Query 017879
Match_columns 364
No_of_seqs 291 out of 1575
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677 CCCH-type Zn-finger pr 99.9 1.1E-25 2.3E-30 219.9 17.9 153 10-164 46-205 (332)
2 KOG1677 CCCH-type Zn-finger pr 99.6 3.6E-14 7.8E-19 138.9 13.9 83 33-117 121-204 (332)
3 KOG1040 Polyadenylation factor 99.1 5.8E-11 1.2E-15 117.5 2.9 86 40-161 73-158 (325)
4 KOG1040 Polyadenylation factor 98.7 2E-08 4.4E-13 99.5 7.5 98 31-161 30-130 (325)
5 KOG1492 C3H1-type Zn-finger pr 98.6 4.1E-08 8.9E-13 92.9 4.3 103 41-164 203-316 (377)
6 KOG1039 Predicted E3 ubiquitin 98.6 5.5E-08 1.2E-12 97.2 4.9 60 280-345 222-285 (344)
7 KOG2494 C3H1-type Zn-finger pr 98.5 7E-08 1.5E-12 95.0 3.8 101 45-161 38-154 (331)
8 COG5063 CTH1 CCCH-type Zn-fing 98.4 3.6E-07 7.8E-12 89.3 5.5 103 45-162 231-340 (351)
9 COG5084 YTH1 Cleavage and poly 98.3 5.9E-07 1.3E-11 87.7 5.4 88 43-163 103-192 (285)
10 PF00642 zf-CCCH: Zinc finger 98.3 1.2E-07 2.5E-12 61.4 0.0 26 88-113 1-26 (27)
11 PF00642 zf-CCCH: Zinc finger 98.3 1.2E-07 2.6E-12 61.4 -0.1 26 42-67 1-26 (27)
12 COG5084 YTH1 Cleavage and poly 98.2 1E-05 2.2E-10 79.1 9.7 89 41-161 71-159 (285)
13 KOG4791 Uncharacterized conser 97.9 5.8E-06 1.3E-10 85.1 2.8 81 45-161 4-85 (667)
14 KOG1595 CCCH-type Zn-finger pr 97.8 0.00011 2.5E-09 76.6 10.6 87 54-164 207-295 (528)
15 COG5063 CTH1 CCCH-type Zn-fing 97.8 3.4E-05 7.4E-10 75.8 6.1 120 37-164 146-302 (351)
16 KOG2494 C3H1-type Zn-finger pr 97.8 1E-05 2.2E-10 80.0 2.1 58 90-162 37-95 (331)
17 smart00356 ZnF_C3H1 zinc finge 97.8 1.8E-05 4E-10 50.0 2.4 25 88-113 2-26 (27)
18 smart00356 ZnF_C3H1 zinc finge 97.7 2.7E-05 5.9E-10 49.2 2.6 25 42-67 2-26 (27)
19 KOG1763 Uncharacterized conser 97.3 6.1E-05 1.3E-09 73.7 0.6 80 86-166 88-196 (343)
20 KOG2333 Uncharacterized conser 97.3 7.2E-05 1.6E-09 77.6 0.7 60 89-158 75-136 (614)
21 KOG1763 Uncharacterized conser 97.2 7.5E-05 1.6E-09 73.1 -0.2 79 38-117 86-193 (343)
22 KOG1492 C3H1-type Zn-finger pr 97.0 0.0004 8.6E-09 66.2 2.9 91 44-161 233-335 (377)
23 KOG2333 Uncharacterized conser 97.0 0.00022 4.8E-09 74.1 1.2 60 43-112 75-136 (614)
24 KOG4791 Uncharacterized conser 97.0 0.00074 1.6E-08 70.0 4.4 106 43-167 31-148 (667)
25 KOG2185 Predicted RNA-processi 96.7 0.0011 2.5E-08 67.5 2.8 58 57-115 97-164 (486)
26 KOG1595 CCCH-type Zn-finger pr 96.5 0.00099 2.1E-08 69.8 1.6 59 45-118 237-295 (528)
27 COG5252 Uncharacterized conser 96.4 0.001 2.2E-08 63.7 0.3 79 37-116 78-177 (299)
28 COG5252 Uncharacterized conser 96.3 0.00091 2E-08 64.0 -0.4 79 86-165 81-180 (299)
29 KOG2185 Predicted RNA-processi 96.2 0.0028 6E-08 64.7 2.4 32 131-163 135-166 (486)
30 PF14608 zf-CCCH_2: Zinc finge 96.0 0.0045 9.7E-08 37.1 1.6 19 92-113 1-19 (19)
31 KOG3702 Nuclear polyadenylated 96.0 0.014 3.1E-07 62.6 6.5 104 45-167 545-652 (681)
32 PF14608 zf-CCCH_2: Zinc finge 95.8 0.0057 1.2E-07 36.6 1.6 19 138-159 1-19 (19)
33 COG5152 Uncharacterized conser 94.7 0.01 2.2E-07 55.8 0.5 27 90-116 141-167 (259)
34 COG5152 Uncharacterized conser 94.6 0.011 2.4E-07 55.5 0.6 29 43-71 140-168 (259)
35 KOG3702 Nuclear polyadenylated 93.6 0.19 4.2E-06 54.2 7.3 91 37-161 571-666 (681)
36 KOG2202 U2 snRNP splicing fact 91.0 0.038 8.3E-07 53.5 -1.5 29 134-163 150-178 (260)
37 KOG1813 Predicted E3 ubiquitin 90.6 0.078 1.7E-06 52.5 0.1 27 90-116 186-212 (313)
38 KOG1039 Predicted E3 ubiquitin 89.6 0.13 2.7E-06 52.1 0.7 25 137-162 9-33 (344)
39 KOG1813 Predicted E3 ubiquitin 89.5 0.11 2.3E-06 51.5 0.1 28 44-71 186-213 (313)
40 PF10650 zf-C3H1: Putative zin 81.6 0.95 2.1E-05 28.6 1.4 22 91-113 1-22 (23)
41 PF10650 zf-C3H1: Putative zin 79.3 1.2 2.6E-05 28.2 1.3 22 45-67 1-22 (23)
42 KOG0153 Predicted RNA-binding 76.6 1.9 4.1E-05 43.8 2.6 34 35-69 152-185 (377)
43 KOG2202 U2 snRNP splicing fact 68.8 2.2 4.7E-05 41.7 0.9 29 40-69 148-176 (260)
44 KOG0153 Predicted RNA-binding 67.4 3.2 6.8E-05 42.3 1.7 30 133-163 158-187 (377)
45 KOG2135 Proteins containing th 21.3 38 0.00082 36.1 0.6 36 36-71 204-239 (526)
No 1
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=219.89 Aligned_cols=153 Identities=38% Similarity=0.740 Sum_probs=117.4
Q ss_pred CCCCCCCCCCCCCCCCCCccccCC------CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCC
Q 017879 10 GSQSDPSPEWTAPGTETGPEGLGV------GAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGE 83 (364)
Q Consensus 10 ~~~~~~~~~w~~~~~~~~~~~~~~------~~~~~P~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~ 83 (364)
...++...+|.............+ ....||+++.+.+|.+|++++.|.+++.|+++|+..+.......+.....
