Query 017879
Match_columns 364
No_of_seqs 291 out of 1575
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 06:24:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.5 3.3E-14 1.1E-18 111.9 5.7 70 41-147 7-76 (77)
2 1m9o_A Tristetraproline; Cys3H 99.5 1.6E-14 5.6E-19 112.4 3.9 68 40-115 8-75 (77)
3 2cqe_A KIAA1064 protein; CCCH 99.4 1.6E-14 5.5E-19 118.9 1.7 89 36-147 5-95 (98)
4 1m9o_A Tristetraproline; Cys3H 99.4 5.6E-14 1.9E-18 109.3 3.3 67 87-161 9-75 (77)
5 2d9n_A Cleavage and polyadenyl 99.3 3E-12 1E-16 100.7 4.4 58 88-164 8-65 (77)
6 2cqe_A KIAA1064 protein; CCCH 99.3 3.1E-12 1.1E-16 105.2 4.7 52 87-161 10-61 (98)
7 2rhk_C Cleavage and polyadenyl 99.2 2E-12 7E-17 100.7 2.7 58 40-116 12-69 (72)
8 2rhk_C Cleavage and polyadenyl 99.2 2.5E-12 8.6E-17 100.2 3.1 58 87-163 13-70 (72)
9 3d2q_A Muscleblind-like protei 99.1 2.9E-11 1E-15 93.4 3.4 60 43-115 5-65 (70)
10 2e5s_A Otthump00000018578; ZF- 99.1 1.7E-11 5.8E-16 100.9 2.0 69 34-115 10-79 (98)
11 3d2q_A Muscleblind-like protei 99.0 1.9E-10 6.6E-15 88.8 2.6 60 89-161 5-65 (70)
12 2e5s_A Otthump00000018578; ZF- 98.9 2.2E-10 7.6E-15 94.2 0.6 61 88-161 18-79 (98)
13 3d2n_A Muscleblind-like protei 98.9 9.6E-10 3.3E-14 87.9 4.0 58 43-115 8-66 (83)
14 2rpp_A Muscleblind-like protei 98.8 2.9E-09 9.9E-14 86.3 3.1 57 44-115 17-74 (89)
15 3d2n_A Muscleblind-like protei 98.7 4.2E-09 1.4E-13 84.2 3.0 59 88-161 7-66 (83)
16 2rpp_A Muscleblind-like protei 98.6 2E-08 7E-13 81.3 4.3 58 89-161 16-74 (89)
17 3u9g_A Zinc finger CCCH-type a 98.6 1.3E-08 4.4E-13 94.8 3.3 85 44-162 89-199 (229)
18 2lhn_A Nuclear polyadenylated 97.4 4.2E-07 1.4E-11 72.2 0.0 68 44-164 9-76 (80)
19 3u9g_A Zinc finger CCCH-type a 97.4 6.2E-05 2.1E-09 70.1 3.4 43 45-115 152-198 (229)
20 2d9m_A Zinc finger CCCH-type d 96.6 0.0008 2.7E-08 52.0 1.9 29 43-72 19-47 (69)
21 2d9m_A Zinc finger CCCH-type d 96.4 0.00074 2.5E-08 52.1 1.1 28 89-117 19-46 (69)
22 2lhn_A Nuclear polyadenylated 94.6 0.002 7E-08 51.0 0.0 43 89-159 8-50 (80)
23 2fc6_A Nuclear, target of EGR1 95.5 0.0037 1.3E-07 45.2 1.1 29 88-116 18-46 (50)
24 2fc6_A Nuclear, target of EGR1 94.1 0.016 5.6E-07 41.9 1.4 29 42-70 18-46 (50)
25 3u1l_A PRE-mRNA-splicing facto 93.2 0.022 7.5E-07 53.3 1.0 27 135-162 69-95 (240)
26 3u1l_A PRE-mRNA-splicing facto 92.6 0.027 9.3E-07 52.6 0.7 29 41-70 67-95 (240)
27 3v33_A Ribonuclease ZC3H12A; r 82.4 0.26 8.9E-06 45.8 0.0 27 135-164 191-217 (223)
28 3v33_A Ribonuclease ZC3H12A; r 62.3 1.6 5.5E-05 40.5 0.0 24 89-115 191-214 (223)
29 2kqb_A Aprataxin and PNK-like 36.8 14 0.00048 29.6 1.6 9 100-108 57-65 (89)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.3e-14 Score=111.86 Aligned_cols=70 Identities=27% Similarity=0.681 Sum_probs=58.0
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCCCCCc
Q 017879 41 RPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSV 120 (364)
Q Consensus 41 Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~ 120 (364)
..++.+|+||++ |.|++|++|+|+|+.+.. ++++|+||+++|.|. |++|+|.|.....
