Query 017877
Match_columns 364
No_of_seqs 148 out of 285
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f5m_A GAF; CGMP binding, sign 94.9 0.011 3.7E-07 51.7 2.3 72 116-205 93-173 (180)
2 3dba_A CONE CGMP-specific 3',5 94.8 0.01 3.4E-07 50.4 1.8 78 116-206 82-168 (180)
3 3trc_A Phosphoenolpyruvate-pro 94.5 0.088 3E-06 41.8 6.8 74 116-203 72-153 (171)
4 3e0y_A Conserved domain protei 93.7 0.14 4.9E-06 40.8 6.4 76 116-205 77-160 (181)
5 1vhm_A Protein YEBR; structura 93.2 0.04 1.4E-06 49.3 2.7 73 116-206 88-168 (195)
6 3ci6_A Phosphoenolpyruvate-pro 93.0 0.17 5.8E-06 39.5 5.7 74 116-203 74-155 (171)
7 2w3g_A DOSS, two component sen 92.5 0.51 1.7E-05 36.5 7.8 74 116-204 56-138 (153)
8 3k2n_A Sigma-54-dependent tran 92.3 1.7 5.7E-05 34.8 11.0 131 7-203 18-158 (177)
9 3mmh_A FRMSR, methionine-R-sul 91.7 0.058 2E-06 47.0 1.7 72 116-205 77-156 (167)
10 2e4s_A CAMP and CAMP-inhibited 90.8 0.11 3.8E-06 42.2 2.4 76 116-204 85-169 (189)
11 3rfb_A Putative uncharacterize 90.1 0.18 6.2E-06 44.6 3.2 74 116-207 77-158 (171)
12 2vjw_A GAF-B, GAF family prote 89.8 0.2 6.7E-06 41.6 3.1 48 116-188 55-107 (149)
13 3ksh_A Putative uncharacterize 89.6 0.14 4.8E-06 44.8 2.2 72 116-205 76-155 (160)
14 3oov_A Methyl-accepting chemot 87.0 1.8 6.2E-05 34.0 7.0 75 120-204 72-155 (169)
15 2zmf_A CAMP and CAMP-inhibited 85.2 0.21 7.1E-06 40.3 0.5 76 116-204 85-169 (189)
16 3hcy_A Putative two-component 84.6 1.2 4.2E-05 35.0 4.8 71 118-202 51-130 (151)
17 3ibj_A CGMP-dependent 3',5'-cy 80.1 0.93 3.2E-05 46.6 3.2 77 116-205 245-331 (691)
18 1mc0_A 3',5'-cyclic nucleotide 79.6 1.4 4.8E-05 40.1 3.9 76 116-204 245-330 (368)
19 1ykd_A Adenylate cyclase; GAF 77.0 1.1 3.8E-05 41.6 2.4 60 117-189 263-331 (398)
20 2qyb_A Membrane protein, putat 76.6 1.9 6.6E-05 34.8 3.5 73 119-206 70-153 (181)
21 1mc0_A 3',5'-cyclic nucleotide 71.3 0.85 2.9E-05 41.6 0.1 70 116-200 75-155 (368)
22 3bjc_A CGMP-specific 3',5'-cyc 65.7 1.3 4.3E-05 47.3 0.0 61 116-189 225-291 (878)
23 1ykd_A Adenylate cyclase; GAF 64.6 1.5 5.2E-05 40.6 0.3 62 116-188 75-143 (398)
24 3ibj_A CGMP-dependent 3',5'-cy 57.1 5.1 0.00017 41.2 2.7 69 116-200 76-155 (691)
25 3o5y_A Sensor protein; GAF dom 54.0 15 0.00052 30.9 4.7 77 116-206 54-138 (165)
26 3bjc_A CGMP-specific 3',5'-cyc 52.6 2.9 0.0001 44.6 0.0 61 116-189 407-477 (878)
27 3p01_A Two-component response 49.1 5.8 0.0002 32.6 1.3 70 121-204 95-172 (184)
28 2k2n_A Sensor protein, SYB-CPH 47.2 15 0.00053 29.8 3.6 60 118-190 75-143 (172)
29 2lb5_A Sensor histidine kinase 45.7 17 0.00059 30.3 3.7 77 116-205 103-191 (208)
30 3l51_B Structural maintenance 32.4 12 0.00042 32.0 0.7 21 342-362 145-166 (166)
31 3a98_B Engulfment and cell mot 28.5 25 0.00084 31.9 2.1 44 3-70 14-67 (203)
32 3pe5_A Uncharacterized protein 26.4 14 0.00047 37.1 0.0 14 349-362 386-403 (403)
No 1
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=94.87 E-value=0.011 Score=51.72 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=52.4
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeCC------ceEeecccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVRE------GVVQLGAVN 189 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~~------GVVELGSte 189 (364)
.|..|+|+.|+|+.+++.+.|.+.... +| |.+. ..+++.++|||+.. |||++.+.+
T Consensus 93 ~i~~g~Gi~G~aa~~g~~v~v~Dv~~d----------------p~-~~~~-~~~~~S~l~vPi~~~~g~viGVL~l~s~~ 154 (180)
T 1f5m_A 93 MIQFGKGVCGTAASTKETQIVPDVNKY----------------PG-HIAC-DGETKSEIVVPIISNDGKTLGVIDIDCLD 154 (180)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGS----------------TT-CCCS-STTCCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred eecCCCcchhhhhhcCCEEEeCCcccC----------------cc-cccc-CcccceEEEEEEEcCCCeEEEEEEeccCC
Confidence 688899999999999999999765421 11 1222 46889999999865 999999876
Q ss_pred cc---cCChHHHHHHHHHh
Q 017877 190 KV---VEDLNYVVLLRKKF 205 (364)
Q Consensus 190 ~I---~Ed~~lV~~IK~lF 205 (364)
.- .+|..+++.+-...
T Consensus 155 ~~~F~~~d~~~L~~la~~~ 173 (180)
T 1f5m_A 155 YEGFDHVDKEFLEKLAKLI 173 (180)
T ss_dssp TTCCCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 42 34556666655443
No 2
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=94.79 E-value=0.01 Score=50.36 Aligned_cols=78 Identities=14% Similarity=0.033 Sum_probs=52.4
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.++.|+|+.|+|+.+|+++.|.+...+ . .+.+.........++.++|||+. -|||+|.+...