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~ 125 (332)
T KOG1677|consen 46 STRSDNSKQPSELAAEDSSPGTELEQLRTPGSSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGER 125 (332)
T ss_pred CcccccccCcccccccccCcccccchhcccccCcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCcccccccc
Confidence 344566666665422222222222 34569999999999999999999999999999997443332211123457
Q ss_pred CCCCcCCcccccccccCCCCC-CCCCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCCC
Q 017879 84 FPERVGQPVCQYYMRTGTCKY-GASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 162 (364)
Q Consensus 84 ~Per~k~~~Cr~flktG~Ck~-G~~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~ 162 (364)
.+++.++++|++|.++|.|+| |++|+|+|..++.+... .++..+.+.+.++++|.+|++||.|+||++|+|+|+...
T Consensus 126 ~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~ 203 (332)
T KOG1677|consen 126 KPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPE 203 (332)
T ss_pred CcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcc
Confidence 899999999999999999999 99999999988764322 456677888999999999999999999999999999985
Q ss_pred CC
Q 017879 163 GV 164 (364)
Q Consensus 163 ~~ 164 (364)
..
T Consensus 204 ~~ 205 (332)
T KOG1677|consen 204 DR 205 (332)
T ss_pred cc
Confidence 54
No 2
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.56 E-value=3.6e-14 Score=138.85 Aligned_cols=83 Identities=28% Similarity=0.626 Sum_probs=69.6
Q ss_pred CCCCCCCCCCCCccccccccCCCCCC-CCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCC
Q 017879 33 VGAESYPERPDEADCIHYVRTGFCAY-GSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYH 111 (364)
Q Consensus 33 ~~~~~~P~Rp~~~~C~yflrtG~C~~-G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFs 111 (364)
......|++.++++|.+|.++|.|+| |++|+|.|..++.+... .......+.++|+++|.+|+++|.|+||.+|+|+
T Consensus 121 ~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~ 198 (332)
T KOG1677|consen 121 SRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFI 198 (332)
T ss_pred cccccCcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeec
Confidence 35678999999999999999999999 99999999998875211 0112356678999999999999999999999999
Q ss_pred CCCCCC
Q 017879 112 HPRQGA 117 (364)
Q Consensus 112 H~~~~~ 117 (364)
|...+.
T Consensus 199 H~~~~~ 204 (332)
T KOG1677|consen 199 HGEPED 204 (332)
T ss_pred CCCccc
Confidence 987754
No 3
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.06 E-value=5.8e-11 Score=117.50 Aligned_cols=86 Identities=29% Similarity=0.730 Sum_probs=71.6
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCCCCC
Q 017879 40 ERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGS 119 (364)
Q Consensus 40 ~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~ 119 (364)
+..++.+|+||++ |.|++||.|.|+|..+. .+.+.|.||..+|.|..+..|.|.|.....
T Consensus 73 ~~~~~~vcK~~l~-glC~kgD~C~Flhe~~~-----------------~k~rec~ff~~~g~c~~~~~c~y~h~dpqt-- 132 (325)
T KOG1040|consen 73 DSRGKVVCKHWLR-GLCKKGDQCEFLHEYDL-----------------TKMRECKFFSLFGECTNGKDCPYLHGDPQT-- 132 (325)
T ss_pred ccCCceeehhhhh-hhhhccCcCcchhhhhh-----------------cccccccccccccccccccCCcccCCChhh--
Confidence 4667889999997 99999999999998743 245689999999999999999999976311
Q ss_pred cCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCC
Q 017879 120 VSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (364)
Q Consensus 120 ~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~ 161 (364)
..++|.+|.+ |+|+.|..|++.|-..
T Consensus 133 ---------------~~k~c~~~~~-g~c~~g~~c~~~h~~~ 158 (325)
T KOG1040|consen 133 ---------------AIKKCKWYKE-GFCRGGPSCKKRHERK 158 (325)
T ss_pred ---------------hhhccchhhh-ccCCCcchhhhhhhcc
Confidence 2357888887 8999899999988877
No 4
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.74 E-value=2e-08 Score=99.55 Aligned_cols=98 Identities=24% Similarity=0.593 Sum_probs=77.2
Q ss_pred cCCCCCCCC--CCCCCccccccccC-CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCC
Q 017879 31 LGVGAESYP--ERPDEADCIHYVRT-GFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGAS 107 (364)
Q Consensus 31 ~~~~~~~~P--~Rp~~~~C~yflrt-G~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~ 107 (364)
.++....+. ++.+...|.++.+. -.|.+|..|.+.|...+ +..++.+|+||++ |.|+.|+.
T Consensus 30 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~vcK~~l~-glC~kgD~ 93 (325)
T KOG1040|consen 30 PGASLAPFRVRDESGRATCEFNESREKPCERGPICPKSHNDVS---------------DSRGKVVCKHWLR-GLCKKGDQ 93 (325)
T ss_pred ccccccccccccccccchhcccccCCCCccCCCCCccccCCcc---------------ccCCceeehhhhh-hhhhccCc
Confidence 455555555 44557889988731 47999999999997642 1246789999999 99999999
Q ss_pred CCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCC
Q 017879 108 CKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (364)
Q Consensus 108 CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~ 161 (364)
|-|+|..+.. +.++|.||..+|.|..|.+|.|.|.++
T Consensus 94 C~Flhe~~~~-----------------k~rec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 94 CEFLHEYDLT-----------------KMRECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred Ccchhhhhhc-----------------ccccccccccccccccccCCcccCCCh
Confidence 9999976322 235799999999999999999999997
No 5
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.58 E-value=4.1e-08 Score=92.91 Aligned_cols=103 Identities=27% Similarity=0.609 Sum_probs=74.7
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCCcccc-----cc-CC-----CCCCCCCcCCcccccccccCCCCCCCCCC
Q 017879 41 RPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGA-----AR-AG-----GGEFPERVGQPVCQYYMRTGTCKYGASCK 109 (364)
Q Consensus 41 Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~-----~r-~~-----~~~~Per~k~~~Cr~flktG~Ck~G~~Ck 109 (364)
.|....|+||...|.|.+|..|+|.|...+..++.. +. .. .+..|. ..+.|+||+- |.|. ..+|+
T Consensus 203 spsavycryynangicgkgaacrfvheptrkticpkflngrcnkaedcnlsheldpr--ripacryfll-gkcn-npncr 278 (377)
T KOG1492|consen 203 SPSAVYCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPR--RIPACRYFLL-GKCN-NPNCR 278 (377)
T ss_pred CCceeEEEEecCCCcccCCceeeeeccccccccChHHhcCccCchhcCCcccccCcc--ccchhhhhhh-ccCC-CCCce
Confidence 345678999999999999999999998887654321 11 00 112232 4567888887 8886 46788
Q ss_pred CCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCCCCC
Q 017879 110 YHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGV 164 (364)
Q Consensus 110 FsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~~~ 164 (364)
|.|-.-.. ..++|..|.+.|+|..|..|+-.|......
