Query 017875
Match_columns 364
No_of_seqs 170 out of 1142
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 3.3E-49 1.1E-53 397.0 24.6 272 35-359 2-288 (429)
2 1pw4_A Glycerol-3-phosphate tr 36.2 2.6E+02 0.0088 25.7 12.6 38 66-103 273-310 (451)
3 3o7q_A L-fucose-proton symport 26.0 3.8E+02 0.013 24.4 13.0 37 67-103 280-317 (438)
4 3qe7_A Uracil permease; uracil 18.3 6.5E+02 0.022 24.2 12.4 75 87-183 263-337 (429)
5 3o7q_A L-fucose-proton symport 17.6 5.6E+02 0.019 23.2 13.2 100 68-181 49-152 (438)
6 4hsp_A Hypothetical protein; P 16.1 41 0.0014 28.3 0.7 12 4-15 85-96 (150)
7 1bts_A BAND 3 anion transport 14.9 64 0.0022 18.8 1.2 23 334-356 3-25 (26)
8 2kxc_B ESPF-like protein; IRTK 14.6 1.1E+02 0.0037 20.5 2.4 25 3-28 23-47 (48)
9 1pw4_A Glycerol-3-phosphate tr 12.5 5.3E+02 0.018 23.4 7.7 63 47-111 27-96 (451)
10 2ifo_A Inovirus; helical virus 10.3 2.4E+02 0.0081 18.8 3.0 19 157-175 28-46 (46)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=3.3e-49 Score=396.99 Aligned_cols=272 Identities=23% Similarity=0.331 Sum_probs=240.9
Q ss_pred cccccccCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh-ccCcceEec
Q 017875 35 QQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF-GTRLPTVMG 113 (364)
Q Consensus 35 ~~~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~-G~rlPiv~g 113 (364)
.|+.|++|||+|+++++++|+||+++|+++++++|+++ |+|+ +++++++|++|++|+++ |+|+|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G 70 (429)
T 3qe7_A 2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLG 70 (429)
T ss_dssp --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEec
Confidence 46789999999999999999999999999999999998 7886 58999999999999986 899999999
Q ss_pred cccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhh--hhH-HHHhhhcCccchHHHHHHHhhh
Q 017875 114 PSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYS--GAW-GNLARFFSPIVIVPFVCVVGLG 190 (364)
Q Consensus 114 psfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~t--g~~-~~l~~~fPP~V~G~~i~lIGls 190 (364)
+||+|+.++.++.. ++|++++|+++++|+++++++.+ ++. +|++|+|||+|+|.++++||++
T Consensus 71 ~sfafi~~~~~i~~---------------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~ 135 (429)
T 3qe7_A 71 SSFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLE 135 (429)
T ss_dssp ECGGGHHHHHHHGG---------------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHH
Confidence 99999999987754 26999999999999999999987 544 7999999999999999999999
Q ss_pred hhhhhccccc-----------cccchhHhHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 017875 191 LFMRGFPLLG-----------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNV 259 (364)
Q Consensus 191 l~~~~~~~~g-----------~~~~v~l~~l~~~iil~~~~k~~~~~~~~~~r~~avLigi~vG~~va~~lg~~g~~~~~ 259 (364)
+++.++++.+ .++.+++.+++++++++++.|+ ++|++++|+|+++||++++.+|.
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~kg-------~~~~~aiLigivvg~~~a~~~G~------- 201 (429)
T 3qe7_A 136 LAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRG-------FLAIIPILIGVLVGYALSFAMGI------- 201 (429)
T ss_dssp HHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSST-------TTTTHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhcc-------cchhhHHHHHHHHHHHHHHHhcC-------
Confidence 9999886542 2467888888888888776654 47789999999999999999984
Q ss_pred ccccccccccCccccccCCCccccccccccccccchhhHHHHHHHHHHHHhHhhhhhHHHHHhHhCCCCCCcccCCchhH
Q 017875 260 PEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIG 339 (364)
Q Consensus 260 ~~~~~~~~~~d~~~~v~~a~w~~~P~~~~~g~P~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~g~~~~~~~~i~rgi~ 339 (364)
+|++. +.+++|+++|. |+.|+||+++++.++++++++++|++||+.++++.+|++..+++++||++.