T Consensus 7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~--- 64 (77)
T 2d9n_A 7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPES--- 64 (77)
T ss_dssp CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS---
T ss_pred CCcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCccc---
Confidence 456789999997 999999999999987632 356899999989999 8999999986532
Q ss_pred CcccccCCCCCCCCCcccccccccccc
Q 017879 121 SNVSLNYYGYPLRPGEKECSYYMKTRQ 147 (364)
Q Consensus 121 ~~~~ln~~g~P~rpg~~~C~fY~rtG~ 147 (364)
++++|++|++ |.
T Consensus 65 --------------~~~~C~~f~~-g~ 76 (77)
T 2d9n_A 65 --------------KIKDCPWSGP-SS 76 (77)
T ss_dssp --------------SCSSSSCCTT-TC
T ss_pred --------------cCCCCccccc-CC
Confidence 3468999997 63
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.47 E-value=1.6e-14 Score=112.41 Aligned_cols=68 Identities=25% Similarity=0.614 Sum_probs=29.9
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCC
Q 017879 40 ERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ 115 (364)
Q Consensus 40 ~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~ 115 (364)
.+.++.+|++|+++|.|++|++|+|+|+.++.+... ...+.++.+|++|..+|.|++|++|+|+|...
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 467889999998889999999999999988654211 11246788999888789999999999999764
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.44 E-value=1.6e-14 Score=118.86 Aligned_cols=89 Identities=26% Similarity=0.413 Sum_probs=69.1
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCC
Q 017879 36 ESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ 115 (364)
Q Consensus 36 ~~~P~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~ 115 (364)
..+..+.++.+|+||+ +|.|++|++|+|+|+ +.+|++|+++|.|++|++|+|+|+..
T Consensus 5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 5 SSGELPKKRELCKFYI-TGFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred ccCCCCCCCccCcccc-cCcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 4566677899999998 699999999999997 23799998669999999999999854
Q ss_pred CCCCc--CcccccCCCCCCCCCcccccccccccc
Q 017879 116 GAGSV--SNVSLNYYGYPLRPGEKECSYYMKTRQ 147 (364)
Q Consensus 116 ~~~~~--~~~~ln~~g~P~rpg~~~C~fY~rtG~ 147 (364)
..... -...++..+.+.+.++++|.+++++|.
T Consensus 62 ~~~~~~~l~~~l~~~~~~~~~~e~e~~~~~k~~~ 95 (98)
T 2cqe_A 62 TEETRELLDKMLADDAEAGAEDEKEVEELKKSGP 95 (98)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred cccchhHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence 32110 011234446678889999999999874
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.42 E-value=5.6e-14 Score=109.35 Aligned_cols=67 Identities=24% Similarity=0.626 Sum_probs=28.5
Q ss_pred CcCCcccccccccCCCCCCCCCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCC
Q 017879 87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (364)
Q Consensus 87 r~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~ 161 (364)
+.++.+|++|+++|.|++|++|+|+|+..+..... ...+.++.+|++|..+|.|++|++|+|.|...
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 56889999998779999999999999887543211 01123467899888789999999999999864
No 5
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3e-12 Score=100.67 Aligned_cols=58 Identities=31% Similarity=0.712 Sum_probs=49.8
Q ss_pred cCCcccccccccCCCCCCCCCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCCCCC
Q 017879 88 VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGV 164 (364)
Q Consensus 88 ~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~~~ 164 (364)
.++.+|+||++ |.|++|++|+|+|+.... ..++|+||+++|.|. |++|+|.|..+...
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPESK 65 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred CcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence 47789999999 999999999999986532 235799999889999 99999999987543
No 6
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.26 E-value=3.1e-12 Score=105.22 Aligned_cols=52 Identities=29% Similarity=0.742 Sum_probs=45.9
Q ss_pred CcCCcccccccccCCCCCCCCCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCC
Q 017879 87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (364)
Q Consensus 87 r~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~ 161 (364)
+.++.+|+||++ |.|++|++|+|+|+ ..+|++|+++|.|++|++|+|.|...