T Consensus 279 yvhihyse-----------------napicfefakygfcelgtscknqhilqctd 316 (377)
T KOG1492|consen 279 YVHIHYSE-----------------NAPICFEFAKYGFCELGTSCKNQHILQCTD 316 (377)
T ss_pred EEEEeecC-----------------CCceeeeehhcceeccccccccceeeeecc
Confidence 88843211 236899999999999999999999887654
No 6
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.5e-08 Score=97.19 Aligned_cols=60 Identities=23% Similarity=0.454 Sum_probs=51.8
Q ss_pred ccCCCCCCCCCCCCCC---CCCCCCCCCcCcccc-cccCcCCCCCCCcCCCCCCCCCCCCCccccCCCCC
Q 017879 280 QSLPSSVGPSSSSQKE---HPFPERPGQQECQYY-MKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLP 345 (364)
Q Consensus 280 ~~~~s~~~p~~~~~~~---~~~p~rp~~~eC~~y-~ktG~CkFg~~CkyhHp~~~~~~~~~~~ls~~GLP 345 (364)
++.+|..|..+.++|. ++|.+..+..+|+|| .+.|.|+||+.|+|.|-. +++...+.|+|
T Consensus 222 ~v~pS~~Wv~t~~~k~~li~e~~~~~s~~~c~yf~~~~g~cPf~s~~~y~h~~------~~~~~~~~~~~ 285 (344)
T KOG1039|consen 222 FVNPSSFWVETKEEKQKLIEEYEAEMSAKDCKYFSQGLGSCPFGSKCFYKHLL------PSGASTDPGRQ 285 (344)
T ss_pred cccccceeeeecccccccHHHHHHHhhccchhhhcCCCCCCCCCCcccccccc------ccccccccCCC
Confidence 5678888999888776 599999999999999 899999999999999987 56666666665
No 7
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.51 E-value=7e-08 Score=94.98 Aligned_cols=101 Identities=30% Similarity=0.572 Sum_probs=67.3
Q ss_pred ccccccccCCCCCCCCC-CCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCCCCCcC--
Q 017879 45 ADCIHYVRTGFCAYGSR-CRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVS-- 121 (364)
Q Consensus 45 ~~C~yflrtG~C~~G~~-CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~-- 121 (364)
++|+.|+| |.|++||+ |||.|+.....+. +-+-..|..|++ |.|.+ ++|||.|+.....+.-
T Consensus 38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~V~------------~g~v~aC~Ds~k-grCsR-~nCkylHpp~hlkdql~i 102 (331)
T KOG2494|consen 38 EVCREFLR-NTCSRGDRECKFAHPPKNCQVS------------NGRVIACFDSQK-GRCSR-ENCKYLHPPQHLKDQLKI 102 (331)
T ss_pred HHHHHHHh-ccccCCCccccccCCCCCCCcc------------CCeEEEEecccc-CccCc-ccceecCCChhhhhhhhh
Confidence 78999998 99999999 9999998854331 123457999999 99986 6799999876442210
Q ss_pred ----cccccC------CCCCCCCCccccc--cccccccCCCCC-CCcccCCCC
Q 017879 122 ----NVSLNY------YGYPLRPGEKECS--YYMKTRQCKFGA-TCKFHHPQP 161 (364)
Q Consensus 122 ----~~~ln~------~g~P~rpg~~~C~--fY~rtG~Ck~G~-~CrF~Hp~~ 161 (364)
+..+-. ....+-++.++|. .|. ++-|.-|. .|+|.|..+
T Consensus 103 ngrn~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f~-~~~~~~g~~~~s~~~y~~ 154 (331)
T KOG2494|consen 103 NGRNNLILQKTAAAMLAQQMQGPGTPICSVPMFA-TGPCLGGNTACSYWPYLP 154 (331)
T ss_pred cccccHHHHHHHHhhhcccccCCCcccccccccc-ccccccCCCccccccccC
Confidence 000000 0112225677777 444 47777663 688887766
No 8
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.39 E-value=3.6e-07 Score=89.35 Aligned_cols=103 Identities=20% Similarity=0.395 Sum_probs=79.0
Q ss_pred ccccccccCCCCCC---CCCCCCC---CCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCCCC
Q 017879 45 ADCIHYVRTGFCAY---GSRCRFN---HPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG 118 (364)
Q Consensus 45 ~~C~yflrtG~C~~---G~~CkF~---Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~ 118 (364)
.+|.-|.+.|.|++ |+.|.|. |..+...... .-...++++|..|.+.|.|.||.+|-|.|..+...
T Consensus 231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~--------k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~i 302 (351)
T COG5063 231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK--------KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDI 302 (351)
T ss_pred HHhhccCcCCCCccccccccccccccccccccccccc--------cccccccCCccchhhcccCccccccccccCChhhc
Confidence 78999999999999 9999999 9977654311 11236788999999999999999999999776442
Q ss_pred C-cCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCCC
Q 017879 119 S-VSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 162 (364)
Q Consensus 119 ~-~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~ 162 (364)
. ....++. .....|+-++++|.|+.|.+|.+.|....
T Consensus 303 e~~~~~~~~-------y~~~~crt~~~~g~~p~g~~~c~~~dkkn 340 (351)
T COG5063 303 EMYEEASLG-------YLDGPCRTRAKGGAFPSGGAVCKSFDKKN 340 (351)
T ss_pred ccccccccc-------ccccccccccccCccCCCCchhhccccch
Confidence 1 1111111 12346999999999999999999997654
No 9
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.33 E-value=5.9e-07 Score=87.69 Aligned_cols=88 Identities=32% Similarity=0.673 Sum_probs=70.6
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCCCCCcCc
Q 017879 43 DEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSN 122 (364)
Q Consensus 43 ~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~~ 122 (364)
...+|++|++ |+|+.+..|-|+|..+... .-...|++|...|.|..|..|.+.|.....
T Consensus 103 s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~---------------s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~----- 161 (285)
T COG5084 103 SSVVCKFFLR-GLCKSGFSCEFLHEYDLRS---------------SQGPPCRSFSLKGSCSSGPSCGYSHIDPDS----- 161 (285)
T ss_pred CCcccchhcc-ccCcCCCccccccCCCccc---------------ccCCCcccccccceeccCCCCCccccCccc-----
Confidence 3468999996 9999999999999888542 124579999555999999999999975321
Q ss_pred ccccCCCCCCCCCccccccccc--cccCCCCCCCcccCCCCCC
Q 017879 123 VSLNYYGYPLRPGEKECSYYMK--TRQCKFGATCKFHHPQPAG 163 (364)
Q Consensus 123 ~~ln~~g~P~rpg~~~C~fY~r--tG~Ck~G~~CrF~Hp~~~~ 163 (364)
....|.+|.+ +++|..|+.|++.|..-+.
