Query 017874
Match_columns 364
No_of_seqs 186 out of 448
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10941 hypothetical protein; 100.0 1.1E-52 2.4E-57 402.2 20.2 217 83-361 8-248 (269)
2 COG2912 Uncharacterized conser 100.0 5.6E-41 1.2E-45 318.1 15.5 214 86-361 12-248 (269)
3 PF13369 Transglut_core2: Tran 99.9 1.2E-24 2.5E-29 192.3 8.5 130 115-248 2-152 (152)
4 PF13371 TPR_9: Tetratricopept 98.5 1.6E-07 3.5E-12 71.3 6.1 55 307-361 7-62 (73)
5 PF13432 TPR_16: Tetratricopep 97.5 0.00027 5.8E-09 52.4 6.2 55 307-361 9-64 (65)
6 PF13414 TPR_11: TPR repeat; P 96.8 0.0028 6E-08 47.3 4.9 53 307-359 15-69 (69)
7 PF14559 TPR_19: Tetratricopep 96.3 0.0068 1.5E-07 44.9 4.5 54 307-360 3-57 (68)
8 PRK15359 type III secretion sy 95.9 0.023 5E-07 49.4 6.5 56 307-362 70-126 (144)
9 PF13512 TPR_18: Tetratricopep 95.8 0.023 5.1E-07 50.1 6.2 56 307-362 59-133 (142)
10 PRK11189 lipoprotein NlpI; Pro 95.3 0.045 9.8E-07 53.1 7.0 55 307-361 110-165 (296)
11 PRK15359 type III secretion sy 95.3 0.047 1E-06 47.4 6.3 57 306-362 35-92 (144)
12 PLN03088 SGT1, suppressor of 95.2 0.047 1E-06 54.7 6.7 56 307-362 48-104 (356)
13 PLN03088 SGT1, suppressor of 94.4 0.098 2.1E-06 52.4 6.6 56 307-362 14-70 (356)
14 PF13174 TPR_6: Tetratricopept 94.3 0.053 1.2E-06 34.2 3.1 30 332-361 4-33 (33)
15 cd00189 TPR Tetratricopeptide 94.3 0.13 2.9E-06 37.2 5.6 53 307-359 46-99 (100)
16 TIGR02552 LcrH_SycD type III s 94.0 0.16 3.5E-06 42.3 6.4 56 307-362 63-119 (135)
17 TIGR02795 tol_pal_ybgF tol-pal 93.9 0.19 4.1E-06 40.2 6.3 58 306-363 50-111 (119)
18 PF13431 TPR_17: Tetratricopep 93.7 0.059 1.3E-06 35.6 2.5 33 317-349 1-34 (34)
19 TIGR02795 tol_pal_ybgF tol-pal 93.3 0.34 7.3E-06 38.8 6.8 57 306-362 13-73 (119)
20 cd00189 TPR Tetratricopeptide 93.2 0.21 4.6E-06 36.2 5.1 54 308-361 13-67 (100)
21 PF13512 TPR_18: Tetratricopep 92.9 0.26 5.6E-06 43.5 6.0 57 306-362 21-81 (142)
22 PRK10866 outer membrane biogen 92.8 0.32 6.9E-06 46.2 6.9 57 306-362 43-103 (243)
23 PF07719 TPR_2: Tetratricopept 92.8 0.3 6.5E-06 30.9 4.8 33 329-361 2-34 (34)
24 PLN03098 LPA1 LOW PSII ACCUMUL 92.7 0.28 6E-06 50.8 6.7 51 307-357 87-141 (453)
25 COG5010 TadD Flp pilus assembl 92.5 0.27 5.8E-06 47.4 5.8 58 305-362 110-168 (257)
26 TIGR02552 LcrH_SycD type III s 92.4 0.32 6.9E-06 40.4 5.6 56 306-361 28-84 (135)
27 PRK11189 lipoprotein NlpI; Pro 92.2 0.39 8.5E-06 46.6 6.8 56 307-362 76-132 (296)
28 PRK12370 invasion protein regu 91.7 0.41 8.8E-06 50.6 6.7 54 307-360 350-404 (553)
29 TIGR03302 OM_YfiO outer membra 91.6 0.57 1.2E-05 42.9 6.9 56 307-362 45-104 (235)
30 PRK12370 invasion protein regu 91.4 0.41 8.8E-06 50.6 6.4 56 307-362 316-372 (553)
31 PRK10370 formate-dependent nit 91.4 0.58 1.3E-05 43.0 6.6 50 311-360 126-176 (198)
32 KOG0553 TPR repeat-containing 91.3 0.29 6.4E-06 48.1 4.8 65 290-361 83-148 (304)
33 PF13525 YfiO: Outer membrane 91.3 0.59 1.3E-05 42.8 6.6 57 306-362 16-76 (203)
34 PF03704 BTAD: Bacterial trans 91.3 1.4 2.9E-05 37.6 8.5 53 307-359 74-127 (146)
35 PRK10803 tol-pal system protei 91.2 0.6 1.3E-05 45.1 6.8 55 307-361 192-250 (263)
36 KOG0543 FKBP-type peptidyl-pro 90.9 0.91 2E-05 46.3 7.9 56 306-361 268-324 (397)
37 COG4105 ComL DNA uptake lipopr 90.7 0.55 1.2E-05 45.2 5.9 59 304-362 43-105 (254)
38 TIGR02521 type_IV_pilW type IV 90.6 0.88 1.9E-05 39.7 6.9 54 307-360 147-201 (234)
39 PF01841 Transglut_core: Trans 90.6 0.045 9.8E-07 44.5 -1.3 63 134-201 9-71 (113)
40 PF12895 Apc3: Anaphase-promot 90.3 0.42 9.1E-06 37.1 4.0 45 309-353 3-50 (84)
41 TIGR02521 type_IV_pilW type IV 90.1 0.99 2.2E-05 39.4 6.8 50 307-356 77-127 (234)
42 PF00515 TPR_1: Tetratricopept 89.9 0.88 1.9E-05 29.0 4.7 31 330-360 3-33 (34)
43 KOG1126 DNA-binding cell divis 89.4 0.68 1.5E-05 49.7 5.9 56 307-362 535-591 (638)
44 PF12895 Apc3: Anaphase-promot 89.3 0.33 7.1E-06 37.7 2.7 47 307-354 37-84 (84)
45 PRK10370 formate-dependent nit 89.3 1.1 2.3E-05 41.2 6.5 56 307-362 85-144 (198)
46 TIGR00990 3a0801s09 mitochondr 89.1 0.92 2E-05 48.3 6.8 55 307-361 411-466 (615)
47 cd05804 StaR_like StaR_like; a 88.7 0.99 2.2E-05 43.7 6.2 52 308-359 127-179 (355)
48 CHL00033 ycf3 photosystem I as 88.7 1.4 3E-05 38.6 6.6 54 307-360 47-104 (168)
49 PF13428 TPR_14: Tetratricopep 88.4 1.1 2.4E-05 30.8 4.6 30 331-360 4-33 (44)
50 PF13424 TPR_12: Tetratricopep 88.4 2.5 5.4E-05 31.9 7.1 51 308-358 18-76 (78)
51 PRK02603 photosystem I assembl 88.1 1.5 3.2E-05 38.7 6.4 55 307-361 47-105 (172)
52 PRK11447 cellulose synthase su 87.8 1.1 2.4E-05 51.5 6.8 55 307-361 473-528 (1157)
53 PRK15179 Vi polysaccharide bio 87.7 0.97 2.1E-05 49.5 5.9 56 307-362 98-154 (694)
54 TIGR00990 3a0801s09 mitochondr 87.6 1.4 3E-05 47.0 7.0 54 307-360 377-431 (615)
55 PRK09782 bacteriophage N4 rece 87.6 1.2 2.6E-05 50.7 6.7 56 307-362 655-711 (987)
56 PRK15174 Vi polysaccharide exp 86.0 1.8 4E-05 46.9 6.9 54 307-360 122-176 (656)
57 PRK11447 cellulose synthase su 85.9 1.6 3.6E-05 50.2 6.8 56 306-361 280-336 (1157)
58 PRK10049 pgaA outer membrane p 85.8 1.6 3.4E-05 48.1 6.4 57 307-363 405-462 (765)
59 PRK09782 bacteriophage N4 rece 85.7 1.7 3.7E-05 49.6 6.6 53 309-361 590-642 (987)
60 PRK15363 pathogenicity island 85.3 2.7 6E-05 37.7 6.5 52 307-358 81-133 (157)
61 COG4785 NlpI Lipoprotein NlpI, 85.2 0.7 1.5E-05 44.1 2.8 54 307-360 111-165 (297)
62 PRK10049 pgaA outer membrane p 84.3 2.3 4.9E-05 46.9 6.7 55 306-361 94-149 (765)
63 PRK11906 transcriptional regul 84.2 1.9 4.2E-05 44.8 5.7 56 307-362 316-372 (458)
64 PRK10803 tol-pal system protei 84.2 3.1 6.7E-05 40.2 6.9 55 308-362 156-214 (263)
65 PRK15174 Vi polysaccharide exp 84.1 2.4 5.2E-05 46.0 6.7 54 307-360 330-384 (656)
66 TIGR02917 PEP_TPR_lipo putativ 84.0 2.4 5.1E-05 45.1 6.5 54 307-360 34-88 (899)
67 TIGR00540 hemY_coli hemY prote 83.5 2.2 4.7E-05 43.2 5.8 52 306-357 164-216 (409)
68 TIGR00540 hemY_coli hemY prote 83.4 2.9 6.3E-05 42.3 6.7 56 306-361 310-370 (409)
69 PRK15179 Vi polysaccharide bio 83.1 2.5 5.3E-05 46.5 6.3 54 307-360 132-186 (694)
70 PF13428 TPR_14: Tetratricopep 83.1 1.3 2.8E-05 30.4 2.7 30 307-336 13-43 (44)
71 PRK10747 putative protoheme IX 83.0 3.4 7.3E-05 41.8 6.9 57 306-362 305-362 (398)
72 PF13414 TPR_11: TPR repeat; P 82.9 1.6 3.5E-05 32.1 3.5 35 328-362 3-37 (69)
73 PF13429 TPR_15: Tetratricopep 82.5 1.7 3.7E-05 41.2 4.3 59 302-360 187-246 (280)
74 PRK02603 photosystem I assembl 82.4 4 8.6E-05 36.0 6.4 54 307-360 84-152 (172)
75 TIGR02917 PEP_TPR_lipo putativ 82.3 3.6 7.7E-05 43.8 7.1 53 308-360 206-259 (899)
76 TIGR03302 OM_YfiO outer membra 81.9 2.8 6.1E-05 38.3 5.4 56 307-362 82-149 (235)
77 PRK15363 pathogenicity island 81.6 4.3 9.2E-05 36.5 6.2 56 307-362 47-103 (157)
78 KOG4626 O-linked N-acetylgluco 80.6 4.5 9.8E-05 43.9 6.9 62 301-362 290-354 (966)
79 PLN02789 farnesyltranstransfer 80.4 3.9 8.3E-05 40.6 6.1 50 310-359 52-103 (320)
80 PRK11788 tetratricopeptide rep 80.2 4.2 9.1E-05 39.8 6.3 55 307-361 261-315 (389)
81 PF13429 TPR_15: Tetratricopep 80.0 1.8 4E-05 40.9 3.6 50 307-356 226-276 (280)
82 PF13181 TPR_8: Tetratricopept 79.8 4.9 0.00011 25.3 4.5 30 331-360 4-33 (34)
83 PRK11788 tetratricopeptide rep 78.9 5.3 0.00011 39.1 6.5 56 307-362 226-283 (389)
84 KOG0548 Molecular co-chaperone 78.7 4.3 9.3E-05 42.9 6.0 54 307-360 370-424 (539)
85 smart00028 TPR Tetratricopepti 78.4 4 8.8E-05 23.4 3.6 30 331-360 4-33 (34)
86 PRK10866 outer membrane biogen 78.4 5.9 0.00013 37.6 6.5 56 307-362 81-158 (243)
87 CHL00033 ycf3 photosystem I as 77.8 7.9 0.00017 33.8 6.7 47 307-353 84-138 (168)
88 PRK10747 putative protoheme IX 76.3 5 0.00011 40.5 5.6 51 306-356 164-215 (398)
89 KOG0553 TPR repeat-containing 75.1 4.9 0.00011 39.7 5.0 54 308-361 128-182 (304)
90 PF12688 TPR_5: Tetratrico pep 75.1 13 0.00028 31.7 7.0 45 307-351 50-98 (120)
91 KOG4626 O-linked N-acetylgluco 75.0 5.6 0.00012 43.2 5.6 61 303-363 221-287 (966)
92 KOG4234 TPR repeat-containing 74.2 6.5 0.00014 37.2 5.3 54 307-360 146-200 (271)
93 COG4783 Putative Zn-dependent 72.5 8.5 0.00019 40.3 6.2 57 306-362 351-408 (484)
94 PLN03098 LPA1 LOW PSII ACCUMUL 71.1 6.3 0.00014 41.1 4.9 39 324-362 70-109 (453)
95 PF13525 YfiO: Outer membrane 71.0 8.5 0.00018 35.1 5.3 56 307-362 54-124 (203)
96 PF07079 DUF1347: Protein of u 70.6 7.7 0.00017 40.6 5.3 46 307-352 474-519 (549)
97 KOG1173 Anaphase-promoting com 68.1 12 0.00027 39.9 6.3 55 307-361 467-522 (611)
98 PF09295 ChAPs: ChAPs (Chs5p-A 67.5 9.5 0.0002 39.2 5.3 49 306-354 245-294 (395)
99 PLN02789 farnesyltranstransfer 67.4 13 0.00028 36.9 6.1 44 313-356 126-170 (320)