T Consensus 82 ~~~~~~gi~g~v~~tg~~v~i~d~~~d--~-----------~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~ 148 (180)
T 3dba_A 82 VFPLDIGIAGWVAHTKKFFNIPDVKKN--N-----------HFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLN 148 (180)
T ss_dssp EECTTSSHHHHHHHHTCCEEESCGGGC--T-----------TCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESS
T ss_pred eeeCCCCHHHHHHHhCCEEEecCCCCC--c-----------ccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCC
Confidence 578899999999999999999865421 1 12222211112357899999984 39999988754
Q ss_pred c----cCChHHHHHHHHHhh
Q 017877 191 V----VEDLNYVVLLRKKFS 206 (364)
Q Consensus 191 I----~Ed~~lV~~IK~lF~ 206 (364)
- .+|..+++.+-....
T Consensus 149 ~~~Ft~~d~~lL~~lA~~aa 168 (180)
T 3dba_A 149 ASEFSKEDEEVFKKYLNFIS 168 (180)
T ss_dssp SSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 2 356667666655443
No 3
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=94.54 E-value=0.088 Score=41.80 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=48.6
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.+..++|+.|+++.+++++++.+.... .. +....... ..|++.++|||+. -|||.+++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~-----------~~~~~~~~-~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~ 137 (171)
T 3trc_A 72 RLKFGEGLIGLVGEREEPINLADAPLH--PA-----------YKHRPELG-EEDYHGFLGIPIIEQGELLGILVIQQLES 137 (171)
T ss_dssp EEETTCHHHHHHHHHTSCEEESCGGGS--TT-----------CCCCGGGC-CCCCCEEEEEEEEETTEEEEEEEEEESSS
T ss_pred eecCCCChhhHHHhcCCeEEeCCCCCC--Cc-----------ccccccCC-cccccEEEEEeEEECCEEEEEEEEeecCC
Confidence 567788999999999999999654321 11 11111112 4789999999984 49999999764
Q ss_pred cc---CChHHHHHHHH
Q 017877 191 VV---EDLNYVVLLRK 203 (364)
Q Consensus 191 I~---Ed~~lV~~IK~ 203 (364)
-. +|.++++.+-.
T Consensus 138 ~~f~~~d~~~l~~la~ 153 (171)
T 3trc_A 138 HHFAEEEEAFCVTLAI 153 (171)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 32 34445544443
No 4
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=93.67 E-value=0.14 Score=40.85 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=47.9
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.+..|+|+.|+++.+++++++.+..... .+....... ..|++.++|||+. -|||.+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~-------------~~~~~~~~~-~~~~~s~l~vPl~~~~~~iGvl~~~~~~~ 142 (181)
T 3e0y_A 77 RIKIGDGITGSVARDGQYISLSRASQDP-------------RYRYFPELQ-EEKYNSMLSFPIGDKKEVYGVINLNTTSI 142 (181)
T ss_dssp EEETTTSSHHHHHHHCCCEEEEEECCCC-------------CC----------CEEEEEEEEEECSSCEEEEEEEEESSC
T ss_pred cccCCCCeeeehhhcCCeEEecCcccCc-------------ccccccccc-ccCcceEEEEEEEeCCeEEEEEEEeeCCC
Confidence 5677899999999999999997653210 011111112 4689999999984 48999998864
Q ss_pred c---cCChHHHHHHHHHh
Q 017877 191 V---VEDLNYVVLLRKKF 205 (364)
Q Consensus 191 I---~Ed~~lV~~IK~lF 205 (364)
- .+|.++++.+-...
T Consensus 143 ~~f~~~~~~~l~~la~~~ 160 (181)
T 3e0y_A 143 RSFHEDEIYFVSIIANLI 160 (181)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 3 34455555554433
No 5
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=93.25 E-value=0.04 Score=49.34 Aligned_cols=73 Identities=15% Similarity=0.078 Sum_probs=52.7
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.|..|+|+.|+|+.+++.+.|.+.... +| +.+. ..+.+.++|||+. -|||++.|.+.
T Consensus 88 ~i~~GeGi~G~aa~tg~~i~V~Dv~~~----------------p~-~~~~-~~~~~S~l~VPI~~~g~viGVL~i~s~~~ 149 (195)
T 1vhm_A 88 RIPVGRGVCGTAVARNQVQRIEDVHVF----------------DG-HIAC-DAASNSEIVLPLVVKNQIIGVLDIDSTVF 149 (195)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCTTTC----------------TT-CCCS-CCCCSEEEEEEEEETTEEEEEEEEEESST
T ss_pred EecCCCChHHHHHhcCCEEEECCcccC----------------cc-hhhc-CCCccEEEEEeEeECCEEEEEEEecCCCC
Confidence 678899999999999999999876421 11 1111 4578999999984 39999999765
Q ss_pred c---cCChHHHHHHHHHhh
Q 017877 191 V---VEDLNYVVLLRKKFS 206 (364)
Q Consensus 191 I---~Ed~~lV~~IK~lF~ 206 (364)
- .+|..+++.+-....
T Consensus 150 ~~F~e~d~~~L~~lA~~ia 168 (195)
T 1vhm_A 150 GRFTDEDEQGLRQLVAQLE 168 (195)
T ss_dssp TCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3 346666666655544
No 6
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=92.98 E-value=0.17 Score=39.46 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=45.3
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.+..++|+.|+++.+++++.+.+.... .. +....... ..|+++++|||+. -|||.+++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~-----------~~~~~~~~-~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~ 139 (171)
T 3ci6_A 74 SLQLSEGLVGLVGQREEIVNLENASKH--ER-----------FAYLPETG-EEIYNSFLGVPVMYRRKVMGVLVVQNKQP 139 (171)
T ss_dssp EEETTSHHHHHHHHHTSCEEESSGGGS--TT-----------C----------CCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred eeeccCCeehhhhccCceEEecCCCcC--cc-----------hhcccccc-ccccceEEEEeEEECCEEEEEEEEecCCC
Confidence 456678999999999999999754311 00 11011112 4689999999984 48999999865
Q ss_pred cc---CChHHHHHHHH
Q 017877 191 VV---EDLNYVVLLRK 203 (364)
Q Consensus 191 I~---Ed~~lV~~IK~ 203 (364)
-. +|..+++.+-.
