Query 017875
Match_columns 364
No_of_seqs 170 out of 1142
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 8.7E-57 1.9E-61 443.0 25.0 325 37-361 1-334 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 4.4E-56 9.5E-61 442.7 23.5 286 37-362 5-309 (451)
3 PRK11412 putative uracil/xanth 100.0 3.6E-51 7.8E-56 411.2 29.0 280 48-362 8-304 (433)
4 TIGR03616 RutG pyrimidine util 100.0 1.1E-47 2.5E-52 387.0 30.3 287 34-362 16-309 (429)
5 PRK10720 uracil transporter; P 100.0 1.1E-47 2.4E-52 387.1 27.6 271 36-359 2-287 (428)
6 TIGR00801 ncs2 uracil-xanthine 100.0 2.5E-46 5.5E-51 376.4 28.8 277 44-360 1-297 (415)
7 PF00860 Xan_ur_permease: Perm 100.0 6.8E-47 1.5E-51 377.8 20.8 280 48-360 1-295 (389)
8 TIGR03173 pbuX xanthine permea 100.0 1.2E-44 2.6E-49 363.5 25.6 267 54-362 1-282 (406)
9 COG2252 Xanthine/uracil/vitami 100.0 1.4E-27 2.9E-32 237.2 24.4 283 33-360 4-310 (436)
10 TIGR00843 benE benzoate transp 99.9 5.6E-25 1.2E-29 217.7 25.6 254 49-355 22-277 (395)
11 PF03594 BenE: Benzoate membra 99.9 2.2E-22 4.8E-27 196.4 24.0 256 49-356 6-262 (378)
12 COG3135 BenE Uncharacterized p 99.9 8.2E-21 1.8E-25 182.1 21.2 253 49-356 21-277 (402)
13 COG0659 SUL1 Sulfate permease 99.5 8.7E-12 1.9E-16 129.9 24.9 259 47-362 21-310 (554)
14 PRK11660 putative transporter; 99.3 1.3E-09 2.7E-14 114.5 25.3 270 47-362 29-341 (568)
15 TIGR00815 sulP high affinity s 99.2 8.5E-09 1.8E-13 108.2 24.3 273 47-362 14-321 (563)
16 PF00916 Sulfate_transp: Sulfa 98.0 6.5E-06 1.4E-10 78.5 4.8 176 163-363 2-210 (280)
17 KOG0236 Sulfate/bicarbonate/ox 97.9 0.00053 1.2E-08 73.5 18.6 262 65-362 92-389 (665)
18 TIGR00834 ae anion exchange pr 96.8 0.46 9.9E-06 52.6 24.3 280 58-359 375-717 (900)
19 PF11840 DUF3360: Protein of u 96.6 0.1 2.2E-06 51.9 16.0 274 35-358 53-347 (492)
20 KOG1172 Na+-independent Cl/HCO 96.5 1 2.2E-05 49.2 23.7 274 55-358 363-692 (876)
21 TIGR00843 benE benzoate transp 88.3 10 0.00023 38.4 13.2 144 70-249 244-394 (395)
22 PF03594 BenE: Benzoate membra 66.0 1.5E+02 0.0034 29.9 15.0 166 47-248 205-377 (378)
23 TIGR00931 antiport_nhaC Na+/H+ 62.1 1.3E+02 0.0028 31.1 12.4 163 166-349 179-360 (454)
24 PF00955 HCO3_cotransp: HCO3- 59.1 12 0.00027 39.1 4.4 134 212-358 255-397 (510)
25 COG0659 SUL1 Sulfate permease 53.6 1.6E+02 0.0035 31.2 11.7 123 91-251 286-410 (554)
26 PRK11660 putative transporter; 50.0 3.4E+02 0.0073 28.7 15.3 83 88-194 314-396 (568)
27 PF06946 Phage_holin_5: Phage 40.2 53 0.0011 26.4 4.2 35 216-250 21-55 (93)
28 PF00860 Xan_ur_permease: Perm 39.9 3.2E+02 0.0069 27.3 11.0 97 70-189 253-350 (389)
29 TIGR00815 sulP high affinity s 39.9 4.8E+02 0.01 27.6 14.9 83 88-194 294-376 (563)
30 COG2985 Predicted permease [Ge 37.9 33 0.00072 35.7 3.5 39 149-190 398-444 (544)
31 PF04172 LrgB: LrgB-like famil 37.2 94 0.002 28.9 6.1 78 167-250 11-94 (215)
32 PF01914 MarC: MarC family int 36.2 1.2E+02 0.0025 27.8 6.5 75 108-197 118-200 (203)
33 PF11821 DUF3341: Protein of u 33.3 1.5E+02 0.0033 26.5 6.6 31 270-303 78-108 (173)
34 PF02162 XYPPX: XYPPX repeat ( 32.6 24 0.00052 18.7 0.8 7 12-18 8-14 (15)
35 KOG1924 RhoA GTPase effector D 31.1 48 0.001 36.5 3.4 16 34-49 615-633 (1102)
36 COG3949 Uncharacterized membra 30.9 5.5E+02 0.012 25.6 11.3 73 151-223 41-135 (349)
37 PF05977 MFS_3: Transmembrane 29.6 6.8E+02 0.015 26.3 15.8 130 43-187 216-348 (524)
38 PF06166 DUF979: Protein of un 28.7 5.6E+02 0.012 25.1 9.9 52 293-345 159-210 (308)
39 COG3817 Predicted membrane pro 28.5 4.3E+02 0.0092 25.5 8.8 127 173-324 50-194 (313)
40 PLN00028 nitrate transmembrane 28.3 6.4E+02 0.014 25.5 15.1 39 73-111 63-105 (476)
41 PRK00968 tetrahydromethanopter 27.9 78 0.0017 29.4 3.8 39 314-352 195-233 (240)
42 TIGR03173 pbuX xanthine permea 27.6 3.3E+02 0.0072 27.3 8.8 76 86-183 254-329 (406)
43 PRK10711 hypothetical protein; 27.5 2.1E+02 0.0046 26.9 6.8 71 175-251 31-106 (231)
44 PRK11663 regulatory protein Uh 27.1 4.9E+02 0.011 25.8 9.9 38 66-104 44-81 (434)
45 TIGR00659 conserved hypothetic 26.6 2.5E+02 0.0054 26.3 7.0 76 169-250 23-104 (226)
46 COG4129 Predicted membrane pro 26.6 6.4E+02 0.014 25.0 10.8 79 88-187 14-92 (332)
47 PF00916 Sulfate_transp: Sulfa 25.5 36 0.00078 32.1 1.3 7 94-100 23-29 (280)
48 TIGR01299 synapt_SV2 synaptic 25.5 9.4E+02 0.02 26.5 12.8 39 75-113 196-238 (742)
49 PRK05122 major facilitator sup 25.1 2.3E+02 0.0049 27.5 7.0 62 52-113 19-87 (399)
50 PRK04288 antiholin-like protei 23.9 3.2E+02 0.007 25.7 7.2 70 175-250 36-110 (232)
51 KOG1292 Xanthine/uracil transp 23.7 4E+02 0.0087 27.9 8.4 148 83-252 303-464 (510)
52 PRK15034 nitrate/nitrite trans 23.7 8.3E+02 0.018 25.3 13.5 68 48-115 33-108 (462)
53 COG1346 LrgB Putative effector 22.7 3.7E+02 0.0079 25.3 7.3 79 167-251 24-108 (230)
54 COG3493 CitS Na+/citrate sympo 22.6 8.4E+02 0.018 24.9 10.8 46 144-192 111-158 (438)
55 PF15471 TMEM171: Transmembran 21.4 82 0.0018 30.3 2.8 15 10-24 220-234 (319)
56 PRK10739 putative antibiotic t 20.0 3.6E+02 0.0079 24.5 6.7 30 168-197 156-192 (197)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.7e-57 Score=442.98 Aligned_cols=325 Identities=51% Similarity=0.887 Sum_probs=305.5
Q ss_pred cccccCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHHHHHHHHHHhccCcceEeccc
Q 017875 37 LQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDK-GRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPS 115 (364)
Q Consensus 37 ~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~-~~li~at~~~sGI~Tllq~~~G~rlPiv~gps 115 (364)
+.|+++|.|||...+++|+||++.|+++++++|.++.+++|.+++|. +.+||+++|++||.|++|+++|.|||++||+|
T Consensus 1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S 80 (510)
T KOG1292|consen 1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS 80 (510)
T ss_pred CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence 36999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCCCCCCccc----cccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhhh
Q 017875 116 AAFTLPVLSIINDYNDGSFTSEHD----RFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGL 191 (364)
Q Consensus 116 fa~l~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGlsl 191 (364)
|+|++|..++.....+.|..++++ +|...+++++||.++++++++++|++|+.+++.|++.|+.+.+.++++|+++
T Consensus 81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l 160 (510)
T KOG1292|consen 81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL 160 (510)
T ss_pred eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence 999999999998777777665555 7888999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccchhHhHHHHHHHHHHH--hhhhcc--cchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCcccccccc
Q 017875 192 FMRGFPLLGNCVEIGLPMLVLLVICQQY--LKRLHP--KAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSC 267 (364)
Q Consensus 192 ~~~~~~~~g~~~~v~l~~l~~~iil~~~--~k~~~~--~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~~~~~ 267 (364)
+..+...++.+|.++++.+++.+++++| .++..+ ++++.++++++++++.+.|++|.++..+|++|.++..++.++
T Consensus 161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~ 240 (510)
T KOG1292|consen 161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC 240 (510)
T ss_pred HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence 9999999999999999999999999999 533332 447799999999999999999999999999999888999999
Q ss_pred ccCccccccCCCccccccccccccccchhhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHH
Q 017875 268 RTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSS 347 (364)
Q Consensus 268 ~~d~~~~v~~a~w~~~P~~~~~g~P~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~ 347 (364)
|+|.+..++++||+.+|+|++||.|+||.+..+.+....++.++|++|+|.+++|.++.++++.+.+|||+..||+++++
T Consensus 241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL 320 (510)
T KOG1292|consen 241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLL 320 (510)
T ss_pred cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHH
Confidence 99998888999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred hhhcCCCcchhhhc
Q 017875 348 LLHFLLFIYFSIFS 361 (364)
Q Consensus 348 ~~~fG~~p~~~~~~ 361 (364)
+|+||+-.=+++.+
T Consensus 321 ~gl~G~gtG~Tt~~ 334 (510)
T KOG1292|consen 321 AGLFGTGTGSTTSV 334 (510)
T ss_pred HHhhCCCccceeec
Confidence 99999977666543
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.4e-56 Score=442.70 Aligned_cols=286 Identities=28% Similarity=0.433 Sum_probs=262.2
Q ss_pred cccccCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH----hccCcceEe
Q 017875 37 LQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTVM 112 (364)
Q Consensus 37 ~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~----~G~rlPiv~ 112 (364)
.....|||+|+.|++++|+||+++||++++++|++++++.|+++||+++++|+++|+||++|++|.+ .|.|+|+++
T Consensus 5 ~~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~l 84 (451)
T COG2233 5 IYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYL 84 (451)
T ss_pred ccCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeE
Confidence 3445788889999999999999999999999999999999999999999999999999999999997 567999999
Q ss_pred ccccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHH-HHhhhcCccchHHHHHHHhhhh
Q 017875 113 GPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWG-NLARFFSPIVIVPFVCVVGLGL 191 (364)
Q Consensus 113 gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~-~l~~~fPP~V~G~~i~lIGlsl 191 (364)
|+||+++.|++++..+++ .+++.++|+++++|+++++++. +++ |++|+|||+|+|+++++||++|
T Consensus 85 G~sFafi~p~i~~~~~~g------------~~~~~~~G~ii~ag~~~~li~~--~~~~~l~rlfPPvVtG~Vi~~IGlsL 150 (451)
T COG2233 85 GSSFAFVAPMIAIGGTTG------------DGIAALLGGIIAAGLVYFLISP--IVKIRLARLFPPVVTGPVVLVIGLSL 150 (451)
T ss_pred echHHHHHHHHHHHhccC------------CchHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCceEEeEeeeehhhh
Confidence 999999999999887653 3589999999999999999997 467 9999999999999999999999
Q ss_pred hhhhccccc--------------cccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCC
Q 017875 192 FMRGFPLLG--------------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYN 257 (364)
Q Consensus 192 ~~~~~~~~g--------------~~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~ 257 (364)
.++++++++ +++.+++.++++++++++|.|++ +|++++|+|+++||++++++|
T Consensus 151 ~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~g~-------~~~i~ILiGlv~G~~la~~~G------ 217 (451)
T COG2233 151 APVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGKGF-------LRRIPILIGLVVGYLLALFMG------ 217 (451)
T ss_pred HHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHhC------
Confidence 999998743 14678899999999999998654 889999999999999999998
Q ss_pred CCccccccccccCccccccCCCccccccccccccccchhhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCch
Q 017875 258 NVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRS 337 (364)
Q Consensus 258 ~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~~~g~P~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rg 337 (364)
++||+. +.+++||++|.+++||. +|||.++++++++++++++|++||+.|+++++|++-.++++++|+
T Consensus 218 ----------~vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg 285 (451)
T COG2233 218 ----------MVDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRRG 285 (451)
T ss_pred ----------CcCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccccc
Confidence 469887 99999999999999999 999999999999999999999999999999999755456999999
Q ss_pred hHHHhHHHHHhhhcCCCcchhhhcc
Q 017875 338 IGLQVLSLSSLLHFLLFIYFSIFSH 362 (364)
Q Consensus 338 i~~dGl~t~~~~~fG~~p~~~~~~~ 362 (364)
+++||++|+++++||++|+| +|+|
T Consensus 286 ~~aDGlat~iag~fg~~p~T-tfaq 309 (451)
T COG2233 286 LLADGLATLIAGLFGGFPNT-TFAQ 309 (451)
T ss_pred eeeccHHHHHHHhcCCCCCC-chhh
Confidence 99999999999999999994 5554
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=3.6e-51 Score=411.24 Aligned_cols=280 Identities=19% Similarity=0.295 Sum_probs=237.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHh
Q 017875 48 PQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIN 127 (364)
Q Consensus 48 ~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~ 127 (364)
.+++++|+||+++|+++++++|+++++++|+|++|+.+++|+++++|||+|++|+++|+|||++||+||+|++++++++.
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~ 87 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITL 87 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred hcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhhhhhhhcccc-cc-----
Q 017875 128 DYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL-GN----- 201 (364)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~~~-g~----- 201 (364)
.....+. + +...++..+|+.+++|++++++|++++++|+||+|||+|+|+++++||++|++.+++++ |.
