BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017879
(364 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis
thaliana GN=At5g18550 PE=2 SV=1
Length = 465
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 221/362 (61%), Positives = 263/362 (72%), Gaps = 30/362 (8%)
Query: 1 MERHGRVSEG-SQSDPSPEWTAPGTETGPEG---------LGVGAESYPERPDEADCIHY 50
MER+G E S+SDPS EW+A GTETG E G G E++PERPDE DCI+Y
Sbjct: 1 MERYGGAGEDESRSDPSHEWSAQGTETGIEASMWRLGLRGGGGGGETFPERPDEPDCIYY 60
Query: 51 VRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKY 110
+RTG C YGSRCRFNHPR+R V+G R GEFPER+GQPVCQ++MRTGTCK+GASCKY
Sbjct: 61 LRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKY 120
Query: 111 HHPRQGAG--SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPT 168
HHPRQG G SV+ VSLNY G+PLRPGEKECSY+M+T QCKFG+TC++HHP P GV AP+
Sbjct: 121 HHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPS 180
Query: 169 PSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGP--YGPVLV 226
Q++A PT +YP LQS +VPS+QQYGVV+ARP LL GSYVQ P YG +++
Sbjct: 181 QQQQQQLSAGPT------MYPSLQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVL 234
Query: 227 SPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSV 286
P M GW+PY S++ + SP GTQ S+G+SS+YGIT LS SAPA YQS PSS
Sbjct: 235 PPGMVPYSGWNPYQASVSAMPSP--GTQPSMGTSSVYGITPLSPSAPA----YQSGPSST 288
Query: 287 GPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPL 346
G S KE FP+RP Q ECQY+M+TGDCKFG+SCRFHHP E P+ TLS GLPL
Sbjct: 289 G---VSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPL 344
Query: 347 RP 348
RP
Sbjct: 345 RP 346
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FP+R QP CQY+MRTG CK+G SC++HHP + A S +L++ G PLRPG C+++
Sbjct: 297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAA-SPEASTLSHIGLPLRPGAVPCTHFA 355
Query: 144 KTRQCKFGATCKFHH 158
+ CKFG CKF H
Sbjct: 356 QHGICKFGPACKFDH 370
>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis
thaliana GN=At3g06410 PE=2 SV=2
Length = 462
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/364 (59%), Positives = 260/364 (71%), Gaps = 26/364 (7%)
Query: 1 MERHGR-VSEGSQSDPSPEWTAPGTETGPEG----LGVGA--------ESYPERPDEADC 47
MER+GR EGS+SDPS EWT+ G ET E LG+ ESYPERPDE DC
Sbjct: 1 MERYGRPGEEGSRSDPSLEWTSHGGETAVEAPMWRLGLSGGGGGGGGGESYPERPDEPDC 60
Query: 48 IHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGAS 107
I+Y+RTG C YGSRCRFNHPRDRG+V+G R G PER+G PVCQ++MRTGTCK+GAS
Sbjct: 61 IYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFMRTGTCKFGAS 120
Query: 108 CKYHHPRQ--GAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVP 165
CKYHHPRQ G GSV+ VSL+Y GYPLRPGEKECSYY++T QCKFG TC+F+HP P V
Sbjct: 121 CKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQ 180
Query: 166 APTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYG-PV 224
P P Q +YP LQS S+PS+QQYG+V+ RP L GSY+Q PYG P+
Sbjct: 181 GPPQQPQQQQPQ--PQPQLQTIYPTLQSQSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPM 238
Query: 225 LVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPS 284
++ P M GW+PY SL+ + SP GTQ S+GSSSIYG+T LS SA AYTGTYQS+PS
Sbjct: 239 VLPPGMVPYSGWNPYQASLSAMPSP--GTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPS 296
Query: 285 SVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGL 344
S+S+ KE FP+RP Q ECQY+M+TGDCKFGSSCR+HHP + + PK + LS GL
Sbjct: 297 ----SNSTSKE--FPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGL 350
Query: 345 PLRP 348
PLRP
Sbjct: 351 PLRP 354
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 83 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 142
EFP+R QP CQY+MRTG CK+G+SC+YHHP + + L+ G PLRPG +C+++
Sbjct: 303 EFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHF 362
Query: 143 MKTRQCKFGATCKFHH 158
+ CKFG CKF H
Sbjct: 363 AQHGICKFGPACKFDH 378
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 30 GLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNH 66
G+ + + P RP A C H+ + G C +G C+F+H
Sbjct: 342 GIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis
thaliana GN=At2g47850 PE=2 SV=2
Length = 468
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 244/349 (69%), Gaps = 30/349 (8%)
Query: 9 EGSQSDPSPEWTAPGTETGPEG----LGVGAESYPERPDEADCIHYVRTGFCAYGSRCRF 64
GSQS +P+WT +TG + LG+G++SYPERP DC +Y+RTG C YG+RCR+
Sbjct: 9 NGSQSAQAPDWTPADADTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRY 68
Query: 65 NHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVS 124
NHPRDR SV RA G ++PER G+P CQ+Y++TGTCK+GASCK+HHP+ GS+S+V
Sbjct: 69 NHPRDRASVEATVRATG-QYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVP 127
Query: 125 LNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPA 184
LN YGYP+R G+ ECSYY+KT QCKFG TCKFHHPQPAG P P P A
Sbjct: 128 LNIYGYPVREGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVP-----------PPPASA 176
Query: 185 PALYPPLQSPSVPSAQQYG-----VVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPY 239
P YP +QS +P QYG + VAR LL GSY+QG YGP+L++P + + GWSPY
Sbjct: 177 PQFYPSVQS-LMP--DQYGGPSSSLRVAR-TLLPGSYMQGAYGPMLLTPGVVPIPGWSPY 232
Query: 240 ATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFP 299
+ ++P SP G Q +VG++S+YG+TQL+++ P+ G Y SL S P+ QKE FP
Sbjct: 233 SAPVSPALSP--GAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSS---PTGVIQKEQAFP 287
Query: 300 ERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRP 348
ERPG+ ECQYY+KTGDCKFG+SC+FHHPR+ + P+ + LSP GLPLRP
Sbjct: 288 ERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRP 336
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 61/99 (61%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FPER G+P CQYY++TG CK+G SCK+HHPR +N L+ G PLRPG + C++Y+
Sbjct: 286 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYV 345
Query: 144 KTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPV 182
+ CKFG+TCKF HP P+ S P PV
Sbjct: 346 QNGFCKFGSTCKFDHPMGTIRYNPSASSLADAPVAPYPV 384
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
japonica GN=Os01g0258700 PE=2 SV=2
Length = 476
Score = 327 bits (837), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/318 (52%), Positives = 213/318 (66%), Gaps = 28/318 (8%)
Query: 39 PERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVM---GAARAGGGEFPERVGQPVCQY 95
PERP E DC++Y+RTG C +G RCR+NHPRDRG GA A ++PER GQP+C+Y
Sbjct: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116
Query: 96 YMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCK 155
YM+TGTCK+G +CKYHHP+Q G+V V LN G+P+R GEKECSYYMKT QCKFG TCK
Sbjct: 117 YMKTGTCKFGTNCKYHHPKQ-DGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCK 175
Query: 156 FHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVV----VARPPL 211
FHHP+ GVP P +YPPLQSPS+ S Y + + RPP+
Sbjct: 176 FHHPEFGGVPM-----------------TPGIYPPLQSPSIASPHPYASLANWQMGRPPV 218
Query: 212 LHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQL-SA 270
+ GSY+ G Y P+++S M LQGWSPY S+NP+ S G Q +V + +YG+ S+
Sbjct: 219 VPGSYIPGSYTPMMLSSGMIPLQGWSPYPASVNPVVS--GGAQQNVQAGPVYGMGHHGSS 276
Query: 271 SAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPREL 330
S AY G Y SS G SS++Q+EH FPERPGQ +CQYYM+TGDCKFG++C++HHPREL
Sbjct: 277 STIAYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPREL 336
Query: 331 IVPKMDVTLSPFGLPLRP 348
PK ++ LPLRP
Sbjct: 337 SAPKSGYMVNSLCLPLRP 354
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FPER GQP CQYYMRTG CK+GA+CKYHHPR+ + S +N PLRPG + C+YY
Sbjct: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYA 363
Query: 144 KTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPV 182
+ C++G CK+ HP +P+ P + P P+
Sbjct: 364 QNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAPYPI 402
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
+PERP + DC +Y+RTG C +G+ C+++HPR+ + P R G C YY
Sbjct: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYA 363
Query: 98 RTGTCKYGASCKYHHP 113
+ G C+YG +CKY HP
Sbjct: 364 QNGYCRYGVACKYDHP 379
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp.