T Consensus 140 ~~f~~~~~~~l~~la~ 155 (171)
T 3ci6_A 140 QDFSEAAESFLVTLCA 155 (171)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 32 34444444433
No 7
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=92.51 E-value=0.51 Score=36.45 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=49.0
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.+..++|+.|+++.+++++.+.+.... .. +. .+... ..|+++++|||+. -|||.+++.+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~-----------~~-~~~~~-~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~ 120 (153)
T 2w3g_A 56 HLPKGLGVIGLLIEDPKPLRLDDVSAH--PA-----------SI-GFPPY-HPPMRTFLGVPVRVRDESFGTLYLTDKTN 120 (153)
T ss_dssp SCCCSCTHHHHHHHSCSCEEESSGGGS--TT-----------CC-CCCTT-CCCCCCEEEEEEEETTEEEEEEEEEEETT
T ss_pred cCCCCCCHHHHHHhcCCcEEecCcccC--ch-----------hc-CCCCc-CCCCCeEEEeeEEECCEEEEEEEEeeCCC
Confidence 466689999999999999999764321 11 10 11112 4689999999984 49999998765
Q ss_pred ----ccCChHHHHHHHHH
Q 017877 191 ----VVEDLNYVVLLRKK 204 (364)
Q Consensus 191 ----I~Ed~~lV~~IK~l 204 (364)
-.+|.++++.+-..
T Consensus 121 ~~~f~~~~~~~l~~la~~ 138 (153)
T 2w3g_A 121 GQPFSDDDEVLVQALAAA 138 (153)
T ss_dssp SCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 23444555554433
No 8
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=92.32 E-value=1.7 Score=34.82 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=78.3
Q ss_pred chhHHHHHHHHHHHhccCCCCCceEEEEeeecCCCCCCCCCCCCCccccCCCCCCceeEEecCccccCCccchhhcCCCC
Q 017877 7 PLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEINSGD 86 (364)
Q Consensus 7 p~~l~~~LQ~~LrsLc~~~~~~WtYAVFWqisprn~ppP~w~~~g~~D~S~~~sg~~iLvWgDGycng~~~~~~E~~~~~ 86 (364)
-..+.++|+..++.+++ -.+.+++.++-+.++. ..+..|..+|......
T Consensus 18 ~~d~~~~l~~i~~~~~~--~~~~~~~~i~l~d~~~--------------------~~l~~~~~~~~~~~~~--------- 66 (177)
T 3k2n_A 18 IRDPQELFRTVTDKLRL--LFAFDSAVIITIDRER--------------------REASVFFEMLRFELPE--------- 66 (177)
T ss_dssp CCSHHHHHHHHHHHHTT--TCCCSEEEEEEEETTT--------------------TEEEEEEEECSSCCCS---------
T ss_pred ccCHHHHHHHHHHHHHH--hcCCCeEEEEEEcCCC--------------------CeEEeEEecccCCCCc---------
Confidence 45678889999999887 6678888888886432 2344453333221100
Q ss_pred CCCCCCCCCccccccCCcchHHHHhhccccccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCC-chh-hh
Q 017877 87 CPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHP-RTW-EA 164 (364)
Q Consensus 87 ~~~ss~~g~~~~~~~~~~d~EwFflMSm~sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~-Ra~-~A 164 (364)
+ .....+..+.|+.|+|+.+++++.+ +..... .. ...+ +.. ..
T Consensus 67 --------------------~----~~~~~~~~~~~~~~~v~~~~~~~~~-d~~~~~-~~---------~~~~~~~~~~~ 111 (177)
T 3k2n_A 67 --------------------Q----LRHQTRSIAGTWLEGHLDDRTVTVA-SIARDI-PS---------FGADGAPLLWT 111 (177)
T ss_dssp --------------------T----TCCSEEECTTSGGGGGTTCCSCEEE-ETTTTC-TT---------TTTTTCHHHHH
T ss_pred --------------------h----hhcccCCccccHHHHHhccCCceEe-chhhcc-cc---------cCCcchhHHHH
Confidence 0 0011456788999999999999988 432211 00 1122 111 11
Q ss_pred hhccCcceEEEeEeC-----CceEeeccccccc---CChHHHHHHHH
Q 017877 165 QFQSGIKTIALIAVR-----EGVVQLGAVNKVV---EDLNYVVLLRK 203 (364)
Q Consensus 165 QFsaGIQTIVcIPV~-----~GVVELGSte~I~---Ed~~lV~~IK~ 203 (364)
-...|++.++|||+. -|||.+++.+.-. +|..+++.+-.
T Consensus 112 ~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~~~f~~~d~~ll~~lA~ 158 (177)
T 3k2n_A 112 LHELGMRQIVLSPLRSGGRVIGFLSFVSAEEKLWSDGDKSLLSGVSS 158 (177)
T ss_dssp HHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred HHHcCceEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 125799999999984 5999999866533 34445544433
No 9
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=91.74 E-value=0.058 Score=46.98 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=51.6
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.|..|+|+.|+|+.+|+.+-|.+.... ..| .+. ..+++..+|||+. =|||++.|.+.
T Consensus 77 ~i~~geGi~G~v~~~g~~~~v~Dv~~~--p~~---------------~~~-~~~~~S~i~vPi~~~g~viGVL~i~s~~~ 138 (167)
T 3mmh_A 77 RIPFGRGVCGQAWAKGGTVVVGDVDAH--PDH---------------IAC-SSLSRSEIVVPLFSDGRCIGVLDADSEHL 138 (167)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGS--TTC---------------CCS-STTCCEEEEEEEEETTEEEEEEEEEESST
T ss_pred EeccCCChHHHHHhCCcEEEECCcccC--cch---------------hhc-CccCCeEEEEEeccCCEEEEEEEEecCCC
Confidence 788999999999999999999876421 111 111 3578899999984 49999998654
Q ss_pred c---cCChHHHHHHHHHh
Q 017877 191 V---VEDLNYVVLLRKKF 205 (364)
Q Consensus 191 I---~Ed~~lV~~IK~lF 205 (364)
- .+|..+++.+-...