T Consensus 88 ~~~~~g~--~---~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~ 162 (433)
T PRK11412 88 GEASRGT--P---INDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIA 162 (433)
T ss_pred cccccCc--c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCc
Confidence 2110000 0 00123344557999999999999999999999999999999999999999999998864 21
Q ss_pred ---------ccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHH-HHHhccCCCCCccccccccccCc
Q 017875 202 ---------CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAA-ILTAAGAYNNVPEQTKLSCRTDR 271 (364)
Q Consensus 202 ---------~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~-~lg~~g~~~~~~~~~~~~~~~d~ 271 (364)
++.+++.++++++.++++.|+ ++|++|+|+|+++||+++. .+| + |+
T Consensus 163 ~~~~~~~~~~~~~a~~~l~~il~~~~~~~g-------~~~~~svLiGiv~G~v~a~~~~g----------------~-d~ 218 (433)
T PRK11412 163 DPNGKIQLPPFGLSVAVMCLVLAMIIFLPQ-------RIARYSLLVGTIVGWILWAFCFP----------------S-SH 218 (433)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHhC----------------C-Cc
Confidence 234666677777777777654 5899999999999999976 443 3 66
Q ss_pred cccccCCCcccccccccccccc-chhhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHhhh
Q 017875 272 SYLLSSAPWIKVPYPFQWGTPI-FRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSLLH 350 (364)
Q Consensus 272 ~~~v~~a~w~~~P~~~~~g~P~-f~~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~~~ 350 (364)
+. +.+++|.. ++||.|. ||+++++++++++++++.|++||+.+++|.++++.+++++++|++++||++|+++|+
T Consensus 219 ~~-v~~a~w~~----~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~lagl 293 (433)
T PRK11412 219 SL-SGELHWQW----FPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVP 293 (433)
T ss_pred ch-hccCCcee----ecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHh
Confidence 64 67888854 4589995 999999999999999999999999999999987655588999999999999999999
Q ss_pred cCCCcchhhhcc
Q 017875 351 FLLFIYFSIFSH 362 (364)
Q Consensus 351 fG~~p~~~~~~~ 362 (364)
||++|+ ++|||
T Consensus 294 fg~~p~-tt~sq 304 (433)
T PRK11412 294 LAVIPF-SPFVS 304 (433)
T ss_pred cCCCCC-Cchhh
Confidence 999999 55554
No 4
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=1.1e-47 Score=387.04 Aligned_cols=287 Identities=23% Similarity=0.300 Sum_probs=241.2
Q ss_pred ccccccccCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH-hccCcceEe
Q 017875 34 LQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL-FGTRLPTVM 112 (364)
Q Consensus 34 ~~~~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~-~G~rlPiv~ 112 (364)
.++..|++|||||+++++++|+||+++|+++++++|+++ |+|++ +++++|||+|++|+. +|+|+|++|
T Consensus 16 ~~~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl~~~-------~tl~~sGi~TllQ~~~~G~rlP~v~ 84 (429)
T TIGR03616 16 LEHHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GFDPN-------LTILMSGIGTLLFFLITGGRVPSYL 84 (429)
T ss_pred CcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHh-------HHHHHHHHHHHHHHHHhCCCceeEE
Confidence 355789999999999999999999999999999999997 67764 579999999999974 799999999
Q ss_pred ccccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhH---HHHhhhcCccchHHHHHHHhh
Q 017875 113 GPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAW---GNLARFFSPIVIVPFVCVVGL 189 (364)
Q Consensus 113 gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~---~~l~~~fPP~V~G~~i~lIGl 189 (364)
|+||+|+.++.++... ...+. ..++++++|+++++|++++++++++.+ +|++|+|||+|+|+++++||+
T Consensus 85 G~sf~f~~~~~~~~~~-~~~~~-------~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGl 156 (429)
T TIGR03616 85 GSSAAFVGAVIAATGY-NGQGT-------NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGL 156 (429)
T ss_pred cCcHHHHHHHHHHHhh-cccCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999988765422 11111 136899999999999999999998654 889999999999999999999
Q ss_pred hhhhhhcccccc---ccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCccccccc
Q 017875 190 GLFMRGFPLLGN---CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLS 266 (364)
Q Consensus 190 sl~~~~~~~~g~---~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~~~~ 266 (364)
++++.++++.+. ....++++++.+++++++.|++ +|++++|+|+++||++|+.++.. ++..
T Consensus 157 sL~~vg~~~~~~~~~~~~~al~tl~~i~l~~l~~~~~-------l~~~avLiGivvG~iva~~l~~~---------~g~~ 220 (429)
T TIGR03616 157 NLAPIAVKSVSASGFDSWMAVLTILCIGAVAVFTRGM-------LQRLLILVGLIAAYLAYFILTNV---------FGLG 220 (429)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhh---------cCCC
Confidence 999999987542 1235777777777787777654 78899999999999999987421 1111
Q ss_pred cccCccccccCCCccccccccccccccchhhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHH
Q 017875 267 CRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLS 346 (364)
Q Consensus 267 ~~~d~~~~v~~a~w~~~P~~~~~g~P~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~ 346 (364)
+++|++. +.+++|+++| +|+.|+||+++++++++.++++++|++||+.++++..|++ . +++++|++++||++|+
T Consensus 221 ~~vd~s~-v~~a~~~~lP---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~-~-~~~i~r~l~adGl~t~ 294 (429)
T TIGR03616 221 KAVDFSP-ISQAAWFGLP---NFHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRN-L-DPYMGRAFVGDGLATM 294 (429)
T ss_pred ccccCcc-cccCccccCC---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-C-CchhccchhhhhHHHH
Confidence 2578875 7889999999 6788999999999999999999999999999999998843 3 3469999999999999
Q ss_pred HhhhcCCCcchhhhcc
Q 017875 347 SLLHFLLFIYFSIFSH 362 (364)
Q Consensus 347 ~~~~fG~~p~~~~~~~ 362 (364)
+++++|++|+++| ++
T Consensus 295 ~agl~g~~p~tt~-~e 309 (429)
T TIGR03616 295 LSGSVGGTGVTTY-AE 309 (429)
T ss_pred HHHhcCCCCCcce-ee
Confidence 9999999998655 54
No 5
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=1.1e-47 Score=387.14 Aligned_cols=271 Identities=23% Similarity=0.324 Sum_probs=237.0
Q ss_pred ccccccCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh-ccCcceEecc
Q 017875 36 QLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF-GTRLPTVMGP 114 (364)
Q Consensus 36 ~~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~-G~rlPiv~gp 114 (364)
+..|++|||||+++++++|+||+++|+++++++|+++ |+|+++ ++++||++|++|++. |.|+|++||+
T Consensus 2 ~~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl~~~~-------~l~~sGi~TliQ~~~~g~rlP~~~G~ 70 (428)
T PRK10720 2 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HINPAT-------VLLFNGIGTLLYLFICKGKIPAYLGS 70 (428)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHH-------HHHHHHHHHHHHHHhccCccceEEeC
Confidence 5679999999999999999999999999999999987 788743 789999999999985 5699999999
Q ss_pred ccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhh--h-HHHHhhhcCccchHHHHHHHhhhh
Q 017875 115 SAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSG--A-WGNLARFFSPIVIVPFVCVVGLGL 191 (364)
Q Consensus 115 sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg--~-~~~l~~~fPP~V~G~~i~lIGlsl 191 (364)
||+|++++.++.. .+|++++|+++++|+++++++++. + ++|++|+|||.|+|+++++||+++
T Consensus 71 sfa~i~~~~~~~~---------------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L 135 (428)
T PRK10720 71 SFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLEL 135 (428)
T ss_pred cHHHHHHHHHHHH---------------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHh
Confidence 9999999887653 369999999999999999999972 2 678999999999999999999999
Q ss_pred hhhhccccc-----------cccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCc
Q 017875 192 FMRGFPLLG-----------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVP 260 (364)
Q Consensus 192 ~~~~~~~~g-----------~~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~ 260 (364)
.+.++.+.| .++.+++++++++++++++.|| ++|++++|+|+++||++++.+|.
T Consensus 136 ~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~kg-------~~~~~~iLigIvvG~ila~~lG~-------- 200 (428)
T PRK10720 136 AGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFRG-------FLAIIPILIGVLVGYALSFAMGM-------- 200 (428)
T ss_pred HHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhcc-------HHHHhHHHHHHHHHHHHHHHhcC--------
Confidence 999987543 1356777888877777777755 47889999999999999999983
Q ss_pred cccccccccCccccccCCCccccccccccccccchhhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHH
Q 017875 261 EQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGL 340 (364)
Q Consensus 261 ~~~~~~~~~d~~~~v~~a~w~~~P~~~~~g~P~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~ 340 (364)
.|++. +.+++|+++|. |+.|+||+..++.+++.++++++|++||+.++++..+++..+++++||++.+
T Consensus 201 --------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~a 268 (428)
T PRK10720 201 --------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFA 268 (428)
T ss_pred --------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhh
Confidence 46654 67789999994 6779999999999999999999999999999999988643456889999999
Q ss_pred HhHHHHHhhhcCCCcchhh
Q 017875 341 QVLSLSSLLHFLLFIYFSI 359 (364)
Q Consensus 341 dGl~t~~~~~fG~~p~~~~ 359 (364)
||++|+++++||++|+++|
T Consensus 269 dGlatii~glfG~~p~tty 287 (428)
T PRK10720 269 NGLSTVISGFFGSTPNTTY 287 (428)
T ss_pred hhHHHHHHHhcCCCCcccc
Confidence 9999999999999999663
No 6
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=2.5e-46 Score=376.40 Aligned_cols=277 Identities=26% Similarity=0.407 Sum_probs=244.6
Q ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhc---cCcceEeccccchHH
Q 017875 44 NPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFG---TRLPTVMGPSAAFTL 120 (364)
Q Consensus 44 ~pp~~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G---~rlPiv~gpsfa~l~ 120 (364)
|||+++++++|+||+++|+++++++|++++++. +|++|+++++|++++++|++|++|++.. .|+|.++|+||+|++
T Consensus 1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~ 79 (415)
T TIGR00801 1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVS 79 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHH
Confidence 689999999999999999999999999999999 9999999999999999999999999753 347999999999999
Q ss_pred HHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhh--h-hHHHHhhhcCccchHHHHHHHhhhhhhhhcc
Q 017875 121 PVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYS--G-AWGNLARFFSPIVIVPFVCVVGLGLFMRGFP 197 (364)
Q Consensus 121 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~t--g-~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~ 197 (364)
+...+..+ +++++++|+++++|+++++++.+ + .++|++|+|||.|+|.++++||+++++.+++
T Consensus 80 ~~~~~~~~--------------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~ 145 (415)
T TIGR00801 80 PMIAIGSG--------------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVK 145 (415)
T ss_pred HHHHHHhc--------------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHH
Confidence 88876543 46999999999999999999985 3 3578999999999999999999999999998
Q ss_pred ccc--------------cccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCcccc
Q 017875 198 LLG--------------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQT 263 (364)
Q Consensus 198 ~~g--------------~~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~ 263 (364)
+.+ .++.+++.+++++++++++.|+ ++|++++|+|+++||++++.+|.
T Consensus 146 ~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~g-------~~~~~aiLigiv~g~i~a~~lg~----------- 207 (415)
T TIGR00801 146 MAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGKG-------FLKSISILIGILVGYILALFMGI----------- 207 (415)
T ss_pred HhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHcCC-----------
Confidence 752 1245777788877777777765 47889999999999999999983
Q ss_pred ccccccCccccccCCCccccccccccccccchhhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhH
Q 017875 264 KLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVL 343 (364)
Q Consensus 264 ~~~~~~d~~~~v~~a~w~~~P~~~~~g~P~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl 343 (364)
+|+++ +.++||+++|.+++|| |+||++.+..++++++++++|++|++.++++.+|++..+++++||++.+||+
T Consensus 208 -----~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl 280 (415)
T TIGR00801 208 -----VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGL 280 (415)
T ss_pred -----ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhH
Confidence 46654 6778999999988888 7999999999999999999999999999999998744337889999999999
Q ss_pred HHHHhhhcCCCcchhhh
Q 017875 344 SLSSLLHFLLFIYFSIF 360 (364)
Q Consensus 344 ~t~~~~~fG~~p~~~~~ 360 (364)
+|+++|+||++|+++|-
T Consensus 281 ~~i~aglfG~~p~t~~s 297 (415)
T TIGR00801 281 ATLLAGLFGGFPNTTFA 297 (415)
T ss_pred HHHHHHhcCCCCCcchh
Confidence 99999999999997753
No 7
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=6.8e-47 Score=377.76 Aligned_cols=280 Identities=30% Similarity=0.452 Sum_probs=203.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH-hccCcceEeccccchHHHHHHHH
Q 017875 48 PQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL-FGTRLPTVMGPSAAFTLPVLSII 126 (364)
Q Consensus 48 ~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~-~G~rlPiv~gpsfa~l~~~~~i~ 126 (364)
+|++++|+||+++|+++++++|.+++++.|+ ++|++.+++++++++|++|++|++ +|+|+|+++|+|++++.......
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 4899999999999999999999999999899 778889999999999999999999 89999999999999888333222
Q ss_pred hhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhhhhhhhccccccc----
Q 017875 127 NDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNC---- 202 (364)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~~~g~~---- 202 (364)
..+ ++++.++++++|+++++|++++++++++.++|++|+|||.|.|.++++||+++.+.++++.+..
T Consensus 80 g~~---------~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~ 150 (389)
T PF00860_consen 80 GMA---------ESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNP 150 (389)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---B
T ss_pred ccc---------cchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccc
Confidence 110 1234689999999999999999999999999999999999999999999999999999875422
Q ss_pred ----------cchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCccccccccccCcc
Q 017875 203 ----------VEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRS 272 (364)
Q Consensus 203 ----------~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~~~~~~~d~~ 272 (364)
..+++.+++..++++.+.| +++|++++++|+++||++++++|.. |++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ailigi~~g~i~~~~~g~~----------------~~~ 207 (389)
T PF00860_consen 151 DGLLVGDGKNLGLAVLTLLFILLLSLFLK-------GFLRKGAILIGIIAGWIVAAILGVV----------------DFS 207 (389)
T ss_dssp TT-B---HHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHHT----------------TSS
T ss_pred cccccccccccccccccchhhhhhhhhhh-------hhcccccchhhhhhhhhhhhccccc----------------ccC
Confidence 2344555555556655544 4578899999999999999999953 555
Q ss_pred ccccCCCccccccccccccccchhhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHhhhcC
Q 017875 273 YLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSLLHFL 352 (364)
Q Consensus 273 ~~v~~a~w~~~P~~~~~g~P~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~~~fG 352 (364)
+.+.++||+++|++++|++|+||+.++++++.+++++++|++||+.+++|.+|+++++++++||++.+||++|+++++||
T Consensus 208 ~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G 287 (389)
T PF00860_consen 208 PSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFG 287 (389)
T ss_dssp H-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhc
Confidence 32678999999999999999999999999999999999999999999999999766568999999999999999999999
Q ss_pred CCcchhhh
Q 017875 353 LFIYFSIF 360 (364)
Q Consensus 353 ~~p~~~~~ 360 (364)
++|+++|-
T Consensus 288 ~~~~t~~~ 295 (389)
T PF00860_consen 288 TSPTTTYS 295 (389)
T ss_dssp ---EEE-H
T ss_pred CCCCcccc
Confidence 99997764
No 8
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=1.2e-44 Score=363.47 Aligned_cols=267 Identities=29% Similarity=0.445 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH----HhccCcceEeccccchHHHHHHHHhhc
Q 017875 54 AFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQT----LFGTRLPTVMGPSAAFTLPVLSIINDY 129 (364)
Q Consensus 54 GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~----~~G~rlPiv~gpsfa~l~~~~~i~~~~ 129 (364)
|+||+++|+++++++|++++++.|+|++|+..+++++++++||+|++|+ .+|+|+|+++|||++++.+...+..+
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~- 79 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG- 79 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh-
Confidence 6899999999999999999999999999999999999999999999998 46899999999999999988766543
Q ss_pred CCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhhhhhhhccccc---------
Q 017875 130 NDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLG--------- 200 (364)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~~~g--------- 200 (364)
++|++++|+++++|+++++++ ++++|++|+|||.|+|.++++||+++.+.++++..