T Consensus 162 ------------~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~ 192 (285)
T COG5084 162 ------------FAGNCDQYSGATYGFCPLGASCKFSHTLKRV 192 (285)
T ss_pred ------------ccccccccCcccccccCCCCccccccccccc
Confidence 1235888884 6999999999999998854
No 10
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.31 E-value=1.2e-07 Score=61.41 Aligned_cols=26 Identities=38% Similarity=1.128 Sum_probs=21.1
Q ss_pred cCCcccccccccCCCCCCCCCCCCCC
Q 017879 88 VGQPVCQYYMRTGTCKYGASCKYHHP 113 (364)
Q Consensus 88 ~k~~~Cr~flktG~Ck~G~~CkFsH~ 113 (364)
+++++|++|+++|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 36789999999999999999999997
No 11
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.30 E-value=1.2e-07 Score=61.39 Aligned_cols=26 Identities=38% Similarity=0.950 Sum_probs=21.4
Q ss_pred CCCccccccccCCCCCCCCCCCCCCC
Q 017879 42 PDEADCIHYVRTGFCAYGSRCRFNHP 67 (364)
Q Consensus 42 p~~~~C~yflrtG~C~~G~~CkF~Hp 67 (364)
+++++|++|+++|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 47899999999999999999999997
No 12
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.16 E-value=1e-05 Score=79.13 Aligned_cols=89 Identities=24% Similarity=0.480 Sum_probs=69.9
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCCCCCc
Q 017879 41 RPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSV 120 (364)
Q Consensus 41 Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~ 120 (364)
+..+..|.+++..+.+.....|+++|.... .....+|++|+. |.|+.+..|-|+|..+....
T Consensus 71 ~gn~~~~~~~~~~~~~~~~~s~~~~~~~~~----------------~~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~s- 132 (285)
T COG5084 71 PGNTVACISRNFNSIRGSRLSTPNNHVNPV----------------LSSSVVCKFFLR-GLCKSGFSCEFLHEYDLRSS- 132 (285)
T ss_pred cCcccccccccccCCccccccCCccccCcc----------------ccCCcccchhcc-ccCcCCCccccccCCCcccc-
Confidence 345667999987777777779999996532 134568999999 99999999999998764321
Q ss_pred CcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCC
Q 017879 121 SNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (364)
Q Consensus 121 ~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~ 161 (364)
-...|++|-..|.|..|..|.+.|.++
T Consensus 133 --------------~~~~c~~Fs~~G~cs~g~~c~~~h~dp 159 (285)
T COG5084 133 --------------QGPPCRSFSLKGSCSSGPSCGYSHIDP 159 (285)
T ss_pred --------------cCCCcccccccceeccCCCCCccccCc
Confidence 134699995559999999999999985
No 13
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=5.8e-06 Score=85.07 Aligned_cols=81 Identities=25% Similarity=0.634 Sum_probs=62.5
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCCCCCcCccc
Q 017879 45 ADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVS 124 (364)
Q Consensus 45 ~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~~~~ 124 (364)
++|.||+ .-.|++++.|.|.|-.+-. ....+|.+|+..-.|+. .|+|.|..-...
T Consensus 4 ~dcyff~-ys~cKk~d~c~~rh~E~al----------------~n~t~C~~w~~~~~C~k--~C~YRHSe~~~k------ 58 (667)
T KOG4791|consen 4 EDCYFFF-YSTCKKGDSCPFRHCEAAL----------------GNETVCTLWQEGRCCRK--VCRYRHSEIDKK------ 58 (667)
T ss_pred ccchhhh-hhhhhccCcCcchhhHHHh----------------cCcchhhhhhhcCcccc--cccchhhHHhhh------
Confidence 6899998 4899999999999976532 23458999998656775 799999754321
Q ss_pred ccCCCCCCCCCcccccccccccc-CCCCCCCcccCCCC
Q 017879 125 LNYYGYPLRPGEKECSYYMKTRQ-CKFGATCKFHHPQP 161 (364)
Q Consensus 125 ln~~g~P~rpg~~~C~fY~rtG~-Ck~G~~CrF~Hp~~ 161 (364)
..+.+|.|+.+ +. |. .++|-|.|..+
T Consensus 59 ---------r~e~~CYwe~~-p~gC~-k~~CgfRH~~p 85 (667)
T KOG4791|consen 59 ---------RSEIPCYWENQ-PTGCQ-KLNCGFRHNRP 85 (667)
T ss_pred ---------cCcccceeecC-CCccC-CCccccccCCC
Confidence 13467999998 87 87 69999999663
No 14
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.82 E-value=0.00011 Score=76.61 Aligned_cols=87 Identities=24% Similarity=0.464 Sum_probs=65.2
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCC--cCCcccccccccCCCCCCCCCCCCCCCCCCCCcCcccccCCCCC
Q 017879 54 GFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPER--VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYP 131 (364)
Q Consensus 54 G~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per--~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~~~~ln~~g~P 131 (364)
+.|.-+-.|.|.|+.++.+. ..|.+ +.-.+|..|-+ |.|+.||+|-|.|.+-+- .| -|
T Consensus 207 ~~shDwteCPf~HpgEkARR---------RDPRkyhYs~tpCPefrk-G~C~rGD~CEyaHgvfEc------wL----HP 266 (528)
T KOG1595|consen 207 PRSHDWTECPFAHPGEKARR---------RDPRKYHYSSTPCPEFRK-GSCERGDSCEYAHGVFEC------WL----HP 266 (528)
T ss_pred ccCCCcccCCccCCCccccc---------CCcccccccCccCccccc-CCCCCCCccccccceehh------hc----CH
Confidence 35667789999998776543 22222 45678999998 999999999999976542 11 25
Q ss_pred CCCCccccccccccccCCCCCCCcccCCCCCCC
Q 017879 132 LRPGEKECSYYMKTRQCKFGATCKFHHPQPAGV 164 (364)
Q Consensus 132 ~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~~~ 164 (364)
.+.++..|+.- |.|++ .-|-|+|....-.
T Consensus 267 a~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR 295 (528)
T KOG1595|consen 267 ARYRTRKCKDG---GYCPR-RVCFFAHSPEQLR 295 (528)
T ss_pred HHhccccccCC---CCCcc-ceEeeecChHHhc
Confidence 66788889885 78998 8899999876543
No 15
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=97.80 E-value=3.4e-05 Score=75.77 Aligned_cols=120 Identities=19% Similarity=0.432 Sum_probs=81.1
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCccc-----------cccC-----CCCCCC-------------CC
Q 017879 37 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMG-----------AARA-----GGGEFP-------------ER 87 (364)
Q Consensus 37 ~~P~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~-----------~~r~-----~~~~~P-------------er 87 (364)
..+-|.+++-|.-|+.-+.|.++.+|-|.|-..-..+.. .+.. .....| .-
T Consensus 146 ~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~l~~rkpks~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L 225 (351)
T COG5063 146 QTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQPLSQRKPKSGKNCTSYTLGKESDAHPHDELIYQKQEQNKPL 225 (351)
T ss_pred ccCccccccceeEEecCCccccccccccccccccccCcchhhccCcccCcCccccccccccccCchhhhhhhhhhccchh
Confidence 444566777888888888888888888887432211100 0000 001111 11
Q ss_pred cCC--cccccccccCCCCC---CCCCCCC---CCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCC
Q 017879 88 VGQ--PVCQYYMRTGTCKY---GASCKYH---HPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP 159 (364)
Q Consensus 88 ~k~--~~Cr~flktG~Ck~---G~~CkFs---H~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp 159 (364)
.++ .+|.-|...|.|++ |+.|.|+ |...+... .+.-...++..|..|.+.|.|++|.+|-|.|.