T Consensus 139 ~~F~~~d~~~L~~lA~~l 156 (167)
T 3mmh_A 139 AQFDETDALYLGELAKIL 156 (167)
T ss_dssp TCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 3 35566666665544
No 10
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=90.83 E-value=0.11 Score=42.22 Aligned_cols=76 Identities=18% Similarity=0.114 Sum_probs=51.8
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.++.|+|+.|+|+.+++++.+.+.... ..+.+........++++++|||+. -|||.|.+.+.
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~-------------~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~ 151 (189)
T 2e4s_A 85 RFSIEKGIAGQVARTGEVLNIPDAYAD-------------PRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKIS 151 (189)
T ss_dssp EEETTSHHHHHHHHHCCCEEESCGGGS-------------TTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETT
T ss_pred EeeCCCcHHHHHHHhCCEEEecCCCcC-------------cccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCC
Confidence 567789999999999999999754321 112222222224688999999983 49999998865
Q ss_pred c----cCChHHHHHHHHH
Q 017877 191 V----VEDLNYVVLLRKK 204 (364)
Q Consensus 191 I----~Ed~~lV~~IK~l 204 (364)
- .+|..+++.+-..
T Consensus 152 ~~~f~~~d~~ll~~la~~ 169 (189)
T 2e4s_A 152 GSAFSKTDENNFKMFAVF 169 (189)
T ss_dssp SSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 4 3556666655443
No 11
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=90.06 E-value=0.18 Score=44.61 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=53.3
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.+..|+|+.|+|+.+++.+=|.+.... ..|+ +. ..+.+..+|||+. =|||.+.|.+.
T Consensus 77 ri~~GeGv~G~va~tg~~i~V~Dv~~~--p~~i---------------~~-~~~~~Sei~VPI~~~g~viGVL~i~s~~~ 138 (171)
T 3rfb_A 77 RIALGKGVCGEAAHFQETVIVGDVTTY--LNYI---------------SC-DSLAKSEIVVPMMKNGQLLGVLDLDSSEI 138 (171)
T ss_dssp EEETTSHHHHHHHHTTSCEEESCTTSC--SSCC---------------CS-CTTCCEEEEEEEEETTEEEEEEEEEESST
T ss_pred EeeCCcCHHHHHHhhCCEEEECCcccC--cccc---------------cc-CcccCceEEEEEEECCEEEEEEEEecCCC
Confidence 789999999999999999999876531 1111 11 3457899999983 49999999654
Q ss_pred c---cCChHHHHHHHHHhhc
Q 017877 191 V---VEDLNYVVLLRKKFSY 207 (364)
Q Consensus 191 I---~Ed~~lV~~IK~lF~~ 207 (364)
- .+|..+++.+-.....
T Consensus 139 ~~F~e~D~~~L~~lA~~la~ 158 (171)
T 3rfb_A 139 EDYDAMDRDYLEQFVAILLE 158 (171)
T ss_dssp TCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 3 4666677776665543
No 12
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=89.78 E-value=0.2 Score=41.60 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=39.5
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAV 188 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSt 188 (364)
.|..|+|+.|+|+.+|+++++.+... +. |++.++|||+. -|||.|.+.
T Consensus 55 ~~~~~~g~~g~v~~~g~~v~v~d~~~--------------d~-----------~~~s~l~vPL~~~~~~~GvL~l~~~ 107 (149)
T 2vjw_A 55 AIPVQDNAIGQAFRDRAPRRLDVLDG--------------PG-----------LGGPALVLPLRATDTVAGVLVAVQG 107 (149)
T ss_dssp EEESSSSHHHHHHHHCCCEEESCCCT--------------TS-----------CEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccCCCCCHHHHHhhcCceEEecCccc--------------CC-----------CCCeEEEEEEccCCeEEEEEEEeeC
Confidence 57779999999999999999976531 11 78999999984 399999887
No 13
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=89.65 E-value=0.14 Score=44.76 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=51.3
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.+..|+|+.|+|+.+++.+-|.+... ++| +.+. ..+.+..+|||+. =|||.+.|.+.
T Consensus 76 ri~~GeGv~G~aa~~~~~i~V~Dv~~----------------~p~-~i~~-~~~~~Sei~VPI~~~g~viGVL~i~s~~~ 137 (160)
T 3ksh_A 76 HIPIGKGVCGTAVSERRTQVVADVHQ----------------FKG-HIAC-DANSKSEIVVPIFKDDKIIGVLDIDAPIT 137 (160)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGG----------------STT-CCGG-GTTCSEEEEEEEEETTEEEEEEEEEESSS
T ss_pred EeeCCCCHHHHHHhhCCEEEECCccc----------------Ccc-cccc-CcccCceEEEEEEECCEEEEEEEEecCCC
Confidence 78999999999999999999987642 111 1122 3567899999983 49999999654
Q ss_pred c---cCChHHHHHHHHHh
Q 017877 191 V---VEDLNYVVLLRKKF 205 (364)
Q Consensus 191 I---~Ed~~lV~~IK~lF 205 (364)
- .+|..+++.+-...
T Consensus 138 ~~F~e~D~~~L~~lA~~l 155 (160)
T 3ksh_A 138 DRFDDNDKEHLEAIVKII 155 (160)
T ss_dssp SCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 3 35566666665443
No 14
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=86.97 E-value=1.8 Score=33.97 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=46.7
Q ss_pred CCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc----
Q 017877 120 GEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK---- 190 (364)
Q Consensus 120 GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~---- 190 (364)
|.|+.|+++.+++++++.+.... ..+. ... .+.... . ..|++.++|||+. -|||.+++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~d~~~~--~~~~-----~~~-~~~~~~-~-~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~~f 141 (169)
T 3oov_A 72 RGGVITKCFTDRQVYMIDDVSAY--PTDF-----RLQ-SPYDAI-R-ALRSKSFVICPIVVKGEAIGVFAVDNRSSRRSL 141 (169)
T ss_dssp GGHHHHHHHHHTCCEEESCGGGS--CGGG-----SCC-TTGGGC-G-GGCCSSEEEEEEEETTEEEEEEEEECTTSSSCC
T ss_pred ccchHHHHHhcCCCEEeccccch--hhhh-----hcc-ccHHHH-H-hcCcCcEEEEEEEeCCcEEEEEEEEccccCCCC
Confidence 68999999999999999755321 1110 000 001111 2 4689999999984 49999998643
Q ss_pred ccCChHHHHHHHHH
Q 017877 191 VVEDLNYVVLLRKK 204 (364)
Q Consensus 191 I~Ed~~lV~~IK~l 204 (364)
-.+|.++++.+-..