T Consensus 80 -------------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~~ 144 (406)
T TIGR03173 80 -------------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDFG 144 (406)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCccccc
Confidence 479999999999999999999 47899999999999999999999999999886542
Q ss_pred --cccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCccccccccccCccccccCC
Q 017875 201 --NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSA 278 (364)
Q Consensus 201 --~~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~~~~~~~d~~~~v~~a 278 (364)
+++.+++.++++++++.++.|+ ++|++++|+++++||++++.+|. .|++. +.++
T Consensus 145 ~~~~~~l~l~~l~~~il~~~~~~~-------~~~~~aiLi~ivvg~iva~~~g~----------------~~~~~-i~~~ 200 (406)
T TIGR03173 145 SPQNLGLALLTLVIILLLNRFGKG-------FLRSIAVLLGLVVGTIVAAALGM----------------VDFSG-VAEA 200 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhh-------HHHHhHHHHHHHHHHHHHHHhcC----------------CCchh-hccC
Confidence 1345777777777666666544 47889999999999999999974 35554 6678
Q ss_pred CccccccccccccccchhhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHhhhcCCCcchh
Q 017875 279 PWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSLLHFLLFIYFS 358 (364)
Q Consensus 279 ~w~~~P~~~~~g~P~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~~~fG~~p~~~ 358 (364)
+|+++|.+++|+.|+||+..++.++.+++++++|++|+..++++..|+ +.|++++||++.+||++|+++++||++|+++
T Consensus 201 ~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~-~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~ 279 (406)
T TIGR03173 201 PWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGR-PITEKDLAGGLRADGLGSALGGLFNTFPYTS 279 (406)
T ss_pred CeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCchhccchHHhccHHHHHHHHhCCCCCcc
Confidence 999999988899999999999999999999999999999999999885 4567889999999999999999999999876
Q ss_pred hhcc
Q 017875 359 IFSH 362 (364)
Q Consensus 359 ~~~~ 362 (364)
|++
T Consensus 280 -~~~ 282 (406)
T TIGR03173 280 -FSQ 282 (406)
T ss_pred -hhh
Confidence 443
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.4e-27 Score=237.21 Aligned_cols=283 Identities=14% Similarity=0.144 Sum_probs=221.5
Q ss_pred cccccccccCCCCC-hhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceE
Q 017875 33 QLQQLQYCIHSNPP-WPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTV 111 (364)
Q Consensus 33 ~~~~~~y~~~d~pp-~~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv 111 (364)
+.-|++|+++||.+ .++|+.+|++++++|.|.+.++|.+++++ |+| ...++.+|++.++++|++++++ +|+|+.
T Consensus 4 ~~~~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~a-g~~---~~av~~AT~l~a~~gs~~mgl~-An~P~a 78 (436)
T COG2252 4 GDLDRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGAA-GMP---VGAVFVATCLAAAIGSIAMGLY-ANLPIA 78 (436)
T ss_pred hHHHHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHhc-CCC---chhHHHHHHHHHHHHHHHHHHH-HcCchh
Confidence 44578999999997 99999999999999999999999999986 676 5788999999999999999998 999999
Q ss_pred eccccchHHHHHHHH--hhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCc-------cchHH
Q 017875 112 MGPSAAFTLPVLSII--NDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSP-------IVIVP 182 (364)
Q Consensus 112 ~gpsfa~l~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP-------~V~G~ 182 (364)
++|.+. +...++.. ..++ .+||+++|+++++|+++++++++|+++|++|.+|. ..+|.
T Consensus 79 lapgmg-lnAfFaftvv~~~g------------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGl 145 (436)
T COG2252 79 LAPGMG-LNAFFAFTVVLGMG------------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGL 145 (436)
T ss_pred hcchhh-HHHHHHHHHHHhcC------------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999993 24444322 2222 57999999999999999999999999999999996 66999
Q ss_pred HHHHHhhhhhhhhccc------cc---c-ccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 017875 183 FVCVVGLGLFMRGFPL------LG---N-CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTA 252 (364)
Q Consensus 183 ~i~lIGlsl~~~~~~~------~g---~-~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~ 252 (364)
++++||+...+..+.+ +| + .+.++++.+++++++ +.||+ +.+++++|+..+++++.+|.
T Consensus 146 Fia~IgL~~~Givv~~~~tlv~LG~~~~p~vll~i~G~~l~~~L--~~~~i---------~Gaili~i~~~t~~g~~~g~ 214 (436)
T COG2252 146 FIALIGLKNAGIVVANPATLVALGDFTSPGVLLAILGLLLIIVL--VSRKI---------KGAILIGILVTTILGIILGI 214 (436)
T ss_pred HHHHHHHhhCCeEEecCcceEEeecCCCchHHHHHHHHHHHHHH--HHhhc---------cHhhhHHHHHHHHHHHHhcc
Confidence 9999999977665533 22 2 356677777777777 66666 38999999999999999984
Q ss_pred ccCCCCCccccccccccCccccccCCCccccccccccccc--cchhhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCC-
Q 017875 253 AGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTP--IFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAP- 329 (364)
Q Consensus 253 ~g~~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~~~g~P--~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~- 329 (364)
... + .+....-|.. .|...+.+.. ...+.++..++.+.+++.+|++|++.++++..|..++
T Consensus 215 ~~~--------------~-~~~~~~~p~~-~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~ 278 (436)
T COG2252 215 DVH--------------F-GGLVGAPPSL-SPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKN 278 (436)
T ss_pred ccc--------------c-cccccCCCCc-cchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCC
Confidence 310 0 0000000000 0111111111 2235666678899999999999999999999987433
Q ss_pred -CcccCCchhHHHhHHHHHhhhcCCCcchhhh
Q 017875 330 -PAHVLSRSIGLQVLSLSSLLHFLLFIYFSIF 360 (364)
Q Consensus 330 -~~~~i~rgi~~dGl~t~~~~~fG~~p~~~~~ 360 (364)
+.+|.+|.+.+|++++++++++|++|+++|-
T Consensus 279 g~~~~~~~al~~D~v~t~~ga~~GtS~~t~yI 310 (436)
T COG2252 279 GKMPRIGKALLADSVATVVGALFGTSTVTAYI 310 (436)
T ss_pred CCccccchHHHHhHHHHHHHHhcCCcchhhhh
Confidence 3579999999999999999999999999875
No 10
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.94 E-value=5.6e-25 Score=217.71 Aligned_cols=254 Identities=17% Similarity=0.171 Sum_probs=201.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHH-h
Q 017875 49 QALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSII-N 127 (364)
Q Consensus 49 ~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~-~ 127 (364)
..+..|+-.+++-+.+.+++-+..+++.|+|++|.++|+++.++.+|++|++|++. +|+|++++|| .|..++. .
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awS----tPGaAll~~ 96 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWS----APGAALLVT 96 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecC----chHHHHHHH
Confidence 57889999999999999988888889999999999999999999999999999986 8999999999 2333322 1
Q ss_pred hcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhhhhhhhccccccccchhH
Q 017875 128 DYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGL 207 (364)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~~~g~~~~v~l 207 (364)
... +.+++++.|+.+++|++.+++|.+|+++|++|++|+.+.+.+++-|.+...-..+....+.+.+++
T Consensus 97 ~~~-----------~~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~ 165 (395)
T TIGR00843 97 GFP-----------GISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICF 165 (395)
T ss_pred hcC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 111 157999999999999999999999999999999999999999988866654444434444554443
Q ss_pred hHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCccccccccccCccccccCCCcccccccc
Q 017875 208 PMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPF 287 (364)
Q Consensus 208 ~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~ 287 (364)
..++..++ .| |+.+++++++++++|.++++.+|.. |.++ ... .+..|
T Consensus 166 ~mll~~l~----~~-------r~~Pr~avl~aLlvG~iva~~~G~~----------------~~~~-~~~--~l~~p--- 212 (395)
T TIGR00843 166 SMLLCWLA----SK-------AFAPRYAMIAALICGIAFSFALGDM----------------NPTD-LDF--KIALP--- 212 (395)
T ss_pred HHHHHHHH----HH-------HhcchHHHHHHHHHHHHHHHHhcCC----------------Cccc-ccc--ccccc---
Confidence 33332222 22 3467799999999999999998843 2221 110 13334
Q ss_pred ccccccchhhHHHHHH-HHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHhhhcCCCc
Q 017875 288 QWGTPIFRASHVFGMI-GAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSLLHFLLFI 355 (364)
Q Consensus 288 ~~g~P~f~~~~il~~~-~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~~~fG~~p 355 (364)
.|..|+||+...+... +.+++++.+++-+-.++.|..|++.+ .|+.+..+|++|+++++||+++
T Consensus 213 ~~~~P~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p----~~~~~~~tGl~sll~ApfGg~~ 277 (395)
T TIGR00843 213 QFIAPDFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAP----AKPIIAAAGLAALFAAFAGGIS 277 (395)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCC----chHHHHHHHHHHHHHhccCCch
Confidence 5667999998888764 99999999999888999999997543 6999999999999999999988
No 11
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.91 E-value=2.2e-22 Score=196.39 Aligned_cols=256 Identities=22% Similarity=0.233 Sum_probs=207.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHhh
Q 017875 49 QALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIND 128 (364)
Q Consensus 49 ~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~~ 128 (364)
.++..|+-.+++-+.+.+++-+..+++.|++++|..+|+.+..+.+|+.|+.-++. +|+|++.++| .|..++..+
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~-yR~Pi~~AWS----tPGaAlL~~ 80 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLR-YRMPIVTAWS----TPGAALLAT 80 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhhcc----hHHHHHHHH
Confidence 57889999999999999888888889999999999999999999999999999985 9999999999 444444332
Q ss_pred cCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhhhhhhhccccccccchhHh
Q 017875 129 YNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLP 208 (364)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~~~g~~~~v~l~ 208 (364)
.. + +++++|+.|+++++|++.+++|.+|+++|+.|++|+.+..-+++-+-+...-..++.+.+++.+...
T Consensus 81 ~~------~----~~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~~ 150 (378)
T PF03594_consen 81 SL------P----GYSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVGP 150 (378)
T ss_pred hc------c----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11 0 2689999999999999999999999999999999999988888887444433334444556666666
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCccccccccccCccccccCCCccccccccc
Q 017875 209 MLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQ 288 (364)
Q Consensus 209 ~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~~ 288 (364)
+++..++..+ +.++++++..+++|.++++..|.. +..+ . .-++..| .
T Consensus 151 ml~~~l~~~r-----------~~pr~av~~al~~g~~~a~~~g~~----------------~~~~-~--~~~~~~p---~ 197 (378)
T PF03594_consen 151 MLAVFLLARR-----------FSPRYAVLAALVAGVAVAALTGQL----------------HPSA-L--QLSLAHP---V 197 (378)
T ss_pred HHHHHHHHHH-----------HcchhHHHHHHHHHHHHHHhcCCC----------------Cccc-c--cccccee---E
Confidence 6666555533 345689999999999999888743 2221 1 1134445 5
Q ss_pred cccccchhhHHHHHH-HHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHhhhcCCCcc
Q 017875 289 WGTPIFRASHVFGMI-GAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSLLHFLLFIY 356 (364)
Q Consensus 289 ~g~P~f~~~~il~~~-~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~~~fG~~p~ 356 (364)
|-.|+||+.+++.+. +.++++|..++..-.++-|..|+++| .|+-+...|+++++.++||+++.
T Consensus 198 ~~~P~Fs~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p----~~~~~~~tGl~s~l~ApfGg~~~ 262 (378)
T PF03594_consen 198 FTTPEFSWSALVSLALPLFIVTMASQNLPGIAVLRAAGYQPP----VNPLITVTGLASLLAAPFGGHAV 262 (378)
T ss_pred EECCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCC----chHHHHHHHHHHHHHhhhchhhh
Confidence 778999999999975 99999999999999999999998654 78999999999999999999764
No 12
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=8.2e-21 Score=182.07 Aligned_cols=253 Identities=23% Similarity=0.241 Sum_probs=207.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHhh
Q 017875 49 QALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIND 128 (364)
Q Consensus 49 ~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~~ 128 (364)
+++..|++.+++-+++..++-+-.+++.|.+++|+++|+.+..+.+|+.|+.-++. +|+|++.+||- |..++...
T Consensus 21 ~~l~ag~va~~vG~~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~-yR~Pv~~aWST----PG~all~a 95 (402)
T COG3135 21 QTLLAGFVAVLVGYASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLR-YRVPVLTAWST----PGAALLVA 95 (402)
T ss_pred hhhhhhhHHheeccCccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hccceeeeecC----ccHHHHHh
Confidence 78999999999999999888888888899999999999999999999999999985 99999999994 44454432
Q ss_pred cCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhhhhhhhcc---ccccccch
Q 017875 129 YNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFP---LLGNCVEI 205 (364)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~---~~g~~~~v 205 (364)
-. -+.++.|+.|+++++|.+.++.|.+|.++|+.|.+||-+..-++.-| +.+.+++ .+..++.+
T Consensus 96 sl----------~g~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGI---LL~F~l~a~~a~~~~p~l 162 (402)
T COG3135 96 SL----------GGLSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGI---LLRFGLKAFKALPTQPLL 162 (402)
T ss_pred cc----------CCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHH---HHHHHHHHHhccCCChHH
Confidence 11 02689999999999999999999999999999999998887777777 5555544 34556666
Q ss_pred hHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCccccccccccCccccccCCCcccccc
Q 017875 206 GLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPY 285 (364)
Q Consensus 206 ~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~ 285 (364)
.+.+++..+++.+ +-++++|+..+++|.+++.+.|.. +. .....-.+.|
T Consensus 163 ~lpmv~~~ll~r~-----------f~pr~aV~aalvvgv~va~~~G~~----------------~~---~~~~~~~~~p- 211 (402)
T COG3135 163 VLPMVLAYLLARV-----------FAPRYAVIAALVVGVLVAALLGDL----------------HT---ALVALEISTP- 211 (402)
T ss_pred HHHHHHHHHHHHH-----------cCchHHHHHHHHHHHHHHHHhCcc----------------cc---cccccccCcc-
Confidence 6666555555522 235699999999999999999843 11 1123345566
Q ss_pred ccccccccchhhHHHHHH-HHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHhhhcCCCcc
Q 017875 286 PFQWGTPIFRASHVFGMI-GAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSLLHFLLFIY 356 (364)
Q Consensus 286 ~~~~g~P~f~~~~il~~~-~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~~~fG~~p~ 356 (364)
.|-.|+||+.+++.+. +.++++|..+.....++-|..|++++ .+--+..+|+.+++++.||++.+
T Consensus 212 --~~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp----~~pl~~~TGl~sll~ApfG~~t~ 277 (402)
T COG3135 212 --TWVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPP----PSPLIVATGLASLLSAPFGGHTV 277 (402)
T ss_pred --eeeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcCCCCC----CchHHHHhHHHHHHhccccccee
Confidence 6888999999999976 99999999999999999999998654 56779999999999999999765
No 13
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.48 E-value=8.7e-12 Score=129.87 Aligned_cols=259 Identities=19% Similarity=0.215 Sum_probs=173.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHH
Q 017875 47 WPQALLLAFQHYIVMLGTTVLISSTLV--PLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLS 124 (364)
Q Consensus 47 ~~~~~~~GlQh~l~m~~~~i~vP~il~--~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~ 124 (364)
++..+++|+.=. .+++|.-++ .+.|.++ ..-+.++-++.++-+++|.+-=.+-||..++..-+..
