs=218.3
Q ss_pred cchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCc
Q 017873 14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNL 91 (365)
Q Consensus 14 ~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la--~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l 91 (365)
+++++|+.++++.+++|+|+||||||||||+|+|+|.++| +.|+||+|||+|++++++++|+.+.+..++.+.+.+|+
T Consensus 4 ~l~~~L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~~~~~~~~~~~v~~~~~L 83 (348)
T 3io3_A 4 ELEPTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKFGKDARKVEGLPNL 83 (348)
T ss_dssp SCCSSSHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHHTSCCCSSCEEETTEEEE
T ss_pred ccchhHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHhccccCCCceeccCCCCc
Confidence 6889999999999999999999999999999999999999 89999999999999999999999988889998888999
Q ss_pred eeeecCccccc-ccccc---------cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhC------------CCcEEEEcC
Q 017873 92 YAMEVDPSVEE-ETGST---------EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTM------------DYSCIVFDT 149 (365)
Q Consensus 92 ~~~~~d~~~~~-~~~~~---------~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~------------~yD~IiiDt 149 (365)
++.++|+...+ ++... .++..+...+....||+.+...+.++++.+.+. +||+|||||
T Consensus 84 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDt 163 (348)
T 3io3_A 84 SCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDT 163 (348)
T ss_dssp EEEECCC-----------------------------------------------------------------CCEEEEEC
T ss_pred eEEeeCHHHHHHHHHHHHHhhcccccccHhHHhHHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcC
Confidence 99999988776 22111 134455555566779999999999999988874 799999999
Q ss_pred CCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEE
Q 017873 150 APTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVC 229 (365)
Q Consensus 150 pp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~l 229 (365)
||++|++++|.+|+.+.||+++++++.+++++++ +++..+ +.+++++.++++++.++++.+.|+||..|++++
T Consensus 164 pPtg~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~-~~~~~~------~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vl 236 (348)
T 3io3_A 164 APTGHTLRFLQLPSTLEKLLSKFKDLSGKLGPML-SMMGGG------QQQDIFEKLNEVQKNVSEVNEQFTNPELTTFIC 236 (348)
T ss_dssp SSHHHHHHHTC----------------------------------------------------CHHHHHHTCTTTEEEEE
T ss_pred CCchHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH-HhcccC------chHHHHHHHHHHHHHHHHHHHHHhCcCceEEEE
Confidence 9999999999999999999999999999998887 665433 357889999999999999999999999999999
Q ss_pred eecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCC-CccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCC
Q 017873 230 VCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD-EDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV 308 (365)
Q Consensus 230 Vt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~-~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~ 308 (365)
|++|+.+++.+++++++.|+++|+++.|+|+|++.++. .+..|++|+.|+..|++++++|.+.|++.+++.+|+++.||
T Consensus 237 Vt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~pl~~~e~ 316 (348)
T 3io3_A 237 VCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKMPLLGCEI 316 (348)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSCC
T ss_pred EecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEEEecCCCCCC
Confidence 99999999999999999999999999999999995433 22479999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCCCcchhhhhhh
Q 017873 309 TGIEALKAFSQHFVTPYQPSTSRDTVEDLER 339 (365)
Q Consensus 309 ~g~~~L~~l~~~l~~~~~~~~~~~~~~~~~~ 339 (365)
.|+++|+.+++.||.+.+|..++...|++|.
T Consensus 317 ~G~~~L~~~~~~l~~~~~p~~~~~~~~~~~~ 347 (348)
T 3io3_A 317 RGVENLKKFSKFLLKPYDPKADSDIVFDLEE 347 (348)
T ss_dssp CSHHHHHHHHHHHHSCCCTTTCGGGGGCCC-
T ss_pred CCHHHHHHHHHHHcCCCCcccccchhhhccc
Confidence 9999999999999999999999999999886
No 3
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=100.00 E-value=6.6e-50 Score=387.67 Aligned_cols=321 Identities=37% Similarity=0.626 Sum_probs=267.6
Q ss_pred hhhhhhhcchhhHHhhhc-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceee
Q 017873 7 DQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLV 85 (365)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~ 85 (365)
...|.++.+++++..+.. +.+++|+|+||||||||||+|+|+|.++|+.|+||+|||+|++++++++|+.+.+..+..+
T Consensus 4 ~~~E~~r~lrt~~~~~~~~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v 83 (349)
T 3ug7_A 4 KIKDSINSLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKV 83 (349)
T ss_dssp ------CTTHHHHHHHHHSSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTCHHHHHHCSCCCSSCEEC
T ss_pred HHHHHHHHHhhhHHHhhcccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCCCCCcCcccc
Confidence 457889999999998886 4567788999999999999999999999999999999999999999999999988888888
Q ss_pred cCcCCceeeecCccccc-cccc----c-cCc----cchhH--HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCh
Q 017873 86 NGFSNLYAMEVDPSVEE-ETGS----T-EGM----DSLFS--ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTG 153 (365)
Q Consensus 86 ~~~~~l~~~~~d~~~~~-~~~~----~-~~~----~~~~~--~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~ 153 (365)
.|.++++..++++...+ ++.. . ..+ ..+.. +.....||..+...+.++.+.+++.+||||||||||++
T Consensus 84 ~g~~~l~~~~id~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~ 163 (349)
T 3ug7_A 84 KGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTG 163 (349)
T ss_dssp TTCSSEEEEECCHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCT
T ss_pred ccccceeeeccCHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCCh
Confidence 88899999999887766 1110 0 000 11111 12346799999999999999988778999999999999
Q ss_pred hHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhhh---CCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEe
Q 017873 154 HTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLF---GIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCV 230 (365)
Q Consensus 154 ~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lV 230 (365)
+++++|.+|+.+.+|++++++++.++..+..++..+. |.....+.+++++.++++++++++++++|+||..|++++|
T Consensus 164 ~tlrlL~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV 243 (349)
T 3ug7_A 164 HTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLV 243 (349)
T ss_dssp TGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEE
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 9999999999999999999999998887776665543 3333456789999999999999999999999999999999
Q ss_pred ecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCC
Q 017873 231 CIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTG 310 (365)
Q Consensus 231 t~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g 310 (365)
++|+.+++.+++++++.|++.|+++.|+|+|++. +. ...|++|+.+...|+.+++++.+.|+..++..+|+.+.++.|
T Consensus 244 ~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~-~~-~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~e~~g 321 (349)
T 3ug7_A 244 VIPEEMSILESERAMKALQKYGIPIDAVIVNQLI-PE-DVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKG 321 (349)
T ss_dssp ECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-CS-CCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSSCSCS
T ss_pred ECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCc-cc-cCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCCCCC
Confidence 9999999999999999999999999999999994 43 235999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCC
Q 017873 311 IEALKAFSQHFVTPYQPST 329 (365)
Q Consensus 311 ~~~L~~l~~~l~~~~~~~~ 329 (365)
+++|+.+++.||++.+|..
T Consensus 322 ~~~L~~~~~~l~~~~~~~~ 340 (349)
T 3ug7_A 322 IETLKQIAKILYGEEEKEE 340 (349)
T ss_dssp HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCCCccc
Confidence 9999999999999988865
No 4
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-49 Score=381.99 Aligned_cols=318 Identities=56% Similarity=0.935 Sum_probs=268.2
Q ss_pred hhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCC
Q 017873 11 ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSN 90 (365)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~ 90 (365)
.++.++++|+.+++++.++|+|+||||||||||+|+|+|.++|++|+||++||+|++++++++|+.+.+..+..+.|..+
T Consensus 2 ~~r~lr~~l~~~~~~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~~~l~~~l~~~~~~~~~~~~g~~~ 81 (329)
T 2woo_A 2 SFDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFGKDARKVPGFDN 81 (329)
T ss_dssp -----CCSTHHHHHCTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTCHHHHHHSSCCCSSCEECTTCSS
T ss_pred CcchhhccHHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCcCHHHHhCCcCCCCCeeccCCCC
Confidence 47889999999998888999999999999999999999999999999999999999999999999987767777778889
Q ss_pred ceeeecCccccc-ccc----c--cc-CccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhch
Q 017873 91 LYAMEVDPSVEE-ETG----S--TE-GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFP 162 (365)
Q Consensus 91 l~~~~~d~~~~~-~~~----~--~~-~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp 162 (365)
+...++++...+ ++. . .. -+...+..+...+||+.+...+.++.+.+.+.+||||||||||++++++++.+|
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p 161 (329)
T 2woo_A 82 LSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFP 161 (329)
T ss_dssp EEEEECCHHHHHHHHHHTC--------CCHHHHHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHH
T ss_pred eeEEecCHHHHHHHHHHHHhhhhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHH
Confidence 998888877655 111 1 00 011222333456799999999999999998668999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHH
Q 017873 163 STLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242 (365)
Q Consensus 163 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~ 242 (365)
+.+.+|+++++++..++.++++.+++.+|.. .+.+.+...++.+++.++.+.+.++||..|++++|++|+.+++.+++
T Consensus 162 ~~~~~~l~~l~~~~~~~~~~~~~l~~~~g~~--~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~ 239 (329)
T 2woo_A 162 TVLEKALGKLGGLSSRFGPMINQMGSIMGVN--ANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETE 239 (329)
T ss_dssp HHHHHHHHHHHTSCSSCHHHHHHHHHHHC-------CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHH
Confidence 9999999999999988888777776665531 23345677889999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhhc
Q 017873 243 RLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFV 322 (365)
Q Consensus 243 ~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l~ 322 (365)
++++.|+.+|+++.++|+|++.+|+ ...|++|..+...|+++++++.+.|.+.++..+|+++.++.|+++|+.+++.++
T Consensus 240 ~~~~~L~~~gi~v~gvVvN~~~~p~-~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~vP~~~~e~~g~~~L~~l~~~l~ 318 (329)
T 2woo_A 240 RMIQELTSYEIDTHNIVVNQLLLDP-NTTCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQVPAEVRGTEALKSFSEMLV 318 (329)
T ss_dssp HHHHHHHHHTCEEEEEEEEEECCCS-SCCCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSCCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCEEEEeCCcCcc-cccCHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999996466 457999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCc
Q 017873 323 TPYQPSTSR 331 (365)
Q Consensus 323 ~~~~~~~~~ 331 (365)
.++.|..++
T Consensus 319 ~~~~~~~~~ 327 (329)
T 2woo_A 319 KPYVYPTSG 327 (329)
T ss_dssp SCCC-----
T ss_pred cCCCccccc
Confidence 998775543
No 5
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=6.4e-48 Score=370.19 Aligned_cols=306 Identities=38% Similarity=0.663 Sum_probs=255.9
Q ss_pred HHhhhc-CCC-eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeec
Q 017873 19 VRNILE-QDS-LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEV 96 (365)
Q Consensus 19 l~~~~~-~~~-~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (365)
+++++. .++ ++|+|+||||||||||+|+|+|.++|++|+||++||+|++++++++|+.+.+..+..+ .++++...+
T Consensus 3 i~~~l~~~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v--~~~l~~~~~ 80 (324)
T 3zq6_A 3 FKDLFKFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKI--TENLYAVEI 80 (324)
T ss_dssp GGGGCCCBTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTSCCCSSCEEE--ETTEEEEEC
T ss_pred hhHhhcCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHhCCcCCCCCccC--CCCceeecc
Confidence 344443 234 6899999999999999999999999999999999999999999999999877666665 378888888
Q ss_pred Cccccc-c----ccc------ccCccchhHH--hhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchH
Q 017873 97 DPSVEE-E----TGS------TEGMDSLFSE--LANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPS 163 (365)
Q Consensus 97 d~~~~~-~----~~~------~~~~~~~~~~--~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~ 163 (365)
++...+ + +.. ..++..+... .....||..+...+.++.+.+++.+||+|||||||+++++++|.+|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~ 160 (324)
T 3zq6_A 81 DPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPE 160 (324)
T ss_dssp CHHHHHHHHHHHC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHH
Confidence 887765 1 111 1122222221 23467999999999999998887789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCC-CCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHH
Q 017873 164 TLEKGLDKMMSLKNKFGGMINQMTRLFGI-DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242 (365)
Q Consensus 164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~ 242 (365)
.+.+|++++++++++...+...++.+++. +...+.+++++.+++++++++++.++|+||..|++++|++|+.+++.+++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~ 240 (324)
T 3zq6_A 161 IMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESE 240 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHH
Confidence 99999999999999887766655544321 11123378999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhhc
Q 017873 243 RLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFV 322 (365)
Q Consensus 243 ~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l~ 322 (365)
++++.|++.|+++.|+|+|++. +. ...|++|+.+...|+++++++.+.|+..++..+|+.+.|+.|+++|+.+++.||
T Consensus 241 ~~~~~l~~~gi~v~gvV~N~~~-~~-~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~~~e~~g~~~L~~~~~~l~ 318 (324)
T 3zq6_A 241 RAMKALEKYSIHADGVIVNQVL-PE-ESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLLKKEAKGIETLEKIAEQLY 318 (324)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEC-CS-CCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCccEEEEcCCc-cc-cCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999994 44 236999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 017873 323 TPYQPS 328 (365)
Q Consensus 323 ~~~~~~ 328 (365)
++.+|.
T Consensus 319 ~~~~p~ 324 (324)
T 3zq6_A 319 GEPEPE 324 (324)
T ss_dssp CSCC--
T ss_pred CCCCCC
Confidence 998873
No 6
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=100.00 E-value=6.4e-48 Score=374.21 Aligned_cols=315 Identities=46% Similarity=0.816 Sum_probs=256.3
Q ss_pred chhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCce
Q 017873 15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY 92 (365)
Q Consensus 15 ~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la--~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~ 92 (365)
+.++|+.++++..++|+|+||||||||||+|+|||.+|| +.|+||+|||+|++++++++||.+.+..++.+.|+.|++
T Consensus 5 ~~~~l~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~~~l~~~lg~~~~~~~~~v~gl~~l~ 84 (354)
T 2woj_A 5 VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFGKDARKVTGMNNLS 84 (354)
T ss_dssp CCSSCHHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCCHHHHHTSCCCSSCEECTTCSSEE
T ss_pred cCccHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHhCCCCCCCceeecCCCceE
Confidence 678899999888889999999999999999999999999 999999999999999999999998888888888889999
Q ss_pred eeecCccccc-ccccc-----c---------Cc-----cchhHHhhhcCCCHHHHHHHHHHHHHHHhC------CCcEEE
Q 017873 93 AMEVDPSVEE-ETGST-----E---------GM-----DSLFSELANAIPGIDEAMSFAEMLKLVQTM------DYSCIV 146 (365)
Q Consensus 93 ~~~~d~~~~~-~~~~~-----~---------~~-----~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~------~yD~Ii 146 (365)
..++++...+ ++... . ++ .....++....||+.+...+.++++.+++. +|||||
T Consensus 85 ~~~id~~~~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~II 164 (354)
T 2woj_A 85 CMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVI 164 (354)
T ss_dssp EEECCHHHHHHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEE
T ss_pred EEecCHHHHHHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEE
Confidence 9999887655 22110 0 12 122234445679999999999999998873 699999
Q ss_pred EcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 017873 147 FDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTT 226 (365)
Q Consensus 147 iDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~ 226 (365)
|||||+++++++|.+|+.+.+|+++++++.+++.+++..+..+ +.++++..++++++.++++.+.|+||..+.
T Consensus 165 iDtpPtG~tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~ 237 (354)
T 2woj_A 165 FDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGA-------GNVDISGKLNELKANVETIRQQFTDPDLTT 237 (354)
T ss_dssp EECCCHHHHHHHHTHHHHHHHHHHCC----------------------------CHHHHHHHHHHHHHHHHHHTCTTTEE
T ss_pred ECCCCchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------ChHHHHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 9999999999999999999999999999888887766554332 124578899999999999999999999999
Q ss_pred EEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCcc--chHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCC
Q 017873 227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDV--ESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLL 304 (365)
Q Consensus 227 ~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~--~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~ 304 (365)
+++|++|+.+++.+++++++.|+.+|+++.++|+|++.+|.... .|++|..+...|+++++++...|.+.++.++|+.
T Consensus 238 ~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~~~~~~~~~~~~~~~~~~~~q~~~l~~l~~~~~~~~v~~~P~~ 317 (354)
T 2woj_A 238 FVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQIDELYEDFHVVKMPLC 317 (354)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCC------CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCCCcccccccccHHHHHHHHHHHHHHHHHHHhcCCCCEEEeecC
Confidence 99999999999999999999999999999999999995365322 5889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCCCcchhhh
Q 017873 305 PEEVTGIEALKAFSQHFVTPYQPSTSRDTVED 336 (365)
Q Consensus 305 ~~e~~g~~~L~~l~~~l~~~~~~~~~~~~~~~ 336 (365)
..++.|.++|+.+++.++.+.+|.+.+..+|+
T Consensus 318 ~~~~~g~~~l~~la~~l~~~~~~~~~~~~~~~ 349 (354)
T 2woj_A 318 AGEIRGLNNLTKFSQFLNKEYNPITDGKVIYE 349 (354)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCCHHHHGGGGGG
T ss_pred CCCCccHHHHHHHHHHHhcCCCCccchhhhhh
Confidence 99999999999999999998877444444443
No 7
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=100.00 E-value=1.2e-42 Score=338.22 Aligned_cols=265 Identities=17% Similarity=0.250 Sum_probs=212.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-c--
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-E-- 103 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~-- 103 (365)
+++|+|+||||||||||+|+|+|.++|+.|+||++||+ |+++++++|+.+.+..++.+ .+|++..++|+...+ +
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~~~~~~~~~~~~~v--~~~L~~~eid~~~~~~~~~ 77 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPLLLEQTLTPDPQQI--APNLEVVQFQSSVLLERNW 77 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHHHHTSCCCSSCEEE--ETTEEEEECCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHHhhCCCCCCCcccc--cccccccccCHHHHHHHHH
Confidence 36899999999999999999999999999999999999 99999999999877777777 489999999987765 1
Q ss_pred ---------cccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHH
Q 017873 104 ---------TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMS 174 (365)
Q Consensus 104 ---------~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~ 174 (365)
.....++..+........||+++...+.++.+.+.+.+||||||||||+++++++|.+|+.+.||++++++
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~~l~~l~~ 157 (374)
T 3igf_A 78 EEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQ 157 (374)
T ss_dssp HHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHHHHHHHHH
Confidence 11123444455555667899999999999999888878999999999999999999999999999999988
Q ss_pred HHHh------h--hhhHHHHHhh-hCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHH
Q 017873 175 LKNK------F--GGMINQMTRL-FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV 245 (365)
Q Consensus 175 ~~~~------~--~~~~~~~~~~-~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~ 245 (365)
+.++ + .+++.++.+. +|. ..+.+++++.++++++++++++++|+||+.|++++|++|+.+++.++++++
T Consensus 158 ~~~~~~~g~~~~~~~~~~p~~~~~~~~--~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~ea~r~~ 235 (374)
T 3igf_A 158 LFVNSDLGKTIAESPLIQPLISSFFNV--NWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVSVRYLW 235 (374)
T ss_dssp CC-------------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHHHHHHH
T ss_pred HHhhhccccccccchhhhhhhhhhccC--CCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHHHHHHH
Confidence 8777 3 4445554332 232 356688999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhh
Q 017873 246 QELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHF 321 (365)
Q Consensus 246 ~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l 321 (365)
+.|+++|+++.|+|+|+ ++ ++++|.+.|.+.++..+|+++.| .|+.+++.+
T Consensus 236 ~~L~~~gi~v~gvVvN~---~~-----------------~l~~i~~~F~~~~v~~vpl~~~e-----~l~~l~~~l 286 (374)
T 3igf_A 236 GSAQQIGLTIGGVIQVS---SQ-----------------TEGDLSAEFTPLSVTVVPDVTKG-----DWQPLIDAL 286 (374)
T ss_dssp HHHHHHTCCEEEEEECC---CS-----------------CCCCCGGGSTTSCEEECCCCBTT-----BCHHHHHHC
T ss_pred HHHHHcCCCccEEEEcC---HH-----------------HHHHHHHhcCCCceEECCCCChh-----HHHHHHHHh
Confidence 99999999999999999 21 45778899999999999999888 788888777
No 8
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=100.00 E-value=5.7e-36 Score=308.72 Aligned_cols=275 Identities=29% Similarity=0.411 Sum_probs=212.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-cc
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET 104 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~ 104 (365)
++++|+|+||||||||||+|+|+|.++|++|+|||+||+|++++++++|+.+.+..+..+.+.+|+...++++.... .+
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~~ 85 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQY 85 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHHH
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCCcCHHHHhCCcccCCCceeccchhhhhccCCHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999988777887777889999888876544 11
Q ss_pred ----ccc-cCc-cc-hhHHhhh--cCCCHHHHHHHHHHHHHHH----hCCCcEEEEcCCCChhHHHhhhchHHHHHHHHH
Q 017873 105 ----GST-EGM-DS-LFSELAN--AIPGIDEAMSFAEMLKLVQ----TMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDK 171 (365)
Q Consensus 105 ----~~~-~~~-~~-~~~~~~~--~~pg~~~~~~l~~l~~~l~----~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~ 171 (365)
... .++ .. ....... ..++..+...+..+...+. ..+||+|||||||++++++++.+|+.+.+|+++
T Consensus 86 ~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~~lrll~lP~~~~~~l~~ 165 (589)
T 1ihu_A 86 RARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDS 165 (589)
T ss_dssp HHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHHHHHHCGGGGTCCC--
T ss_pred HHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchhHHHHHHhHHHHHHHHHH
Confidence 000 011 00 0011101 1123445545555555444 126999999999999999999999999888766
Q ss_pred HHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC
Q 017873 172 MMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251 (365)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~ 251 (365)
.......+ .+++ + +...++.+.++.+.+.||..|.+++|++|+.+++.++.++++.|+++
T Consensus 166 ~~~~~~~l----~~~~---~-------------l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~ 225 (589)
T 1ihu_A 166 NPEGASCL----GPMA---G-------------LEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAI 225 (589)
T ss_dssp ----CCCC----GGGG---G-------------CCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hhcccccc----chhh---h-------------hhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhC
Confidence 53221111 1111 1 12234567788889999999999999999999999999999999999
Q ss_pred CCCcCeEEEcCccCCCCc-cchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhh
Q 017873 252 EIDTHNIIINQVLYDDED-VESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHF 321 (365)
Q Consensus 252 gi~v~~vVvN~~~~~~~~-~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l 321 (365)
|+++.++|+|++. +... ..|++|+.+...|++++++|.+.|++.++..+|+.+.++.|.+.|+.++..+
T Consensus 226 g~~~~gvVlN~v~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~vPl~~~e~~g~~~l~~~~~~~ 295 (589)
T 1ihu_A 226 GLKNQYLVINGVL-PKTEAANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNMVGVSALSRLLSTQ 295 (589)
T ss_dssp TCCCEEEEEEEEC-CGGGGSSCHHHHHHHHHHHHHHHTCCHHHHTSCEEEEECCSSCCCSHHHHHHTTCSC
T ss_pred CCCCCEEEEcCCc-CccccccCHHHHHHHHHHHHHHHHHHHhccCCCEEEecCCCCCCCCHHHHHHHHhhh
Confidence 9999999999994 4322 3689999999999999999999999999999999999999999999998776
No 9
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.98 E-value=1e-31 Score=276.97 Aligned_cols=259 Identities=28% Similarity=0.409 Sum_probs=182.2
Q ss_pred hhHHhhhc---CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCcee
Q 017873 17 GSVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYA 93 (365)
Q Consensus 17 ~~l~~~~~---~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 93 (365)
+.|+.++. ..+++++|++|||||||||+|+|+|..++++|+||++||+||+++++.+|+.. .+++..
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~l~~~l~~~----------~~~l~~ 382 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGS----------LNNLQV 382 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC---------------------CCEEE
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcccHhHHhccc----------CCCcee
Confidence 45666655 35678899999999999999999999999999999999999999999999863 245555
Q ss_pred eecCccccc-----cccc--ccCccch-hHHh--hhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchH
Q 017873 94 MEVDPSVEE-----ETGS--TEGMDSL-FSEL--ANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPS 163 (365)
Q Consensus 94 ~~~d~~~~~-----~~~~--~~~~~~~-~~~~--~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~ 163 (365)
..+++.... .+.. ...+... .... ....|+..+...+..+.+.+++.+||||||||||++++++++.+|+
T Consensus 383 ~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~ 462 (589)
T 1ihu_A 383 SRIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATG 462 (589)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC-
T ss_pred eecchHHHHHHHHHHHHHhhhccCChhhHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHH
Confidence 555543222 0100 0111110 0111 1123556666677777777665579999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHH
Q 017873 164 TLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETER 243 (365)
Q Consensus 164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~ 243 (365)
.+..++.+.. +. .. .+..+...+.||..+.+++|++|+.+++.++.+
T Consensus 463 ~~~~~~~~~~-----------------~~---------------~~-~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~ 509 (589)
T 1ihu_A 463 AYHREIAKKM-----------------GE---------------KG-HFTTPMMLLQDPERTKVLLVTLPETTPVLEAAN 509 (589)
T ss_dssp --------------------------------------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHhc-----------------cc---------------ch-HHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHH
Confidence 8654432211 10 00 122333457788889999999999999999999
Q ss_pred HHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHh
Q 017873 244 LVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQH 320 (365)
Q Consensus 244 ~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~ 320 (365)
+++.|+..|+++.++|+|++. +.....|++|..|...|.++++++.+.|+ .++..+|+.+.||.|++.|+.++.+
T Consensus 510 ~~~~l~~~g~~~~gvVvN~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~v~~iP~~~~e~~g~~~l~~~~~~ 584 (589)
T 1ihu_A 510 LQADLERAGIHPWGWIINNSL-SIADTRSPLLRMRAQQELPQIESVKRQHA-SRVALVPVLASEPTGIDKLKQLAGH 584 (589)
T ss_dssp HHHHHHHTTCCCCEEEEEEES-TTSCCCCHHHHHHHHHHHHHHHHHHTTTC-SSEEEEECCSSCCCSHHHHHHHHCC
T ss_pred HHHHHHHCCCCCCEEEEeCCc-CCCCCcCHHHHHHHHHHHHHHHHHHHhcC-CcEEEccCCCCCCCCHHHHHHHhcc
Confidence 999999999999999999994 44346789999999999999999999995 5899999999999999999998754
No 10
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.92 E-value=8.9e-25 Score=205.68 Aligned_cols=190 Identities=17% Similarity=0.217 Sum_probs=133.1
Q ss_pred hhhhhhhhcchhhHHhhh-cCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873 6 QDQDQELEIPEGSVRNIL-EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT 83 (365)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~-~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~ 83 (365)
+...|+++.++++|.... +++.+.|+|+|+|||+||||+|+|||..+|+.|+||||||+|++ ++++.+|+.+...
T Consensus 70 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~--- 146 (286)
T 3la6_A 70 DLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVN--- 146 (286)
T ss_dssp CHHHHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTT---
T ss_pred CHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCC---
Confidence 346799999999998744 45667788999999999999999999999999999999999987 7899999875321
Q ss_pred eecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhh
Q 017873 84 LVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ 160 (365)
Q Consensus 84 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~ 160 (365)
++.++.....+....+.-....++..+... ...|+..+. ..+..+++.+++ .||+|||||||.....+..