100 PF11846 DUF3366: Domain of un 67.3 17 0.00036 32.8 6.4 54 306-359 122-175 (193)
101 KOG0624 dsRNA-activated protei 66.7 6.5 0.00014 40.0 3.8 60 301-360 78-138 (504)
102 PF13432 TPR_16: Tetratricopep 66.4 4.6 9.9E-05 29.3 2.1 29 333-361 2-30 (65)
103 PRK10153 DNA-binding transcrip 66.2 15 0.00033 38.9 6.7 54 307-360 432-485 (517)
104 PRK11906 transcriptional regul 65.4 14 0.0003 38.7 6.0 53 308-360 351-404 (458)
105 smart00460 TGc Transglutaminas 65.1 4 8.8E-05 30.0 1.6 26 176-201 1-26 (68)
106 KOG0550 Molecular chaperone (D 64.1 8.9 0.00019 39.7 4.2 70 288-357 280-350 (486)
107 COG2956 Predicted N-acetylgluc 63.9 14 0.0003 37.2 5.5 57 307-363 226-284 (389)
108 KOG1128 Uncharacterized conser 63.9 11 0.00025 41.3 5.2 56 307-362 497-553 (777)
109 PF13176 TPR_7: Tetratricopept 63.4 3.3 7.2E-05 27.2 0.7 26 307-332 11-36 (36)
110 KOG1125 TPR repeat-containing 62.4 13 0.00028 39.7 5.2 33 164-197 281-313 (579)
111 PRK14574 hmsH outer membrane p 62.2 15 0.00032 41.3 5.9 53 308-360 115-168 (822)
112 KOG3364 Membrane protein invol 61.1 13 0.00028 33.0 4.1 54 307-361 47-104 (149)
113 KOG3785 Uncharacterized conser 60.3 17 0.00037 37.2 5.4 54 310-363 166-220 (557)
114 COG4235 Cytochrome c biogenesi 59.9 27 0.00057 34.5 6.5 55 307-361 205-260 (287)
115 COG3063 PilF Tfp pilus assembl 58.7 18 0.0004 34.7 5.0 58 303-360 147-205 (250)
116 COG3071 HemY Uncharacterized e 58.5 21 0.00045 36.6 5.7 60 300-359 299-359 (400)
117 PF14561 TPR_20: Tetratricopep 57.6 21 0.00046 28.7 4.6 47 314-360 7-54 (90)
118 COG4105 ComL DNA uptake lipopr 56.7 23 0.0005 34.3 5.4 56 307-362 83-150 (254)
119 KOG1126 DNA-binding cell divis 52.0 12 0.00025 40.6 2.9 55 309-363 469-524 (638)
120 PRK14574 hmsH outer membrane p 51.1 28 0.0006 39.2 5.7 53 307-361 80-135 (822)
121 KOG1156 N-terminal acetyltrans 49.4 27 0.00059 38.0 5.1 44 307-350 87-131 (700)
122 PF14853 Fis1_TPR_C: Fis1 C-te 49.3 21 0.00045 26.1 3.0 22 307-328 13-34 (53)
123 COG3071 HemY Uncharacterized e 48.7 34 0.00073 35.1 5.4 53 303-355 161-214 (400)
124 PF12569 NARP1: NMDA receptor- 48.4 42 0.00091 35.7 6.3 49 307-355 206-255 (517)
125 PF14853 Fis1_TPR_C: Fis1 C-te 47.7 33 0.00072 25.0 3.9 27 334-360 7-33 (53)
126 PF12688 TPR_5: Tetratrico pep 46.9 54 0.0012 27.9 5.7 53 308-360 14-70 (120)
127 KOG0547 Translocase of outer m 46.2 17 0.00038 38.4 3.0 60 303-362 368-428 (606)
128 COG1305 Transglutaminase-like 46.1 77 0.0017 29.7 7.3 73 118-201 142-214 (319)
129 KOG0624 dsRNA-activated protei 45.9 42 0.00092 34.3 5.5 55 307-361 319-374 (504)
130 PRK10941 hypothetical protein; 45.9 6.7 0.00014 38.1 -0.1 48 286-361 166-214 (269)
131 COG4783 Putative Zn-dependent 45.6 43 0.00093 35.3 5.7 57 307-363 318-375 (484)
132 PF12862 Apc5: Anaphase-promot 45.4 40 0.00087 26.9 4.5 55 304-358 7-71 (94)
133 COG3063 PilF Tfp pilus assembl 45.3 59 0.0013 31.3 6.1 57 305-361 45-102 (250)
134 KOG3060 Uncharacterized conser 45.1 65 0.0014 31.6 6.5 50 310-360 101-152 (289)
135 PRK10153 DNA-binding transcrip 44.9 75 0.0016 33.7 7.6 62 299-360 388-452 (517)
136 PF12569 NARP1: NMDA receptor- 44.6 61 0.0013 34.5 6.8 55 307-361 16-71 (517)
137 KOG2053 Mitochondrial inherita 44.2 31 0.00067 38.8 4.7 60 295-354 9-69 (932)
138 PF09976 TPR_21: Tetratricopep 43.6 68 0.0015 27.2 5.9 44 308-351 61-108 (145)
139 PF13374 TPR_10: Tetratricopep 43.4 47 0.001 21.2 3.9 26 332-357 6-31 (42)
140 PF07721 TPR_4: Tetratricopept 42.2 47 0.001 20.1 3.4 23 330-352 3-25 (26)
141 KOG1125 TPR repeat-containing 40.9 45 0.00097 35.8 5.1 54 307-360 297-351 (579)
142 PF13176 TPR_7: Tetratricopept 40.6 51 0.0011 21.4 3.7 24 332-355 3-26 (36)
143 KOG2076 RNA polymerase III tra 40.4 65 0.0014 36.3 6.3 55 307-361 219-274 (895)
144 cd05804 StaR_like StaR_like; a 39.3 68 0.0015 30.9 5.9 54 308-361 93-147 (355)
145 PRK14720 transcript cleavage f 38.8 73 0.0016 36.3 6.6 49 310-359 131-180 (906)
146 PF09976 TPR_21: Tetratricopep 38.6 94 0.002 26.3 6.0 56 306-361 22-81 (145)
147 KOG4642 Chaperone-dependent E3 38.0 40 0.00086 32.8 3.8 54 308-361 23-77 (284)
148 KOG0548 Molecular co-chaperone 37.9 51 0.0011 35.1 4.9 57 307-363 336-393 (539)
149 KOG4234 TPR repeat-containing 37.8 65 0.0014 30.7 5.1 53 307-359 107-165 (271)
150 KOG3060 Uncharacterized conser 37.4 1.1E+02 0.0025 29.9 6.8 56 308-363 65-121 (289)
151 PRK15180 Vi polysaccharide bio 36.6 61 0.0013 34.6 5.1 51 306-356 300-351 (831)
152 PF13424 TPR_12: Tetratricopep 35.4 68 0.0015 23.8 4.2 28 330-357 7-34 (78)
153 COG4259 Uncharacterized protei 34.9 49 0.0011 28.0 3.4 36 328-363 72-107 (121)
154 PRK15331 chaperone protein Sic 33.6 1.4E+02 0.003 27.1 6.4 50 307-356 49-99 (165)
155 PRK10992 iron-sulfur cluster r 33.5 2E+02 0.0042 27.1 7.7 31 19-59 21-52 (220)
156 COG4235 Cytochrome c biogenesi 32.8 1.4E+02 0.0029 29.6 6.7 55 307-361 134-189 (287)
157 TIGR02561 HrpB1_HrpK type III 30.8 85 0.0018 28.2 4.5 58 303-360 18-76 (153)
158 KOG2796 Uncharacterized conser 28.8 88 0.0019 31.0 4.5 58 306-363 263-321 (366)
159 KOG0495 HAT repeat protein [RN 27.6 1.6E+02 0.0035 32.7 6.6 57 307-363 731-788 (913)
160 PF04405 ScdA_N: Domain of Unk 27.3 51 0.0011 24.4 2.1 33 19-61 18-51 (56)
161 KOG0547 Translocase of outer m 27.2 1.1E+02 0.0024 32.7 5.2 54 309-362 408-462 (606)
162 PF02184 HAT: HAT (Half-A-TPR) 27.0 94 0.002 20.6 3.1 23 310-332 2-24 (32)
163 smart00386 HAT HAT (Half-A-TPR 26.3 1.3E+02 0.0029 17.7 3.7 28 309-336 1-29 (33)
164 KOG4648 Uncharacterized conser 25.8 93 0.002 31.9 4.2 46 307-352 109-155 (536)
165 PF04733 Coatomer_E: Coatomer 25.3 1.1E+02 0.0024 29.9 4.6 59 303-361 209-269 (290)
166 PF09613 HrpB1_HrpK: Bacterial 25.3 2.5E+02 0.0053 25.4 6.5 57 304-360 19-76 (160)
167 COG2345 Predicted transcriptio 25.2 4.6E+02 0.01 24.9 8.6 112 76-199 75-190 (218)
168 KOG1310 WD40 repeat protein [G 25.1 1.1E+02 0.0024 33.0 4.8 58 298-359 418-476 (758)
169 KOG1155 Anaphase-promoting com 25.0 2.2E+02 0.0048 30.3 6.9 51 308-358 445-496 (559)
170 COG1729 Uncharacterized protei 25.0 95 0.0021 30.2 4.1 34 331-364 144-177 (262)
171 PF13371 TPR_9: Tetratricopept 24.5 91 0.002 22.6 3.1 28 335-362 2-29 (73)
172 COG1729 Uncharacterized protei 24.3 2.2E+02 0.0047 27.8 6.3 56 307-362 190-249 (262)
173 KOG1174 Anaphase-promoting com 24.0 1.4E+02 0.003 31.4 5.2 49 307-355 312-361 (564)
174 PF04910 Tcf25: Transcriptiona 23.9 1.4E+02 0.0031 30.1 5.3 45 302-346 110-157 (360)
175 PF14559 TPR_19: Tetratricopep 22.9 89 0.0019 22.3 2.8 24 338-361 1-24 (68)
176 KOG4555 TPR repeat-containing 22.7 2.4E+02 0.0051 25.3 5.7 50 307-356 89-143 (175)
177 PF10516 SHNi-TPR: SHNi-TPR; 22.3 1.5E+02 0.0032 20.2 3.5 25 334-358 7-31 (38)
178 KOG2076 RNA polymerase III tra 21.3 2.3E+02 0.005 32.2 6.5 54 307-360 185-239 (895)
179 COG5010 TadD Flp pilus assembl 21.3 1.8E+02 0.0039 28.3 5.1 48 307-354 146-194 (257)
180 PF14938 SNAP: Soluble NSF att 20.7 3E+02 0.0066 26.2 6.7 52 309-360 129-187 (282)
181 KOG0495 HAT repeat protein [RN 20.6 1.3E+02 0.0029 33.3 4.4 54 308-361 664-718 (913)
182 PF11691 DUF3288: Protein of u 20.5 2E+02 0.0043 23.6 4.4 45 314-358 11-58 (90)
183 KOG1127 TPR repeat-containing 20.5 1.7E+02 0.0037 33.9 5.3 54 307-360 14-69 (1238)
184 KOG2796 Uncharacterized conser 20.3 2.9E+02 0.0063 27.5 6.3 48 307-354 189-238 (366)
No 1
>PRK10941 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-52 Score=402.22 Aligned_cols=217 Identities=19% Similarity=0.180 Sum_probs=191.4
Q ss_pred cCCCCcHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCccCCCC
Q 017874 83 INKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNAR 162 (364)
Q Consensus 83 ~~~~~dL~~aAL~IA~~~~p~~~~~~v~ldv~~~~~~Ld~La~ev~~~l~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~ 162 (364)
++++++|.+|||+||++.+| ++|++++.++||+|+.+++.. ++...++.+++++||++||++|||+||++
T Consensus 8 ~~~~~~L~e~al~ia~~~~p-------dl~~~~~~~~L~~l~~~~~~~--l~~~~~~~~~l~~L~~~fy~~lgF~Gn~~- 77 (269)
T PRK10941 8 EFNKAPLCEGMILASQAIRR-------DFPSQDVYDELERLVSLAREE--ISQLLPQDEQLEKLIALFYGEWGFGGASG- 77 (269)
T ss_pred cccCccHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHh--ccccCCHHHHHHHHHHHHHHHhCCCCCcc-
Confidence 48899999999999999999 999999999999999999988 78889999999999999999999999999
Q ss_pred CCcCCcccccHHHHHhhccCChHHHHHHHHHHHHHhCCc--cc--------------------cCCCCeeeccccccccc
Q 017874 163 NQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GL--------------------IDFDVEISFPLDLYSLP 220 (364)
Q Consensus 163 ~~Y~dp~Ns~L~~VLe~R~GiPIsL~iIylevArRLglp--Gv--------------------~~f~G~i~~p~d~~~l~ 220 (364)
+||+|+|||||+||++|+|+|||||+||++||+|+|+| || ++|+|+++.+++|....