T Consensus 202 ---------~d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~ 268 (429)
T 3qe7_A 202 ---------VDTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMF 268 (429)
T ss_dssp ---------TTSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHH
T ss_pred ---------CCccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHH
Confidence 46664 67789999994 677999999999999999999999999999999999865446788999999
Q ss_pred HHhHHHHHhhhcCCCcchhh
Q 017875 340 LQVLSLSSLLHFLLFIYFSI 359 (364)
Q Consensus 340 ~dGl~t~~~~~fG~~p~~~~ 359 (364)
+||++|+++++||++|+++|
T Consensus 269 adGla~i~~glfGg~p~Tt~ 288 (429)
T 3qe7_A 269 ANGLSTVISGFFGSTPNTTY 288 (429)
T ss_dssp HHHHHHHHHHHHTCCCEEEC
T ss_pred HHHHHHHHHHhcCCCCcchH
Confidence 99999999999999999775
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=36.18 E-value=2.6e+02 Score=25.65 Aligned_cols=38 Identities=11% Similarity=-0.129 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 017875 66 VLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (364)
Q Consensus 66 i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~ 103 (364)
...|..+.+..|++..+...+.....+...++.++-.+
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34576766667888877776666666666666666665
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=25.99 E-value=3.8e+02 Score=24.39 Aligned_cols=37 Identities=8% Similarity=0.018 Sum_probs=25.4
Q ss_pred HHHHH-HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 017875 67 LISST-LVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (364)
Q Consensus 67 ~vP~i-l~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~ 103 (364)
..|.. +.+..|.+.++...+.....+...++.++-.+
T Consensus 280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34656 66666998877777666666666677776665
No 4
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=18.30 E-value=6.5e+02 Score=24.22 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCcceEeccccchHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHhhh
Q 017875 87 IQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSG 166 (364)
Q Consensus 87 i~at~~~sGI~Tllq~~~G~rlPiv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivsGli~illg~tg 166 (364)
+...+++-|++|++=+++| ..|.-- ++ -- ..+.+..+. .+ +. +...+|++.+++++++
T Consensus 263 ~~r~l~adGla~i~~glfG-g~p~Tt---~~--en-~g~i~~tg~-----------~s-r~---~~~~ag~~lillgl~p 320 (429)
T 3qe7_A 263 LHRSMFANGLSTVISGFFG-STPNTT---YG--EN-IGVMAITRV-----------YS-TW---VIGGAAIFAILLSCVG 320 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCCEEE---CH--HH-HHHHHHHTB-----------CC-HH---HHHHHHHHHHHHTCCH
T ss_pred cchHHHHHHHHHHHHHhcC-CCCcch---HH--Hh-HHHHHhcCC-----------cc-hH---HHHHHHHHHHHHHHHH
Confidence 5778999999999999997 477532 21 11 111111111 11 11 3478888889999877
Q ss_pred hHHHHhhhcCccchHHH
Q 017875 167 AWGNLARFFSPIVIVPF 183 (364)
Q Consensus 167 ~~~~l~~~fPP~V~G~~ 183 (364)
.+..+...+|..|.|-+
T Consensus 321 k~~al~~~IP~~vlgg~ 337 (429)
T 3qe7_A 321 KLAAAIQMIPLPVMGGV 337 (429)
T ss_dssp HHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHccHHHHHHH
Confidence 77889999998777654
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=17.59 E-value=5.6e+02 Score=23.17 Aligned_cols=100 Identities=7% Similarity=-0.144 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH----hccCcceEeccccchHHHHHHHHhhcCCCCCCCccccccc
Q 017875 68 ISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRH 143 (364)
Q Consensus 68 vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~----~G~rlPiv~gpsfa~l~~~~~i~~~~~~~~~~~~~~~~~~ 143 (364)
.|. +.+.+|++..+...+.+...+...++.++-+. +|.|..++.+.....+........... .