T Consensus 147 ---gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g--~~~~~~~ell~~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~da~- 219 (286)
T 3la6_A 147 ---GLSEILIGQGDITTAAKPTSIAKFDLIPRG--QVPPNPSELLMSERFAELVNWASK-NYDLVLIDTPPILAVTDAA- 219 (286)
T ss_dssp ---CHHHHHHTSSCTTTTCEECSSTTEEEECCC--SCCSCHHHHHTSHHHHHHHHHHHH-HCSEEEEECCCTTTCTHHH-
T ss_pred ---CHHHHccCCCCHHHheeccCCCCEEEEeCC--CCCCCHHHHhchHHHHHHHHHHHh-CCCEEEEcCCCCcchHHHH-
Confidence 111111111111111100001112111111 122344443 367778888877 6999999999975432211
Q ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHH
Q 017873 161 FPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE 240 (365)
Q Consensus 161 lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~e 240 (365)
.+ . ...+.+++|+.++.++..+
T Consensus 220 ------------------------~l----~------------------------------~~aD~vllVv~~~~~~~~~ 241 (286)
T 3la6_A 220 ------------------------IV----G------------------------------RHVGTTLMVARYAVNTLKE 241 (286)
T ss_dssp ------------------------HH----T------------------------------TTCSEEEEEEETTTSBHHH
T ss_pred ------------------------HH----H------------------------------HHCCeEEEEEeCCCCcHHH
Confidence 00 0 1135799999999999999
Q ss_pred HHHHHHHHHhCCCCcCeEEEcCc
Q 017873 241 TERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 241 t~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.++++.|+..|+++.|+|+|++
T Consensus 242 ~~~~~~~l~~~g~~~~GvVlN~v 264 (286)
T 3la6_A 242 VETSLSRFEQNGIPVKGVILNSI 264 (286)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEEcCc
Confidence 99999999999999999999999
No 11
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.90 E-value=1.1e-23 Score=196.70 Aligned_cols=191 Identities=17% Similarity=0.173 Sum_probs=130.3
Q ss_pred chhhhhhhhcchhhHHhhhc-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCc
Q 017873 5 DQDQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTP 82 (365)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~~~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~ 82 (365)
.+...|+++.++++|..... +.++.|+|+|.|||+||||+|+|||.++|+.|+||||||+|++ ++++.+|+.+...
T Consensus 59 ~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~-- 136 (271)
T 3bfv_A 59 KSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNE-- 136 (271)
T ss_dssp TSHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSS--
T ss_pred CCHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCC--
Confidence 34567999999999997754 4456677999999999999999999999999999999999987 7899999865321
Q ss_pred eeecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhh
Q 017873 83 TLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL 159 (365)
Q Consensus 83 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l 159 (365)
++.++.....+....+.-....++..+.. ....++..+. ..+.++++.+++ +||||||||||.....+..
T Consensus 137 ----gl~~~L~~~~~l~~~i~~~~~~~l~vl~~--g~~~~~~~ell~~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~d~~ 209 (271)
T 3bfv_A 137 ----GLSSLLLNWSTYQDSIISTEIEDLDVLTS--GPIPPNPSELITSRAFANLYDTLLM-NYNFVIIDTPPVNTVTDAQ 209 (271)
T ss_dssp ----SHHHHHTTSSCHHHHEEECSSTTEEEECC--CSCCSCHHHHHTSHHHHHHHHHHHH-HCSEEEEECCCTTTCSHHH
T ss_pred ----CHHHHhCCCCCHHHcEEeCCCCCEEEEEC--CCCCCCHHHHhChHHHHHHHHHHHh-CCCEEEEeCCCCchHHHHH
Confidence 11111111111111110000011111110 0112333333 356777777776 6999999999965422111
Q ss_pred hchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHH
Q 017873 160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY 239 (365)
Q Consensus 160 ~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~ 239 (365)
.+. .. .+.+++|+.++.++..
T Consensus 210 -------------------------~l~------------------------------~~----aD~vilVv~~~~~~~~ 230 (271)
T 3bfv_A 210 -------------------------LFS------------------------------KF----TGNVVYVVNSENNNKD 230 (271)
T ss_dssp -------------------------HHH------------------------------HH----HCEEEEEEETTSCCHH
T ss_pred -------------------------HHH------------------------------HH----CCEEEEEEeCCCCcHH
Confidence 000 01 2478999999999999
Q ss_pred HHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 240 ETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 240 et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
.+.++++.|+..|+++.|+|+|++
T Consensus 231 ~~~~~~~~l~~~~~~~~GvVlN~~ 254 (271)
T 3bfv_A 231 EVKKGKELIEATGAKLLGVVLNRM 254 (271)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCC
Confidence 999999999999999999999999
No 12
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.90 E-value=2e-23 Score=197.72 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=129.9
Q ss_pred hhhhhhhhcchhhHHhhhc-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873 6 QDQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT 83 (365)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~ 83 (365)
+...|+++.++++|..... ..++.|+|+|.|||+||||+|+|||..+|+.|+||||||+|++ ++++.+|+.....
T Consensus 82 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~--- 158 (299)
T 3cio_A 82 DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEH--- 158 (299)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSS---
T ss_pred CHHHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCC---
Confidence 4457899999999987654 4556778999999999999999999999999999999999985 9999999865321
Q ss_pred eecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhh
Q 017873 84 LVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ 160 (365)
Q Consensus 84 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~ 160 (365)
++.++.....+....+.-....++..+.. ....++..+. ..+.++++.+++ +||+|||||||.....+..
T Consensus 159 ---gl~~~L~~~~~l~~~i~~~~~~~l~vl~~--g~~~~~~~ell~~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~d~~- 231 (299)
T 3cio_A 159 ---GLSEYLAGKDELNKVIQHFGKGGFDVITR--GQVPPNPSELLMRDRMRQLLEWAND-HYDLVIVDTPPMLAVSDAA- 231 (299)
T ss_dssp ---SHHHHHTTSSCHHHHCEEETTTTEEEECC--CSCCSCHHHHHTSHHHHHHHHHHHH-HCSEEEEECCCTTTCTHHH-
T ss_pred ---CHHHHCcCCCCHHHhhhccCCCCEEEEEC--CCCCCCHHHHhCHHHHHHHHHHHHh-CCCEEEEcCCCCchhHHHH-
Confidence 11111111111111110000011111111 0112333332 356777777776 6999999999965421111
Q ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHH
Q 017873 161 FPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE 240 (365)
Q Consensus 161 lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~e 240 (365)
.+. .. .+.+++|+.++.++..+
T Consensus 232 ------------------------~l~------------------------------~~----ad~vilV~~~~~~~~~~ 253 (299)
T 3cio_A 232 ------------------------VVG------------------------------RS----VGTSLLVARFGLNTAKE 253 (299)
T ss_dssp ------------------------HHG------------------------------GG----CSEEEEEEETTTSCTTH
T ss_pred ------------------------HHH------------------------------HH----CCEEEEEEcCCCChHHH
Confidence 000 01 24789999999999999
Q ss_pred HHHHHHHHHhCCCCcCeEEEcCc
Q 017873 241 TERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 241 t~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.++++.|+..|+++.|+|+|++
T Consensus 254 ~~~~~~~l~~~~~~~~GvVlN~~ 276 (299)
T 3cio_A 254 VSLSMQRLEQAGVNIKGAILNGV 276 (299)
T ss_dssp HHHHHHHHHHTTCCCCCEEEEEC
T ss_pred HHHHHHHHHhCCCCeEEEEEeCC
Confidence 99999999999999999999999
No 13
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.88 E-value=4.1e-22 Score=181.99 Aligned_cols=173 Identities=15% Similarity=0.161 Sum_probs=110.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCce---eeecCc------
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY---AMEVDP------ 98 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~---~~~~d~------ 98 (365)
|+|+| |+||||||||+|+|||.+||++|+||++||+|++++++.+||........ ..+..++. ......
T Consensus 1 mkI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~l~~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T 3kjh_A 1 MKLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSIEEAYA-ITPLIEMKDEIREKTGDGGLLIL 78 (254)
T ss_dssp CEEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCHHHHHT-SCCGGGCHHHHHHHHCSSSCCCS
T ss_pred CEEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcChHHHhCCCcccccc-cccchhHHHHHHhhccCCccccc
Confidence 46788 89999999999999999999999999999999999999999875321000 00000000 000000
Q ss_pred ccccc-cc-----cccCccc-hhHHh-hhcCCC--HHHHHHHHHHHHHH-HhCCCcEEEEcCCCChhHHHhhhchHHHHH
Q 017873 99 SVEEE-TG-----STEGMDS-LFSEL-ANAIPG--IDEAMSFAEMLKLV-QTMDYSCIVFDTAPTGHTLRLLQFPSTLEK 167 (365)
Q Consensus 99 ~~~~~-~~-----~~~~~~~-~~~~~-~~~~pg--~~~~~~l~~l~~~l-~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~ 167 (365)
...++ +. ...++.. +.... .....+ ..+...+.++++.+ +. +||||||||||+.+.....
T Consensus 79 ~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~yD~viiD~pp~~~~~~~~-------- 149 (254)
T 3kjh_A 79 NPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLD-KKEAVVMDMGAGIEHLTRG-------- 149 (254)
T ss_dssp SCCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHT-CCSEEEEEECTTCTTCCHH--------
T ss_pred CCchhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccC-CCCEEEEeCCCcccHHHHH--------
Confidence 00000 00 0011111 00000 000001 12224577888887 65 7999999999976542111
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHH
Q 017873 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQE 247 (365)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~ 247 (365)
.+ ...+.+++|+.|+..++..+.++.+.
T Consensus 150 --------------------------------------------------~l--~~aD~viiv~~~~~~s~~~~~~~~~~ 177 (254)
T 3kjh_A 150 --------------------------------------------------TA--KAVDMMIAVIEPNLNSIKTGLNIEKL 177 (254)
T ss_dssp --------------------------------------------------HH--TTCSEEEEEECSSHHHHHHHHHHHHH
T ss_pred --------------------------------------------------HH--HHCCEEEEecCCCHHHHHHHHHHHHH
Confidence 01 11358999999999999999999999
Q ss_pred HHhCCCCcCeEEEcCc
Q 017873 248 LTKFEIDTHNIIINQV 263 (365)
Q Consensus 248 L~~~gi~v~~vVvN~~ 263 (365)
+...+++..++|+|++
T Consensus 178 ~~~~~~~~~~~v~N~~ 193 (254)
T 3kjh_A 178 AGDLGIKKVRYVINKV 193 (254)
T ss_dssp HHHHTCSCEEEEEEEE
T ss_pred HHHcCCccEEEEEeCC
Confidence 9999998889999999
No 14
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.88 E-value=1.5e-21 Score=185.00 Aligned_cols=188 Identities=19% Similarity=0.235 Sum_probs=102.4
Q ss_pred hhhcchhhHHhhhcCCC-eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcC
Q 017873 11 ELEIPEGSVRNILEQDS-LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS 89 (365)
Q Consensus 11 ~~~~~~~~l~~~~~~~~-~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~ 89 (365)
....++..|......+. +.|+|+ |||||||||+|+|||.+||++|+||++||+|++.+++.+|+..... .....+.
T Consensus 24 ~~~~l~~~l~~~~~~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~--~l~d~l~ 100 (307)
T 3end_A 24 GEGSVQVHLDEADKITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVP--TVIDVLK 100 (307)
T ss_dssp ----------------CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCC--CHHHHHH
T ss_pred ccchhhhhhccccccCCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCC--CHHHHHh
Confidence 33445555555544444 455577 9999999999999999999999999999999999999888853211 1000000
Q ss_pred C--ceeeecCcccccccccccCccchhHHh--h-hcCCCHHHHHHHHHHHHH--HHhCCCcEEEEcCCCChhHHHhhhch
Q 017873 90 N--LYAMEVDPSVEEETGSTEGMDSLFSEL--A-NAIPGIDEAMSFAEMLKL--VQTMDYSCIVFDTAPTGHTLRLLQFP 162 (365)
Q Consensus 90 ~--l~~~~~d~~~~~~~~~~~~~~~~~~~~--~-~~~pg~~~~~~l~~l~~~--l~~~~yD~IiiDtpp~~~~l~~l~lp 162 (365)
+ ......+....+ .....++..+.... . ....... ......+++. +.+ .||||||||||+.....+..
T Consensus 101 ~~~~~~~~~~~~~~i-~~~~~~l~vlp~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~yD~ViiD~p~~~~~~~~~~-- 175 (307)
T 3end_A 101 DVDFHPEELRPEDFV-FEGFNGVMCVEAGGPPAGTGCGGYV-VGQTVKLLKQHHLLD-DTDVVIFDVLGDVVCGGFAA-- 175 (307)
T ss_dssp HTTSCGGGCCHHHHC-EECGGGCEEEECCCCCSSSSCTTHH-HHHHHHHHHHTTTTS-SCSEEEEEECCSSCCGGGGG--
T ss_pred hccccccCCCHHHhh-ccCCCCceEEECCCcccccccchhh-hHHHHHHHHhhhccc-cCCEEEEeCCCccchHHHHH--
Confidence 0 000000000000 00111111110000 0 0001111 1122233433 333 79999999999664221110
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHH
Q 017873 163 STLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242 (365)
Q Consensus 163 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~ 242 (365)
.+. ..+.+++|+.|+..++..+.
T Consensus 176 -------------------------------------------------------~l~--~aD~viiv~~~~~~s~~~~~ 198 (307)
T 3end_A 176 -------------------------------------------------------PLQ--HADQAVVVTANDFDSIYAMN 198 (307)
T ss_dssp -------------------------------------------------------GGG--TCSEEEEEECSSHHHHHHHH
T ss_pred -------------------------------------------------------HHH--HCCEEEEEecCcHHHHHHHH
Confidence 011 13579999999999999999
Q ss_pred HHHHHHHh----CCCCcCeEEEcCc
Q 017873 243 RLVQELTK----FEIDTHNIIINQV 263 (365)
Q Consensus 243 ~~~~~L~~----~gi~v~~vVvN~~ 263 (365)
++++.++. .++++.|+|+|++
T Consensus 199 ~~~~~l~~~~~~~~~~~~gvV~N~~ 223 (307)
T 3end_A 199 RIIAAVQAKSKNYKVRLAGCVANRS 223 (307)
T ss_dssp HHHHHHHTTTTTCCCEEEEEEEESC
T ss_pred HHHHHHHHhhhcCCCceEEEEEecC
Confidence 99999986 4667788999999
No 15
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.87 E-value=8.7e-22 Score=182.58 Aligned_cols=169 Identities=20% Similarity=0.185 Sum_probs=110.4
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC-ChhhHhhcccCCC----ceeec---CcCCceeeec
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKT----PTLVN---GFSNLYAMEV 96 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~-~l~~~~~~~~~~~----~~~~~---~~~~l~~~~~ 96 (365)
+.++.|+|+|+||||||||+|+|||.+|+++|+||++||+|++. +++.+|+...... ..... ..+|+.++..
T Consensus 16 ~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~ 95 (262)
T 2ph1_A 16 KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSM 95 (262)
T ss_dssp TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECG
T ss_pred cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEec
Confidence 34678889999999999999999999999999999999999996 6888888653210 00000 0112221111
Q ss_pred CcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHH
Q 017873 97 DPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK 176 (365)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~ 176 (365)
... +.. ........+......+.++++.+.+.+||||||||||+.+...+.
T Consensus 96 ~~~----------~~~--~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~----------------- 146 (262)
T 2ph1_A 96 QFL----------LPK--ENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLT----------------- 146 (262)
T ss_dssp GGG----------STT--CSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHH-----------------
T ss_pred ccc----------CCC--cccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHH-----------------
Confidence 000 000 000000112222234555655554237999999999976521110
Q ss_pred HhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcC
Q 017873 177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTH 256 (365)
Q Consensus 177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~ 256 (365)
.. .+. ..+.+++|+.|+..++..+.++++.++..|+++.
T Consensus 147 --------~~------------------------------~~~---~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~ 185 (262)
T 2ph1_A 147 --------VM------------------------------QDA---KPTGVVVVSTPQELTAVIVEKAINMAEETNTSVL 185 (262)
T ss_dssp --------HH------------------------------HHH---CCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEE
T ss_pred --------HH------------------------------hhc---cCCeEEEEecCccchHHHHHHHHHHHHhCCCCEE
Confidence 00 000 0247899999999999999999999999999999
Q ss_pred eEEEcCc
Q 017873 257 NIIINQV 263 (365)
Q Consensus 257 ~vVvN~~ 263 (365)
|+|+|++
T Consensus 186 gvV~N~~ 192 (262)
T 2ph1_A 186 GLVENMS 192 (262)
T ss_dssp EEEETTC
T ss_pred EEEECCC
Confidence 9999998
No 16
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.86 E-value=3.6e-21 Score=183.21 Aligned_cols=177 Identities=19% Similarity=0.195 Sum_probs=100.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccc
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETG 105 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 105 (365)
+.+.|+++ |||||||||+|+|||.+||+.|+||++||+||+.+.+..+.....................+.....+ ..
T Consensus 47 ~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i-~~ 124 (314)
T 3fwy_A 47 GAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFV-FE 124 (314)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHC-EE
T ss_pred CceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHhe-ee
Confidence 34455564 99999999999999999999999999999999988776554332111000000000000000000000 00
Q ss_pred cccCccchhHH--h-hhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhh
Q 017873 106 STEGMDSLFSE--L-ANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM 182 (365)
Q Consensus 106 ~~~~~~~~~~~--~-~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~ 182 (365)
...++..+... . ...+.+......+..+........||||++||||+...+.+.
T Consensus 125 ~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~----------------------- 181 (314)
T 3fwy_A 125 GFNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA----------------------- 181 (314)
T ss_dssp CGGGCEEEECCCCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-----------------------
T ss_pred cCCCeEEEeCCCCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH-----------------------
Confidence 01111100000 0 001112222223333332222236999999999976543321
Q ss_pred HHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC----CCCcCeE
Q 017873 183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EIDTHNI 258 (365)
Q Consensus 183 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~----gi~v~~v 258 (365)
.+ +. ..+.+++||+|+..++..+.++++.++.. ++++.|+
T Consensus 182 -~a---------------------------------l~--aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~Gi 225 (314)
T 3fwy_A 182 -AP---------------------------------LQ--HADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGC 225 (314)
T ss_dssp -GG---------------------------------GG--TCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEE
T ss_pred -hH---------------------------------Hh--hCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 00 11 13589999999999999999998888753 5677899
Q ss_pred EEcCc
Q 017873 259 IINQV 263 (365)
Q Consensus 259 VvN~~ 263 (365)
|+|+.
T Consensus 226 I~n~~ 230 (314)
T 3fwy_A 226 VANRS 230 (314)
T ss_dssp EEESC
T ss_pred EEcCC
Confidence 99988
No 17
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.86 E-value=1.7e-21 Score=179.94 Aligned_cols=55 Identities=33% Similarity=0.475 Sum_probs=48.5
Q ss_pred hcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 23 ~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
..++++.|+|+|+||||||||+|+|||.+||++|+||++||+|++++++.+|+..
T Consensus 2 ~~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~l~~~ 56 (257)
T 1wcv_1 2 LRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVR 56 (257)
T ss_dssp ---CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCC
T ss_pred CCCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHHHHhCCC
Confidence 3455677889999999999999999999999999999999999999999888865
No 18
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.86 E-value=4.5e-21 Score=180.68 Aligned_cols=175 Identities=21% Similarity=0.243 Sum_probs=113.5
Q ss_pred hhHHhhhcCCCeEEEEEe--CCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCC-c--eeec-----
Q 017873 17 GSVRNILEQDSLKWVFVG--GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKT-P--TLVN----- 86 (365)
Q Consensus 17 ~~l~~~~~~~~~~i~~~s--gKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~-~--~~~~----- 86 (365)
..+++++..+++.|+|++ +||||||||+|+|||.+|+++|+||++||+|++++++.+++...+.. + ....
T Consensus 24 ~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~ 103 (298)
T 2oze_A 24 EELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNG 103 (298)
T ss_dssp HHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHT
T ss_pred HHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcC
Confidence 345555555567788888 89999999999999999999999999999999998887775432211 0 0000
Q ss_pred --------CcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHh
Q 017873 87 --------GFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRL 158 (365)
Q Consensus 87 --------~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~ 158 (365)
..+|++++.... .+.. ...+...+........+.++++.++. +||||||||||+.+....
T Consensus 104 ~~~~~~~~~~~~l~vlp~~~----------~~~~-~~~l~~~~~~~~~~~~l~~~l~~l~~-~yD~IiiD~pp~~~~~~~ 171 (298)
T 2oze_A 104 NLASSIVHLTDNLDLIPGTF----------DLML-LPKLTRSWTFENESRLLATLLAPLKS-DYDLIIIDTVPTPSVYTN 171 (298)
T ss_dssp CCGGGCEESSSSEEEECCCG----------GGGG-HHHHTTTSCHHHHHTHHHHHHGGGGG-GCSEEEEEECSSCSHHHH
T ss_pred ChhhhhcccCCCeEEEeCCc----------hHHH-HHHHhhhhccccHHHHHHHHHHHHhc-CCCEEEEECCCCccHHHH
Confidence 001222111100 0000 01111000001112346667776665 799999999998764321
Q ss_pred hhchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchH
Q 017873 159 LQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSL 238 (365)
Q Consensus 159 l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~ 238 (365)
.. + .. .+.+++|+.|+..++
T Consensus 172 ~~-------------------------l-------------------------------~~----aD~viiv~~~~~~s~ 191 (298)
T 2oze_A 172 NA-------------------------I-------------------------------VA----SDYVMIPLQAEEEST 191 (298)
T ss_dssp HH-------------------------H-------------------------------HH----CSEEEEEECGGGCCH
T ss_pred HH-------------------------H-------------------------------HH----CCeEEEEecCcHHHH
Confidence 10 0 01 247899999999999
Q ss_pred HHHHHHHHHHHh------CCCCcCeEEEcCc
Q 017873 239 YETERLVQELTK------FEIDTHNIIINQV 263 (365)
Q Consensus 239 ~et~~~~~~L~~------~gi~v~~vVvN~~ 263 (365)
..+.++++.+.. .++++.|+|+|++
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~ 222 (298)
T 2oze_A 192 NNIQNYISYLIDLQEQFNPGLDMIGFVPYLV 222 (298)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEE
Confidence 999999988876 3788899999999
No 19
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.86 E-value=1.8e-21 Score=180.46 Aligned_cols=189 Identities=19% Similarity=0.184 Sum_probs=107.4
Q ss_pred hhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcC
Q 017873 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS 89 (365)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~ 89 (365)
+-.+....++..|-.++++.|+|+|+||||||||+|+|||.+|| +|+||++||+|+++++..+++........... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~-~~ 87 (267)
T 3k9g_A 10 GTLEAQTQGPGSMDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFT-KF 87 (267)
T ss_dssp ----------------CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTT-TS
T ss_pred cchhhhhcCcccCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcc-cc
Confidence 34556677788888888888999999999999999999999999 99999999999999988887643210000000 00
Q ss_pred Ccee---eecCcccccccccccCccchh-----HHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhc
Q 017873 90 NLYA---MEVDPSVEEETGSTEGMDSLF-----SELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF 161 (365)
Q Consensus 90 ~l~~---~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~l 161 (365)
++.- ...+....+ .....++..+. ......... .....+..+++.++. .||||||||||+.+.....
T Consensus 88 ~l~~~l~~~~~~~~~i-~~~~~~l~~lp~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~-~yD~viiD~pp~~~~~~~~-- 162 (267)
T 3k9g_A 88 NIYEILKENVDIDSTI-INVDNNLDLIPSYLTLHNFSEDKIE-HKDFLLKTSLGTLYY-KYDYIVIDTNPSLDVTLKN-- 162 (267)
T ss_dssp SHHHHHTTSSCGGGGC-EEEETTEEEECCCGGGGGTTTCCCT-TGGGHHHHHHHTTCT-TCSEEEEEECSSCSHHHHH--
T ss_pred cHHHHhcCCCCHHHhh-ccCCCCEEEEeCChHHHHHHHhhhh-hHHHHHHHHHHHhhc-CCCEEEEECcCCccHHHHH--
Confidence 1100 000000000 00001111000 000000000 011246666666665 7999999999976542211
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHH
Q 017873 162 PSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET 241 (365)
Q Consensus 162 p~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et 241 (365)
.+.. .+.+++|+.|+..++..+
T Consensus 163 --------------------------------------------------------~l~~--aD~vivv~~~~~~s~~~~ 184 (267)
T 3k9g_A 163 --------------------------------------------------------ALLC--SDYVIIPMTAEKWAVESL 184 (267)
T ss_dssp --------------------------------------------------------HHTT--CSEEEEEEESCTTHHHHH
T ss_pred --------------------------------------------------------HHHH--CCeEEEEeCCChHHHHHH
Confidence 0111 358999999999999999
Q ss_pred HHHHHHHHhCCCCc-CeEEEcCc
Q 017873 242 ERLVQELTKFEIDT-HNIIINQV 263 (365)
Q Consensus 242 ~~~~~~L~~~gi~v-~~vVvN~~ 263 (365)
.++++.++..+..+ .++|+|++
T Consensus 185 ~~~~~~l~~~~~~~~~~vv~N~~ 207 (267)
T 3k9g_A 185 DLFNFFVRKLNLFLPIFLIITRF 207 (267)
T ss_dssp HHHHHHHHTTTCCCCEEEEEEEE
T ss_pred HHHHHHHHHHhccCCEEEEEecc
Confidence 99999999886532 36999999
No 20
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.86 E-value=1.5e-21 Score=178.22 Aligned_cols=168 Identities=16% Similarity=0.239 Sum_probs=109.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccc-
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE- 102 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~- 102 (365)
+++.|+|+|+||||||||+|+|||.+||++ |+||++||+|++ ++++.+|+..... ... ..+...........
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~-~~l----~~~l~~~~~~~~~~~ 77 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHS-QDL----ADISNASDRLDKSLL 77 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCS-CCH----HHHHHTGGGCCHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCC-CCH----HHHHhhHhhhhHHHH
Confidence 466788999999999999999999999998 999999999999 9999998522110 000 00000000000000
Q ss_pred -c--cccccCccchhHHhhhcCCCHHH-----HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHH
Q 017873 103 -E--TGSTEGMDSLFSELANAIPGIDE-----AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMS 174 (365)
Q Consensus 103 -~--~~~~~~~~~~~~~~~~~~pg~~~-----~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~ 174 (365)
. .....++..+. ..+.... ...+.++++.+++ .||||||||||+.+.....
T Consensus 78 ~~~~~~~~~~l~~l~-----~~~~~~~~~~~~~~~l~~~l~~l~~-~yD~viiD~p~~~~~~~~~--------------- 136 (245)
T 3ea0_A 78 DTMVQHISPSLDLIP-----SPATFEKIVNIEPERVSDLIHIAAS-FYDYIIVDFGASIDHVGVW--------------- 136 (245)
T ss_dssp HHHSEEEETTEEEEC-----CCSSHHHHHHCCHHHHHHHHHHHHH-HCSEEEEEEESSCCTTHHH---------------
T ss_pred HHHhEecCCCeEEEc-----CCCChHhhhcCCHHHHHHHHHHHHh-hCCEEEEeCCCCCchHHHH---------------
Confidence 0 00001111000 0011110 1256777777776 6999999999976532111
Q ss_pred HHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCC--
Q 017873 175 LKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE-- 252 (365)
Q Consensus 175 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~g-- 252 (365)
.+. ..+.+++|+.|+..++..+.++++.++..+
T Consensus 137 -------------------------------------------~l~--~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~ 171 (245)
T 3ea0_A 137 -------------------------------------------VLE--HLDELCIVTTPSLQSLRRAGQLLKLCKEFEKP 171 (245)
T ss_dssp -------------------------------------------HGG--GCSEEEEEECSSHHHHHHHHHHHHHHHTCSSC
T ss_pred -------------------------------------------HHH--HCCEEEEEecCcHHHHHHHHHHHHHHHHhCCC
Confidence 011 135789999999999999999999999888
Q ss_pred CCcCeEEEcCcc
Q 017873 253 IDTHNIIINQVL 264 (365)
Q Consensus 253 i~v~~vVvN~~~ 264 (365)
....++|+|++.