T Consensus 142 ~~~d~~~l~~~a~~ 155 (169)
T 3oov_A 142 NDTDVDTIKLFADQ 155 (169)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 23455565555443
No 15
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=85.16 E-value=0.21 Score=40.28 Aligned_cols=76 Identities=18% Similarity=0.124 Sum_probs=49.3
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.++.++|+.|+|+.+++++.+.+.... ..+.+........+++.++|||+. -|||.+.....
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~-------------~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~ 151 (189)
T 2zmf_A 85 RFSIEKGIAGQVARTGEVLNIPDAYAD-------------PRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKIS 151 (189)
T ss_dssp EEETTSHHHHHHHHHCCCEEESCGGGS-------------TTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETT
T ss_pred ccCCCccHHHHHHHhCCeEEEeccccc-------------ccccccchhhcccccceEEEeeecccCceeeEEEEEEcCC
Confidence 577889999999999999999765321 112222222225689999999973 37888864433
Q ss_pred ----ccCChHHHHHHHHH
Q 017877 191 ----VVEDLNYVVLLRKK 204 (364)
Q Consensus 191 ----I~Ed~~lV~~IK~l 204 (364)
-.+|.++++.+-..
T Consensus 152 ~~~f~~~d~~ll~~lA~q 169 (189)
T 2zmf_A 152 GSAFSKTDENNFKMFAVF 169 (189)
T ss_dssp SSSCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 23456666655433
No 16
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=84.60 E-value=1.2 Score=34.98 Aligned_cols=71 Identities=7% Similarity=-0.000 Sum_probs=42.5
Q ss_pred cCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchh-hhhhccCcceEEEeEeC-----CceEeecccccc
Q 017877 118 NYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTW-EAQFQSGIKTIALIAVR-----EGVVQLGAVNKV 191 (364)
Q Consensus 118 ~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~-~AQFsaGIQTIVcIPV~-----~GVVELGSte~I 191 (364)
..|+|+.|+++.++++++|.+.... ..+.... .+. ..||+.++|||+. -|||.+.+.+.-
T Consensus 51 ~~~~~~~~~~~~~~~~~~i~d~~~~-------------~~~~~~~~~~~-~~g~~s~~~vPl~~~~~~iGvl~~~~~~~~ 116 (151)
T 3hcy_A 51 VDGHSPWITGANEPEPIFVENVDDA-------------EFSRELKESIV-GEGIAALGFFPLVTEGRLIGKFMTYYDRPH 116 (151)
T ss_dssp TCBCCSCC---CCCCCEEESCGGGS-------------CCCHHHHHHHH-HHTCCEEEEEEEESSSSEEEEEEEEESSCC
T ss_pred ccCCCchhhhhhcCCcEEEeChhhC-------------cccchhHHHHH-hcCchheEEeceEECCEEEEEEEEecCCCC
Confidence 3578999999999999999765321 0111110 122 4799999999984 488999876543
Q ss_pred c---CChHHHHHHH
Q 017877 192 V---EDLNYVVLLR 202 (364)
Q Consensus 192 ~---Ed~~lV~~IK 202 (364)
. +|..+++.+-
T Consensus 117 ~f~~~~~~ll~~~a 130 (151)
T 3hcy_A 117 RFADSEIGMALTIA 130 (151)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 3 3344444443
No 17
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=80.13 E-value=0.93 Score=46.62 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=49.5
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-C-----ceEeecccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-E-----GVVQLGAVN 189 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-~-----GVVELGSte 189 (364)
.++.|+|+.|+|+.+|+++.|.+.... ..+.+........+++.++|||+. + |||.+.+..
T Consensus 245 ~~~~~~gi~g~v~~~g~~v~i~d~~~d-------------~~~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~ 311 (691)
T 3ibj_A 245 RIPADQGIAGHVATTGQILNIPDAYAH-------------PLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKI 311 (691)
T ss_dssp EEETTSHHHHHHHHHCSCEEESCSTTS-------------TTC------CCSCCCCCEEEEECCCSSSCCCEEEEEEEES
T ss_pred eccCCCCHHHHHHHhCCEEEecCcccC-------------ccccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECC
Confidence 456788999999999999999765422 112222222212458999999973 2 899998765
Q ss_pred cc----cCChHHHHHHHHHh
Q 017877 190 KV----VEDLNYVVLLRKKF 205 (364)
Q Consensus 190 ~I----~Ed~~lV~~IK~lF 205 (364)
.- .+|..+++.+-...
T Consensus 312 ~~~~f~~~d~~ll~~lA~~~ 331 (691)
T 3ibj_A 312 NGPWFSKFDEDLATAFSIYC 331 (691)
T ss_dssp SSSSCCTTTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 43 56777776654443
No 18
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=79.61 E-value=1.4 Score=40.13 Aligned_cols=76 Identities=16% Similarity=0.057 Sum_probs=48.0
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-C-----ceEeecccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-E-----GVVQLGAVN 189 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-~-----GVVELGSte 189 (364)
.++.|+|+.|+++.++++++|.+.... ..+.+.........++.++|||+. . |||.+++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~d~~~~-------------~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 311 (368)
T 1mc0_A 245 RIPADQGIAGHVATTGQILNIPDAYAH-------------PLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKI 311 (368)
T ss_dssp EECTTSHHHHHHHHHCCCEEESCSTTC-------------TTCCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEET
T ss_pred eecCCCceeeeehhhCCEEEecCcccC-------------cccchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECC
Confidence 345678899999999999999765421 112222222111235899999984 3 899999876
Q ss_pred cc----cCChHHHHHHHHH
Q 017877 190 KV----VEDLNYVVLLRKK 204 (364)
Q Consensus 190 ~I----~Ed~~lV~~IK~l 204 (364)
.- .+|.++++.+-..
