BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017877
(364 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C7P8|LHWL1_ARATH Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444
PE=2 SV=1
Length = 734
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 92/211 (43%), Gaps = 70/211 (33%)
Query: 10 MTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWED 69
M + LQ LRS+C N+ W YAVFW++ N+ P +L ED
Sbjct: 1 MGYTLQQILRSIC--SNTDWNYAVFWKL---NHHSP-----------------MVLTLED 38
Query: 70 GFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELF--------------FKMSHE 115
+C H +GL PE KMS+
Sbjct: 39 VYC-------------------------VNHERGLMPESLHGGRHAHDPLGLAVAKMSYH 73
Query: 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIAL 175
+++ GEG++G+VA H+WI+ E +L+ H+ H WE+Q +GIKTI +
Sbjct: 74 VHSLGEGIVGQVAISGQHQWIFSE-------YLNDSHSTLQVH-NGWESQISAGIKTILI 125
Query: 176 IAVRE-GVVQLGAVNKVVEDLNYVVLLRKKF 205
+AV GVVQLG++ KV ED V +R F
Sbjct: 126 VAVGSCGVVQLGSLCKVEEDPALVTHIRHLF 156
>sp|Q58G01|LHWL3_ARATH Transcription factor bHLH155 OS=Arabidopsis thaliana GN=BHLH155
PE=2 SV=1
Length = 720
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 55/195 (28%)
Query: 15 QHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNF 74
Q L+S C N+ W YAVFW++ RG+R +L ED + +
Sbjct: 6 QEILKSFCF--NTDWDYAVFWQL-----------------NHRGSR--MVLTLEDAYYDH 44
Query: 75 AASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFF---KMSHEIYNYGEGLIGKVAADH 131
+ + G L KMS+ +Y+ GEG++G+VA
Sbjct: 45 HGT----------------------NMHGAHDPLGLAVAKMSYHVYSLGEGIVGQVAVSG 82
Query: 132 SHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVRE-GVVQLGAVNK 190
H+W++ E N N +HN WE+Q +GIKTI ++AV GVVQLG++ K
Sbjct: 83 EHQWVFPE-NYNNCNSAFEFHNV-------WESQISAGIKTILVVAVGPCGVVQLGSLCK 134
Query: 191 VVEDLNYVVLLRKKF 205
V ED+N+V +R F
Sbjct: 135 VNEDVNFVNHIRHLF 149
>sp|Q9XIN0|LHW_ARATH Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1
Length = 650
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 46/212 (21%)
Query: 10 MTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWED 69
M LL+ LRS+C+ N+QW YAVFW+I G + + +L+WE+
Sbjct: 1 MGVLLREALRSMCV--NNQWSYAVFWKI--------------------GCQNSSLLIWEE 38
Query: 70 GFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAA 129
+ +S+ G GN + Q L + +++ I GEGL+G+ A
Sbjct: 39 CYNETESSSNPRRLCG--LGVDTQGN---EKVQLLTNRMM--LNNRIILVGEGLVGRAAF 91
Query: 130 DHSHKWIYKEPNDQEINFLSAWHNAADSHP----RTWEAQFQSGIKTIALI-AVREGVVQ 184
H+WI ++ D HP QF +GI+T+A+ V GVVQ
Sbjct: 92 TGHHQWILANSFNR------------DVHPPEVINEMLLQFSAGIQTVAVFPVVPHGVVQ 139
Query: 185 LGAVNKVVEDLNYVVLLRKKFSYIESIPGVLL 216
LG+ ++E+L +V ++ + +PG LL
Sbjct: 140 LGSSLPIMENLGFVNDVKGLILQLGCVPGALL 171
>sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2
SV=1
Length = 423
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 41/195 (21%)
Query: 13 LLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDG-F 71
+LQ LR + +W Y +FW+ + +D Q DRS LVW DG F
Sbjct: 34 VLQQKLRFVVETSPDRWAYVIFWQKM--------FDDQS--DRS-------YLVWVDGHF 76
Query: 72 CNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLI-GKVAAD 130
C + + E + ++S+ CE G ELF+ S YGE K +D
Sbjct: 77 CGNKNNNSQE----NYTTNSI--ECELMMDGGDDLELFYAASF----YGEDRSPRKEVSD 126
Query: 131 HSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVREGVVQLGAVNK 190
S W+ E+ F ++ R EA F G+ T+ I + G+++LG+
Sbjct: 127 ESLVWL---TGPDELRF--------SNYERAKEAGFH-GVHTLVSIPINNGIIELGSSES 174
Query: 191 VVEDLNYVVLLRKKF 205
++++ N++ ++ F
Sbjct: 175 IIQNRNFINRVKSIF 189
>sp|Q7XJU0|LHWL2_ARATH Transcription factor bHLH157 OS=Arabidopsis thaliana GN=BHLH157
PE=2 SV=1
Length = 527
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 76/190 (40%)
Query: 15 QHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNF 74