japonica GN=Os01g0257400 PE=2 SV=1
Length = 466
Score = 287 bits (735), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 161/329 (48%), Positives = 211/329 (64%), Gaps = 34/329 (10%)
Query: 33 VGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGG------EFPE 86
V A PERP EADC++Y+RTG C YG CR+NHPRDR + A GGG E+PE
Sbjct: 43 VAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAA--AVLNGGGKTTHSAEYPE 100
Query: 87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTR 146
R GQPVC+YYM+ GTCK+G++CKY HPR+G SV V LN GYPLR GEK+C+YY+KT
Sbjct: 101 RPGQPVCEYYMKNGTCKFGSNCKYDHPREG--SVQAVMLNSSGYPLRSGEKDCTYYVKTG 158
Query: 147 QCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQY---- 202
CKFG+TCKFHHP+ GV P +YPP+Q + S+ Y
Sbjct: 159 HCKFGSTCKFHHPEIGGVSE-----------------TPNMYPPVQPQPISSSHPYQHLA 201
Query: 203 GVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSI 262
G + RPP+L GS++ G Y P+++ ++ +QGW+PY + +N ++S G +V +
Sbjct: 202 GWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVAS--AGGHQTVQAGPF 259
Query: 263 YGIT-QLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSS 321
YG++ Q ++A Y Y L SS PSSSS++E FP RPGQ ECQYY+KTG CKFGS+
Sbjct: 260 YGLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARPGQPECQYYLKTGSCKFGSA 319
Query: 322 CRFHHPRELIVPKMDVTLSPFGLPLRPVS 350
C++HHP+ L PK + LSP GLPLRP S
Sbjct: 320 CKYHHPQYLNTPKSNCMLSPLGLPLRPGS 348
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 62/99 (62%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FP R GQP CQYY++TG+CK+G++CKYHHP+ SN L+ G PLRPG + C+YY
Sbjct: 296 FPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYT 355
Query: 144 KTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPV 182
+ CKFG TCKF HP +P+ S + P P+
Sbjct: 356 QHGFCKFGPTCKFDHPMGTLSYSPSASSITDLPIAPYPL 394
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 37 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYY 96
++P RP + +C +Y++TG C +GS C+++HP+ + P R G C YY
Sbjct: 295 AFPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYY 354
Query: 97 MRTGTCKYGASCKYHHP 113
+ G CK+G +CK+ HP
Sbjct: 355 TQHGFCKFGPTCKFDHP 371
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 29 EGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRG 71
+ + + + YP R E DC +YV+TG C +GS C+F+HP G
Sbjct: 133 QAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGG 175
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa
subsp. japonica GN=Os11g0472000 PE=2 SV=2
Length = 444
Score = 272 bits (696), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/330 (45%), Positives = 195/330 (59%), Gaps = 29/330 (8%)
Query: 30 GLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVG 89
G + A YPER E DC +Y+RTG C +G C+FNHP DR + AAR G E+P+R+G
Sbjct: 45 GEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKG-EYPQRIG 103
Query: 90 QPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCK 149
QP CQYY++TGTCK+GA+CK+HHPR+ A + V LN GYPLRP EKEC+YY++T QCK
Sbjct: 104 QPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCK 163
Query: 150 FGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQY-GVVVAR 208
FG+TCKFHHPQP+ + AV V Y P QS + PS Y G V
Sbjct: 164 FGSTCKFHHPQPSNT----------MVAVRGSV-----YSPGQSVTSPSQHTYPGAVTNW 208
Query: 209 PPLLHGSYVQGP-------YGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSS 261
P S++ P Y V+V P + + GW+PYA + SS Q + G +
Sbjct: 209 PLSRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIG--SSSSDDQQRTAGGAQ 266
Query: 262 IYGITQLSAS-APAYTGTYQSLPSSVGPSS--SSQKEHPFPERPGQQECQYYMKTGDCKF 318
Y ++ S + G + S + P + Q+E FPERP Q ECQ+YMKTGDCKF
Sbjct: 267 YYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKF 326
Query: 319 GSSCRFHHPRELIVPKMDVTLSPFGLPLRP 348
G+ C+FHHP+E I+P + LS GLPLRP
Sbjct: 327 GAVCKFHHPKERIIPTPNCALSSLGLPLRP 356
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 61/103 (59%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FPER QP CQ+YM+TG CK+GA CK+HHP++ N +L+ G PLRPGE C++Y
Sbjct: 306 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYS 365
Query: 144 KTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPA 186
+ CKFG CKF HP + SP V+A P PA
Sbjct: 366 RYGICKFGPNCKFDHPMGTVMYGLATSPTGDVSARRMLAPVPA 408
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 39 PERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVM-GAARAGGGEFPER 87
P RP E C Y R G C +G C+F+HP G+VM G A + G+ R
Sbjct: 353 PLRPGEPICTFYSRYGICKFGPNCKFDHP--MGTVMYGLATSPTGDVSAR 400
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum
sativum PE=2 SV=1
Length = 417
Score = 267 bits (683), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 189/318 (59%), Gaps = 26/318 (8%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
YPE P E DC +Y+RTG C +G+ CRFNHP +R + AR G EFPER+GQP CQYY+
Sbjct: 27 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKG-EFPERLGQPECQYYL 85
Query: 98 RTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFH 157
+TGTCK+GA+C++HHP+ AG V+LN GYPLRP E E +YY++T QCKFG TCKFH
Sbjct: 86 KTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESERAYYLRTGQCKFGNTCKFH 145
Query: 158 HPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYV 217
HPQP+ + + +YP +QSP+ P Q Y + SYV
Sbjct: 146 HPQPSN--------------MVLSMRGSTVYPTVQSPTTPGQQSYAAGITN--WSSSSYV 189
Query: 218 -----QGP--YGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSA 270
QGP Y P+++ + S+ GWS Y + S T +S G + +
Sbjct: 190 PSPRWQGPSSYAPLILPQGVVSVPGWSTYGGQMGSESPQQTMRNDQTYGTSHQGELENAG 249
Query: 271 SAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPREL 330
AY+ Y+S VG + Q+++ FPERP Q ECQ+YMKTGDCKFG+ CRFHHPRE
Sbjct: 250 LQGAYS-QYRSGSVPVG-FYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRER 307
Query: 331 IVPKMDVTLSPFGLPLRP 348
+P D LSP GLPLRP
Sbjct: 308 QIPAPDCVLSPIGLPLRP 325
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 51/76 (67%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FPER QP CQ+YM+TG CK+GA C++HHPR+ + L+ G PLRPGE C +Y
Sbjct: 275 FPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYS 334
Query: 144 KTRQCKFGATCKFHHP 159
+ CKFG +CKF HP
Sbjct: 335 RYGICKFGPSCKFDHP 350
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Query: 289 SSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHP--RELIV 332
SS + + P+PE PG+ +C YY++TG C+FG++CRF+HP R+L +
Sbjct: 18 SSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAI 63
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 39 PERPDEADCIHYVRTGFCAYGSRCRFNHP 67
P RP E C+ Y R G C +G C+F+HP
Sbjct: 322 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 350
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
subsp. japonica GN=Os01g0917400 PE=2 SV=2
Length = 439
Score = 264 bits (675), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 145/320 (45%), Positives = 190/320 (59%), Gaps = 26/320 (8%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
YPER E DC +Y+RTG C +G CRFNHP+DR + +AR G E+PER+GQP CQYY+
Sbjct: 77 YPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKG-EYPERMGQPECQYYL 135
Query: 98 RTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFH 157
+TGTCK+G +CK+HHPR+ AG V LN GYPLRP EKEC+YY+KT QCK+G TCKFH
Sbjct: 136 KTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFH 195
Query: 158 HPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYV 217
HP+ A+ + +P +YP + S S + Y +A GS++
Sbjct: 196 HPE-------------LFNAMASSRGSP-IYPSVHS-SATAGPPYTGTMASWAFPRGSFI 240
Query: 218 QGP-------YGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSA 270
P Y P++V + + W+ Y + P+SS + QS G+ YG +Q
Sbjct: 241 PSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSP-GAQQTYGTSQQVD 299
Query: 271 SAPAYTGTYQSLPSSV--GPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPR 328
++ G SS P + Q+E+ FPERP Q ECQYYMKTGDCKFG+ C+FHHPR
Sbjct: 300 ASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPR 359
Query: 329 ELIVPKMDVTLSPFGLPLRP 348
+P D LSP GLPLRP
Sbjct: 360 VRSMPTPDCVLSPVGLPLRP 379
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 53/79 (67%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FPER QP CQYYM+TG CK+GA CK+HHPR + + L+ G PLRPGE+ C +Y
Sbjct: 329 FPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYS 388
Query: 144 KTRQCKFGATCKFHHPQPA 162
+ CKFGA CKF HP A
Sbjct: 389 RYGICKFGANCKFDHPTMA 407
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 277 GTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRE 329
G +Q + S S + + P+PER G+ +C YY++TG C+FG SCRF+HP++
Sbjct: 59 GMWQQMTMS---GSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQD 108
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 39 PERPDEADCIHYVRTGFCAYGSRCRFNHP 67
P RP E C Y R G C +G+ C+F+HP
Sbjct: 376 PLRPGEELCKFYSRYGICKFGANCKFDHP 404
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
subsp. japonica GN=Os12g0405100 PE=2 SV=1
Length = 454
Score = 262 bits (669), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/321 (44%), Positives = 188/321 (58%), Gaps = 28/321 (8%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
YPER E DC +Y+RTG C +G C+FNHP +R + AAR G E+P RVGQP CQYY+
Sbjct: 63 YPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVAAARMNG-EYPYRVGQPECQYYL 121
Query: 98 RTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFH 157
+TGTCK+GA+CK+HHPR+ A + V LN GYP+RP EKEC+YY++T QCKF +TCKFH
Sbjct: 122 KTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYYLRTGQCKFASTCKFH 181
Query: 158 HPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQY-GVVVARPPLLHGSY 216
HPQP+ + AV ++Y P QS + P Y G V S+