T Consensus 49 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------------~ 115 (438)
T 3o7q_A 49 LPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI------------M 115 (438)
T ss_dssp HHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT------------T
T ss_pred HHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc------------c
Confidence 344 44558999999888888888888888888876 466655554443311111111000110 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCccchH
Q 017875 144 TIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIV 181 (364)
Q Consensus 144 ~~~~~~Ga~ivsGli~illg~tg~~~~l~~~fPP~V~G 181 (364)
++..+..+.++.|+..-..... ....+.+.+|+.--+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~~r~ 152 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPESSGH 152 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCSTTHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhh-HHHHHHHHcCchhHH
Confidence 4555666666666655433321 346678888875433
No 6
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=16.05 E-value=41 Score=28.27 Aligned_cols=12 Identities=42% Similarity=0.886 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCC
Q 017875 4 TAGHHPPPPPQA 15 (364)
Q Consensus 4 ~~~~~~~~~~~~ 15 (364)
+|-|.|||||..
T Consensus 85 ACiH~PPPPpNQ 96 (150)
T 4hsp_A 85 ACIHVPPPPSNQ 96 (150)
T ss_dssp BTTTBCCCCGGG
T ss_pred cCcCCCCCCCce
Confidence 688888887754
No 7
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=14.87 E-value=64 Score=18.84 Aligned_cols=23 Identities=4% Similarity=-0.188 Sum_probs=17.5
Q ss_pred CCchhHHHhHHHHHhhhcCCCcc
Q 017875 334 LSRSIGLQVLSLSSLLHFLLFIY 356 (364)
Q Consensus 334 i~rgi~~dGl~t~~~~~fG~~p~ 356 (364)
+++.+++++++.++-++|++-|.
T Consensus 3 v~E~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHHHHHHhcccC
Confidence 45778999999999999998875
No 8
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=14.62 E-value=1.1e+02 Score=20.53 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 017875 3 ETAGHHPPPPPQAAPPSLGLSRGPIW 28 (364)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (364)
|+..|-|+-|-..+||+ |++.++++
T Consensus 23 ~~s~~~p~rPa~P~Pt~-~~~~~~s~ 47 (48)
T 2kxc_B 23 NMAEHIPPAPNWPAPTP-PVQNEQSR 47 (48)
T ss_pred hhhccCCCCCCCCCCCC-ccccccCC
Confidence 45555544333333333 45555443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=12.47 E-value=5.3e+02 Score=23.36 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=37.6
Q ss_pred hhHhHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH----hccCcceE
Q 017875 47 WPQALLLAFQHYIVMLGT---TVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTV 111 (364)
Q Consensus 47 ~~~~~~~GlQh~l~m~~~---~i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~----~G~rlPiv 111 (364)
+.......+.+++..+.. ....|.+..+ . .+..+...+.+...+...++.++-+. +|.|-.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~ 96 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP 96 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHH
Confidence 344445555555544332 2233444433 5 78888888888888888888888776 45554333
No 10
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=10.28 E-value=2.4e+02 Score=18.76 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=11.4
Q ss_pred HHHHHHHhhhhHHHHhhhc
Q 017875 157 FINIVLGYSGAWGNLARFF 175 (364)
Q Consensus 157 li~illg~tg~~~~l~~~f 175 (364)
.+..++...+.++|+||.+
T Consensus 28 aVLgV~v~i~v~k~IRral 46 (46)
T 2ifo_A 28 AVLTVMVGIKVYKWVRRAM 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3333333446789999864
Done!