T Consensus 78 -~Y~~p~ns~L~~VL~~R~G~PisL~il~l~iA~~lglp~~gV~fPghfllr~~~~d~~~~~IDPf~G~~L~~~~l~~~L 156 (269)
T PRK10941 78 -VYRLSDALWLDKVLKTRQGSAVSLGAILLWIANRLDLPLMPVIFPTQLILRADWLDGEMWLINPFNGETLDEHTLEVWL 156 (269)
T ss_pred -ccCCchhhHHHHHHHccCCCcHHHHHHHHHHHHHcCCCeeeeecCchheeeeecCCCceEEEeCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999 66 22334444444443322
Q ss_pred ccccCC-CCCCCCCCCCCChHHHHHHHHHHHHHhccccccccchhhHHHHHHHhhhhhhccCCCchhhhhhHHHhhhhhh
Q 017874 221 RGYQKQ-KSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLE 299 (364)
Q Consensus 221 ~~~~~~-~~~~~~~~~~~s~r~IL~RmL~NLK~~y~~~~~~~~~~l~l~a~~~a~~~~~~~~~~~~~~~~~~~~a~~rl~ 299 (364)
+++.++ ....++.+.+++|++|+.|||+|||.+|++++
T Consensus 157 ~~~~g~~~~l~~~~L~~a~~~~il~Rml~nLK~~~~~~~----------------------------------------- 195 (269)
T PRK10941 157 KGNISPSAELFNEDLDEADNIEVIRKLLDTLKAALMEEK----------------------------------------- 195 (269)
T ss_pred HhhcCCcccCCHHHcCCCCHHHHHHHHHHHHHHHHHHcC-----------------------------------------
Confidence 333333 22344567889999999999999999997765
Q ss_pred hccccccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 300 RGVWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 300 ~~~~~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+|++||+|+||++.+.| ||+|+||||++|+|+||++.|+.||++|++++|+-
T Consensus 196 ----------~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 196 ----------QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred ----------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 99999999999999999 79999999999999999999999999999999974
No 2
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.6e-41 Score=318.14 Aligned_cols=214 Identities=25% Similarity=0.315 Sum_probs=182.4
Q ss_pred CCcHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCccCCCCCCc
Q 017874 86 CVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQL 165 (364)
Q Consensus 86 ~~dL~~aAL~IA~~~~p~~~~~~v~ldv~~~~~~Ld~La~ev~~~l~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~Y 165 (364)
...+.++++++|+..+| ++|......+++.+++.++++ ++....+++++++++++||++|||+||.+ .|
T Consensus 12 ~~~~~e~~l~~a~~~~~-------~~dp~~~~~~l~~lV~~a~~~--i~~~~~~~~~~~~l~~~fy~d~gF~~~~~--~y 80 (269)
T COG2912 12 EAPLKEGALLAAQAIRP-------DLDPARLLNELDRLVRLARKR--ISELLPQEEQLEALLRLFYGDWGFSGDEE--DY 80 (269)
T ss_pred hccchhHHHHHHHHhCc-------CCCHHHHHHHHHHHHHHHHHH--hhhccChhhHHHHHHHHHHHHcCCCCCcc--cc
Confidence 34466779999999999 999999999999999999988 77778889999999999999999999999 99
Q ss_pred CCcccccHHHHHhhccCChHHHHHHHHHHHHHhCCc--cc-------------------cCCCCeeeccccccccccccc
Q 017874 166 IEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GL-------------------IDFDVEISFPLDLYSLPRGYQ 224 (364)
Q Consensus 166 ~dp~Ns~L~~VLe~R~GiPIsL~iIylevArRLglp--Gv-------------------~~f~G~i~~p~d~~~l~~~~~ 224 (364)
++|+|+|+++|+++|+|+||+||+||+++|+++|+| || ++|+|++...++++....+.+
T Consensus 81 ~~~~n~~l~~Vl~~R~G~pvsLa~vll~ia~~l~lpl~gV~FP~~flLR~~~~~~~~~idP~ng~~l~~~~l~~~l~~~~ 160 (269)
T COG2912 81 FDPRNLYLNQVLQRRQGIPVSLAVVLLEIARRLDLPLYGVNFPTQLLLRAEVEDEPLLIDPFNGGTLSQHELQEWLKGTI 160 (269)
T ss_pred cCchhhhHHHHHHHcCCCcchHHHHHHHHHHHcCCCCCccCCccceeEeeccCCCceeeCCCCCCcccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999 65 123333333333332112222
Q ss_pred CCC-CCCCCCCCCCChHHHHHHHHHHHHHhccccccccchhhHHHHHHHhhhhhhccCCCchhhhhhHHHhhhhhhhccc
Q 017874 225 KQK-SKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGVW 303 (364)
Q Consensus 225 ~~~-~~~~~~~~~~s~r~IL~RmL~NLK~~y~~~~~~~~~~l~l~a~~~a~~~~~~~~~~~~~~~~~~~~a~~rl~~~~~ 303 (364)
.+. ......+...++++|+.||++|||.+|+.++
T Consensus 161 ~~~ael~~~~L~~a~~~~il~rll~~lk~~~~~e~--------------------------------------------- 195 (269)
T COG2912 161 GPSAELLPEDLKQASNREILSRLLRNLKAALLREL--------------------------------------------- 195 (269)
T ss_pred CcHhhhhhhhhhhccHHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 221 1223345567999999999999999997765
Q ss_pred cccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 304 NSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 304 ~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+|++|+++++|++.++| ||+|+||||++|+|+||++.|++||++|++++|+-
T Consensus 196 ------~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 196 ------QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred ------chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 99999999999999999 89999999999999999999999999999999984
No 3
>PF13369 Transglut_core2: Transglutaminase-like superfamily
Probab=99.91 E-value=1.2e-24 Score=192.29 Aligned_cols=130 Identities=23% Similarity=0.389 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCccCCCCCCcCCcccccHHHHHhhccCChHHHHHHHHHH
Q 017874 115 ALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEI 194 (364)
Q Consensus 115 ~~~~~Ld~La~ev~~~l~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~Y~dp~Ns~L~~VLe~R~GiPIsL~iIylev 194 (364)
++.++||+||.++++. ++...+|.+++++|+++||+++||+|+.. +|++|+|++|++||++|+|+||+||+||++|
T Consensus 2 ~~~~~Ld~la~~v~~~--~~~~~~~~~~l~al~~~l~~~~gF~~~~~--~y~~~~n~~l~~vL~~r~G~Pi~L~ily~~v 77 (152)
T PF13369_consen 2 AVLQRLDALAAQVRQR--LPARASPREKLEALNDVLYQELGFSGNSE--NYYDPENSFLHKVLERRRGIPISLAILYLEV 77 (152)
T ss_pred hHHHHHHHHHHHHHHH--ccccCCHHHHHHHHHHHHHHHcCCCCCcc--ccCChHhhhHHHHHhcCCCCcHHHHHHHHHH
Confidence 5789999999999998 77888999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhCCc-cccCCCCeeec-----------ccc-ccccc--------ccccCCCCCCCCCCCCCChHHHHHHHHH
Q 017874 195 LKMLRIW-GLIDFDVEISF-----------PLD-LYSLP--------RGYQKQKSKDSDQPHIITVQMLLEEILR 248 (364)
Q Consensus 195 ArRLglp-Gv~~f~G~i~~-----------p~d-~~~l~--------~~~~~~~~~~~~~~~~~s~r~IL~RmL~ 248 (364)
|+|+|++ -...|+|+++. |.+ |..+. .....+....+..+.++++++|+.||+|
T Consensus 78 a~rlGl~~~~v~~Pgh~l~r~~~~~~~~iDpf~~G~~l~~~~l~~~l~~~~~~~~~~~~~l~p~s~~eil~R~l~ 152 (152)
T PF13369_consen 78 ARRLGLPAEPVNFPGHFLVRVRSDGEFYIDPFNGGRLLSREELERLLSRMGGPAELDPEYLKPASPREILLRMLR 152 (152)
T ss_pred HHHcCCeEEEEecCCEEEEEEecCCcEEEccCCCCccCCHHHHHHHHHhccCcccCCHHHhCCCCHHHHHHHHhC
Confidence 9999999 33345555544 233 21121 1111111112234567899999999985
No 4
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.55 E-value=1.6e-07 Score=71.27 Aligned_cols=55 Identities=24% Similarity=0.213 Sum_probs=51.9
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+.++|+.|+.++|+++.++| ++..++++|.+++++|+|++|+.+|+.+++..|+.
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 45699999999999999999 68899999999999999999999999999999975
No 5
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00027 Score=52.44 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=50.3
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
..|+++.|+.+.+.++...|+ +.-+..+|.++++.|++.+|+..++.+++..|++
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 567999999999999999995 7799999999999999999999999999999986
No 6
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.75 E-value=0.0028 Score=47.29 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=48.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcC-ChHHHHHHHHHHHHHhc
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCG-LYEQSLQYLKFYQAQWY 359 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg-~~~~A~~dL~~fl~~~~ 359 (364)
..|+++.|+.+.++.+.++| ++.-+--+|.++.++| .+.+|+++++..++.-|
T Consensus 15 ~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 15 QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46799999999999999999 5778999999999999 79999999999998766
No 7
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.28 E-value=0.0068 Score=44.90 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=49.0
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..|+++.|+...+.++..+| ++.-+..+|.+|++.|++++|..-|+..+...|+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46799999999999999999 5778889999999999999999999999988887
No 8
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.87 E-value=0.023 Score=49.36 Aligned_cols=56 Identities=9% Similarity=0.069 Sum_probs=51.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
..|+++.|+.+.++.+.++| ++.-+--+|.++.++|++.+|+..+...++..|+.+
T Consensus 70 ~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 70 MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 57899999999999999999 688899999999999999999999999999998763
No 9
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.81 E-value=0.023 Score=50.07 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=51.7
Q ss_pred CcCCHHHHHHHHHHHhccCC-C---hHHHHHHhHHHHHcCC---------------hHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-D---AKELRDYSILLYHCGL---------------YEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-d---p~e~RDrGlLl~~lg~---------------~~~A~~dL~~fl~~~~~~~ 362 (364)
..++++.|+++.||.+.|+| + ++-.--+||.+++.+. ...|..+|+.++.++|||.
T Consensus 59 ~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 59 KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 57799999999999999999 6 4688999999999988 9999999999999999985
No 10
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.35 E-value=0.045 Score=53.12 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=51.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
..|+++.|+.+.++.+.++| ++.-+.-+|.++++.|++++|+++++.+++..|+.
T Consensus 110 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 67899999999999999999 46788999999999999999999999999998875
No 11
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.30 E-value=0.047 Score=47.41 Aligned_cols=57 Identities=9% Similarity=0.002 Sum_probs=52.1
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
...|+++.|+.++++++.++| ++.-+..+|.++...|++++|...++.-++..|+.+
T Consensus 35 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 357899999999999999999 577899999999999999999999999999888754
No 12
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.17 E-value=0.047 Score=54.66 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=51.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
..|+++.|+..+++++.++| ++.-+.-+|.+|+++|+|++|+..++..++..|+..
T Consensus 48 ~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 48 KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 56899999999999999999 577788899999999999999999999999988753
No 13
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.35 E-value=0.098 Score=52.40 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=51.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
..|+++.|+.+.+..+.++| ++..+..+|.+|.++|++.+|+.+++.-++..|+..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~ 70 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA 70 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 56799999999999999999 577899999999999999999999999999988753
No 14
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.34 E-value=0.053 Score=34.22 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=28.0
Q ss_pred HHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 332 RDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 332 RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
--.|.+++..|.+.+|+..++.+++.+|+|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 457999999999999999999999999997
No 15
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.25 E-value=0.13 Score=37.24 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=35.9
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY 359 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~ 359 (364)
..++++.|+.+.++.+.+.| ++..+...|.++...|++..|...++..++..|
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 46 KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 44667777777777777776 455666777777777777777777666665554
No 16
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.04 E-value=0.16 Score=42.27 Aligned_cols=56 Identities=16% Similarity=0.069 Sum_probs=50.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
..|++..|+.+.++.+.++| ++.-+.-+|.++.+.|+++.|+..++..++..|+..
T Consensus 63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 56799999999999999999 577888899999999999999999999999988764
No 17
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.88 E-value=0.19 Score=40.24 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=51.3
Q ss_pred cCcCCHHHHHHHHHHHhccCCC----hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 306 VRFGDMRCALAACERLILLESD----AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~Pd----p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
...|+++.|+...+.++...|+ +.-+--.|.++.+.|.+.+|...++..++..|++..
T Consensus 50 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 50 YAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 3678999999999999999984 345788899999999999999999999999998753
No 18
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.72 E-value=0.059 Score=35.63 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=29.2
Q ss_pred HHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHH
Q 017874 317 ACERLILLES-DAKELRDYSILLYHCGLYEQSLQ 349 (364)
Q Consensus 317 a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~ 349 (364)
++++.|.++| ++.-+.-+|.+|...|++++|.+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3678899999 67899999999999999999963
No 19
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.30 E-value=0.34 Score=38.75 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=50.3
Q ss_pred cCcCCHHHHHHHHHHHhccCCC-h---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 306 VRFGDMRCALAACERLILLESD-A---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~Pd-p---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
.+.|+++.|+..++.++...|+ + .....+|.++++.|.+..|...++.++...|++.
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 3568999999999999999984 3 3577899999999999999999999999998863
No 20
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=93.20 E-value=0.21 Score=36.16 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
.|+++.|+...+..+.+.| ++..+..+|.++.+.|.++.|...++..++..|..