Sbjct: 182 HPQPSNT----------MVAVRN-----SMYSPGQSATSPGQHTYPGAVTNWTLSRSASF 226
Query: 217 VQGP-------YGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLS 269
+ P Y V+V + + GW+PYA + SSP ++ V ++ YG Q
Sbjct: 227 IASPRWPGHSGYAQVIVPQGLVQVPGWNPYAAQMGS-SSPDDQQRTPV-TTQYYGSRQSE 284
Query: 270 ASAPAYTGTYQSLPSSVGPSS--SSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHP 327
G YQS P + Q E+ FPERP Q ECQ+YMKTGDCKFG+ C+FHHP
Sbjct: 285 TGGMGDHGMYQSYQGGSVPVGVYTVQGENIFPERPDQPECQFYMKTGDCKFGAVCKFHHP 344
Query: 328 RELIVPKMDVTLSPFGLPLRP 348
+E +VP + L+ GLPLRP
Sbjct: 345 KERLVPAPNCALNSLGLPLRP 365
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 60/99 (60%)
Query: 80 GGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKEC 139
G FPER QP CQ+YM+TG CK+GA CK+HHP++ N +LN G PLRPGE C
Sbjct: 311 GENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVC 370
Query: 140 SYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAV 178
++Y + CKFG CKF HP + SP V+++
Sbjct: 371 TFYSRYGICKFGPNCKFDHPMGTLMYGSATSPRGDVSSM 409
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 PERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVM 74
P RP E C Y R G C +G C+F+HP G++M
Sbjct: 362 PLRPGEPVCTFYSRYGICKFGPNCKFDHP--MGTLM 395
>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis
thaliana GN=ZFN1 PE=1 SV=1
Length = 397
Score = 257 bits (656), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/317 (43%), Positives = 183/317 (57%), Gaps = 36/317 (11%)
Query: 37 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYY 96
SYPERP E DC +Y+RTG C +GS CRFNHPRDR V+ AR G E+PER+GQP C+YY
Sbjct: 36 SYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRG-EYPERIGQPECEYY 94
Query: 97 MRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKF 156
++TGTCK+G +CK+HHPR AG VSLN GYPLR E +C+Y+++T CKFG TCKF
Sbjct: 95 LKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKF 154
Query: 157 HHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSY 216
+HPQP PT + VP++ Q +R +
Sbjct: 155 NHPQPQ----------------PTNM------------MVPTSGQQSYPWSRASFIASPR 186
Query: 217 VQGP--YGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPA 274
Q P Y +++ + +QGW+PY+ L +S GTG + + + + +
Sbjct: 187 WQDPSSYASLIMPQGVVPVQGWNPYSGQLGSVSPSGTGNDQNYRNLQQNETIESGSQSQG 246
Query: 275 YTGTYQ---SLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELI 331
Y S+P +G + +E+ FPERPGQ ECQ+YMKTGDCKFG+ C+FHHPR+
Sbjct: 247 SFSGYNPGSSVP--LGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQ 304
Query: 332 VPKMDVTLSPFGLPLRP 348
P D LS GLPLRP
Sbjct: 305 APPPDCLLSSIGLPLRP 321
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 55/97 (56%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FPER GQP CQ+YM+TG CK+G CK+HHPR + L+ G PLRPGE C +Y
Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYT 330
Query: 144 KTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPT 180
+ CKFG +CKF HP T S +V T
Sbjct: 331 RYGICKFGPSCKFDHPMRVFTYDNTASETDEVVETST 367
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Query: 289 SSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHP--RELIV 332
S + + +PERPG+ +C YY++TG C+FGS+CRF+HP REL++
Sbjct: 28 SDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 121 SNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQ 160
S+ ++ YP RPGE +CSYY++T C+FG+TC+F+HP+
Sbjct: 28 SDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPR 67
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 39 PERPDEADCIHYVRTGFCAYGSRCRFNHP 67
P RP E C+ Y R G C +G C+F+HP
Sbjct: 318 PLRPGEPLCVFYTRYGICKFGPSCKFDHP 346
>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis
thaliana GN=ZFN3 PE=2 SV=2
Length = 375
Score = 234 bits (597), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 137/320 (42%), Positives = 179/320 (55%), Gaps = 60/320 (18%)
Query: 29 EGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERV 88
+ +GV SYPER E DC +Y+RTG C +GS CRFNHP DR V+ AR G E+PER+
Sbjct: 31 DTMGVDG-SYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKG-EYPERI 88
Query: 89 GQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQC 148
GQP C++Y++TGTCK+G +CK+HHPR AG +VS+N YPLRP E +CSY+++ QC
Sbjct: 89 GQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQC 148
Query: 149 KFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVAR 208
KFG TCKF+HPQ T S V+ +PV Y LQS + + +
Sbjct: 149 KFGGTCKFNHPQ-------TQSTNLMVSVRGSPV-----YSALQSLTGQPSYSWS----- 191
Query: 209 PPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQL 268
S+V P P L PS F+ +G+Q + SS +
Sbjct: 192 ----RTSFVANP--PRLQDPSGFA------------------SGSQGGLFSSGFH----- 222
Query: 269 SASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPR 328
S + + +LP +E+ FPERPGQ ECQ+YMKTGDCKFG+ C+FHHPR
Sbjct: 223 --SGNSVPLGFYALP----------RENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPR 270
Query: 329 ELIVPKMDVTLSPFGLPLRP 348
+ P D LS GLPLRP
Sbjct: 271 DRQTPPPDCVLSSVGLPLRP 290
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FPER GQP CQ+YM+TG CK+G CK+HHPR + L+ G PLRPGE C +Y
Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 299
Query: 144 KTRQCKFGATCKFHHP 159
+ CKFG +CKF HP
Sbjct: 300 RYGICKFGPSCKFDHP 315
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 22 PGTETGPEG-LGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAG 80
P + G +G + V SYP RP+E DC +++R G C +G C+FNHP+ + + + + G
Sbjct: 113 PRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGTCKFNHPQTQSTNLMVSVRG 172
Query: 81 G---GEFPERVGQPVCQYYMRTGTCK---------YGASCKYHHPRQGAGSVSNVSLNYY 128
GQP + + + + + G S ++V L +Y
Sbjct: 173 SPVYSALQSLTGQPSYSWSRTSFVANPPRLQDPSGFASGSQGGLFSSGFHSGNSVPLGFY 232
Query: 129 G------YPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAP 167
+P RPG+ EC +YMKT CKFG CKFHHP+ P P
Sbjct: 233 ALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPP 277
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 285 SVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHP--RELIV 332
++G + + +PER G+ +C YY++TG C+FGS+CRF+HP R+L++
Sbjct: 26 NLGSDDTMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 25 ETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHP 67
+T P + + P RP E C+ Y R G C +G C+F+HP
Sbjct: 273 QTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 315
>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis
thaliana GN=At1g04990 PE=2 SV=1
Length = 404
Score = 181 bits (460), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 162/327 (49%), Gaps = 54/327 (16%)
Query: 24 TETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGE 83
ETG E L YP+RP E DC Y+RTG C YGS CR+NHP + + E
Sbjct: 34 NETGVEELN----PYPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKE---E 86
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
PER+GQP C+Y+++TG CKYG +CKYHHP+ G+ V N G P+R GEK C YY+
Sbjct: 87 LPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGA-QPVMFNVIGLPMRLGEKPCPYYL 145
Query: 144 KTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYG 203
+T C+FG CKFHHPQP A + PA L + + YG
Sbjct: 146 RTGTCRFGVACKFHHPQPDN--------GHSTAYGMSSFPAADL---RYASGLTMMSTYG 194
Query: 204 VVVARPPLLHGSYVQGPYGPVLVSPSMFSL--QGWSPYATSLNPISSPGTGTQSSVGSSS 261
+ P + SYV P+LVSPS L QGW+PY + S+S
Sbjct: 195 TLPR--PQVPQSYV-----PILVSPSQGFLPPQGWAPYMAA----------------SNS 231
Query: 262 IYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSS 321
+Y + + P Y+G+ S+ +V + E Q EC+++M TG CK+G
Sbjct: 232 MYNV----KNQPYYSGSSASMAMAVALNRG------LSESSDQPECRFFMNTGTCKYGDD 281
Query: 322 CRFHHPRELIVPKMDVTLSPFGLPLRP 348
C++ HP I ++PF LP RP
Sbjct: 282 CKYSHPGVRISQPPPSLINPFVLPARP 308
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 36/180 (20%)
Query: 15 PSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPR-DRG-- 71
P+ ++ P G + + P R E C +Y+RTG C +G C+F+HP+ D G
Sbjct: 109 PTCKYHHPKDRNGAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHS 168
Query: 72 SVMGAARAGGGEFPERVGQPVCQY--------------------------------YMRT 99
+ G + + G + YM
Sbjct: 169 TAYGMSSFPAADLRYASGLTMMSTYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYMAA 228
Query: 100 GTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP 159
Y + ++ A V+LN G + EC ++M T CK+G CK+ HP
Sbjct: 229 SNSMYNVKNQPYYSGSSASMAMAVALN-RGLSESSDQPECRFFMNTGTCKYGDDCKYSHP 287
>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
thaliana GN=At5g63260 PE=2 SV=2
Length = 435
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 156/320 (48%), Gaps = 45/320 (14%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPV---CQ 94
YP RPD DC Y+RTG C YGS C+FNHP R +G R E E V P C+
Sbjct: 98 YPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQIGRERVR--ERDEDVENPKLMECK 155
Query: 95 YYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATC 154
YY RTG CKYG SC++ H ++ S LN+ G P+RPGEKEC +YM+ CKFG+ C
Sbjct: 156 YYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRNGSCKFGSDC 215
Query: 155 KFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSV-PSAQQYGVVVARPPLLH 213
KF+HP P + V +P LY S P A + H
Sbjct: 216 KFNHPDPTAI-----------GGVDSP-----LYRGNNGGSFSPKAPSQASSTSWSSTRH 259
Query: 214 GSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAP 273
+ G PSMF P++ + P +S G Q+S S Y + +P
Sbjct: 260 MNGT----GTAPFIPSMF------PHSRGVTPQASDWNGYQAS----SAYPPER----SP 301
Query: 274 AYTGTYQSLPSSVGPSSSSQKEH-----PFPERPGQQECQYYMKTGDCKFGSSCRFHHPR 328
+YQ S SS SQ +H FPERP Q EC YY+KTGDCKF C++HHP+
Sbjct: 302 LAPSSYQVNNSLAETSSFSQYQHQMSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPK 361
Query: 329 ELIVPKMDVTLSPFGLPLRP 348