T Consensus 312 ~~~~f~~~d~~ll~~la~~ 330 (368)
T 1mc0_A 312 NGPWFSKFDEDLATAFSIY 330 (368)
T ss_dssp TSSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 53 3555666655443
No 19
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=77.03 E-value=1.1 Score=41.59 Aligned_cols=60 Identities=22% Similarity=0.152 Sum_probs=39.3
Q ss_pred ccCCCCeeeeEeeCCCeeeee-CCCCchhhhhhhhcccCCCCCCch--hhhhhccCcceEEEeEeCC------ceEeecc
Q 017877 117 YNYGEGLIGKVAADHSHKWIY-KEPNDQEINFLSAWHNAADSHPRT--WEAQFQSGIKTIALIAVRE------GVVQLGA 187 (364)
Q Consensus 117 F~~GeGLpGKaaasg~h~WI~-~~~~~~e~~f~s~w~~s~d~~~Ra--~~AQFsaGIQTIVcIPV~~------GVVELGS 187 (364)
++.|+|+.|+|+.+|+.+.|. +.... . .+... +......+++.++|||+.. |||.+.+
T Consensus 263 ~~~~~~~~~~v~~~~~~~~i~~d~~~~--~-----------~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~ 329 (398)
T 1ykd_A 263 VPIGKGFAGIVAASGQKLNIPFDLYDH--P-----------DSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVN 329 (398)
T ss_dssp EETTSHHHHHHHHHCCCEEECSCGGGS--T-----------TCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEE
T ss_pred ccCCCchhhHHhccCCeEEeccccccC--c-----------ccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEe
Confidence 556788899999999999987 43211 0 11111 2121123477899999863 9999988
Q ss_pred cc
Q 017877 188 VN 189 (364)
Q Consensus 188 te 189 (364)
.+
T Consensus 330 ~~ 331 (398)
T 1ykd_A 330 KK 331 (398)
T ss_dssp EC
T ss_pred cC
Confidence 76
No 20
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=76.56 E-value=1.9 Score=34.79 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=47.6
Q ss_pred CCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchh-hhhhccCcceEEEeEeC------CceEeecc-ccc
Q 017877 119 YGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTW-EAQFQSGIKTIALIAVR------EGVVQLGA-VNK 190 (364)
Q Consensus 119 ~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~-~AQFsaGIQTIVcIPV~------~GVVELGS-te~ 190 (364)
.|+|+.|+++.+++++.+.+.... ..++.. ... ..|++.++|||+. -|||.+.+ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~~v~d~~~~--------------~~~~~~~~~~-~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~ 134 (181)
T 2qyb_A 70 EIETYIGEAFLSNRLQFVNDTQYM--------------TKPLTRELMQ-KEGIKSFAHIPISRKGEPPFGILSVFSRTIV 134 (181)
T ss_dssp CTTSHHHHHHHHTSCEEESCGGGC--------------SCHHHHHHHH-HTTCCEEEEEEECCTTSCCCEEEEEEESSCS
T ss_pred CCCCchhhhhhcCCCEEecChhcC--------------CchhhHHHHH-hcCcceEEEEEEEeCCCeEEEEEEEecCCCC
Confidence 378999999999999998654211 111111 112 4689999999983 38999998 544
Q ss_pred c---cCChHHHHHHHHHhh
Q 017877 191 V---VEDLNYVVLLRKKFS 206 (364)
Q Consensus 191 I---~Ed~~lV~~IK~lF~ 206 (364)
- .+|..++..+-....
T Consensus 135 ~~f~~~d~~lL~~la~~~a 153 (181)
T 2qyb_A 135 GLFNEPFLNLLESLAGQLA 153 (181)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 2 345566666655544
No 21
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=71.29 E-value=0.85 Score=41.57 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=46.0
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-C------ceEeeccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-E------GVVQLGAV 188 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-~------GVVELGSt 188 (364)
.++.|+|+.|+|+.++++++|.+.... . . +.+......++++++|||+. + |||.+.+.
T Consensus 75 ~~~~~~g~~g~~~~~~~~~~i~d~~~~--~------------~-~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~ 139 (368)
T 1mc0_A 75 SFPLTMGRLGQVVEDKQCIQLKDLTSD--D------------V-QQLQNMLGCELQAMLCVPVISRATDQVVALACAFNK 139 (368)
T ss_dssp EEESSSSSHHHHHHHCCCEEGGGSCHH--H------------H-HHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEE
T ss_pred eeccccCHHHHHHhcCCeEEecccccc--c------------c-cccccccCcccceEEEEEeecCCCCcEEEEEEeecC
Confidence 467899999999999999999765321 1 0 11112223568999999983 3 89998765
Q ss_pred cc----ccCChHHHHH
Q 017877 189 NK----VVEDLNYVVL 200 (364)
Q Consensus 189 e~----I~Ed~~lV~~ 200 (364)
.. -.+|..+++.
T Consensus 140 ~~~~~f~~~d~~~l~~ 155 (368)
T 1mc0_A 140 LGGDFFTDEDEHVIQH 155 (368)
T ss_dssp SSCSSCCSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH
Confidence 43 2344455543
No 22
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=65.75 E-value=1.3 Score=47.34 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=0.0
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeCC------ceEeecccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVRE------GVVQLGAVN 189 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~~------GVVELGSte 189 (364)
.++.|+|+.|+|+.+++++.|.+.... ..| .+.....-..++++++|||+.. |||++.+..
T Consensus 225 ~~p~~~gi~g~v~~~g~pv~I~D~~~d--p~f-----------~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~ 291 (878)
T 3bjc_A 225 RLEWNKGIVGHVAALGEPLNIKDAYED--PRF-----------NAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKK 291 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeCCccHHHHHHhcCceEEeCCcccC--ccc-----------ccccccccCCccceEEEEeeEcCCCCEEEEEEEEecC
Confidence 578899999999999999999865421 111 1111111124588999999853 899988654
No 23
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=64.56 E-value=1.5 Score=40.64 Aligned_cols=62 Identities=19% Similarity=0.045 Sum_probs=41.1
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchh-hhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC------CceEeeccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQE-INFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR------EGVVQLGAV 188 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e-~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~------~GVVELGSt 188 (364)
.++.|+|+.|+|+.+++.+.|.+...... ..| .+........++++++|||+. -|||++.+.