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4699999999999999999 56788999999999999999999999988877654
No 21
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.94 E-value=0.26 Score=43.52 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=52.0
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChH---HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 306 VRFGDMRCALAACERLILLES-DAK---ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
+..|+|..|....|.|..--| .++ -..+.|..||..|.|.+|+..++.|++..|+|.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 467899999999999999999 554 689999999999999999999999999999984
No 22
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=92.84 E-value=0.32 Score=46.25 Aligned_cols=57 Identities=11% Similarity=-0.074 Sum_probs=51.1
Q ss_pred cCcCCHHHHHHHHHHHhccCCC-hH---HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 306 VRFGDMRCALAACERLILLESD-AK---ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~Pd-p~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
+..|++..|....+.++...|+ ++ ..-+.|.++++.+.|.+|+..++.|++..|++.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 3578999999999999999994 44 347999999999999999999999999999984
No 23
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.84 E-value=0.3 Score=30.92 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=28.8
Q ss_pred HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 329 KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 329 ~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
.-+..+|.+++++|+|.+|+..++..++..|+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457789999999999999999999999999874
No 24
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.69 E-value=0.28 Score=50.84 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=46.4
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hH---HHHHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLESD-AK---ELRDYSILLYHCGLYEQSLQYLKFYQAQ 357 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~ 357 (364)
..|+++.|+.++++.|.++|+ +. .+.-+|.+|.++|++++|+++|+..++.
T Consensus 87 ~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 87 SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357999999999999999995 43 4999999999999999999999999986
No 25
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=92.48 E-value=0.27 Score=47.39 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=53.4
Q ss_pred ccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 305 SVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 305 ~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
.++.|++..|+....++..+.| |+..+=+.|..|-++|++.+|...+..-++..||..
T Consensus 110 ~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 110 QIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168 (257)
T ss_pred HHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence 3589999999999999999999 677899999999999999999999999999988764
No 26
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=92.36 E-value=0.32 Score=40.44 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=50.6
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+..|+++.|+...+.++.++| ++..+.-+|.++++.|++.+|...++..++..|+.
T Consensus 28 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 28 YQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456799999999999999999 67889999999999999999999999998887764
No 27
>PRK11189 lipoprotein NlpI; Provisional
Probab=92.18 E-value=0.39 Score=46.58 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=51.7
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
+.|+++.|+...++.+.++| ++..+--+|.++.+.|++++|...++.-++..|+..
T Consensus 76 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 76 SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 46799999999999999999 578899999999999999999999999999988754
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=91.66 E-value=0.41 Score=50.62 Aligned_cols=54 Identities=17% Similarity=0.065 Sum_probs=35.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..|+++.|+.+.++.+.++| ++.-+..+|.++.+.|++++|+..++.-++..|+
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 45566666666666666666 3455566666666666666666666666666665
No 29
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=91.63 E-value=0.57 Score=42.94 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=50.6
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChH---HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAK---ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
..|+++.|+...++++.+.| ++. .+-..|.+++..|.+++|+..++.+++..|++.
T Consensus 45 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 45 DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 56799999999999999999 453 568899999999999999999999999999865
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=91.41 E-value=0.41 Score=50.61 Aligned_cols=56 Identities=11% Similarity=-0.068 Sum_probs=51.9
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
..++++.|+.+.++.+.++| ++.-+.-+|.++...|++++|...++.-++..|+++
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 372 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA 372 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 56789999999999999999 677888999999999999999999999999999864
No 31
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.37 E-value=0.58 Score=42.96 Aligned_cols=50 Identities=8% Similarity=0.017 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 311 MRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 311 ~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
.+.|..+.++.+.++| ++.-+-..|+.+++.|+|++|+..++..++..|+
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6999999999999999 6788999999999999999999999999998886
No 32
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.30 E-value=0.29 Score=48.06 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=50.0
Q ss_pred hHHHhhhhhhhccccccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 290 SAKAARHRLERGVWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 290 ~~~~a~~rl~~~~~~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
.+|.-+++.+ ..++|+.|+...+..|.|+| ++.-.=-|+-.|.++|.|..|++|.+..+..-|++
T Consensus 83 ~LK~eGN~~m-------~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y 148 (304)
T KOG0553|consen 83 SLKNEGNKLM-------KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY 148 (304)
T ss_pred HHHHHHHHHH-------HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH
Confidence 5555556521 35688888888888888888 77777778888888888888888888888776654
No 33
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.29 E-value=0.59 Score=42.83 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=47.1
Q ss_pred cCcCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 306 VRFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
+..|++..|+...+.++.-.| .+ ...-..|..++..|.|..|...++.|++..|+|.
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 357899999999999999999 44 3688999999999999999999999999999985
No 34
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.28 E-value=1.4 Score=37.65 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=45.6
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY 359 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~ 359 (364)
..|+++.|+..+++++.++| |...++-.=.+|+..|++.+|+.-++.|...+.
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 56799999999999999999 677899999999999999999999999877654
No 35
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.20 E-value=0.6 Score=45.09 Aligned_cols=55 Identities=5% Similarity=-0.025 Sum_probs=29.7
Q ss_pred CcCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
..|+++.|+...++++...| +| .-+.-.|.++..+|.+..|...++..++.+|++
T Consensus 192 ~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 192 NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555 22 234445555555555555555555555555554
No 36
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=0.91 Score=46.30 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=50.0
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+.-+++..|+..|++.|.++| +...+--||..+..+|.|+.|+.||+.-++.-|+.
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 345599999999999999999 56777779999999999999999999999988864
No 37
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.66 E-value=0.55 Score=45.23 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=53.7
Q ss_pred cccCcCCHHHHHHHHHHHhccCC-ChH---HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 304 NSVRFGDMRCALAACERLILLES-DAK---ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 304 ~~lr~~d~~~AL~a~ErLllL~P-dp~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
+.++.|+|..|..-.|.+..-.| .|+ -.-|.+..+|+.+.|.+|+..++.|+.++|+|-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 45689999999999999999999 665 578999999999999999999999999999873
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.63 E-value=0.88 Score=39.74 Aligned_cols=54 Identities=24% Similarity=0.404 Sum_probs=42.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..|+++.|....++.+...| ++..+...|.++++.|.+++|...++.+++..|+
T Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 45688888888888888888 4666778888888888888888888888776443
No 39
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=90.63 E-value=0.045 Score=44.54 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHHhhhhcCCccCCCCCCcCCcccccHHHHHhhccCChHHHHHHHHHHHHHhCCc
Q 017874 134 GFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW 201 (364)
Q Consensus 134 ~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~Y~dp~Ns~L~~VLe~R~GiPIsL~iIylevArRLglp 201 (364)
....++.+++++|.+++-+...|. + .+..+.......+|.++.|.+...+.++..++|.+|||
T Consensus 9 ~~~~~~~~~~~~i~~~v~~~~~y~-~----~~~~~~~~~~~~~l~~~~G~C~~~a~l~~allr~~Gip 71 (113)
T PF01841_consen 9 ANSKTPLEKAKAIYDWVRSNIRYD-D----PNYSPGPRDASEVLRSGRGDCEDYASLFVALLRALGIP 71 (113)
T ss_dssp TTSHCHHCCCCCCCCCCCCCCCEC------TCCCCCCTTHHHHHHCEEESHHHHHHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhCcEEe-C----CCCCCCCCCHHHHHHcCCCccHHHHHHHHHHHhhCCCc
Confidence 345677777888877777777766 1 33445555599999999999999999999999999999
No 40
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=90.28 E-value=0.42 Score=37.06 Aligned_cols=45 Identities=22% Similarity=0.427 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHhccCC-Ch--HHHHHHhHHHHHcCChHHHHHHHHH
Q 017874 309 GDMRCALAACERLILLES-DA--KELRDYSILLYHCGLYEQSLQYLKF 353 (364)
Q Consensus 309 ~d~~~AL~a~ErLllL~P-dp--~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (364)
|+++.|+...|+++...| ++ .-+.-.|.+|++.|.|+.|+..++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456666666666666666 31 1233356666666666666655544
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.11 E-value=0.99 Score=39.39 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=35.0
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~ 356 (364)
..|+++.|+...++.+.+.| ++..+...|.++.+.|.+++|...++..++
T Consensus 77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 56677777777777777777 455666677777777777777777766665
No 42
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.86 E-value=0.88 Score=29.00 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.9
Q ss_pred HHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 330 ELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 330 e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
.+-.+|.+++++|.+++|+.+++.-++..|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4567899999999999999999999998886
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.44 E-value=0.68 Score=49.65 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=52.3
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
+-|+.+.||...|+.+.++| +|.-+-.+|.+++-+++|.+|++.||.-.+..|+-+
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es 591 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQES 591 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH
Confidence 67899999999999999999 899999999999999999999999999999888644
No 44
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=89.32 E-value=0.33 Score=37.70 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=39.2
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFY 354 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~f 354 (364)
+.|++++|+.++++ +..+|. +....-.|..++++|.|++|+.-|+.+
T Consensus 37 ~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 37 QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 56799999999999 777774 467778899999999999999998754
No 45
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=89.26 E-value=1.1 Score=41.21 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=48.1
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHH-HHHcCC--hHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSIL-LYHCGL--YEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlL-l~~lg~--~~~A~~dL~~fl~~~~~~~ 362 (364)
..|+++.|+.+.++.+.+.| ++..+-.+|.+ +++.|. +++|.+-|+..++.-|+..
T Consensus 85 ~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 85 WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence 78899999999999999999 57788888986 478788 5999999999999988753
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=89.08 E-value=0.92 Score=48.32 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=29.5
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
..|+++.|+.+.++.+.++|+ ..-+-.+|.+++++|.+++|+..++..++..|+.
T Consensus 411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345555555555555555553 3344455555555555555555555555555543
No 47
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=88.71 E-value=0.99 Score=43.75 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874 308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY 359 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~ 359 (364)
.|+++.|...+++.+.++| ++.-..-.|.++++.|++++|.+.++..++..|
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 3455666666666666666 344555556666666666666666555555444
No 48
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=88.71 E-value=1.4 Score=38.64 Aligned_cols=54 Identities=19% Similarity=0.083 Sum_probs=44.5
Q ss_pred CcCCHHHHHHHHHHHhccCCCh----HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLESDA----KELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp----~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..|+++.|+...++.+.+.|++ ..+...|.++.+.|++++|...++..+...|.
T Consensus 47 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3468999999999998887742 36788999999999999999999888876554
No 49
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.41 E-value=1.1 Score=30.76 Aligned_cols=30 Identities=10% Similarity=-0.085 Sum_probs=14.4
Q ss_pred HHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 331 LRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 331 ~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
+..+|..|.++|++++|.+.|+..++..|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 334444444455555555555444444444
No 50
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=88.41 E-value=2.5 Score=31.89 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHhccC---C-C-h---HHHHHHhHHHHHcCChHHHHHHHHHHHHHh
Q 017874 308 FGDMRCALAACERLILLE---S-D-A---KELRDYSILLYHCGLYEQSLQYLKFYQAQW 358 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~---P-d-p---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~ 358 (364)
.|++++|+...++.+.+. + + + .-....|.++..+|++++|++.++..++..
T Consensus 18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 459999999888887553 2 2 3 258899999999999999999998877653
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=88.05 E-value=1.5 Score=38.72 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=43.6
Q ss_pred CcCCHHHHHHHHHHHhccCCCh----HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLESDA----KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp----~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
..|+++.|+.+.+..+.+.|++ ..+...|.++.++|.+++|+..++.-++..|+.
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 5678888888888888877642 367888888888899988888888887776653
No 52
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=87.84 E-value=1.1 Score=51.54 Aligned_cols=55 Identities=15% Similarity=-0.011 Sum_probs=51.3
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
..|+++.|+.+.++.+.++| +++.+..+|.+|.+.|++++|...++..++..|+.
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND 528 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 57999999999999999999 58899999999999999999999999999888865
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=87.66 E-value=0.97 Score=49.52 Aligned_cols=56 Identities=9% Similarity=-0.122 Sum_probs=37.0
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
+.|.++.|+...++++.++|| ...+.+++.++.+.+++++|+...+..++.-|+++
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 556666666666666666664 44666666666666666666666666666666654
No 54
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=87.64 E-value=1.4 Score=46.99 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=29.0
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..|+++.|+.+.+..+.++| ++..+.-+|.+++..|++++|+.+++..++..|+
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 34455555555555555555 3444555555555555555555555555555443
No 55
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=87.60 E-value=1.2 Score=50.75 Aligned_cols=56 Identities=14% Similarity=0.070 Sum_probs=42.5
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
..|+++.|+.+.++.+.++| ++..+..+|+++.++|++++|+..++.-++.-|+.+
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 46777778788888887777 566777778888888888888887777777777664
No 56
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=86.02 E-value=1.8 Score=46.86 Aligned_cols=54 Identities=9% Similarity=-0.117 Sum_probs=30.1
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..|+++.|+.++++.+.++|+ +..+..+|.++.+.|++++|+..+...+...|+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~ 176 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP 176 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Confidence 445555555555555555552 445555555555555555555555555555544
No 57
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=85.87 E-value=1.6 Score=50.20 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=52.3
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+..|+++.|+...++.+.++| ++..+...|.++++.|++++|+..++..++..|+.
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 468999999999999999999 68889999999999999999999999999998865
No 58
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=85.81 E-value=1.6 Score=48.13 Aligned_cols=57 Identities=12% Similarity=-0.138 Sum_probs=49.2
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
..|+++.|+.++++.+.++|| +..+..+|+++..+|.|++|.+.++..++..|+.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 677899999999999999994 678889999999999999999999999998888653
No 59
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=85.69 E-value=1.7 Score=49.55 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHhccCCChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 309 GDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 309 ~d~~~AL~a~ErLllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
|+++.|+.+.++.+.++|++..+..+|.++.++|++++|...|+.-++..|+.