T Consensus 172 ~~~~~~v~N~~~ 183 (245)
T 3ea0_A 172 ISRIEIILNRAD 183 (245)
T ss_dssp CSCEEEEEESTT
T ss_pred ccceEEEEecCC
Confidence 566899999993
No 21
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.85 E-value=8.8e-21 Score=168.35 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=102.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 107 (365)
+.|+|+|+||||||||+|+|||..++++|+||++||+||+++++.+++... .++.+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~----------~~~~~~~~----------- 60 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGK----------AAFDVFTA----------- 60 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSC----------CSSEEEEC-----------
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCC----------CCCcEEec-----------
Confidence 567799999999999999999999999999999999999999999987432 22222221
Q ss_pred cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHH
Q 017873 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT 187 (365)
Q Consensus 108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~ 187 (365)
+. ..+..+++.+++ +||||||||||+.+..... .+
T Consensus 61 --------------~~----~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~-------------------------~l- 95 (206)
T 4dzz_A 61 --------------AS----EKDVYGIRKDLA-DYDFAIVDGAGSLSVITSA-------------------------AV- 95 (206)
T ss_dssp --------------CS----HHHHHTHHHHTT-TSSEEEEECCSSSSHHHHH-------------------------HH-
T ss_pred --------------Cc----HHHHHHHHHhcC-CCCEEEEECCCCCCHHHHH-------------------------HH-
Confidence 01 245566666666 6999999999976432111 00
Q ss_pred hhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCC-----CCcCeEEEcC
Q 017873 188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE-----IDTHNIIINQ 262 (365)
Q Consensus 188 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~g-----i~v~~vVvN~ 262 (365)
.. .+.+++|+.|+..+ ..+.++++.++..+ +++ ++|+|+
T Consensus 96 ------------------------------~~----ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~vv~N~ 139 (206)
T 4dzz_A 96 ------------------------------MV----SDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEA-RFLITR 139 (206)
T ss_dssp ------------------------------HH----CSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEE-EEEECS
T ss_pred ------------------------------HH----CCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcE-EEEEec
Confidence 01 24789999999999 99999999998764 566 999999
Q ss_pred c
Q 017873 263 V 263 (365)
Q Consensus 263 ~ 263 (365)
+
T Consensus 140 ~ 140 (206)
T 4dzz_A 140 K 140 (206)
T ss_dssp B
T ss_pred c
Confidence 9
No 22
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.85 E-value=1.7e-20 Score=173.32 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=109.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcccCCCceeecCcCCceeeecCcccccccc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETG 105 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 105 (365)
++.|+|+|+||||||||+|+|||.+|+++|+||++||+|+ +++++.+|+..... .. +..+.....+....+ ..
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~-~~----l~~~l~~~~~~~~~i-~~ 75 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLP-VT----LQNVLAGEARIDEAI-YV 75 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCC-CC----HHHHHTTSSCGGGGC-EE
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCC-CC----HHHHHcCCCcHHHhh-ee
Confidence 3578899999999999999999999999999999999998 58999999875321 00 001100001111111 00
Q ss_pred cccCccchhHHhhhcCCCHHH---HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhh
Q 017873 106 STEGMDSLFSELANAIPGIDE---AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM 182 (365)
Q Consensus 106 ~~~~~~~~~~~~~~~~pg~~~---~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~ 182 (365)
...++..+. ........+ ...+..+++.++. +||||||||||+.+.....
T Consensus 76 ~~~~l~~lp---~~~~~~~~~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~----------------------- 128 (263)
T 1hyq_A 76 GPGGVKVVP---AGVSLEGLRKANPEKLEDVLTQIME-STDILLLDAPAGLERSAVI----------------------- 128 (263)
T ss_dssp CGGGCEEEE---CCSCHHHHHHHCHHHHHHHHHHHHH-TCSEEEEECCSSSSHHHHH-----------------------
T ss_pred CCCCeEEEc---CCCCcChhhccChHHHHHHHHHHHh-hCCEEEEeCCCCCChHHHH-----------------------
Confidence 001111110 000000000 2345666777776 7999999999976521111
Q ss_pred HHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcC
Q 017873 183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQ 262 (365)
Q Consensus 183 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~ 262 (365)
.+ .. .+.+++|+.|+..++..+.++++.++..++++.++|+|+
T Consensus 129 --~~-------------------------------~~----ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~ 171 (263)
T 1hyq_A 129 --AI-------------------------------AA----AQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNR 171 (263)
T ss_dssp --HH-------------------------------HH----SSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred --HH-------------------------------HH----CCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEcc
Confidence 00 01 247899999999999999999999998899999999999
Q ss_pred c
Q 017873 263 V 263 (365)
Q Consensus 263 ~ 263 (365)
+
T Consensus 172 ~ 172 (263)
T 1hyq_A 172 I 172 (263)
T ss_dssp E
T ss_pred C
Confidence 9
No 23
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.84 E-value=2.1e-20 Score=181.39 Aligned_cols=50 Identities=32% Similarity=0.395 Sum_probs=45.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~ 76 (365)
++.|+|+|+||||||||+|+|||.+||+.|+|||+||+|++++++..|..
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~ 50 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLT 50 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSC
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcC
Confidence 35788999999999999999999999999999999999999998887743
No 24
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.84 E-value=2.2e-20 Score=169.70 Aligned_cols=168 Identities=20% Similarity=0.165 Sum_probs=109.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCcccccccc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETG 105 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 105 (365)
++.|+|+|+||||||||+|+|||.+|+++|+||++||+|++ ++++.+|+.+... .. +..+.....+....+ ..
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~-~~----l~~~l~~~~~~~~~i-~~ 75 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPD-VT----LHDVLAGEANVEDAI-YM 75 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCS-SC----HHHHHTTSSCGGGGC-EE
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCC-CC----HHHHhcCCCCHHHHh-hc
Confidence 35788999999999999999999999999999999999985 8999998865321 00 000100001111111 00
Q ss_pred cc-cCccchhHHhhhcCCCHHH---HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhh
Q 017873 106 ST-EGMDSLFSELANAIPGIDE---AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181 (365)
Q Consensus 106 ~~-~~~~~~~~~~~~~~pg~~~---~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~ 181 (365)
.. .++..+. ........+ ...+.++++.++. +||||||||||+.+.....
T Consensus 76 ~~~~~l~~lp---~~~~~~~~~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~---------------------- 129 (237)
T 1g3q_A 76 TQFDNVYVLP---GAVDWEHVLKADPRKLPEVIKSLKD-KFDFILIDCPAGLQLDAMS---------------------- 129 (237)
T ss_dssp CSSTTEEEEC---CCCSHHHHHHCCGGGHHHHHHTTGG-GCSEEEEECCSSSSHHHHH----------------------
T ss_pred CCCCCEEEEe---CCCccchhhhcCHHHHHHHHHHHHh-cCCEEEEECCCCcCHHHHH----------------------
Confidence 00 1111000 000000000 1235566666665 7999999999976521100
Q ss_pred hHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEc
Q 017873 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN 261 (365)
Q Consensus 182 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN 261 (365)
.+. ..+.+++|+.|+..++..+.++++.+++.|+++.++|+|
T Consensus 130 ------------------------------------~~~--~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N 171 (237)
T 1g3q_A 130 ------------------------------------AML--SGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLN 171 (237)
T ss_dssp ------------------------------------HHT--TCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred ------------------------------------HHH--HCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEe
Confidence 011 135799999999999999999999999999999999999
Q ss_pred Ccc
Q 017873 262 QVL 264 (365)
Q Consensus 262 ~~~ 264 (365)
++.
T Consensus 172 ~~~ 174 (237)
T 1g3q_A 172 RYG 174 (237)
T ss_dssp EET
T ss_pred cCC
Confidence 993
No 25
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.84 E-value=5e-20 Score=180.86 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=47.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCCCChhhHhhcc
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
.++.|+|+|+||||||||+|+|||.+||. .|+|||+||+|++++++.+|+..
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~ 164 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHK 164 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCc
Confidence 45678899999999999999999999994 79999999999999999999865
No 26
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.83 E-value=6.8e-20 Score=168.58 Aligned_cols=172 Identities=20% Similarity=0.184 Sum_probs=108.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcccCCCceeecCcCCceeeecCccccc-cc
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET 104 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~ 104 (365)
++.|+|+|+||||||||+|+|||.+|+++|+||++||+|+ +++++.+||.+....... ..+.....+....+ ..
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l----~~~l~~~~~~~~~~~~~ 77 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDF----VNVIQGDATLNQALIKD 77 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCH----HHHHTTSSCHHHHCEEC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCH----HHHhcCCCChHHheecc
Confidence 3567899999999999999999999999999999999998 699999998753211000 00000000000000 00
Q ss_pred ccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHH
Q 017873 105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMIN 184 (365)
Q Consensus 105 ~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~ 184 (365)
....++..+...... .........+.++++.+++..||||||||||+.+.....
T Consensus 78 ~~~~~l~~lp~~~~~-~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~~~~~------------------------- 131 (260)
T 3q9l_A 78 KRTENLYILPASQTR-DKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALM------------------------- 131 (260)
T ss_dssp SSSTTEEEECCCSCC-CTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSHHHHH-------------------------
T ss_pred CCCCCEEEecCCCcc-chhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCHHHHH-------------------------
Confidence 000111100000000 000011124667777777635999999999976532111
Q ss_pred HHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCC--------CcC
Q 017873 185 QMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI--------DTH 256 (365)
Q Consensus 185 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi--------~v~ 256 (365)
.+. ..+.+++|+.|+..++..+.++++.+...+. ...
T Consensus 132 ---------------------------------~l~--~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~ 176 (260)
T 3q9l_A 132 ---------------------------------ALY--FADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKE 176 (260)
T ss_dssp ---------------------------------HHH--TCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEE
T ss_pred ---------------------------------HHH--hCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcce
Confidence 000 1357899999999999999999999997763 467
Q ss_pred eEEEcCc
Q 017873 257 NIIINQV 263 (365)
Q Consensus 257 ~vVvN~~ 263 (365)
++|+|++
T Consensus 177 ~~v~N~~ 183 (260)
T 3q9l_A 177 HLLLTRY 183 (260)
T ss_dssp EEEEEEE
T ss_pred EEEEecC
Confidence 9999999
No 27
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.82 E-value=1.7e-19 Score=169.22 Aligned_cols=48 Identities=31% Similarity=0.486 Sum_probs=42.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~ 76 (365)
+.|+| |+||||||||+|+|||.+||++|+||++||+|++.+...++..
T Consensus 3 kvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~ 50 (289)
T 2afh_E 3 RQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILH 50 (289)
T ss_dssp EEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHC
T ss_pred eEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcC
Confidence 44556 7899999999999999999999999999999999887777653
No 28
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.81 E-value=2.7e-19 Score=165.83 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=41.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~ 75 (365)
+.|+| |+||||||||+|+|||.+||++|+||++||+|++.+...++.
T Consensus 2 ~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~ 48 (269)
T 1cp2_A 2 RQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLL 48 (269)
T ss_dssp EEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHH
T ss_pred cEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhc
Confidence 44556 799999999999999999999999999999999988776665
No 29
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.81 E-value=1.1e-19 Score=178.85 Aligned_cols=54 Identities=24% Similarity=0.301 Sum_probs=38.2
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHH------HCCCCEEEEeCCCCCChhhHhhccc
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLA------EVRPSVLIISTDPAHNLSDAFQQRF 78 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la------~~G~rVLLiD~D~~~~l~~~~~~~~ 78 (365)
.+++.|+|+|+||||||||+|+|||.+|| +.|+||++||+|++++++.+|+...
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~ 168 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTH 168 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCc
Confidence 35667889999999999999999999999 6899999999999999998888653
No 30
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.78 E-value=7.2e-19 Score=157.68 Aligned_cols=128 Identities=22% Similarity=0.204 Sum_probs=96.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 107 (365)
+.|+|+|+||||||||+|+|||.+|+++| ||++||+|++.+++.+++. .. ++. .+.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~--~~-------l~~-~vi------------- 56 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR--GS-------LPF-KVV------------- 56 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH--SC-------CSS-EEE-------------
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC--CC-------CCc-cee-------------
Confidence 46889999999999999999999999999 9999999999999998885 10 010 000
Q ss_pred cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCC-hhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHH
Q 017873 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPT-GHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186 (365)
Q Consensus 108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~-~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~ 186 (365)
++. .++.+.. .||||||||||+ .+.....
T Consensus 57 --------------~~~--------~l~~l~~-~yD~viiD~p~~~~~~~~~~--------------------------- 86 (209)
T 3cwq_A 57 --------------DER--------QAAKYAP-KYQNIVIDTQARPEDEDLEA--------------------------- 86 (209)
T ss_dssp --------------EGG--------GHHHHGG-GCSEEEEEEECCCSSSHHHH---------------------------
T ss_pred --------------CHH--------HHHHhhh-cCCEEEEeCCCCcCcHHHHH---------------------------
Confidence 000 2333444 699999999997 4421100
Q ss_pred HhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC-CCCcCeEEEcCc
Q 017873 187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-EIDTHNIIINQV 263 (365)
Q Consensus 187 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~-gi~v~~vVvN~~ 263 (365)
.+. ..+.+++|+.|+..++..+.++++.++.. +.+ .++|+|++
T Consensus 87 -------------------------------~l~--~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~ 130 (209)
T 3cwq_A 87 -------------------------------LAD--GCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTII 130 (209)
T ss_dssp -------------------------------HHH--TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSB
T ss_pred -------------------------------HHH--HCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEec
Confidence 000 12478999999999999999999999985 666 68999999
No 31
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.77 E-value=1.8e-18 Score=168.43 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=49.0
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhccc
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF 78 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~ 78 (365)
++++.|+|+|+||||||||+|+|||.+||++|+||++||+|+.++++.+||.+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~ 194 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEG 194 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCC
Confidence 356678899999999999999999999999999999999998899999998653
No 32
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.76 E-value=6.7e-19 Score=165.26 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=46.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQR 77 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~ 77 (365)
+.|+|+|+||||||||+|+|||.+|+++|+||++||+|+ +++++.+|+..
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~ 55 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENR 55 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCC
Confidence 467799999999999999999999999999999999999 99999999865
No 33
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.72 E-value=1.2e-16 Score=143.72 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=109.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcc-cccc-cc
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPS-VEEE-TG 105 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-~~~~-~~ 105 (365)
+.|+|+|+||||||||+|+|||.+|+++|+||+++| |+.+-.... +.+........+.... ..... .... +.
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d--p~~~~~~~~--~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~ 75 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK--PVASGSEKT--PEGLRNSDALALQRNS--SLQLDYATVNPYT 75 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESCBCC--TTSCBCHHHHHHHHTC--SSCCCHHHHCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--ceecCCccC--CCCcChHHHHHHHHHh--CCCCChhhcccEE
Confidence 568899999999999999999999999999999975 432111000 0000000000000000 00000 0000 00
Q ss_pred cccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhH-HH-hhhchHHHHHHHHHHHHHHHhhhhhH
Q 017873 106 STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHT-LR-LLQFPSTLEKGLDKMMSLKNKFGGMI 183 (365)
Q Consensus 106 ~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~-l~-~l~lp~~l~~~l~~~~~~~~~~~~~~ 183 (365)
-...............+. ....+.+.++.+++ +||||||||||+.+. +. .+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~l~~-~yD~viID~p~~l~~p~~~~~~~~--------------------- 131 (224)
T 1byi_A 76 FAEPTSPHIISAQEGRPI--ESLVMSAGLRALEQ-QADWVLVEGAGGWFTPLSDTFTFA--------------------- 131 (224)
T ss_dssp ESSCSCHHHHHHHHTCCC--CHHHHHHHHHHHHT-TCSEEEEECSSSTTCEEETTEEHH---------------------
T ss_pred eCCCCCHHHHHHHcCCCC--CHHHHHHHHHHHHH-hCCEEEEEcCCccccCCCcchhHH---------------------
Confidence 000000000000000011 11345566666666 799999999997652 10 00000
Q ss_pred HHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 184 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
.+. ..+. ..+++|+.++..++.++.+.++.++..++++.|+|+|++
T Consensus 132 -~l~-----------------------------~~~~----~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~ 177 (224)
T 1byi_A 132 -DWV-----------------------------TQEQ----LPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDV 177 (224)
T ss_dssp -HHH-----------------------------HHHT----CCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred -HHH-----------------------------HHhC----CCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 000 0111 247889999999999999999999999999999999999
Q ss_pred cCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Q 017873 264 LYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLP 305 (365)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~ 305 (365)
.+... .+...++.+.+.++...+..+|...
T Consensus 178 -~~~~~-----------~~~~~~~~l~~~~~~~vl~~Ip~~~ 207 (224)
T 1byi_A 178 -TPPGK-----------RHAEYMTTLTRMIPAPLLGEIPWLA 207 (224)
T ss_dssp -SSCCT-----------THHHHHHHHHHHSSSCEEEEECCCT
T ss_pred -CCchh-----------hHHHHHHHHHHHcCCCEEEECCCCc
Confidence 33210 1233455566656432344577765
No 34
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.52 E-value=1.4e-13 Score=136.20 Aligned_cols=43 Identities=33% Similarity=0.404 Sum_probs=37.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCCCCh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNL 70 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~~~l 70 (365)
.+++.+.|+||+||||++++||.+++++ |+||++||+|++.+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~ 143 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA 143 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 4555555899999999999999999998 999999999998553
No 35
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.42 E-value=2.8e-12 Score=120.91 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=38.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~ 71 (365)
..++.+.|++|+||||++.++|..++..|++|+++|+|++.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a 141 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAA 141 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHH
Confidence 44666669999999999999999999999999999999886643
No 36
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.38 E-value=1.9e-11 Score=116.35 Aligned_cols=42 Identities=31% Similarity=0.373 Sum_probs=35.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
..++.+.|.+|+||||++++||..++..|++|+++|+|+...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~ 146 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA 146 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 344544467999999999999999999999999999998654
No 37
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.35 E-value=9.8e-11 Score=107.29 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=39.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~ 71 (365)
...+++++|||||||||++.++|.+++ .|+||++||+|++.+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKEL 56 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcccc
Confidence 346789999999999999999999999 99999999999986643
No 38
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.33 E-value=8.1e-12 Score=117.61 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=37.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~ 71 (365)
+..++++ |++|+||||++.++|..++..|.+|+++|+|++.+..
T Consensus 98 ~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~ 141 (295)
T 1ls1_A 98 RNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 141 (295)
T ss_dssp SEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH
Confidence 3344455 9999999999999999999999999999999886544
No 39
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.32 E-value=9.9e-12 Score=122.70 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=45.0
Q ss_pred hhcchhhHHhhhcC--------CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 12 LEIPEGSVRNILEQ--------DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 12 ~~~~~~~l~~~~~~--------~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
.+.++..|..++.. ....++++.|.+|+||||++++||.+++++|+||+++++|+...
T Consensus 76 ~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 76 IKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp HHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred HHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 34444555555442 23567777888999999999999999999999999999998744
No 40
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.31 E-value=2e-11 Score=120.22 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=37.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~ 71 (365)
..++.+.|++|+||||++.+||.+++..|++|+++|+|++.+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa 141 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 141 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh
Confidence 34555559999999999999999999999999999999876544
No 41
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.27 E-value=3.9e-10 Score=103.55 Aligned_cols=222 Identities=13% Similarity=0.102 Sum_probs=118.8
Q ss_pred cchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe-----CCCCCChhhHhhcccCCCceeecCc
Q 017873 14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-----TDPAHNLSDAFQQRFTKTPTLVNGF 88 (365)
Q Consensus 14 ~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD-----~D~~~~l~~~~~~~~~~~~~~~~~~ 88 (365)
.+...|+.+..++++.|.+++...|+|||+++++|+.+|+++|+||..+= +.+...-..++....+..+.
T Consensus 13 ~~~~~~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~----- 87 (251)
T 3fgn_A 13 GLQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQL----- 87 (251)
T ss_dssp ---------CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEE-----
T ss_pred hhhHHHHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCC-----
Confidence 45667888887776677788889999999999999999999999999874 21111111111111111000
Q ss_pred CCceeeecCcccccccccccCccchhHHhhhcC--CCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHH
Q 017873 89 SNLYAMEVDPSVEEETGSTEGMDSLFSELANAI--PGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLE 166 (365)
Q Consensus 89 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~ 166 (365)
.+.+... .............. ... ..+.+.++.+.+ +||+||||++++...- + .+.
T Consensus 88 ~~~~~~~------------~p~sP~~aa~~~~~~~~~~---~~i~~~~~~l~~-~~D~vlIEGagGl~~p--l--~~~-- 145 (251)
T 3fgn_A 88 AGLARYP------------QPMAPAAAAEHAGMALPAR---DQIVRLIADLDR-PGRLTLVEGAGGLLVE--L--AEP-- 145 (251)
T ss_dssp EEEEECS------------SSSCHHHHHHHTTCCCCCH---HHHHHHHHTTCC-TTCEEEEECSSSTTCE--E--ETT--
T ss_pred CCCeeEC------------CCCChHHHHHHcCCCCCCH---HHHHHHHHHHHh-cCCEEEEECCCCCcCC--c--Ccc--
Confidence 0111000 00110000000011 111 123333333344 7999999999865310 0 000
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHH
Q 017873 167 KGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246 (365)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~ 246 (365)
+ .. ...+...+. ..+++|+.++..++..+...++
T Consensus 146 ------------------------~----~~--------------~adla~~l~----~pVILV~~~~~g~i~~~~lt~~ 179 (251)
T 3fgn_A 146 ------------------------G----VT--------------LRDVAVDVA----AAALVVVTADLGTLNHTKLTLE 179 (251)
T ss_dssp ------------------------T----EE--------------HHHHHHHTT----CEEEEEECSSTTHHHHHHHHHH
T ss_pred ------------------------c----ch--------------HHHHHHHcC----CCEEEEEcCCCccHHHHHHHHH
Confidence 0 00 000111233 3689999999999999999999
Q ss_pred HHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEE-EecCCCCCCCCHHHHHHHHHhhcC
Q 017873 247 ELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHIT-KLPLLPEEVTGIEALKAFSQHFVT 323 (365)
Q Consensus 247 ~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~-~vp~~~~e~~g~~~L~~l~~~l~~ 323 (365)
.+...|+++.|+|+|++. .+.. . .+...++.|.+. +|++ .+|..... ...+.+...+...+.
T Consensus 180 ~l~~~g~~i~GvIlN~v~-~~~~--~--------~~~~~~~~le~~---vpvLG~iP~~~~~-l~~~~~~~~~~~~~~ 242 (251)
T 3fgn_A 180 ALAAQQVSCAGLVIGSWP-DPPG--L--------VAASNRSALARI---AMVRAALPAGAAS-LDAGDFAAMSAAAFD 242 (251)
T ss_dssp HHHHTTCCEEEEEEEEEC-SSCC--H--------HHHHHHHHHHHH---SCEEEEEETTGGG-CCHHHHHHHHHHHSC
T ss_pred HHHhCCCCEEEEEEECCC-Cchh--h--------hhhhHHHHHHHh---CCEEEEeeCCCCc-CCHHHHHHHHhcccc
Confidence 999999999999999993 2211 1 112223444443 5554 57887544 456777777776553
No 42
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.21 E-value=1.4e-10 Score=116.48 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=37.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~ 71 (365)
.+++.+.|.+||||||++.+||.++++.|+||++||+|+..+..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa 144 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGA 144 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhH
Confidence 34555558899999999999999999999999999999875543
No 43
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.15 E-value=9.4e-10 Score=99.63 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=48.3
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEec
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLP 302 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp 302 (365)
.+++|+.+...++..+...++.+...|+++.|+|+|++ .++.. .+...++.+.+.++...+-.+|
T Consensus 142 pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~-~~~~~-----------~~~~~~~~l~~~~g~pvLG~iP 206 (228)
T 3of5_A 142 PVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCN-DSNIK-----------YIDEQINTIEELSGYKCSAKIS 206 (228)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEEC-CTTCS-----------CHHHHHHHHHHHHSCCCSEEEE
T ss_pred CEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECc-CCcch-----------hhHHHHHHHHHhhCCCEEEECC
Confidence 47999999999999999999999999999999999999 33211 1122355566555444455677
No 44
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=99.13 E-value=2.7e-10 Score=102.51 Aligned_cols=49 Identities=18% Similarity=0.100 Sum_probs=43.9
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhH
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA 73 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~ 73 (365)
++++..+|+++||||||||++.++|..++++|++|+++|+|++++...+
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~ 51 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETE 51 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHH
Confidence 3566778999999999999999999999999999999999998877643
No 45
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.12 E-value=4.6e-10 Score=110.72 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=37.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
..++++.|++|+||||++++||.+++..|++|+++|+|+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 56777789999999999999999999999999999999753
No 46
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.08 E-value=1.9e-10 Score=113.67 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=36.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
.++.+.|.+|+||||++++||..++++|+||+++|+|++.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRP 140 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCc
Confidence 45555678999999999999999999999999999998754
No 47
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.08 E-value=2.6e-09 Score=100.90 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=35.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
..++.+.|.+|+||||++.++|..++..|.+|+++|+|...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 34555556799999999999999999999999999999764
No 48
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.04 E-value=6.6e-09 Score=94.83 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=35.9
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|+.++..++..+...++.|...|++ .|+|+|++
T Consensus 162 ~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v 199 (242)
T 3qxc_A 162 AKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLK 199 (242)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCC
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCC
Confidence 368999999999999999999999999999 99999999
No 49
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.00 E-value=7.1e-09 Score=97.46 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=34.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH 68 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~~ 68 (365)
.++.+.|.+|+||||++.+||..++. .|++|+++|+|+..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 34544567999999999999999995 89999999999864
No 50
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.82 E-value=1.2e-08 Score=98.19 Aligned_cols=44 Identities=30% Similarity=0.397 Sum_probs=35.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l 70 (365)
...++.++|++|+||||++.+|+..++..|+||+++|+||+.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~ 121 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR 121 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc
Confidence 44566778999999999999999999999999999999988654
No 51
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.27 E-value=1.6e-05 Score=79.22 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
.++.+-|.+|+||||+...||..+...|.+|++.+.|...
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 4666668899999999999999999888999999999754
No 52
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.16 E-value=1.4e-05 Score=70.23 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.|++++|+| .||||.|..+|..++.+|+||+++-+...
T Consensus 30 ~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~Kg 67 (196)
T 1g5t_A 30 IIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIKG 67 (196)
T ss_dssp CEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred eEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 577888888 99999999999999999999999998874
No 53
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.09 E-value=1.4e-05 Score=76.39 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=35.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l 70 (365)
..++.+.|++|+||||+..+++..++..|.+|.+++.|++.+.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~ 98 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 98 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence 3455556799999999999999999999999999999997543
No 54
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.04 E-value=1.5e-05 Score=76.60 Aligned_cols=53 Identities=19% Similarity=0.061 Sum_probs=43.1
Q ss_pred hhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 16 EGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 16 ~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
.+.|+.++. ++ ...++.+.|++|+||||+|.++|..++..|.+|++||++...
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~ 103 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 103 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 345888886 21 224777889999999999999999999999999999997543
No 55
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=97.92 E-value=1.5e-05 Score=78.36 Aligned_cols=52 Identities=25% Similarity=0.174 Sum_probs=46.1
Q ss_pred CCeEEEEEeCCC---CCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccC
Q 017873 26 DSLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT 79 (365)
Q Consensus 26 ~~~~i~~~sgKG---GvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~ 79 (365)
.++.|+++|..+ |+||||+|+|||.+|++.|+||+++ =.+++++.+||.+.+
T Consensus 56 ~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi--LR~Psl~~~FGikgg 110 (557)
T 3pzx_A 56 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC--LREPSLGPSFGIKGG 110 (557)
T ss_dssp CCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE--ECCCCSHHHHHTCCC
T ss_pred CCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE--eCCCCccccCCCCCC
Confidence 456788999999 9999999999999999999999999 455899999998743
No 56
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.90 E-value=0.00017 Score=68.42 Aligned_cols=41 Identities=29% Similarity=0.249 Sum_probs=36.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
...++.+.|.+|+||||+...+|..+...|.+|++++.|..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 34677777889999999999999999999999999999965
No 57
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.88 E-value=6.7e-05 Score=72.32 Aligned_cols=53 Identities=17% Similarity=0.056 Sum_probs=42.8
Q ss_pred hhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 16 EGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 16 ~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
.+.|+.++. ++ ...++.+.|.+|+||||++.++|..++..|.+|++||++...