T Consensus 10 ~~k~~lC~~f~~-G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 10 PKKRELCKFYIT-GFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SCCCSBCTTTTT-TCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCCccCccccc-CcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 357889999986 99999999999997 24699997669999999999999854
No 7
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.24 E-value=2e-12 Score=100.70 Aligned_cols=58 Identities=28% Similarity=0.695 Sum_probs=49.6
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCC
Q 017879 40 ERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG 116 (364)
Q Consensus 40 ~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~ 116 (364)
...++.+|+||++ |.|++|++|+|+|+.+.. ++++|+||++.|.|.+ ++|+|.|....
T Consensus 12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 12 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SCCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCCcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 4467789999997 999999999999986531 4568999998899999 99999998654
No 8
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.24 E-value=2.5e-12 Score=100.18 Aligned_cols=58 Identities=31% Similarity=0.700 Sum_probs=49.3
Q ss_pred CcCCcccccccccCCCCCCCCCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCCCC
Q 017879 87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAG 163 (364)
Q Consensus 87 r~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~~ 163 (364)
..++.+|+||++ |.|++|++|+|+|+.+.. ..++|+||+++|.|.+ ++|+|.|..+.+
T Consensus 13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CCcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 357789999999 999999999999986532 2457999998899999 999999998854
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.10 E-value=2.9e-11 Score=93.39 Aligned_cols=60 Identities=37% Similarity=0.783 Sum_probs=48.3
Q ss_pred CCccccccccCCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCC
Q 017879 43 DEADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ 115 (364)
Q Consensus 43 ~~~~C~yflrtG~C~~G~-~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~ 115 (364)
+.++|++|++ |.|.+|+ .|+|+|+.+...+ .+...++++|++|++ |.|.+| +|+|.|...
T Consensus 5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMI----------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC----------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred cchhCHHHhc-CCCCCCCCCCCCccCcccccc----------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 3478999986 9999999 5999999875432 122346789999999 999999 899999754
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.7e-11 Score=100.92 Aligned_cols=69 Identities=32% Similarity=0.675 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCC
Q 017879 34 GAESYPERPDEADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHH 112 (364)
Q Consensus 34 ~~~~~P~Rp~~~~C~yflrtG~C~~G~-~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH 112 (364)
.........+.++|++|++ |.|++|+ .|+|.|+.+...+ .+...+.++|++|++ |.|.++ +|+|.|
T Consensus 10 ~~~K~~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H 76 (98)
T 2e5s_A 10 ATQKLLRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMI----------DTSDNTVTVCMDYIK-GRCMRE-KCKYFH 76 (98)
T ss_dssp CCCCCCCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC----------CTTTCEEEBCHHHHH-TCCCCT-TCCSBC
T ss_pred ccccccChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc----------cccCCccccchhhcc-CCCCCC-CcCccC
Confidence 3445555556789999998 9999999 7999999876432 122346789999999 999999 899999
Q ss_pred CCC
Q 017879 113 PRQ 115 (364)
Q Consensus 113 ~~~ 115 (364)
+..
T Consensus 77 ~~~ 79 (98)
T 2e5s_A 77 PPA 79 (98)
T ss_dssp CCH
T ss_pred ChH
Confidence 865
No 11
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.96 E-value=1.9e-10 Score=88.78 Aligned_cols=60 Identities=30% Similarity=0.697 Sum_probs=46.7
Q ss_pred CCcccccccccCCCCCCC-CCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCC
Q 017879 89 GQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (364)
Q Consensus 89 k~~~Cr~flktG~Ck~G~-~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~ 161 (364)
+..+|++|++ |.|+.|+ .|+|+|+.+..... +......+|.+|++ |.|.+| +|+|.|+.+
T Consensus 5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred cchhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 4568999998 9999999 59999987643110 01124568999999 999999 999999864
No 12
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.2e-10 Score=94.23 Aligned_cols=61 Identities=28% Similarity=0.645 Sum_probs=48.6
Q ss_pred cCCcccccccccCCCCCCC-CCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCC
Q 017879 88 VGQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (364)
Q Consensus 88 ~k~~~Cr~flktG~Ck~G~-~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~ 161 (364)
.+..+|++|++ |.|++|+ .|+|+|+.+..... +......+|.+|++ |.|.++ +|+|.|+.+
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA 79 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence 35679999999 9999998 79999987643110 11224568999999 999999 999999875
No 13
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.88 E-value=9.6e-10 Score=87.93 Aligned_cols=58 Identities=29% Similarity=0.643 Sum_probs=47.4
Q ss_pred CCccccccccCCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCC
Q 017879 43 DEADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ 115 (364)
Q Consensus 43 ~~~~C~yflrtG~C~~G~-~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~ 115 (364)
+.++|++|++ |.|.+|+ .|+|+|+.....+. ..+.++|.+|++ |.|..+ +|+|.|+..