+H L+SLC+ W YAVFWR P N + IL +E+ + N
Sbjct: 6 KHILKSLCLSHG--WSYAVFWRYDPIN--------------------SMILRFEEAY-ND 42
Query: 75 AASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHK 134
S A L M + G+G++G+VA+ +H+
Sbjct: 43 EQSVA----------------------------LVDDMVLQAPILGQGIVGEVASSGNHQ 74
Query: 135 WIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIK----------TIALIAV-REGVV 183
W++ + L W + ++ QF G K TIA+I + GVV
Sbjct: 75 WLFSDT-------LFQWEHE-------FQNQFLCGFKILIRQFTYTQTIAIIPLGSSGVV 120
Query: 184 QLGAVNKVVE 193
QLG+ K++E
Sbjct: 121 QLGSTQKILE 130
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis
thaliana GN=AIB PE=2 SV=2
Length = 566
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 57/208 (27%)
Query: 25 ENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFC------------ 72
EN W YA+FW Q RS G + +L W DG C
Sbjct: 62 ENFSWNYAIFW--------------QQTMSRS-GQQ---VLGWGDGCCREPNEEEESKVV 103
Query: 73 ---NFAASTAAEINSGDCPSS------SVYGNCEFQHY-----QGLQPELFFKMS-HEIY 117
NF A E D ++G + +Y + E+FF S + +
Sbjct: 104 RSYNFNNMGAEEETWQDMRKRVLQKLHRLFGGSDEDNYALSLEKVTATEIFFLASMYFFF 163
Query: 118 NYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIA 177
N+GEG G+ + H W+ N + +D R++ A+ +GI+TI ++
Sbjct: 164 NHGEGGPGRCYSSGKHVWLSDAVNSE-----------SDYCFRSFMAK-SAGIRTIVMVP 211
Query: 178 VREGVVQLGAVNKVVEDLNYVVLLRKKF 205
GV++LG+V + E++ V ++ F
Sbjct: 212 TDAGVLELGSVWSLPENIGLVKSVQALF 239
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2
Length = 518
Score = 38.5 bits (88), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 60/203 (29%)
Query: 29 WVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTA-----AEIN 83
W Y+VFW+ P+ +LVW +G+ N A T AE+
Sbjct: 33 WTYSVFWQFCPQQR---------------------VLVWGNGYYNGAIKTRKTTQPAEVT 71
Query: 84 SGDCP------------------SSSVYGNCEFQHYQGLQPELFFKMSHEIYNYG--EGL 123
+ + S+S C + L +F + +++ G+
Sbjct: 72 AEEAALERSQQLRELYETLLAGESTSEARACTALSPEDLTETEWFYLMCVSFSFPPPSGM 131
Query: 124 IGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSG-IKTIALIAVREGV 182
GK A H W+ + N DS + +S I+T+ I + +GV
Sbjct: 132 PGKAYARRKHVWL-------------SGANEVDSKTFSRAILAKSAKIQTVVCIPMLDGV 178
Query: 183 VQLGAVNKVVEDLNYVVLLRKKF 205
V+LG KV ED+ +V L + F
Sbjct: 179 VELGTTKKVREDVEFVELTKSFF 201
>sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1
SV=1
Length = 637
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 23/156 (14%)
Query: 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSH--PRTWEAQFQSGIKTI 173
++N GEG+ G+ A+ W+ + ADS R+ A+ + +KT+
Sbjct: 129 VFNIGEGMPGRTFANGEPIWLCN-------------AHTADSKVFSRSLLAK-SAAVKTV 174
Query: 174 ALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLP-----HPSSSAYPFKI 228
GVV++G + ED+N + ++ F +LP H + P +I
Sbjct: 175 VCFPFLGGVVEIGTTEHITEDMNVIQCVKTSFLEAPDPYATILPARSDYHIDNVLDPQQI 234
Query: 229 --DGYHAPAEAWHHYQIQNPLAAALPLDHHHHQYYD 262
D +AP + + +P D H Q D
Sbjct: 235 LGDEIYAPMFSTEPFPTASPSRTTNGFDQEHEQVAD 270
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2
Length = 623
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 77/219 (35%), Gaps = 53/219 (24%)
Query: 12 HLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGF 71
LQ L++L + W YA+FW+ P +D GA +L W DG+
Sbjct: 66 ETLQQRLQALIEGTHEGWTYAIFWQ--------PSYDFSGAS----------VLGWGDGY 107
Query: 72 CNFAASTAAEINSGDCPSSSVYGNCEFQHY----------QGLQP------------ELF 109
A P S + E++ G+ P E F
Sbjct: 108 YKGEEDKANPRRRSSSPPFSTPADQEYRKKVLRELNSLISGGVAPSDDAVDEEVTDTEWF 167
Query: 110 FKMS-HEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQS 168
F +S + + G GL GK A + W+ S + S +
Sbjct: 168 FLVSMTQSFACGAGLAGKAFATGNAVWV------------SGSDQLSGSGCERAKQGGVF 215
Query: 169 GIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSY 207
G+ TIA I GVV++G+ + + + + +R F++