T Consensus 21 l~~Dl~AGltva------~valP~ama~a~~aGv~p-------~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~ 87 (554)
T COG0659 21 LRGDLLAGLTVA------AVALPLAMAFAIAAGVPP-------EAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAA 87 (554)
T ss_pred hHHHHHHHHHHH------HHHhHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHH
Confidence 567888888743 445565554 3468888 6667778888888888866555688888765444444
Q ss_pred HHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhhhhhhhccc-cc---
Q 017875 125 IINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPL-LG--- 200 (364)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~~-~g--- 200 (364)
+.++.. .++++.+.-+.+++|++++++|..|+ +++.|++|.-|+--++.-||+.++-.-+.. +|
T Consensus 88 ~i~~~~-----------~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 88 VIASLV-----------ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 444110 14789999999999999999999986 999999997776667777777554433321 01
Q ss_pred ------------------ccc---chhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 017875 201 ------------------NCV---EIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNV 259 (364)
Q Consensus 201 ------------------~~~---~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~ 259 (364)
.|+ .++.+++.+++ +.++.. .|..+-|+++++++.+++.++...
T Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~----~~~~~~------~~~P~~liaiv~~t~i~~~~~~~~----- 220 (554)
T COG0659 156 KVSGFWAKVSALFTVLLTINLATLLLGLLTLAILL----FLPRLT------PRIPSPLIALVLGTLIVWIFPLDS----- 220 (554)
T ss_pred cccchHHHHHHHHHhcccccHHHHHHHHHHHHHHH----Hccchh------hhCCcHHHHHHHHHHHHHHhcCCc-----
Confidence 122 22222322222 333321 233568999999999999986320
Q ss_pred ccccccccccCccccccCCCccccccccccccccchh----hHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCC
Q 017875 260 PEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRA----SHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLS 335 (364)
Q Consensus 260 ~~~~~~~~~~d~~~~v~~a~w~~~P~~~~~g~P~f~~----~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~ 335 (364)
+++| .+..+.....+ +|+.|.+++ ..+...+.++++...|+..+-.+.++.+|+ +.+-|
T Consensus 221 -~~~G----~i~~~lp~~~~--------~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d~n 283 (554)
T COG0659 221 -LRYG----EIPGSLPSGLP--------HFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHDSN 283 (554)
T ss_pred -hhcc----cCcccCCcCCC--------cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCC
Confidence 0111 01111111223 344455544 444456688899999999999999998875 34578
Q ss_pred chhHHHhHHHHHhhhcCCCcchhhhcc
Q 017875 336 RSIGLQVLSLSSLLHFLLFIYFSIFSH 362 (364)
Q Consensus 336 rgi~~dGl~t~~~~~fG~~p~~~~~~~ 362 (364)
|-+.++|++|+.+++||++|.++.+|+
T Consensus 284 rELiaqGiaNi~sglfgg~p~~g~~sr 310 (554)
T COG0659 284 RELIAQGIANIASGLFGGIPATGSISR 310 (554)
T ss_pred HHHHHhhHHHHHHHHhCCccccchhHH
Confidence 999999999999999999999988875
No 14
>PRK11660 putative transporter; Provisional
Probab=99.28 E-value=1.3e-09 Score=114.51 Aligned_cols=270 Identities=17% Similarity=0.187 Sum_probs=158.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHH
Q 017875 47 WPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSII 126 (364)
Q Consensus 47 ~~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~ 126 (364)
+..-+.+|+.-.+....-.++... ..|+++ +..+..+-+.+++-+++|..--++.||..+.-.-...+.
T Consensus 29 l~~D~iAGltv~~~~iPq~mayA~----lag~pp-------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~ 97 (568)
T PRK11660 29 FTRDLIAGITVGIIAIPLAMALAI----ASGVPP-------QYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVS 97 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----HcCCCh-------HHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHH
Confidence 678888998865554444333332 258887 445777888888888887666688888863211111122
Q ss_pred hhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhhhhhhhccc--------
Q 017875 127 NDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPL-------- 198 (364)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~~-------- 198 (364)
.+ .+++.+..+.+++|++++++|++|+ +++.+++|.-|+.-++.-+|+...-..+..
T Consensus 98 ~~--------------~~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~ 162 (568)
T PRK11660 98 QQ--------------FGLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAH 162 (568)
T ss_pred HH--------------hhHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 22 3456677789999999999999986 789999998776666666666332222111
Q ss_pred ---------------ccc-cc---chhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 017875 199 ---------------LGN-CV---EIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNV 259 (364)
Q Consensus 199 ---------------~g~-~~---~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~ 259 (364)
+++ +| .+++.++++++++ |++.+ |..+-|+.+++++++++.++..+..-+.
T Consensus 163 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~lll~~----~~~~~------~iP~~li~iiv~t~~~~~~~~~~~~v~~ 232 (568)
T PRK11660 163 VPEHYLEKVGALFQALPTINWGDALIGIVTLGVLILW----PRLKI------RLPGHLPALLAGTAVMGVLNLLGGHVAT 232 (568)
T ss_pred CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH----Hhhcc------cCchHHHHHHHHHHHHHHHhccCCCcee
Confidence 010 22 2333333333332 33211 2245588899999998888643110000
Q ss_pred -cccccccccc-Ccc---ccccCCCccccccccccccc-------cchhhH----HHHHHHHHHHHhHhhhhhHHHHHhH
Q 017875 260 -PEQTKLSCRT-DRS---YLLSSAPWIKVPYPFQWGTP-------IFRASH----VFGMIGAALVTSAESTGTFIAASRF 323 (364)
Q Consensus 260 -~~~~~~~~~~-d~~---~~v~~a~w~~~P~~~~~g~P-------~f~~~~----il~~~~~~lv~~~esiG~~~a~~~~ 323 (364)
...+ +... |-. ......|-+.+| |..| .++|+. +...+.+.++..+|++-...+.++.
T Consensus 233 vg~~~--~~~~~~g~~~~~ip~~~p~~~~p----~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~ 306 (568)
T PRK11660 233 IGSRF--HYVLADGSQGNGIPPLLPQFVLP----WNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGM 306 (568)
T ss_pred ecccc--cccccccccccCCCCCCCCCCCC----ccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 0000 000 000001111222 1111 235443 3445577788888888777777776
Q ss_pred hCCCCCCcccCCchhHHHhHHHHHhhhcCCCcchhhhcc
Q 017875 324 AGATAPPAHVLSRSIGLQVLSLSSLLHFLLFIYFSIFSH 362 (364)
Q Consensus 324 ~g~~~~~~~~i~rgi~~dGl~t~~~~~fG~~p~~~~~~~ 362 (364)
.++ +.+.||-+.++|++|+++++||++|.++.+|+
T Consensus 307 ~~~----~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~sr 341 (568)
T PRK11660 307 TGT----KHSANSELVGQGLGNIVAPFFGGITATAAIAR 341 (568)
T ss_pred cCC----CCCCcHHHHHHhHHHHHHHHhCcccccchHHH
Confidence 553 34589999999999999999999999998875
No 15
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.16 E-value=8.5e-09 Score=108.20 Aligned_cols=273 Identities=20% Similarity=0.185 Sum_probs=165.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHH
Q 017875 47 WPQALLLAFQHYIVMLGTTVLISSTLV--PLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLS 124 (364)
Q Consensus 47 ~~~~~~~GlQh~l~m~~~~i~vP~il~--~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~ 124 (364)
+..-+.+|+.-.+.. +|.-++ ...|+++ ..-+..+.+..++-+++|+.-=++.||..+.-.-...
T Consensus 14 l~~Di~aGltv~~~~------iP~~~ayA~laglpp-------~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 14 FKGDLMAGLTVGILL------IPQAMAYAILAGLSP-------IYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred hhhHHHHHHHHHHHH------HHHHHHHHHHcCCCc-------hhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 567888888755444 444443 2248887 5557788888888888887766778887532222222
Q ss_pred HHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhhhhhh------hccc
Q 017875 125 IINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMR------GFPL 198 (364)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGlsl~~~------~~~~ 198 (364)
+..+++..+..+. ...+.+....+++|++++++|++|+ +++.+++|.-|+.-++.-+|+..+-. +++.
T Consensus 81 ~v~~~~~~~~~~~-----~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~ 154 (563)
T TIGR00815 81 VIARVGLQYLFDC-----DAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISI 154 (563)
T ss_pred HHHHhcCCCCccc-----HHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2333321111000 2355667889999999999999986 89999999888777777777755422 1111
Q ss_pred -----------------ccc----ccchhHhHHHHHHHHHHHhhhhcccchhh--hhhhHHHHHHHHHHHHHHHHHhccC
Q 017875 199 -----------------LGN----CVEIGLPMLVLLVICQQYLKRLHPKAHFI--VERFALLFCIGVVWAFAAILTAAGA 255 (364)
Q Consensus 199 -----------------~g~----~~~v~l~~l~~~iil~~~~k~~~~~~~~~--~r~~avLigi~vG~~va~~lg~~g~ 255 (364)
+++ ||....+.+++++ +....|++.++.++. ......|+.+++++++.+.++..
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~-~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~-- 231 (563)
T TIGR00815 155 FNTRTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLLL-FLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHK-- 231 (563)
T ss_pred CCCCCChHHHHHHHHHHhhhccccchHHHHHHHHHHH-HHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccC--
Confidence 111 2322222222221 112334443221111 12346788888888877666311
Q ss_pred CCCCccccccccccCccccccCCCccccccccccccccchhh----HHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCc
Q 017875 256 YNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRAS----HVFGMIGAALVTSAESTGTFIAASRFAGATAPPA 331 (364)
Q Consensus 256 ~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~~~g~P~f~~~----~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~ 331 (364)
..+.. .+.+-|- .+| .+..|.+|+. .+...+.++++..+|++....+.++..++ +
T Consensus 232 ------------~~~~~-~~g~ip~-g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~----~ 290 (563)
T TIGR00815 232 ------------KQGVS-ILGHIPS-GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGY----K 290 (563)
T ss_pred ------------CCCeE-EEeecCC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C
Confidence 00110 0111110 112 2344556554 34445688999999999988888887664 3
Q ss_pred ccCCchhHHHhHHHHHhhhcCCCcchhhhcc
Q 017875 332 HVLSRSIGLQVLSLSSLLHFLLFIYFSIFSH 362 (364)
Q Consensus 332 ~~i~rgi~~dGl~t~~~~~fG~~p~~~~~~~ 362 (364)
.+.||-+.+.|++|+++++||++|.++.+|+
T Consensus 291 ~d~n~El~a~G~~N~~~~~fg~~p~~~s~sr 321 (563)
T TIGR00815 291 IDANQELVAQGIANIVGSFFSCYPATGSLSR 321 (563)
T ss_pred CCCcHHHHHhhHHHHHHHHhCccCCCCcchH
Confidence 4578999999999999999999999888774
No 16
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.00 E-value=6.5e-06 Score=78.52 Aligned_cols=176 Identities=20% Similarity=0.116 Sum_probs=102.2
Q ss_pred HhhhhHHHHhhhcCccchHHHHHHHhhhhhhhhcccc-c----------------------c--ccc---hhHhHHHHHH
Q 017875 163 GYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL-G----------------------N--CVE---IGLPMLVLLV 214 (364)
Q Consensus 163 g~tg~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~~~-g----------------------~--~~~---v~l~~l~~~i 214 (364)
|+.|+ +++.+++|.-|+.-++.-+|+.++...+..+ | + +|. ++..+++++.
T Consensus 2 Gllrl-G~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 80 (280)
T PF00916_consen 2 GLLRL-GFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFLL 80 (280)
T ss_pred ccccc-cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHHh
Confidence 44443 8899999987777778877775544333210 0 0 111 1112222222
Q ss_pred HHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCccccccccccC-ccccccCCCcccccccccccccc
Q 017875 215 ICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTD-RSYLLSSAPWIKVPYPFQWGTPI 293 (364)
Q Consensus 215 il~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~~~~~~~d-~~~~v~~a~w~~~P~~~~~g~P~ 293 (364)
+. ++.++.. +.+...+....++.++++.++++.++.-. . .++ ..+....-|.+.+|. . .
T Consensus 81 ~~-~~~~~~~-~~~~~~~~p~~li~vv~~~~~~~~~~~~~---~---------~v~~~~~i~~~lp~~~~p~-~-----~ 140 (280)
T PF00916_consen 81 II-RLLPKRL-PSRFWPPIPAPLIVVVLGTLLSWLFLLDK---Y---------GVAIVGEIPSGLPPPSLPS-F-----D 140 (280)
T ss_pred hh-hhhhhhc-cccccccccccceeeehhhhhhhhhhhcc---c---------cccccccccccCccccCcc-c-----c
Confidence 22 2222111 11223445577888888888887774210 0 111 111111233333342 0 3
Q ss_pred chh----hHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHhhhcCCCcchhhhccC
Q 017875 294 FRA----SHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSLLHFLLFIYFSIFSHM 363 (364)
Q Consensus 294 f~~----~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~~~fG~~p~~~~~~~~ 363 (364)
+++ ..+...+.+.++..+|++.+..+.++..++ +.+.||-+.+.|++|+++++||++|.++.||+.
T Consensus 141 ~~~~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~----~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs 210 (280)
T PF00916_consen 141 ISWSLILDLLPTALAIAIVGFIESLLIAKSIAKKTGY----RIDPNQELIALGLANIVSGLFGGMPGSGSFSRS 210 (280)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhhhhhcccccc----cCCcHHHHHHhhhccccchhhcccccccccccc
Confidence 333 344455688889999999888888776653 346889999999999999999999999988863
No 17
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=97.94 E-value=0.00053 Score=73.53 Aligned_cols=262 Identities=17% Similarity=0.146 Sum_probs=152.2
Q ss_pred HHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHH-H-hhcCCCCCCCcccc
Q 017875 65 TVLISSTLVPL--MGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSI-I-NDYNDGSFTSEHDR 140 (364)
Q Consensus 65 ~i~vP~il~~a--~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i-~-~~~~~~~~~~~~~~ 140 (364)
++.+|.-++-+ .|+++ ...+..+-++.++-.++|+-=.+-.||-. .+.-+..- . ......... ..
T Consensus 92 ~l~VPQ~iaYa~la~lpp-------iyGLYssf~~~~iY~~fGtsr~isiG~~a-v~sLmv~~~v~~~v~~~~~~---~~ 160 (665)
T KOG0236|consen 92 SLSVPQGLAYALLAGLPP-------IYGLYSSFFPPLIYAIFGTSRHVSIGPFA-VVSLMVGTVVSQVVLSEAPS---ND 160 (665)
T ss_pred eeecchHHHHHHHcCCCh-------HHHHHHHHHHHHHheeccCCCcccccHHH-HHHHHHHHHHHHHHhccCCC---cC
Confidence 44456555422 46666 55667777788888888888888888753 21211110 0 111000000 00
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhh----hhhh--hccccc--------------
Q 017875 141 FRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLG----LFMR--GFPLLG-------------- 200 (364)
Q Consensus 141 ~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGls----l~~~--~~~~~g-------------- 200 (364)
....++.+.-..+++|++++++|++++ +.+.+++|.-++.-++.-.++. -.+. +++++.
