Query 017875
Match_columns 364
No_of_seqs 170 out of 1142
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 06:20:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017875.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017875hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 15.1 1.3E+02 0.0096 25.1 6.5 36 66-103 46-81 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 11.9 2.1E+02 0.016 22.8 6.8 45 69-113 31-79 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 11.1 3.8E+02 0.028 21.8 16.1 37 68-104 272-308 (447)
4 d1zeea1 a.266.1.2 (A:6-392) Hy 4.3 4.8E+02 0.035 22.7 5.1 50 310-359 72-121 (387)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 4.2 3.2E+02 0.024 14.6 4.1 14 234-247 12-25 (32)
6 d1j8ca_ d.15.1.1 (A:) Ubiquiti 4.2 3.9E+02 0.028 18.1 3.9 15 1-15 1-15 (103)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 4.2 7.2E+02 0.053 18.6 6.2 13 336-348 141-153 (199)
8 d1q90m_ f.23.25.1 (M:) PetM su 3.2 3.3E+02 0.024 15.0 1.9 15 180-194 6-20 (34)
9 d1d6ga_ g.33.1.1 (A:) Cholecys 2.8 2.6E+02 0.019 16.9 1.3 11 3-13 25-35 (47)
10 d1rh5b_ f.23.28.1 (B:) Preprot 2.6 1.5E+02 0.011 18.9 -0.1 26 327-352 16-41 (56)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=15.06 E-value=1.3e+02 Score=25.11 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 017875 66 VLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (364)
Q Consensus 66 i~vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~ 103 (364)
++.|.+ .+ .|++..|...+.+...+..+++.++-+.
T Consensus 46 ~~~p~~-~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~ 81 (447)
T d1pw4a_ 46 LAMPYL-VE-QGFSRGDLGFALSGISIAYGFSKFIMGS 81 (447)
T ss_dssp HHHHHT-TS-STTCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-hCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344644 33 6999999999999988999999988886
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=11.93 E-value=2.1e+02 Score=22.77 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH----hccCcceEec
Q 017875 69 SSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTVMG 113 (364)
Q Consensus 69 P~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~----~G~rlPiv~g 113 (364)
|.-+.+..|++..|...+.+...+...++.++-+. +|.|-.++.+
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~ 79 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI 79 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 44466778999999988888888888888888876 5777655443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.15 E-value=3.8e+02 Score=21.79 Aligned_cols=37 Identities=11% Similarity=-0.086 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 017875 68 ISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF 104 (364)
Q Consensus 68 vP~il~~a~Gl~~~~~~~li~at~~~sGI~Tllq~~~ 104 (364)
.|..+.+..+.+.++.........+...+++++..++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 4666666678888888777777777777888887764
No 4
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=4.27 E-value=4.8e+02 Score=22.72 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=41.5
Q ss_pred hHhhhhhHHHHHhHhCCCCCCcccCCchhHHHhHHHHHhhhcCCCcchhh
Q 017875 310 SAESTGTFIAASRFAGATAPPAHVLSRSIGLQVLSLSSLLHFLLFIYFSI 359 (364)
Q Consensus 310 ~~esiG~~~a~~~~~g~~~~~~~~i~rgi~~dGl~t~~~~~fG~~p~~~~ 359 (364)
...++|-+++.+|.-+..+|.++..+...-+++++-=+++-.|..|-.++
T Consensus 72 llgnvg~ym~acrrh~i~ep~re~~~p~~eas~la~~~~as~gv~prf~~ 121 (387)
T d1zeea1 72 LLGNVGLYMAACRRHEITEPTRETTSPLLEASALAMHIGASIGVTPRFAT 121 (387)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTTCSSCSCHHHHHHHHHHHHHHTSCSSCCH
T ss_pred HHhhhHHHHHHHHhccCCCccccccCchhhhHHHHHHHHHhcCCCchhhh
Confidence 45678999999998776677777788899999999999999999987543
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.22 E-value=3.2e+02 Score=14.64 Aligned_cols=14 Identities=50% Similarity=0.615 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHH
Q 017875 234 FALLFCIGVVWAFA 247 (364)
Q Consensus 234 ~avLigi~vG~~va 247 (364)
.+...|+.+|.+.+
T Consensus 12 ialffgiavgiifa 25 (32)
T d2e74e1 12 IALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheee
Confidence 45556666666554
No 6
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.17 E-value=3.9e+02 Score=18.10 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCCCC
Q 017875 1 MGETAGHHPPPPPQA 15 (364)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (364)
|+|..-.-.||.|..
T Consensus 1 m~~~~~ss~pp~~s~ 15 (103)
T d1j8ca_ 1 MAENGESSGPPRPSR 15 (103)
T ss_dssp CCCSCCCCCCCSSCC
T ss_pred CCccCccCCCCCCCC
Confidence 677665544444433
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.16 E-value=7.2e+02 Score=18.63 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=6.4
Q ss_pred chhHHHhHHHHHh
Q 017875 336 RSIGLQVLSLSSL 348 (364)
Q Consensus 336 rgi~~dGl~t~~~ 348 (364)
+.+...++.++++
T Consensus 141 ~~i~~s~lTt~~~ 153 (199)
T d1iwga7 141 GALVGIAMVLSAV 153 (199)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4455555555443
No 8
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.16 E-value=3.3e+02 Score=14.97 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=8.1
Q ss_pred hHHHHHHHhhhhhhh
Q 017875 180 IVPFVCVVGLGLFMR 194 (364)
Q Consensus 180 ~G~~i~lIGlsl~~~ 194 (364)
.|+...++|+.+.+.
T Consensus 6 agta~tmig~tl~gl 20 (34)
T d1q90m_ 6 AGTALTMVGMTLVGL 20 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH
Confidence 455556666655443
No 9
>d1d6ga_ g.33.1.1 (A:) Cholecystokinin A receptor, N-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.84 E-value=2.6e+02 Score=16.88 Aligned_cols=11 Identities=36% Similarity=0.302 Sum_probs=5.9
Q ss_pred CCCCCCCCCCC
Q 017875 3 ETAGHHPPPPP 13 (364)
Q Consensus 3 ~~~~~~~~~~~ 13 (364)
||-+|+-.|.|
T Consensus 25 eT~~Cld~P~p 35 (47)
T d1d6ga_ 25 ETLFCLDQPRP 35 (47)
T ss_dssp SCCBSCCCCSS
T ss_pred ceEEEcCCCCC
Confidence 56666655433
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.56 E-value=1.5e+02 Score=18.91 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=22.2
Q ss_pred CCCCcccCCchhHHHhHHHHHhhhcC
Q 017875 327 TAPPAHVLSRSIGLQVLSLSSLLHFL 352 (364)
Q Consensus 327 ~~~~~~~i~rgi~~dGl~t~~~~~fG 352 (364)
+.|+.++.++.-.+.|+|-.+-|+.|
T Consensus 16 ~KP~~~Ef~~ia~v~~iG~~i~G~IG 41 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKVTALGISLLGIIG 41 (56)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999998888765
Done!