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 456888886 21 123666679999999999999999999999999999999653
No 58
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.78 E-value=4.1e-05 Score=67.33 Aligned_cols=53 Identities=19% Similarity=0.096 Sum_probs=40.8
Q ss_pred hhhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873 16 EGSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (365)
Q Consensus 16 ~~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~ 71 (365)
.+.|+.++.+ ..-.++.+.|++|+||||++.++|. ..|.+|+++|++.+.+..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHH
Confidence 3467777752 2234788889999999999999998 568899999998754433
No 59
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.68 E-value=0.0014 Score=61.42 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=34.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.++.+.|.+|+||||+...+|..+...|.+|++.+.|..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 355555899999999999999999988899999999965
No 60
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.62 E-value=0.00033 Score=62.50 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=41.9
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.++ .-.++.+.|.+|+||||++.++|..++..|.+|++++++..
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 34577776532 22467778899999999999999999999999999999864
No 61
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.61 E-value=0.00018 Score=68.87 Aligned_cols=52 Identities=17% Similarity=0.041 Sum_probs=42.7
Q ss_pred hhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.++. ++ .-.++.+.|.+|+||||++.++|..++..|.+|+++|++..
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 446888886 32 22467777999999999999999999999999999999854
No 62
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=97.57 E-value=0.0016 Score=62.03 Aligned_cols=37 Identities=16% Similarity=0.045 Sum_probs=32.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
.+++.+++---.|||||++..|..++.++|.++..+-
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~ 188 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLA 188 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEe
Confidence 4567777778889999999999999999999999854
No 63
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.54 E-value=0.0049 Score=65.52 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=35.2
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
-+++|+.....++..+.-.++.+...|+++.|||+|+.
T Consensus 233 PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~ 270 (831)
T 4a0g_A 233 PGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDH 270 (831)
T ss_dssp CEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECC
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 47999999888999999999999999999999999988
No 64
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.48 E-value=0.00046 Score=64.98 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=41.9
Q ss_pred hhhHHhhhc----CC-CeEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCCCCCC
Q 017873 16 EGSVRNILE----QD-SLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAHN 69 (365)
Q Consensus 16 ~~~l~~~~~----~~-~~~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D~~~~ 69 (365)
.+.|+.++. ++ .+-++.+.|..|+||||++..++..+++. |.+|+.||+.....
T Consensus 11 i~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 11 IPMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp CHHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC
T ss_pred CHHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh
Confidence 346777776 32 11257788899999999999999999876 88999999986543
No 65
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.47 E-value=0.00072 Score=64.78 Aligned_cols=56 Identities=14% Similarity=0.014 Sum_probs=44.8
Q ss_pred cchhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 14 IPEGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 14 ~~~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
+=.+.|+.++. ++ .-.++.+.|..|+||||++.++|..++..|.+|+.||+.....
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD 102 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 33456888887 32 1247777788999999999999999999999999999986544
No 66
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.45 E-value=0.00013 Score=64.48 Aligned_cols=52 Identities=21% Similarity=0.120 Sum_probs=37.1
Q ss_pred hhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 16 EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 16 ~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
.+.++.+........+++.|.+||||||+..+++..+... +++..|+.|+..
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~ 77 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIA 77 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCC
Confidence 3445555443333444444889999999999999887654 789999999863
No 67
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.37 E-value=0.0069 Score=58.02 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=35.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
..++.+-|.+|+||||+...+|..+...+.+|++.+.|...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 35666778999999999999999999888999999999653
No 68
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.30 E-value=0.0017 Score=61.82 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=41.6
Q ss_pred hhhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ....++.+.|..|+||||++.++|...+. .|.+|+.||++..
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3458888863 23357888899999999999999998654 5789999999864
No 69
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.30 E-value=0.00093 Score=63.01 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=41.1
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~ 67 (365)
.+.|+.++.++ ...++.+.|.+|+||||++.++|...+.. |.+|+.||++..
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 35688887532 22477788999999999999999987655 789999999864
No 70
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.29 E-value=0.00033 Score=59.96 Aligned_cols=41 Identities=17% Similarity=-0.039 Sum_probs=35.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.++.++|..|+||||++..++..|..+|++|.+|..|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 35567777788999999999999999999999999999975
No 71
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.23 E-value=0.00034 Score=60.12 Aligned_cols=39 Identities=31% Similarity=0.308 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
...++++.|..|+||||++..||..+...|.+|.++|.|
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 345777889999999999999999999999999999977
No 72
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.00073 Score=60.27 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=40.9
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.++ .-.++++.|.+|+|||+++.++|...+ +.|.+|++++++..
T Consensus 16 i~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp CTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred cHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 34678888642 224778889999999999999998755 56899999999854
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.16 E-value=0.01 Score=55.47 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=35.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
.++.+-|.+|+||||+...+|..+...+.+|++.+.|...
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 4666778999999999999999999888999999999653
No 74
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.15 E-value=0.00097 Score=59.29 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=39.6
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+. .-.++.+.|.+|+||||++..+|...+. .+.+|+.++++..
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence 45688888542 2247777899999999999999986543 3678999999864
No 75
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.05 E-value=0.00044 Score=60.76 Aligned_cols=50 Identities=18% Similarity=0.063 Sum_probs=37.7
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
++..........+++.|.+|+||||+..+|+..+... ++|.+++.|+..+
T Consensus 21 ~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~ 70 (221)
T 2wsm_A 21 NREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK 70 (221)
T ss_dssp HHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH
T ss_pred HHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc
Confidence 3334433344566666899999999999999987655 8899999998643
No 76
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.99 E-value=0.0011 Score=75.68 Aligned_cols=56 Identities=18% Similarity=0.069 Sum_probs=46.0
Q ss_pred hhcchhhHHhhhc-C--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 12 LEIPEGSVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 12 ~~~~~~~l~~~~~-~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+.+-.+.|+.++. + ...+++.+.|..|+|||++|.++|...+++|.+|+.+|++..
T Consensus 1408 isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1408 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred ccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 3344556888987 3 134578888999999999999999999999999999999854
No 77
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.97 E-value=0.0036 Score=70.76 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=71.7
Q ss_pred hhhHHhhhcCCCe---EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC--hhhHhhcccCCCceeecCcCC
Q 017873 16 EGSVRNILEQDSL---KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN--LSDAFQQRFTKTPTLVNGFSN 90 (365)
Q Consensus 16 ~~~l~~~~~~~~~---~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~--l~~~~~~~~~~~~~~~~~~~~ 90 (365)
...|+.++..++. +|+-+.|..|+||||+|.+++....++|.+++.||+..+.+ ....+|++. .+
T Consensus 1416 ~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~----------~~ 1485 (1706)
T 3cmw_A 1416 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI----------DN 1485 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCG----------GG
T ss_pred CHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCH----------HH
Confidence 4468999985333 47777788999999999999999999999999999985533 344555442 22
Q ss_pred ceeeecCcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCh
Q 017873 91 LYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTG 153 (365)
Q Consensus 91 l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~ 153 (365)
+.+ ..|...+ .++..+...++++..|+||||+-+.+
T Consensus 1486 l~~--------------------------~~p~~~e-~~l~~~~~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1486 LLC--------------------------SQPDTGE-QALEICDALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp CEE--------------------------ECCSSHH-HHHHHHHHHHHHTCCSEEEESCSTTC
T ss_pred eEE--------------------------eCCCcHH-HHHHHHHHHHHcCCCCEEEEccHHhC
Confidence 221 2243322 35666667778888999999987644
No 78
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.97 E-value=0.00075 Score=61.55 Aligned_cols=38 Identities=29% Similarity=0.507 Sum_probs=34.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.++++.|-+|+||||++..|+..|...|..++++|.|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 56788889999999999999999999899999888876
No 79
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.88 E-value=0.0012 Score=62.09 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=42.5
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ..-.++++.|.+|+||||++.++|..++.+|.+|+.+++...
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 4467777732 122478888999999999999999999999999999999843
No 80
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.86 E-value=0.0044 Score=70.05 Aligned_cols=54 Identities=19% Similarity=0.073 Sum_probs=45.0
Q ss_pred hhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 16 EGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 16 ~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
.+.|+.++. ++ .-.++.+.|.+|+||||++.++|...++.|.+|+.||++....
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~ 424 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 424 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchH
Confidence 456888886 21 2347888899999999999999999999999999999996644
No 81
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.79 E-value=0.0012 Score=65.15 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=42.9
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ..-.++++.|.+|+||||++.++|..++.+|.+|+++++.-.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms 236 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 236 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 3467877742 122478888999999999999999999988999999999954
No 82
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.78 E-value=0.001 Score=56.82 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|+++++.|-.|+||||++..|+..+...|+++..++.|
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 35778889999999999999999999889999888643
No 83
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.75 E-value=0.0013 Score=61.87 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=40.2
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHH------------HCC----CCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLA------------EVR----PSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la------------~~G----~rVLLiD~D~~ 67 (365)
.+.|+.++.++ ...++.+.|..|+||||++.++|...+ ..| .+|+.||++..
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 35688888532 235788889999999999999998753 245 79999999865
No 84
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.75 E-value=0.0015 Score=62.03 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=42.9
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ..-.++++.|.+|+||||++.++|..++..|.+|+++++.-.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS 85 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 4567777752 222478888999999999999999999999999999999843
No 85
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.69 E-value=0.002 Score=56.75 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=39.8
Q ss_pred hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++.+........+++.|..|+||||++..+|..+...|.++..++++
T Consensus 41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3455555554456678889999999999999999999889999999874
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.67 E-value=0.0023 Score=55.39 Aligned_cols=37 Identities=32% Similarity=0.336 Sum_probs=32.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..+++.|.+|+||||++.+++..+...|.+++.+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 5677789999999999999999999889999988763
No 87
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.64 E-value=0.0073 Score=57.52 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=35.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
..++.+.|.+|+||||+.-.|+..+...|.+|.++..||...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 456677799999999999999999988899999999998743
No 88
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.63 E-value=0.0025 Score=55.51 Aligned_cols=40 Identities=30% Similarity=0.218 Sum_probs=35.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
...++.+.|..|+||||++..++..+...|.+|.+++.|.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 4467888899999999999999999988888999998884
No 89
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.58 E-value=0.0033 Score=61.18 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=39.4
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~ 67 (365)
.+.|+.++.++ .-.++.+.|..|+||||++..++..... .+.+|+.||+...
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 34688888542 2247778899999999999999877654 4578999999864
No 90
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.58 E-value=0.0058 Score=70.04 Aligned_cols=54 Identities=19% Similarity=0.068 Sum_probs=44.8
Q ss_pred hhhHHhhhc-C--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873 16 EGSVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (365)
Q Consensus 16 ~~~l~~~~~-~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~ 69 (365)
.+.|+.++. + ..-.++.+.|.+|+||||++.++|..++..|.+|+.||+....+
T Consensus 368 ~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~ 424 (2050)
T 3cmu_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 424 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC
T ss_pred CHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH
Confidence 456888886 2 12347888899999999999999999999999999999996544
No 91
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=96.56 E-value=0.015 Score=58.62 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=34.9
Q ss_pred eEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+.|++++| -.|+|||+++++|+..|.++|+||..+=+||-
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py 44 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY 44 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECC
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeecccc
Confidence 45666645 89999999999999999999999999999864
No 92
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.51 E-value=0.0036 Score=53.64 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=36.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++.++.++|..|+||||+...+...+...|++|..+..|+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 45677888999999999999999999999999999998875
No 93
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=96.47 E-value=0.02 Score=57.77 Aligned_cols=40 Identities=30% Similarity=0.306 Sum_probs=34.5
Q ss_pred eEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+.|++++| -.|+|||+++++|+..|.++|+||..+=+||-
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py 53 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPY 53 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccc
Confidence 34556646 78999999999999999999999999999864
No 94
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.46 E-value=0.0036 Score=54.90 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=40.4
Q ss_pred hhhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ..-.++.+.|.+|+||||++..++..++..|.+|++++.+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 3456666642 112466778999999999999999988888889999999864
No 95
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.45 E-value=0.0022 Score=54.56 Aligned_cols=37 Identities=22% Similarity=0.069 Sum_probs=31.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~ 64 (365)
..++++.|..|+||||++..++..+. ..|.+|+.+++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 35667789999999999999999998 78888887664
No 96
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.45 E-value=0.012 Score=55.86 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=35.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
-.++.+.|..|+||||+...++-.+...+.+|.++..|+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 4566777999999999999999998888889999999974
No 97
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.34 E-value=0.0043 Score=61.07 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=41.5
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ..-.++++.|.+|+||||++.++|...+. .|.+|+++++.-.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 3467777742 12247788899999999999999999996 5899999999843
No 98
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.26 E-value=0.013 Score=55.75 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=38.6
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~ 67 (365)
.+.|+.++... .-.++.+.|..|+||||++..++...+.. |.+|+.||+...
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 34678887532 23477777999999999999999887532 357899998754
No 99
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.25 E-value=0.0033 Score=56.83 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=33.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH-----CCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAE-----VRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~-----~G~rVLLiD~D~ 66 (365)
.+.++.++|-.|+||||+|..||..+.. .|++|+++|+|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence 4567888899999999999999987763 367899999993
No 100
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.25 E-value=0.0033 Score=62.85 Aligned_cols=52 Identities=8% Similarity=0.002 Sum_probs=42.7
Q ss_pred hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ..-.++++.|.+|+||||++.++|..++.. |.+|++++++..
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 4568888752 122477888999999999999999999986 999999999854
No 101
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.21 E-value=0.0036 Score=59.54 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=45.0
Q ss_pred hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC--------CCCEEEEeCC
Q 017873 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV--------RPSVLIISTD 65 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~--------G~rVLLiD~D 65 (365)
+++++.+...+...+.+.....+++.|.+|+||||++..++..+... +..++.+++.
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 45566666667776666656688899999999999999999998765 7788888864
No 102
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.17 E-value=0.0069 Score=59.75 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=40.8
Q ss_pred hhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC
Q 017873 17 GSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA 67 (365)
Q Consensus 17 ~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~ 67 (365)
+.|+.++.+ ..-.++++.|.+|+||||++.++|..++. .|.+|++++++..
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 457777642 12247788899999999999999999996 6899999999854
No 103
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.17 E-value=0.0084 Score=53.28 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=38.4
Q ss_pred hhhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+ ..-.++.+.|.+|+||||+...++.... ..+.++++++.+..
T Consensus 16 ~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp CTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 3456767642 1224667779999999999999997655 67888999988743
No 104
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.14 E-value=0.0047 Score=58.49 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=44.8
Q ss_pred hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCCCC
Q 017873 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHN 69 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~~~ 69 (365)
+++++.+...+...+.......+++.|.+|+||||++..++..+... +..++.+++....+
T Consensus 25 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 25 EAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp HHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence 34555566666655555555678889999999999999999988764 66777788765444
No 105
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.14 E-value=0.015 Score=54.14 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=25.1
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHHHhC--CCCcCeEEEcCc
Q 017873 224 LTTFVCVCIPEFLSLYETERLVQELTKF--EIDTHNIIINQV 263 (365)
Q Consensus 224 ~t~~~lVt~p~~~s~~et~~~~~~L~~~--gi~v~~vVvN~~ 263 (365)
.+.+++|.......-.....+++.++.. +.|+ -+|+|+.
T Consensus 87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~-ilV~NK~ 127 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPI-LLVGNKL 127 (301)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCE-EEEEECG
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCE-EEEEECc
Confidence 3466777665432223346667788877 7776 4888999
No 106
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.08 E-value=0.013 Score=51.40 Aligned_cols=52 Identities=25% Similarity=0.298 Sum_probs=37.9
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~ 67 (365)
.+.|+.++.+. .-.++.+.|..|+||||++..++..+.. .+.+++.++....
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 45677777532 2247777899999999999999986653 3556888888753
No 107
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.08 E-value=0.0032 Score=58.49 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=32.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
..++.++|-.|+||||+|..|+..+...|.++.+||+|.-+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 45778889999999999999999988888899999999543
No 108
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.04 E-value=0.0065 Score=53.17 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=37.1
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD 65 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D 65 (365)
.+..+......++++.|-.|+||||++..|+..+. ..|.++..+|.|
T Consensus 16 ~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 16 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred HhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 34444434446677779999999999999999998 789999999865
No 109
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.02 E-value=0.0047 Score=52.57 Aligned_cols=37 Identities=32% Similarity=0.277 Sum_probs=31.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++++.|-.|+||||++..||..+...|.+.-.+|+|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 4678889999999999999999998888666667654
No 110
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.99 E-value=0.0092 Score=56.63 Aligned_cols=62 Identities=21% Similarity=0.169 Sum_probs=46.0
Q ss_pred hhhhhcchhhHHhhhcCCCeE--EEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCCCCh
Q 017873 9 DQELEIPEGSVRNILEQDSLK--WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNL 70 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~--i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~~~l 70 (365)
+++++.+...+...+.+.... .+++.|..|+||||++..++..+... +..++.+++....+.
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 345666666666665544434 78889999999999999999988766 678888887665543
No 111
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.99 E-value=0.0076 Score=51.10 Aligned_cols=37 Identities=30% Similarity=0.285 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++++.|..|+||||++..|+..+...|.+++.+|.|
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 4566779999999999999999988889989888866
No 112
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.98 E-value=0.023 Score=59.22 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=30.0
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+.......+...+..+...++|+. +|+|++
T Consensus 107 D~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKi 144 (704)
T 2rdo_7 107 DGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKM 144 (704)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCC
Confidence 46777777766566678888888888899875 889999
No 113
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.97 E-value=0.0087 Score=50.24 Aligned_cols=29 Identities=24% Similarity=0.215 Sum_probs=24.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAE 54 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~ 54 (365)
.....+++.|..|+|||+++..++..+..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 33445677899999999999999999876
No 114
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.92 E-value=0.0069 Score=58.09 Aligned_cols=62 Identities=23% Similarity=0.125 Sum_probs=43.6
Q ss_pred hhhhcchhhH-HhhhcC--CCeEEEEE--eCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCCCChh
Q 017873 10 QELEIPEGSV-RNILEQ--DSLKWVFV--GGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHNLS 71 (365)
Q Consensus 10 ~~~~~~~~~l-~~~~~~--~~~~i~~~--sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~~~l~ 71 (365)
++++.+...+ .....+ .....+++ .|.+|+||||++..++..+... +..++.+++.+..+..
T Consensus 29 ~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 29 GEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp HHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred HHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 4455555555 555544 34556777 9999999999999999888753 6678888876544433
No 115
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.91 E-value=0.0099 Score=51.51 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=33.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
...++++.|..|+||||++..||..+...|..+..+|.|
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 346777789999999999999999998788877788877
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.011 Score=55.62 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=40.1
Q ss_pred hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE 54 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~ 54 (365)
+++++.++..|...+.+.....++++|++|+|||+++-.++..+..
T Consensus 26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4677888888888888777778899999999999999999999975
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.83 E-value=0.015 Score=54.31 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=25.2
Q ss_pred eEEEEeecCCc-chHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEF-LSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~-~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+.. .+..+....++.+...++|+. +|+|+.
T Consensus 94 D~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~ 132 (308)
T 3iev_A 94 DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKI 132 (308)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECG
T ss_pred CEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECc
Confidence 46666666654 344443333788888888874 888998
No 118
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.77 E-value=0.0058 Score=57.78 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=43.9
Q ss_pred hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC---CCCEEEEeCCCCCC
Q 017873 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV---RPSVLIISTDPAHN 69 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~---G~rVLLiD~D~~~~ 69 (365)
+++++.+...+...+.+.....+++.|.+|+||||++..++..+... +..++.+++....+
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 34555555555555445555677888999999999999999988765 77888888754333
No 119
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.75 E-value=0.0088 Score=50.16 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE 54 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~ 54 (365)
......+++.|..|+||||++..+|..+..
T Consensus 40 ~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 40 RRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 333455688899999999999999999876
No 120
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.71 E-value=0.0092 Score=60.36 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=34.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..+++++|..|+||||++..|+..+...|+++.++|.|
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 35677889999999999999999999999999999987
No 121
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.70 E-value=0.016 Score=49.43 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=29.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
++++.|-.|+||||++..|+..+...|.+|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 56778999999999999999999999998876654
No 122
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.70 E-value=0.014 Score=49.56 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=29.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
++++.|-.|+||||++..|+..+...|..++-.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5677899999999999999999988898876554
No 123
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.68 E-value=0.0068 Score=51.11 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=27.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+++++|-.|+||||++..||..+ |...+.+|.|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 578899999999999999998765 4556667776
No 124
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.66 E-value=0.011 Score=55.23 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=33.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D 65 (365)
..-+++.|..|+|||+++.++|..+. ..|++|+.+.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 35667789999999999999999999 999999998764
No 125
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.58 E-value=0.0082 Score=55.53 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=29.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
....+++++|-.|+||||++..|+..+ +.....||+|
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D 67 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND 67 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Confidence 345788999999999999999998754 2346788886
No 126
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.57 E-value=0.017 Score=51.57 Aligned_cols=35 Identities=20% Similarity=0.008 Sum_probs=32.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
.+.+++|..|+||||.+..++..++.+|++|+++.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 57788999999999999999999999999999994
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.49 E-value=0.74 Score=39.56 Aligned_cols=38 Identities=5% Similarity=0.008 Sum_probs=26.0
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|.............++..+...++|+. +|+|+.
T Consensus 117 d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~ 154 (223)
T 4dhe_A 117 CGMILMMDARRPLTELDRRMIEWFAPTGKPIH-SLLTKC 154 (223)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE-EEEECG
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEecc
Confidence 34666666544323455667888888888864 889999
No 128
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.44 E-value=0.015 Score=48.18 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=32.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++++.|..|+||||++..++..+...|+++..++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 4567789999999999999999998888888888764
No 129
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.33 E-value=0.019 Score=52.91 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=38.8
Q ss_pred hhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCC
Q 017873 17 GSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDP 66 (365)
Q Consensus 17 ~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~ 66 (365)
+.|+.+..+ ..-.++.+.|.+|+||||++.++|..++.. |.+|++++.+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 346665532 222477778999999999999999999865 88999999875
No 130
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.31 E-value=0.014 Score=48.99 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=26.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.++++.|-.|+||||++..|+.. ......+|.|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d 35 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRD 35 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence 467899999999999999998872 2346777775
No 131
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.31 E-value=0.01 Score=48.78 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=37.5
Q ss_pred hhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++.+...+....... .-+++.|..|+|||++|.+++....+.+...+ +++.
T Consensus 8 ~~~~~~~~~~~~~a~~~--~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 8 EWINQYRRRLQQLSETD--IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp HHHHHHHHHHHHHTTCC--SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred HHHHHHHHHHHHHhCCC--CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 44555555555554333 23567799999999999999887777777777 8775
No 132
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.29 E-value=0.015 Score=49.98 Aligned_cols=36 Identities=19% Similarity=0.106 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.+.++.|..|+||||++..++..+..+|++|+++-.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 467888999999999999999999999999999753
No 133
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.27 E-value=0.024 Score=48.83 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.++++.|-.|+||||++..||..+...| +|+..+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~ 39 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEW 39 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEET
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecC
Confidence 5678889999999999999999988777 6755443
No 134
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.27 E-value=0.021 Score=49.48 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=30.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.++++.|-.|+||||++..|+..+...|.+|..+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~ 45 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRF 45 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeC
Confidence 466777899999999999999999989998865543
No 135
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.25 E-value=0.022 Score=53.58 Aligned_cols=41 Identities=34% Similarity=0.443 Sum_probs=33.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHH--CCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~--~G~rVLLiD~D~ 66 (365)
+.+.|+.+.|..|+||||++..++..+.. .+.+|.++..|.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 34558888999999999999999988864 356799999994
No 136
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.16 E-value=0.017 Score=52.28 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=27.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|++++++|..|+||||+|..||..+ | ..+++.|.
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~ 34 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDR 34 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCS
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccH
Confidence 3678899999999999999998765 3 35678874
No 137
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.15 E-value=0.033 Score=48.34 Aligned_cols=35 Identities=9% Similarity=-0.123 Sum_probs=32.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
++.++.|.-|+||||.+..+|..+..+|++|+++-
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 58888999999999999999999999999999995
No 138
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.13 E-value=0.035 Score=48.28 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=33.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
...++.+.|..|+||||++..++..+...|.++..|..|.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 4467777899999999999999999886677788888874
No 139
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.08 E-value=0.013 Score=50.76 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=27.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+.+++++|-.|+||||++..|+..+ | ..++|.|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCc
Confidence 4578888999999999999999877 4 45678774
No 140
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=95.04 E-value=0.18 Score=45.80 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=36.0
Q ss_pred CCeEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.++.|.+++| -.|.||=.+|++++.-|..+|+||-++=+||-
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPY 64 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY 64 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccc
Confidence 3444556666 89999999999999999999999999999974
No 141
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.01 E-value=0.012 Score=49.92 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=26.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++++++.|-.|+||||++..||..+ |. -++|+|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~~--~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---KR--ILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CC--CEEECh
Confidence 4567788999999999999999876 44 456766
No 142
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.00 E-value=0.021 Score=58.07 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=34.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G-~rVLLiD~D 65 (365)
..+++++|-.|+||||+|..|+..|..+| +++.++|.|
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 45778889999999999999999999888 899999977
No 143
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.95 E-value=0.0097 Score=51.22 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=28.8
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPS 58 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~r 58 (365)
|...+.......+++.|..|+|||+++..++..+...+.+
T Consensus 29 l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 68 (226)
T 2chg_A 29 LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWR 68 (226)
T ss_dssp HHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccc
Confidence 4444444333337888999999999999999988765544
No 144
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.95 E-value=0.018 Score=51.87 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=30.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
....++++.|.+|+||||++..|+..+ +..+.++|.|.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence 345688899999999999999998765 34567888883
No 145
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.90 E-value=0.017 Score=48.02 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=26.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++|-.|+||||++..||..+ |. -.+|.|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l---~~--~~i~~d~ 34 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL---KY--PIIKGSS 34 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH---CC--CEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CC--eeecCcc
Confidence 477889999999999999998765 44 4578883
No 146
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=94.85 E-value=0.069 Score=53.72 Aligned_cols=38 Identities=11% Similarity=-0.028 Sum_probs=29.3
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+.......+..++..+...++|+ -+|+|+.
T Consensus 107 D~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~ 144 (529)
T 2h5e_A 107 DCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKL 144 (529)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECT
T ss_pred CEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCc
Confidence 4677777765544567788888888889995 6889999
No 147
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=94.84 E-value=0.31 Score=43.97 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=35.4
Q ss_pred CeEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++.|++++| -.|.||-.+|++++..|..+|++|-.+=+||-
T Consensus 23 mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPY 64 (294)
T 2c5m_A 23 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY 64 (294)
T ss_dssp CEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECB
T ss_pred eEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCc
Confidence 444556666 59999999999999999999999999999974
No 148
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.83 E-value=0.026 Score=56.64 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=36.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.++.++++.|-.|+||||+|..||..+...+.++.+++.|.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 34568889999999999999999999998899999999983
No 149
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.82 E-value=0.027 Score=57.73 Aligned_cols=39 Identities=28% Similarity=0.232 Sum_probs=34.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
...++++.|-.|+||||++..|+..|...|.++..+|.|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 346788889999999999999999999899999998866
No 150
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.80 E-value=0.03 Score=48.36 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=30.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
.++++.|-.|+||||++..||..+...+..|.++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 46778889999999999999999998898886554
No 151
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.67 E-value=0.027 Score=48.66 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=28.2
Q ss_pred hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|.......++++.|..|+||||++..|+..+ | ...+|.|.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~ 62 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADA 62 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEcccc
Confidence 3333334577888999999999999999877 5 36778774
No 152
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.65 E-value=0.044 Score=53.92 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=31.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCC-CEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~-rVLLiD~D 65 (365)
.+++.|.+|+||||++..++.++...|. +|+++..-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 7788999999999999999999999887 78877554
No 153
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.64 E-value=0.022 Score=48.37 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=26.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++++.|-.|+||||++..|+..+ |.. ++|.|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D 37 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL---RLP--LLSKD 37 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence 4678888999999999999999876 543 45654
No 154
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.62 E-value=0.018 Score=47.81 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVL 60 (365)
.++++.|..|+||||++..| ...|..++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 36788899999999999988 55677543
No 155
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.60 E-value=0.034 Score=49.49 Aligned_cols=42 Identities=26% Similarity=0.418 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHN 69 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~~~ 69 (365)
..++++.|-.|+||||++..|+..+.. .|++|.++.-.|..+
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t 63 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGT 63 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCC
Confidence 456777899999999999999999998 999998866666543
No 156
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.59 E-value=0.03 Score=53.10 Aligned_cols=35 Identities=26% Similarity=0.167 Sum_probs=29.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+++++++|..|+||||+|..||..+. +.+|++|.-
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 36889999999999999999998752 789999953
No 157
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.50 E-value=0.049 Score=50.95 Aligned_cols=40 Identities=33% Similarity=0.360 Sum_probs=30.7
Q ss_pred hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|-.....++++++|..|+||||+|..||..+ ..-+|++|.