T Consensus 226 ~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~--------k~k~~~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 226 YKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS--------KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred hcCCHHHhhccCcCCCCccccccccccccccccccccccc--------cccccccccCCccchhhcccCccccccccccC
Confidence 234 68999999999999 9999999 87654321 11122346778999999999999999999999
Q ss_pred CCCCC
Q 017879 160 QPAGV 164 (364)
Q Consensus 160 ~~~~~ 164 (364)
....+
T Consensus 298 d~~~i 302 (351)
T COG5063 298 DDSDI 302 (351)
T ss_pred Chhhc
Confidence 98765
No 16
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.78 E-value=1e-05 Score=79.97 Aligned_cols=58 Identities=33% Similarity=0.690 Sum_probs=44.2
Q ss_pred CcccccccccCCCCCCCC-CCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCCC
Q 017879 90 QPVCQYYMRTGTCKYGAS-CKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 162 (364)
Q Consensus 90 ~~~Cr~flktG~Ck~G~~-CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~ 162 (364)
..+||.|+| |.|++|++ |||.|+..... ++-+ +-..|..|++ |.|.+ ++|||.|+..-
T Consensus 37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~~~----V~~g--------~v~aC~Ds~k-grCsR-~nCkylHpp~h 95 (331)
T KOG2494|consen 37 LEVCREFLR-NTCSRGDRECKFAHPPKNCQ----VSNG--------RVIACFDSQK-GRCSR-ENCKYLHPPQH 95 (331)
T ss_pred HHHHHHHHh-ccccCCCccccccCCCCCCC----ccCC--------eEEEEecccc-CccCc-ccceecCCChh
Confidence 458999999 99999999 99999865321 1111 1235999998 99986 66999998653
No 17
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.76 E-value=1.8e-05 Score=50.00 Aligned_cols=25 Identities=36% Similarity=1.157 Sum_probs=21.8
Q ss_pred cCCcccccccccCCCCCCCCCCCCCC
Q 017879 88 VGQPVCQYYMRTGTCKYGASCKYHHP 113 (364)
Q Consensus 88 ~k~~~Cr~flktG~Ck~G~~CkFsH~ 113 (364)
.++.+|++| .+|.|++|++|+|+|+
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence 356799999 4599999999999996
No 18
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.71 E-value=2.7e-05 Score=49.20 Aligned_cols=25 Identities=40% Similarity=1.169 Sum_probs=22.2
Q ss_pred CCCccccccccCCCCCCCCCCCCCCC
Q 017879 42 PDEADCIHYVRTGFCAYGSRCRFNHP 67 (364)
Q Consensus 42 p~~~~C~yflrtG~C~~G~~CkF~Hp 67 (364)
.++.+|.+| ++|.|.+|++|+|.|+
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence 456799999 5799999999999996
No 19
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.32 E-value=6.1e-05 Score=73.74 Aligned_cols=80 Identities=24% Similarity=0.589 Sum_probs=54.2
Q ss_pred CCcCCcccccccccCCCCCCCCCCCCCCCCCCCCcCcccc-------------------cCCCCCCCCCccccccccc--
Q 017879 86 ERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSL-------------------NYYGYPLRPGEKECSYYMK-- 144 (364)
Q Consensus 86 er~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~~~~l-------------------n~~g~P~rpg~~~C~fY~r-- 144 (364)
..++..+|.+|.. |.|..|+.|+|+|+........-.++ .-.+.+......+|.||+-
T Consensus 88 vDPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAv 166 (343)
T KOG1763|consen 88 VDPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAV 166 (343)
T ss_pred CCchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHH
Confidence 3468899999998 99999999999999874322111000 0012222223568999973
Q ss_pred ----cc---cCCCCC-CCcccCCCCCCCCC
Q 017879 145 ----TR---QCKFGA-TCKFHHPQPAGVPA 166 (364)
Q Consensus 145 ----tG---~Ck~G~-~CrF~Hp~~~~~~~ 166 (364)
+| .|++|. .|.|.|..+.+-.+
T Consensus 167 E~~kYGWfW~CPnGg~~C~YrHaLP~GyVL 196 (343)
T KOG1763|consen 167 ENGKYGWFWECPNGGDKCIYRHALPEGYVL 196 (343)
T ss_pred hcCCccceeECCCCCCeeeeeecCCcchhh
Confidence 22 499985 89999999876543
No 20
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.29 E-value=7.2e-05 Score=77.61 Aligned_cols=60 Identities=17% Similarity=0.572 Sum_probs=47.0
Q ss_pred CCccccccccc--CCCCCCCCCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccC
Q 017879 89 GQPVCQYYMRT--GTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 158 (364)
Q Consensus 89 k~~~Cr~flkt--G~Ck~G~~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~H 158 (364)
...+|.-..++ -.|.||++|+|.|+.+.--.....++. +.|++|...|+|.+|-+|||.-
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig----------~~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIG----------PSCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCcccC----------CccceeeccccCCccceeehhh
Confidence 46689999985 469999999999998754333322222 5699999999999999999963
No 21
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.21 E-value=7.5e-05 Score=73.12 Aligned_cols=79 Identities=23% Similarity=0.562 Sum_probs=52.0
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCcccc------ccCC-------------CCCCCCCcCCcccccccc
Q 017879 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGA------ARAG-------------GGEFPERVGQPVCQYYMR 98 (364)
Q Consensus 38 ~P~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~------~r~~-------------~~~~Per~k~~~Cr~flk 98 (364)
--+.|+..+|.||. .|.|..|+.|+|+|+....+-... .|+. ...-|-.....+|+||+.
T Consensus 86 ~gvDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLe 164 (343)
T KOG1763|consen 86 KGVDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLE 164 (343)
T ss_pred cCCCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHH
Confidence 44778899999998 599999999999998775442110 0000 000111113348999985
Q ss_pred c------C---CCCCCC-CCCCCCCCCCC
Q 017879 99 T------G---TCKYGA-SCKYHHPRQGA 117 (364)
Q Consensus 99 t------G---~Ck~G~-~CkFsH~~~~~ 117 (364)
. | .|.+|. .|.|.|-....
T Consensus 165 AvE~~kYGWfW~CPnGg~~C~YrHaLP~G 193 (343)
T KOG1763|consen 165 AVENGKYGWFWECPNGGDKCIYRHALPEG 193 (343)
T ss_pred HHhcCCccceeECCCCCCeeeeeecCCcc
Confidence 2 2 298875 89999987643
No 22
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=97.04 E-value=0.0004 Score=66.23 Aligned_cols=91 Identities=24% Similarity=0.616 Sum_probs=70.1
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCCCCcc-------ccccCCCC-----CCCCCcCCcccccccccCCCCCCCCCCCC
Q 017879 44 EADCIHYVRTGFCAYGSRCRFNHPRDRGSVM-------GAARAGGG-----EFPERVGQPVCQYYMRTGTCKYGASCKYH 111 (364)
Q Consensus 44 ~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~-------~~~r~~~~-----~~Per~k~~~Cr~flktG~Ck~G~~CkFs 111 (364)
..+|..|+ .|.|.+.+.|...|..+..++. +.+..... .|.| ..++|.-|.+.|+|..|.+|+-.