+ + + + GLPLRP
Sbjct: 362 NRLPKQAAFSFNDKGLPLRP 381
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 83 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 142
EFPER QP C YY++TG CK+ CKYHHP+ + S N G PLRP + C++Y
Sbjct: 330 EFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHY 389
Query: 143 MKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAA 177
+ CKFG C+F H P P +PS + V A
Sbjct: 390 SRYGICKFGPACRFDHSIP---PTFSPSSSQTVEA 421
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 33 VGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPV 92
+ E +PERPD+ +C +Y++TG C + +C+++HP++R A P R Q +
Sbjct: 326 MSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSM 385
Query: 93 CQYYMRTGTCKYGASCKYHH 112
C +Y R G CK+G +C++ H
Sbjct: 386 CTHYSRYGICKFGPACRFDH 405
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 167 bits (424), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 159/331 (48%), Gaps = 64/331 (19%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDR-------GSVMGAARAGGGEFPERVGQ 90
YP RP DC Y+RTG C +GS C+FNHP R V GG ++G
Sbjct: 107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGG-----KLGL 161
Query: 91 PVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKF 150
C+YY RTG CKYG +C+++H +G S LN+ G PLRPGE EC YYM+ CK+
Sbjct: 162 IDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKY 221
Query: 151 GATCKFHHPQPAGVPAPTPSPA---PQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVA 207
GA CKF+HP P + T SP+ ++ T P Q +
Sbjct: 222 GAECKFNHPDPTTI-GGTDSPSFRGNNGVSIGTFSPKATF------------QASSTSWS 268
Query: 208 RPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGS-------- 259
P ++G+ P+ PV++S + TS NP G Q+SV S
Sbjct: 269 SPRHVNGT---SPFIPVMLSQTHG--------VTSQNP---EWNGYQASVYSSERGVFSP 314
Query: 260 SSIYGITQLSASAPAYTGTYQ-SLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKF 318
S+ Y + SA Y+ +P+ FPERP Q EC YYMKTGDCKF
Sbjct: 315 STTYLMNNSSAETSMLLSQYRHQMPA-----------EEFPERPDQPECSYYMKTGDCKF 363
Query: 319 GSSCRFHHPRELIVPKM-DVTLSPFGLPLRP 348
+C++HHP+ + PK+ L+ GLPLRP
Sbjct: 364 KFNCKYHHPKNRL-PKLPPYALNDKGLPLRP 393
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 83 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 142
EFPER QP C YYM+TG CK+ +CKYHHP+ + +LN G PLRP + C+YY
Sbjct: 342 EFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYY 401
Query: 143 MKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPA 184
+ CKFG C+F H V P + + Q P V A
Sbjct: 402 SRYGICKFGPACRFDH----SVQPPYSTESSQAIVEPPQVSA 439
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 35 AESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQ 94
AE +PERPD+ +C +Y++TG C + C+++HP++R + P R Q +C
Sbjct: 340 AEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICT 399
Query: 95 YYMRTGTCKYGASCKYHHPRQ 115
YY R G CK+G +C++ H Q
Sbjct: 400 YYSRYGICKFGPACRFDHSVQ 420
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 290 SSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHP 327
S ++ E+ +P RPG ++C +YM+TG CKFGSSC+F+HP
Sbjct: 99 SENESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHP 136
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
thaliana GN=ZFN2 PE=2 SV=1
Length = 453
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 157/326 (48%), Gaps = 73/326 (22%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
YP+RP E DC ++RTG C YG+ CR+NHP ++ + PERVGQP C+
Sbjct: 41 YPDRPGERDCQFFLRTGQCGYGNSCRYNHPL--TNLPQGIIYYRDQLPERVGQPDCE--- 95
Query: 98 RTGTCKYGASCKYHHP--RQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCK 155
TG CKYG +CKYHHP R GAG V N G P+R GEK C YYM+T C+FG CK
Sbjct: 96 -TGACKYGPTCKYHHPKDRNGAGPVL---FNVLGLPMRQGEKPCPYYMQTGLCRFGVACK 151
Query: 156 FHHPQPAGVP-------APTPSPA---PQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVV 205
FHHP P P A + P+ P + + PA Y + P VP +Q
Sbjct: 152 FHHPHPHSQPSNGHSAYAMSSFPSVGFPYASGMTMVSLPPATYGAIPRPQVPQSQA---- 207
Query: 206 VARPPLLHGSYVQGPYGPVLVSPSMFSL--QGWSPYATSLNPISSPGTGTQSSVGSSSIY 263
Y P +V+PS L QGW+ Y T+ NP IY
Sbjct: 208 ---------------YMPYMVAPSQGLLPPQGWATYMTASNP----------------IY 236
Query: 264 GI-TQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSC 322
+ TQL +S+ S+ + + H F ER EC+++M TG CK+G C
Sbjct: 237 NMKTQLDSSS-----------SASVAVTVTSHHHSFSER---AECRFFMNTGTCKYGDDC 282
Query: 323 RFHHPRELIVPKMDVTLSPFGLPLRP 348
++ HP+E ++ L+P LP RP
Sbjct: 283 KYSHPKERLLQSPPTLLNPIVLPARP 308
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
F ER C+++M TGTCKYG CKY HP++ LN P RPG+ C +
Sbjct: 261 FSERA---ECRFFMNTGTCKYGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFK 317
Query: 144 KTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVP-APALYPPLQSPSVPS 198
CKFGA CKF H + + P + ++++PTP P AP + L+ S PS
Sbjct: 318 AYGFCKFGANCKFDH---SMLLNPYNNTGLAMSSLPTPYPYAPPVSTNLRISSPPS 370
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 37 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYY 96
S+ ER A+C ++ TG C YG C+++HP++R P R GQP C +
Sbjct: 260 SFSER---AECRFFMNTGTCKYGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNF 316
Query: 97 MRTGTCKYGASCKYHH 112
G CK+GA+CK+ H
Sbjct: 317 KAYGFCKFGANCKFDH 332
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 31/35 (88%)
Query: 293 QKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHP 327
++ P+P+RPG+++CQ++++TG C +G+SCR++HP
Sbjct: 36 EQSSPYPDRPGERDCQFFLRTGQCGYGNSCRYNHP 70
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 15 PSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHP 67
P+ ++ P G + P R E C +Y++TG C +G C+F+HP
Sbjct: 103 PTCKYHHPKDRNGAGPVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHHP 155
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 163/332 (49%), Gaps = 51/332 (15%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHP--RDRGSVMGAARAG---GGEFPERVGQPV 92
YP+R E DC HY++T C +G CRF+HP G + A E+PER G+P
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPD 230
Query: 93 CQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGA 152
C YY++T CKYG+ CK++HPR+ A +VS + + P RP E C++YMKT +CKFG
Sbjct: 231 CPYYIKTQRCKYGSKCKFNHPREEA-AVSVETQD--SLPERPSEPMCTFYMKTGKCKFGL 287
Query: 153 TCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLL 212
+CKFHHP+ +P+ + V S P A V P L
Sbjct: 288 SCKFHHPKDIQLPSSSQDIGSSVGLT----------------SEPDATNNPHVTFTPALY 331
Query: 213 HGSY--------VQGPYGPVLVSPSMFSLQGWS-PYATSLNPISSPGTGTQSSVGSSSIY 263
H S V P+ S + ++ P T+ P ++ G S+ SS+
Sbjct: 332 HNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAA---GVNYSLVSSNTA 388
Query: 264 GITQLSASAPAYTGTYQSLPS-SVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSC 322
+ L PA T YQ+L ++G S++ +P+RPGQ EC YYMKTG+CKFG C
Sbjct: 389 NL-NLGLVTPA-TSFYQTLTQPTLGVISAT-----YPQRPGQSECDYYMKTGECKFGERC 441
Query: 323 RFHHPRELIVPKM-------DVTLSPFGLPLR 347
+FHHP + + +V LS G P R
Sbjct: 442 KFHHPADRLSAMTKQAPQQPNVKLSLAGYPRR 473
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 106/211 (50%), Gaps = 42/211 (19%)
Query: 33 VGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPV 92
V E YPERP E DC +Y++T C YGS+C+FNHPR+ +V + PER +P+
Sbjct: 217 VPNEEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQ---DSLPERPSEPM 273
Query: 93 CQYYMRTGTCKYGASCKYHHPR--------QGAGSVSNVSL------------------N 126
C +YM+TG CK+G SCK+HHP+ Q GS ++ N
Sbjct: 274 CTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALYHN 333
Query: 127 YYGYPLRPGEKECSYYMKTRQCKFGATCKFHH-------PQPAGVPAPTPSPAPQVAAVP 179
G P+R GE +C +Y+KT CK+GATC+++H PQ AGV S +
Sbjct: 334 SKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLG 393
Query: 180 TPVPAPALYPPLQSPSVPSAQQYGVVVARPP 210
PA + Y L P++ GV+ A P
Sbjct: 394 LVTPATSFYQTLTQPTL------GVISATYP 418
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 85/188 (45%), Gaps = 41/188 (21%)
Query: 34 GAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAG------------- 80
++ P R E DC Y++TG C YG+ CR+NHP + AA
Sbjct: 333 NSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNL 392
Query: 81 ---------------------GGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGS 119
+P+R GQ C YYM+TG CK+G CK+HHP +
Sbjct: 393 GLVTPATSFYQTLTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSA 452
Query: 120 VS-------NVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPA 172
++ NV L+ GYP R G C YYMKT CK+GATCKF HP P V A T S A
Sbjct: 453 MTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPGEVMAKTTSEA 512
Query: 173 PQVAAVPT 180
A T
Sbjct: 513 DAAGATNT 520
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 7/90 (7%)
Query: 31 LGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGA-------ARAGGGE 83
LGV + +YP+RP +++C +Y++TG C +G RC+F+HP DR S M +
Sbjct: 410 LGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAG 469
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHP 113
+P R G C YYM+TGTCKYGA+CK+ HP
Sbjct: 470 YPRREGALNCPYYMKTGTCKYGATCKFDHP 499
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 291 SSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTL-SPFGLPLRP 348
S + + PERP + C +YMKTG CKFG SC+FHHP+++ +P + S GL P
Sbjct: 258 SVETQDSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEP 316
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPVSFFW 353
+PERPG+ +C YY+KT CK+GS C+F+HPRE ++ S P P+ F+
Sbjct: 222 YPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFY 277
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHP 327
+P R G C YYMKTG CK+G++C+F HP
Sbjct: 470 YPRREGALNCPYYMKTGTCKYGATCKFDHP 499
>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp.