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~ 642 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN 642 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55555555555555555554455555555555555555555555555555543
No 60
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=85.32 E-value=2.7 Score=37.71 Aligned_cols=52 Identities=12% Similarity=-0.033 Sum_probs=45.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHh
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQW 358 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~ 358 (364)
..|+++.|+.+.++.+.|+| ||.-.--.|..+..+|....|.+.++.-+..+
T Consensus 81 ~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 81 AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999 67788889999999999999999988888776
No 61
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.23 E-value=0.7 Score=44.08 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=49.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..|++..|+.+-+-.+.|+| -.|..+.||+-+|.-|+|+.|.+|+..|-..-|+
T Consensus 111 ~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 111 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred hcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence 68999999999999999999 5889999999999999999999999988765554
No 62
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=84.27 E-value=2.3 Score=46.91 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=42.4
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+..|+++.|+..++.++...| ++. +..+|.++.+.|.+.+|+..++..++..|+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT 149 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 367788888888888888887 456 7777888888888888888888888777764
No 63
>PRK11906 transcriptional regulator; Provisional
Probab=84.24 E-value=1.9 Score=44.85 Aligned_cols=56 Identities=14% Similarity=-0.002 Sum_probs=38.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
.+.+...|++..+|.+.++| ||....-.|+++.+.|.+..|...|+.-....||++
T Consensus 316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A 372 (458)
T PRK11906 316 LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA 372 (458)
T ss_pred chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH
Confidence 56666677777777777777 666666677777777777777777777777777664
No 64
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.21 E-value=3.1 Score=40.18 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 308 FGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
.|+++.|+.+.+..+...| ++ ..+--.|.+|+..|.|.+|+..++.+++.+|++.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4699999999999999999 54 5789999999999999999999999999999975
No 65
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=84.08 E-value=2.4 Score=45.98 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=26.6
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..|+++.|+...++++...|+ +....-.|.++.+.|++++|+..++..++..|+
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 345555555555555555552 222223355555555555555555555555443
No 66
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=83.97 E-value=2.4 Score=45.13 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=44.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..|+++.|+...++.+...| ++..+.-+|.++.+.|+|++|...|+..++.-|+
T Consensus 34 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 88 (899)
T TIGR02917 34 QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP 88 (899)
T ss_pred HcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 46788888888888888888 5777888888888888888888888888776665
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=83.52 E-value=2.2 Score=43.23 Aligned_cols=52 Identities=8% Similarity=0.121 Sum_probs=48.2
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQ 357 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~ 357 (364)
+..|+++.|+...++++...| ++.-.+-.|.++.+.|+|++|.+.|+.+.+.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 368999999999999999999 6888999999999999999999999998876
No 68
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=83.43 E-value=2.9 Score=42.32 Aligned_cols=56 Identities=13% Similarity=-0.010 Sum_probs=43.3
Q ss_pred cCcCCHHHHHHHHHHHhccCC-Ch--HHHHHHhHHHHHcCChHHHHHHHH--HHHHHhcCc
Q 017874 306 VRFGDMRCALAACERLILLES-DA--KELRDYSILLYHCGLYEQSLQYLK--FYQAQWYNI 361 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp--~e~RDrGlLl~~lg~~~~A~~dL~--~fl~~~~~~ 361 (364)
+.+++...++..+|+.+...| || ..+.-+|.++++.|+|++|.+.|+ .-.+..|+.
T Consensus 310 l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 310 LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 346778888888998888888 57 666778999999999999988888 454555543
No 69
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=83.11 E-value=2.5 Score=46.45 Aligned_cols=54 Identities=19% Similarity=0.017 Sum_probs=34.7
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
+.++++.|+..+|+++..+|+ +...--+|+++.++|.|++|...++.-+++.|+
T Consensus 132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 455666666666666666664 446666666666666666666666666665554
No 70
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=83.11 E-value=1.3 Score=30.42 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=25.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhH
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSI 336 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGl 336 (364)
+.|++++|..+.++.+.++| |+..|+-.|.
T Consensus 13 ~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 13 RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57899999999999999999 5767766553
No 71
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=83.03 E-value=3.4 Score=41.79 Aligned_cols=57 Identities=9% Similarity=-0.007 Sum_probs=48.0
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
+..++.+.++..+|..+.-.| ||..+.-.|.++.+.|.|+.|...|+.-++.-|+..
T Consensus 305 l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 355888899999999999999 577788899999999999999999998888877653
No 72
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.95 E-value=1.6 Score=32.06 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=31.8
Q ss_pred hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 328 AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 328 p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
+..+..+|..+++.|+|.+|+..++.-++..|+.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~ 37 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA 37 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 56789999999999999999999999999988753
No 73
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.48 E-value=1.7 Score=41.16 Aligned_cols=59 Identities=24% Similarity=0.319 Sum_probs=45.2
Q ss_pred cccccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 302 VWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 302 ~~~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
+|..+..|+...+..+++.+..-.| ||..+--.|.++.++|++++|+..++..+...|+
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 4666678888888888888777776 6777777888888888888888888888887775
No 74
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=82.36 E-value=4 Score=35.98 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=44.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCC--------------hHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGL--------------YEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~--------------~~~A~~dL~~fl~~~~~ 360 (364)
+.|+++.|+.+.+..+.+.| ++..+..+|.++.+.|. +..|++.++..++.-|+
T Consensus 84 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 84 SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 67899999999999999999 56788899999999987 56677777766666554
No 75
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=82.30 E-value=3.6 Score=43.76 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
.|+++.|+.+.++.+.++| ++..+..+|.++.+.|++++|.+.++..++..|+
T Consensus 206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (899)
T TIGR02917 206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN 259 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3445555555555555554 3444444455555555555555544444444443
No 76
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=81.93 E-value=2.8 Score=38.31 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=48.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChH---HHHHHhHHHHHc--------CChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAK---ELRDYSILLYHC--------GLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~---e~RDrGlLl~~l--------g~~~~A~~dL~~fl~~~~~~~ 362 (364)
..|+++.|+...+.++...| ++. -+--.|.++++. |.++.|+..++.+++..|++.
T Consensus 82 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 82 KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 56899999999999999999 443 466789999987 889999999999999999874
No 77
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=81.55 E-value=4.3 Score=36.49 Aligned_cols=56 Identities=4% Similarity=-0.107 Sum_probs=51.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
..|+++.|....+.+..++| +..-|--.|+++..+|.|++|+...+.-+..-||..
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 57899999999999999999 567899999999999999999999999888888764
No 78
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.61 E-value=4.5 Score=43.85 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=55.2
Q ss_pred cccccc--CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 301 GVWNSV--RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 301 ~~~~~l--r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
|++..+ .+|+.+.|+.+.+|.|.+.|+ |...-..|..+-..|...+|++.....+..+|+++
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha 354 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA 354 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence 445555 899999999999999999996 77888899999999999999999999999999986
No 79
>PLN02789 farnesyltranstransferase
Probab=80.36 E-value=3.9 Score=40.63 Aligned_cols=50 Identities=14% Similarity=-0.011 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcC-ChHHHHHHHHHHHHHhc
Q 017874 310 DMRCALAACERLILLESD-AKELRDYSILLYHCG-LYEQSLQYLKFYQAQWY 359 (364)
Q Consensus 310 d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg-~~~~A~~dL~~fl~~~~ 359 (364)
..++||..++.++.++|+ ..-|--||.++..+| .+++|+..++.-++..|
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np 103 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP 103 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC
Confidence 344444444444444442 223444444444444 34444444444444333
No 80
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=80.15 E-value=4.2 Score=39.82 Aligned_cols=55 Identities=18% Similarity=0.035 Sum_probs=45.4
Q ss_pred CcCCHHHHHHHHHHHhccCCChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
..|+++.|+...++++.+.|++....-.|.++.+.|.+++|...|+..++..|+.
T Consensus 261 ~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 5678899999999988888865544778888888999999999998888887765
No 81
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=80.03 E-value=1.8 Score=40.94 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=26.0
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~ 356 (364)
.-|+.+.|+...++++..+| ||.-+.-+|-++.+.|++++|++-.....+
T Consensus 226 ~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 226 QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66788888888888888888 677788888888888888888776655443
No 82
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.81 E-value=4.9 Score=25.27 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=27.1
Q ss_pred HHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 331 LRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 331 ~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
+-.+|.++.++|+++.|...++..++..|+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456899999999999999999999998875
No 83
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=78.86 E-value=5.3 Score=39.13 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=42.0
Q ss_pred CcCCHHHHHHHHHHHhccCCCh--HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLESDA--KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp--~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
..|+++.|+...++++...|+. ..+...+.+|.+.|.+++|...++..++..|+..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 5778888888888888777742 3456677788888888888888888877777653
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.68 E-value=4.3 Score=42.87 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=36.7
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..|||+.|+....-++..+| |+...=-|++.|-.+|.+..|+.|.+.+++.-|+
T Consensus 370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 45677777776666777777 5556666777777777777777777777666554
No 85
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.44 E-value=4 Score=23.36 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=26.0
Q ss_pred HHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 331 LRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 331 ~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
+-.+|.++.+.|.++.|+..++..++..|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 346799999999999999999998887765
No 86
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=78.36 E-value=5.9 Score=37.58 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=46.3
Q ss_pred CcCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHcCC------------------hHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGL------------------YEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~lg~------------------~~~A~~dL~~fl~~~~~~~ 362 (364)
+.++++.|+...|+.+.+.| +| +-.--+|+.++.++. -..|+..|+.|++++|||.
T Consensus 81 ~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 81 KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 67899999999999999999 54 457778887766651 2578899999999999985
No 87
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=77.83 E-value=7.9 Score=33.79 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=39.4
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHH-------HcCChHHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLY-------HCGLYEQSLQYLKF 353 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~-------~lg~~~~A~~dL~~ 353 (364)
..|+++.|+.++++.+.+.|+ ...+..+|.++. .+|++++|+.++..
T Consensus 84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 84 SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 578999999999999999994 567788888888 88898877766653
No 88
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=76.25 E-value=5 Score=40.54 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=44.5
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHH
Q 017874 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~ 356 (364)
+..|+++.|+...++++..+| ++.-.+-.+.+|.+.|+|++|+.-|.....
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 478999999999999999999 688899999999999999999966665554
No 89
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.14 E-value=4.9 Score=39.68 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 308 FGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
-|.++.|...||..|.++|+ ...+--.|+.|+-+|.|.+|++.++.-++.-|+-
T Consensus 128 Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 128 LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc
Confidence 46999999999999999996 5578889999999999999999988888777763
No 90
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=75.11 E-value=13 Score=31.70 Aligned_cols=45 Identities=29% Similarity=0.367 Sum_probs=24.1
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hH--HHHH-HhHHHHHcCChHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLESD-AK--ELRD-YSILLYHCGLYEQSLQYL 351 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~--e~RD-rGlLl~~lg~~~~A~~dL 351 (364)
.-|+++.|+...+..+.-.|+ ++ ..+- +++.++..|++.+|+..+
T Consensus 50 ~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 50 NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455666666666666555553 22 3332 245556666666665554
No 91
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.05 E-value=5.6 Score=43.19 Aligned_cols=61 Identities=11% Similarity=0.229 Sum_probs=44.4
Q ss_pred cccc-----CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 303 WNSV-----RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 303 ~~~l-----r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
|+|| ..|+..+|+.-.|..+.|+|+ +...-..|.+|-.++.|+.|+.....-+..-||+||
T Consensus 221 wsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~ 287 (966)
T KOG4626|consen 221 WSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV 287 (966)
T ss_pred ehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh
Confidence 5555 467777777777777777775 556667777777777777777777777777777776
No 92
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.24 E-value=6.5 Score=37.24 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=46.6
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..+.|+.|+..|-..+.|+|. ...+--|+-+|-++..|++|+.|+...++..|-
T Consensus 146 Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 146 KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 455999999999999999994 445555799999999999999999999988774
No 93
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=72.50 E-value=8.5 Score=40.29 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=52.5
Q ss_pred cCcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 306 VRFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
++.++...|....++++.+.|+ +..+--+|-.|.+.|.+.+|+..|..++...|+-+
T Consensus 351 ~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 351 LEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred HHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 3889999999999999999996 88999999999999999999999999998888754
No 94
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=71.07 E-value=6.3 Score=41.07 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=35.5
Q ss_pred cCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 324 LES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 324 L~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
-+| ++..+-.+|..|+++|+|++|+..++.-++..|+.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 367 578999999999999999999999999999999864
No 95
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=71.02 E-value=8.5 Score=35.14 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=43.7
Q ss_pred CcCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHcCC-----------hHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGL-----------YEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~lg~-----------~~~A~~dL~~fl~~~~~~~ 362 (364)
..|+++.|....++.+...| +| +-.--+|+.++.... ...|...++.|++.+|||.
T Consensus 54 ~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 54 KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 56899999999999999999 54 467778888777632 3489999999999999985
No 96
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=70.58 E-value=7.7 Score=40.62 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=43.4
Q ss_pred CcCCHHHHHHHHHHHhccCCChHHHHHHhHHHHHcCChHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLK 352 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~ 352 (364)
-.|+++.+.-.++=+...+|.|..+|-.|+.++.-.+|.+|+..|.