T Consensus 233 kticpkfl-ngrcnkaedcnlsheldprripacryfllgkcnnpncryvhihyse--napicfefakygfcelgtscknq 309 (377)
T KOG1492|consen 233 KTICPKFL-NGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSE--NAPICFEFAKYGFCELGTSCKNQ 309 (377)
T ss_pred cccChHHh-cCccCchhcCCcccccCccccchhhhhhhccCCCCCceEEEEeecC--CCceeeeehhcceeccccccccc
Confidence 47899999 5999999999999998876542 12212111 3333 57899999999999999999999
Q ss_pred CCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCC
Q 017879 112 HPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (364)
Q Consensus 112 H~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~ 161 (364)
|-. .|..|...|.|. ...|.+.|..-
T Consensus 310 hil-----------------------qctdyamfgscn-npqcslyhgav 335 (377)
T KOG1492|consen 310 HIL-----------------------QCTDYAMFGSCN-NPQCSLYHGAV 335 (377)
T ss_pred eee-----------------------eecchhhhcCCC-CCcceeeccee
Confidence 953 388888889997 67899888643
No 23
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.03 E-value=0.00022 Score=74.07 Aligned_cols=60 Identities=23% Similarity=0.618 Sum_probs=46.6
Q ss_pred CCccccccccC--CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCC
Q 017879 43 DEADCIHYVRT--GFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHH 112 (364)
Q Consensus 43 ~~~~C~yflrt--G~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH 112 (364)
...+|.-.... -.|.||++|+|.|+.+.-.+. .+++. .+.|..|...|.|.+|-+|||.-
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLat---------K~~Di-g~~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLAT---------KAPDI-GPSCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhc---------cCccc-CCccceeeccccCCccceeehhh
Confidence 45789988875 589999999999998864331 11112 25799999999999999999963
No 24
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00074 Score=69.98 Aligned_cols=106 Identities=15% Similarity=0.232 Sum_probs=68.7
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCCCC----
Q 017879 43 DEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG---- 118 (364)
Q Consensus 43 ~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~---- 118 (364)
-..+|.+|+..-.|++ .|+|.|..-.. .....+|.|+++.-.|.. .+|-|.|.+....
T Consensus 31 n~t~C~~w~~~~~C~k--~C~YRHSe~~~---------------kr~e~~CYwe~~p~gC~k-~~CgfRH~~pPLkg~l~ 92 (667)
T KOG4791|consen 31 NETVCTLWQEGRCCRK--VCRYRHSEIDK---------------KRSEIPCYWENQPTGCQK-LNCGFRHNRPPLKGVLP 92 (667)
T ss_pred CcchhhhhhhcCcccc--cccchhhHHhh---------------hcCcccceeecCCCccCC-CccccccCCCchhhhcc
Confidence 3468999997666776 99999964321 124458999999444985 7899999653211
Q ss_pred ---CcCcccccCCCC-----CCCCCccccccccccccCCCCCCCcccCCCCCCCCCC
Q 017879 119 ---SVSNVSLNYYGY-----PLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAP 167 (364)
Q Consensus 119 ---~~~~~~ln~~g~-----P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~~~~~~ 167 (364)
....++.....+ .+...-..|-+|++ |.|.-++.|-|.|+.++.....
T Consensus 93 ~~p~~pe~ev~~~~~SAq~~sV~~~p~P~l~~~K-~~e~~~D~~s~Lh~P~A~~~~~ 148 (667)
T KOG4791|consen 93 TVPESPEEEVKASQLSAQQNSVQSNPSPQLRSVK-KVESSEDVPSPLHPPVAINAAD 148 (667)
T ss_pred CCCCCcccccccccccCCCcccccCCchHHHHhh-hhhhhccccccCCCCccccccc
Confidence 011111111111 01112357999998 9999999999999987655443
No 25
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.66 E-value=0.0011 Score=67.48 Aligned_cols=58 Identities=24% Similarity=0.645 Sum_probs=39.6
Q ss_pred CCCCCCCCCCCCCCCC------ccccccCC----CCCCCCCcCCcccccccccCCCCCCCCCCCCCCCC
Q 017879 57 AYGSRCRFNHPRDRGS------VMGAARAG----GGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ 115 (364)
Q Consensus 57 ~~G~~CkF~Hp~~~~~------~~~~~r~~----~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~ 115 (364)
--|++|.+-|...... +++.-... .-.+|.-....+|.||+. |.|+|+++|||+|...
T Consensus 97 L~GsKcsaph~ss~gl~yHna~I~g~E~sarvRVlfl~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 97 LDGSKCSAPHTSSRGLYYHNARIIGFEGSARVRVLFLTPTHESMKPCKFFLE-GRCRFGENCRFSHGLD 164 (486)
T ss_pred ccCCcccccccCCccceecceeEEeeccccceEEEeecCcchhhccchHhhc-cccccCcccccccCcc
Confidence 3488888888766541 11100000 014565567889999998 9999999999999765
No 26
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=96.55 E-value=0.00099 Score=69.79 Aligned_cols=59 Identities=22% Similarity=0.479 Sum_probs=49.7
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCCCC
Q 017879 45 ADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG 118 (364)
Q Consensus 45 ~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~ 118 (364)
..|.-|.| |.|++||.|-|.|..-+.- -+|+++++..|+.= |.|+. .-|-|+|..+..+
T Consensus 237 tpCPefrk-G~C~rGD~CEyaHgvfEcw----------LHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR 295 (528)
T KOG1595|consen 237 TPCPEFRK-GSCERGDSCEYAHGVFECW----------LHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQLR 295 (528)
T ss_pred ccCccccc-CCCCCCCccccccceehhh----------cCHHHhccccccCC---CCCcc-ceEeeecChHHhc
Confidence 56888975 9999999999999876532 67999999999987 77998 7799999877553
No 27
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.36 E-value=0.001 Score=63.74 Aligned_cols=79 Identities=25% Similarity=0.627 Sum_probs=53.6
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCccc------cccCCCCCCC--CC---cCCcccccccc---cC--
Q 017879 37 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMG------AARAGGGEFP--ER---VGQPVCQYYMR---TG-- 100 (364)
Q Consensus 37 ~~P~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~------~~r~~~~~~P--er---~k~~~Cr~flk---tG-- 100 (364)
+.-+.|++.+|..|+ .+.|..|+.|+|+|..+..+... .+|+.....| +| ....+|+||+. +|
T Consensus 78 ragvdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkY 156 (299)
T COG5252 78 RAGVDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKY 156 (299)
T ss_pred ccccCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCc
Confidence 445678999999998 59999999999999966543211 1122222222 22 23458999985 33
Q ss_pred ----CCCCC-CCCCCCCCCCC
Q 017879 101 ----TCKYG-ASCKYHHPRQG 116 (364)
Q Consensus 101 ----~Ck~G-~~CkFsH~~~~ 116 (364)
.|.+| .+|-|.|....