japonica GN=Os01g0616400 PE=2 SV=2
Length = 462
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 160/338 (47%), Gaps = 45/338 (13%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPR---DRGSVMGAARAGGGE--FPERVGQPV 92
YP+RP E DC Y+ T C +G C+F+HP+ + G +A E +PE+ G+P
Sbjct: 102 YPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEESYPEQEGEPD 161
Query: 93 CQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYG-------YPLRPGEKECSYYMKT 145
C ++M+TG CK+G+ CK++HP++ ++++ + N P+RP E CS+Y KT
Sbjct: 162 CPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKT 221
Query: 146 RQCKFGATCKFHHPQPAGVPAPTPSPAPQVAA---VPTPVPAPALYPPLQSPSVPSAQQY 202
+CKF A CKF+HP+ +P+ P V A ++ +Q+P V +AQ++
Sbjct: 222 GKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTP-VAAAQEF 280
Query: 203 GVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWS-PYATSLN---PISSPGTGTQSSVG 258
++ + V P+ + S S ++ P LN P+ T S+
Sbjct: 281 N---SKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPESML 337
Query: 259 SSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKF 318
+S Q + +P GP + +P+RPG C +YMKTG CKF
Sbjct: 338 LNSSANFMQ------GFDFHAAHMPVGPGPVT-------YPQRPGATVCDFYMKTGFCKF 384
Query: 319 GSSCRFHHPRELIVP---------KMDVTLSPFGLPLR 347
C+FHHP + P + V L+ GLP R
Sbjct: 385 ADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRR 422
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 144/354 (40%), Gaps = 79/354 (22%)
Query: 17 PEWTAPG-TETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMG 75
P+W G E ESYPE+ E DC +++TG C +GS+C+FNHP+++ + +
Sbjct: 131 PQWVPEGGIPNWKEQAANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALA 190
Query: 76 AAR-------AGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ------------- 115
+ A P R +P+C +Y +TG CK+ A CK++HP+
Sbjct: 191 SGNTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESA 250
Query: 116 -----------GAGSVSNV---------SLNYYGYPLRPGEKECSYYMKTRQCKFGATCK 155
A SVS N G P+RPGE +C +YMK CKFG+TC+
Sbjct: 251 VTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCR 310
Query: 156 FHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHG- 214
F+HP + P P + P P L + S Q + A P+ G
Sbjct: 311 FNHPDRLVLNFPLP-----LGQTILPTPESMLL----NSSANFMQGFDFHAAHMPVGPGP 361
Query: 215 -SYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAP 273
+Y Q P V + G+ +A P + SAP
Sbjct: 362 VTYPQRPGATVC---DFYMKTGFCKFADRCK-FHHP------------------IDRSAP 399
Query: 274 AYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHP 327
+ ++ SV + + P R C +YMKTG CKFG C+F HP
Sbjct: 400 DPSANWEPAEESVQLTLAG-----LPRREDAVVCAFYMKTGVCKFGMQCKFDHP 448
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 78/171 (45%), Gaps = 44/171 (25%)
Query: 34 GAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDR-----------------GSVMGA 76
++ P RP E DC Y++ G C +GS CRFNHP DR S++
Sbjct: 281 NSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHP-DRLVLNFPLPLGQTILPTPESMLLN 339
Query: 77 ARAG---GGEF--------------PERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG- 118
+ A G +F P+R G VC +YM+TG CK+ CK+HHP +
Sbjct: 340 SSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAP 399
Query: 119 --------SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161
+ +V L G P R C++YMKT CKFG CKF HP P
Sbjct: 400 DPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPP 450
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 31 LGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGE------- 83
+G G +YP+RP C Y++TGFC + RC+F+HP DR + +A E
Sbjct: 357 VGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTL 416
Query: 84 --FPERVGQPVCQYYMRTGTCKYGASCKYHH--PRQGAGSVSN 122
P R VC +YM+TG CK+G CK+ H P++ VSN
Sbjct: 417 AGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSN 459
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 9 EGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPR 68
+ S DPS W E E + + P R D C Y++TG C +G +C+F+HP
Sbjct: 395 DRSAPDPSANW-----EPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPP 449
Query: 69 DRGSVMGAARAG 80
+ ++ + +G
Sbjct: 450 PQEAIAKVSNSG 461
>sp|Q2QTY2|C3H65_ORYSJ Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa
subsp. japonica GN=Os12g0278800 PE=2 SV=1
Length = 529
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 135/286 (47%), Gaps = 41/286 (14%)
Query: 74 MGAARAGGGEF-PERVGQPVCQYYMRTGTCKYGASCKYHHP--RQGAGSVSNVSLNYYGY 130
+ A+ EF E Q C+YY G CK+G +CKY H ++G V LN+ G
Sbjct: 223 LKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGL 282
Query: 131 PLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVP-------TPVP 183
PLRPGEKEC YYM+T CK+ CKFHHP P+ V + P + P + P
Sbjct: 283 PLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQP 342
Query: 184 APALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPY-ATS 242
+++P ++ + + +A P SY G +L M+ W+ Y
Sbjct: 343 NASIWPDQRT----VNEHHVPFIAPSP----SYSAG----MLPPQGMYPPPEWNGYHQVP 390
Query: 243 LNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERP 302
LNP PG Q + I AP G +Q +PS +PERP
Sbjct: 391 LNPYYPPGVPFQHFPAAP----INHPMYKAPEIPG-HQQVPSEE-----------YPERP 434
Query: 303 GQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRP 348
GQ ECQ+++K+G CKF C++HHPR + P LSP GLP++P
Sbjct: 435 GQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAG--ALSPLGLPIKP 478
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 33 VGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPV 92
V +E YPERP + +C H+V++GFC + +C+++HPR GA G P + QPV
Sbjct: 425 VPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLG--LPIKPDQPV 482
Query: 93 CQYYMRTGTCKYGASCKYHHP 113
C YY R G CK+G +C Y+HP
Sbjct: 483 CTYYGRYGVCKFGPACAYNHP 503
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 9/100 (9%)
Query: 64 FNHPRDRG-SVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ---GAGS 119
NHP + + G + E+PER GQP CQ+++++G CK+ CKYHHPR AG+
Sbjct: 409 INHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGA 468
Query: 120 VSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP 159
+S + G P++P + C+YY + CKFG C ++HP
Sbjct: 469 LSPL-----GLPIKPDQPVCTYYGRYGVCKFGPACAYNHP 503
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 28 PEGLGVGAESYPERPDEA----DCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGE 83
P+ L V E E E +C +Y G C +G C++ H RD A
Sbjct: 220 PKELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLH-RDGKEGKTDAEKVDLN 278
Query: 84 F---PERVGQPVCQYYMRTGTCKYGASCKYHHP 113
F P R G+ C YYMRTG+CKY +CK+HHP
Sbjct: 279 FLGLPLRPGEKECPYYMRTGSCKYATNCKFHHP 311
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHP 327
FP RPG+ +C YY+K G C+FG C+F+HP
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHP 134
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 130 YPLRPGEKECSYYMKTRQCKFGATCKFHHP 159
+P RPGE +C+YY+K C+FG CKF+HP
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHP 134
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHP 67
+P RP E DC +YV+ G C +G +C+FNHP
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHP 134
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGS 119
FP R G+P C YY++ G+C++G CK++HP + S
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKKKS 140
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 25 ETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHP 67
+T E + + P RP E +C +Y+RTG C Y + C+F+HP
Sbjct: 269 KTDAEKVDLNFLGLPLRPGEKECPYYMRTGSCKYATNCKFHHP 311
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
subsp. japonica GN=Os06g0520600 PE=2 SV=1
Length = 711
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 75/147 (51%), Gaps = 21/147 (14%)
Query: 36 ESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQY 95
E +P RP E DC +YV+ G C +G C +NHP R + +FP R G+P C Y
Sbjct: 39 EQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSY 98
Query: 96 YMRTGTCKYGASCKYHHP---------------------RQGAGSVSNVSLNYYGYPLRP 134
Y++ G+CK+G +C+++HP +G V V LN G PLRP
Sbjct: 99 YVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRP 158
Query: 135 GEKECSYYMKTRQCKFGATCKFHHPQP 161
G CSYYM CKFG CKF HP P