T Consensus 474 sqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred hcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5889999999999999999999999999999999999999998764
No 97
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=68.12 E-value=12 Score=39.92 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=48.6
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+.+.++.|+.+.+..|.+.| ++.-.=-.|++|..+|.++.|++.+..=+..-|+-
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 46689999999999999999 78889999999999999999999888777666653
No 98
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=67.53 E-value=9.5 Score=39.16 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=42.9
Q ss_pred cCcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHH
Q 017874 306 VRFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFY 354 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~f 354 (364)
+..++++.|+.++.+.+.+.|+ -.-|--.+.+|.++|+|+.|+.-|+.+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 3677999999999999999995 457888999999999999999887643
No 99
>PLN02789 farnesyltranstransferase
Probab=67.44 E-value=13 Score=36.91 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHHHHHHHHhccCCCh-HHHHHHhHHHHHcCChHHHHHHHHHHHH
Q 017874 313 CALAACERLILLESDA-KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (364)
Q Consensus 313 ~AL~a~ErLllL~Pdp-~e~RDrGlLl~~lg~~~~A~~dL~~fl~ 356 (364)
.++.+++.++.++|.. .-|--||.++.++|.|++|+++.+..++
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444432 2444444444444444444444444444
No 100
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.34 E-value=17 Score=32.81 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=48.5
Q ss_pred cCcCCHHHHHHHHHHHhccCCChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874 306 VRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY 359 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~ 359 (364)
-..+..+..+...++.+...|+|.-.+.++.+++..|+.++|.+.+..+...+|
T Consensus 122 ~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 122 PDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345567778889999999999999999999999999999999999999988887
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=66.70 E-value=6.5 Score=39.97 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=51.3
Q ss_pred ccccccCcCCHHHHHHHHHHHhccCCCh-HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 301 GVWNSVRFGDMRCALAACERLILLESDA-KELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 301 ~~~~~lr~~d~~~AL~a~ErLllL~Pdp-~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
|--+-|-.|.-.-||.-.+|.|.|.||- ..+-.||.++.+.|.+++|.+|+.+.+.+-|+
T Consensus 78 RaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s 138 (504)
T KOG0624|consen 78 RATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS 138 (504)
T ss_pred HHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC
Confidence 3334455667778999999999999995 48999999999999999999999999998885
No 102
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=66.42 E-value=4.6 Score=29.30 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=26.5
Q ss_pred HHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 333 DYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 333 DrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
++|..+++.|+|++|+..++..++..|+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~ 30 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN 30 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 57999999999999999999999988863
No 103
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=66.17 E-value=15 Score=38.92 Aligned_cols=54 Identities=13% Similarity=-0.133 Sum_probs=45.1
Q ss_pred CcCCHHHHHHHHHHHhccCCChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..|+++.|.+..++.+.|+|+..-.--+|.++...|++++|.+.++.=+..-|.
T Consensus 432 ~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 568999999999999999997667788899999999999998888776665554
No 104
>PRK11906 transcriptional regulator; Provisional
Probab=65.40 E-value=14 Score=38.70 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 308 FGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
-++++.|....||.+.|+|+ +.-+--+|+++++.|+.++|.+.++..++..|.
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 34599999999999999995 778999999999999999999999998887764
No 105
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=65.06 E-value=4 Score=29.96 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=24.9
Q ss_pred HHhhccCChHHHHHHHHHHHHHhCCc
Q 017874 176 VLTHRTGSAVMLSLIYSEILKMLRIW 201 (364)
Q Consensus 176 VLe~R~GiPIsL~iIylevArRLglp 201 (364)
||++|.|.+-..+.++..++|.+|+|
T Consensus 1 ~~~~~~G~C~~~a~l~~~llr~~GIp 26 (68)
T smart00460 1 LLKTKYGTCGEFAALFVALLRSLGIP 26 (68)
T ss_pred CCcccceeeHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999999
No 106
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=64.09 E-value=8.9 Score=39.69 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=55.5
Q ss_pred hhhHHHhhhhhhhccccccCcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874 288 LASAKAARHRLERGVWNSVRFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQ 357 (364)
Q Consensus 288 ~~~~~~a~~rl~~~~~~~lr~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~ 357 (364)
|.+.++.-+-..+|-..++|-|+.+.|+..|++.+.|+|. -...--||..+.-++.|++|++|++..++.
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444555666778999999999999999999995 455666888999999999999999988764
No 107
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=63.93 E-value=14 Score=37.24 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=48.9
Q ss_pred CcCCHHHHHHHHHHHhccCCC--hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 307 RFGDMRCALAACERLILLESD--AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd--p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
..|+++.|..+.|+.+.-+|+ +.-.--.--.|.|+|...+...-|..+.+..++.++
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 688999999999999999997 333444566789999999999999999999988764
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=63.91 E-value=11 Score=41.29 Aligned_cols=56 Identities=7% Similarity=-0.095 Sum_probs=52.9
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
+.+|++.+.+..|+-+.++| .+.-|--+|-+..|++.++.|++++.+|+..-|+++
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ 553 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA 553 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch
Confidence 67899999999999999999 788999999999999999999999999999988875
No 109
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=63.39 E-value=3.3 Score=27.19 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=18.6
Q ss_pred CcCCHHHHHHHHHHHhccCCChHHHH
Q 017874 307 RFGDMRCALAACERLILLESDAKELR 332 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp~e~R 332 (364)
..|+|++|+.+.++.|.+..++.++|
T Consensus 11 ~~g~~~~Ai~~y~~aL~l~~~~~~~~ 36 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALALARDPEDRR 36 (36)
T ss_dssp HCT-HHHHHHHHHHHHHHHHHCT-H-
T ss_pred HcCCHHHHHHHHHHHHHhcccccCCC
Confidence 35699999999999888876655443
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.45 E-value=13 Score=39.70 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=21.7
Q ss_pred CcCCcccccHHHHHhhccCChHHHHHHHHHHHHH
Q 017874 164 QLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKM 197 (364)
Q Consensus 164 ~Y~dp~Ns~L~~VLe~R~GiPIsL~iIylevArR 197 (364)
-|.+-.+-|-.--.--|.|- |+=+++.+|.|-+
T Consensus 281 p~~~~pdPf~eG~~lm~nG~-L~~A~LafEAAVk 313 (579)
T KOG1125|consen 281 PYIDHPDPFKEGCNLMKNGD-LSEAALAFEAAVK 313 (579)
T ss_pred cccCCCChHHHHHHHHhcCC-chHHHHHHHHHHh
Confidence 44444444554445556777 8889999998854
No 111
>PRK14574 hmsH outer membrane protein; Provisional
Probab=62.17 E-value=15 Score=41.29 Aligned_cols=53 Identities=9% Similarity=-0.077 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
.|++.+|+.+.+.++..+| ++..+.-.++++.+.+.+.+|++.++......|.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 4577777777777777777 4555555566777777777777777666655554
No 112
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.11 E-value=13 Score=32.98 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=45.3
Q ss_pred CcCCHHHHHHHHHHHhccCCChHHHHHH----hHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLESDAKELRDY----SILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp~e~RDr----GlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
...|.++.+.+.|-++. .-+|.++||. ++-+|+++.|+.|+.++..+++.-||.
T Consensus 47 ~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred chHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 34488899999999888 4467778874 777899999999999999999998874
No 113
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.27 E-value=17 Score=37.17 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 310 DMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 310 d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
+++.|+.+.-|.|.=+|. ...-=-.++.||+++.|+-+-+-|.-|+.+.|||.+
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 999999999999998886 345567899999999999999999999999999854
No 114
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=59.86 E-value=27 Score=34.47 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=50.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
.+.+-.++-......+.++| |..-+--+|+-+++-|+|.+|+...+.+++..|+-
T Consensus 205 ~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 205 GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 56688889999999999999 67788899999999999999999999999999874
No 115
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.68 E-value=18 Score=34.72 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=51.5
Q ss_pred ccccCcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 303 WNSVRFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 303 ~~~lr~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
|-.++.|+...|-...+|.|.++|+ |.-+-+..-+++.-|+|..|...++.|....+.
T Consensus 147 ~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~ 205 (250)
T COG3063 147 LCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGA 205 (250)
T ss_pred HHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccc
Confidence 3345899999999999999999995 888999999999999999999999999876653
No 116
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=58.47 E-value=21 Score=36.64 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=52.3
Q ss_pred hccccccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874 300 RGVWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY 359 (364)
Q Consensus 300 ~~~~~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~ 359 (364)
.+....++++|.+.-+...|.-+...| +|...+-.|+|+++-+.|..|-..|+.-+..-|
T Consensus 299 ~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 299 CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 344556799999999999999999999 799999999999999999999999997666544
No 117
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.57 E-value=21 Score=28.71 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 314 ALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 314 AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
.+...+.-+.-+| |+..+.+.+..+...|++++|++-|-..+.+-++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3556777788899 6789999999999999999999988777665443
No 118
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=56.73 E-value=23 Score=34.28 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=46.7
Q ss_pred CcCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHc--------CChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-DA---KELRDYSILLYHC--------GLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~l--------g~~~~A~~dL~~fl~~~~~~~ 362 (364)
..++++.|+..+||-+.+.| +| |..--+|+.++.. ....+|..+++.|++++|||.
T Consensus 83 k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 83 KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 67899999999999999999 53 6788888887654 124578999999999999985
No 119
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=51.96 E-value=12 Score=40.55 Aligned_cols=55 Identities=7% Similarity=-0.069 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHhccCCChH-HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 309 GDMRCALAACERLILLESDAK-ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 309 ~d~~~AL~a~ErLllL~Pdp~-e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
++++.|..+....|.++|+-| .|--.|++|.+.+.++.|..-++.-++..|..+|
T Consensus 469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv 524 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV 524 (638)
T ss_pred HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh
Confidence 367777777777777777544 7777777777777777777777777777776665
No 120
>PRK14574 hmsH outer membrane protein; Provisional
Probab=51.06 E-value=28 Score=39.18 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=35.0
Q ss_pred CcCCHHHHHHHHHHHhccCCC---hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLESD---AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd---p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
..|+.+.|+..+|+.+ +|+ ....+=.|.++...|+|..|++-++..++.-|+.
T Consensus 80 ~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n 135 (822)
T PRK14574 80 WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTN 135 (822)
T ss_pred HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4477777777777777 442 2345555667777777777777777777777664
No 121
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=49.36 E-value=27 Score=37.98 Aligned_cols=44 Identities=25% Similarity=0.229 Sum_probs=38.8
Q ss_pred CcCCHHHHHHHHHHHhccCCChH-HHHHHhHHHHHcCChHHHHHH
Q 017874 307 RFGDMRCALAACERLILLESDAK-ELRDYSILLYHCGLYEQSLQY 350 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp~-e~RDrGlLl~~lg~~~~A~~d 350 (364)
.-.+|..|+.|....+.+.||+. .+||.++|..|+|.|...+.-
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34599999999999999999865 899999999999999887543
No 122
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.33 E-value=21 Score=26.12 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=18.4
Q ss_pred CcCCHHHHHHHHHHHhccCCCh
Q 017874 307 RFGDMRCALAACERLILLESDA 328 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp 328 (364)
+-|++..|+..++++|.++|++
T Consensus 13 kl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 13 KLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HTT-HHHHHHHHHHHHHHTTS-
T ss_pred HhhhHHHHHHHHHHHHhhCCCc
Confidence 4579999999999999999964
No 123
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=48.72 E-value=34 Score=35.14 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=45.8
Q ss_pred ccccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHH
Q 017874 303 WNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (364)
Q Consensus 303 ~~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl 355 (364)
--.+..||++-|..-++.++.+.| +|.-.|-.-..|.+.|.|.+....|....
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ 214 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR 214 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334578999999999999999999 67889999999999999999987776544
No 124
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=48.36 E-value=42 Score=35.72 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=43.0
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl 355 (364)
+-|+++.||..+|+.+...|. +...=-.|.+|-|.|.+.+|...++.-.
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456999999999999999994 7778888999999999999999887643
No 125
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.71 E-value=33 Score=25.05 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.8
Q ss_pred HhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 334 YSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 334 rGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
.++-+|++|.|..|....+..++.-|+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 578899999999999999999998886
No 126
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=46.87 E-value=54 Score=27.86 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 308 FGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
.|+.++|+...++.+.... ++ ..+-.+|-.|-++|++++|+.-|+.-++.+|+
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4589999999999999775 33 35668999999999999999999999999887
No 127
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.22 E-value=17 Score=38.44 Aligned_cols=60 Identities=5% Similarity=-0.085 Sum_probs=49.9
Q ss_pred ccccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 303 WNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 303 ~~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
.+-+..++-+.....-....-|+| +|.-.--||-+++-++.|++|+.|++..+..-|+++
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 344456677778888888889999 677778889999999999999999999998888775
No 128
>COG1305 Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]
Probab=46.12 E-value=77 Score=29.73 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCccCCCCCCcCCcccccHHHHHhhccCChHHHHHHHHHHHHH
Q 017874 118 SQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKM 197 (364)
Q Consensus 118 ~~Ld~La~ev~~~l~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~Y~dp~Ns~L~~VLe~R~GiPIsL~iIylevArR 197 (364)
..+.+++.+. ......+.+++..+..+++....|.... .+...--..+|+.++|.+-=.+.+++.++|.