T Consensus 157 gw~W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 157 GWGWTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred cceeeCCCCCceeeeeeccCc
Confidence 28887 67999998764
No 28
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.29 E-value=0.00091 Score=64.01 Aligned_cols=79 Identities=25% Similarity=0.631 Sum_probs=53.6
Q ss_pred CCcCCcccccccccCCCCCCCCCCCCCCCCCCCCcCcccc------cCCCCC--CCC---Cccccccccc---cc-----
Q 017879 86 ERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSL------NYYGYP--LRP---GEKECSYYMK---TR----- 146 (364)
Q Consensus 86 er~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~~~~l------n~~g~P--~rp---g~~~C~fY~r---tG----- 146 (364)
+.+++.+|..|+. +.|-.|+.|+|+|.....+...-.+| ..-..| .|| -..+|.||+. +|
T Consensus 81 vdpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~ 159 (299)
T COG5252 81 VDPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWG 159 (299)
T ss_pred cCchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccce
Confidence 3468899999998 99988999999999765432211111 001111 223 3578999973 23
Q ss_pred -cCCCC-CCCcccCCCCCCCC
Q 017879 147 -QCKFG-ATCKFHHPQPAGVP 165 (364)
Q Consensus 147 -~Ck~G-~~CrF~Hp~~~~~~ 165 (364)
.|++| .+|-|.|..+-+..
T Consensus 160 W~CPng~~~C~y~H~Lp~GyV 180 (299)
T COG5252 160 WTCPNGNMRCSYIHKLPDGYV 180 (299)
T ss_pred eeCCCCCceeeeeeccCccce
Confidence 49998 58999999987543
No 29
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.19 E-value=0.0028 Score=64.72 Aligned_cols=32 Identities=28% Similarity=0.871 Sum_probs=27.6
Q ss_pred CCCCCccccccccccccCCCCCCCcccCCCCCC
Q 017879 131 PLRPGEKECSYYMKTRQCKFGATCKFHHPQPAG 163 (364)
Q Consensus 131 P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~~ 163 (364)
|.....++|.||+. |.|+|+.+|||.|...-.
T Consensus 135 PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V~ 166 (486)
T KOG2185|consen 135 PTHESMKPCKFFLE-GRCRFGENCRFSHGLDVP 166 (486)
T ss_pred CcchhhccchHhhc-cccccCcccccccCcccc
Confidence 66667789999998 999999999999987643
No 30
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.97 E-value=0.0045 Score=37.07 Aligned_cols=19 Identities=32% Similarity=0.999 Sum_probs=17.0
Q ss_pred ccccccccCCCCCCCCCCCCCC
Q 017879 92 VCQYYMRTGTCKYGASCKYHHP 113 (364)
Q Consensus 92 ~Cr~flktG~Ck~G~~CkFsH~ 113 (364)
+|+||.. |+++++|.|.|+
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 4998876 999999999995
No 31
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=95.97 E-value=0.014 Score=62.64 Aligned_cols=104 Identities=21% Similarity=0.536 Sum_probs=58.6
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCc--cccccCCCCCCCCC--cCCcccccccccCCCCCCCCCCCCCCCCCCCCc
Q 017879 45 ADCIHYVRTGFCAYGSRCRFNHPRDRGSV--MGAARAGGGEFPER--VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSV 120 (364)
Q Consensus 45 ~~C~yflrtG~C~~G~~CkF~Hp~~~~~~--~~~~r~~~~~~Per--~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~ 120 (364)
++|+|+. .|. +..|.|.|+...... ... ..++++ ...+-|+|=.+ |.. ..|.|.|........
T Consensus 545 ~~Cky~~---~Ct-~a~Ce~~HPtaa~~~~s~p~-----k~fa~~~~ks~p~Ck~~~k---Cta-sDC~~sH~~~~~pvq 611 (681)
T KOG3702|consen 545 TRCKYGP---ACT-SAECEFAHPTAAENAKSLPN-----KKFASKCLKSHPGCKFGKK---CTA-SDCNYSHAGRRIPVQ 611 (681)
T ss_pred ccccCCC---cCC-chhhhhcCCcchhhhhcccc-----ccccccceecccccccccc---ccc-ccCcccccCCCCCCc
Confidence 5799998 598 999999998775221 111 011111 12234554444 543 558899976643111
Q ss_pred CcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCCCCCCCC
Q 017879 121 SNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAP 167 (364)
Q Consensus 121 ~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~~~~~~ 167 (364)
.-.+.. -++...-..+|+|+ +.|+ ...|+|.||...-.+..
T Consensus 612 -~t~ip~-~~~~~ti~~~CrY~---pnCr-nm~C~F~HPk~cRf~~~ 652 (681)
T KOG3702|consen 612 -PTRIPP-PFPGGTIRGLCRYR---PNCR-NMQCKFYHPKTCRFNTN 652 (681)
T ss_pred -cccCCC-CCCCCCccccceec---cCcC-CccccccCCcccccccc
Confidence 001110 01112234679986 4587 57899999998876553
No 32
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.81 E-value=0.0057 Score=36.61 Aligned_cols=19 Identities=37% Similarity=1.002 Sum_probs=16.9
Q ss_pred ccccccccccCCCCCCCcccCC
Q 017879 138 ECSYYMKTRQCKFGATCKFHHP 159 (364)
Q Consensus 138 ~C~fY~rtG~Ck~G~~CrF~Hp 159 (364)
.|+|+.. |+++++|.|.||
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 4898875 999999999997
No 33
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.74 E-value=0.01 Score=55.84 Aligned_cols=27 Identities=48% Similarity=1.006 Sum_probs=24.6
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCC
Q 017879 90 QPVCQYYMRTGTCKYGASCKYHHPRQG 116 (364)
Q Consensus 90 ~~~Cr~flktG~Ck~G~~CkFsH~~~~ 116 (364)
..+|+.|..||.|-||++|+|+|.++.
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhh
Confidence 348999999999999999999999873
No 34
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.63 E-value=0.011 Score=55.51 Aligned_cols=29 Identities=38% Similarity=0.891 Sum_probs=25.4
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCC
Q 017879 43 DEADCIHYVRTGFCAYGSRCRFNHPRDRG 71 (364)
Q Consensus 43 ~~~~C~yflrtG~C~~G~~CkF~Hp~~~~ 71 (364)
...+|+.|..||.|.||+.|+|+|..+.-
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred CcccccchhhcccccCCchhhhhhhhhhh
Confidence 34689999999999999999999988753
No 35
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=93.57 E-value=0.19 Score=54.24 Aligned_cols=91 Identities=27% Similarity=0.682 Sum_probs=54.2
Q ss_pred CCCCCCCCccccccccCCCCCCC-----CCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCC
Q 017879 37 SYPERPDEADCIHYVRTGFCAYG-----SRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYH 111 (364)
Q Consensus 37 ~~P~Rp~~~~C~yflrtG~C~~G-----~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFs 111 (364)
.+|...-...|.+-+. .|++| ..|.|.|......+. +..-...++--.-..+|+|+- .|+. -.|+|.