T Consensus 161 ~~~~i~va~~lt~l~Giiq~~mG~lrL-Gfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~ 239 (665)
T KOG0236|consen 161 IATTIQVATTLTFLTGIIQLILGLLRL-GFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFD 239 (665)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHH
Confidence 114678888889999999999999876 9999999964444344433332 2221 222110
Q ss_pred ---c------ccchhHhHHHHHHHHHH-HhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCccccccccccC
Q 017875 201 ---N------CVEIGLPMLVLLVICQQ-YLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTD 270 (364)
Q Consensus 201 ---~------~~~v~l~~l~~~iil~~-~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~~~~~~~d 270 (364)
+ .+.+++..+++. ++.+ +.++.+ ++-.+.....-++.+++++++++.+...+-+.. -.++
T Consensus 240 ~~~~~~~~~~~~~~~l~~l~~L-~~~k~~~~~~~-~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~--------~~~~ 309 (665)
T KOG0236|consen 240 LLANLPKTLATLVLSLIFLVVL-LLTKELNPKFK-KKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP--------IIVG 309 (665)
T ss_pred hhhcccccchhhhhHHHHHHHH-HHHHHhhhhhc-ccceeecccHHHHHHHHHHHHHHHhccccccCC--------eeec
Confidence 0 122333333222 3333 232222 222235566788999999999988863210000 0000
Q ss_pred ccccccCCCccccccccccccccch--hhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHh
Q 017875 271 RSYLLSSAPWIKVPYPFQWGTPIFR--ASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSL 348 (364)
Q Consensus 271 ~~~~v~~a~w~~~P~~~~~g~P~f~--~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~ 348 (364)
.-.+++.- ...|.++ ...+...+.+.++...|+++--.+.++..+++ -+-|+-+.+-|++++++
T Consensus 310 -----~i~~g~~~-----~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~----vd~nqELiAlG~~Ni~s 375 (665)
T KOG0236|consen 310 -----EIPRGFPP-----PSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYK----VDSNQELIALGISNILS 375 (665)
T ss_pred -----cCCCCCCC-----CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCe----eCCChHHHHHHHHHHhh
Confidence 01122222 2334333 34466678899999999988777777766553 33567899999999999
Q ss_pred hhcCCCcchhhhcc
Q 017875 349 LHFLLFIYFSIFSH 362 (364)
Q Consensus 349 ~~fG~~p~~~~~~~ 362 (364)
++|++.|.++.||+
T Consensus 376 Sff~~~p~tgs~sR 389 (665)
T KOG0236|consen 376 SFFGCYPTTGSFSR 389 (665)
T ss_pred hhhceEcccchhhH
Confidence 99999999999875
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=96.82 E-value=0.46 Score=52.64 Aligned_cols=280 Identities=14% Similarity=0.100 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcce-Eeccccc---hHHHHHHHHhhcCCCC
Q 017875 58 YIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPT-VMGPSAA---FTLPVLSIINDYNDGS 133 (364)
Q Consensus 58 ~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPi-v~gpsfa---~l~~~~~i~~~~~~~~ 133 (364)
++.||-+++.+.+..+.-++- ..+-..=++=++++++++.++.+++ ++.|+ +.|.+.- |.-.+..++..++.
T Consensus 375 ~ifiyFA~L~PaIaFG~ll~~-~T~g~~gv~E~Llstai~Giifslf-~GQPL~IlG~TGPilvF~~~ly~~c~~~~~-- 450 (900)
T TIGR00834 375 VIFIYFAALSPAITFGGLLGE-KTRNMMGVSELLISTAVQGVLFALL-AAQPLLVVGFSGPLLVFEEAFFSFCESNGL-- 450 (900)
T ss_pred HHHHHHHHhhHHhhHHHHHHH-hhCCcchHHHHHHHHHHHHHHHhhh-cCCceEEecCcccHHHHHHHHHHHHhhcCC--
Confidence 445555555444444432211 1111234567789999999999998 55665 4577652 22222222322210
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHhhhhhhhhcccc--------------
Q 017875 134 FTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL-------------- 199 (364)
Q Consensus 134 ~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~~~-------------- 199 (364)
.+ ++...=.-+.++++.++++.+.. ..+.|+++...-=.+=++|++.-+-.++..+
T Consensus 451 --------~y-l~~~~WigiW~~~~~~lla~~~~-s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~ 520 (900)
T TIGR00834 451 --------EY-LVGRVWIGLWLVLLVLLLVATEG-SFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYN 520 (900)
T ss_pred --------ch-HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 01 11112224566677777777654 5677777764443444444442333333110
Q ss_pred ----------------------------------ccccchhH---hHHHHHHHHHHHhhhhcc------cchhhhhhhHH
Q 017875 200 ----------------------------------GNCVEIGL---PMLVLLVICQQYLKRLHP------KAHFIVERFAL 236 (364)
Q Consensus 200 ----------------------------------g~~~~v~l---~~l~~~iil~~~~k~~~~------~~~~~~r~~av 236 (364)
......++ +..+.++.+..++|++.+ +.|+++.=|++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv 600 (900)
T TIGR00834 521 TLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGV 600 (900)
T ss_pred cccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhH
Confidence 00022233 333344455566666542 34667778899
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCccccccccccCcccc-ccCCCccccccccccccccch-hhHHHHHHHHHHHHhHhhh
Q 017875 237 LFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYL-LSSAPWIKVPYPFQWGTPIFR-ASHVFGMIGAALVTSAEST 314 (364)
Q Consensus 237 Ligi~vG~~va~~lg~~g~~~~~~~~~~~~~~~d~~~~-v~~a~w~~~P~~~~~g~P~f~-~~~il~~~~~~lv~~~esi 314 (364)
.|++++-+.+.+.++.+.. +...+ .-.|... -....|+--|.-.....|.+. +.++++.+.+++...+|+.
T Consensus 601 ~iaI~~~t~v~~~~~~v~~-~kl~V------p~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~n 673 (900)
T TIGR00834 601 PISILIMVLVDIFIGDTYT-QKLSV------PSGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQ 673 (900)
T ss_pred HHHHHHHHHHHHHhccCcc-cccCC------CCCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999887762210 10000 0011110 011356632311011113332 4566666677777777765
Q ss_pred hhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHhhhcCCCcchhh
Q 017875 315 GTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSLLHFLLFIYFSI 359 (364)
Q Consensus 315 G~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~~~fG~~p~~~~ 359 (364)
=+-.-+++-. ++-.+.....==+..-|+-+.++|+||-.+..+.
T Consensus 674 Its~iv~~~e-~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aa 717 (900)
T TIGR00834 674 ITTLIVSKKE-RKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAA 717 (900)
T ss_pred hHHHHhcCcc-ccCCCCcccchHHHHHHHHHHHHHhcCCCccccc
Confidence 4433333211 0101112233346778999999999998765543
No 19
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=96.65 E-value=0.1 Score=51.86 Aligned_cols=274 Identities=15% Similarity=0.136 Sum_probs=152.9
Q ss_pred cccccccCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch------hHHHHHHHHHHHHHHHHHHHHHhccCc
Q 017875 35 QQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHG------DKGRVIQSLLFMSGLNTLLQTLFGTRL 108 (364)
Q Consensus 35 ~~~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~------~~~~li~at~~~sGI~Tllq~~~G~rl 108 (364)
+|-.|+.||-.|.. +|.---.+|++.. ....++.+|++++ ....+|.+.+|+.=+++++.- .+++
T Consensus 53 rD~rfE~ED~vPAl----AgtIGkivMvsAv---~aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P--~anL 123 (492)
T PF11840_consen 53 RDYRFEWEDLVPAL----AGTIGKIVMVSAV---AAAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNP--RANL 123 (492)
T ss_pred cccccchHHhhHHH----HhhhhHHHHHHHH---HHHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCc--cccc
Confidence 44556777776632 3333344554432 2233445688765 234566666666555555443 4677
Q ss_pred ceEeccccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHHh
Q 017875 109 PTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVG 188 (364)
Q Consensus 109 Piv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lIG 188 (364)
+=-.||=--. .|. ....| +-+.++| +.-|++-++++.+|--+|+.++-..-|-|-.+..+|
T Consensus 124 AGthgPmIpL-Ip~---ivaaG-------------gHPLalg--ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG 184 (492)
T PF11840_consen 124 AGTHGPMIPL-IPL---IVAAG-------------GHPLALG--ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLG 184 (492)
T ss_pred cCCCCCcchh-hHH---HHHcC-------------CCcHHHH--HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeeh
Confidence 7666665322 222 22222 2345555 345788888999988899999999988887777766
Q ss_pred hhh----hhhhccccc--cccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCccc
Q 017875 189 LGL----FMRGFPLLG--NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQ 262 (364)
Q Consensus 189 lsl----~~~~~~~~g--~~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~ 262 (364)
+.= +..-..+.+ +...++++.+.+.+++..|+.++. ||| .+|-++-+++-++++.+|.
T Consensus 185 ~~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k~~---KrW---LaIPl~~~~a~~~a~~lGa---------- 248 (492)
T PF11840_consen 185 FVGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAKIE---KRW---LAIPLCSILAGVLAFALGA---------- 248 (492)
T ss_pred hhhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhc---cch---hhhhHHHHHHHHHHHHcCC----------
Confidence 621 222112222 234577888888888877877664 334 6788888888888888883
Q ss_pred cccccccCcccc-----ccCCCccccccccccccccc-hhhHHHHHHHHHH-HHhHhhhhhHHHHHhHhCCCCC--Cccc
Q 017875 263 TKLSCRTDRSYL-----LSSAPWIKVPYPFQWGTPIF-RASHVFGMIGAAL-VTSAESTGTFIAASRFAGATAP--PAHV 333 (364)
Q Consensus 263 ~~~~~~~d~~~~-----v~~a~w~~~P~~~~~g~P~f-~~~~il~~~~~~l-v~~~esiG~~~a~~~~~g~~~~--~~~~ 333 (364)
..||... ....=|+.=-+=.+.|+|.+ +.-+.+++.++.+ .=.-|.+|+-. .++.+-.++. ..-+
T Consensus 249 -----~f~f~t~pglp~lnP~YWWge~tGw~LglP~~~hfiav~PFAiLAVaMWSpDflghrv-Fqelnypk~~~kvlMn 322 (492)
T PF11840_consen 249 -----PFEFTTEPGLPNLNPMYWWGEETGWQLGLPTLEHFIAVLPFAILAVAMWSPDFLGHRV-FQELNYPKETKKVLMN 322 (492)
T ss_pred -----CceeecCCCCCCCCCcccccCCcccccCCCcHHHHHHhccHHHHHHHHhCchHHHHHH-HHHhcCchhhcceeec
Confidence 1232210 00011111111123455654 2334444433222 22346666543 4555422221 2234
Q ss_pred CCchhHHHhHHHHHhhhcCCCcchh
Q 017875 334 LSRSIGLQVLSLSSLLHFLLFIYFS 358 (364)
Q Consensus 334 i~rgi~~dGl~t~~~~~fG~~p~~~ 358 (364)
++.......+=.++++.+|+--.+|
T Consensus 323 vDDTm~~~siRQ~vGs~lGGgN~~S 347 (492)
T PF11840_consen 323 VDDTMTMCSIRQIVGSILGGGNIAS 347 (492)
T ss_pred ccchhHHHHHHHHHhhcccCCcccc
Confidence 6788899999999999998855544
No 20
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=96.49 E-value=1 Score=49.21 Aligned_cols=274 Identities=11% Similarity=0.105 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccc---hHHHHHHHHhhcCC
Q 017875 55 FQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAA---FTLPVLSIINDYND 131 (364)
Q Consensus 55 lQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa---~l~~~~~i~~~~~~ 131 (364)
+--++.++.+++.+.+..++-++-.. +-..-++-+++.+.++.++.+++|..=-+++|++.- |--.++-++.+++.
T Consensus 363 la~~lfiYfa~l~P~ItFG~ll~~~T-dg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~ 441 (876)
T KOG1172|consen 363 LAATLFIYFACLLPAITFGGLLGEAT-DGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGL 441 (876)
T ss_pred chHHHHHHHHhhhhHhhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCC
Confidence 45667777777666666554333222 334556778999999999999996655567777752 22222223333221
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCc---cchHHHHHHHhhhhhhhhcc-----------
Q 017875 132 GSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSP---IVIVPFVCVVGLGLFMRGFP----------- 197 (364)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP---~V~G~~i~lIGlsl~~~~~~----------- 197 (364)
.+ ++-..=--+.+.++.++++.+.. ..+.++|+. ..-|..|++| .+..++.
T Consensus 442 ----------dy-l~~r~wVglW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~i---Fi~eai~kl~~i~~~~~~ 506 (876)
T KOG1172|consen 442 ----------DY-LAFRAWVGLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLI---FIYEAIKKLIKIFKGLPI 506 (876)
T ss_pred ----------ch-hhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHhhcCcc
Confidence 01 11112223556667777776654 566666664 5666666666 3333322
Q ss_pred cc--------------c--------------cccchhHhHHHHHHHHHHHhhhhcc------cchhhhhhhHHHHHHHHH
Q 017875 198 LL--------------G--------------NCVEIGLPMLVLLVICQQYLKRLHP------KAHFIVERFALLFCIGVV 243 (364)
Q Consensus 198 ~~--------------g--------------~~~~v~l~~l~~~iil~~~~k~~~~------~~~~~~r~~avLigi~vG 243 (364)
+. + ++..++++..+.++.+..++|++.+ +.|.++.=|++.+++++-
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~ 586 (876)
T KOG1172|consen 507 EFDSKPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVF 586 (876)
T ss_pred cccccCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHH
Confidence 00 0 1223344444455666777887754 345677778999999999
Q ss_pred HHHHHHHHhccCCCCCccccccccccCccccccC-CCccccccccccccccch-hhHHHHHHHHHHHHhHhhhhhHHHHH
Q 017875 244 WAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSS-APWIKVPYPFQWGTPIFR-ASHVFGMIGAALVTSAESTGTFIAAS 321 (364)
Q Consensus 244 ~~va~~lg~~g~~~~~~~~~~~~~~~d~~~~v~~-a~w~~~P~~~~~g~P~f~-~~~il~~~~~~lv~~~esiG~~~a~~ 321 (364)
..+.+..+.. ++++- .-+..++..... ..|+-.|. ...|.+. ..+++..+.+++.-.+|+-=+ +
T Consensus 587 s~i~~~~~~~--~~~kl-----~vp~~~~~t~~~~rgw~v~~~---~~~P~~~~~~A~ipalll~iLiFmDqqIt----s 652 (876)
T KOG1172|consen 587 SLIDYFGGSV--ETPKL-----PVPSVFPPTWPFDRGWFVPPF---GKNPWWYVFAALIPALLLTILIFMDQQIT----A 652 (876)
T ss_pred HHHHhhcccc--CCCcc-----ccCcCCCCCCcccCCeeeCCC---CCCCHHHHHHHHHHHHHHHHHHHhcchHH----H
Confidence 9988877632 11100 001111111111 35655441 1122222 344555556666666665332 2
Q ss_pred hHhCCCCC---CcccCCchhHHHhHHHHHhhhcCCCcchh
Q 017875 322 RFAGATAP---PAHVLSRSIGLQVLSLSSLLHFLLFIYFS 358 (364)
Q Consensus 322 ~~~g~~~~---~~~~i~rgi~~dGl~t~~~~~fG~~p~~~ 358 (364)
.+.++++. +.....-=+..-|+-+.++|+||-.+..+
T Consensus 653 ~iv~rke~kLKKgsgyH~DLlllgil~~icsllGLPw~~~ 692 (876)
T KOG1172|consen 653 VIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNA 692 (876)
T ss_pred HHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCCCcccc
Confidence 23322111 11223334788899999999999876543
No 21
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=88.31 E-value=10 Score=38.39 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=85.7
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHhhcCCCCCCCccccccccHHHHH
Q 017875 70 STLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQ 149 (364)
Q Consensus 70 ~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 149 (364)
+-..++.|-+.. +...+..+|++|++-+.+|. .++..+ ....+++.. ++. | ++ ...=.