T Consensus 142 ~~~~~la~~~-----~~~~~~~~~~~~~~~~~~~~~~~y~~~~------~~~~~~~~~~l~~~~G~C~d~a~l~val~Ra 210 (319)
T COG1305 142 PRVAELAARE-----TGGATTPREKAAALFDYVNSKIRYSPGP------TPVTGSASDALRLGRGVCRDFAHLLVALLRA 210 (319)
T ss_pred HHHHHHHHHh-----hcccCCHHHHHHHHHHHHhhcceeecCC------CCCCCCHHHHHHhCCcccccHHHHHHHHHHH
Confidence 3445555442 2345678889999999888555554432 2333445679999999999999999999999
Q ss_pred hCCc
Q 017874 198 LRIW 201 (364)
Q Consensus 198 Lglp 201 (364)
+|||
T Consensus 211 ~GIp 214 (319)
T COG1305 211 AGIP 214 (319)
T ss_pred cCCc
Confidence 9999
No 129
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=45.93 E-value=42 Score=34.32 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=49.6
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
..|++-.|++.|.+.|-++|| ..-.-||+-.|.-...|+.|++|.+.-++..++.
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 678999999999999999995 5688999999999999999999999988877653
No 130
>PRK10941 hypothetical protein; Provisional
Probab=45.86 E-value=6.7 Score=38.15 Aligned_cols=48 Identities=13% Similarity=-0.050 Sum_probs=35.6
Q ss_pred hhhhhHHHhhhh-hhhccccccCcCCHHHHHHHHHHHhccCCChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 286 LQLASAKAARHR-LERGVWNSVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 286 ~~~~~~~~a~~r-l~~~~~~~lr~~d~~~AL~a~ErLllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+.++.+++|.+| ++.||++|+ -..|.+.++++.|+...+.-+...|+.
T Consensus 166 l~~~~L~~a~~~~il~Rml~nL----------------------------K~~~~~~~~~~~AL~~~e~ll~l~P~d 214 (269)
T PRK10941 166 LFNEDLDEADNIEVIRKLLDTL----------------------------KAALMEEKQMELALRASEALLQFDPED 214 (269)
T ss_pred CCHHHcCCCCHHHHHHHHHHHH----------------------------HHHHHHcCcHHHHHHHHHHHHHhCCCC
Confidence 445677888888 655555444 356778899999999999988888875
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=45.62 E-value=43 Score=35.26 Aligned_cols=57 Identities=19% Similarity=0.067 Sum_probs=52.1
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
+.|++..|+...+=|+...| +||.+--+|-++...+++++|.+.++.-+.+.|++.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~ 375 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL 375 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH
Confidence 56788899999999999999 5889999999999999999999999999999999754
No 132
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.40 E-value=40 Score=26.87 Aligned_cols=55 Identities=29% Similarity=0.259 Sum_probs=42.8
Q ss_pred cccCcCCHHHHHHHHHHHhccCC-C---h------HHHHHHhHHHHHcCChHHHHHHHHHHHHHh
Q 017874 304 NSVRFGDMRCALAACERLILLES-D---A------KELRDYSILLYHCGLYEQSLQYLKFYQAQW 358 (364)
Q Consensus 304 ~~lr~~d~~~AL~a~ErLllL~P-d---p------~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~ 358 (364)
..++.||+..|+....+..-... . . +..-..|.++...|++++|++.|+.-++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44677899999888888877664 1 1 345668889999999999999998877653
No 133
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=45.27 E-value=59 Score=31.33 Aligned_cols=57 Identities=11% Similarity=-0.086 Sum_probs=47.6
Q ss_pred ccCcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 305 SVRFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 305 ~lr~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
-++.||+..|..-.|..|..+|+ ..-+--++.+|.+.|..+.|-+..+.-+..-|+.
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN 102 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence 35788999999999999999995 5578888999999999999988888877777764
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.09 E-value=65 Score=31.56 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHhccCC-ChH-HHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 310 DMRCALAACERLILLES-DAK-ELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 310 d~~~AL~a~ErLllL~P-dp~-e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
.+..|+.+.|++|.=+| |.. -.|-.+++..+ |.--+|++.|..|++.+++
T Consensus 101 ~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~-GK~l~aIk~ln~YL~~F~~ 152 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ-GKNLEAIKELNEYLDKFMN 152 (289)
T ss_pred chhhHHHHHHHHhccCcchhHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcC
Confidence 56666666666666666 422 23344443333 4444666666666666654
No 135
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=44.93 E-value=75 Score=33.73 Aligned_cols=62 Identities=6% Similarity=-0.033 Sum_probs=48.6
Q ss_pred hhccccccCcCCHHHHHHHHHHHhcc--CC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 299 ERGVWNSVRFGDMRCALAACERLILL--ES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 299 ~~~~~~~lr~~d~~~AL~a~ErLllL--~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
.+..|......+++.+....++.+.+ .| +|.-..-.|+++...|++++|...|+.-++..|+
T Consensus 388 ~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps 452 (517)
T PRK10153 388 VRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS 452 (517)
T ss_pred HHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 33446655566788999999987775 45 5656666899999999999999999998888774
No 136
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=44.59 E-value=61 Score=34.52 Aligned_cols=55 Identities=20% Similarity=0.068 Sum_probs=40.5
Q ss_pred CcCCHHHHHHHHHHHhccCCCh-HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLESDA-KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp-~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
..|++++||...+---..-+|- .-.--+|-+|.++|++++|.......+++.|+.
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn 71 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN 71 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 4568888888877766666663 344557888888888888888888888887764
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=44.22 E-value=31 Score=38.80 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=52.8
Q ss_pred hhhhhhccccccCcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHH
Q 017874 295 RHRLERGVWNSVRFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFY 354 (364)
Q Consensus 295 ~~rl~~~~~~~lr~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~f 354 (364)
.-|.+|.+|.++..+++..||+-++.++.=.|. ++.+=--|+.++++|.+.+|...|+.-
T Consensus 9 ~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~ 69 (932)
T KOG2053|consen 9 SERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEAL 69 (932)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhh
Confidence 346678889999999999999999999999994 888888999999999999998777653
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.60 E-value=68 Score=27.24 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHhccCCCh----HHHHHHhHHHHHcCChHHHHHHH
Q 017874 308 FGDMRCALAACERLILLESDA----KELRDYSILLYHCGLYEQSLQYL 351 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~Pdp----~e~RDrGlLl~~lg~~~~A~~dL 351 (364)
.|+++.|....+..+.-.||+ ..+--.+.++++.|.|++|+..|
T Consensus 61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445555555555555544432 12223455555555555555555
No 139
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=43.37 E-value=47 Score=21.18 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=20.5
Q ss_pred HHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874 332 RDYSILLYHCGLYEQSLQYLKFYQAQ 357 (364)
Q Consensus 332 RDrGlLl~~lg~~~~A~~dL~~fl~~ 357 (364)
-..|.+|...|++++|...++.-++.
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999888776654
No 140
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=42.21 E-value=47 Score=20.11 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHcCChHHHHHHHH
Q 017874 330 ELRDYSILLYHCGLYEQSLQYLK 352 (364)
Q Consensus 330 e~RDrGlLl~~lg~~~~A~~dL~ 352 (364)
-.-.+|.++.+.|++++|..-++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34568999999999999988765
No 141
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.93 E-value=45 Score=35.80 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=43.5
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
+.|++..|.-+.|-.+.-+| |...|+-.|+.....+.=..|+..|..|++.-|+
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~ 351 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT 351 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc
Confidence 67778888888888888888 5677888888888888888888888888877665
No 142
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=40.56 E-value=51 Score=21.36 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=19.9
Q ss_pred HHHhHHHHHcCChHHHHHHHHHHH
Q 017874 332 RDYSILLYHCGLYEQSLQYLKFYQ 355 (364)
Q Consensus 332 RDrGlLl~~lg~~~~A~~dL~~fl 355 (364)
--.|.+|.+.|.|+.|+..++.-+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357899999999999999998854
No 143
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=40.40 E-value=65 Score=36.34 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=48.4
Q ss_pred CcCCHHHHHHHHHHHhccCCCh-HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLESDA-KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp-~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
..|.+.+|.-|..|.+.++|.. ..+..|..||.++|.+..|..-...-+...||.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 6788999999999999999954 478999999999999999998888877777754
No 144
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=39.28 E-value=68 Score=30.88 Aligned_cols=54 Identities=11% Similarity=-0.109 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 308 FGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
.+....+..+.+......|+ ++-+.-.|.++...|++++|...++..++..|+.
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 34566666776664444553 5677789999999999999999999999998875
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=38.84 E-value=73 Score=36.29 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874 310 DMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY 359 (364)
Q Consensus 310 d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~ 359 (364)
++++|..+.|++|.++| ++.-..-+|..|... +.+.|.+....-++++.
T Consensus 131 ~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 131 ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999 678899999999999 99999888877766654
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.56 E-value=94 Score=26.35 Aligned_cols=56 Identities=21% Similarity=0.094 Sum_probs=47.5
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChH---HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 306 VRFGDMRCALAACERLILLES-DAK---ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+..++...+-...+.++.-.| .++ -.-..|-+++..|.+++|...|+..++..|+.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~ 81 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP 81 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence 356788889889999999999 444 56678999999999999999999999987654
No 147
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.97 E-value=40 Score=32.79 Aligned_cols=54 Identities=11% Similarity=-0.021 Sum_probs=45.1
Q ss_pred cCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 308 FGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+..|..|+.+.-|.+.++|. +.-++-|++.+.++.+|+..-.|=..-++..||+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~ 77 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL 77 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence 34788899999999999995 5688999999999999999888888777777775
No 148
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.92 E-value=51 Score=35.12 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=51.4
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
+-.++++++...|+..-++|+ ..|-|..|--+++.|.|..|+..+..-+.+-|+.++
T Consensus 336 ~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 336 KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 345889999999999999997 569999999999999999999999999999988654
No 149
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.78 E-value=65 Score=30.72 Aligned_cols=53 Identities=11% Similarity=-0.009 Sum_probs=46.0
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHH-----HHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874 307 RFGDMRCALAACERLILLES-DAKEL-----RDYSILLYHCGLYEQSLQYLKFYQAQWY 359 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~-----RDrGlLl~~lg~~~~A~~dL~~fl~~~~ 359 (364)
..|+|+.|..-+.+.|.++| -+.+. -.||..+.+++.++.|+.|-+.-++.+|
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP 165 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence 57899999999999999999 45443 4678888999999999999999998887
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.38 E-value=1.1e+02 Score=29.92 Aligned_cols=56 Identities=16% Similarity=0.078 Sum_probs=47.8
Q ss_pred cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
-|....|..|..+|-.--| .+---+-.||++.-.|.|.+|.+.++.-++--|...|
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v 121 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV 121 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH
Confidence 3477789999998776668 5777899999999999999999999999988887665
No 151
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=36.62 E-value=61 Score=34.60 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=40.8
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHH
Q 017874 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~ 356 (364)
+..||...|-+-+--.|.-.| +|..+.-++.+.-|+|.|+.|.++++.--.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~ 351 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK 351 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhh
Confidence 356777777666666666678 899999999999999999999999986543
No 152
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=35.42 E-value=68 Score=23.78 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=23.9
Q ss_pred HHHHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874 330 ELRDYSILLYHCGLYEQSLQYLKFYQAQ 357 (364)
Q Consensus 330 e~RDrGlLl~~lg~~~~A~~dL~~fl~~ 357 (364)
-....|.+|.+.|+|++|+..++..++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578899999999999999999988865
No 153
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.89 E-value=49 Score=27.96 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=33.0
Q ss_pred hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 328 AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 328 p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
|...--.|+||...|.-+.|+++++.=-..+|.|+|
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 557778999999999999999999999999999876
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=33.55 E-value=1.4e+02 Score=27.13 Aligned_cols=50 Identities=6% Similarity=-0.020 Sum_probs=32.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~ 356 (364)
..|+++.|...-..|..++| ++.=+--.|.++..++.|+.|+.-......
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776 554566666677777777777665554443
No 155
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=33.48 E-value=2e+02 Score=27.08 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=23.3
Q ss_pred CCcceeEe-eecCCCCcccchhhhhHHHHhhhhcCCChHHHH
Q 017874 19 KFSRYRVT-CCSGSQQKYVASDLKLALHDVLDSIGTDTTFAR 59 (364)
Q Consensus 19 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 59 (364)
-|.+|++= ||||..+ |.++....|+|++.+-
T Consensus 21 vf~~~~idfCcgG~~~----------l~ea~~~~~i~~~~~~ 52 (220)
T PRK10992 21 LFREYDLDFCCGGKQT----------LARAAARKNLDIDVIE 52 (220)
T ss_pred HHHHcCCcccCCCCch----------HHHHHHHcCCCHHHHH
Confidence 45667765 9999865 7888899999994433
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=32.76 E-value=1.4e+02 Score=29.59 Aligned_cols=55 Identities=13% Similarity=-0.037 Sum_probs=46.1
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
....++......|.-|.-+| |..-|--.|-+|..+|++..|...+..-+...|+.
T Consensus 134 ~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n 189 (287)
T COG4235 134 AEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN 189 (287)
T ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC
Confidence 45578888999999999999 67788889999999999999998888877777764
No 157
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=30.78 E-value=85 Score=28.16 Aligned_cols=58 Identities=19% Similarity=0.075 Sum_probs=46.7
Q ss_pred ccccCcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 303 WNSVRFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 303 ~~~lr~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
+..++.++...+-...+.|-.|.|. +...-=-|.++.+.|+|.+|+.-|..-.+.-++
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 4445677999999999999999996 555555699999999999999999877665544
No 158
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.84 E-value=88 Score=31.03 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=52.5
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
+..+++..|.+..+..+..+| ++...-.-++++..+|+..+|+.-++..+++.|.++.