T Consensus 75 ~~~~~~g~~g~v~~~~~~v~i~d~~~~~~~~~~-----------~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 75 RIPADKGIAGEVATFKQVVNIPFDFYHDPRSIF-----------AQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp EEETTSHHHHHHHHHCCCEEECSCGGGSGGGHH-----------HHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred ecCCCCchhhhhhccCcEEeccchhcccchhhc-----------ccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 45678999999999999999976532100 111 111221213578899999984 279999876
No 24
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=57.10 E-value=5.1 Score=41.15 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=44.6
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-C------ceEeeccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-E------GVVQLGAV 188 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-~------GVVELGSt 188 (364)
.++.| |+.|+|+.+++++.|.+... +..+ .........+++++|||+. + |||.+...
T Consensus 76 ~~p~~-Gi~g~v~~~~~pv~i~d~~~--~~~~-------------~~~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~ 139 (691)
T 3ibj_A 76 SFPLT-GCLGQVVEDKKSIQLKDLTS--EDVQ-------------QLQSMLGCELQAMLCVPVISRATDQVVALACAFNK 139 (691)
T ss_dssp EEECC-SSSHHHHHHCCCEEGGGSCH--HHHH-------------HHHHHHTSCCSCEEEEEEECSSSCSEEEEEEEESB
T ss_pred ecCCc-cHHHHHHHHCCeEEeccchh--cccc-------------ccccccCCccceEEEEEeEcCCCCcEEEEEEEEcC
Confidence 56789 99999999999999976542 1111 1111112458899999985 4 79997754
Q ss_pred cc----ccCChHHHHH
Q 017877 189 NK----VVEDLNYVVL 200 (364)
Q Consensus 189 e~----I~Ed~~lV~~ 200 (364)
.. -.+|..+++.
T Consensus 140 ~~~~~ft~~d~~lL~~ 155 (691)
T 3ibj_A 140 LEGDLFTDEDEHVIQH 155 (691)
T ss_dssp SSSCCCCTTHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH
Confidence 32 2345555554
No 25
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=53.95 E-value=15 Score=30.89 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=47.5
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK 190 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~ 190 (364)
.++.+.++.|+|+.+++.+=+..... . ..+....... ..|+++++|||+. -|||-|++.+.
T Consensus 54 ~ip~~~s~~~~v~~~~~~~v~~~~~~--~-----------~~~~~~~~~~-~~~~~S~l~vPL~~~~~~iGvl~l~~~~~ 119 (165)
T 3o5y_A 54 TIPKEQSLYWSALDQRQTIFRSLTDT--Q-----------DNFYEKQYLA-ILDLKSILVIPIYSKNKRVGVLSIGRKQQ 119 (165)
T ss_dssp EECSTTCHHHHHHHHTSCEEEESCCT--T-----------CCCTTHHHHH-TTTCCEEEEEEEECSSCEEEEEEEEESSC
T ss_pred ccCCccCHHHHHHHhCCeEEEcCccc--c-----------cccccchHHH-hhCCCEEEEeCeeECCEEEEEEEEEeCCC
Confidence 45566788899999998874322211 1 1121112223 5799999999973 59999999765
Q ss_pred cc---CChHHHHHHHHHhh
Q 017877 191 VV---EDLNYVVLLRKKFS 206 (364)
Q Consensus 191 I~---Ed~~lV~~IK~lF~ 206 (364)
-. +|..+++.+-....
T Consensus 120 ~~f~~~d~~~l~~la~~~a 138 (165)
T 3o5y_A 120 IDWSLDDLAFLEQLTDHLA 138 (165)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 43 45555555554443
No 26
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=52.63 E-value=2.9 Score=44.57 Aligned_cols=61 Identities=18% Similarity=0.058 Sum_probs=0.0
Q ss_pred cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhc---cCcceEEEeEeC-C------ceEee
Q 017877 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQ---SGIKTIALIAVR-E------GVVQL 185 (364)
Q Consensus 116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFs---aGIQTIVcIPV~-~------GVVEL 185 (364)
.++.|+|+.|+|+.+|+.+.|.+.... . .+.+.....-. .+++.++|||+. . |||+|
T Consensus 407 ~~p~~~gi~g~v~~~g~~v~i~D~~~d--~-----------r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l 473 (878)
T 3bjc_A 407 ANKINYMYAQYVKNTMEPLNIPDVSKD--K-----------RFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQL 473 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhhHHHHHhhcCCeeeecCcccc--c-----------ccccccccccCccccccceEEEEEEecCCCCcEEEEEEE
Confidence 467789999999999999999765421 1 11222221101 358999999984 2 89999
Q ss_pred cccc
Q 017877 186 GAVN 189 (364)
Q Consensus 186 GSte 189 (364)
.+..
T Consensus 474 ~~~~ 477 (878)
T 3bjc_A 474 VNKM 477 (878)
T ss_dssp ----
T ss_pred EEcC
Confidence 7654
No 27
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=49.10 E-value=5.8 Score=32.58 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=44.3
Q ss_pred CCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeecccccc---c
Q 017877 121 EGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNKV---V 192 (364)
Q Consensus 121 eGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~I---~ 192 (364)
.|+.|+++.+++++.|.+.... ..|. .+.... ..||+.++|||+. -|||.+.+...- .
T Consensus 95 ~~~~~~~~~~~~~~~i~d~~~~--~~~~----------~~~~~~--~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~ 160 (184)
T 3p01_A 95 DPLTNEAIATGQIQVAANIAKD--PKLA----------SISQYQ--DNGIQSHVVIPITYRNEMLGVLSLQWQQPISLRE 160 (184)
T ss_dssp CHHHHHHHHHCSCEEESCGGGC--HHHH----------TCHHHH--HHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCH
T ss_pred CcHHHHHHhhCCeEEEeccccC--cccc----------chhHHH--HhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCH
Confidence 6788999999999998764322 1121 122221 3589999999984 599999665433 2
Q ss_pred CChHHHHHHHHH
Q 017877 193 EDLNYVVLLRKK 204 (364)
Q Consensus 193 Ed~~lV~~IK~l 204 (364)
+|.+|++.|-..