T Consensus 244 iavl~aaGy~~p-----~~~~~~~tGl~sll~ApfGg-~~~nla------aitaAic~G-----~~a-h---~d-~~rR~ 301 (395)
T TIGR00843 244 IAALKAAGYNAP-----AKPIIAAAGLAALFAAFAGG-ISIGIA------AITAAICMG-----KDA-H---ED-KDKRW 301 (395)
T ss_pred HHHHHHcCCCCC-----chHHHHHHHHHHHHHhccCC-chhhhh------HHhHHHhcC-----ccc-c---cC-cCccc
Confidence 333455555432 47778899999999998854 332211 111223321 111 0 11 22336
Q ss_pred HHHHHHHHHHHHHHhh-hhHHHHhhhcCccchHHHHHHHhhhhhhhhcccc----c--cccchhHhHHHHHHHHHHHhhh
Q 017875 150 GSLIVSSFINIVLGYS-GAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL----G--NCVEIGLPMLVLLVICQQYLKR 222 (364)
Q Consensus 150 Ga~ivsGli~illg~t-g~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~~~----g--~~~~v~l~~l~~~iil~~~~k~ 222 (364)
++.+++|++++++|++ +.+..+...+|+..+.. +-|+.|.+...+++ . ++..-++++++++. .+
T Consensus 302 ~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~---laGlAll~~~~~~l~~a~~~~~~r~~a~~tflvta------Sg 372 (395)
T TIGR00843 302 IAAAAAGIFYLLAGLFAGAITALFAALPKELIAA---LAGLALLGAIAGNIKIALHEDQERDAALIAFLATA------SG 372 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH------hc
Confidence 7889999999999998 77788999999876553 45666665544332 1 23334444444332 22
Q ss_pred hcccchhhhhhhHHHHHHHHHHHHHHH
Q 017875 223 LHPKAHFIVERFALLFCIGVVWAFAAI 249 (364)
Q Consensus 223 ~~~~~~~~~r~~avLigi~vG~~va~~ 249 (364)
+ .++...+-++|+++|.+++..
T Consensus 373 ~-----~~~gigaafWgl~~G~~~~~~ 394 (395)
T TIGR00843 373 L-----HFLGIGSAFWGLCAGGLAYFI 394 (395)
T ss_pred C-----CcccccHHHHHHHHHHHHHHh
Confidence 2 246679999999999877643
No 22
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=66.03 E-value=1.5e+02 Score=29.87 Aligned_cols=166 Identities=16% Similarity=0.200 Sum_probs=89.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHH
Q 017875 47 WPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSII 126 (364)
Q Consensus 47 ~~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~ 126 (364)
+...+-.++=-++...++--..-+.+-++.|.++. +...+..+|+++++-..+|. .++ ..=....+++
T Consensus 205 ~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p-----~~~~~~~tGl~s~l~ApfGg-~~~------nlAaitaAIc 272 (378)
T PF03594_consen 205 WSALVSLALPLFIVTMASQNLPGIAVLRAAGYQPP-----VNPLITVTGLASLLAAPFGG-HAV------NLAAITAAIC 272 (378)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCC-----chHHHHHHHHHHHHHhhhch-hhh------HHHHHHHHHH
Confidence 34444445444433333333344555566676543 35667789999999998853 111 1112333444
Q ss_pred hhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhh-hHHHHhhhcCccchHHHHHHHhhhhhhhhcccc----cc
Q 017875 127 NDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSG-AWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL----GN 201 (364)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg-~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~~~----g~ 201 (364)
..-+. ..++ +.=+-+-+.+|++++++|.+. ..-.+...+|+..+. .+-|+.|.+.-.+.+ .+
T Consensus 273 ~g~ea--h~dp--------~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~---~lAGLALlg~l~~sl~~A~~~ 339 (378)
T PF03594_consen 273 AGPEA--HPDP--------SRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIA---ALAGLALLGTLGGSLQTAFSD 339 (378)
T ss_pred cCCcc--CCCc--------ccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHHHHHHhcC
Confidence 32111 0111 111345578899999999863 234466777775544 345666665544332 22
Q ss_pred --ccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHH
Q 017875 202 --CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAA 248 (364)
Q Consensus 202 --~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~ 248 (364)
+..-+++++++. ..++ .++...+-++|+++|++++.
T Consensus 340 ~~~r~aAlvtFlvt------aSGi-----sl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 340 EKYREAALVTFLVT------ASGI-----SLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred cchhHHHHHHHHHH------HcCC-----CcccccHHHHHHHHHHHHHh
Confidence 233334443332 2232 35667999999999998763
No 23
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=62.09 E-value=1.3e+02 Score=31.10 Aligned_cols=163 Identities=12% Similarity=-0.056 Sum_probs=77.9
Q ss_pred hhHHHHhhhcCccchHHHHHHHhhhhhhhhcc--c------------cccccchh---HhHHHHHHHHHHHhhhhcccch
Q 017875 166 GAWGNLARFFSPIVIVPFVCVVGLGLFMRGFP--L------------LGNCVEIG---LPMLVLLVICQQYLKRLHPKAH 228 (364)
Q Consensus 166 g~~~~l~~~fPP~V~G~~i~lIGlsl~~~~~~--~------------~g~~~~v~---l~~l~~~iil~~~~k~~~~~~~ 228 (364)
...+++++.+|-.+....++++.....+.-.+ + +.++..++ ++-.++++++....|+.
T Consensus 179 ~~~~~v~~~~~~~~~a~~i~~v~~~i~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~LlP~ilvIiLal~~~~v----- 253 (454)
T TIGR00931 179 DLFDHIRHLLYTTVPSFVITAILFLVIGRSYATSNTQPDKVQAMLTALDSQFTLSVLTLIPPLLVVILAMRKKPT----- 253 (454)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHhHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCCh-----
Confidence 56788888888777666666665544442111 1 11222222 22233444443333322
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhccCCCCCccccccccccCcccccc-CCCccccccccc-cccccchhhHHHHHHHHH
Q 017875 229 FIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLS-SAPWIKVPYPFQ-WGTPIFRASHVFGMIGAA 306 (364)
Q Consensus 229 ~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~~~~~~~d~~~~v~-~a~w~~~P~~~~-~g~P~f~~~~il~~~~~~ 306 (364)
..++.+|+++|.+++++.+... +.|.- ....+. .. +..--.+-...+ -|.=..-+...+.++...
T Consensus 254 ----i~aL~igi~~g~ii~~~~qg~s--~~~~~------~~~~~G-~~~~t~~~~v~~ll~~GGi~sM~~~i~lii~~~~ 320 (454)
T TIGR00931 254 ----IPVLVVGALTGIITAAFVQGAD--VVRWI------TIAQNG-FSMETGNEVLDGLLNRGGLQSMMWSLSLVMIALT 320 (454)
T ss_pred ----HHHHHHHHHHHHHHHHHhCCCC--HHHHH------HHHHcC-ccccccchHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3688889998888887665211 00000 000000 00 000000000000 011011245666777888
Q ss_pred HHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHhh
Q 017875 307 LVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSLL 349 (364)
Q Consensus 307 lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~~ 349 (364)
+..+.|..|...++.+...+|-.+ -+|......+.+.+..
T Consensus 321 lggil~~~G~l~~l~~~l~~~i~s---~~~~~l~t~~~~~i~~ 360 (454)
T TIGR00931 321 FGGVLQRIGVLDVILQSANKKIIS---TWTFDCSTSTSSIGVN 360 (454)
T ss_pred HHHHHHHcCcHHHHHHHHHHHcCC---CcceehHHHHHHHHHH
Confidence 888999999999987766432222 2234444444444433
No 24
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=59.06 E-value=12 Score=39.10 Aligned_cols=134 Identities=8% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhcc------cchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCccccccccccCcccccc-CCCccccc
Q 017875 212 LLVICQQYLKRLHP------KAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLS-SAPWIKVP 284 (364)
Q Consensus 212 ~~iil~~~~k~~~~------~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~~~~~~~~~~~d~~~~v~-~a~w~~~P 284 (364)
.++.+..++|++.+ +.|+++.=+++.|++++-..+...++ ... ++-.. ..+++.... ...|+--|
T Consensus 255 gTf~la~~L~~fk~S~yf~~~vR~~isDf~v~iaI~~~~~~~~~~~-~~~-~kL~v------p~~f~pt~~~~r~W~v~p 326 (510)
T PF00955_consen 255 GTFWLAYTLRQFKNSPYFPRWVREIISDFGVPIAILIMTLVDYLFG-VDT-PKLNV------PSSFKPTSPGKRGWFVNP 326 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCcCccHHHHHhHHhhHHHHHHHHHHHHHHHhc-ccc-cccCC------CCCCCCCCCCCCCeecCc
Confidence 34455556665542 34667778899999999888877765 211 11000 001221011 13565434
Q ss_pred cccccccccch-hhHHHHHHHHHHHHhHhhhhhHHHHHh-HhCCCCCCcccCCchhHHHhHHHHHhhhcCCCcchh
Q 017875 285 YPFQWGTPIFR-ASHVFGMIGAALVTSAESTGTFIAASR-FAGATAPPAHVLSRSIGLQVLSLSSLLHFLLFIYFS 358 (364)
Q Consensus 285 ~~~~~g~P~f~-~~~il~~~~~~lv~~~esiG~~~a~~~-~~g~~~~~~~~i~rgi~~dGl~t~~~~~fG~~p~~~ 358 (364)
. ...|.+. ..+++..+.+++...+|+.=+-.-+++ ..+.|++ ....==+..-|+-+.+++++|-....+
T Consensus 327 ~---~~~p~w~~~aA~~palll~iL~F~DqnIts~ivn~~e~kLkKg--~gyH~DL~llgi~~~v~sllGLPw~~a 397 (510)
T PF00955_consen 327 F---GSLPWWAIFAAIIPALLLTILFFMDQNITSLIVNRPENKLKKG--SGYHLDLFLLGIITLVCSLLGLPWMNA 397 (510)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred c---cCCCHHHHHHHHHHHHHHHHHHHHHHhHhHHHhCChhhccCCC--CcccHHHHHHHHHHHHHHHcCCCCccc
Confidence 1 1223333 344444455555556664332222221 1111121 112223577789999999999655443
No 25
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=53.63 E-value=1.6e+02 Score=31.23 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 017875 91 LFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGN 170 (364)
Q Consensus 91 ~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~ 170 (364)
+++-|++-+.-+++ ..+|.--+.+ -.. +..+.| -+.=+.+++-+.++.+++- +...
T Consensus 286 LiaqGiaNi~sglf-gg~p~~g~~s----rS~--~nv~sG--------------arT~lsgi~~a~~lll~l~---~~~~ 341 (554)
T COG0659 286 LIAQGIANIASGLF-GGIPATGSIS----RSA--INIKSG--------------ARTRLSGIIHAALLLLLLL---FLAP 341 (554)
T ss_pred HHHhhHHHHHHHHh-CCccccchhH----HHH--HHHHhC--------------CcChHHHHHHHHHHHHHHH---HHHH
Confidence 67789999999987 6688643333 111 111211 1122233333333333222 3578
Q ss_pred HhhhcCccchHHHHHHHhhhhhhhhc-cc-cccccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHH
Q 017875 171 LARFFSPIVIVPFVCVVGLGLFMRGF-PL-LGNCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAA 248 (364)
Q Consensus 171 l~~~fPP~V~G~~i~lIGlsl~~~~~-~~-~g~~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~ 248 (364)
+..++|-.+.+.+++++|..++.... .+ .-.....-+++++++++...+ ..+..|+.+|.+++.
T Consensus 342 ~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v~~~t~~~tv~--------------~~l~~GV~vGi~ls~ 407 (554)
T COG0659 342 LVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVLLTTALLTVF--------------FDLVIGVVVGILLAC 407 (554)
T ss_pred HHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 89999999999999999998876432 22 110111112333333333222 467777777777776
Q ss_pred HHH
Q 017875 249 ILT 251 (364)
Q Consensus 249 ~lg 251 (364)
++-
T Consensus 408 ~~~ 410 (554)
T COG0659 408 LLF 410 (554)
T ss_pred HHH
Confidence 654
No 26
>PRK11660 putative transporter; Provisional
Probab=49.97 E-value=3.4e+02 Score=28.73 Aligned_cols=83 Identities=11% Similarity=0.148 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhh
Q 017875 88 QSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGA 167 (364)
Q Consensus 88 ~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~ 167 (364)
..-+++-|++.++=+++ ..+|..-..+- . ++..+.| -..-+.+++.+.++.+.+- +
T Consensus 314 n~EL~a~G~aNi~~~~f-gg~p~~~s~sr----S--a~n~~aG--------------arT~la~iv~a~~~ll~ll---~ 369 (568)
T PRK11660 314 NSELVGQGLGNIVAPFF-GGITATAAIAR----S--AANVRAG--------------ATSPISAVIHALLVLLALL---V 369 (568)
T ss_pred cHHHHHHhHHHHHHHHh-CcccccchHHH----H--HHHHhcC--------------CCcHHHHHHHHHHHHHHHH---H
Confidence 55678899999999988 55775332221 1 2222221 1122333333333333332 2
Q ss_pred HHHHhhhcCccchHHHHHHHhhhhhhh
Q 017875 168 WGNLARFFSPIVIVPFVCVVGLGLFMR 194 (364)
Q Consensus 168 ~~~l~~~fPP~V~G~~i~lIGlsl~~~ 194 (364)
...+.+++|..+.+.++..+|+.+...
T Consensus 370 l~~ll~~iP~~vLa~ili~~~~~m~~~ 396 (568)
T PRK11660 370 LAPLLSYLPLSAMAALLLMVAWNMSEA 396 (568)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhhhH
Confidence 467899999999999999999988754
No 27
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=40.23 E-value=53 Score=26.44 Aligned_cols=35 Identities=11% Similarity=-0.019 Sum_probs=25.1
Q ss_pred HHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHH
Q 017875 216 CQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAIL 250 (364)
Q Consensus 216 l~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~l 250 (364)
+.+..|+..+-.+.|+...++++|+++|.+.++..
T Consensus 21 lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~ 55 (93)
T PF06946_consen 21 LVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLT 55 (93)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcC
Confidence 34555665444577888999999999998876544
No 28
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=39.94 E-value=3.2e+02 Score=27.29 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=55.1
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHhhcCCCCCCCccccccccHHHHH
Q 017875 70 STLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQ 149 (364)
Q Consensus 70 ~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 149 (364)
..+++..|.+.++ ..-+.+++..-|++|++-+++|. .|..--.. .. +..+..+. .+ .
T Consensus 253 ~a~~~~~~~~~~~-~~~~~r~l~~dg~~~~l~gl~G~-~~~t~~~e-----n~-g~i~~t~v-----------~S----r 309 (389)
T PF00860_consen 253 VAVARIAGKDDPR-PPRIRRGLLADGLGTILAGLFGT-SPTTTYSE-----NA-GGIAATGV-----------AS----R 309 (389)
T ss_dssp HHHHHHHTS-TCC-CCCHHHHHHHHHHHHHHHHHHT----EEE-HH-----HH-HHHHHHTB-----------------H
T ss_pred HHHHHHhCCCCcc-chhhcccceeeeeeeeechhhcC-CCCccccc-----cc-hhhhhhcc-----------cc----c
Confidence 3344445555443 44478999999999999999987 66532111 11 11111110 01 1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhcCccc-hHHHHHHHhh
Q 017875 150 GSLIVSSFINIVLGYSGAWGNLARFFSPIV-IVPFVCVVGL 189 (364)
Q Consensus 150 Ga~ivsGli~illg~tg~~~~l~~~fPP~V-~G~~i~lIGl 189 (364)
=..+.++++.+++++...+..+...+|..| .|+.+.+.|.