T Consensus 4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 4 ISKASLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp ---CCCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred cccCCCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 3344556788999999999999999998764 367899984
No 158
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.47 E-value=0.012 Score=51.18 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=30.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
++++.|-.|+||||++..|+..+...|.+|.++..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56778999999999999999999888888887764
No 159
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.46 E-value=0.034 Score=51.49 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CCEEEE-eCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLII-STDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G--~rVLLi-D~D~ 66 (365)
+...++.+.|..|+||||++..|+..+...| .++..+ ..|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~ 72 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD 72 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence 4456788889999999999999999998655 445544 9984
No 160
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.44 E-value=0.042 Score=50.50 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=33.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
...+++.|..|+||||+|..+|..+...+..+..+++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 356788899999999999999999987777889998863
No 161
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.43 E-value=0.027 Score=49.20 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=29.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH-----HCC-CCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLA-----EVR-PSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la-----~~G-~rVLLiD~D 65 (365)
.+-|.++.|..|+|||+.|..++..++ +.| ++|.+..+|
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 344778889999999999998877765 567 666556555
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.37 E-value=0.041 Score=51.20 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=37.1
Q ss_pred HHhhhcCCC--eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 19 VRNILEQDS--LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 19 l~~~~~~~~--~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+..++...+ ...+++.|..|+||||++..++..+...|.+++.++++
T Consensus 26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 444544432 34567789999999999999999998889999999875
No 163
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.36 E-value=0.053 Score=47.76 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
.++++.|-.|+||||.+..|+..+...|++|.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 46677899999999999999999999999997654
No 164
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=94.34 E-value=0.23 Score=47.13 Aligned_cols=39 Identities=21% Similarity=-0.018 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+++.+++--.++||||++..|...+.++|+++..+-+-
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tg 207 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATG 207 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccC
Confidence 456667776678999999999999999999999886543
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=94.33 E-value=0.32 Score=46.82 Aligned_cols=39 Identities=8% Similarity=0.068 Sum_probs=30.2
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..+..-...++.+.+..+...|+|..-+++|+.
T Consensus 91 D~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~ 129 (397)
T 1d2e_A 91 DGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKA 129 (397)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECc
Confidence 467777777665567778888888888988656889999
No 166
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.31 E-value=0.036 Score=55.46 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=33.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH-C-CCCEEEEeCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAE-V-RPSVLIISTDP 66 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~-G~rVLLiD~D~ 66 (365)
.+++++|-.|+||||++..||..|.. + |+.+-++|.|.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 56788899999999999999999986 6 47788999997
No 167
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.27 E-value=0.051 Score=45.56 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=27.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
..++++.|..|+||||++..|+..+ | ...+|.|.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDF 41 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence 4577888999999999999998765 5 46778874
No 168
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.26 E-value=1.8 Score=35.83 Aligned_cols=38 Identities=8% Similarity=0.089 Sum_probs=26.8
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..+..........+..++...++|+ -+|+|+.
T Consensus 106 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~ 143 (195)
T 3pqc_A 106 QMVFLLVDGRIPPQDSDLMMVEWMKSLNIPF-TIVLTKM 143 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECG
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHcCCCE-EEEEECh
Confidence 4666677665443445556778888888887 4889998
No 169
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.25 E-value=0.024 Score=48.94 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=26.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++++++.|..|+||||++..||..+ |.. .+|.|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l---~~~--~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL---NVP--FIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence 4567788999999999999999877 443 46766
No 170
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.24 E-value=0.034 Score=47.03 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=27.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++.++++.|..|+||||++..||..+ | ...+|+|
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 45678888999999999999998866 4 4567776
No 171
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.23 E-value=0.05 Score=49.62 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=38.6
Q ss_pred hhcchhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC----------CCCEEEEeCCCC
Q 017873 12 LEIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV----------RPSVLIISTDPA 67 (365)
Q Consensus 12 ~~~~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~----------G~rVLLiD~D~~ 67 (365)
+..-.+.|+.++.+ ..-.++.+.|.+|+||||++..++..++.- +.+|+.+++...
T Consensus 13 i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 13 FAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp HHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred hcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 34444456656542 112367778999999999999999977642 467888888753
No 172
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.10 E-value=0.028 Score=46.90 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=26.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++++++.|-.|+||||++..||..+ |. -++|+|
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~d 34 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARAL---GY--EFVDTD 34 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CC--cEEccc
Confidence 4567888999999999999999876 43 467776
No 173
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=94.10 E-value=0.076 Score=48.36 Aligned_cols=52 Identities=4% Similarity=-0.174 Sum_probs=40.6
Q ss_pred hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+.|+.|+.++ .-.++.++|-+|.||||++..++...+++|.+++++.++..
T Consensus 7 i~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~ 60 (260)
T 3bs4_A 7 IEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYP 60 (260)
T ss_dssp SHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred cHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 35688888752 22455567666777779999999999999999999999954
No 174
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=94.06 E-value=0.2 Score=51.95 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=28.0
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+..-....+...+..+...++|+. +|+|+.
T Consensus 100 D~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~ 137 (693)
T 2xex_A 100 DGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKM 137 (693)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECT
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECC
Confidence 36677776655444567778888888898875 789999
No 175
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.05 E-value=0.036 Score=51.19 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=29.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+..+.+++.|.+|+|||++|.++|..+ |.+++.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 445677778999999999999999887 777887775
No 176
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=94.03 E-value=0.25 Score=47.58 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=29.1
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+..-...++.+.+..+...++|..-+++|+.
T Consensus 100 D~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~ 138 (405)
T 2c78_A 100 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV 138 (405)
T ss_dssp SSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECc
Confidence 356677666555556788888888889988545889999
No 177
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.99 E-value=0.034 Score=47.72 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=27.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.++++.|-.|+||||++..||..+ .|.+++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 356777899999999999998876 4677777664
No 178
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.97 E-value=0.062 Score=50.00 Aligned_cols=42 Identities=29% Similarity=0.335 Sum_probs=32.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la--~~G~rVLLiD~D~~ 67 (365)
....++.+.|..|+||||++..|+..+. -.+-+|.+|++|-.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 3346777789999999999999998876 34456999999843
No 179
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.97 E-value=0.082 Score=56.22 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
..+++.|..|+|||++|..+|..+...+..++.+|+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 46788899999999999999999988788888888763
No 180
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.97 E-value=1.5 Score=40.31 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=41.1
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCC
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLL 304 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~ 304 (365)
..+++|......+ .....+++.+...+.|+. +|+|+. .... ... .-...++++.+.++-. ..+|..
T Consensus 90 D~vl~Vvd~~~~~-~~~~~i~~~l~~~~~P~i-lvlNK~-D~~~--~~~-------~~~~~l~~l~~~~~~~--~~i~iS 155 (301)
T 1ega_A 90 ELVIFVVEGTRWT-PDDEMVLNKLREGKAPVI-LAVNKV-DNVQ--EKA-------DLLPHLQFLASQMNFL--DIVPIS 155 (301)
T ss_dssp EEEEEEEETTCCC-HHHHHHHHHHHSSSSCEE-EEEEST-TTCC--CHH-------HHHHHHHHHHTTSCCS--EEEECC
T ss_pred CEEEEEEeCCCCC-HHHHHHHHHHHhcCCCEE-EEEECc-ccCc--cHH-------HHHHHHHHHHHhcCcC--ceEEEE
Confidence 4555655543333 334567777877788874 777999 3321 011 1122344455444321 245666
Q ss_pred CCCCCCHHHHHHHH
Q 017873 305 PEEVTGIEALKAFS 318 (365)
Q Consensus 305 ~~e~~g~~~L~~l~ 318 (365)
...-.|++.|....
T Consensus 156 A~~g~~v~~l~~~i 169 (301)
T 1ega_A 156 AETGLNVDTIAAIV 169 (301)
T ss_dssp TTTTTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 55556665544433
No 181
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.94 E-value=0.043 Score=46.64 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=30.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.++.+.|..|+||||++..++-.+...|+++..|-.|..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 455555699999999999999999988888877776643
No 182
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.93 E-value=0.041 Score=51.78 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=29.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+.++++++|..|+||||++..||..+ ...+||+|.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds 38 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDS 38 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccc
Confidence 34688999999999999999998764 268899984
No 183
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.93 E-value=0.04 Score=46.91 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=26.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..+++++|..|+||||++..||..+ .| .-.+|+|
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 3467788999999999999988752 24 5678887
No 184
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.90 E-value=0.055 Score=54.98 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=32.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..++++.|-+|+||||++..++..+...|++|+++-.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 3577888999999999999999999999999998854
No 185
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=93.86 E-value=0.12 Score=51.41 Aligned_cols=40 Identities=30% Similarity=0.362 Sum_probs=34.7
Q ss_pred eEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+.|++++| -.|.||-.+|++++.-|..+|+||-++=+||-
T Consensus 4 k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpy 44 (535)
T 3nva_A 4 KYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPY 44 (535)
T ss_dssp EEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred eEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcc
Confidence 34555555 59999999999999999999999999999984
No 186
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=93.86 E-value=0.22 Score=51.70 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=28.8
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|..+.......+...+..+...++|+. +|+|+.
T Consensus 102 D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKi 139 (691)
T 1dar_A 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKM 139 (691)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECT
T ss_pred CEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECC
Confidence 36777777655555667778888888899875 889999
No 187
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.83 E-value=0.1 Score=46.09 Aligned_cols=36 Identities=8% Similarity=-0.138 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
-.|.|+.|.-|.||||.+..+|..+..+|++|+++-
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 358889999999999999999999999999999996
No 188
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.78 E-value=0.036 Score=49.96 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=38.2
Q ss_pred hhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 11 ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+..+...+....... .-+++.|..|+|||++|.+++..+.+.+.+++.+++..
T Consensus 14 ~~~~~~~~~~~~~~~~--~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 14 SFLEVLEQVSHLAPLD--KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp HHHHHHHHHHHHTTSC--SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred HHHHHHHHHHHHhCCC--CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 3444444444444332 34567899999999999999988777777888888763
No 189
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.76 E-value=0.084 Score=45.81 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=30.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
++++-|--|+||||.+..|+.+|...|++|++...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 35677999999999999999999999999987754
No 190
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.76 E-value=0.034 Score=46.73 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=25.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|+++++.|..|+||||++..||..+ | ...+|.|
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d 36 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDL---D--LVFLDSD 36 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence 3457778999999999999999876 3 3567776
No 191
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.74 E-value=0.046 Score=46.38 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=26.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++++.|..|+||||++..||.. .+...+.+|.|
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 357778899999999999988764 34456677766
No 192
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.74 E-value=0.027 Score=48.61 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=24.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++.+.|..|+||||++..||. + | +-++|+|
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d 32 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDAD 32 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---C--CEEEEcc
Confidence 4567788999999999999887 4 5 5677877
No 193
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.74 E-value=0.026 Score=53.16 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=29.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.++++.|.+|+||||+|.++|.. .|.+|+.+++
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 45678999999999999999986 6888999998
No 194
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.67 E-value=0.087 Score=47.64 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=27.5
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
.....-+++.|..|+|||++|.++|..+ |.+++.++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 3455667888999999999999999873 55555554
No 195
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.63 E-value=0.054 Score=46.93 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=28.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
-..++.+.|..|+||||++..|+..+ | .-+||+|
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D 44 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVD 44 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECc
Confidence 45677888999999999999998754 5 5779998
No 196
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.62 E-value=0.027 Score=48.08 Aligned_cols=33 Identities=30% Similarity=0.269 Sum_probs=26.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++++.|..|+||||++..||..+ | ...+|+|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 3577888999999999999999876 3 4577776
No 197
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.61 E-value=0.052 Score=46.70 Aligned_cols=33 Identities=33% Similarity=0.242 Sum_probs=26.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++++.|-.|+||||++..||..+ |.. ++|+|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 3467888999999999999999876 444 56665
No 198
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.60 E-value=0.13 Score=53.90 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=28.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..+++.|..|+|||++|..+|..+ |.+.+-+|+.
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s 522 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMS 522 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEech
Confidence 356788999999999999999988 6777777764
No 199
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.59 E-value=0.047 Score=45.51 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=26.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
-+.++++.|-.|+||||++..||..+ |.+ ++|+|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~--~id~D 39 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLE--VLDTD 39 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence 46788899999999999999998876 443 56776
No 200
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.53 E-value=0.043 Score=46.29 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=25.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++++.|-.|+||||++..||..+ | .-.+|.|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~---~--~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS---G--LKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh---C--CeEEEHH
Confidence 3466788999999999999999776 4 3456665
No 201
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.52 E-value=0.078 Score=48.65 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=29.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----CEEEEeC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRP----SVLIIST 64 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~----rVLLiD~ 64 (365)
+..-+++.|..|+|||++|.++|..+...+. .++.+++
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 3345677899999999999999999987654 5555553
No 202
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.40 E-value=0.061 Score=45.48 Aligned_cols=33 Identities=27% Similarity=0.161 Sum_probs=26.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++++.|-.|+||||++..||..+ |. ..+|.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 3577888999999999999998765 43 457766
No 203
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.36 E-value=0.055 Score=46.51 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=27.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..+.++++.|..|+||||++..||..+ |. ..+|+|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 345678888999999999999998754 43 677876
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.32 E-value=0.069 Score=52.33 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=32.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D 65 (365)
..-+++.|..|+||||++.++|..+... |.+++.+++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4567888999999999999999998865 8889998875
No 205
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.29 E-value=0.11 Score=46.16 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=29.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
..++++.|-.|+||||++..|+..+.. |..|+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 356677899999999999999999988 88886543
No 206
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=93.28 E-value=0.24 Score=51.44 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=24.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
..+|+ +.|..|+||||+.-+|. |.+++.++.+|.
T Consensus 69 ~~~V~-VvG~~naGKSSLlNaLl------g~~~~~v~~~p~ 102 (695)
T 2j69_A 69 VFRLL-VLGDMKRGKSTFLNALI------GENLLPSDVNPC 102 (695)
T ss_dssp CEEEE-EECCTTSCHHHHHHHHH------TSSCSCCCCCTT
T ss_pred CCEEE-EECCCCCCHHHHHHHHh------CCCCCCCCCCCC
Confidence 44554 44899999999998876 666666555544
No 207
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.26 E-value=0.089 Score=47.15 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=31.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.++++.|-.|+||||.+..|+..+...|.++.++--.|.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG 66 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence 467778999999999999999999999999434444454
No 208
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.18 E-value=0.06 Score=47.06 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=25.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.++++.|..|+||||++..||..+ |. ..+|+|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 3466778999999999999999876 33 467765
No 209
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.15 E-value=0.046 Score=46.23 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=25.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++++|-.|+||||+|..||..+ |. -++|.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---GV--GLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---TC--CEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CC--CEEeCc
Confidence 47778999999999999998876 44 367777
No 210
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.05 E-value=0.057 Score=45.91 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=26.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.++++.|-.|+||||++..||..+ |. ..+|+|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l---~~--~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY---GY--THLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence 3567778999999999999999876 43 467776
No 211
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.02 E-value=0.048 Score=47.15 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=27.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
...++.+.|..|+||||++..|+..+. .+.+++.|.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~ 55 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDD 55 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCc
Confidence 345777789999999999988776431 588999984
No 212
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.88 E-value=0.093 Score=49.17 Aligned_cols=34 Identities=38% Similarity=0.373 Sum_probs=28.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.++++++|..|+||||++..||..+ ..-+|++|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence 3578899999999999999998754 367899994
No 213
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.88 E-value=0.081 Score=47.33 Aligned_cols=34 Identities=26% Similarity=0.044 Sum_probs=26.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+.+++++|..|+||||+|..|+..+ | ...+|+|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~---g--~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH---C--YCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence 34567788999999999999999766 4 4566665
No 214
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.86 E-value=0.08 Score=45.23 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=26.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+.+++++|..|+||||++..||.. |. .++|+|
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~----g~--~~id~d 39 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW----GY--PVLDLD 39 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT----TC--CEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC----CC--EEEccc
Confidence 3467788899999999999988874 54 567887
No 215
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.85 E-value=0.11 Score=53.50 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=33.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
-+.++.|.+|+|||++.+++...+..+|.+||++..-
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 3778889999999999999999999999999998763
No 216
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.82 E-value=0.08 Score=47.19 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=27.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC----CCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEV----RPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~----G~rVLLiD 63 (365)
.++++.|-.|+||||.+..|+..+... |.+|.+.-
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 467788999999999999999999988 99997554
No 217
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.81 E-value=0.048 Score=47.75 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=24.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..+++.|..|+||||++..||..+ |. -.+|+|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 37 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY---GL--AHLSTG 37 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---Cc--eEEehh
Confidence 345666899999999999999887 44 456665
No 218
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.78 E-value=0.094 Score=44.22 Aligned_cols=32 Identities=34% Similarity=0.229 Sum_probs=25.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++++.|-.|+||||++..||..+ |. ..+|+|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 466778999999999999998866 43 566765
No 219
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.75 E-value=0.081 Score=50.02 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=28.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++++++|-.|+||||++..||..+ ..-+||+|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 588999999999999999998754 3679999954
No 220
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.70 E-value=0.043 Score=46.19 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVL 60 (365)
+.++++.|-.|+||||++..||..+ |..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 3577888999999999999987654 55554
No 221
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.64 E-value=0.05 Score=47.90 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.++++.|..|+||||++..||..+ |. ..+|+|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 3567778999999999999998754 43 466765
No 222
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.60 E-value=0.075 Score=48.75 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=26.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.++++.|-.|+||||++..|+..+ .| ...+|.|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~--~~--~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN--PG--FYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS--TT--EEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC--CC--cEEeccc
Confidence 3678899999999999999988732 23 5677776
No 223
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.60 E-value=0.13 Score=45.31 Aligned_cols=39 Identities=23% Similarity=0.502 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCC-CEEEEeCCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAH 68 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~-rVLLiD~D~~~ 68 (365)
+++++.|-.|+||||.+..|+.+|...|. .|. +--.|.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~-~~rep~~ 43 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV-FTREPGG 43 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE-EEESSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcce-eeeCCCC
Confidence 45677789999999999999999999998 564 4444543
No 224
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.57 E-value=0.11 Score=47.22 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=24.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..-+++.|.+|+||||++.++|..+ +.++.-+++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 3456777999999999999997754 555555543
No 225
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.57 E-value=0.11 Score=44.94 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=23.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEV 55 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~ 55 (365)
...+++.|.+|+||||++..++..+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3477888999999999999999887644
No 226
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.48 E-value=0.061 Score=44.83 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=25.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++++.|..|+||||++..||..+ | ...+|.|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d 36 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSD 36 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---C--CCEEecc
Confidence 467788999999999999988765 3 3567766
No 227
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.25 E-value=0.15 Score=50.97 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=39.3
Q ss_pred hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+.|+.+++.. .-.++.+.|..|+||||++..++..++..|.+++.+++..
T Consensus 268 ~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 268 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE 319 (525)
T ss_dssp HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 4467776542 1236777899999999999999999888899999888764
No 228
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.24 E-value=0.063 Score=46.10 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=26.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++.++|..|+||||++..||..+ | +-++|.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--Cceeccc
Confidence 77888999999999999998866 3 4677887
No 229
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.21 E-value=0.12 Score=44.45 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.++.+.|..|+||||++..||. .|.. ++|+|
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~----lg~~--~id~d 33 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD----LGVP--LVDAD 33 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT----TTCC--EEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH----CCCc--ccchH
Confidence 45778889999999999988876 4654 56887
No 230
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.19 E-value=0.074 Score=53.17 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=30.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+.++++|..|+||||+|..+|..+ |..++-+++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~ 112 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASD 112 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCC
Confidence 4577889999999999999998876 77788777653
No 231
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.19 E-value=0.089 Score=53.08 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=30.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHH---H-HCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILL---A-EVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~l---a-~~G~rVLLiD~D~~ 67 (365)
...+++.++|-||+||||+|..++... . .....|.-++.+..
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 346788899999999999999987643 2 22234777776543
No 232
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.16 E-value=0.13 Score=44.44 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=29.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
..++.+.|..|+||||++..++-.+.. ++.+++.|+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 456667788999999999999887642 5889998853
No 233
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.15 E-value=0.14 Score=48.67 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=33.2
Q ss_pred hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
++..+.+...+...+..+....+++.|..|+||||++..||..+.
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 334445555666666655555677889999999999999998875
No 234
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.14 E-value=0.11 Score=43.06 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=24.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++++.|-.|+||||++..|+..+ |. -++|+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~--~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NI--PFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TC--CEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CC--CEEECc
Confidence 46778999999999999998876 44 356776
No 235
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.12 E-value=0.072 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+.++++.|..|+||||++..||..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467778899999999999999876
No 236
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.08 E-value=0.16 Score=46.85 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=33.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~ 75 (365)
..+++.|..|+|||++|..++..+ +.++..+++..-.....+++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHHH
Confidence 456778999999999999998866 56778888775555444444
No 237
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=92.07 E-value=0.24 Score=48.53 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=41.0
Q ss_pred CCeEEEEEe---CCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhccc
Q 017873 26 DSLKWVFVG---GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF 78 (365)
Q Consensus 26 ~~~~i~~~s---gKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~ 78 (365)
.++-|++++ -+-|+||||++..|+.+|.+.|+++.+. =.+||+.-.||.+-
T Consensus 42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~--lRePSlGP~FGiKG 95 (543)
T 3do6_A 42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT--LREPSLGPTLGLKG 95 (543)
T ss_dssp CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE--ECCCCHHHHHHSCC
T ss_pred CCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE--EecCCCCCcCCccc
Confidence 355565554 3789999999999999999999998653 46789999999873
No 238
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.05 E-value=0.11 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHH
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSI 50 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~ 50 (365)
..+++.+.|-||+||||+|..++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457888889999999999998885
No 239
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=92.04 E-value=0.098 Score=52.57 Aligned_cols=38 Identities=13% Similarity=-0.049 Sum_probs=30.6
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..+..-....+...+..+...++|+. +|+|+.
T Consensus 107 D~allVvDa~~g~~~~t~~~~~~~~~~~iPii-vviNK~ 144 (528)
T 3tr5_A 107 DSALMVIDAAKGVEPRTIKLMEVCRLRHTPIM-TFINKM 144 (528)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHTTTCCEE-EEEECT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEeCC
Confidence 46777777766666778889999999999874 889998
No 240
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.92 E-value=0.17 Score=44.15 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=28.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
+.+++-|--|+||||.+..|+..|. .|++|++.-
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 4667789999999999999999996 588887664
No 241
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.91 E-value=0.1 Score=47.83 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=26.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+.++++.|..|+||||++..|+ . .|. -+||+|
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~---lg~--~~id~D 106 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-N---LGA--YIIDSD 106 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-H---HTC--EEEEHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-H---CCC--cEEehh
Confidence 45678888999999999999998 3 365 568887
No 242
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.87 E-value=0.17 Score=46.14 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=27.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.-+++.|..|+|||+++..+|..+ +.+++.+++.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~ 84 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT 84 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcch
Confidence 345667999999999999999877 6677777765
No 243
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.86 E-value=0.21 Score=44.39 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=27.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+-+++.|..|+|||++|.++|..+ +.++..+++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~ 73 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGA 73 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechH
Confidence 3456788999999999999998865 5566666654
No 244
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.82 E-value=0.11 Score=48.14 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=28.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++|..|+||||++..++..+ +.+++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchh
Confidence 478889999999999999988765 34588898763
No 245
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.80 E-value=0.15 Score=52.12 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=29.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHH----CCCCEEEEe
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIIS 63 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~----~G~rVLLiD 63 (365)
.++++++|.+|+||||+.+.+...+.. .|.+|+++-
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~A 203 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEe
Confidence 467888999999999999999888874 466787763
No 246
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.79 E-value=0.11 Score=45.59 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=27.0
Q ss_pred hhHHhhhcCCC-eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 17 GSVRNILEQDS-LKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 17 ~~l~~~~~~~~-~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
..|..++.+.+ +.-+++.|.+|+||||+|.++|..+
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555555433 3357888999999999999999987
No 247
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.67 E-value=0.13 Score=43.85 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
++++.|-.|+||||++..||..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 467789999999999999998773
No 248
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.65 E-value=0.13 Score=45.48 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=25.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..+++.|..|+||||++..||..+ | ...+|+|
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 456778999999999999999886 3 3566765
No 249
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.53 E-value=0.11 Score=45.14 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=23.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.|..|+||||++..||..+ |.. .+|+|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---g~~--~i~~d 32 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY---GIP--QISTG 32 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCe--EEeHH
Confidence 4677899999999999999876 553 46654
No 250
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.52 E-value=0.19 Score=48.63 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=28.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+++++++|..|+||||++..||..+. .-+|++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 46788999999999999999998773 35799984
No 251
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.47 E-value=0.14 Score=44.42 Aligned_cols=30 Identities=27% Similarity=0.197 Sum_probs=23.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.|..|+||||+|..||..+ |. ..+|+|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY---EI--PHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--cEeeHH
Confidence 5667999999999999998765 44 456664
No 252
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.40 E-value=0.22 Score=47.65 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.|..|+||||+...++..+...|.+|+++|-+
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46679999999999999999988889999998765
No 253
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.36 E-value=0.31 Score=47.72 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=16.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILS 49 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA 49 (365)
..+++-|.+||||||+.-.+.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~ 44 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIA 44 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHE
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 345666999999999988773
No 254
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.26 E-value=0.14 Score=50.47 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=22.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAE 54 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~ 54 (365)
..-+++.|.+|||||+++-.+|..+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 334467799999999999999999875
No 255
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.26 E-value=0.15 Score=47.17 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=33.4
Q ss_pred hHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 18 ~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.|...+.+ ....+++++|..|+|||+++.++|..+ |.+++-+++..
T Consensus 37 ~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~ 83 (324)
T 3u61_B 37 TFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSD 83 (324)
T ss_dssp HHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTT
T ss_pred HHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccc
Confidence 34444443 334678999999999999999998765 66777777643
No 256
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.26 E-value=0.17 Score=44.38 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=24.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
++++.|..|+||||++..||..+ |. ..+++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 46788999999999999999877 44 456664
No 257
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.24 E-value=0.18 Score=44.60 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
..+|+|+-|.+|+||||.|..||..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688888999999999999999876
No 258
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.21 E-value=0.3 Score=43.62 Aligned_cols=36 Identities=17% Similarity=-0.045 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
-.|.|+.|.-|.||||-+...+..+..+|++|+++-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 357899999999999999999999999999999998
No 259
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.18 E-value=0.21 Score=49.25 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=33.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++.++++.|-.|+||||++..||..+...+.++..++.|
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 3455778889999999999999999998888888887766
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.18 E-value=0.093 Score=45.34 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
++++++|..|+||||++..|+..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 467778999999999999998866
No 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=91.15 E-value=0.23 Score=53.93 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=33.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHH--HH-HCCCCEEEEeCCCCCCh
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSIL--LA-EVRPSVLIISTDPAHNL 70 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~--la-~~G~rVLLiD~D~~~~l 70 (365)
+.+++.+.|-||+||||+|..++.. .. .....++.++.+...+.
