BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017879
         (364 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
           Protein
          Length = 98

 Score = 32.3 bits (72), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 22/76 (28%)

Query: 37  SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYY 96
           S  E P + +   +  TGFCA    C + H               G+FP       C+ Y
Sbjct: 5   SSGELPKKRELCKFYITGFCARAENCPYMH---------------GDFP-------CKLY 42

Query: 97  MRTGTCKYGASCKYHH 112
             TG C  G  C + H
Sbjct: 43  HTTGNCINGDDCMFSH 58


>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
           Serine-(Thiol)-Lyase C
 pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
           Serine-(Thiol)-Lyase C
          Length = 430

 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 1   MERHGR-VSEGSQSDPSPEWTAPGTETGPEGLGVG 34
           M+R  R  ++GS+ DPS    A   ETGP+GL + 
Sbjct: 80  MKRQSRSFADGSERDPSVVCEAVKRETGPDGLNIA 114


>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
           Nup475TTPTIS11
          Length = 77

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 18/71 (25%)

Query: 47  CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQP-----VCQYYMRTGT 101
           C  Y  +G C YG++C+F H             G GE  +    P     +C  +   G 
Sbjct: 15  CRTYSESGRCRYGAKCQFAH-------------GLGELRQANRHPKYKTELCHKFKLQGR 61

Query: 102 CKYGASCKYHH 112
           C YG+ C + H
Sbjct: 62  CPYGSRCHFIH 72



 Score = 28.1 bits (61), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 87  RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLN-YYGYPLRPGEKECSYYMKT 145
           R    +C+ Y  +G C+YGA C++ H   G G +   + +  Y   L      C  +   
Sbjct: 9   RYKTELCRTYSESGRCRYGAKCQFAH---GLGELRQANRHPKYKTEL------CHKFKLQ 59

Query: 146 RQCKFGATCKFHH 158
            +C +G+ C F H
Sbjct: 60  GRCPYGSRCHFIH 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,074,559
Number of Sequences: 62578
Number of extensions: 428569
Number of successful extensions: 640
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 19
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)