T Consensus 310 ~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~ 350 (389)
T PF00860_consen 310 RVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGM 350 (389)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 245677788888888888899999999877 5666666654
No 29
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=39.93 E-value=4.8e+02 Score=27.56 Aligned_cols=83 Identities=11% Similarity=0.191 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhh
Q 017875 88 QSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGA 167 (364)
Q Consensus 88 ~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~ 167 (364)
..-+++.|++.++=+++ ..+|...+.|- .++..+.|.. ..+.. ++++++.+++.+ +
T Consensus 294 n~El~a~G~~N~~~~~f-g~~p~~~s~sr------s~~~~~~G~~----------t~~a~-----i~~~~~~l~~~l--~ 349 (563)
T TIGR00815 294 NQELVAQGIANIVGSFF-SCYPATGSLSR------TAVNAKAGCR----------TQLSG-----VVTAIVVLLVLL--V 349 (563)
T ss_pred cHHHHHhhHHHHHHHHh-CccCCCCcchH------HHHHHhcCCc----------chHHH-----HHHHHHHHHHHH--H
Confidence 34478899999999987 55777555442 1122222110 12322 444444443333 2
Q ss_pred HHHHhhhcCccchHHHHHHHhhhhhhh
Q 017875 168 WGNLARFFSPIVIVPFVCVVGLGLFMR 194 (364)
Q Consensus 168 ~~~l~~~fPP~V~G~~i~lIGlsl~~~ 194 (364)
...+.+++|-.+.+.++..++..+...
T Consensus 350 ~~~~l~~iP~~~la~ili~~~~~l~~~ 376 (563)
T TIGR00815 350 LTPLFYYIPQAALAAIIISAVRGLIDY 376 (563)
T ss_pred HHHHHHhChHHHHHHHHHHHHhcccCH
Confidence 466889999999999999999987644
No 30
>COG2985 Predicted permease [General function prediction only]
Probab=37.90 E-value=33 Score=35.69 Aligned_cols=39 Identities=36% Similarity=0.680 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcCccc--------hHHHHHHHhhh
Q 017875 149 QGSLIVSSFINIVLGYSGAWGNLARFFSPIV--------IVPFVCVVGLG 190 (364)
Q Consensus 149 ~Ga~ivsGli~illg~tg~~~~l~~~fPP~V--------~G~~i~lIGls 190 (364)
.|+-++.+++ +|+.|-.+++-.++||-. +..|++.+|++
T Consensus 398 aGGpLivaLi---LG~ig~iGpl~w~mP~~An~~lrelGl~lFLA~VGl~ 444 (544)
T COG2985 398 AGGPLIVALI---LGFIGAIGPLTWFMPPGALLALRELGLALFLAGVGLS 444 (544)
T ss_pred cccHHHHHHH---HHHhcccCceEEEcChhHHHHHHHHHHHHHHHhhccc
Confidence 3555666766 455555688888999843 45555555553
No 31
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=37.23 E-value=94 Score=28.87 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=42.7
Q ss_pred hHHHHhh-hcCccchHHHHHHHhhhhhhhhcccc--cc---ccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHH
Q 017875 167 AWGNLAR-FFSPIVIVPFVCVVGLGLFMRGFPLL--GN---CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCI 240 (364)
Q Consensus 167 ~~~~l~~-~fPP~V~G~~i~lIGlsl~~~~~~~~--g~---~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi 240 (364)
+.+|.++ ++.|+.+...+...-+.+.+.--++. +. ++.++-.++.+.+=+.+..+.++++ ..+++.++
T Consensus 11 l~~r~~~~~l~P~l~a~~~ii~~L~~~~i~y~~Y~~gg~~l~~lLgPatVALAvPLY~~~~~l~~~------~~~il~~~ 84 (215)
T PF04172_consen 11 LYKRFKSPFLNPLLIAIVLIIAFLLLTGIPYEDYMQGGDILSFLLGPATVALAVPLYRQRRLLKKN------WIPILVGV 84 (215)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 4566655 56788888777666665555433322 12 3455556666666554443333211 23566666
Q ss_pred HHHHHHHHHH
Q 017875 241 GVVWAFAAIL 250 (364)
Q Consensus 241 ~vG~~va~~l 250 (364)
.+|.+++...
T Consensus 85 ~~g~~~~~~~ 94 (215)
T PF04172_consen 85 LVGSLVSIFS 94 (215)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 32
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=36.19 E-value=1.2e+02 Score=27.82 Aligned_cols=75 Identities=11% Similarity=0.330 Sum_probs=40.4
Q ss_pred cceEeccccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHH-HHHHHhhhhHHHHhhhcCc-------cc
Q 017875 108 LPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFI-NIVLGYSGAWGNLARFFSP-------IV 179 (364)
Q Consensus 108 lPiv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli-~illg~tg~~~~l~~~fPP-------~V 179 (364)
.|+..||+- +...+...++.+ .+ ...-.+.+++++..++ ++++- .-+++.|.+.+ -+
T Consensus 118 ~PllaGPG~--It~vi~~~~~~~---------~~-~~~~~~~~ai~~~~~~~~l~l~---~a~~i~~~lG~~g~~vi~Ri 182 (203)
T PF01914_consen 118 IPLLAGPGT--ITTVIVLSAEAG---------SL-QSLLIVLIAILLVALITYLILR---FADKIMRRLGKTGLQVITRI 182 (203)
T ss_pred hhhccChHH--HHHHHHHHhccC---------cH-HHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHhhhHHHHHHHHH
Confidence 367777773 444444443321 00 1233444554444333 33333 34788888887 34
Q ss_pred hHHHHHHHhhhhhhhhcc
Q 017875 180 IVPFVCVVGLGLFMRGFP 197 (364)
Q Consensus 180 ~G~~i~lIGlsl~~~~~~ 197 (364)
.|.+++.||.+.+-.|+.
T Consensus 183 ~Glil~aiavq~i~~Gl~ 200 (203)
T PF01914_consen 183 MGLILAAIAVQMILSGLR 200 (203)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776655543
No 33
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=33.28 E-value=1.5e+02 Score=26.50 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=16.0
Q ss_pred CccccccCCCccccccccccccccchhhHHHHHH
Q 017875 270 DRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMI 303 (364)
Q Consensus 270 d~~~~v~~a~w~~~P~~~~~g~P~f~~~~il~~~ 303 (364)
|+.-.+.-.|.+++|. |-...|++..+.+.+
T Consensus 78 dyP~~iGGKP~~S~Pa---fipi~FEltVL~aa~ 108 (173)
T PF11821_consen 78 DYPLNIGGKPLFSWPA---FIPITFELTVLFAAL 108 (173)
T ss_pred ccceecCCCCCCCCcc---cchHHHHHHHHHHHH
Confidence 4432245567777773 322356665555543
No 34
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=32.64 E-value=24 Score=18.68 Aligned_cols=7 Identities=71% Similarity=1.493 Sum_probs=4.1
Q ss_pred CCCCCCC
Q 017875 12 PPQAAPP 18 (364)
Q Consensus 12 ~~~~~~~ 18 (364)
|||.|||
T Consensus 8 pPQ~~Pp 14 (15)
T PF02162_consen 8 PPQGYPP 14 (15)
T ss_pred CCCCCCC
Confidence 4666655
No 35
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=31.12 E-value=48 Score=36.46 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=10.2
Q ss_pred ccccccccCC---CCChhH
Q 017875 34 LQQLQYCIHS---NPPWPQ 49 (364)
Q Consensus 34 ~~~~~y~~~d---~pp~~~ 49 (364)
++++.|++|- |.+|.+
T Consensus 615 kpKK~~k~e~~Mrr~nW~k 633 (1102)
T KOG1924|consen 615 KPKKVYKPEVPMRRFNWSK 633 (1102)
T ss_pred CccccCCCCCccccCCccc
Confidence 5667777764 456764
No 36
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=30.92 E-value=5.5e+02 Score=25.64 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHh-----------hhhHHHHhhhcCccc-----hHHHHHHHhhhhhhhhcc------ccccccchhHh
Q 017875 151 SLIVSSFINIVLGY-----------SGAWGNLARFFSPIV-----IVPFVCVVGLGLFMRGFP------LLGNCVEIGLP 208 (364)
Q Consensus 151 a~ivsGli~illg~-----------tg~~~~l~~~fPP~V-----~G~~i~lIGlsl~~~~~~------~~g~~~~v~l~ 208 (364)
+++++++++.+.|. +-..+.++++++|.. ...+..+++......+-. .++-+.+++.+
T Consensus 41 gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGal 120 (349)
T COG3949 41 GIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGAL 120 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHH
Confidence 35566666555554 122356777777744 222333333322211111 12324456755
Q ss_pred HHHHHHHHHHHhhhh
Q 017875 209 MLVLLVICQQYLKRL 223 (364)
Q Consensus 209 ~l~~~iil~~~~k~~ 223 (364)
.++.++....++||+
T Consensus 121 i~i~~v~i~lfl~~v 135 (349)
T COG3949 121 IIILLVLILLFLGRV 135 (349)
T ss_pred HHHHHHHHHHHHhcc
Confidence 555555555567655
No 37
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=29.59 E-value=6.8e+02 Score=26.25 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=73.1
Q ss_pred CCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhccCcce---EeccccchH
Q 017875 43 SNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPT---VMGPSAAFT 119 (364)
Q Consensus 43 d~pp~~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~G~rlPi---v~gpsfa~l 119 (364)
++|.....+..+.-..+...+.....|++..+.+|.++.....+..+.-+.+-+++++...+..|+.. +..... ..
T Consensus 216 ~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~-~~ 294 (524)
T PF05977_consen 216 SSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASL-LF 294 (524)
T ss_pred cchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHH-HH
Confidence 34555555555544444433444456888888888888877777777666677777777665555432 211111 11
Q ss_pred HHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchHHHHHHH
Q 017875 120 LPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVV 187 (364)
Q Consensus 120 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G~~i~lI 187 (364)
........ .. .....+..+.++.|......-. .....+++..|+.+.|=+..+.
T Consensus 295 a~~~~~la-l~------------~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~si~ 348 (524)
T PF05977_consen 295 ALALLLLA-LS------------PSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFSIY 348 (524)
T ss_pred HHHHHHHh-cc------------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHHHH
Confidence 11111111 10 1234455667777766655433 2446688889988877665543
No 38
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=28.74 E-value=5.6e+02 Score=25.13 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHH
Q 017875 293 IFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSL 345 (364)
Q Consensus 293 ~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t 345 (364)
+..|..+++-+...+-..+..-|.-..+++..+.--|+.+ .--++.+-.+|-
T Consensus 159 ~vG~a~iLPQlLAaLG~vF~~AGVG~vIa~lv~~viP~g~-~~~~ViaYclGM 210 (308)
T PF06166_consen 159 QVGWAAILPQLLAALGAVFTAAGVGDVIASLVSSVIPEGN-RFIGVIAYCLGM 210 (308)
T ss_pred HhhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHhhcCCCC-eehhHHHHHHHH
Confidence 3457888888888888888888888888887765222222 334555555544
No 39
>COG3817 Predicted membrane protein [Function unknown]
Probab=28.52 E-value=4.3e+02 Score=25.48 Aligned_cols=127 Identities=20% Similarity=0.072 Sum_probs=65.6
Q ss_pred hhcCccchHHHHHHHhhhh----hhhhcc-c------------cccccch-hHhHHHHHHHHHHHhhhhcccchhhhhhh
Q 017875 173 RFFSPIVIVPFVCVVGLGL----FMRGFP-L------------LGNCVEI-GLPMLVLLVICQQYLKRLHPKAHFIVERF 234 (364)
Q Consensus 173 ~~fPP~V~G~~i~lIGlsl----~~~~~~-~------------~g~~~~v-~l~~l~~~iil~~~~k~~~~~~~~~~r~~ 234 (364)
.+.|+.++|..+.++.+-- ...+-. . .|+...+ ++..-++.++.++.++.+++...+.--..
T Consensus 50 ~~lp~~viG~ivillAliagf~~v~~G~~~~~~~e~re~~A~rlgnrlfiPal~ip~~tlig~~lf~~~s~~~pknatl~ 129 (313)
T COG3817 50 DRLPNIVIGLIVILLALIAGFGQVKIGALPELSPEEREKSANRLGNRLFIPALLIPVLTLIGSLLFPDLSFFDPKNATLM 129 (313)
T ss_pred ccccchhHhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHHHhcCEeehHHHHHHHHHHHHHHHhccccccCCcchhHH
Confidence 6889999999888775521 111110 0 1121111 12222344555666676654111112345
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCccccccccccCccccccCCCccccccccccccccchhhHHHHHHHHHHHHhHhhh
Q 017875 235 ALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAEST 314 (364)
Q Consensus 235 avLigi~vG~~va~~lg~~g~~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~~~g~P~f~~~~il~~~~~~lv~~~esi 314 (364)
++-+|.+++.+++-.+..- .|+ +.++++. +.. -+.+|..+++=....+-..+...
T Consensus 130 al~i~~i~a~vla~~mt~~--~p~--------------~~~~E~~-----rl~----d~v~wa~iLPQ~LaaLG~vFa~a 184 (313)
T COG3817 130 ALGIAAIVATVLACVMTKQ--TPK--------------AAVQEAR-----RLM----DQVSWAAILPQMLAALGAVFASA 184 (313)
T ss_pred HHHHHHHHHHHHHHHHhcc--Chh--------------hHHHHHH-----HHH----HHhhHHHHHHHHHHHHHHHHHhc
Confidence 6777777777776666421 010 0111110 111 15678888887777777777777
Q ss_pred hhHHHHHhHh
Q 017875 315 GTFIAASRFA 324 (364)
Q Consensus 315 G~~~a~~~~~ 324 (364)
|...++++..
T Consensus 185 GvG~~ia~L~ 194 (313)
T COG3817 185 GVGDVIAHLI 194 (313)
T ss_pred chhHHHHHHH
Confidence 7767776665
No 40
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=28.33 E-value=6.4e+02 Score=25.54 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=26.0
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHHHHHH----hccCcceE
Q 017875 73 VPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTV 111 (364)
Q Consensus 73 ~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~----~G~rlPiv 111 (364)
.+.+|++..|........++...++.++-++ +|.|..+.
T Consensus 63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~ 105 (476)
T PLN00028 63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSA 105 (476)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 4557998888776655555666677777765 56665443
No 41
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=27.89 E-value=78 Score=29.43 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=29.9
Q ss_pred hhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHhhhcC
Q 017875 314 TGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSLLHFL 352 (364)
Q Consensus 314 iG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~~~fG 352 (364)
+.+|+--+.+.|..||+-+|+.|++++.-++|++++.+.
T Consensus 195 laSYNIgGTIEGfHDPKFKr~p~~vias~vaS~~~gii~ 233 (240)
T PRK00968 195 LASYNIGGTIEGFHDPKFKRWPRAVIASFVASLVCGIVA 233 (240)
T ss_pred HHhhccCceeecCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 345554445556678888999999999999999998753
No 42
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=27.56 E-value=3.3e+02 Score=27.30 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhh
Q 017875 86 VIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYS 165 (364)
Q Consensus 86 li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~t 165 (364)
=+...+...|++|++=+++| ..|.. ++ ..-.++.+..+. .+ .-+.+++|++.++++++
T Consensus 254 ~~~~~l~~~Gi~~i~aglfG-~~p~t---~~---~~~~~~~~~tg~-----------~s----r~~~~~~~~~lil~~l~ 311 (406)
T TIGR03173 254 DLAGGLRADGLGSALGGLFN-TFPYT---SF---SQNVGLVQLTGV-----------KS----RYVVAAAGVILVLLGLF 311 (406)
T ss_pred hccchHHhccHHHHHHHHhC-CCCCc---ch---hhhHHHHHHhCC-----------Cc----hHhHHHHHHHHHHHHHH
Confidence 45778899999999999987 47743 22 111111111110 01 22237788888888887
Q ss_pred hhHHHHhhhcCccchHHH
Q 017875 166 GAWGNLARFFSPIVIVPF 183 (364)
Q Consensus 166 g~~~~l~~~fPP~V~G~~ 183 (364)
+.+..+.+.+|..|+|.+
T Consensus 312 ~~~~~l~~~iP~~vlgg~ 329 (406)
T TIGR03173 312 PKLAALVASIPQPVLGGA 329 (406)
T ss_pred HHHHHHHHhCCHHHHHHH
Confidence 778999999998887763
No 43
>PRK10711 hypothetical protein; Provisional
Probab=27.55 E-value=2.1e+02 Score=26.88 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=38.0
Q ss_pred cCccchHHHHHHHhhhhhhhhcccc--cc---ccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHH
Q 017875 175 FSPIVIVPFVCVVGLGLFMRGFPLL--GN---CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAI 249 (364)
Q Consensus 175 fPP~V~G~~i~lIGlsl~~~~~~~~--g~---~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~ 249 (364)
+.|+++.+.+...-+.+.+.--+.. |. ++.++-.++.+.+=+.+..+.+++ +..++++|+.+|.+++..