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~ 195 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH
Confidence 4578888999999999999998853 22 33456899998866554
No 262
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.09 E-value=0.09 Score=48.78 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=39.9
Q ss_pred hhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
..++.+...+....... .-+++.|..|+|||++|.+++....+.+...+.+++..
T Consensus 9 ~~~~~~~~~~~~~a~~~--~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 9 PAMQHLLNEIAMVAPSD--ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp HHHHHHHHHHHHHCSTT--SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred HHHHHHHHHHHHHhCCC--CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 44555555555554332 33567799999999999999987777788888888864
No 263
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.05 E-value=0.24 Score=44.13 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=28.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHC-----CCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEV-----RPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~-----G~rVLLiD~D 65 (365)
..++-+.|..|+||||++..++..+... ..++.+++.|
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d 67 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQD 67 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCC
Confidence 3567777999999999999998876321 2457778877
No 264
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.75 E-value=0.23 Score=43.10 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=25.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++++.|..|+||||++..||. .|. -++|+|
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~----lg~--~~id~D 35 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD----LGI--NVIDAD 35 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH----cCC--EEEEcc
Confidence 35778889999999999998875 464 678887
No 265
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.59 E-value=0.1 Score=47.94 Aligned_cols=46 Identities=24% Similarity=0.360 Sum_probs=30.6
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--CEEEEeC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIIST 64 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~--rVLLiD~ 64 (365)
|...+.++....+++.|.+|+||||++..+|..+...+. .++-+++
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 444444432222788899999999999999998864332 3444444
No 266
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.52 E-value=0.13 Score=44.06 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=27.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+++.|-.|+||||+|..+|.. |.+++.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 577789999999999998754 78899999864
No 267
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.45 E-value=0.15 Score=44.16 Aligned_cols=30 Identities=27% Similarity=0.163 Sum_probs=23.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.|..|+||||+|..||..+ |. ..+|+|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY---GI--PHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS---SC--CEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--cEEeHH
Confidence 5567999999999999998654 44 456665
No 268
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.40 E-value=0.084 Score=48.54 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=29.9
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--CEEEEeC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIIST 64 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~--rVLLiD~ 64 (365)
|...+.++...-+++.|..|+||||++..+|..+...+. .++-+++
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 334443332223778899999999999999998864432 3444443
No 269
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.31 E-value=0.95 Score=45.13 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=33.3
Q ss_pred hhHHhhhc-C-CCeEEEEEeCCCCCcHHHHHHHHHH-HHHHCCCCEEEEeCCC
Q 017873 17 GSVRNILE-Q-DSLKWVFVGGKGGVGKTTCSSILSI-LLAEVRPSVLIISTDP 66 (365)
Q Consensus 17 ~~l~~~~~-~-~~~~i~~~sgKGGvGKTT~aa~lA~-~la~~G~rVLLiD~D~ 66 (365)
+.|+.+.- . ..-.++.+.|..|+||||++..++. .+...+..++.|+...
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 34666554 1 1123566668999999999999653 3334467788998765
No 270
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.23 E-value=0.21 Score=42.25 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=24.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++++.|..|+||||++..++. ..+. ...+|.|
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~---~~~g-~~~i~~d 35 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA---QLDN-SAYIEGD 35 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSSS-EEEEEHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc---ccCC-eEEEccc
Confidence 5678889999999999999975 2222 3556655
No 271
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.22 E-value=0.18 Score=44.09 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
.++.|+.++||.|+||+|+|-.+...+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 467899999999999999998876644
No 272
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.17 E-value=0.18 Score=43.70 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
..+++++|..|+||||++..|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3577888999999999999887654
No 273
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.11 E-value=0.41 Score=44.61 Aligned_cols=42 Identities=33% Similarity=0.374 Sum_probs=33.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-C-CCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G-~rVLLiD~D~~ 67 (365)
....++.+.|..|+||||++..++..+... | .+|.+|..|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 344677788999999999999999988743 5 57888888853
No 274
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.10 E-value=0.11 Score=48.57 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=32.5
Q ss_pred hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.|...+..+...-+++.|..|+||||++-.+|..+...+.++.++..+.
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 3444554432222677899999999999999999875444444555443
No 275
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.00 E-value=0.26 Score=46.78 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=27.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.-+++.|..|+|||++|..+|..+ |.++..+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~ 106 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDAT 106 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecch
Confidence 346777999999999999999876 6777777764
No 276
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.91 E-value=0.35 Score=43.13 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=23.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
-+++.|..|+||||++.++|..+ +..++.++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~---~~~~~~i~ 77 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTIS 77 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred eEEEECcCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 36778999999999999999865 44555554
No 277
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.90 E-value=0.11 Score=50.38 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=27.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
....+++++|-.|+||||++..|+..+ | ...||.|.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~---~--~~~i~~D~ 291 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA---G--YVHVNRDT 291 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG---T--CEECCGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc---C--cEEEccch
Confidence 345788899999999999999887643 3 45666664
No 278
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.81 E-value=0.42 Score=49.97 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=31.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+++.|..|+|||++|.++|..+...+..++-+|+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence 577889999999999999999998778888888864
No 279
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.75 E-value=0.34 Score=44.92 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=33.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~ 77 (365)
+++.|..|+|||+++.++|..+ +..+.-+.+.+.....+++|..
T Consensus 49 vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~~~~~~l~g~~ 92 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPDLLPSDLIGTM 92 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTTCCHHHHHEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCCCChhhcCCce
Confidence 5667999999999999998865 6677778887665556666643
No 280
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=89.67 E-value=7.2 Score=36.89 Aligned_cols=38 Identities=11% Similarity=-0.123 Sum_probs=29.7
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEc-Cc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN-QV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN-~~ 263 (365)
..+++|.. ..-...++.+.+..+...|++..-+++| +.
T Consensus 85 D~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~ 123 (370)
T 2elf_A 85 DIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSD 123 (370)
T ss_dssp SEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGG
T ss_pred CEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 35666666 6666678888888899999998668888 88
No 281
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.61 E-value=0.2 Score=42.35 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+++++.|..|+||||++..|+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 477888999999999999988754
No 282
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.55 E-value=0.34 Score=49.52 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D 65 (365)
.+.++.|.+|+||||+.+.++..+.+ .+.+|+++..-
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 36778899999999999999998886 67888877653
No 283
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.49 E-value=0.27 Score=45.39 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=27.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++|..|+||||++..++..+ | ++.+++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeec
Confidence 578889999999999999987653 3 88888753
No 284
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.46 E-value=0.27 Score=45.76 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=31.0
Q ss_pred hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH---CCCCEEEEeC
Q 017873 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE---VRPSVLIIST 64 (365)
Q Consensus 18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~---~G~rVLLiD~ 64 (365)
.|...+......-+++.|..|+||||++..+|..+.. ...++.-+++
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 3444554442222678899999999999999999863 2344544443
No 285
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.45 E-value=0.45 Score=45.23 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=32.2
Q ss_pred hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEe
Q 017873 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIS 63 (365)
Q Consensus 18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD 63 (365)
.+..+....+ .++.+.|..|+||||+...++-.+... |.+++.+.
T Consensus 114 ~l~~l~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 114 VFKRVSDVPR-GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp HHHHHHHCSS-EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHhCCC-CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 3444444433 377888999999999999999888764 55555444
No 286
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.38 E-value=0.092 Score=42.76 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=26.9
Q ss_pred hhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHH
Q 017873 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSIL 51 (365)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~ 51 (365)
+.++.+...+....... .. +++.|..|+|||++|.+++..
T Consensus 11 ~~~~~l~~~~~~~~~~~-~~-vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 11 AAIQEMNREVEAAAKRT-SP-VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HHHHHHHHHHHHHHTCS-SC-EEEEEETTCCHHHHHGGGCCT
T ss_pred HHHHHHHHHHHHHhCCC-Cc-EEEECCCCccHHHHHHHHHHh
Confidence 44555666666555433 22 566899999999998887664
No 287
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.36 E-value=0.34 Score=42.30 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.+++.|..|+||||+|..|+ ++|. -+|..|
T Consensus 35 ~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdD 65 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELV----QRGH--RLIADD 65 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHH----TTTC--EEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHH----HhCC--eEEecc
Confidence 456778999999999887765 4566 677777
No 288
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.31 E-value=0.58 Score=42.32 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=31.6
Q ss_pred hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeC
Q 017873 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST 64 (365)
Q Consensus 18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~ 64 (365)
-|+.+. -....++.+.|..|+||||+...++-.+... ..++.+.+-
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 344443 2344577788999999999999999888643 344655543
No 289
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.20 E-value=0.28 Score=42.63 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=24.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++.+.|..|+||||++..|+..+ | .-.+|+|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 356777999999999999998765 3 3456765
No 290
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.19 E-value=0.27 Score=43.72 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+.++++.|..|+||||++..+|..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567778999999999999999876
No 291
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=89.14 E-value=4.5 Score=34.61 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=34.1
Q ss_pred CCeEEEEEeCCCCCcHHHH-HHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTC-SSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~-aa~lA~~la~~G~rVLLiD~D~ 66 (365)
..+.+.++||-||++|++- .+.|+......|++|.++.-|.
T Consensus 49 s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~ 90 (189)
T 2l8b_A 49 DRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADR 90 (189)
T ss_dssp HSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTT
T ss_pred cCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCch
Confidence 3567899999999999988 5566666668999999999883
No 292
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.13 E-value=0.23 Score=52.75 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=31.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-------CCCCEEEEeCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIISTD 65 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~-------~G~rVLLiD~D 65 (365)
....-+++.|.+|+||||++..+|..+.. .|.+++.+|+.
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 235 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence 33334567799999999999999999876 47788888764
No 293
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=89.12 E-value=5.5 Score=38.45 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=28.8
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|.....-...++.+.+..+...|++..-+|+|+.
T Consensus 129 D~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~ 167 (434)
T 1zun_B 129 DLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKM 167 (434)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECT
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcC
Confidence 467777776555456777777888888887556889999
No 294
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.06 E-value=0.25 Score=49.92 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCC-CCEEEEeCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTDP 66 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G-~rVLLiD~D~ 66 (365)
.++++.|..|+||||++..||..+...+ .++.++|.|.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 4667779999999999999999997554 5687888873
No 295
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.98 E-value=0.27 Score=46.14 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=25.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
..+++.|..|+|||++|.++|..+... .....+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~-~~~~~~~ 104 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPD-TPFTAIA 104 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSS-CCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccc-CCccccc
Confidence 467778999999999999999987522 2344444
No 296
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.84 E-value=0.36 Score=45.66 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=25.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.+-+++.|..|+|||++|.++|..+ |..++.+++
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 3456777999999999999998754 566666655
No 297
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.75 E-value=0.39 Score=44.53 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=27.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
..+++.|..|+|||++|..+|.. .+..+..+++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~---~~~~~~~~~~~~ 90 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE---MSANIKTTAAPM 90 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH---TTCCEEEEEGGG
T ss_pred CeEEEECcCCCCHHHHHHHHHHH---hCCCeEEecchh
Confidence 35678899999999999999665 467777777653
No 298
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.67 E-value=0.35 Score=52.69 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=31.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHH----CCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~----~G~rVLLiD~D~ 66 (365)
...+++.+.|-||+||||+|..++..... ....|..++...
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 45677888899999999999988876432 234688888765
No 299
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.64 E-value=0.19 Score=43.20 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=18.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH
Q 017873 30 WVFVGGKGGVGKTTCSSILSIL 51 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~ 51 (365)
.++++|..|+||||+...|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4788999999999998876543
No 300
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.27 E-value=0.31 Score=41.57 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
.++++.|..|+||||++..|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 466777999999999999887755
No 301
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.25 E-value=0.3 Score=45.47 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=31.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
...+++++|..|+||||+.-.++.. ..|+|+.+|.-|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~--~~~~~~aVi~~d~G 41 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFG 41 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSCC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh--cCCCcEEEEEecCc
Confidence 3568888999999999998887764 37899999988753
No 302
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.25 E-value=0.29 Score=44.62 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=31.1
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--CEEEEeCC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTD 65 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~--rVLLiD~D 65 (365)
|...+.++...-+++.|..|+||||++..+|..+...+. .++-+++.
T Consensus 29 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 29 LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp HHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred HHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 344444333223778899999999999999998854432 35555554
No 303
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.22 E-value=0.37 Score=45.47 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=27.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.-+++.|..|+|||++|.++|..+ |.+.+-+++-
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~~ 85 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL---DVPFTMADAT 85 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence 345667999999999999999876 6667777653
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.19 E-value=0.33 Score=42.18 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
.++++++|..|+||||+...|+..+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3577789999999999999887643
No 305
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.17 E-value=0.66 Score=44.25 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=32.4
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST 64 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~ 64 (365)
|+.+.- ....++.+.|..|+||||+...++..+... ..+|++++-
T Consensus 128 l~~l~~-~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 128 VLELCH-RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp HHHHTT-SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred HHHHhh-cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 444432 334567778999999999999999988764 455767663
No 306
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.11 E-value=0.42 Score=43.93 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=24.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
.+.+++.|..|+||||++.++|..+ +...+.++
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 4456777999999999999998764 45555554
No 307
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.10 E-value=0.47 Score=50.05 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=30.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D 65 (365)
.+.++.|.+|+||||+.+.++..+.. .+.+|+++-.-
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~t 409 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 409 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESS
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCc
Confidence 46788999999999999999998886 67888877543
No 308
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.04 E-value=0.44 Score=44.37 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=26.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+-+++.|..|+|||++|.++|..+ .+..++.+++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~ 80 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS 80 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhH
Confidence 456677999999999999999875 34555656553
No 309
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.98 E-value=0.45 Score=43.26 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=25.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..-+++.|..|+||||++.++|..+ +....-+++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 87 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC---SATFLNISA 87 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeH
Confidence 3456777999999999999998754 444554544
No 310
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.94 E-value=0.39 Score=45.01 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
...++++|..|+||||++..+|..+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34678889999999999999998875
No 311
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.93 E-value=0.38 Score=41.93 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=18.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+++-|.+|+||+|.|..||..+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4556899999999999999865
No 312
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.80 E-value=0.35 Score=41.28 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPS 58 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~r 58 (365)
-+++.|..|+||||+|..|.. +|++
T Consensus 18 gvli~G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH----TTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHH----cCCe
Confidence 346678999999999887765 6763
No 313
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.78 E-value=0.64 Score=45.34 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.0
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
-..++=+.+.|.+|+|||++|.++|..+ |...+.+++
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~ 239 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNG 239 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence 3455666777999999999999999865 555666654
No 314
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.72 E-value=0.63 Score=45.23 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=33.4
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
|+.++. ....++.+.|..|+||||+...++-.+.....++.+++-+
T Consensus 159 L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 159 FRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp HHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred HHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 455543 3456788889999999999999988876555567666533
No 315
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.67 E-value=0.49 Score=39.65 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=15.8
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 017873 30 WVFVGGKGGVGKTTCSSILS 49 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA 49 (365)
-+++-|.+|+||||+...+.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34555899999999988764
No 316
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.44 E-value=0.39 Score=42.83 Aligned_cols=33 Identities=30% Similarity=0.292 Sum_probs=26.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.++.+.|..|+||||++..+|..+ | ...+|.|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g 41 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTG 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCC
Confidence 3467888999999999999998876 3 3567776
No 317
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.31 E-value=0.57 Score=43.43 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=25.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.+-+++.|..|+|||++|.++|..+ +..+..+++
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 3456778999999999999998764 555665554
No 318
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.14 E-value=0.47 Score=46.45 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=25.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+-+++.|.+|+|||++|.++|..+... ...+-+++
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~~ 98 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSK-VPFCPMVG 98 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEEG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEeH
Confidence 345668999999999999999986321 44555554
No 319
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.02 E-value=0.38 Score=47.17 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=27.3
Q ss_pred hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
..|..++......-+++.|..|+||||++..+|..+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 345556655444567888999999999999999764
No 320
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.98 E-value=0.39 Score=40.88 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
.++.+.|..|+||||++..++-.+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 466777999999999999988754
No 321
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.77 E-value=0.54 Score=44.42 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=24.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+++.|..|+|||++|.++|..+ +..++.+++
T Consensus 87 iLL~GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred EEEECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 5566999999999999999876 455555543
No 322
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.71 E-value=0.31 Score=41.28 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
+++.+.|..|+||||+.-.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4567889999999999999987765
No 323
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.67 E-value=0.93 Score=39.26 Aligned_cols=38 Identities=16% Similarity=-0.060 Sum_probs=33.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+-++.|+.|.-|.||||.-...+.....+|++|+++..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 34688999999999999999988888889999999973
No 324
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.52 E-value=0.89 Score=40.10 Aligned_cols=39 Identities=13% Similarity=-0.074 Sum_probs=31.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe--CCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS--TDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD--~D~~ 67 (365)
.|.++.|--|+||||.....+..+..+|++|+++- .|.+
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R 69 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDR 69 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCc
Confidence 56688888999999999999999999999999994 4543
No 325
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.33 E-value=0.61 Score=45.11 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=31.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~ 71 (365)
+++.|..|+|||++...+...+...|.+|+++|. .+...
T Consensus 56 ~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp--kge~~ 94 (437)
T 1e9r_A 56 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP--NGDML 94 (437)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE--TTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC--CCchh
Confidence 4556889999999988888888889999999874 44443
No 326
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.18 E-value=0.44 Score=44.55 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
..+++.|..|+||||++-.+|..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 457788999999999999999876
No 327
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=85.99 E-value=2 Score=44.27 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=24.5
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
.+++|..+..-....+...+..+...++++. +|+|+.
T Consensus 100 ~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKi 136 (665)
T 2dy1_A 100 AALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKL 136 (665)
T ss_dssp EEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECG
T ss_pred cEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCC
Confidence 4555555544444566677777777787765 678887
No 328
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.74 E-value=0.59 Score=41.14 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=26.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++.+.|..|+||||++..||..+ | ...+|+|
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l---g--~~~~d~d 48 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF---G--FTYLDTG 48 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---C--CceecCC
Confidence 3467778999999999999988765 4 3567877
No 329
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.66 E-value=0.42 Score=44.55 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la 53 (365)
+++.|..|+||||++..+|..+-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 77789999999999999999764
No 330
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=85.62 E-value=0.72 Score=48.66 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=31.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D 65 (365)
.+.++.|.+|+|||++.+.+...+.+ .+.+||++..-
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 36778899999999999999888876 68899988754
No 331
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=85.58 E-value=1.3 Score=40.89 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=33.4
Q ss_pred hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH---CCCCEEEEeCC
Q 017873 17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE---VRPSVLIISTD 65 (365)
Q Consensus 17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~---~G~rVLLiD~D 65 (365)
..|...+.++.....++.|..|+||||++..+|..... ....++.++.+
T Consensus 7 ~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 7 ETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp HHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred HHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 34555665544567788899999999999999986421 12356666553
No 332
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.52 E-value=0.44 Score=42.13 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
+++++.|--|+||||++..|+..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4667778899999999999998763
No 333
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=85.48 E-value=1.2 Score=45.32 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=37.1
Q ss_pred hhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CCEEEEeCC
Q 017873 11 ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR----PSVLIISTD 65 (365)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G----~rVLLiD~D 65 (365)
-+..|.+.-+..+...... +++.|-.|+||||+..+-+..+...+ .++|++.+-
T Consensus 6 ~~~~Ln~~Q~~av~~~~~~-~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft 63 (647)
T 3lfu_A 6 LLDSLNDKQREAVAAPRSN-LLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFT 63 (647)
T ss_dssp HHTTCCHHHHHHHTCCSSC-EEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESS
T ss_pred hhhcCCHHHHHHHhCCCCC-EEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEecc
Confidence 3455555555555533223 45556789999999999888877653 689999886
No 334
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=85.26 E-value=0.53 Score=49.18 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAE 54 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~ 54 (365)
.-+++.|.+|||||++|-.+|..+..
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 33567799999999999999999854
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.67 E-value=0.58 Score=41.88 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
.++.+.|..|+||||++-.||..|
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 466777999999999999998654
No 336
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=84.47 E-value=0.74 Score=39.46 Aligned_cols=27 Identities=41% Similarity=0.443 Sum_probs=23.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVR 56 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G 56 (365)
++.+.|..|+||||+...++-.+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 345669999999999999999888667
No 337
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.39 E-value=0.83 Score=44.64 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=27.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++=+.+.|.+|+|||++|.++|..+ |...+.+++.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s 249 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPAS 249 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehh
Confidence 444556666999999999999998865 5566666653
No 338
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.33 E-value=0.37 Score=43.09 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+++.|..|+|||++|.++|..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5677999999999999999865
No 339
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=84.24 E-value=0.57 Score=42.17 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=25.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++++.|..|+||||++..||..+ |. -.+|.|
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l---g~--~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL---GY--TFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc---CC--cEEeCc
Confidence 456777999999999999999876 33 567766
No 340
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.14 E-value=0.64 Score=40.85 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
.+++++|..|+||||+.-.++-.+
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 477888999999999999887654
No 341
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=84.12 E-value=4.9 Score=44.14 Aligned_cols=39 Identities=8% Similarity=-0.015 Sum_probs=28.2
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|.....-...++.+.+..+...|+|..-+++|+.
T Consensus 384 D~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKi 422 (1289)
T 3avx_A 384 DGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKC 422 (1289)
T ss_dssp SEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECC
T ss_pred CEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeec
Confidence 466777666544445677777788888988556889999
No 342
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=84.05 E-value=0.81 Score=38.73 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la 53 (365)
+.+.|..|+||||+...++-.+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999999999998773
No 343
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.96 E-value=0.88 Score=44.41 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=26.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..++=+.+.|.+|+|||++|.++|..+ |...+.+++
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~ 248 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAA 248 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 445556667999999999999998764 555666654
No 344
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=83.96 E-value=0.79 Score=40.45 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=27.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.|+.++|..|+||||++..||..+ |.+ ++|.|
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~--~~d~~ 46 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL---GIH--FYDDD 46 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TCE--EECHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc---CCc--EEcHH
Confidence 4688889999999999999999877 543 57766
No 345
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.83 E-value=1.1 Score=46.78 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE 54 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~ 54 (365)
.....-+++.|..|+|||+++..+|..+..
T Consensus 204 ~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 333445677899999999999999999865
No 346
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.74 E-value=0.77 Score=44.37 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=26.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..++=+.+.|.+|+|||++|.++|..+ |...+.|++
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~ 215 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSG 215 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEh
Confidence 444556677999999999999998764 555555554
No 347
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.65 E-value=0.62 Score=41.33 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+++.|..|+||||++..+|..+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6777999999999999998754
No 348
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=83.37 E-value=0.38 Score=44.71 Aligned_cols=60 Identities=8% Similarity=0.095 Sum_probs=45.4
Q ss_pred hhhhhhhhcchhhHHhhhc----CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 6 QDQDQELEIPEGSVRNILE----QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~----~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+|+..+..|...|..+=. .+...++++-|--|+||||....|...|..+|.+|..+..-
T Consensus 60 ~~y~~~l~~lq~~L~~lQ~~~~~~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~P 123 (304)
T 3czq_A 60 EEYEETLTKLQIELVKVQFWMQATGKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKP 123 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCc
Confidence 3466666666665554432 34467889999999999999999999999999988876543
No 349
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=83.10 E-value=0.69 Score=39.66 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
+++.+.|..|+||||+...++-.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4567779999999999999987653
No 350
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=83.04 E-value=0.91 Score=44.28 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=25.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+-+++.|..|+|||++|.++|..+ .+..++.+++
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~ 201 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 201 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeH
Confidence 456667999999999999999875 3455555554
No 351
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=82.90 E-value=0.66 Score=38.74 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
+.++.|..|+||||+.-++...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 677889999999999999988764
No 352
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=82.74 E-value=0.85 Score=40.82 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCE
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSV 59 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rV 59 (365)
.++.++|+.|+||||+|..|+.. .|.++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence 56778899999999999887653 56554
No 353
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=82.61 E-value=0.62 Score=40.22 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=25.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.+++++|..|+||||++..||..+ | .-++|+|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL---S--MIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---C--CceecCC
Confidence 357788999999999999887754 5 3578877
No 354
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=82.56 E-value=1.1 Score=44.47 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=25.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..-+++.|..|+|||++|.++|..+ +..++.+++
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~ 271 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLING 271 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEc
Confidence 3456777999999999999987653 666666664
No 355
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.53 E-value=0.9 Score=37.86 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=25.1
Q ss_pred eEEEEeecC-CcchHHHHHHHHHHHHh----CCCCcCeEEEcCc
Q 017873 225 TTFVCVCIP-EFLSLYETERLVQELTK----FEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p-~~~s~~et~~~~~~L~~----~gi~v~~vVvN~~ 263 (365)
..+++|... +..+..+....+..+.. .+.|+ -+|.|+.
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~ 127 (187)
T 1zj6_A 85 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL-LIFANKQ 127 (187)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEE-EEEEECT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeE-EEEEECC
Confidence 466666654 44567777777766654 35555 4889998
No 356
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.35 E-value=1 Score=37.94 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=17.6
Q ss_pred hhhcCCCeEEEEEeCCCCCcHHHHHHHHHH
Q 017873 21 NILEQDSLKWVFVGGKGGVGKTTCSSILSI 50 (365)
Q Consensus 21 ~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~ 50 (365)
.|......+|+++ |..||||||+...+..
T Consensus 22 ~~~~~~~~ki~v~-G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 22 SMAKSAEVKLAIF-GRAGVGKSALVVRFLT 50 (196)
T ss_dssp -----CCEEEEEE-CCTTSSHHHHHHHHHH
T ss_pred ccCCCCceEEEEE-CCCCCCHHHHHHHHHh
Confidence 3433344455554 7899999999877654
No 357
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=82.30 E-value=0.5 Score=46.55 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=34.2
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCCCChhhHhh
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNLSDAFQ 75 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~~~l~~~~~ 75 (365)
.+.++.++ |..|+||||+.-.++-.+... |++++.+|.|+...+..+++
T Consensus 137 ~Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq 186 (460)
T 2npi_A 137 EGPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPG 186 (460)
T ss_dssp SCCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSS
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeecc
Confidence 34455554 899999999999998887644 42567788887655544443
No 358
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=82.27 E-value=5.2 Score=37.64 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=33.2
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..+++|+|++. ||-|=-+-...+|.+|.++|++|.++..
T Consensus 18 ~~m~rIl~~~~-~~~GHv~p~l~La~~L~~~Gh~V~v~~~ 56 (415)
T 3rsc_A 18 RHMAHLLIVNV-ASHGLILPTLTVVTELVRRGHRVSYVTA 56 (415)
T ss_dssp -CCCEEEEECC-SCHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCEEEEEeC-CCccccccHHHHHHHHHHCCCEEEEEeC
Confidence 35678888775 7889999999999999999999999984
No 359
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=82.23 E-value=0.89 Score=37.99 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=24.2
Q ss_pred eEEEEeecCCc-chHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEF-LSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~-~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..... .+. ....+...+...++|+ -+|+|+.
T Consensus 107 ~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~p~-i~v~nK~ 144 (195)
T 1svi_A 107 KAVVQIVDLRHAPSN-DDVQMYEFLKYYGIPV-IVIATKA 144 (195)
T ss_dssp EEEEEEEETTSCCCH-HHHHHHHHHHHTTCCE-EEEEECG
T ss_pred CEEEEEEECCCCCCH-HHHHHHHHHHHcCCCE-EEEEECc
Confidence 45666665433 333 3345677788888886 4889998
No 360
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.07 E-value=1.2 Score=42.45 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=25.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+-+++.|..|+|||++|.++|.. .|..++-+++
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~ 181 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA 181 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred ceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence 45677899999999999998665 4666666665
No 361
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.04 E-value=0.94 Score=39.74 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=25.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.++.+-|..|+||||++..++.. +.+|.+..-+
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 56777799999999998888765 5567776544
No 362
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.03 E-value=0.34 Score=43.51 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
.+.++++.|--|+||||++..|+..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34677888999999999999998776
No 363
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.95 E-value=1.1 Score=44.17 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=26.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..++=+.+.|.+|+|||++|.++|..+ |...+.+++
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~ 276 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIG 276 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEh
Confidence 445556677999999999999998765 455555554
No 364
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=81.94 E-value=1.2 Score=41.53 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=26.5
Q ss_pred HHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE 54 (365)
Q Consensus 19 l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~ 54 (365)
|...+.+ +.....++.|..|+||||+|..+|..+-.