T Consensus 161 ~d~~ll~~lA~q 172 (184)
T 3p01_A 161 DELTLIHLSAQL 172 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 28
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=47.17 E-value=15 Score=29.80 Aligned_cols=60 Identities=5% Similarity=-0.044 Sum_probs=39.4
Q ss_pred cCCCCeeeeE----eeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccc
Q 017877 118 NYGEGLIGKV----AADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAV 188 (364)
Q Consensus 118 ~~GeGLpGKa----aasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSt 188 (364)
...+|+.|.+ +.+++++.+.+.... +...+.+.... ..|++.++|||+. -|||.+-+.
T Consensus 75 d~~~~~~g~v~~~~~~~~~~~~i~d~~~~-----------~~~~~~~~~~~--~~~~~s~l~vPi~~~~~l~G~l~~~~~ 141 (172)
T 2k2n_A 75 DVEAQSRSISQPESWGLSARVPLGEPLQR-----------PVDPCHVHYLK--SMGVASSLVVPLMHHQELWGLLVSHHA 141 (172)
T ss_dssp CGGGCCCCCSCCCSCCCSSCCCCCSSSSC-----------CCCHHHHHHHH--TTTCSEEEECCCSCSSCCCEEEEEEEC
T ss_pred eccccccccccccccccCCceeccchhhc-----------CCCHHHHHHHH--hcCCeEEEEEEEEECCEEEEEEEEEeC
Confidence 3446777775 889999988765321 00111223332 4799999999984 599999887
Q ss_pred cc
Q 017877 189 NK 190 (364)
Q Consensus 189 e~ 190 (364)
+.
T Consensus 142 ~~ 143 (172)
T 2k2n_A 142 EP 143 (172)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 29
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=45.74 E-value=17 Score=30.30 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=46.8
Q ss_pred cccCCCCeeee----EeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeec
Q 017877 116 IYNYGEGLIGK----VAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLG 186 (364)
Q Consensus 116 sF~~GeGLpGK----aaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELG 186 (364)
+...++|..|. ++.+|+++-+.+.... ....+.+..+. ..|++.++|||+. -|||.+.
T Consensus 103 i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~-----------~~~~~~~~~l~--~~~~~S~l~vPi~~~~~l~GvL~~~ 169 (208)
T 2lb5_A 103 IVDVEAQSRSISQPESWGLSARVPLGEPLQR-----------PVDPCHVHYLK--SMGVASSLVVPLMHHQELWGLLVSH 169 (208)
T ss_dssp ECCGGGCCCCCCCSSCCCCCSCCCCCSCSSC-----------CCCHHHHHHHH--HTTCSEEEEEEEEETTEEEEEEEEE
T ss_pred Eeccccccccccccccccccccccccchhhc-----------cCCHHHHHHHH--hcCCcEEEEEEEEECCEeEEEEEEe
Confidence 34455777776 7889998877654321 00112233333 4799999999983 4999998
Q ss_pred cccccc---CChHHHHHHHHHh
Q 017877 187 AVNKVV---EDLNYVVLLRKKF 205 (364)
Q Consensus 187 Ste~I~---Ed~~lV~~IK~lF 205 (364)
+.+.-. +|.++++.|-..+
T Consensus 170 ~~~~~~~~~~e~~ll~~la~~~ 191 (208)
T 2lb5_A 170 HAEPRPYSQEELQVVQLLADQV 191 (208)
T ss_dssp ESCCCCCCHHHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHHHH
Confidence 875432 3445555554443
No 30
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=32.36 E-value=12 Score=32.04 Aligned_cols=21 Identities=48% Similarity=0.784 Sum_probs=15.9
Q ss_pred CCCcccccCCCC-ccccccccC
Q 017877 342 DRDVGECSSSMS-GYQHHFHHH 362 (364)
Q Consensus 342 ~~~~~~~~~~~~-~~~~~~~~~ 362 (364)
+-|+-+.+.+|+ |..||.|||
T Consensus 145 dGdli~~~G~~tGG~~~~~~~~ 166 (166)
T 3l51_B 145 QGQIIEQSGTMSGGLEHHHHHH 166 (166)
T ss_dssp TSCEECTTCCEEECCGGGTTCC
T ss_pred CCEEEeCCEEEECCCcccccCC
Confidence 456667788999 888887775
No 31
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=28.47 E-value=25 Score=31.87 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=32.9
Q ss_pred CCCCchhHHHHHHHHHHHhccCCCCCceEE----------EEeeecCCCCCCCCCCCCCccccCCCCCCceeEEecCc
Q 017877 3 EHLNPLAMTHLLQHTLRSLCIHENSQWVYA----------VFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDG 70 (364)
Q Consensus 3 ~~~~p~~l~~~LQ~~LrsLc~~~~~~WtYA----------VFWqisprn~ppP~w~~~g~~D~S~~~sg~~iLvWgDG 70 (364)
|.|.|-.++..=||||+-|++++ |-+. .|+++++. ...|.|+|.
T Consensus 14 e~l~~e~~e~VkeQRi~~L~~G~---~F~k~~~~r~~~k~~f~rLs~n---------------------~k~L~y~d~ 67 (203)
T 3a98_B 14 EKIQPEILELIKQQRLNRLVEGT---CFRKLNARRRQDKFWYCRLSPN---------------------HKVLHYGDL 67 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCE---EEECSSCCTTCCSEEEEEECTT---------------------SSEEEEEEC
T ss_pred HHHhHHHHHHHHHHHHHHHHCCC---eEeccCCccccCceEEEEECCC---------------------CceEEEccc
Confidence 45667778888999999999854 5332 48888754 369999993
No 32
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.38A {Clostridium leptum}
Probab=26.39 E-value=14 Score=37.09 Aligned_cols=14 Identities=79% Similarity=1.369 Sum_probs=0.0
Q ss_pred cCCCCcc----ccccccC
Q 017877 349 SSSMSGY----QHHFHHH 362 (364)
Q Consensus 349 ~~~~~~~----~~~~~~~ 362 (364)
|||++|| .||.|||
T Consensus 386 ~~~~~~~~~~~~~~~~~~ 403 (403)
T 3pe5_A 386 SSSLSGYSEDLEHHHHHH 403 (403)
T ss_dssp ------------------
T ss_pred cccccccchhhhhhccCC
Confidence 6789999 5665654
Done!