T Consensus 571 s~p~k~fa~~~~ks~p--~Ck~~~kCtasDC~~sH~~~~~pvq--~t~ip~~~~~~ti~~~CrY~p---nCrn-m~C~F~ 642 (681)
T KOG3702|consen 571 SLPNKKFASKCLKSHP--GCKFGKKCTASDCNYSHAGRRIPVQ--PTRIPPPFPGGTIRGLCRYRP---NCRN-MQCKFY 642 (681)
T ss_pred ccccccccccceeccc--ccccccccccccCcccccCCCCCCc--cccCCCCCCCCCccccceecc---CcCC-cccccc
Confidence 3333333344555543 56666 345677766654221 111111222223456899984 4985 569999
Q ss_pred CCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCC
Q 017879 112 HPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (364)
Q Consensus 112 H~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~ 161 (364)
|+.. |+|-.+ |..-..|-|.|+.+
T Consensus 643 HPk~-----------------------cRf~~~---c~~~~sc~fYh~r~ 666 (681)
T KOG3702|consen 643 HPKT-----------------------CRFNTN---CPNNPSCTFYHERP 666 (681)
T ss_pred CCcc-----------------------cccccc---CCCCcccccccCCc
Confidence 9743 777554 88888999999988
No 36
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=91.05 E-value=0.038 Score=53.53 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=25.0
Q ss_pred CCccccccccccccCCCCCCCcccCCCCCC
Q 017879 134 PGEKECSYYMKTRQCKFGATCKFHHPQPAG 163 (364)
Q Consensus 134 pg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~~ 163 (364)
..+..|.+|.+ +.|.+|..|-|.|....+
T Consensus 150 ~rea~C~~~e~-~~C~rG~~CnFmH~k~~s 178 (260)
T KOG2202|consen 150 FREAICGQFER-TECSRGGACNFMHVKRLS 178 (260)
T ss_pred hhhhhhccccc-ccCCCCCcCcchhhhhhh
Confidence 36778999999 699999999999998544
No 37
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=0.078 Score=52.47 Aligned_cols=27 Identities=44% Similarity=1.003 Sum_probs=24.5
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCC
Q 017879 90 QPVCQYYMRTGTCKYGASCKYHHPRQG 116 (364)
Q Consensus 90 ~~~Cr~flktG~Ck~G~~CkFsH~~~~ 116 (364)
..+|+.|-.||.|-||++|+|+|.+..
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~D 212 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSD 212 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhh
Confidence 348999999999999999999999873
No 38
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.62 E-value=0.13 Score=52.15 Aligned_cols=25 Identities=44% Similarity=1.083 Sum_probs=23.7
Q ss_pred cccccccccccCCCCCCCcccCCCCC
Q 017879 137 KECSYYMKTRQCKFGATCKFHHPQPA 162 (364)
Q Consensus 137 ~~C~fY~rtG~Ck~G~~CrF~Hp~~~ 162 (364)
.+|+||.+ |.|+||+.|||.|..+.
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCch
Confidence 68999999 99999999999999995
No 39
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.11 Score=51.48 Aligned_cols=28 Identities=39% Similarity=0.916 Sum_probs=24.9
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCCC
Q 017879 44 EADCIHYVRTGFCAYGSRCRFNHPRDRG 71 (364)
Q Consensus 44 ~~~C~yflrtG~C~~G~~CkF~Hp~~~~ 71 (364)
..+|+.|-.||.|.||+.|+|+|....-
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhhc
Confidence 3679999999999999999999987743
No 40
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=81.61 E-value=0.95 Score=28.61 Aligned_cols=22 Identities=32% Similarity=1.034 Sum_probs=18.1
Q ss_pred cccccccccCCCCCCCCCCCCCC
Q 017879 91 PVCQYYMRTGTCKYGASCKYHHP 113 (364)
Q Consensus 91 ~~Cr~flktG~Ck~G~~CkFsH~ 113 (364)
++|.|-++.|.|. .++|.|.|-
T Consensus 1 ~lC~yEl~Gg~Cn-d~~C~~QHf 22 (23)
T PF10650_consen 1 PLCPYELTGGVCN-DPDCEFQHF 22 (23)
T ss_pred CCCccccCCCeeC-CCCCCcccc
Confidence 4799999966997 467999995
No 41
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=79.26 E-value=1.2 Score=28.15 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=18.2
Q ss_pred ccccccccCCCCCCCCCCCCCCC
Q 017879 45 ADCIHYVRTGFCAYGSRCRFNHP 67 (364)
Q Consensus 45 ~~C~yflrtG~C~~G~~CkF~Hp 67 (364)
++|.|-++.|.|. .+.|.|.|=
T Consensus 1 ~lC~yEl~Gg~Cn-d~~C~~QHf 22 (23)
T PF10650_consen 1 PLCPYELTGGVCN-DPDCEFQHF 22 (23)
T ss_pred CCCccccCCCeeC-CCCCCcccc
Confidence 4799999755998 788999993
No 42
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=76.58 E-value=1.9 Score=43.80 Aligned_cols=34 Identities=26% Similarity=0.682 Sum_probs=28.3
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCC
Q 017879 35 AESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRD 69 (364)
Q Consensus 35 ~~~~P~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~ 69 (364)
...|=.|....+|.||.+ |.|++|+.|.|+|...
T Consensus 152 t~p~ykrn~p~Icsf~v~-geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 152 TTPYYKRNRPHICSFFVK-GECKRGAECPYRHEKP 185 (377)
T ss_pred cCccccCCCCccccceee-ccccccccccccccCC
Confidence 344446677799999997 8999999999999776
No 43
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=68.85 E-value=2.2 Score=41.71 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.6
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCC
Q 017879 40 ERPDEADCIHYVRTGFCAYGSRCRFNHPRD 69 (364)
Q Consensus 40 ~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~ 69 (364)
.+.++.+|..|.+ +.|.+|..|.|.|...
T Consensus 148 T~~rea~C~~~e~-~~C~rG~~CnFmH~k~ 176 (260)
T KOG2202|consen 148 TDFREAICGQFER-TECSRGGACNFMHVKR 176 (260)
T ss_pred Cchhhhhhccccc-ccCCCCCcCcchhhhh
Confidence 6778899999997 5999999999999763
No 44
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=67.41 E-value=3.2 Score=42.27 Aligned_cols=30 Identities=37% Similarity=0.906 Sum_probs=25.5
Q ss_pred CCCccccccccccccCCCCCCCcccCCCCCC
Q 017879 133 RPGEKECSYYMKTRQCKFGATCKFHHPQPAG 163 (364)
Q Consensus 133 rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~~ 163 (364)
|..-.+|.||.+ |.|++|+.|.|+|..+..
T Consensus 158 rn~p~Icsf~v~-geckRG~ec~yrhEkp~d 187 (377)
T KOG0153|consen 158 RNRPHICSFFVK-GECKRGAECPYRHEKPPD 187 (377)
T ss_pred CCCCccccceee-ccccccccccccccCCCC
Confidence 334568999998 999999999999999843
No 45
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=21.32 E-value=38 Score=36.08 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=30.6
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCC
Q 017879 36 ESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRG 71 (364)
Q Consensus 36 ~~~P~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~ 71 (364)
..+..|..+..|++|.++|.|.+|+.|++.|..+..
T Consensus 204 gp~ks~~s~~r~k~fee~g~~~r~el~p~~hg~~~v 239 (526)
T KOG2135|consen 204 GPEKSRNSENRRKFFEEFGVLERGELCPTHHGCVPV 239 (526)
T ss_pred CcccccccHHhhhhhHhhceeeecccccccccccee
Confidence 445567777899999999999999999999987753
Done!