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~------------~~~~~vC~dflk-G~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE------------TTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeehhHhhh-ccccCC-CcceeCChH
Confidence 3468999998 9999997 99999998753220 125679999999 999998 899999865
No 14
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.76 E-value=2.9e-09 Score=86.28 Aligned_cols=57 Identities=30% Similarity=0.668 Sum_probs=47.3
Q ss_pred CccccccccCCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCC
Q 017879 44 EADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ 115 (364)
Q Consensus 44 ~~~C~yflrtG~C~~G~-~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~ 115 (364)
.++|++|++ |.|.+|+ .|+|+|+.+...+. .-+.++|.+|++ |.|..+ +|+|.|+..
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~------------~~~~~vC~dflk-G~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPT 74 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB------------TTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeeehhhhh-CcCCCC-CcceecCHH
Confidence 468999998 9999998 99999998864321 125679999999 999987 899999864
No 15
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.72 E-value=4.2e-09 Score=84.20 Aligned_cols=59 Identities=32% Similarity=0.717 Sum_probs=46.9
Q ss_pred cCCcccccccccCCCCCCC-CCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCC
Q 017879 88 VGQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (364)
Q Consensus 88 ~k~~~Cr~flktG~Ck~G~-~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~ 161 (364)
.+..+|++|++ |.|+.|+ .|+|+|+..... ++ .....+|.+|++ |.|..+ .|+|.|+..
T Consensus 7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~----~~--------~~~~~vC~dflk-G~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSCQ----VE--------NGRVIACFDSLK-GRCSRE-NCKYLHPPP 66 (83)
T ss_dssp GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCC----EE--------TTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred ccchhcHHHhc-CCCCCCCCCCCCcCCCcccc----cc--------CCceeehhHhhh-ccccCC-CcceeCChH
Confidence 35679999999 9999996 899999876421 00 112468999999 999998 999999865
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.63 E-value=2e-08 Score=81.28 Aligned_cols=58 Identities=29% Similarity=0.664 Sum_probs=46.6
Q ss_pred CCcccccccccCCCCCCC-CCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCC
Q 017879 89 GQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (364)
Q Consensus 89 k~~~Cr~flktG~Ck~G~-~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~ 161 (364)
+..+|++|++ |.|+.|+ .|+|+|+...... + .-...+|.+|++ |.|.++ .|+|.|+..
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v----~--------~~~~~vC~dflk-G~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQV----E--------NGRVIACFDSLK-GRCSRE-NCKYLHPPT 74 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC----B--------TTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCccccc----c--------CCceeeehhhhh-CcCCCC-CcceecCHH
Confidence 4569999999 9999998 9999998764211 0 113468999998 999998 999999865
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.62 E-value=1.3e-08 Score=94.83 Aligned_cols=85 Identities=20% Similarity=0.454 Sum_probs=64.8
Q ss_pred CccccccccCCCC----CCCCCCCCCCCCCCCCcccccc------------------CCCCCCCCCcCCccccccccc--
Q 017879 44 EADCIHYVRTGFC----AYGSRCRFNHPRDRGSVMGAAR------------------AGGGEFPERVGQPVCQYYMRT-- 99 (364)
Q Consensus 44 ~~~C~yflrtG~C----~~G~~CkF~Hp~~~~~~~~~~r------------------~~~~~~Per~k~~~Cr~flkt-- 99 (364)
-.+|++|+. |.| ..+..|||+|+.....+....+ ++..-.|| +|.+| +.
T Consensus 89 LHLCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPe-----iC~~Y-kG~g 161 (229)
T 3u9g_A 89 LHLCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPE-----ICKSY-KGEG 161 (229)
T ss_dssp BCCCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCC-----BCTTC-CCSS
T ss_pred eeechhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCch-----HHHHh-CCCC
Confidence 467999995 999 3468899999987654321111 11123465 99999 72
Q ss_pred --CCCCCCCCCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCCC
Q 017879 100 --GTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 162 (364)
Q Consensus 100 --G~Ck~G~~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~ 162 (364)
|.|+++++|...| +|.+|++ |.|+| .+|+..|....