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred ecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 377888888888888999999 7888899999999999999999999999999998764
No 159
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=27.65 E-value=1.6e+02 Score=32.67 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=51.9
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV 363 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~ 363 (364)
..|..-+|..+.||..+-+| ++..|-+-=.+-++.|+.++|-.-+..-+..||++..
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence 56689999999999999999 5778888889999999999999999999999999863
No 160
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=27.28 E-value=51 Score=24.41 Aligned_cols=33 Identities=27% Similarity=0.651 Sum_probs=23.7
Q ss_pred CCcceeEe-eecCCCCcccchhhhhHHHHhhhhcCCChHHHHHH
Q 017874 19 KFSRYRVT-CCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREA 61 (364)
Q Consensus 19 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a 61 (364)
-|.+|++= |+||..+ |+++..+.|+|++.+-+.
T Consensus 18 vf~~~gIDfCCgG~~~----------L~eA~~~~~ld~~~vl~~ 51 (56)
T PF04405_consen 18 VFRKYGIDFCCGGNRS----------LEEACEEKGLDPEEVLEE 51 (56)
T ss_pred HHHHcCCcccCCCCch----------HHHHHHHcCCCHHHHHHH
Confidence 35566664 9999855 888899999999544333
No 161
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.21 E-value=1.1e+02 Score=32.71 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 309 GDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 309 ~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
++++.|+.=-+..+.|+| +.+-.=..+.++|+.+.+.++..-++-.+..+|+.+
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~ 462 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP 462 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 489999999999999999 667778899999999999999999999999999864
No 162
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.02 E-value=94 Score=20.63 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHhccCCChHHHH
Q 017874 310 DMRCALAACERLILLESDAKELR 332 (364)
Q Consensus 310 d~~~AL~a~ErLllL~Pdp~e~R 332 (364)
.+++|..+.||.+...|++..|-
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHH
Confidence 57899999999999999875443
No 163
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=26.32 E-value=1.3e+02 Score=17.66 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHhccCC-ChHHHHHHhH
Q 017874 309 GDMRCALAACERLILLES-DAKELRDYSI 336 (364)
Q Consensus 309 ~d~~~AL~a~ErLllL~P-dp~e~RDrGl 336 (364)
|++++|..+.|+++.-.| ++..|..+.-
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 478889999999999999 5667766653
No 164
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=25.76 E-value=93 Score=31.93 Aligned_cols=46 Identities=9% Similarity=0.053 Sum_probs=37.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLK 352 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~ 352 (364)
.+|.|+.|+.|.-+-+.+.| +|...-.|++.|++...|..|-.|-+
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 57899999999999999999 57777888888888888777755543
No 165
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=25.32 E-value=1.1e+02 Score=29.88 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=44.8
Q ss_pred ccccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCCh-HHHHHHHHHHHHHhcCc
Q 017874 303 WNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLY-EQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 303 ~~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~-~~A~~dL~~fl~~~~~~ 361 (364)
+..+..|+|+.|-.+.+-.+..+| ||.-+=....+..++|.. +.+-+.++......|+|
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 445678899999999999999999 688888999999999999 44556666666666765
No 166
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=25.26 E-value=2.5e+02 Score=25.38 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=44.2
Q ss_pred cccCcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 304 NSVRFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 304 ~~lr~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..++.++...+-...+.|-.|.|. +...==-|+++.+.|+|.+|+.-|+.-.+.-|.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 344666888888899999999995 555556689999999999999988886555443
No 167
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=25.23 E-value=4.6e+02 Score=24.85 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=72.6
Q ss_pred ccccccccCCCCcHHHHHHHHHhhcCCCCCCCCCCCCHHH-HHHHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhc
Q 017874 76 ERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDA-LISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKK 154 (364)
Q Consensus 76 ~~~~~~~~~~~~dL~~aAL~IA~~~~p~~~~~~v~ldv~~-~~~~Ld~La~ev~~~l~~~~~~~p~~~l~~Ln~~Ly~~~ 154 (364)
+++.+..+++..+|+.+++....+..- +=-+.. ..++-+++..+.+.. +....+.+++++.|..+++ ++
T Consensus 75 ~~g~~~f~~~y~~l~~~~l~~l~~~~G-------~~~l~~~l~~r~~~~~~~~~~~--~~~~~~~ee~~e~Lv~l~~-~~ 144 (218)
T COG2345 75 EKGREQFPKRYGELALALLDALEETGG-------EEALNAFLEKRAQAIGAQYRPA--MGGDADLEEKVERLVELLS-DL 144 (218)
T ss_pred ccchhhcchhhHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHHH-hC
Confidence 445556778888888888777766654 100111 123445555555544 4446889999999999764 57
Q ss_pred CCccCCCC---CCcCCcccccHHHHHhhccCChHHHHHHHHHHHHHhC
Q 017874 155 GFRRTNAR---NQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLR 199 (364)
Q Consensus 155 GF~g~~~~---~~Y~dp~Ns~L~~VLe~R~GiPIsL~iIylevArRLg 199 (364)
||-+.... ..|--.++++-...+.++ .|+....---.+..-||
T Consensus 145 gy~~e~~~~~~~~~~l~e~nCPi~~vA~~--~~~~C~~e~~~~~~~Lg 190 (218)
T COG2345 145 GYMPELRPVDNGRVQLIEHNCPISAVAEE--FPVACESELALFAEVLG 190 (218)
T ss_pred CccccccccCCCceEEEecCCchHHHHHH--hHHHHHHHHHHHHHHhc
Confidence 88775320 134445677777777777 88888888888888877
No 168
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=25.11 E-value=1.1e+02 Score=33.03 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=49.2
Q ss_pred hhhccccccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874 298 LERGVWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY 359 (364)
Q Consensus 298 l~~~~~~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~ 359 (364)
++.|.|.+ |--.||+-|--.+.++| ....+-=.+..+.+++++.+|+++...++-.+|
T Consensus 418 lmkRkW~~----d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 418 LMKRKWRG----DSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHhhhccc----cHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 56677765 88889999999999999 566666677888999999999999999998888
No 169
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.96 E-value=2.2e+02 Score=30.27 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHh
Q 017874 308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQW 358 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~ 358 (364)
-+.++.|..|.-|.+.+.- .-...--.|-||-+++.+.+|++..+.|++..
T Consensus 445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4589999999999999987 44455668999999999999999999999853
No 170
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.95 E-value=95 Score=30.24 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=31.4
Q ss_pred HHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCCC
Q 017874 331 LRDYSILLYHCGLYEQSLQYLKFYQAQWYNISVT 364 (364)
Q Consensus 331 ~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~~ 364 (364)
.-+-++=++..|+|.+|.+-+..|+..+||+.-|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~ 177 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT 177 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc
Confidence 6888999999999999999999999999999754
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=24.52 E-value=91 Score=22.61 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=24.8
Q ss_pred hHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 335 SILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 335 GlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
.-+|.+.++|+.|+..++..+...|++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 29 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP 29 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc
Confidence 3578999999999999999999999864
No 172
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.27 E-value=2.2e+02 Score=27.83 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=51.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-C---hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874 307 RFGDMRCALAACERLILLES-D---AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS 362 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-d---p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~ 362 (364)
..|+++.|-....++..=.| + |.-.--.|+.+..+|..++|-.-|+..+.++|+++
T Consensus 190 ~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 190 AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 78899999999999999888 3 56789999999999999999999999999999864
No 173
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.97 E-value=1.4e+02 Score=31.38 Aligned_cols=49 Identities=20% Similarity=0.042 Sum_probs=40.0
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl 355 (364)
...++++||...|..+.++| +-...---|-++-++|+.++|+-.+..-+
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 67799999999999999999 43444567999999999999976655443
No 174
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=23.90 E-value=1.4e+02 Score=30.09 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=31.6
Q ss_pred cccccCcCCHHHHHHHHHHHhccCC--ChH-HHHHHhHHHHHcCChHH
Q 017874 302 VWNSVRFGDMRCALAACERLILLES--DAK-ELRDYSILLYHCGLYEQ 346 (364)
Q Consensus 302 ~~~~lr~~d~~~AL~a~ErLllL~P--dp~-e~RDrGlLl~~lg~~~~ 346 (364)
|....+.|-++.|+..|-.|+.|+| ||. -+-=.-.+-.+.+.|+-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~ 157 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQW 157 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHH
Confidence 3344489999999999999999999 686 33333444445566643
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=22.92 E-value=89 Score=22.31 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.4
Q ss_pred HHHcCChHHHHHHHHHHHHHhcCc
Q 017874 338 LYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 338 l~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
+.+.|+|.+|+..++..++..|+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~ 24 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN 24 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC
Confidence 467899999999999999999975
No 176
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=22.70 E-value=2.4e+02 Score=25.32 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=42.0
Q ss_pred CcCCHHHHHHHHHHHhccCCCh-----HHHHHHhHHHHHcCChHHHHHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLESDA-----KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp-----~e~RDrGlLl~~lg~~~~A~~dL~~fl~ 356 (364)
=+|+-+.||.-.++.+.|..+- ...=.||+||-..|+-+.|..|++.-.+
T Consensus 89 Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 89 LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence 4779999999999999999641 2567899999999999999999987644
No 177
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=22.29 E-value=1.5e+02 Score=20.20 Aligned_cols=25 Identities=8% Similarity=-0.039 Sum_probs=20.6
Q ss_pred HhHHHHHcCChHHHHHHHHHHHHHh
Q 017874 334 YSILLYHCGLYEQSLQYLKFYQAQW 358 (364)
Q Consensus 334 rGlLl~~lg~~~~A~~dL~~fl~~~ 358 (364)
.|-+-...++|.+|++|++.+++..
T Consensus 7 Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 7 LGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4667778899999999999988753
No 178
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=21.33 E-value=2.3e+02 Score=32.18 Aligned_cols=54 Identities=17% Similarity=-0.013 Sum_probs=47.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
..||.++++.+-=..-.|+| |+..|--.+-+..++|.+..|.-....-+...|.
T Consensus 185 qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~ 239 (895)
T KOG2076|consen 185 QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS 239 (895)
T ss_pred HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 45799999999999999999 7888999999999999999999888887766654
No 179
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=21.33 E-value=1.8e+02 Score=28.30 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=41.5
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFY 354 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~f 354 (364)
+.|+++.|-...--.+.|.| +|.-.=-.|+.|+=.|+++.|...|..-
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 67899999999999999999 7888889999999999999998877543
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=20.67 E-value=3e+02 Score=26.20 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHhccCC--C-h----HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874 309 GDMRCALAACERLILLES--D-A----KELRDYSILLYHCGLYEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 309 ~d~~~AL~a~ErLllL~P--d-p----~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~ 360 (364)
||++.|+.+.++.+-+.- + + .-.+..|.++.++|+|++|++.++......-+
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 589999999988887753 2 2 25689999999999999999999888765433
No 181
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=20.60 E-value=1.3e+02 Score=33.28 Aligned_cols=54 Identities=13% Similarity=-0.086 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874 308 FGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI 361 (364)
Q Consensus 308 ~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~ 361 (364)
.+..+.|++.+|+.|.-.|| +..+--.|-++.+.++.+.|......=+..||++
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 56788999999999999997 7799999999999999999998877777788875
No 182
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.54 E-value=2e+02 Score=23.61 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=36.6
Q ss_pred HHHHHHHHhccCCChHHHHHHhHHHHHcCChHHH---HHHHHHHHHHh
Q 017874 314 ALAACERLILLESDAKELRDYSILLYHCGLYEQS---LQYLKFYQAQW 358 (364)
Q Consensus 314 AL~a~ErLllL~Pdp~e~RDrGlLl~~lg~~~~A---~~dL~~fl~~~ 358 (364)
=...+++||.-.|+++.+=+.+.|..+=+.|+.| ..||+..+..|
T Consensus 11 DR~~vd~Ll~~~p~d~~L~eLARL~iRY~gFPGA~diq~DL~kiL~~W 58 (90)
T PF11691_consen 11 DREIVDRLLAGEPTDYNLAELARLRIRYQGFPGARDIQKDLDKILQKW 58 (90)
T ss_pred hHHHHHHHHcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 3467889999999888889999999999888888 46777777665
No 183
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=20.47 E-value=1.7e+02 Score=33.90 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=43.4
Q ss_pred CcCCHHHHHHHHHHHhccCCChH-HHHHHhHHHHHcCC-hHHHHHHHHHHHHHhcC
Q 017874 307 RFGDMRCALAACERLILLESDAK-ELRDYSILLYHCGL-YEQSLQYLKFYQAQWYN 360 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~Pdp~-e~RDrGlLl~~lg~-~~~A~~dL~~fl~~~~~ 360 (364)
+..+|+.|+.-++..|.++||+| .+=..|+.+..+|. .+.|..-.-.-.+.-||
T Consensus 14 ~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpd 69 (1238)
T KOG1127|consen 14 RNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPD 69 (1238)
T ss_pred hhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChh
Confidence 55699999999999999999887 89999999999998 77776554444444443
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.28 E-value=2.9e+02 Score=27.51 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=37.5
Q ss_pred CcCCHHHHHHHHHHHhccCC--ChHHHHHHhHHHHHcCChHHHHHHHHHH
Q 017874 307 RFGDMRCALAACERLILLES--DAKELRDYSILLYHCGLYEQSLQYLKFY 354 (364)
Q Consensus 307 r~~d~~~AL~a~ErLllL~P--dp~e~RDrGlLl~~lg~~~~A~~dL~~f 354 (364)
+-+.|.-.+.+..-++.-+| +|..+|-.|.+-.|.|+...|-.+++..
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44566666666766677775 7999999999999999999998776643
Done!