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3444433 33456778899999999999999998853
No 365
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=81.75 E-value=0.91 Score=42.35 Aligned_cols=29 Identities=38% Similarity=0.414 Sum_probs=24.0
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 36 KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
-||+|||-++..|+..|. ++++.+|+=--
T Consensus 46 vGGTGKTP~vi~L~~~L~--~~~~~ilsRGY 74 (315)
T 4ehx_A 46 VGGSGKTSFVMYLADLLK--DKRVCILSRGY 74 (315)
T ss_dssp SSCCSHHHHHHHHHHHTT--TSCEEEEECCC
T ss_pred eCCCChHHHHHHHHHHHh--hcCceEEeecc
Confidence 899999999999999884 56777777543
No 366
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=81.75 E-value=36 Score=32.24 Aligned_cols=39 Identities=13% Similarity=-0.001 Sum_probs=26.8
Q ss_pred eEEEEeecCCcc-hHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFL-SLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~-s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+.+++|.....- +..++.+.+..+...+++..-+++|+.
T Consensus 108 D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~ 147 (410)
T 1kk1_A 108 DGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKI 147 (410)
T ss_dssp SEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECG
T ss_pred CEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECc
Confidence 356666665533 356777777777777876556789999
No 367
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=81.73 E-value=0.72 Score=39.86 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=24.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
.|+.++|--|+||||++..||..| |.. ++|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l---g~~--~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY---NIP--LYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT---TCC--EEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh---CcC--EEC
Confidence 478889999999999999999876 654 446
No 368
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=81.46 E-value=1.3 Score=43.33 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=25.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+++.|..|+||||++..+|..+ |...+.+|+
T Consensus 53 iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~ 83 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred EEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence 5666899999999999998765 667777776
No 369
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=81.35 E-value=0.89 Score=39.94 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=25.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
.++++.|-.|+||||.+..|+..+.. ++.++-
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ 37 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP---NCKLLK 37 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc---cceEEE
Confidence 46677789999999999999998865 455444
No 370
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.07 E-value=0.87 Score=41.07 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+++.|..|+||||++..+|..+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 6777999999999999998764
No 371
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=80.96 E-value=8.9 Score=35.89 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=32.5
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
...|+|+|++. +|-|--.-...||.+|.++|++|.++..
T Consensus 18 ~~~MrIl~~~~-~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 18 GRHMRVLFVSS-PGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp -CCCEEEEECC-SSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred hhcCEEEEEcC-CCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 34578988876 4778777889999999999999999987
No 372
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=80.90 E-value=0.89 Score=37.91 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.5
Q ss_pred EEEEEeCCCCCcHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSI 47 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~ 47 (365)
.++.+.|..|+||||++..
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 5667779999999999986
No 373
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=80.88 E-value=1.9 Score=43.16 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=26.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
..++++.|..|+||||++-.+|..+ +....-++++
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~~ 142 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISLG 142 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEec
Confidence 3467788999999999999999987 3445555554
No 374
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=80.71 E-value=1.3 Score=39.33 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=30.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+++++++++-||.|+ ++|..|++.|.+|.++|-++.
T Consensus 21 m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 21 MSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp -CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred cCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 3567889988999986 678888999999999998764
No 375
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=80.51 E-value=1.2 Score=37.57 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=21.1
Q ss_pred hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHH
Q 017873 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSIL 48 (365)
Q Consensus 18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~l 48 (365)
-++.+...+..+|+++ |.+||||||+...+
T Consensus 20 ~~~~~~~~~~~ki~v~-G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMV-GLDAAGKTTILYKL 49 (192)
T ss_dssp GGGGTTTTSCEEEEEE-ESTTSSHHHHHHHH
T ss_pred HHHHhccCCccEEEEE-CCCCCCHHHHHHHH
Confidence 3444555555666665 68899999998876
No 376
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=80.43 E-value=0.94 Score=41.11 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=23.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+.+.|.+|+||||++-.+|..+ +...+.++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKG 77 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEc
Confidence 6777999999999999998753 333455543
No 377
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.31 E-value=1.4 Score=42.94 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=26.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..++=+.+.|.+|+|||++|.++|..+ |...+.+++
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~ 249 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVG 249 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEES
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEH
Confidence 444556666999999999999998865 455666654
No 378
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=80.21 E-value=1.5 Score=39.91 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=25.9
Q ss_pred HHhhhcCC-C-eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 19 VRNILEQD-S-LKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 19 l~~~~~~~-~-~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
+...+.+. + +.-+++.|.+|+|||+++.++|..+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 55566654 4 3457788999999999999998854
No 379
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=80.18 E-value=1.3 Score=36.74 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=24.4
Q ss_pred eEEEEeecC-CcchHHHHHHHHHHHHh----CCCCcCeEEEcCc
Q 017873 225 TTFVCVCIP-EFLSLYETERLVQELTK----FEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p-~~~s~~et~~~~~~L~~----~gi~v~~vVvN~~ 263 (365)
..+++|... +..+..++...+..+.. .+.|+ -+|.|+.
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~ 129 (186)
T 1ksh_A 87 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL-LIFANKQ 129 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE-EEEEECT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcE-EEEEeCc
Confidence 456666654 45567777766666544 35555 5889998
No 380
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=80.06 E-value=0.8 Score=40.06 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=14.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHH-HHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILS-ILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA-~~l 52 (365)
.++.+.|..|+||||++..|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 466778999999999999888 554
No 381
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=79.83 E-value=4.2 Score=37.94 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=33.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+.|||+|++. ||.|=-+=...||..|+++|++|.++...
T Consensus 21 ~~MRIL~~~~-p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~ 59 (400)
T 4amg_A 21 QSMRALFITS-PGLSHILPTVPLAQALRALGHEVRYATGG 59 (400)
T ss_dssp CCCEEEEECC-SSHHHHGGGHHHHHHHHHTTCEEEEEECS
T ss_pred CCCeEEEECC-CchhHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 5688888764 67899999999999999999999999764
No 382
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=79.82 E-value=1.2 Score=38.31 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
.++.+.|..|+||||+.-.++-.+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 466777999999999999988765
No 383
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=79.63 E-value=1.5 Score=35.78 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la 53 (365)
.+.++.|..|+||||+--++...+.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4678889999999999999888774
No 384
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=79.37 E-value=16 Score=35.73 Aligned_cols=39 Identities=10% Similarity=-0.064 Sum_probs=27.0
Q ss_pred eEEEEeecCCcc-------hHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFL-------SLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~-------s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|.....- ....+.+.+..+...|++..-+|+|+.
T Consensus 136 D~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~ 181 (483)
T 3p26_A 136 DMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 181 (483)
T ss_dssp SEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred CEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECc
Confidence 466666665442 225777788888888987556889999
No 385
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=79.33 E-value=1.4 Score=39.39 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=34.0
Q ss_pred HhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 20 ~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
..|..-.+++++++++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 21 ~~m~~~~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 63 (260)
T 3un1_A 21 QSMMRNQQKVVVITGASQGIGA-----GLVRAYRDRNYRVVATSRSIK 63 (260)
T ss_dssp HHHHHTTCCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred hhhhCcCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence 3444456778889999999996 577788899999999997754
No 386
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=79.21 E-value=1.5 Score=35.14 Aligned_cols=38 Identities=5% Similarity=-0.069 Sum_probs=23.6
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|.............+...+...++|+ -+|.|+.
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~ 118 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPV-ILVATKV 118 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHHHHTCCE-EEEEECC
T ss_pred CEEEEEEECCCcccHhHHHHHHHHHhcCCCE-EEEEECc
Confidence 4666666654422222345666777778876 5889998
No 387
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=78.84 E-value=1.6 Score=35.61 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=26.7
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|.........+....+..+...++|+ -+|+|+.
T Consensus 80 d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~-ilv~nK~ 117 (178)
T 2lkc_A 80 DIVILVVAADDGVMPQTVEAINHAKAANVPI-IVAINKM 117 (178)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHGGGSCCE-EEEEETT
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHhCCCCE-EEEEECc
Confidence 4667777655544556666777777778886 5889998
No 388
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=78.84 E-value=1.1 Score=35.95 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=22.7
Q ss_pred EEEEeecC-CcchHHHHHHHHHHHHhC----CCCcCeEEEcCc
Q 017873 226 TFVCVCIP-EFLSLYETERLVQELTKF----EIDTHNIIINQV 263 (365)
Q Consensus 226 ~~~lVt~p-~~~s~~et~~~~~~L~~~----gi~v~~vVvN~~ 263 (365)
.+++|... +..+..+....+..+... ++|+ -+|+|+.
T Consensus 77 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~-iiv~nK~ 118 (166)
T 2ce2_X 77 GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM-VLVGNKS 118 (166)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEch
Confidence 45555544 445556666666666543 6665 4889998
No 389
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=78.67 E-value=1.3 Score=36.92 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=15.9
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSI 50 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~ 50 (365)
+++-|.+||||||+...+..
T Consensus 24 i~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 34457899999999988864
No 390
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=78.65 E-value=1.5 Score=37.23 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=25.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEe
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEV------RPSVLIIS 63 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD 63 (365)
+++.+..|.|||.++...+..+... +.+++++-
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~ 89 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLV 89 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEE
Confidence 5667899999999999888876532 56788774
No 391
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=78.61 E-value=1.5 Score=38.27 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=23.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
.-+-++|.-|+||||++..|+. .|. -+||+|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~----~g~--~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA----RGA--SLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCC--cEEECc
Confidence 3455668889999999987764 565 678999
No 392
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=78.52 E-value=1.5 Score=36.41 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=23.2
Q ss_pred eEEEEeecC-CcchHHHHHHHHHHHHh----CCCCcCeEEEcCc
Q 017873 225 TTFVCVCIP-EFLSLYETERLVQELTK----FEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p-~~~s~~et~~~~~~L~~----~gi~v~~vVvN~~ 263 (365)
..+++|... +..+..+....+..+.. .+.|+ -+|.|+.
T Consensus 85 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~ 127 (181)
T 1fzq_A 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV-LIFANKQ 127 (181)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCE-EEEEECT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCE-EEEEECc
Confidence 456666554 44566666665555432 35665 4889998
No 393
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=78.47 E-value=12 Score=34.09 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=31.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|+|+++++-.| |-...+.++|..|+++|++|.++..+.
T Consensus 7 mkIl~~~~~~g-G~~~~~~~la~~L~~~G~~V~v~~~~~ 44 (364)
T 1f0k_A 7 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTAD 44 (364)
T ss_dssp CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred cEEEEEeCCCc-cchhHHHHHHHHHHHcCCEEEEEecCC
Confidence 68887775434 777778899999999999999998765
No 394
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=78.44 E-value=1.5 Score=41.89 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=21.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
...++.+.|..|+||||++..++..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44577788999999999999999754
No 395
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=78.33 E-value=1.1 Score=36.79 Aligned_cols=39 Identities=5% Similarity=0.037 Sum_probs=24.3
Q ss_pred ceEEEEeecC-CcchHHHHHHHHHHHHh----CCCCcCeEEEcCc
Q 017873 224 LTTFVCVCIP-EFLSLYETERLVQELTK----FEIDTHNIIINQV 263 (365)
Q Consensus 224 ~t~~~lVt~p-~~~s~~et~~~~~~L~~----~gi~v~~vVvN~~ 263 (365)
...+++|... +..+..+....+..+.. .+.|+ -+|+|+.
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~ 129 (183)
T 1moz_A 86 TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAAL-LVFANKQ 129 (183)
T ss_dssp EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEE-EEEEECT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeE-EEEEECC
Confidence 3466666654 44566777666666553 34554 4888998
No 396
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=78.27 E-value=1.9 Score=38.05 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=22.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
.++.+..|.|||.++..++..+ +.+++++-
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~ 140 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVV 140 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---CSCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 4555688999999988876653 67788774
No 397
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=78.10 E-value=1.1 Score=41.62 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPS 58 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~r 58 (365)
-+.+.|..|+||||+|..| .++|++
T Consensus 149 gvli~G~sG~GKStlal~l----~~~G~~ 173 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALDL----INKNHL 173 (312)
T ss_dssp EEEEEESSSSSHHHHHHHH----HTTTCE
T ss_pred EEEEEcCCCCCHHHHHHHH----HHcCCE
Confidence 3567789999999998765 447874
No 398
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=77.96 E-value=1.7 Score=37.40 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAE 54 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~ 54 (365)
.+.++.|..|+||||+--++.++|..
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 57788899999999999999887764
No 399
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=77.88 E-value=1.7 Score=36.07 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=24.5
Q ss_pred eEEEEeecCC-cchHHHHHHHHHHHHh-CCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPE-FLSLYETERLVQELTK-FEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~-~~s~~et~~~~~~L~~-~gi~v~~vVvN~~ 263 (365)
..+++|.... ..+..+....+..+.. .+.|+ -+|+|+.
T Consensus 118 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pi-ilv~NK~ 157 (208)
T 3clv_A 118 TCAIVVFDISNSNTLDRAKTWVNQLKISSNYII-ILVANKI 157 (208)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEE-EEEEECT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcE-EEEEECC
Confidence 4667766654 4455666666666664 45444 5899999
No 400
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=77.79 E-value=3 Score=40.45 Aligned_cols=36 Identities=28% Similarity=0.256 Sum_probs=28.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..+++-+.|. -||||+++-++..|...|+||.++..
T Consensus 51 ~~~vI~VtGT--NGKgSt~~~l~~iL~~~G~~vg~~tS 86 (437)
T 3nrs_A 51 APKIFTVAGT--NGKGTTCCTLEAILLAAGLRVGVYSS 86 (437)
T ss_dssp SSEEEEEECS--SSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cCCEEEEECC--cChHHHHHHHHHHHHHCCCcEEEECC
Confidence 3445544444 58999999999999999999998755
No 401
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=77.74 E-value=0.78 Score=42.50 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=19.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSILLA 53 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la 53 (365)
+++.|..|+|||++|..+|..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 67779999999999999998653
No 402
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=77.56 E-value=1.2 Score=38.74 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
.++.+.|..|+||||+.-.++-.+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 456667999999999999998766
No 403
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=77.48 E-value=1.7 Score=41.51 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=24.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+|++-|-=|+||||++..|+..|...| +++--.|
T Consensus 50 ~fIt~EG~dGsGKTT~~~~Lae~L~~~g---vv~trEP 84 (376)
T 1of1_A 50 LRVYIDGPHGMGKTTTTQLLVALGSRDD---IVYVPEP 84 (376)
T ss_dssp EEEEECSSTTSSHHHHHHHHHC----CC---EEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhCC---EEEEeCC
Confidence 3577889999999999999999998777 4444444
No 404
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=77.47 E-value=1.9 Score=35.14 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=22.6
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|..+.. .......+..+.+.+.|+ -+|.|+.
T Consensus 83 ~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~-ilv~nK~ 118 (165)
T 2wji_A 83 DLVVNIVDATA--LERNLYLTLQLMEMGANL-LLALNKM 118 (165)
T ss_dssp SEEEEEEETTC--HHHHHHHHHHHHHTTCCE-EEEEECH
T ss_pred CEEEEEecCCc--hhHhHHHHHHHHhcCCCE-EEEEEch
Confidence 35666666543 233445566666678776 4788988
No 405
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=77.30 E-value=1.5 Score=35.29 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=23.3
Q ss_pred eEEEEeecC-CcchHHHHHHHHHHHHhC--CCCcCeEEEcCc
Q 017873 225 TTFVCVCIP-EFLSLYETERLVQELTKF--EIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p-~~~s~~et~~~~~~L~~~--gi~v~~vVvN~~ 263 (365)
..+++|... +..+.......+..+... +.|+ -+|+|+.
T Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-ilv~nK~ 119 (168)
T 1z2a_A 79 QACVLVFSTTDRESFEAISSWREKVVAEVGDIPT-ALVQNKI 119 (168)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCE-EEEEECG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECc
Confidence 456666655 344556666666666543 5665 4889998
No 406
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=77.26 E-value=1.5 Score=41.20 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=24.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
..|++-|-=|+||||++..|+..+...| +++--.|
T Consensus 5 ~fI~~EG~dGsGKTT~~~~La~~L~~~g---v~~trEP 39 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVALGSRDD---IVYVPEP 39 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC----CC---EEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhCC---EEEEeCC
Confidence 4677889999999999999999998776 4444454
No 407
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=77.13 E-value=1.5 Score=40.46 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=22.1
Q ss_pred HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHH
Q 017873 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILS 49 (365)
Q Consensus 19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA 49 (365)
++.+..--...++.+.|..|+||||+.-.++
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 3433332233566777999999999999988
No 408
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=77.04 E-value=1.9 Score=35.35 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=24.0
Q ss_pred eEEEEeecC-CcchHHHHH-HHHHHHHhC--CCCcCeEEEcCc
Q 017873 225 TTFVCVCIP-EFLSLYETE-RLVQELTKF--EIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p-~~~s~~et~-~~~~~L~~~--gi~v~~vVvN~~ 263 (365)
..+++|... +..+..... ..+..+... ++|+ -+|.|+.
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~ 122 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-VLVGTKL 122 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE-EEEEECH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEech
Confidence 466666665 445556665 466666654 5665 4888998
No 409
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=76.91 E-value=1.5 Score=36.27 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~l 52 (365)
-.++.+.|..|+||||+.-.++-.+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3466677999999999999999887
No 410
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=76.85 E-value=1.4 Score=37.14 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=24.5
Q ss_pred eEEEEeecC-CcchHHHHHHHHHHHHhC----CCCcCeEEEcCc
Q 017873 225 TTFVCVCIP-EFLSLYETERLVQELTKF----EIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p-~~~s~~et~~~~~~L~~~----gi~v~~vVvN~~ 263 (365)
..+++|... +..+.......+..+... ++|+ -+|.|+.
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~ 139 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKA 139 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCE-EEEEECT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECc
Confidence 455665554 455667777777777654 5665 4888998
No 411
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=76.83 E-value=32 Score=28.78 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=22.3
Q ss_pred CCeEEE-EEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 26 DSLKWV-FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~-~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++.+|+ +.+|.|| ++..+++.+.+|+-||.++.
T Consensus 25 ~g~~VLDlG~G~G~---------~s~~la~~~~~V~gvD~~~~ 58 (191)
T 3dou_A 25 KGDAVIEIGSSPGG---------WTQVLNSLARKIISIDLQEM 58 (191)
T ss_dssp TTCEEEEESCTTCH---------HHHHHTTTCSEEEEEESSCC
T ss_pred CCCEEEEEeecCCH---------HHHHHHHcCCcEEEEecccc
Confidence 456666 7777664 33344555888999999875
No 412
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=76.44 E-value=1.6 Score=38.99 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=30.6
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
-.+++++++++-||.|+ ++|..|++.|.+|.++|-+..
T Consensus 25 l~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 62 (260)
T 3gem_A 25 LSSAPILITGASQRVGL-----HCALRLLEHGHRVIISYRTEH 62 (260)
T ss_dssp --CCCEEESSTTSHHHH-----HHHHHHHHTTCCEEEEESSCC
T ss_pred CCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence 34577889998999886 577888899999999998764
No 413
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=76.42 E-value=1.5 Score=39.24 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=29.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.+++-++
T Consensus 20 ~~k~~lVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 55 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGF-----GIAQGLAEAGCSVVVASRNL 55 (267)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3567889988999986 56778888999999998764
No 414
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=76.09 E-value=2 Score=38.62 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=25.3
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCC-CEEEEe
Q 017873 32 FVGGKGGVGKTTCSSILSILLAEVRP-SVLIIS 63 (365)
Q Consensus 32 ~~sgKGGvGKTT~aa~lA~~la~~G~-rVLLiD 63 (365)
++.+..|.|||.++..++..+...|. +|+++-
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~ 164 (282)
T 1rif_A 132 ILNLPTSAGRSLIQALLARYYLENYEGKILIIV 164 (282)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 44889999999999988887665554 788774
No 415
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=75.41 E-value=1.3 Score=36.46 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.1
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILS 49 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA 49 (365)
+++-|..|+||||+...+.
T Consensus 9 i~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3455789999999988776
No 416
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=75.35 E-value=1.8 Score=38.83 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=32.6
Q ss_pred HhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 20 ~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
..|.+-.+++++++++-||.|+ ++|..|++.|.+|.+++-+.
T Consensus 20 ~~m~~l~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~ 61 (266)
T 3grp_A 20 GSMFKLTGRKALVTGATGGIGE-----AIARCFHAQGAIVGLHGTRE 61 (266)
T ss_dssp -CTTCCTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred cchhccCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3344445678889999999886 57788899999999998764
No 417
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=75.14 E-value=2.1 Score=37.46 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=29.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+++++++++-||.|+ ++|..|++.|.+|.++|-+.
T Consensus 3 ~k~vlVTGas~GIG~-----a~a~~l~~~G~~V~~~~r~~ 37 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGR-----ALTIGLVERGHQVSMMGRRY 37 (235)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 467889998999997 57888889999999998774
No 418
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.11 E-value=1.7 Score=45.79 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=25.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
..+=+++.|.+|+|||++|-++|.. .|..++.|++
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~e---lg~~~~~v~~ 271 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANE---TGAFFFLING 271 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTT---TTCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH---hCCeEEEEEh
Confidence 4455667799999999999988864 3555555554
No 419
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=75.02 E-value=1.9 Score=38.70 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=31.5
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
..+++++++++-||.|+ ++|..|++.|.+|+++|.+..
T Consensus 12 ~~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~ 49 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGL-----AVVDALVRYGAKVVSVSLDEK 49 (269)
T ss_dssp TTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCC-
T ss_pred CCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCch
Confidence 35778999999999997 577888999999999998754
No 420
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=74.99 E-value=2.2 Score=36.91 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=23.1
Q ss_pred eEEEEeecCCc---chHHHHHHHHHHHHhC--CCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEF---LSLYETERLVQELTKF--EIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~---~s~~et~~~~~~L~~~--gi~v~~vVvN~~ 263 (365)
..+++|..... .........+..+... ++|+ -+|+|+.
T Consensus 110 d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~pi-ilv~nK~ 152 (228)
T 2qu8_A 110 GVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSI-VIGFNKI 152 (228)
T ss_dssp EEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCE-EEEEECG
T ss_pred cEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcE-EEEEeCc
Confidence 45666655432 2234445667777765 6775 4889998
No 421
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=74.79 E-value=2.4 Score=34.97 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=23.2
Q ss_pred EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
.+++|.... +.......+..+...+.|+ -+|.|+.
T Consensus 88 ~~i~v~d~~--~~~~~~~~~~~~~~~~~pi-ilv~nK~ 122 (188)
T 2wjg_A 88 LVVNIVDAT--ALERNLYLTLQLMEMGANL-LLALNKM 122 (188)
T ss_dssp EEEEEEEGG--GHHHHHHHHHHHHTTTCCE-EEEEECH
T ss_pred EEEEEecch--hHHHHHHHHHHHHhcCCCE-EEEEEhh
Confidence 555665543 3555666777777778776 4778987
No 422
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=74.78 E-value=3.1 Score=40.98 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=25.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
-+++.|..|+||||++-++|..+ |....-+++.
T Consensus 51 gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~ 83 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA---NVPFFHISGS 83 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHH
Confidence 36678999999999999998754 5666666653
No 423
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=74.58 E-value=2.2 Score=38.15 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=29.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
++++++++-+|.|+ ++|..|++.|.+|+++|.|.
T Consensus 3 K~vlVTGas~GIG~-----aia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 3 RGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp CEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEecCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 57888989999997 57888999999999999874
No 424
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=74.54 E-value=1.7 Score=38.91 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=31.9
Q ss_pred hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|.+-.+++++++++-||.|+ ++|..|++.|.+|.+++-++
T Consensus 15 ~~~l~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 54 (266)
T 4egf_A 15 VLRLDGKRALITGATKGIGA-----DIARAFAAAGARLVLSGRDV 54 (266)
T ss_dssp GGCCTTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 44445678889998999886 56778889999999998864
No 425
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=74.37 E-value=1.6 Score=36.38 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=15.1
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILS 49 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA 49 (365)
+++-|.+||||||+...++
T Consensus 5 v~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEESCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3455899999999988765
No 426
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=74.30 E-value=3.2 Score=39.56 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=34.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC---hhhHhhcc
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN---LSDAFQQR 77 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~---l~~~~~~~ 77 (365)
+++.|..|+|||++|..+.....+.+...+.+||..-+. -+.+||..
T Consensus 163 vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~ 212 (387)
T 1ny5_A 163 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYE 212 (387)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBC
T ss_pred eEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCC
Confidence 488899999999999888776656667888899863221 23566654
No 427
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=74.28 E-value=1.9 Score=36.60 Aligned_cols=38 Identities=8% Similarity=0.078 Sum_probs=24.4
Q ss_pred eEEEEeecC-CcchHHHHH-HHHHHHHhC--CCCcCeEEEcCc
Q 017873 225 TTFVCVCIP-EFLSLYETE-RLVQELTKF--EIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p-~~~s~~et~-~~~~~L~~~--gi~v~~vVvN~~ 263 (365)
..+++|... +..+..+.. ..+..+... ++|+ -+|.|+.
T Consensus 103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~ 144 (204)
T 4gzl_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKL 144 (204)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE-EEEEECH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEech
Confidence 456666554 445666665 566777765 6665 4888998
No 428
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=74.25 E-value=2.7 Score=37.62 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=29.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+++++++++-||.|+ ++|..|++.|.+|.+++-+.
T Consensus 16 ~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 50 (266)
T 3p19_A 16 KKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARRV 50 (266)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 467888988999997 57788899999999998763
No 429
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=74.24 E-value=2.3 Score=35.77 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=22.9
Q ss_pred eEEEEeecC-CcchHHHHHHHHHHHHhC---CCCcCeEEEcCc
Q 017873 225 TTFVCVCIP-EFLSLYETERLVQELTKF---EIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p-~~~s~~et~~~~~~L~~~---gi~v~~vVvN~~ 263 (365)
..+++|... +..+.......+..+... ++|+ -+|+|+.
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~NK~ 143 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPI-MLVGNKA 143 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCE-EEEEECG
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCE-EEEEECc
Confidence 356666554 445556666666666543 5665 4888998
No 430
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=74.12 E-value=2.9 Score=37.65 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=32.7
Q ss_pred hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+.+-.+++++++++-||.|+ ++|..|++.|.+|.+++-+..
T Consensus 27 ~~~l~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~~ 67 (276)
T 3r1i_A 27 LFDLSGKRALITGASTGIGK-----KVALAYAEAGAQVAVAARHSD 67 (276)
T ss_dssp GGCCTTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred ccCCCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 33445678899999999996 577888899999999988643
No 431
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=74.05 E-value=2.3 Score=35.86 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=23.2
Q ss_pred eEEEEeecCC-cchHHHHHHHHHHHHhC---CCCcCeEEEcCc
Q 017873 225 TTFVCVCIPE-FLSLYETERLVQELTKF---EIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~-~~s~~et~~~~~~L~~~---gi~v~~vVvN~~ 263 (365)
..+++|.... ..+.......+..+... ++|+ -+|+|+.
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~ 135 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQL-LLVGNKS 135 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEE-EEEEECT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECC
Confidence 4666666553 44556666666666543 4554 4888998
No 432
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=74.02 E-value=1.8 Score=35.37 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=15.4
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSI 50 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~ 50 (365)
+++-|.+||||||+...+..