T Consensus 162 ~~g~C~~~~~C~kLH-------------------------IC~~Fl~-G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 162 RKQTCGQPQPCERLH-------------------------ICEHFTR-GNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp SCCSCSSSSCCCSBC-------------------------SCHHHHT-TCCCC-SSCSSCCCTTS
T ss_pred CCCcCCCCCCCccee-------------------------ccchhhc-CCcCC-CCccCccCccC
Confidence 5899999999999 5999998 99999 89999998653
No 18
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=97.37 E-value=4.2e-07 Score=72.25 Aligned_cols=68 Identities=26% Similarity=0.710 Sum_probs=54.6
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCCCCCcCcc
Q 017879 44 EADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNV 123 (364)
Q Consensus 44 ~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~~~ 123 (364)
++.|+|+. .|+. ..|.|.|+.. ...|+|+.. |+. ..|.|.|+..
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~~--------------------~~~Cr~g~~---C~~-~~C~f~HP~~-------- 52 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHARS--------------------HIMCREGAN---CTR-IDCLFGHPIN-------- 52 (80)
Confidence 46799998 5999 9999999643 137999987 997 6799999722
Q ss_pred cccCCCCCCCCCccccccccccccCCCCCCCcccCCCCCCC
Q 017879 124 SLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGV 164 (364)
Q Consensus 124 ~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~~~ 164 (364)
+.|+|+.. |.+ .+|.|.|+....+
T Consensus 53 -------------~~Crf~~~---C~n-~~C~F~Hp~g~~~ 76 (80)
T 2lhn_A 53 -------------EDCRFGVN---CKN-IYCLFRHPPGRVL 76 (80)
Confidence 46999876 998 8999999876554
No 19
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.44 E-value=6.2e-05 Score=70.15 Aligned_cols=43 Identities=28% Similarity=0.708 Sum_probs=39.3
Q ss_pred cccccccc----CCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCC
Q 017879 45 ADCIHYVR----TGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ 115 (364)
Q Consensus 45 ~~C~yflr----tG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~ 115 (364)
++|.+| | .|.|++++.|...| +|++|++ |.|+| .+|+-+|+..
T Consensus 152 eiC~~Y-kG~g~~g~C~~~~~C~kLH-------------------------IC~~Fl~-G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 152 EICKSY-KGEGRKQTCGQPQPCERLH-------------------------ICEHFTR-GNCSY-LNCLRSHNLM 198 (229)
T ss_dssp CBCTTC-CCSSSCCSCSSSSCCCSBC-------------------------SCHHHHT-TCCCC-SSCSSCCCTT
T ss_pred hHHHHh-CCCCCCCcCCCCCCCccee-------------------------ccchhhc-CCcCC-CCccCccCcc
Confidence 589999 7 36999999999999 7999999 99999 7999999875
No 20
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.0008 Score=51.98 Aligned_cols=29 Identities=28% Similarity=0.583 Sum_probs=25.0
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCC
Q 017879 43 DEADCIHYVRTGFCAYGSRCRFNHPRDRGS 72 (364)
Q Consensus 43 ~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~ 72 (364)
+..+|..|. +|.|++|++|.|+|..++.+
T Consensus 19 k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr 47 (69)
T 2d9m_A 19 YFSICDRYM-NGTCPEGNSCKFAHGNAELH 47 (69)
T ss_dssp CCSBCHHHH-HSCCSSCSSCSSBSSHHHHH
T ss_pred CcccCcccC-cCCCCCCCccCCcCCHHHHh
Confidence 448999995 69999999999999887654
No 21
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.44 E-value=0.00074 Score=52.14 Aligned_cols=28 Identities=39% Similarity=0.800 Sum_probs=23.8
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCCCC
Q 017879 89 GQPVCQYYMRTGTCKYGASCKYHHPRQGA 117 (364)
Q Consensus 89 k~~~Cr~flktG~Ck~G~~CkFsH~~~~~ 117 (364)
+..+|+.|++ |.|+||++|.|+|...++
T Consensus 19 k~~LC~~~~~-G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 19 YFSICDRYMN-GTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CCSBCHHHHH-SCCSSCSSCSSBSSHHHH
T ss_pred CcccCcccCc-CCCCCCCccCCcCCHHHH
Confidence 5579999965 999999999999987643
No 22
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.59 E-value=0.002 Score=51.02 Aligned_cols=43 Identities=30% Similarity=0.713 Sum_probs=35.0
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCC
Q 017879 89 GQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP 159 (364)