Sbjct: 159 GTGLCSYYMNRGICKFGTNCKFDHPDP 185
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 73 VMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP----RQGAGSVSNVSLNYY 128
V G + + P R G+P C YY++ G+CK+G SC Y+HP + GA
Sbjct: 30 VAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAE---- 85
Query: 129 GYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVP 165
+P RPGE +CSYY+K CKFG C+F+HP VP
Sbjct: 86 QFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVP 122
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 21/105 (20%)
Query: 35 AESYPERPDEADCIHYVRTGFCAYGSRCRFNHP---------------------RDRGSV 73
AE +P RP E DC +YV+ G C +G CRFNHP + S
Sbjct: 84 AEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSK 143
Query: 74 MGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG 118
+ + P R G +C YYM G CK+G +CK+ HP G+
Sbjct: 144 VEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHPDPGSD 188
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 21/72 (29%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVP--------------------KMD- 336
FP RPG+ +C YY+K G CKFG +CRF+HP + VP K++
Sbjct: 87 FPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQ 146
Query: 337 VTLSPFGLPLRP 348
V L+ GLPLRP
Sbjct: 147 VKLNVLGLPLRP 158
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 283 PSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHP 327
P G + +++HP RPG+ +C YY+K G CKFG SC ++HP
Sbjct: 28 PPVAGKTKKVEEQHP--RRPGEPDCSYYVKFGSCKFGISCVYNHP 70
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHP 327
P RPG C YYM G CKFG++C+F HP
Sbjct: 154 LPLRPGTGLCSYYMNRGICKFGTNCKFDHP 183
>sp|Q0DBW8|C3H42_ORYSJ Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa
subsp. japonica GN=Os06g0519400 PE=2 SV=1
Length = 279
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 90/183 (49%), Gaps = 33/183 (18%)
Query: 2 ERHGRVSEGSQSDPSPEWTAPGT-ETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGS 60
++H + + D P T+ ET P+ V + YP RP DC +YV G C +G
Sbjct: 40 QQHASSTVKTLDDRRPAGTSSSAGETEPKA-AVEPQEYPRRPGVPDCSYYVEFGSCKFGM 98
Query: 61 RCRFNHPRDRGSVMGAARAGGG---EFPERVGQPVCQYYMRTGTCKYGASCKYHHP---- 113
RC +NHP A AGG E P+R G+ C +Y+R G CKYG +C+++HP
Sbjct: 99 RCLYNHP--------AKHAGGCDKLEHPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRL 150
Query: 114 ----------------RQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFH 157
+G +V LN+ G PLRPG CSYYM CKFG+ CKFH
Sbjct: 151 PQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFH 210
Query: 158 HPQ 160
HP
Sbjct: 211 HPN 213
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 52/107 (48%), Gaps = 20/107 (18%)
Query: 32 GVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDR--------------------G 71
G +P+RP E DC+HY+R G C YG CRFNHP DR
Sbjct: 111 GCDKLEHPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGK 170
Query: 72 SVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG 118
S + P R G +C YYM G CK+G++CK+HHP G+G
Sbjct: 171 SEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSG 217
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPR 328
P RPG C YYM G CKFGS+C+FHHP
Sbjct: 183 LPLRPGTGLCSYYMNRGICKFGSNCKFHHPN 213
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 20/70 (28%)
Query: 299 PERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKM--------------------DVT 338
P+RPG+ +C +Y++ G CK+G +CRF+HP + + + V
Sbjct: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
Query: 339 LSPFGLPLRP 348
L+ GLPLRP
Sbjct: 178 LNFLGLPLRP 187
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHP 327
+P RPG +C YY++ G CKFG C ++HP
Sbjct: 76 YPRRPGVPDCSYYVEFGSCKFGMRCLYNHP 105
>sp|Q3ECU8|C3H13_ARATH Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis
thaliana GN=At1g48195 PE=4 SV=1
Length = 82
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%)
Query: 83 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 142
+FPER G+P C YY+RTG C +CKYHHP+ S +LN G PLRPG+ C +Y
Sbjct: 5 KFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHY 64
Query: 143 MKTRQCKFGATCKFHH 158
+ C+ G TCKF H
Sbjct: 65 SRFGICRSGPTCKFDH 80
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 33 VGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPV 92
+ E +PERP E +C +Y+RTG C C+++HP++ P R GQ +
Sbjct: 1 MSEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAI 60
Query: 93 CQYYMRTGTCKYGASCKYHH 112
C +Y R G C+ G +CK+ H
Sbjct: 61 CPHYSRFGICRSGPTCKFDH 80
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 295 EHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRP 348
E FPERPG+ EC YY++TG+C +C++HHP+ + + TL+ GLPLRP
Sbjct: 3 EEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRP 56
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 130 YPLRPGEKECSYYMKTRQCKFGATCKFHHPQ 160
+P RPGE ECSYY++T C CK+HHP+
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPK 36
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 283 PSSVGPSS--SSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHH 326
P ++ PS + + P RPGQ C +Y + G C+ G +C+F H
Sbjct: 35 PKNITPSEPQCTLNDKGLPLRPGQAICPHYSRFGICRSGPTCKFDH 80
>sp|Q9C7P4|C3H9_ARATH Putative zinc finger CCCH domain-containing protein 9
OS=Arabidopsis thaliana GN=At1g29570 PE=4 SV=1
Length = 321
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 10/51 (19%)
Query: 297 PFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLR 347
P+P RPG+++CQ+Y+K G C++ SSCRF+HP T P LP+R
Sbjct: 51 PYPVRPGKKDCQFYLKNGLCRYRSSCRFNHP----------TQRPQELPVR 91
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 130 YPLRPGEKECSYYMKTRQCKFGATCKFHHP--QPAGVPA 166
YP+RPG+K+C +Y+K C++ ++C+F+HP +P +P
Sbjct: 52 YPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPV 90
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHP 67
YP RP + DC Y++ G C Y S CRFNHP
Sbjct: 52 YPVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHP 113
+P R G+ CQ+Y++ G C+Y +SC+++HP
Sbjct: 52 YPVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81
>sp|Q9C7P1|C3H10_ARATH Putative zinc finger CCCH domain-containing protein 10
OS=Arabidopsis thaliana GN=At1g29600/At1g29610 PE=2 SV=2
Length = 389
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 74/201 (36%), Gaps = 34/201 (16%)
Query: 33 VGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPV 92
V + +YP RP E +C+ Y++ C +GS C +NHP E P R+G+ +
Sbjct: 123 VLSSAYPVRPGEDNCLFYMKNHLCEWGSECCYNHP------------PLQEIPCRIGKKL 170
Query: 93 CQYYMRTGTCKYGASCKYHHPRQGAGS------------VSNVSLNYYGYPLRP----GE 136
+ G CK G++C ++HP++ G N S Y R E
Sbjct: 171 ---DCKAGACKRGSNCPFNHPKERDGDSLPMPQGRTPDLRRNDSGRRYNTESRSWPENKE 227
Query: 137 KECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSV 196
KE + + K A +P V S +P A + S
Sbjct: 228 KEVGQFRDHQDSKEDAQEVLLQQRPRDVEMRKRSRSPDFRA---KTETKEHREAEERSSR 284
Query: 197 PSAQQYGVVVARPPLLHGSYV 217
SA G V + L +YV
Sbjct: 285 ESATATGKVSGKENELRPTYV 305
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHP 327
+P RPG+ C +YMK C++GS C ++HP
Sbjct: 128 YPVRPGEDNCLFYMKNHLCEWGSECCYNHP 157
>sp|A3CEM4|C3H64_ORYSJ Putative zinc finger CCCH domain-containing protein 64 OS=Oryza
sativa subsp. japonica GN=Os12g0129500 PE=4 SV=2
Length = 527
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 83 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ 115
++PER G+P C+YYM+ G CK+ CKY+HP+
Sbjct: 209 QYPERPGEPFCRYYMKFGECKHMTFCKYNHPKD 241
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPL 346
+PERPG+ C+YYMK G+CK + C+++HP++ K T+ L L
Sbjct: 210 YPERPGEPFCRYYMKFGECKHMTFCKYNHPKDRFSCKTTNTIRSESLCL 258
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGS 72
YPERP E C +Y++ G C + + C++NHP+DR S
Sbjct: 210 YPERPGEPFCRYYMKFGECKHMTFCKYNHPKDRFS 244
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 130 YPLRPGEKECSYYMKTRQCKFGATCKFHHPQ 160
YP RPGE C YYMK +CK CK++HP+
Sbjct: 210 YPERPGEPFCRYYMKFGECKHMTFCKYNHPK 240
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 18/111 (16%)
Query: 90 QPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCK 149
Q C+Y+M G CK G +C+Y H + S C YY + C
Sbjct: 54 QVTCRYFMH-GVCKKGNNCRYSHDLSTSQSAMV----------------CRYYQRG-CCA 95