T Consensus 31 l~Pll~s~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~~lk~------~~~~I~~~~~vG~~v~i~ 104 (231)
T PRK10711 31 LNPLLVAMVVIIPFLLLTGIPYEHYFKGSEVLNDLLQPAVVALAFPLYEQLHQIRA------RWKSIISICFIGSVVAMV 104 (231)
T ss_pred ccHHHHHHHHHHHHHHHhCCCHHHHHhccHHHHhhhhHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 4577777765555444433322221 22 455666676666656443333321 124777777777777654
Q ss_pred HH
Q 017875 250 LT 251 (364)
Q Consensus 250 lg 251 (364)
..
T Consensus 105 s~ 106 (231)
T PRK10711 105 TG 106 (231)
T ss_pred HH
Confidence 43
No 44
>PRK11663 regulatory protein UhpC; Provisional
Probab=27.08 E-value=4.9e+02 Score=25.83 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 017875 66 VLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF 104 (364)
Q Consensus 66 i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~ 104 (364)
...|.+..+ +|++.++...+.+...+..+++.++-+++
T Consensus 44 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l 81 (434)
T PRK11663 44 AAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIV 81 (434)
T ss_pred HhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 345655544 79998888888888888888888877763
No 45
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=26.63 E-value=2.5e+02 Score=26.30 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=38.1
Q ss_pred HHHhh-hcCccchHHHHHHHhhhhhhhhcccc--cc---ccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHH
Q 017875 169 GNLAR-FFSPIVIVPFVCVVGLGLFMRGFPLL--GN---CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGV 242 (364)
Q Consensus 169 ~~l~~-~fPP~V~G~~i~lIGlsl~~~~~~~~--g~---~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~v 242 (364)
+|.++ ++.|+++.+.+...-+.+.+.--+.. |. ++.++-.+..+.+=+.+..+.+++ . ..++++++.+
T Consensus 23 ~r~~~~~lnPvl~~~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~~~~~lk~----~--~~~Il~~~~~ 96 (226)
T TIGR00659 23 QRFKRPYLNPLLLTPLVLVGILLLVGIPYESYMLGGGVINDLLGPAVVALAIPLYKQLPQIKK----Y--WKEIILNVAV 96 (226)
T ss_pred HHcCCccccHHHHHHHHHHHHHHHhCCCHHHHHHhhHHHHHhhHHHHHHHHHHHHHhHHHHHH----H--HHHHHHHHHH
Confidence 34333 45677777775555444433322221 22 345565666666655444333321 1 2456666666
Q ss_pred HHHHHHHH
Q 017875 243 VWAFAAIL 250 (364)
Q Consensus 243 G~~va~~l 250 (364)
|.+++...
T Consensus 97 G~~~~~~s 104 (226)
T TIGR00659 97 GSVIAIIS 104 (226)
T ss_pred HHHHHHHH
Confidence 66665544
No 46
>COG4129 Predicted membrane protein [Function unknown]
Probab=26.63 E-value=6.4e+02 Score=24.99 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhhh
Q 017875 88 QSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGA 167 (364)
Q Consensus 88 ~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg~ 167 (364)
-.|-++.+++.++--++|+..|. ||-+.+++.+-.+.. .+...+++-++|.++..++-.+.+..+|
T Consensus 14 lKt~ia~~La~~ia~~l~~~~~~-----~A~i~AV~~l~~t~~--------~s~~~~~~r~~g~~iG~~~a~l~~~l~g- 79 (332)
T COG4129 14 LKTGLAAGLALLIAHLLGLPQPA-----FAGISAVLCLSPTIK--------RSLKRALQRLLGNALGAILAVLFFLLFG- 79 (332)
T ss_pred HHHHHHHHHHHHHHHHhCCCchH-----HHHHHHhhcccCcch--------HHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 34556677777776677776653 333333333221110 1223456667777665555555444433
Q ss_pred HHHHhhhcCccchHHHHHHH
Q 017875 168 WGNLARFFSPIVIVPFVCVV 187 (364)
Q Consensus 168 ~~~l~~~fPP~V~G~~i~lI 187 (364)
.-|+..|++++++
T Consensus 80 -------~~~~~~~v~~~i~ 92 (332)
T COG4129 80 -------QNPIAFGVVLLII 92 (332)
T ss_pred -------ccHHHHHHHHHHH
Confidence 3355566655544
No 47
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=25.52 E-value=36 Score=32.06 Aligned_cols=7 Identities=29% Similarity=0.781 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 017875 94 SGLNTLL 100 (364)
Q Consensus 94 sGI~Tll 100 (364)
+|++-++
T Consensus 23 ~g~ai~I 29 (280)
T PF00916_consen 23 AGIAILI 29 (280)
T ss_pred HHHHHHH
Confidence 4444333
No 48
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=25.50 E-value=9.4e+02 Score=26.54 Aligned_cols=39 Identities=8% Similarity=-0.040 Sum_probs=30.1
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHH----hccCcceEec
Q 017875 75 LMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTVMG 113 (364)
Q Consensus 75 a~Gl~~~~~~~li~at~~~sGI~Tllq~~----~G~rlPiv~g 113 (364)
..|++..+...+.+..++...++.++-++ +|.|-.++.+
T Consensus 196 ~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~ 238 (742)
T TIGR01299 196 DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC 238 (742)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 36899888888888888889999998886 5666555443
No 49
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=25.15 E-value=2.3e+02 Score=27.50 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH----hccCcceEec
Q 017875 52 LLAFQHYIVMLGTTVL---ISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTVMG 113 (364)
Q Consensus 52 ~~GlQh~l~m~~~~i~---vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~----~G~rlPiv~g 113 (364)
.+.+.+++..++..+. .|..+.+..|.++.+.....+...+...++.++-+. +|.|..++.+
T Consensus 19 ~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~ 87 (399)
T PRK05122 19 SIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG 87 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH
Confidence 3445555555554443 344455667999888888888888888888887776 4666555443
No 50
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=23.93 E-value=3.2e+02 Score=25.71 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=37.7
Q ss_pred cCccchHHHHHHHhhhhhhhhcccc--cc---ccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHH
Q 017875 175 FSPIVIVPFVCVVGLGLFMRGFPLL--GN---CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAI 249 (364)
Q Consensus 175 fPP~V~G~~i~lIGlsl~~~~~~~~--g~---~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~ 249 (364)
+.|+++.+.+...-+.+...--+.. |. ++.++-.++.+.+=+.+..+.+++ +..++++|+.+|.+++..
T Consensus 36 lnPll~s~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~~lk~------~~~~Il~~~~vG~~~~i~ 109 (232)
T PRK04288 36 FTPLFVAMVLGIAFLKLTGISYEEYNIGGDIISFFLEPATIAFAIPLYKKRDVLKK------YWWQILGGIVVGSVCSVL 109 (232)
T ss_pred hhHHHHHHHHHHHHHHHhCCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 5677777766655444443322221 22 445666666666655443333321 124677777777776654
Q ss_pred H
Q 017875 250 L 250 (364)
Q Consensus 250 l 250 (364)
.
T Consensus 110 s 110 (232)
T PRK04288 110 I 110 (232)
T ss_pred H
Confidence 4
No 51
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=23.74 E-value=4e+02 Score=27.92 Aligned_cols=148 Identities=19% Similarity=0.229 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 017875 83 KGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVL 162 (364)
Q Consensus 83 ~~~li~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~ill 162 (364)
..+.+++.+..=|+++++-+++|..- |.+- ...+.+.-+.+ +- .+-+. +=+++.+.+++
T Consensus 303 P~~~inRgi~~eGig~lL~gl~G~gt----G~Tt--------~~ENigll~vT----KV-gSRrv----vQ~aa~fmI~~ 361 (510)
T KOG1292|consen 303 PPSVLNRGIGWEGIGSLLAGLFGTGT----GSTT--------SVENIGLLGVT----KV-GSRRV----VQIAAGFMIFF 361 (510)
T ss_pred ChhhhhhhhhhhhHHHHHHHhhCCCc----ccee--------eccceeeEeee----ee-eeeee----hhhhHHHHHHH
Confidence 36789999999999999999987532 1110 00000000000 00 01111 33677888889
Q ss_pred HhhhhHHHHhhhcCccchHHHHHH-Hhhhhhhhhcccc-----c--cccchhHhHHHHHHHHHHHhhhhc---ccchhhh
Q 017875 163 GYSGAWGNLARFFSPIVIVPFVCV-VGLGLFMRGFPLL-----G--NCVEIGLPMLVLLVICQQYLKRLH---PKAHFIV 231 (364)
Q Consensus 163 g~tg~~~~l~~~fPP~V~G~~i~l-IGlsl~~~~~~~~-----g--~~~~v~l~~l~~~iil~~~~k~~~---~~~~~~~ 231 (364)
|..+-++.+..-+|..+.|-+.++ .|+ ...++++++ . .|..+--+.+.+-+.+-+|.++.. +++.+++
T Consensus 362 ~i~gKFgA~fAsIP~piv~~l~c~~~~m-v~avgLSnLQf~dlns~RNl~IlG~Sif~gLsip~yF~~~~~~v~Tg~~~~ 440 (510)
T KOG1292|consen 362 GIFGKFGAFFASIPDPIVGGLLCILFGM-VGAVGLSNLQFVDLNSSRNLFILGFSIFLGLSIPQYFEQYPGPVHTGNGWF 440 (510)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHhhhhheeeccccccchhhhhHHHHHhccHHHHHHhCCCccccCcHHH
Confidence 988888999999996555544433 222 123344332 2 233222233334444456666554 2233333
Q ss_pred hh-hHHH--HHHHHHHHHHHHHHh
Q 017875 232 ER-FALL--FCIGVVWAFAAILTA 252 (364)
Q Consensus 232 r~-~avL--igi~vG~~va~~lg~ 252 (364)
.. ..++ .-+.+|-++|..+.-
T Consensus 441 d~ilnvll~~~m~Vggi~A~~LDn 464 (510)
T KOG1292|consen 441 DDILNVLLSSRMLVGGILAFILDN 464 (510)
T ss_pred HHHHHHHhhHHHHHHHHHhhhccc
Confidence 22 3455 447888888888864
No 52
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=23.72 E-value=8.3e+02 Score=25.27 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=39.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHH-H---HHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH----hccCcceEeccc
Q 017875 48 PQALLLAFQHYIVMLGTTVLI-S---STLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTVMGPS 115 (364)
Q Consensus 48 ~~~~~~GlQh~l~m~~~~i~v-P---~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~----~G~rlPiv~gps 115 (364)
++++.++.=-+...|..-... | .+....+|++++|...+.+...+..++.-+.-+. +|.|..+..+..
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~l 108 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTA 108 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 455555554454444433322 2 2222247899998888888777777776555554 688875544433
No 53
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=22.71 E-value=3.7e+02 Score=25.32 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=39.8
Q ss_pred hHHHHh-hhcCccchHHHHHHHhhhhhhhhccc--ccccc---chhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHH
Q 017875 167 AWGNLA-RFFSPIVIVPFVCVVGLGLFMRGFPL--LGNCV---EIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCI 240 (364)
Q Consensus 167 ~~~~l~-~~fPP~V~G~~i~lIGlsl~~~~~~~--~g~~~---~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi 240 (364)
+.+|-| .++-|+.+++.+...=+.+..+--++ .|.+| .++-.+.++.+=+.+..+.+. +.| .+++.|+
T Consensus 24 l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~~Y~~g~~~i~~lLgPAtVAlAvPLYkq~~~ik---~~w---~~I~~g~ 97 (230)
T COG1346 24 LYKRTKSPFLNPLLVATVLLIAFLLLFGISYEDYMKGGQWINFLLGPATVALAVPLYKQRHLIK---RHW---KPILAGV 97 (230)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHHHcCCCHHHHhcccHHHHHHHHHHHHHHhhHHHHHHHHHH---HHH---HHHHHHH
Confidence 455555 33337777766555433333332222 23333 345555555555533222221 111 3778888
Q ss_pred HHHHHHHHHHH
Q 017875 241 GVVWAFAAILT 251 (364)
Q Consensus 241 ~vG~~va~~lg 251 (364)
++|.+++...+
T Consensus 98 ~vGs~~ai~s~ 108 (230)
T COG1346 98 LVGSVVAIISG 108 (230)
T ss_pred HHHHHHHHHHH
Confidence 88887776655
No 54
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=22.60 E-value=8.4e+02 Score=24.94 Aligned_cols=46 Identities=17% Similarity=0.113 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhh--hhHHHHhhhcCccchHHHHHHHhhhhh
Q 017875 144 TIRTIQGSLIVSSFINIVLGYS--GAWGNLARFFSPIVIVPFVCVVGLGLF 192 (364)
Q Consensus 144 ~~~~~~Ga~ivsGli~illg~t--g~~~~l~~~fPP~V~G~~i~lIGlsl~ 192 (364)
++-+.+=+.+++|-+ +|.- -+.+-+.|+|||.+.|.+-+...-.+.
T Consensus 111 nFL~fyIA~LI~GSI---LgmnRklLIk~~~~~i~~il~g~v~A~~~g~lV 158 (438)
T COG3493 111 NFLDFYIAALIVGSI---LGMNRKLLIKSLKRYIPPILAGMVGAAAVGILV 158 (438)
T ss_pred ChHHHHHHHHHHhhh---hhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 345556666666654 3332 245778999999998887665443333
No 55
>PF15471 TMEM171: Transmembrane protein family 171
Probab=21.37 E-value=82 Score=30.31 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCCC
Q 017875 10 PPPPQAAPPSLGLSR 24 (364)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (364)
||||++|||.--.++
T Consensus 220 PPPPPPYF~ess~~a 234 (319)
T PF15471_consen 220 PPPPPPYFPESSASA 234 (319)
T ss_pred CCccCCCCCCCCccc
Confidence 566677877633443
No 56
>PRK10739 putative antibiotic transporter; Provisional
Probab=20.02 E-value=3.6e+02 Score=24.53 Aligned_cols=30 Identities=10% Similarity=0.261 Sum_probs=19.6
Q ss_pred HHHHhhhcCcc-------chHHHHHHHhhhhhhhhcc
Q 017875 168 WGNLARFFSPI-------VIVPFVCVVGLGLFMRGFP 197 (364)
Q Consensus 168 ~~~l~~~fPP~-------V~G~~i~lIGlsl~~~~~~ 197 (364)
-+++.|++.+. +.|.+++.||.+.+-.|+.
T Consensus 156 s~~i~~~LG~~g~~vi~RimGllLaaiavq~i~~Gi~ 192 (197)
T PRK10739 156 SSLFLRLLGEKGVNALERLMGLILVMLSTQMFLDGIR 192 (197)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777763 4677777777766655543
Done!