Q Consensus 89 k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp 159 (364)
..+.|+|+.. |+. ..|.|.|+.. ...|+|+.. |+. .+|.|.||
T Consensus 8 ~~e~CKf~~~---Ctn-~~C~f~Hp~~--------------------~~~Cr~g~~---C~~-~~C~f~HP 50 (80)
T 2lhn_A 8 SLEQCKFGTH---CTN-KRCKYRHARS--------------------HIMCREGAN---CTR-IDCLFGHP 50 (80)
Confidence 3458999998 998 8999999753 135999876 997 78999998
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.52 E-value=0.0037 Score=45.24 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=26.1
Q ss_pred cCCcccccccccCCCCCCCCCCCCCCCCC
Q 017879 88 VGQPVCQYYMRTGTCKYGASCKYHHPRQG 116 (364)
Q Consensus 88 ~k~~~Cr~flktG~Ck~G~~CkFsH~~~~ 116 (364)
.++.+|.-|...|+|++|.+|.++|+.+.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 46789999999999999999999998764
No 24
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.10 E-value=0.016 Score=41.88 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=26.6
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCC
Q 017879 42 PDEADCIHYVRTGFCAYGSRCRFNHPRDR 70 (364)
Q Consensus 42 p~~~~C~yflrtG~C~~G~~CkF~Hp~~~ 70 (364)
.++.+|.-|...|.|++|.+|.+.|+.+-
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 57899999999999999999999999873
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.23 E-value=0.022 Score=53.28 Aligned_cols=27 Identities=26% Similarity=0.655 Sum_probs=24.1
Q ss_pred CccccccccccccCCCCCCCcccCCCCC
Q 017879 135 GEKECSYYMKTRQCKFGATCKFHHPQPA 162 (364)
Q Consensus 135 g~~~C~fY~rtG~Ck~G~~CrF~Hp~~~ 162 (364)
...+|.||.+ |.|++|+.|.|.|-.|.
T Consensus 69 ~~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 69 QLFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CCSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CCeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 3458999999 99999999999998776
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.62 E-value=0.027 Score=52.64 Aligned_cols=29 Identities=21% Similarity=0.654 Sum_probs=24.4
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCC
Q 017879 41 RPDEADCIHYVRTGFCAYGSRCRFNHPRDR 70 (364)
Q Consensus 41 Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~ 70 (364)
+....+|.||.| |.|++|+.|.|.|....
T Consensus 67 ~~~~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 67 DGQLFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp TTCCSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CCCCeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 345579999998 99999999999996543
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=82.38 E-value=0.26 Score=45.79 Aligned_cols=27 Identities=33% Similarity=0.952 Sum_probs=0.0
Q ss_pred CccccccccccccCCCCCCCcccCCCCCCC
Q 017879 135 GEKECSYYMKTRQCKFGATCKFHHPQPAGV 164 (364)
Q Consensus 135 g~~~C~fY~rtG~Ck~G~~CrF~Hp~~~~~ 164 (364)
..+.|+|-.+ |.||.+|+|.||+....
T Consensus 191 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 217 (223)
T 3v33_A 191 RKQPCPYGRK---CTYGIKCRFFHPERPSC 217 (223)
T ss_dssp ------------------------------
T ss_pred CCCCCCCCcc---cccCCcceecCCccCCc
Confidence 4567999776 99999999999998653
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=62.28 E-value=1.6 Score=40.47 Aligned_cols=24 Identities=33% Similarity=1.035 Sum_probs=0.0
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCC
Q 017879 89 GQPVCQYYMRTGTCKYGASCKYHHPRQ 115 (364)
Q Consensus 89 k~~~Cr~flktG~Ck~G~~CkFsH~~~ 115 (364)
+.+.|.|=.+ |.||.+|||.|+..
T Consensus 191 ~~~~~~~~~~---~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGRK---CTYGIKCRFFHPER 214 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCCCcc---cccCCcceecCCcc
Confidence 5678998765 99999999999864
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=36.80 E-value=14 Score=29.61 Aligned_cols=9 Identities=56% Similarity=1.390 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q 017879 100 GTCKYGASC 108 (364)
Q Consensus 100 G~Ck~G~~C 108 (364)
-.|+||.+|
T Consensus 57 p~C~YG~~C 65 (89)
T 2kqb_A 57 PECPYGPSC 65 (89)
T ss_dssp ---------
T ss_pred CCCCCchhh
Confidence 347788878
Done!