Query: 150 FGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQ 200
+G C++ H +P T + + +P PAL PL S A+
Sbjct: 96 YGDRCRYEHTKPLKREEVTAANLAAKSDLPASSSLPALVEPLAEVSTGEAE 146
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 17/66 (25%)
Query: 49 HYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASC 108
Y G C G+ CR++H D + A VC+YY R G C YG C
Sbjct: 58 RYFMHGVCKKGNNCRYSH--DLSTSQSAM--------------VCRYYQR-GCCAYGDRC 100
Query: 109 KYHHPR 114
+Y H +
Sbjct: 101 RYEHTK 106
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 47 CIHYVRTGFCAYGSRCRFNH--PRDRGSVMGAARAGGGEFP 85
C +Y R G CAYG RCR+ H P R V A A + P
Sbjct: 86 CRYYQR-GCCAYGDRCRYEHTKPLKREEVTAANLAAKSDLP 125
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 29/104 (27%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 151
C+Y+M G CK G +C+Y H + +P C ++ K C FG
Sbjct: 23 TCRYFMH-GLCKEGDNCRYSHDLTNS---------------KPAAMICKFFQKG-NCVFG 65
Query: 152 ATCKFHHPQPAG---VPAPTPSPAPQVAAV---------PTPVP 183
C+F H +PA +PAP P P + PTPVP
Sbjct: 66 DRCRFEHCKPAKNEELPAPQMLPLPSASLAGPSDPEPSGPTPVP 109
>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens
GN=ZC3H6 PE=2 SV=2
Length = 1189
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 44/161 (27%)
Query: 2 ERHGRVSEG----SQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCA 57
ER GR ++G S SD E+ PG + + E + C +++ G C
Sbjct: 229 ERGGRTNKGPNVFSVSDDFQEYNKPGKKWKVMTQEFINQHTVEHKGKQICKYFLE-GRCI 287
Query: 58 YGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGA 117
G +C+F+H E +R + +C++Y++ G C G +C Y H
Sbjct: 288 KGDQCKFDH--------------DAELEKR--KEICKFYLQ-GYCTKGENCIYMH----- 325
Query: 118 GSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 158
E C +Y +C G CKF H
Sbjct: 326 -----------------NEFPCKFYHSGAKCYQGDNCKFSH 349
>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=YTH1 PE=3 SV=1
Length = 332
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 22/124 (17%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGA 106
C HY+R C G C + H +F R PVC ++++ G C+ G
Sbjct: 99 CKHYLRN-LCKMGDNCEYTH----------------DFNLRT-MPVCIWFVKQGKCELGG 140
Query: 107 SCKYHHPRQGAGSVSNVSLNYY----GYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 162
C Y HPR + + + P + + C G CK HP P
Sbjct: 141 ECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAAGFCPDGKDCKLAHPSPN 200
Query: 163 GVPA 166
PA
Sbjct: 201 RPPA 204
>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
Length = 332
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 22/124 (17%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGA 106
C HY+R C G C + H +F R PVC ++++ G C+ G
Sbjct: 99 CKHYLRN-LCKMGDNCEYTH----------------DFNLRT-MPVCIWFVKQGKCELGG 140
Query: 107 SCKYHHPRQGAGSVSNVSLNYY----GYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 162
C Y HPR + + + P + + C G CK HP P
Sbjct: 141 ECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAAGFCPDGKDCKLAHPSPN 200
Query: 163 GVPA 166
PA
Sbjct: 201 RPPA 204
>sp|Q8GW05|C3H47_ORYSJ Zinc finger CCCH domain-containing protein 47 OS=Oryza sativa
subsp. japonica GN=Os07g0138400 PE=2 SV=1
Length = 388
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 52 RTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYH 111
R G C G+ CR++H + ++ R GGG G+P + G C+YG +CKY
Sbjct: 331 RKGRCHNGAACRYSHGEEEQRIVPEMRVGGG------GRPCPELAAAKGWCRYGLNCKYC 384
Query: 112 H 112
H
Sbjct: 385 H 385
>sp|Q0JP11|C3H3_ORYSJ Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp.
japonica GN=Os01g0252200 PE=2 SV=2
Length = 167
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 19/21 (90%)
Query: 92 VCQYYMRTGTCKYGASCKYHH 112
VCQ+++RTGTCK+G SC+Y H
Sbjct: 68 VCQHFVRTGTCKFGDSCRYFH 88
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 307 CQYYMKTGDCKFGSSCRFHH 326
CQ++++TG CKFG SCR+ H
Sbjct: 69 CQHFVRTGTCKFGDSCRYFH 88
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 47 CIHYVRTGFCAYGSRCRFNH 66
C H+VRTG C +G CR+ H
Sbjct: 69 CQHFVRTGTCKFGDSCRYFH 88
>sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=yth-1 PE=3 SV=1
Length = 317
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 79 AGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKE 138
GG F G VC++++R G CK G SC++ H Y LR E
Sbjct: 85 GGGNTFSGGFGSLVCKHWLR-GLCKKGESCEFLHE----------------YNLRK-MPE 126
Query: 139 CSYYMKTRQCKFGATCKFHHPQPAGVPAPTP 169
C+++++ C G C + H P P P
Sbjct: 127 CNFFVRNGYCSNGDECLYLHIDPLSRLPPCP 157
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 18/66 (27%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGA 106
C H++R G C G C F H E+ R P C +++R G C G
Sbjct: 99 CKHWLR-GLCKKGESCEFLH----------------EYNLRK-MPECNFFVRNGYCSNGD 140
Query: 107 SCKYHH 112
C Y H
Sbjct: 141 ECLYLH 146
>sp|Q9H000|MKRN2_HUMAN Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens
GN=MKRN2 PE=2 SV=2
Length = 416
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 92/254 (36%), Gaps = 53/254 (20%)
Query: 90 QPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCK 149
Q C+Y+M G C+ G+ C + H + +P C YY K C
Sbjct: 5 QITCRYFMH-GVCREGSQCLFSHDLANS---------------KPSTI-CKYYQKG-YCA 46
Query: 150 FGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARP 209
+G C++ H +P+ V + VP+PA + SP PS +V
Sbjct: 47 YGTRCRYDHTRPSAAAGGA------VGTMAHSVPSPAFH----SPHPPSEVTASIVKT-- 94
Query: 210 PLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLS 269
S+ G + +L G + T + +S+PG+ +
Sbjct: 95 ----NSHEPGKREKRTLVLRDRNLSGMAERKTQPSMVSNPGSCSDPQPSPE--------- 141
Query: 270 ASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRE 329
+Y +S V SSS E QQ C Y G+C+FG +C + H
Sbjct: 142 MKPHSYLDAIRSGLDDVEASSSYSNE--------QQLCPY-AAAGECRFGDACVYLHGEV 192
Query: 330 LIVPKMDVTLSPFG 343
+ ++ V L PF
Sbjct: 193 CEICRLQV-LHPFD 205
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 50 YVRTGFCAYGSRCRFNHPRDRGSVMGAA 77
Y + G+CAYG+RCR++H R + GA
Sbjct: 39 YYQKGYCAYGTRCRYDHTRPSAAAGGAV 66
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 17/70 (24%)
Query: 50 YVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCK 109
Y G C GS+C F+H + +C+YY + G C YG C+
Sbjct: 10 YFMHGVCREGSQCLFSH----------------DLANSKPSTICKYYQK-GYCAYGTRCR 52
Query: 110 YHHPRQGAGS 119
Y H R A +
Sbjct: 53 YDHTRPSAAA 62
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTR 146
R +C+ + +G C+YGA C++ H G G + S +P E +Y++ R
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAH---GLGELRQASR----HPKYKTELCHKFYLQGR 153
Query: 147 QCKFGATCKFHHPQPAGVPAP 167
C +G+ C F H + AP
Sbjct: 154 -CPYGSRCHFIHNPSEDLAAP 173
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGA 106
C + +G C YG++C+F H G + A+R + +C + G C YG+
Sbjct: 107 CRTFSESGRCRYGAKCQFAH--GLGELRQASRH------PKYKTELCHKFYLQGRCPYGS 158
Query: 107 SCKY-HHPRQGAGS-----VSNVSLNYYGYP 131
C + H+P + + V S+++ G P
Sbjct: 159 RCHFIHNPSEDLAAPGHPHVLRQSISFSGLP 189
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens
GN=ZC3H3 PE=1 SV=3
Length = 948
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGS-----VMGAARAGGGEFP-----ERVGQPVCQYY 96
C++Y R G C G RC + H ++ + V G + G P + PVC Y+
Sbjct: 673 CMYYNRFGRCNRGERCPYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYF 732
Query: 97 MRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKF 156
++ G C ++C Y H Y R E CS ++K C GA CK
Sbjct: 733 LK-GIC-SNSNCPYSH----------------VYVSRKAE-VCSDFLKG-YCPLGAKCKK 772
Query: 157 HH 158
H
Sbjct: 773 KH 774
>sp|B0F0H3|MKRN2_XENLA Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis
GN=mkrn2 PE=2 SV=2
Length = 409
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 42 PDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGT 101
P + C +++ G C GSRC F+H + VC++++R G
Sbjct: 3 PKQVTCRYFLH-GVCREGSRCLFSH----------------DLATSKPSTVCRFFLR-GQ 44
Query: 102 CKYGASCKYHHPRQGAGSV 120
C YG C+Y H + G+V
Sbjct: 45 CAYGTRCRYDHVKPCNGTV 63
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 30/108 (27%)
Query: 90 QPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCK 149
Q C+Y++ G C+ G+ C + H S V C ++++ QC
Sbjct: 5 QVTCRYFLH-GVCREGSRCLFSHDL-ATSKPSTV---------------CRFFLRG-QCA 46