T Consensus 10 i~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 34558899999999877654
No 433
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=74.00 E-value=2.5 Score=37.53 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=30.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|+++|.+|.++|-++
T Consensus 7 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 42 (259)
T 4e6p_A 7 EGKSALITGSARGIGR-----AFAEAYVREGATVAIADIDI 42 (259)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4578889998999997 57788889999999998764
No 434
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=73.86 E-value=2.1 Score=34.25 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=15.0
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILS 49 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA 49 (365)
+++-|..|+||||+...+.
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3445789999999987776
No 435
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=73.67 E-value=2.6 Score=37.30 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=30.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+++++++++-||.|+ ++|..|++.|.+|.++|-++.
T Consensus 6 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~ 42 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGA-----EIAKKFAAEGFTVFAGRRNGE 42 (252)
T ss_dssp CSCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred CCCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 4578889999999986 577888899999999988753
No 436
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=73.57 E-value=2.5 Score=37.86 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=30.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|+++|.+.
T Consensus 12 ~gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 47 (278)
T 3sx2_A 12 TGKVAFITGAARGQGR-----AHAVRLAADGADIIAVDLCD 47 (278)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCeEEEEeccc
Confidence 4578889999999996 46778889999999999873
No 437
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=73.56 E-value=2.1 Score=34.44 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=23.0
Q ss_pred EEEEeecC-CcchHHHHHHHHHHHHhC-----CCCcCeEEEcCc
Q 017873 226 TFVCVCIP-EFLSLYETERLVQELTKF-----EIDTHNIIINQV 263 (365)
Q Consensus 226 ~~~lVt~p-~~~s~~et~~~~~~L~~~-----gi~v~~vVvN~~ 263 (365)
.+++|... +..+..+....+..+.+. ++|+ -+|+|+.
T Consensus 77 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pi-i~v~nK~ 119 (172)
T 2erx_A 77 AFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI-MLVGNKC 119 (172)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCE-EEEEECG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCE-EEEEEcc
Confidence 55665554 444556666666666543 5665 4889998
No 438
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=73.50 E-value=3 Score=40.19 Aligned_cols=35 Identities=26% Similarity=0.171 Sum_probs=27.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.+++-++|. -||||++.-++..|...|++|.++-.
T Consensus 49 ~~vI~VTGT--nGKtTT~~~l~~iL~~~G~~~g~~~s 83 (422)
T 1w78_A 49 PFVFTVAGT--NGKGTTCRTLESILMAAGYKVGVYSS 83 (422)
T ss_dssp SEEEEEECS--SCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CcEEEEeCC--cChHHHHHHHHHHHHHCCCCEEEECC
Confidence 345555444 58999999999999999999987654
No 439
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=73.47 E-value=2.2 Score=38.45 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=30.2
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|+++|-++
T Consensus 28 ~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~ 63 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGL-----AVARRLADEGCHVLCADIDG 63 (277)
T ss_dssp TTCEEEETTTTSTHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4567889999999997 57788889999999998764
No 440
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=73.35 E-value=2.7 Score=36.81 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=30.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+++++++++-||.|+ ++|..|+++|.+|.+++-++.
T Consensus 6 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~ 42 (241)
T 1dhr_A 6 EARRVLVYGGRGALGS-----RCVQAFRARNWWVASIDVVEN 42 (241)
T ss_dssp CCCEEEEETTTSHHHH-----HHHHHHHTTTCEEEEEESSCC
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHhCCCEEEEEeCChh
Confidence 3567889988999887 467788899999999998764
No 441
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=73.31 E-value=2 Score=37.96 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=30.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.++|-++
T Consensus 8 ~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 43 (248)
T 3op4_A 8 EGKVALVTGASRGIGK-----AIAELLAERGAKVIGTATSE 43 (248)
T ss_dssp TTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4678889988999886 57788889999999998764
No 442
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=73.31 E-value=2.5 Score=36.80 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+++++++++-||.|+ ++|..|+++|.+|.+++-++.
T Consensus 3 ~k~vlITGas~gIG~-----~~a~~l~~~G~~V~~~~r~~~ 38 (236)
T 1ooe_A 3 SGKVIVYGGKGALGS-----AILEFFKKNGYTVLNIDLSAN 38 (236)
T ss_dssp CEEEEEETTTSHHHH-----HHHHHHHHTTEEEEEEESSCC
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEecCcc
Confidence 467888888999886 577788899999999998764
No 443
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=73.27 E-value=2.1 Score=37.39 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=29.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
++++++++++-||.|+ ++|..|++.|.+|++++-++
T Consensus 13 ~~k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 48 (247)
T 3i1j_A 13 KGRVILVTGAARGIGA-----AAARAYAAHGASVVLLGRTE 48 (247)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEecCH
Confidence 3578889999999997 46788889999999998774
No 444
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=73.25 E-value=3.8 Score=41.09 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=25.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHC---------CCCEEEEe
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEV---------RPSVLIIS 63 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~---------G~rVLLiD 63 (365)
..+++. +.-|.|||.++..++..+.+. +.+||++-
T Consensus 199 ~~~ll~-~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~ 242 (590)
T 3h1t_A 199 KRSLIT-MATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLA 242 (590)
T ss_dssp SEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEE
T ss_pred CceEEE-ecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEe
Confidence 445444 567999999999999888764 47777664
No 445
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=73.25 E-value=2.7 Score=37.57 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=30.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+++++++++-||.|+ ++|..|++.|.+|.++|-+..
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 46 (271)
T 3tzq_B 10 ENKVAIITGACGGIGL-----ETSRVLARAGARVVLADLPET 46 (271)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECTTS
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEcCCHH
Confidence 3578889998999886 577788899999999998754
No 446
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=73.23 E-value=1.8 Score=38.81 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=30.4
Q ss_pred hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|.+-.+++++++++-||.|+ ++|..|++.|.+|.++|-+.
T Consensus 23 m~~l~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~ 62 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGG-----AVVTALRAAGARVAVADRAV 62 (266)
T ss_dssp ---CTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEECSSCC
T ss_pred hhCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 44445678889999999986 57788889999999987654
No 447
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=73.15 E-value=3 Score=36.84 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=30.8
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
++++++++++-||.|+ ++|..|++.|.+|+++|-++.
T Consensus 6 ~~k~~lVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGA-----AVTRMLAQEGATVLGLDLKPP 42 (257)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence 4578889999999996 577888899999999998754
No 448
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=73.08 E-value=4.8 Score=39.69 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=27.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.+++-++|. -||||++.-++..|...|++|.++-.
T Consensus 108 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~~gs 142 (498)
T 1e8c_A 108 LRLVGVTGT--NGKTTTTQLLAQWSQLLGEISAVMGT 142 (498)
T ss_dssp SEEEEEESS--SCHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CeEEEEeCC--cChHHHHHHHHHHHHhCCCCEEEECC
Confidence 345544444 58999999999999999999988754
No 449
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=73.05 E-value=2.3 Score=37.51 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=30.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.++|-++
T Consensus 5 ~gk~vlVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 40 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGK-----AIAARLAADGATVIVSDINA 40 (247)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3578889998999997 57788889999999988764
No 450
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=73.03 E-value=2.2 Score=40.08 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=28.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.++++-|-=|+||||++..|+..+...+ + +++--.|.
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~~L~~~~-~-v~~trEPg 44 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMASAASGGS-P-TLYFPEPM 44 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGGCSS-C-EEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccCC-c-EEEEeCCC
Confidence 4678889999999999999999987643 3 44555554
No 451
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=72.85 E-value=2.7 Score=37.14 Aligned_cols=36 Identities=14% Similarity=0.366 Sum_probs=29.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
++++++++++-||.|+ ++|..|++.|.+|+++|-++
T Consensus 11 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 46 (252)
T 3f1l_A 11 NDRIILVTGASDGIGR-----EAAMTYARYGATVILLGRNE 46 (252)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3578889999999986 56778889999999998764
No 452
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=72.83 E-value=2.6 Score=36.86 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=29.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.+++-++
T Consensus 10 ~~k~vlITGasggiG~-----~la~~l~~~G~~V~~~~r~~ 45 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGL-----EICRAFAASGARLILIDREA 45 (254)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4568889988999986 56778888999999998764
No 453
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=72.72 E-value=2.2 Score=37.97 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=30.9
Q ss_pred cCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 24 ~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+-.+++++++++-||.|+ ++|..|++.|.+|.++|-++
T Consensus 7 ~l~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 44 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGR-----GIATVFARAGANVAVAGRST 44 (262)
T ss_dssp CCTTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 335678889998999987 46778889999999998764
No 454
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=72.66 E-value=2.2 Score=36.19 Aligned_cols=20 Identities=30% Similarity=0.142 Sum_probs=15.8
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSI 50 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~ 50 (365)
+++-|.+||||||+...+..
T Consensus 10 i~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 45558999999999887763
No 455
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=72.63 E-value=2.6 Score=37.82 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=30.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 9 ~gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~~~~ 44 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGR-----SHAVKLAEEGADIILFDICH 44 (287)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCeEEEEcccc
Confidence 4678889999999886 57888899999999999774
No 456
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=72.55 E-value=2.4 Score=38.09 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=29.0
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (365)
Q Consensus 25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD 63 (365)
-.+++++++++-||.|+ ++|..|++.|.+|+++|
T Consensus 29 l~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~ 62 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGR-----AIAHGYARAGAHVLAWG 62 (273)
T ss_dssp CTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEc
Confidence 35678889999999996 57888899999999998
No 457
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=72.48 E-value=2.5 Score=36.60 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=27.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
++++++++-||.|+ ++|..|++.|.+|.+++-++
T Consensus 2 k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 2 SLIVITGASSGLGA-----ELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp -CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 45788888999886 56778889999999998764
No 458
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.39 E-value=1.7 Score=33.87 Aligned_cols=31 Identities=52% Similarity=0.786 Sum_probs=27.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhcccc
Q 017873 333 TVEDLERRVSTLRQQLQEAEAELERLRKGKQ 363 (365)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (365)
...+++-.+..+.++|+++.+++|+||++.+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 3577888899999999999999999999875
No 459
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=72.33 E-value=3.3 Score=36.96 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=30.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
+++++++++-||.|+. +|..|++.|.+|.+++-++..
T Consensus 8 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~~ 44 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRA-----IAERFVDEGSKVIDLSIHDPG 44 (264)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESSCCC
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEecCccc
Confidence 5788899999999974 677888899999999887543
No 460
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=72.30 E-value=2 Score=36.30 Aligned_cols=71 Identities=8% Similarity=0.178 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhh
Q 017873 242 ERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHF 321 (365)
Q Consensus 242 ~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l 321 (365)
.++...+...++++. ++.|+.- -. +.. .+ ......+..+...+ ...+...|.......|.+.+...-.++
T Consensus 127 ~~~~~~~~~~~~~~~-~v~nK~D-~~--s~~----~~-~~~~~~~~~~~~~~-~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 127 QQMIEWAVDSNIAVL-VLLTKAD-KL--ASG----AR-KAQLNMVREAVLAF-NGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHTTCCEE-EEEECGG-GS--CHH----HH-HHHHHHHHHHHGGG-CSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeE-EEEeccc-CC--Cch----hH-HHHHHHHHHHHHhc-CCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 345666777787753 5679882 11 000 00 00011122222222 234556677777788877766665554
Q ss_pred c
Q 017873 322 V 322 (365)
Q Consensus 322 ~ 322 (365)
.
T Consensus 197 ~ 197 (210)
T 1pui_A 197 F 197 (210)
T ss_dssp H
T ss_pred H
Confidence 4
No 461
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=72.29 E-value=2.8 Score=37.20 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=29.8
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.++|-++
T Consensus 11 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 46 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGA-----AIARALDKAGATVAIADLDV 46 (263)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4578889999999997 46778888999999998764
No 462
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=72.29 E-value=3.3 Score=41.07 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=25.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D 65 (365)
+++.|..|+||||++-++|..+ +...+.+++.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~ 98 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA---RVPFITASGS 98 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEEehh
Confidence 6778999999999999998764 4556677653
No 463
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=72.29 E-value=2.2 Score=38.93 Aligned_cols=41 Identities=17% Similarity=0.442 Sum_probs=32.4
Q ss_pred hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
|.+-.+++++++++-||.|+ ++|..|++.|.+|.++|-+..
T Consensus 36 m~~l~~k~vlVTGas~GIG~-----aia~~la~~G~~V~~~~r~~~ 76 (293)
T 3rih_A 36 MFDLSARSVLVTGGTKGIGR-----GIATVFARAGANVAVAARSPR 76 (293)
T ss_dssp TTCCTTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred ccCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEECCHH
Confidence 33345678889998999887 567888899999999997753
No 464
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=72.27 E-value=2.9 Score=37.06 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.+++-++
T Consensus 8 ~~k~vlVTGas~giG~-----~ia~~l~~~G~~V~~~~r~~ 43 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGY-----GIVEELASLGASVYTCSRNQ 43 (260)
T ss_dssp TTCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3578889999999997 56778888999999998764
No 465
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=72.23 E-value=2.3 Score=43.11 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=29.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
..+++.|..|+||||++..+|..+.........++.++.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 356677999999999999999977655445667776654
No 466
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=72.14 E-value=1.2 Score=41.90 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=29.5
Q ss_pred EEEEEeCCCCCcHHHHH-HHHHHHHHHCCCCEEEEeCCCC
Q 017873 29 KWVFVGGKGGVGKTTCS-SILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~a-a~lA~~la~~G~rVLLiD~D~~ 67 (365)
.++++.|-=|+||||++ ..|+..+...|. +++.-.|.
T Consensus 13 ~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~--vv~trEPg 50 (341)
T 1osn_A 13 LRIYLDGAYGIGKTTAAEEFLHHFAITPNR--ILLIGEPL 50 (341)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTTTSGGG--EEEECCCH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCC
Confidence 46788999999999999 999888877773 55666653
No 467
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=71.99 E-value=3.2 Score=36.52 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=30.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+++++++++-||.|+. +|..|++.|.+|.+++-++.
T Consensus 7 ~k~vlVTGas~giG~~-----ia~~l~~~G~~V~~~~r~~~ 42 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYA-----TALAFVEAGAKVTGFDQAFT 42 (250)
T ss_dssp TCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCCC
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCchh
Confidence 5678899999999974 67788889999999987753
No 468
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=71.97 E-value=2.5 Score=44.53 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=24.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
.-+++.|..|+||||++.++|..+ +...+.+++
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~ 271 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANET---GAFFFLING 271 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEc
Confidence 346667999999999999987643 555666664
No 469
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=71.93 E-value=2.6 Score=34.27 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=15.4
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILS 49 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA 49 (365)
+++-|..|+||||+...+.
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4556899999999988774
No 470
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=71.92 E-value=3.1 Score=36.77 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=30.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+++++++++-||.|+ ++|..|++.|.+|.+++-++.
T Consensus 6 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~ 41 (256)
T 2d1y_A 6 GKGVLVTGGARGIGR-----AIAQAFAREGALVALCDLRPE 41 (256)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSTT
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence 567889999999997 477788889999999988764
No 471
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=71.85 E-value=2.9 Score=37.79 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=29.9
Q ss_pred hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
|.+-.+++++++++-||.|+ ++|..|++.|.+|.++|-+.
T Consensus 23 m~~~~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 62 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGR-----ATALALAADGVTVGALGRTR 62 (283)
T ss_dssp ----CCCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred hcCCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 44445678889999999986 46788889999999998764
No 472
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=71.80 E-value=3 Score=37.00 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=30.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.++|-++
T Consensus 7 ~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 42 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGL-----ATVRRLVEGGAEVLLTGRNE 42 (255)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4678889999999996 57888899999999998764
No 473
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=71.77 E-value=3.1 Score=37.45 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=32.7
Q ss_pred hcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (365)
Q Consensus 23 ~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~ 68 (365)
.+-.+++++++++-+|.|+ ++|..|++.|.+|.++|-++..
T Consensus 29 ~~l~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~~~ 69 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGA-----AIAEGLAGAGAHVILHGVKPGS 69 (275)
T ss_dssp HCCTTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEESSTTT
T ss_pred CCCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEcCCHHH
Confidence 3345678889988999986 4777888999999999987653
No 474
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=71.75 E-value=2.8 Score=36.78 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=30.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.++|-+.
T Consensus 8 ~~k~vlITGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 43 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQ-----AYAEALAREGAAVVVADINA 43 (253)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 4577889988999886 67888899999999998764
No 475
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=71.72 E-value=2.5 Score=34.26 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=24.1
Q ss_pred EEEEeec-CCcchHHHHHHHHHHHHhC----CCCcCeEEEcCc
Q 017873 226 TFVCVCI-PEFLSLYETERLVQELTKF----EIDTHNIIINQV 263 (365)
Q Consensus 226 ~~~lVt~-p~~~s~~et~~~~~~L~~~----gi~v~~vVvN~~ 263 (365)
.+++|.. .+..+.......+..+... ++|+ -+|.|+.
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pi-ilv~NK~ 121 (175)
T 2nzj_A 80 AYVIVYSIADRGSFESASELRIQLRRTHQADHVPI-ILVGNKA 121 (175)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHCC----CCE-EEEEECT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCE-EEEEECh
Confidence 4555444 3456677777777777765 6665 4889998
No 476
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=71.68 E-value=11 Score=38.31 Aligned_cols=38 Identities=8% Similarity=-0.109 Sum_probs=26.5
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
..+++|.....-...++...+..+...++|+ -+|+|+.
T Consensus 98 D~aILVVDa~~gv~~qt~~~~~~a~~~~ipi-IvviNKi 135 (600)
T 2ywe_A 98 EGALLLIDASQGIEAQTVANFWKAVEQDLVI-IPVINKI 135 (600)
T ss_dssp SEEEEEEETTTBCCHHHHHHHHHHHHTTCEE-EEEEECT
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHCCCCE-EEEEecc
Confidence 3566666654444456677777777889985 5889999
No 477
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=71.48 E-value=2.9 Score=38.04 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+++++++++-+|.|+ ++|..|++.|.+|+++|.++.
T Consensus 27 ~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~~~~~ 63 (299)
T 3t7c_A 27 EGKVAFITGAARGQGR-----SHAITLAREGADIIAIDVCKQ 63 (299)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCSC
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEecccc
Confidence 4578889999999996 578888999999999998743
No 478
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=71.36 E-value=3.2 Score=35.97 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=28.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+++++++++-||.|+ ++|..|+++|.+|.+++-++
T Consensus 2 ~k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (235)
T 3l77_A 2 MKVAVITGASRGIGE-----AIARALARDGYALALGARSV 36 (235)
T ss_dssp CCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 467888888888886 57778888999999998764
No 479
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=71.36 E-value=2.9 Score=37.58 Aligned_cols=36 Identities=28% Similarity=0.552 Sum_probs=30.2
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.++|-++
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 45 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGK-----GVAAGLVAAGASVMIVGRNP 45 (281)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4578889999999987 57788889999999998764
No 480
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=71.32 E-value=2.5 Score=36.97 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=30.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|+++|.+|++++-++
T Consensus 4 ~~k~vlITGas~gIG~-----~~a~~l~~~G~~v~~~~r~~ 39 (247)
T 3lyl_A 4 NEKVALVTGASRGIGF-----EVAHALASKGATVVGTATSQ 39 (247)
T ss_dssp TTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3568889998999986 57888889999999998874
No 481
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=71.30 E-value=4.1 Score=39.29 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=30.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--CEEEEeCCCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTDPAHN 69 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~--rVLLiD~D~~~~ 69 (365)
++.++.+++ ..|+||||++..+|..+++.+. .++++=.+.++.
T Consensus 173 rGQr~~IvG-~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~ 217 (422)
T 3ice_A 173 RGQRGLIVA-PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPE 217 (422)
T ss_dssp TTCEEEEEC-CSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHH
T ss_pred CCcEEEEec-CCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChH
Confidence 456777775 5689999999999999886543 344555565543
No 482
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=71.23 E-value=2.6 Score=33.94 Aligned_cols=38 Identities=26% Similarity=0.170 Sum_probs=23.0
Q ss_pred eEEEEeecC-CcchHHHHHHHHHHHHh---CCCCcCeEEEcCc
Q 017873 225 TTFVCVCIP-EFLSLYETERLVQELTK---FEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p-~~~s~~et~~~~~~L~~---~gi~v~~vVvN~~ 263 (365)
..+++|... +..+.......+..+.. .++|+ -+|.|+.
T Consensus 80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~ 121 (170)
T 1z08_A 80 NGAILVYDITDEDSFQKVKNWVKELRKMLGNEICL-CIVGNKI 121 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEE-EEEEECG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEECc
Confidence 456666654 44455666666666554 34554 4888998
No 483
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=71.22 E-value=3.4 Score=36.89 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=30.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+++++++++-||.|+. +|..|++.|.+|.+++-++.
T Consensus 33 ~~k~vlITGasggIG~~-----la~~L~~~G~~V~~~~r~~~ 69 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWA-----VAEAYAQAGADVAIWYNSHP 69 (279)
T ss_dssp TTCEEEETTTTSSHHHH-----HHHHHHHHTCEEEEEESSSC
T ss_pred CCCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCCHH
Confidence 45788899999999975 67778888999999987754
No 484
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=71.15 E-value=5 Score=40.25 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=33.5
Q ss_pred eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~ 263 (365)
+++++|..+..-....|+.+++.+.++++|+. +++|++
T Consensus 125 DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~ 162 (548)
T 3vqt_A 125 DSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKM 162 (548)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECT
T ss_pred CceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecc
Confidence 47788888877788899999999999999984 889999
No 485
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=71.15 E-value=3.3 Score=37.01 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=16.0
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 017873 30 WVFVGGKGGVGKTTCSSILS 49 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA 49 (365)
-+++-|+.|+||||+.-.+.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 45566899999999987765
No 486
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=71.10 E-value=2.9 Score=37.47 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=30.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|+++|-+.
T Consensus 29 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~Vi~~~r~~ 64 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGE-----ATVRRLHADGLGVVIADLAA 64 (281)
T ss_dssp TTEEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 5678889999999886 47788888999999998764
No 487
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=71.09 E-value=2.6 Score=37.28 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=29.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.+++-++
T Consensus 6 ~~k~~lVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 41 (250)
T 3nyw_A 6 QKGLAIITGASQGIGA-----VIAAGLATDGYRVVLIARSK 41 (250)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHHHTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 4577889999999996 57778888999999998764
No 488
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=70.93 E-value=3.1 Score=36.57 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=29.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
+++++++++-||.|+ ++|..|++.|.+|.+++-++
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 41 (249)
T 2ew8_A 7 DKLAVITGGANGIGR-----AIAERFAVEGADIAIADLVP 41 (249)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEcCCc
Confidence 567889988999997 46777888999999998876
No 489
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=70.90 E-value=3.1 Score=36.36 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
+++++++++-||.|+ ++|..|++.|.+|.+++-++.
T Consensus 2 ~k~vlVTGas~giG~-----~~a~~l~~~G~~V~~~~r~~~ 37 (239)
T 2ekp_A 2 ERKALVTGGSRGIGR-----AIAEALVARGYRVAIASRNPE 37 (239)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCH
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 357889988999997 567788889999999988764
No 490
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=70.78 E-value=3.1 Score=37.33 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
++++++++++-+|.|+. +|..|++.|.+|.++|-+.
T Consensus 6 ~gKvalVTGas~GIG~a-----iA~~la~~Ga~Vv~~~~~~ 41 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRA-----IAKKFALNDSIVVAVELLE 41 (254)
T ss_dssp TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEECCH
Confidence 36788899999999975 6788899999999999874
No 491
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=70.77 E-value=3 Score=35.22 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=24.0
Q ss_pred eEEEEeecC-CcchHHHHHHHHHHHHh----CCCCcCeEEEcCc
Q 017873 225 TTFVCVCIP-EFLSLYETERLVQELTK----FEIDTHNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p-~~~s~~et~~~~~~L~~----~gi~v~~vVvN~~ 263 (365)
..+++|... +..+..+....+..+.. .++|+ -+|.|+.
T Consensus 94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~ 136 (198)
T 1f6b_A 94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPI-LILGNKI 136 (198)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCE-EEEEECT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE-EEEEECC
Confidence 356666554 44567777666665543 46665 5889998
No 492
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=70.74 E-value=2.7 Score=33.51 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=15.1
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 017873 31 VFVGGKGGVGKTTCSSILSI 50 (365)
Q Consensus 31 ~~~sgKGGvGKTT~aa~lA~ 50 (365)
+++-|..|+||||+...+..
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 34457899999999776653
No 493
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=70.66 E-value=3 Score=37.58 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=30.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.++|-++
T Consensus 26 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 61 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGR-----ATAELFAKNGAYVVVADVNE 61 (277)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4578889998999887 57788889999999998764
No 494
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=70.64 E-value=2.7 Score=33.75 Aligned_cols=39 Identities=15% Similarity=0.051 Sum_probs=23.8
Q ss_pred eEEEEeecC-CcchHHHHHHHHHHHHhCCCCc--CeEEEcCc
Q 017873 225 TTFVCVCIP-EFLSLYETERLVQELTKFEIDT--HNIIINQV 263 (365)
Q Consensus 225 t~~~lVt~p-~~~s~~et~~~~~~L~~~gi~v--~~vVvN~~ 263 (365)
..+++|... +..+.......+..+...+.+- .-+|.|+.
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~ 121 (170)
T 1z0j_A 80 AAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECC
Confidence 456666654 4455666677777777654332 23667998
No 495
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=70.55 E-value=3.3 Score=36.49 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=30.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+. +|..|++.|.+|.+++-++
T Consensus 18 ~~k~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~~ 53 (249)
T 1o5i_A 18 RDKGVLVLAASRGIGRA-----VADVLSQEGAEVTICARNE 53 (249)
T ss_dssp TTCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEcCCH
Confidence 46788999999999975 6777888999999998765
No 496
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=70.38 E-value=4.8 Score=38.76 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=27.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (365)
Q Consensus 29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~ 64 (365)
+++-++|. -||||++.-++..|...|++|.++-.
T Consensus 40 ~vI~VtGT--nGKtTT~~~l~~iL~~~G~~vg~~~s 73 (428)
T 1jbw_A 40 RYIHVTGT--NGKGSAANAIAHVLEASGLTVGLYTS 73 (428)
T ss_dssp CEEEEECS--SCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred cEEEEECC--CChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 45544444 58999999999999999999998755
No 497
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=70.33 E-value=3.2 Score=36.87 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=29.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-||.|+ ++|..|++.|.+|.+++-++
T Consensus 6 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 41 (262)
T 1zem_A 6 NGKVCLVTGAGGNIGL-----ATALRLAEEGTAIALLDMNR 41 (262)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3568889999999997 47788889999999998764
No 498
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=70.32 E-value=4.1 Score=36.19 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~ 66 (365)
.+++++++++-+|.|+ ++|..|++.|.+|.++|-++
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 45 (264)
T 3ucx_A 10 TDKVVVISGVGPALGT-----TLARRCAEQGADLVLAARTV 45 (264)
T ss_dssp TTCEEEEESCCTTHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCcEEEEECCCcHHHH-----HHHHHHHHCcCEEEEEeCCH
Confidence 3568889999999996 57778889999999998764
No 499
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=70.21 E-value=2.9 Score=36.25 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (365)
Q Consensus 26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~ 67 (365)
.+++|+++++-||+|+ +++..|+++|++|.+++-++.
T Consensus 20 ~~~~ilVtGatG~iG~-----~l~~~L~~~G~~V~~~~R~~~ 56 (236)
T 3e8x_A 20 QGMRVLVVGANGKVAR-----YLLSELKNKGHEPVAMVRNEE 56 (236)
T ss_dssp -CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred CCCeEEEECCCChHHH-----HHHHHHHhCCCeEEEEECChH
Confidence 4678999999999997 456677788999999987753
No 500
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=70.21 E-value=2.3 Score=36.87 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCC
Q 017873 30 WVFVGGKGGVGKTTCSSILSILLAEVRP 57 (365)
Q Consensus 30 i~~~sgKGGvGKTT~aa~lA~~la~~G~ 57 (365)
++.+-|..|+||||+.-.++-.-...|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl~p~~G~ 51 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQALQSKQ 51 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcCCe
Confidence 4555799999999999999876224564
Done!