Sbjct: 216 GMHTIACIPSANGVVEVGSTEPIRQSSDLINKVRILFNF 254
>sp|Q8NEN9|PDZD8_HUMAN PDZ domain-containing protein 8 OS=Homo sapiens GN=PDZD8 PE=1 SV=1
Length = 1154
Score = 33.5 bits (75), Expect = 2.5, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 275 PSMSSLEALLSKLPSVVPPPPSGDYGESQPPLMSPFVSAAHQRPMEFIQAEKVAKEDTDE 334
P+ + + L+ K VVPPP E Q + AA P +F+ ++VAK+ T E
Sbjct: 607 PNQAEPDVLVEKPEKVVPPPLVDKSAEKQAKNVDAIDDAA--APKQFLAKQEVAKDVTSE 664
Query: 335 DYC 337
C
Sbjct: 665 TSC 667
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2
SV=1
Length = 589
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 72/195 (36%), Gaps = 46/195 (23%)
Query: 14 LQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGF-- 71
LQ L++L N W YAVFW+ G N +L W DG+
Sbjct: 63 LQQRLQALIEGANENWTYAVFWQ-----------SSHGFAGEDNNNNNTVLLGWGDGYYK 111
Query: 72 ----------CNFAASTAA--------EINSGDCPSSSVYGNCEFQHYQGLQPELFFKMS 113
N A++ E+NS S V G E + E FF +S
Sbjct: 112 GEEEKSRKKKSNPASAAEQEHRKRVIRELNS--LISGGVGGGDEAGDEEVTDTEWFFLVS 169
Query: 114 -HEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKT 172
+ + G GL G+ ++ W+ N L A S R + Q G++T
Sbjct: 170 MTQSFVKGTGLPGQAFSNSDTIWLSGS------NAL-----AGSSCERARQGQIY-GLQT 217
Query: 173 IALIAVREGVVQLGA 187
+ +A GVV+LG+
Sbjct: 218 MVCVATENGVVELGS 232
>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate proteoglycan core protein
OS=Mus musculus GN=Hspg2 PE=1 SV=1
Length = 3707
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 166 FQSG-IKTIALIAVRE-GVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSA 223
QSG I IA + + + G + A N ++V+LL + I + P + +P S++
Sbjct: 2855 VQSGTIIRIAHVELADAGQYRCAATNAAGTTQSHVLLLVQALPQISTPPEIRVPAGSAAV 2914
Query: 224 YPFKIDGYHAPAEAW 238
+P GY PA W
Sbjct: 2915 FPCMASGYPTPAITW 2929
>sp|Q9PQW1|GPMI_UREPA 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=gpmI PE=3 SV=1
Length = 502
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 228 IDGYHAPAEAWHHYQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKL 287
I Y P H +Q + A L +DH + YD F + + + IT + E +L
Sbjct: 382 IVNYANPDMVGHSGNMQQTIEAILSVDHEIRKLYDFFEKNNGVLMITGDHGNAEMMLDDQ 441
Query: 288 PSVVPPPPSGD 298
V+ D
Sbjct: 442 KQVITSHSVND 452
>sp|B1AIH0|GPMI_UREP2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 /
NCTC 11736) GN=gpmI PE=3 SV=1
Length = 502
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 228 IDGYHAPAEAWHHYQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKL 287
I Y P H +Q + A L +DH + YD F + + + IT + E +L
Sbjct: 382 IVNYANPDMVGHSGNMQQTIEAILSVDHEIRKLYDFFEKNNGVLMITGDHGNAEMMLDDQ 441
Query: 288 PSVVPPPPSGD 298
V+ D
Sbjct: 442 KQVITSHSVND 452
>sp|Q02439|E13F_HORVU Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum
vulgare PE=3 SV=1
Length = 321
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 25/117 (21%)
Query: 213 GVLLPHPSSSAYPFKIDGYHAPAEAWHHYQIQNPLAAALPLDHHHHQYYDHFNQ---PSS 269
GV+L +S P D +A +W H +Q P A A+ +Y + N+ S
Sbjct: 55 GVVLGTLNSDLAPLASDASYA--ASWVHSYVQ-PFAGAV-----SFRYINAGNEVIPGES 106
Query: 270 AMKITPSMSSLEALLSKLPSVVP--------------PPPSGDYGESQPPLMSPFVS 312
A + P+M +LEA L VP PP G + E+ P + P VS
Sbjct: 107 AALVLPAMKNLEAALQAAGLSVPVTTAMATSVLGTSYPPSQGTFSEAALPTVGPIVS 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,261,110
Number of Sequences: 539616
Number of extensions: 6706094
Number of successful extensions: 20485
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 20300
Number of HSP's gapped (non-prelim): 206
length of query: 364
length of database: 191,569,459
effective HSP length: 119
effective length of query: 245
effective length of database: 127,355,155
effective search space: 31202012975
effective search space used: 31202012975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)