Query: 150 FGATCKFHHPQPAG----VP----APTPSPAP----QVAAVPTPVPAP 185
+G C++ H +P +P +P SP P Q AAVP +PAP
Sbjct: 47 YGTRCRYDHVKPCNGTVFIPPQEMSPVLSPPPLFPAQEAAVPPTIPAP 94
>sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YTH1 PE=3
SV=2
Length = 255
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 28/128 (21%)
Query: 42 PDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGT 101
PD C + ++G C G+RC H D + ++ GG + VC++++R G
Sbjct: 38 PDRPVCKAF-QSGHCPNGTRCPERHVSDSKT----SQPTGG-----LNSLVCKHWLR-GL 86
Query: 102 CKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161
CK G C++ H Y LR EC+++M+ C G C + H P
Sbjct: 87 CKKGEHCEFLHE----------------YNLR-KMPECNFFMRNGYCSNGDECLYLHIDP 129
Query: 162 AGVPAPTP 169
P P
Sbjct: 130 QSRLPPCP 137
>sp|Q6C922|YTH1_YARLI mRNA 3'-end-processing protein YTH1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YTH1 PE=3 SV=1
Length = 193
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 46/127 (36%), Gaps = 30/127 (23%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGA 106
C H++R G C G C F H + + P CQ+Y++ G C
Sbjct: 60 CKHWLR-GLCKKGLNCEFLHEYNLQKM-----------------PECQFYVKNGFCTQSP 101
Query: 107 SCKYHHPRQGAGSVSNVSLNYYGYPLRPG---------EKECSYYMKTRQCKFGATCKFH 157
C+Y H S V NY + G C YM T C G C+F
Sbjct: 102 DCQYLHI--DPASKIPVCFNYEKGFCKMGPECSRKHIRRMPCELYM-TGFCPKGRVCEFA 158
Query: 158 HPQPAGV 164
HP+ G+
Sbjct: 159 HPKFVGI 165
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 151
+C+ + +G C+YGA C++ H G G + + +P E +Y++ R C +G
Sbjct: 108 LCRTFSESGRCRYGAKCQFAH---GLGELRQANR----HPKYKTELCHKFYLQGR-CPYG 159
Query: 152 ATCKFHH 158
+ C F H
Sbjct: 160 SRCHFIH 166
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 24/96 (25%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQP-----VCQYYMRTGT 101
C + +G C YG++C+F H G GE + P +C + G
Sbjct: 109 CRTFSESGRCRYGAKCQFAH-------------GLGELRQANRHPKYKTELCHKFYLQGR 155
Query: 102 CKYGASCKY-HHPRQGAGS-----VSNVSLNYYGYP 131
C YG+ C + H+P + + V S+++ G P
Sbjct: 156 CPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLP 191
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTR 146
R +C+ Y +G C+YGA C++ H G G + + +P E +Y++ R
Sbjct: 96 RYKTELCRTYSESGRCRYGAKCQFAH---GPGELRQANR----HPKYKTELCHKFYLQGR 148
Query: 147 QCKFGATCKFHH 158
C +G+ C F H
Sbjct: 149 -CPYGSRCHFIH 159
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 24/96 (25%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQP-----VCQYYMRTGT 101
C Y +G C YG++C+F H G GE + P +C + G
Sbjct: 102 CRTYSESGRCRYGAKCQFAH-------------GPGELRQANRHPKYKTELCHKFYLQGR 148
Query: 102 CKYGASCKY-HHPRQ-----GAGSVSNVSLNYYGYP 131
C YG+ C + H+P + G V S+++ G P
Sbjct: 149 CPYGSRCHFIHNPTEDLALPGQPHVLRQSISFSGLP 184
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTR 146
R +C+ + +G C+YGA C++ H G G + S +P E +Y++ R
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAH---GLGELRQPSR----HPKYKTELCHKFYLQGR 153
Query: 147 QCKFGATCKFHHPQPAGVPAP 167
C +G+ C F H + AP
Sbjct: 154 -CPYGSRCHFIHNPSEDLAAP 173
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 24/96 (25%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQP-----VCQYYMRTGT 101
C + +G C YG++C+F H G GE + P +C + G
Sbjct: 107 CRTFSESGRCRYGAKCQFAH-------------GLGELRQPSRHPKYKTELCHKFYLQGR 153
Query: 102 CKYGASCKY-HHPRQGAGS-----VSNVSLNYYGYP 131
C YG+ C + H+P + + V S+++ G P
Sbjct: 154 CPYGSRCHFIHNPSEDLAAPGHPHVLRQSISFSGLP 189
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 17/70 (24%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 151
C+Y+M G CK G +C+Y H + +P C ++ K C FG
Sbjct: 23 TCRYFMH-GLCKEGDNCRYSHDLTNS---------------KPAAMICKFFQKG-NCVFG 65
Query: 152 ATCKFHHPQP 161
C+F H +P
Sbjct: 66 ERCRFDHCKP 75
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 91/268 (33%), Gaps = 56/268 (20%)
Query: 93 CQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYG----------YPLRPGE------ 136
C + T C +G+SC + H G G + + +G PL PG
Sbjct: 38 CTKFFSTSGCPFGSSCHFLHNFPG-GYQAAAKMTSHGGTAVAAPPGRMPLGPGAPNGPPT 96
Query: 137 -----KECSYYMKTRQCKFGATCKFHHPQ-----PAGVPAPTPSPAPQVAAVPTPVPAPA 186
+ C+ Y CK+G+ C F H + P + P P + P+P P
Sbjct: 97 SSVKTRMCNKYNTAEGCKWGSKCHFAHGERELGKPMLLDNSMPHPMGSMPFEAPPMPGPD 156
Query: 187 LYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYAT----- 241
+ PP +G + S G G + S + A
Sbjct: 157 IVPP---------STFGASATAKISVDASLAGGIIGKGGTNTKHISRMTGAKLAIRDNES 207
Query: 242 --SLNPISSPGTGTQSSVGSSSIYG-ITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPF 298
+L I GT Q S+ + I ++S +AP + + GP S+ +
Sbjct: 208 NPNLKNIELEGTFDQIKHASAMVTELIVRISGNAPPAKNPGRGSHAG-GPGSNFK----- 261
Query: 299 PERPGQQECQYYMKTGDCKFGSSCRFHH 326
+ C+ + K G C FG C F H
Sbjct: 262 -----TKLCENFNK-GSCTFGDRCHFAH 283
>sp|Q9DFG8|MKRN2_DANRE Probable E3 ubiquitin-protein ligase makorin-2 OS=Danio rerio
GN=mkrn2 PE=2 SV=2
Length = 414
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 20/73 (27%)
Query: 50 YVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCK 109
Y G C GSRC F+H + +C+YY R G C YG C+
Sbjct: 10 YFLHGVCREGSRCLFSH----------------DLTTSKPSTICKYYQR-GACAYGDRCR 52
Query: 110 YHH---PRQGAGS 119
Y H P +G+G+
Sbjct: 53 YDHIKPPGRGSGA 65
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 24/96 (25%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQP-----VCQYYMRTGT 101
C Y +G C YG++C+F H G GE + P +C + G
Sbjct: 101 CRTYSESGRCRYGAKCQFAH-------------GLGELRQANRHPKYKTELCHKFYLQGR 147
Query: 102 CKYGASCKY-HHPRQ-----GAGSVSNVSLNYYGYP 131
C YG+ C + H+P + G V S+++ G P
Sbjct: 148 CPYGSRCHFIHNPTEDLALPGQPHVLRQSISFSGLP 183
>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa
subsp. japonica GN=Os06g0677700 PE=2 SV=1
Length = 665
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 39/112 (34%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGA 106
C H++R G C G C F H D+ + PVC+++ G C+
Sbjct: 64 CRHWLR-GLCMKGEACGFLHQFDKARM-----------------PVCRFFRDFGECRE-P 104
Query: 107 SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 158
C Y H S +V KEC+ Y K C G C++ H
Sbjct: 105 DCAYKH------SYDDV-------------KECNMY-KMGFCPNGPNCRYKH 136
>sp|Q9ERV1|MKRN2_MOUSE Probable E3 ubiquitin-protein ligase makorin-2 OS=Mus musculus
GN=Mkrn2 PE=2 SV=2
Length = 416
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 17/65 (26%)
Query: 50 YVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCK 109
Y G C GS+C F+H + +C+YY + G C YGA C+
Sbjct: 10 YFMHGVCREGSQCLFSH----------------DLANSKPSTICKYYQK-GYCAYGARCR 52
Query: 110 YHHPR 114
Y H +
Sbjct: 53 YDHTK 57
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTR 146
R +C+ + +GTCKYG C++ H S++ +P E C +
Sbjct: 153 RYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTR-------HPKYKTEL-CRTFHTIG 204
Query: 147 QCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPT 180
C +G C F H PAP+ + + A T
Sbjct: 205 FCPYGPRCHFIHNADERRPAPSGGASGDLRAFGT 238
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
GN=Zc3h3 PE=2 SV=1
Length = 950
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 30/122 (24%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGS-----VMGAARAGGGEFP-----ERVGQPVCQYY 96
C++Y R G C G C + H ++ + V G + G P + PVC Y+
Sbjct: 668 CMYYNRFGRCNRGECCPYIHDPEKVAVCTRFVRGTCKKTDGSCPFSHHVSKEKMPVCSYF 727
Query: 97 MRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKF 156
++ G C ++C Y H Y R E CS ++K C GA CK
Sbjct: 728 LK-GICS-NSNCPYSHV----------------YVSRKAE-VCSDFLKG-YCPLGAKCKK 767
Query: 157 HH 158
H
Sbjct: 768 KH 769
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,713,291
Number of Sequences: 539616
Number of extensions: 8080734
Number of successful extensions: 57832
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 1061
Number of HSP's that attempted gapping in prelim test: 40031
Number of HSP's gapped (non-prelim): 12149
length of query: 364
length of database: 191,569,459
effective HSP length: 119
effective length of query: 245
effective length of database: 127,355,155
effective search space: 31202012975
effective search space used: 31202012975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)